#transId geneId source chrom start end strand proteinId geneName transcriptName geneType transcriptType MGP_C3HHeJ_T0011778.1 MGP_C3HHeJ_G0009882.1 mouse_genomes_project 1 5528306 5528706 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019541.1 MGP_C3HHeJ_G0015782.1 mouse_genomes_project 1 52020592 52053472 - MGP_C3HHeJ_P0019541 Inpp1 protein_coding protein_coding MGP_C3HHeJ_T0019542.1 MGP_C3HHeJ_G0015782.1 mouse_genomes_project 1 52024592 52034413 - MGP_C3HHeJ_P0019542 Inpp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019543.1 MGP_C3HHeJ_G0015782.1 mouse_genomes_project 1 52024980 52029973 - Inpp1 protein_coding retained_intron MGP_C3HHeJ_T0019544.1 MGP_C3HHeJ_G0015782.1 mouse_genomes_project 1 52029589 52053352 - MGP_C3HHeJ_P0019544 Inpp1 protein_coding protein_coding MGP_C3HHeJ_T0019545.1 MGP_C3HHeJ_G0015782.1 mouse_genomes_project 1 52031903 52053235 - Inpp1 protein_coding retained_intron MGP_C3HHeJ_T0019546.1 MGP_C3HHeJ_G0015782.1 mouse_genomes_project 1 52031990 52035296 - MGP_C3HHeJ_P0019546 Inpp1 protein_coding protein_coding MGP_C3HHeJ_T0018617.1 MGP_C3HHeJ_G0015602.1 mouse_genomes_project 1 7089846 7097546 - MGP_C3HHeJ_P0018617 Tcf24 protein_coding protein_coding MGP_C3HHeJ_T0018618.1 MGP_C3HHeJ_G0015602.1 mouse_genomes_project 1 7089854 7092492 - MGP_C3HHeJ_P0018618 Tcf24 protein_coding protein_coding MGP_C3HHeJ_T0011786.1 MGP_C3HHeJ_G0009890.1 mouse_genomes_project 1 6565995 6567165 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023728.1 MGP_C3HHeJ_G0016652.1 mouse_genomes_project 1 187225009 187233307 + MGP_C3HHeJ_P0023728 Srp9 protein_coding protein_coding MGP_C3HHeJ_T0023729.1 MGP_C3HHeJ_G0016652.1 mouse_genomes_project 1 187225022 187233795 + MGP_C3HHeJ_P0023729 Srp9 protein_coding protein_coding MGP_C3HHeJ_T0023730.1 MGP_C3HHeJ_G0016652.1 mouse_genomes_project 1 187225053 187228764 + Srp9 protein_coding retained_intron MGP_C3HHeJ_T0023731.1 MGP_C3HHeJ_G0016652.1 mouse_genomes_project 1 187231584 187233193 + Srp9 protein_coding retained_intron MGP_C3HHeJ_T0019737.1 MGP_C3HHeJ_G0015821.1 mouse_genomes_project 1 58044910 58060353 - MGP_C3HHeJ_P0019737 Ppil3 protein_coding protein_coding MGP_C3HHeJ_T0019738.1 MGP_C3HHeJ_G0015821.1 mouse_genomes_project 1 58044910 58060348 - MGP_C3HHeJ_P0019738 Ppil3 protein_coding protein_coding MGP_C3HHeJ_T0019739.1 MGP_C3HHeJ_G0015821.1 mouse_genomes_project 1 58044913 58060405 - MGP_C3HHeJ_P0019739 Ppil3 protein_coding protein_coding MGP_C3HHeJ_T0019740.1 MGP_C3HHeJ_G0015821.1 mouse_genomes_project 1 58044936 58046102 - Ppil3 protein_coding processed_transcript MGP_C3HHeJ_T0019741.1 MGP_C3HHeJ_G0015821.1 mouse_genomes_project 1 58047703 58060288 - MGP_C3HHeJ_P0019741 Ppil3 protein_coding protein_coding MGP_C3HHeJ_T0019742.1 MGP_C3HHeJ_G0015821.1 mouse_genomes_project 1 58048331 58060358 - MGP_C3HHeJ_P0019742 Ppil3 protein_coding protein_coding MGP_C3HHeJ_T0019743.1 MGP_C3HHeJ_G0015821.1 mouse_genomes_project 1 58048335 58060401 - MGP_C3HHeJ_P0019743 Ppil3 protein_coding protein_coding MGP_C3HHeJ_T0019744.1 MGP_C3HHeJ_G0015821.1 mouse_genomes_project 1 58052668 58060095 - Ppil3 protein_coding retained_intron MGP_C3HHeJ_T0019745.1 MGP_C3HHeJ_G0015821.1 mouse_genomes_project 1 58053322 58055459 - Ppil3 protein_coding retained_intron MGP_C3HHeJ_T0000498.1 MGP_C3HHeJ_G0000445.1 mouse_genomes_project 1 80690658 80691825 - TEC TEC MGP_C3HHeJ_T0019006.1 MGP_C3HHeJ_G0015681.1 mouse_genomes_project 1 32647964 32649259 + Ptpn18 protein_coding retained_intron MGP_C3HHeJ_T0019007.1 MGP_C3HHeJ_G0015681.1 mouse_genomes_project 1 32647967 32662709 + MGP_C3HHeJ_P0019007 Ptpn18 protein_coding protein_coding MGP_C3HHeJ_T0019008.1 MGP_C3HHeJ_G0015681.1 mouse_genomes_project 1 32647979 32660890 + MGP_C3HHeJ_P0019008 Ptpn18 protein_coding protein_coding MGP_C3HHeJ_T0019009.1 MGP_C3HHeJ_G0015681.1 mouse_genomes_project 1 32647994 32660889 + Ptpn18 protein_coding retained_intron MGP_C3HHeJ_T0019010.1 MGP_C3HHeJ_G0015681.1 mouse_genomes_project 1 32648026 32662571 + MGP_C3HHeJ_P0019010 Ptpn18 protein_coding unknown_likely_coding MGP_C3HHeJ_T0019011.1 MGP_C3HHeJ_G0015681.1 mouse_genomes_project 1 32651473 32655016 + Ptpn18 protein_coding retained_intron MGP_C3HHeJ_T0019012.1 MGP_C3HHeJ_G0015681.1 mouse_genomes_project 1 32661644 32664658 + MGP_C3HHeJ_P0019012 Ptpn18 protein_coding protein_coding MGP_C3HHeJ_T0019013.1 MGP_C3HHeJ_G0015681.1 mouse_genomes_project 1 32663423 32664658 + Ptpn18 protein_coding processed_transcript MGP_C3HHeJ_T0098656.1 MGP_C3HHeJ_G0036850.1 mouse_genomes_project 1 139894587 139894691 - Gm25609 snRNA snRNA MGP_C3HHeJ_T0018490.1 MGP_C3HHeJ_G0015579.1 mouse_genomes_project 1 1058859 1210055 - MGP_C3HHeJ_P0018490 unknown_likely_coding unknown_likely_coding MGP_C3HHeJ_T0021807.1 MGP_C3HHeJ_G0016240.1 mouse_genomes_project 1 134795818 134831096 - MGP_C3HHeJ_P0021807 Tmcc2 protein_coding protein_coding MGP_C3HHeJ_T0021808.1 MGP_C3HHeJ_G0016240.1 mouse_genomes_project 1 134795819 134807390 - Tmcc2 protein_coding retained_intron MGP_C3HHeJ_T0021809.1 MGP_C3HHeJ_G0016240.1 mouse_genomes_project 1 134795819 134807391 - MGP_C3HHeJ_P0021809 Tmcc2 protein_coding protein_coding MGP_C3HHeJ_T0021810.1 MGP_C3HHeJ_G0016240.1 mouse_genomes_project 1 134800102 134806576 - Tmcc2 protein_coding processed_transcript MGP_C3HHeJ_T0021811.1 MGP_C3HHeJ_G0016240.1 mouse_genomes_project 1 134800529 134804452 - Tmcc2 protein_coding processed_transcript MGP_C3HHeJ_T0005966.1 MGP_C3HHeJ_G0004986.1 mouse_genomes_project 1 190929610 190943807 + Gm38093 lincRNA lincRNA MGP_C3HHeJ_T0002885.1 MGP_C3HHeJ_G0002713.1 mouse_genomes_project 1 175438160 175445025 - antisense antisense MGP_C3HHeJ_T0002886.1 MGP_C3HHeJ_G0002713.1 mouse_genomes_project 1 175443722 175445025 - antisense antisense MGP_C3HHeJ_T0023154.1 MGP_C3HHeJ_G0016512.1 mouse_genomes_project 1 175143179 175147819 - MGP_C3HHeJ_P0023154 Fcer1g protein_coding protein_coding MGP_C3HHeJ_T0023155.1 MGP_C3HHeJ_G0016512.1 mouse_genomes_project 1 175143187 175147761 - MGP_C3HHeJ_P0023155 Fcer1g protein_coding protein_coding MGP_C3HHeJ_T0023156.1 MGP_C3HHeJ_G0016512.1 mouse_genomes_project 1 175144652 175147793 - Fcer1g protein_coding retained_intron MGP_C3HHeJ_T0011164.1 MGP_C3HHeJ_G0009297.1 mouse_genomes_project 1 177008508 177008835 - Gm22383 misc_RNA misc_RNA MGP_C3HHeJ_T0005964.1 MGP_C3HHeJ_G0004984.1 mouse_genomes_project 1 190533496 190539057 - 4930532G15Rik lincRNA lincRNA MGP_C3HHeJ_T0022139.1 MGP_C3HHeJ_G0016309.1 mouse_genomes_project 1 138876504 138956535 - MGP_C3HHeJ_P0022139 Camsap2 protein_coding protein_coding MGP_C3HHeJ_T0022140.1 MGP_C3HHeJ_G0016309.1 mouse_genomes_project 1 138876633 138890133 - MGP_C3HHeJ_P0022140 Camsap2 protein_coding protein_coding MGP_C3HHeJ_T0022141.1 MGP_C3HHeJ_G0016309.1 mouse_genomes_project 1 138877541 138956129 - MGP_C3HHeJ_P0022141 Camsap2 protein_coding protein_coding MGP_C3HHeJ_T0022142.1 MGP_C3HHeJ_G0016309.1 mouse_genomes_project 1 138878987 138956129 - MGP_C3HHeJ_P0022142 Camsap2 protein_coding protein_coding MGP_C3HHeJ_T0022143.1 MGP_C3HHeJ_G0016309.1 mouse_genomes_project 1 138902839 138905732 - Camsap2 protein_coding processed_transcript MGP_C3HHeJ_T0022144.1 MGP_C3HHeJ_G0016309.1 mouse_genomes_project 1 138940760 138956521 - Camsap2 protein_coding processed_transcript MGP_C3HHeJ_T0011693.1 MGP_C3HHeJ_G0009826.1 mouse_genomes_project 1 109289466 109309755 + MGP_C3HHeJ_P0011693 polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0011694.1 MGP_C3HHeJ_G0009826.1 mouse_genomes_project 1 109289490 109311804 + polymorphic_pseudogene processed_transcript MGP_C3HHeJ_T0011695.1 MGP_C3HHeJ_G0009826.1 mouse_genomes_project 1 109292834 109309605 + MGP_C3HHeJ_P0011695 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0019427.1 MGP_C3HHeJ_G0015763.1 mouse_genomes_project 1 44003500 44018340 + Col3a1 protein_coding retained_intron MGP_C3HHeJ_T0019428.1 MGP_C3HHeJ_G0015763.1 mouse_genomes_project 1 44003500 44047978 + MGP_C3HHeJ_P0019428 Col3a1 protein_coding protein_coding MGP_C3HHeJ_T0019429.1 MGP_C3HHeJ_G0015763.1 mouse_genomes_project 1 44003609 44008953 + Col3a1 protein_coding processed_transcript MGP_C3HHeJ_T0019430.1 MGP_C3HHeJ_G0015763.1 mouse_genomes_project 1 44020910 44022216 + Col3a1 protein_coding retained_intron MGP_C3HHeJ_T0019431.1 MGP_C3HHeJ_G0015763.1 mouse_genomes_project 1 44028907 44032005 + Col3a1 protein_coding retained_intron MGP_C3HHeJ_T0019432.1 MGP_C3HHeJ_G0015763.1 mouse_genomes_project 1 44030473 44035377 + MGP_C3HHeJ_P0019432 Col3a1 protein_coding protein_coding MGP_C3HHeJ_T0019433.1 MGP_C3HHeJ_G0015763.1 mouse_genomes_project 1 44034658 44046039 + MGP_C3HHeJ_P0019433 Col3a1 protein_coding protein_coding MGP_C3HHeJ_T0101561.1 MGP_C3HHeJ_G0039527.1 mouse_genomes_project 1 89045414 89046258 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0023398.1 MGP_C3HHeJ_G0016571.1 mouse_genomes_project 1 177761004 177769561 + protein_coding processed_transcript MGP_C3HHeJ_T0023399.1 MGP_C3HHeJ_G0016571.1 mouse_genomes_project 1 177762408 177801887 + MGP_C3HHeJ_P0023399 protein_coding protein_coding MGP_C3HHeJ_T0023400.1 MGP_C3HHeJ_G0016571.1 mouse_genomes_project 1 177795125 177808688 + MGP_C3HHeJ_P0023400 protein_coding unknown_likely_coding MGP_C3HHeJ_T0023401.1 MGP_C3HHeJ_G0016571.1 mouse_genomes_project 1 177797150 177797775 + MGP_C3HHeJ_P0023401 protein_coding protein_coding MGP_C3HHeJ_T0023402.1 MGP_C3HHeJ_G0016571.1 mouse_genomes_project 1 177797533 177804220 + protein_coding processed_transcript MGP_C3HHeJ_T0023403.1 MGP_C3HHeJ_G0016571.1 mouse_genomes_project 1 177797667 177798345 + protein_coding processed_transcript MGP_C3HHeJ_T0019946.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63002837 63004203 - Ndufs1 protein_coding retained_intron MGP_C3HHeJ_T0019947.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63002837 63036196 - MGP_C3HHeJ_P0019947 Ndufs1 protein_coding protein_coding MGP_C3HHeJ_T0019948.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63002845 63006965 - Ndufs1 protein_coding retained_intron MGP_C3HHeJ_T0019949.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63002930 63006633 - MGP_C3HHeJ_P0019949 Ndufs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019950.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63002976 63036106 - MGP_C3HHeJ_P0019950 Ndufs1 protein_coding protein_coding MGP_C3HHeJ_T0019951.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63009306 63036037 - MGP_C3HHeJ_P0019951 Ndufs1 protein_coding protein_coding MGP_C3HHeJ_T0019952.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63009476 63012064 - Ndufs1 protein_coding retained_intron MGP_C3HHeJ_T0019953.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63015904 63036043 - Ndufs1 protein_coding retained_intron MGP_C3HHeJ_T0019954.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63018491 63036041 - Ndufs1 protein_coding retained_intron MGP_C3HHeJ_T0019955.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63023415 63036064 - MGP_C3HHeJ_P0019955 Ndufs1 protein_coding protein_coding MGP_C3HHeJ_T0019956.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63024589 63036040 - MGP_C3HHeJ_P0019956 Ndufs1 protein_coding protein_coding MGP_C3HHeJ_T0019957.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63028666 63036167 - MGP_C3HHeJ_P0019957 Ndufs1 protein_coding protein_coding MGP_C3HHeJ_T0019958.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63030259 63036207 - MGP_C3HHeJ_P0019958 Ndufs1 protein_coding protein_coding MGP_C3HHeJ_T0021701.1 MGP_C3HHeJ_G0016217.1 mouse_genomes_project 1 133441561 133486577 - MGP_C3HHeJ_P0021701 Mapkapk2 protein_coding protein_coding MGP_C3HHeJ_T0021702.1 MGP_C3HHeJ_G0016217.1 mouse_genomes_project 1 133444750 133460531 - MGP_C3HHeJ_P0021702 Mapkapk2 protein_coding protein_coding MGP_C3HHeJ_T0009444.1 MGP_C3HHeJ_G0007577.1 mouse_genomes_project 1 135381937 135382058 - Gm44300 miRNA miRNA MGP_C3HHeJ_T0000578.1 MGP_C3HHeJ_G0000525.1 mouse_genomes_project 1 128545198 128546213 - TEC TEC MGP_C3HHeJ_T0012131.1 MGP_C3HHeJ_G0010235.1 mouse_genomes_project 1 126821840 126822246 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009471.1 MGP_C3HHeJ_G0007604.1 mouse_genomes_project 1 185566041 185566108 + Mir6904 miRNA miRNA MGP_C3HHeJ_T0018883.1 MGP_C3HHeJ_G0015659.1 mouse_genomes_project 1 21635414 21709188 - MGP_C3HHeJ_P0018883 Fam135a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018884.1 MGP_C3HHeJ_G0015659.1 mouse_genomes_project 1 21635414 21652539 - MGP_C3HHeJ_P0018884 Fam135a protein_coding protein_coding MGP_C3HHeJ_T0018885.1 MGP_C3HHeJ_G0015659.1 mouse_genomes_project 1 21635566 21726145 - MGP_C3HHeJ_P0018885 Fam135a protein_coding protein_coding MGP_C3HHeJ_T0018886.1 MGP_C3HHeJ_G0015659.1 mouse_genomes_project 1 21635912 21726133 - MGP_C3HHeJ_P0018886 Fam135a protein_coding protein_coding MGP_C3HHeJ_T0018887.1 MGP_C3HHeJ_G0015659.1 mouse_genomes_project 1 21635925 21654866 - MGP_C3HHeJ_P0018887 Fam135a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018888.1 MGP_C3HHeJ_G0015659.1 mouse_genomes_project 1 21636002 21726284 - MGP_C3HHeJ_P0018888 Fam135a protein_coding protein_coding MGP_C3HHeJ_T0018889.1 MGP_C3HHeJ_G0015659.1 mouse_genomes_project 1 21649339 21654230 - MGP_C3HHeJ_P0018889 Fam135a protein_coding protein_coding MGP_C3HHeJ_T0018890.1 MGP_C3HHeJ_G0015659.1 mouse_genomes_project 1 21654501 21726167 - MGP_C3HHeJ_P0018890 Fam135a protein_coding protein_coding MGP_C3HHeJ_T0018891.1 MGP_C3HHeJ_G0015659.1 mouse_genomes_project 1 21678417 21726292 - Fam135a protein_coding retained_intron MGP_C3HHeJ_T0012058.1 MGP_C3HHeJ_G0010162.1 mouse_genomes_project 1 100137135 100137849 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021141.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94071208 94081257 + MGP_C3HHeJ_P0021141 Rnpepl1 protein_coding protein_coding MGP_C3HHeJ_T0021142.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94071250 94080988 + Rnpepl1 protein_coding retained_intron MGP_C3HHeJ_T0021143.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94071278 94073834 + Rnpepl1 protein_coding retained_intron MGP_C3HHeJ_T0021144.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94071546 94077153 + MGP_C3HHeJ_P0021144 Rnpepl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021145.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94071634 94076349 + MGP_C3HHeJ_P0021145 Rnpepl1 protein_coding protein_coding MGP_C3HHeJ_T0021146.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94076259 94080988 + Rnpepl1 protein_coding retained_intron MGP_C3HHeJ_T0021147.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94077206 94080988 + MGP_C3HHeJ_P0021147 Rnpepl1 protein_coding protein_coding MGP_C3HHeJ_T0021148.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94077220 94079632 + Rnpepl1 protein_coding retained_intron MGP_C3HHeJ_T0021149.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94077427 94078489 + Rnpepl1 protein_coding retained_intron MGP_C3HHeJ_T0021150.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94077562 94079481 + MGP_C3HHeJ_P0021150 Rnpepl1 protein_coding protein_coding MGP_C3HHeJ_T0021151.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94077831 94079633 + Rnpepl1 protein_coding retained_intron MGP_C3HHeJ_T0021152.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94080029 94084799 + MGP_C3HHeJ_P0021152 Rnpepl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002718.1 MGP_C3HHeJ_G0002587.1 mouse_genomes_project 1 36295230 36315126 + Gm15457 antisense antisense MGP_C3HHeJ_T0018753.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13579963 13899067 - MGP_C3HHeJ_P0018753 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018754.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13580090 13898989 - MGP_C3HHeJ_P0018754 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018755.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13580093 13898989 - MGP_C3HHeJ_P0018755 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018756.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13580099 13899067 - MGP_C3HHeJ_P0018756 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018757.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13580105 13899799 - MGP_C3HHeJ_P0018757 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018758.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13714487 13898955 - MGP_C3HHeJ_P0018758 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018759.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13714566 13899008 - MGP_C3HHeJ_P0018759 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018760.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13714651 13899754 - MGP_C3HHeJ_P0018760 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018761.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13715276 13747037 - Stau2 protein_coding processed_transcript MGP_C3HHeJ_T0018762.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13715369 13899001 - MGP_C3HHeJ_P0018762 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018763.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13715377 13899014 - MGP_C3HHeJ_P0018763 Stau2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018764.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13716672 13899068 - MGP_C3HHeJ_P0018764 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018765.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13763037 13899031 - MGP_C3HHeJ_P0018765 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018766.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13818956 13899767 - MGP_C3HHeJ_P0018766 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018767.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13833725 13899021 - MGP_C3HHeJ_P0018767 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018768.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13834114 13899708 - MGP_C3HHeJ_P0018768 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018769.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13834223 13899707 - MGP_C3HHeJ_P0018769 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0005833.1 MGP_C3HHeJ_G0004883.1 mouse_genomes_project 1 136470370 136482592 + Gm1627 lincRNA lincRNA MGP_C3HHeJ_T0019934.1 MGP_C3HHeJ_G0015853.1 mouse_genomes_project 1 62539846 62578314 + Nrp2 protein_coding retained_intron MGP_C3HHeJ_T0019935.1 MGP_C3HHeJ_G0015853.1 mouse_genomes_project 1 62539846 62660116 + MGP_C3HHeJ_P0019935 Nrp2 protein_coding protein_coding MGP_C3HHeJ_T0019936.1 MGP_C3HHeJ_G0015853.1 mouse_genomes_project 1 62539846 62660116 + MGP_C3HHeJ_P0019936 Nrp2 protein_coding protein_coding MGP_C3HHeJ_T0019937.1 MGP_C3HHeJ_G0015853.1 mouse_genomes_project 1 62540263 62660116 + MGP_C3HHeJ_P0019937 Nrp2 protein_coding protein_coding MGP_C3HHeJ_T0019938.1 MGP_C3HHeJ_G0015853.1 mouse_genomes_project 1 62540263 62636470 + MGP_C3HHeJ_P0019938 Nrp2 protein_coding protein_coding MGP_C3HHeJ_T0019939.1 MGP_C3HHeJ_G0015853.1 mouse_genomes_project 1 62540263 62638793 + MGP_C3HHeJ_P0019939 Nrp2 protein_coding protein_coding MGP_C3HHeJ_T0019940.1 MGP_C3HHeJ_G0015853.1 mouse_genomes_project 1 62540263 62660116 + MGP_C3HHeJ_P0019940 Nrp2 protein_coding protein_coding MGP_C3HHeJ_T0012266.1 MGP_C3HHeJ_G0010370.1 mouse_genomes_project 1 196371554 196371981 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023414.1 MGP_C3HHeJ_G0016578.1 mouse_genomes_project 1 178301050 178312993 - protein_coding processed_transcript MGP_C3HHeJ_T0023415.1 MGP_C3HHeJ_G0016578.1 mouse_genomes_project 1 178304657 178312196 - MGP_C3HHeJ_P0023415 protein_coding protein_coding MGP_C3HHeJ_T0023416.1 MGP_C3HHeJ_G0016578.1 mouse_genomes_project 1 178304824 178312288 - protein_coding processed_transcript MGP_C3HHeJ_T0023418.1 MGP_C3HHeJ_G0016578.1 mouse_genomes_project 1 178307268 178312309 - protein_coding retained_intron MGP_C3HHeJ_T0009376.1 MGP_C3HHeJ_G0007509.1 mouse_genomes_project 1 5663902 5664012 - Gm23358 miRNA miRNA MGP_C3HHeJ_T0011926.1 MGP_C3HHeJ_G0010030.1 mouse_genomes_project 1 48710453 48710890 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005718.1 MGP_C3HHeJ_G0004787.1 mouse_genomes_project 1 74032010 74133142 - Gm29183 lincRNA lincRNA MGP_C3HHeJ_T0000380.1 MGP_C3HHeJ_G0000328.1 mouse_genomes_project 1 23046356 23049611 - TEC TEC MGP_C3HHeJ_T0020173.1 MGP_C3HHeJ_G0015898.1 mouse_genomes_project 1 72486263 72511662 - MGP_C3HHeJ_P0020173 Pecr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020174.1 MGP_C3HHeJ_G0015898.1 mouse_genomes_project 1 72486268 72511716 - MGP_C3HHeJ_P0020174 Pecr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020175.1 MGP_C3HHeJ_G0015898.1 mouse_genomes_project 1 72486268 72511717 - MGP_C3HHeJ_P0020175 Pecr protein_coding protein_coding MGP_C3HHeJ_T0020176.1 MGP_C3HHeJ_G0015898.1 mouse_genomes_project 1 72494065 72511662 - MGP_C3HHeJ_P0020176 Pecr protein_coding protein_coding MGP_C3HHeJ_T0012216.1 MGP_C3HHeJ_G0010320.1 mouse_genomes_project 1 169305389 169306221 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101572.1 MGP_C3HHeJ_G0039538.1 mouse_genomes_project 1 103977058 104063262 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0024017.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197481497 197521235 - MGP_C3HHeJ_P0024017 Rcor3 protein_coding protein_coding MGP_C3HHeJ_T0024018.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197481512 197521265 - MGP_C3HHeJ_P0024018 Rcor3 protein_coding protein_coding MGP_C3HHeJ_T0024019.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197481722 197521256 - MGP_C3HHeJ_P0024019 Rcor3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024020.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197483535 197499266 - MGP_C3HHeJ_P0024020 Rcor3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024021.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197483738 197521287 - MGP_C3HHeJ_P0024021 Rcor3 protein_coding protein_coding MGP_C3HHeJ_T0024022.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197483762 197521057 - MGP_C3HHeJ_P0024022 Rcor3 protein_coding protein_coding MGP_C3HHeJ_T0024023.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197483858 197506931 - MGP_C3HHeJ_P0024023 Rcor3 protein_coding protein_coding MGP_C3HHeJ_T0024024.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197484339 197521152 - MGP_C3HHeJ_P0024024 Rcor3 protein_coding protein_coding MGP_C3HHeJ_T0024025.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197489137 197491803 - Rcor3 protein_coding retained_intron MGP_C3HHeJ_T0024026.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197511170 197514582 - Rcor3 protein_coding retained_intron MGP_C3HHeJ_T0024027.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197517522 197521260 - Rcor3 protein_coding retained_intron MGP_C3HHeJ_T0024028.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197519721 197521235 - Rcor3 protein_coding processed_transcript MGP_C3HHeJ_T0024029.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197520012 197521249 - Rcor3 protein_coding processed_transcript MGP_C3HHeJ_T0005746.1 MGP_C3HHeJ_G0004810.1 mouse_genomes_project 1 89432193 89439083 + Gm28888 lincRNA lincRNA MGP_C3HHeJ_T0022494.1 MGP_C3HHeJ_G0016378.1 mouse_genomes_project 1 158546766 158548277 - BC034090 protein_coding retained_intron MGP_C3HHeJ_T0022495.1 MGP_C3HHeJ_G0016378.1 mouse_genomes_project 1 158547815 158579134 - MGP_C3HHeJ_P0022495 BC034090 protein_coding protein_coding MGP_C3HHeJ_T0022496.1 MGP_C3HHeJ_G0016378.1 mouse_genomes_project 1 158551816 158560132 - BC034090 protein_coding processed_transcript MGP_C3HHeJ_T0022497.1 MGP_C3HHeJ_G0016378.1 mouse_genomes_project 1 158552566 158559881 - BC034090 protein_coding processed_transcript MGP_C3HHeJ_T0022498.1 MGP_C3HHeJ_G0016378.1 mouse_genomes_project 1 158560396 158564601 - BC034090 protein_coding processed_transcript MGP_C3HHeJ_T0022499.1 MGP_C3HHeJ_G0016378.1 mouse_genomes_project 1 158560746 158567618 - MGP_C3HHeJ_P0022499 BC034090 protein_coding protein_coding MGP_C3HHeJ_T0022500.1 MGP_C3HHeJ_G0016378.1 mouse_genomes_project 1 158560830 158575811 - BC034090 protein_coding retained_intron MGP_C3HHeJ_T0022501.1 MGP_C3HHeJ_G0016378.1 mouse_genomes_project 1 158563820 158566611 - BC034090 protein_coding retained_intron MGP_C3HHeJ_T0023258.1 MGP_C3HHeJ_G0016532.1 mouse_genomes_project 1 175912791 175926832 - MGP_C3HHeJ_P0023258 Slamf7 protein_coding protein_coding MGP_C3HHeJ_T0023259.1 MGP_C3HHeJ_G0016532.1 mouse_genomes_project 1 175913585 175926912 - MGP_C3HHeJ_P0023259 Slamf7 protein_coding protein_coding MGP_C3HHeJ_T0023260.1 MGP_C3HHeJ_G0016532.1 mouse_genomes_project 1 175914098 175926832 - MGP_C3HHeJ_P0023260 Slamf7 protein_coding protein_coding MGP_C3HHeJ_T0023115.1 MGP_C3HHeJ_G0016504.1 mouse_genomes_project 1 174939449 174949392 - Fcgr3 protein_coding retained_intron MGP_C3HHeJ_T0023116.1 MGP_C3HHeJ_G0016504.1 mouse_genomes_project 1 174941804 174950753 - MGP_C3HHeJ_P0023116 Fcgr3 protein_coding protein_coding MGP_C3HHeJ_T0023117.1 MGP_C3HHeJ_G0016504.1 mouse_genomes_project 1 174941824 174950753 - MGP_C3HHeJ_P0023117 Fcgr3 protein_coding protein_coding MGP_C3HHeJ_T0000384.1 MGP_C3HHeJ_G0000332.1 mouse_genomes_project 1 23365109 23370561 - TEC TEC MGP_C3HHeJ_T0023379.1 MGP_C3HHeJ_G0016561.1 mouse_genomes_project 1 177227084 177228165 - MGP_C3HHeJ_P0023379 Apcs protein_coding protein_coding MGP_C3HHeJ_T0012256.1 MGP_C3HHeJ_G0010360.1 mouse_genomes_project 1 188751617 188752083 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011970.1 MGP_C3HHeJ_G0010074.1 mouse_genomes_project 1 60903546 60904098 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000676.1 MGP_C3HHeJ_G0000621.1 mouse_genomes_project 1 162808441 162808853 - TEC TEC MGP_C3HHeJ_T0098617.1 MGP_C3HHeJ_G0036811.1 mouse_genomes_project 1 58082809 58082916 - Gm23966 snRNA snRNA MGP_C3HHeJ_T0000433.1 MGP_C3HHeJ_G0000380.1 mouse_genomes_project 1 44190013 44197220 - TEC TEC MGP_C3HHeJ_T0099847.1 MGP_C3HHeJ_G0038041.1 mouse_genomes_project 1 57758800 57758908 - Gm24548 snoRNA snoRNA MGP_C3HHeJ_T0099894.1 MGP_C3HHeJ_G0038088.1 mouse_genomes_project 1 157383749 157383854 - Gm25336 snoRNA snoRNA MGP_C3HHeJ_T0000503.1 MGP_C3HHeJ_G0000450.1 mouse_genomes_project 1 81215584 81217524 - TEC TEC MGP_C3HHeJ_T0012164.1 MGP_C3HHeJ_G0010268.1 mouse_genomes_project 1 147150425 147152096 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000323.1 MGP_C3HHeJ_G0000273.1 mouse_genomes_project 1 505444 507753 - TEC TEC MGP_C3HHeJ_T0012004.1 MGP_C3HHeJ_G0010108.1 mouse_genomes_project 1 71921709 71922060 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011875.1 MGP_C3HHeJ_G0009979.1 mouse_genomes_project 1 32859449 32860095 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012194.1 MGP_C3HHeJ_G0010298.1 mouse_genomes_project 1 158512462 158513044 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011925.1 MGP_C3HHeJ_G0010029.1 mouse_genomes_project 1 48623844 48624284 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020762.1 MGP_C3HHeJ_G0016006.1 mouse_genomes_project 1 86735073 86747336 + MGP_C3HHeJ_P0020762 2810459M11Rik protein_coding protein_coding MGP_C3HHeJ_T0020763.1 MGP_C3HHeJ_G0016006.1 mouse_genomes_project 1 86735073 86745230 + MGP_C3HHeJ_P0020763 2810459M11Rik protein_coding protein_coding MGP_C3HHeJ_T0099868.1 MGP_C3HHeJ_G0038062.1 mouse_genomes_project 1 98063962 98064090 + Gm26078 snoRNA snoRNA MGP_C3HHeJ_T0011997.1 MGP_C3HHeJ_G0010101.1 mouse_genomes_project 1 67653903 67655887 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005600.1 MGP_C3HHeJ_G0004706.1 mouse_genomes_project 1 32610528 32616785 - Gm37233 lincRNA lincRNA MGP_C3HHeJ_T0021915.1 MGP_C3HHeJ_G0016260.1 mouse_genomes_project 1 136145586 136150593 - MGP_C3HHeJ_P0021915 Zbed6 protein_coding protein_coding MGP_C3HHeJ_T0011168.1 MGP_C3HHeJ_G0009301.1 mouse_genomes_project 1 196581913 196582021 + Gm24748 misc_RNA misc_RNA MGP_C3HHeJ_T0021741.1 MGP_C3HHeJ_G0016226.1 mouse_genomes_project 1 134093450 134121095 + MGP_C3HHeJ_P0021741 Rab7b protein_coding protein_coding MGP_C3HHeJ_T0021742.1 MGP_C3HHeJ_G0016226.1 mouse_genomes_project 1 134093462 134118410 + MGP_C3HHeJ_P0021742 Rab7b protein_coding protein_coding MGP_C3HHeJ_T0021743.1 MGP_C3HHeJ_G0016226.1 mouse_genomes_project 1 134093493 134117322 + MGP_C3HHeJ_P0021743 Rab7b protein_coding protein_coding MGP_C3HHeJ_T0021744.1 MGP_C3HHeJ_G0016226.1 mouse_genomes_project 1 134093521 134117489 + MGP_C3HHeJ_P0021744 Rab7b protein_coding protein_coding MGP_C3HHeJ_T0021745.1 MGP_C3HHeJ_G0016226.1 mouse_genomes_project 1 134102503 134111694 + Rab7b protein_coding processed_transcript MGP_C3HHeJ_T0011888.1 MGP_C3HHeJ_G0009992.1 mouse_genomes_project 1 37730691 37731246 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005720.1 MGP_C3HHeJ_G0004789.1 mouse_genomes_project 1 76740527 76847488 + Gm29069 lincRNA lincRNA MGP_C3HHeJ_T0101100.1 MGP_C3HHeJ_G0039283.1 mouse_genomes_project 1 187661093 187662027 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101101.1 MGP_C3HHeJ_G0039283.1 mouse_genomes_project 1 187661515 187676826 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0012192.1 MGP_C3HHeJ_G0010296.1 mouse_genomes_project 1 158356973 158357184 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098648.1 MGP_C3HHeJ_G0036842.1 mouse_genomes_project 1 131149409 131149520 - Gm23056 snRNA snRNA MGP_C3HHeJ_T0012186.1 MGP_C3HHeJ_G0010290.1 mouse_genomes_project 1 155321530 155322335 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101082.1 MGP_C3HHeJ_G0039275.1 mouse_genomes_project 1 44749415 44759749 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101083.1 MGP_C3HHeJ_G0039275.1 mouse_genomes_project 1 44749758 44759717 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101084.1 MGP_C3HHeJ_G0039275.1 mouse_genomes_project 1 44758910 44759526 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0098310.1 MGP_C3HHeJ_G0036522.1 mouse_genomes_project 1 36450166 36451177 - Gm37062 sense_intronic sense_intronic MGP_C3HHeJ_T0005797.1 MGP_C3HHeJ_G0004854.1 mouse_genomes_project 1 120342214 120349206 + Gm28867 lincRNA lincRNA MGP_C3HHeJ_T0011856.1 MGP_C3HHeJ_G0009960.1 mouse_genomes_project 1 29328891 29329533 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101559.1 MGP_C3HHeJ_G0039525.1 mouse_genomes_project 1 88928072 88928821 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0021750.1 MGP_C3HHeJ_G0016228.1 mouse_genomes_project 1 134202556 134227351 + MGP_C3HHeJ_P0021750 Pm20d1 protein_coding protein_coding MGP_C3HHeJ_T0021751.1 MGP_C3HHeJ_G0016228.1 mouse_genomes_project 1 134202573 134227363 + MGP_C3HHeJ_P0021751 Pm20d1 protein_coding protein_coding MGP_C3HHeJ_T0021752.1 MGP_C3HHeJ_G0016228.1 mouse_genomes_project 1 134217306 134221542 + MGP_C3HHeJ_P0021752 Pm20d1 protein_coding protein_coding MGP_C3HHeJ_T0021753.1 MGP_C3HHeJ_G0016228.1 mouse_genomes_project 1 134217344 134217582 + Pm20d1 protein_coding processed_transcript MGP_C3HHeJ_T0101607.1 MGP_C3HHeJ_G0039573.1 mouse_genomes_project 1 186037238 186037349 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0002926.1 MGP_C3HHeJ_G0002748.1 mouse_genomes_project 1 197245099 197246723 - Gm38037 antisense antisense MGP_C3HHeJ_T0022532.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159353889 159386404 - MGP_C3HHeJ_P0022532 Tor1aip1 protein_coding protein_coding MGP_C3HHeJ_T0022533.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159353904 159388008 - MGP_C3HHeJ_P0022533 Tor1aip1 protein_coding protein_coding MGP_C3HHeJ_T0022534.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159355952 159388061 - MGP_C3HHeJ_P0022534 Tor1aip1 protein_coding protein_coding MGP_C3HHeJ_T0022535.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159356702 159384539 - MGP_C3HHeJ_P0022535 Tor1aip1 protein_coding protein_coding MGP_C3HHeJ_T0022536.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159356743 159386467 - MGP_C3HHeJ_P0022536 Tor1aip1 protein_coding protein_coding MGP_C3HHeJ_T0022537.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159356743 159388061 - MGP_C3HHeJ_P0022537 Tor1aip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022538.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159367112 159368387 - Tor1aip1 protein_coding retained_intron MGP_C3HHeJ_T0022539.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159367997 159387816 - MGP_C3HHeJ_P0022539 Tor1aip1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0022540.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159372982 159387631 - MGP_C3HHeJ_P0022540 Tor1aip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022541.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159381806 159387728 - Tor1aip1 protein_coding retained_intron MGP_C3HHeJ_T0098635.1 MGP_C3HHeJ_G0036829.1 mouse_genomes_project 1 94537299 94537402 + Gm26446 snRNA snRNA MGP_C3HHeJ_T0023276.1 MGP_C3HHeJ_G0016538.1 mouse_genomes_project 1 176298530 176325862 - MGP_C3HHeJ_P0023276 Vangl2 protein_coding protein_coding MGP_C3HHeJ_T0023277.1 MGP_C3HHeJ_G0016538.1 mouse_genomes_project 1 176298530 176324710 - MGP_C3HHeJ_P0023277 Vangl2 protein_coding protein_coding MGP_C3HHeJ_T0023278.1 MGP_C3HHeJ_G0016538.1 mouse_genomes_project 1 176301872 176324710 - MGP_C3HHeJ_P0023278 Vangl2 protein_coding protein_coding MGP_C3HHeJ_T0023279.1 MGP_C3HHeJ_G0016538.1 mouse_genomes_project 1 176302214 176306469 - Vangl2 protein_coding processed_transcript MGP_C3HHeJ_T0023280.1 MGP_C3HHeJ_G0016538.1 mouse_genomes_project 1 176307294 176324124 - MGP_C3HHeJ_P0023280 Vangl2 protein_coding protein_coding MGP_C3HHeJ_T0023281.1 MGP_C3HHeJ_G0016538.1 mouse_genomes_project 1 176307377 176324683 - MGP_C3HHeJ_P0023281 Vangl2 protein_coding protein_coding MGP_C3HHeJ_T0101605.1 MGP_C3HHeJ_G0039571.1 mouse_genomes_project 1 182756815 182765922 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0023583.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 184916684 185123812 + MGP_C3HHeJ_P0023583 Cdc42bpa protein_coding protein_coding MGP_C3HHeJ_T0023584.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 184916797 185126259 + MGP_C3HHeJ_P0023584 Cdc42bpa protein_coding protein_coding MGP_C3HHeJ_T0023585.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 184916972 185070273 + MGP_C3HHeJ_P0023585 Cdc42bpa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023586.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 184917322 185122822 + MGP_C3HHeJ_P0023586 Cdc42bpa protein_coding protein_coding MGP_C3HHeJ_T0023587.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 184917322 185122822 + MGP_C3HHeJ_P0023587 Cdc42bpa protein_coding protein_coding MGP_C3HHeJ_T0023588.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 184931825 184998890 + Cdc42bpa protein_coding processed_transcript MGP_C3HHeJ_T0023589.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 184947582 184995635 + Cdc42bpa protein_coding retained_intron MGP_C3HHeJ_T0023590.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185042864 185053228 + Cdc42bpa protein_coding retained_intron MGP_C3HHeJ_T0023591.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185059525 185123244 + MGP_C3HHeJ_P0023591 Cdc42bpa protein_coding protein_coding MGP_C3HHeJ_T0023592.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185065398 185077339 + Cdc42bpa protein_coding retained_intron MGP_C3HHeJ_T0023593.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185067373 185070548 + Cdc42bpa protein_coding retained_intron MGP_C3HHeJ_T0023594.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185067573 185126258 + MGP_C3HHeJ_P0023594 Cdc42bpa protein_coding protein_coding MGP_C3HHeJ_T0023595.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185067646 185109893 + MGP_C3HHeJ_P0023595 Cdc42bpa protein_coding protein_coding MGP_C3HHeJ_T0023596.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185069720 185097460 + MGP_C3HHeJ_P0023596 Cdc42bpa protein_coding protein_coding MGP_C3HHeJ_T0023597.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185069738 185074689 + Cdc42bpa protein_coding retained_intron MGP_C3HHeJ_T0023598.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185081972 185099288 + Cdc42bpa protein_coding processed_transcript MGP_C3HHeJ_T0023599.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185121662 185122950 + Cdc42bpa protein_coding retained_intron MGP_C3HHeJ_T0019802.1 MGP_C3HHeJ_G0015832.1 mouse_genomes_project 1 58839400 58857739 - MGP_C3HHeJ_P0019802 Tmem237 protein_coding protein_coding MGP_C3HHeJ_T0019803.1 MGP_C3HHeJ_G0015832.1 mouse_genomes_project 1 58839407 58857451 - MGP_C3HHeJ_P0019803 Tmem237 protein_coding protein_coding MGP_C3HHeJ_T0019804.1 MGP_C3HHeJ_G0015832.1 mouse_genomes_project 1 58839721 58858022 - MGP_C3HHeJ_P0019804 Tmem237 protein_coding protein_coding MGP_C3HHeJ_T0019805.1 MGP_C3HHeJ_G0015832.1 mouse_genomes_project 1 58846034 58857752 - MGP_C3HHeJ_P0019805 Tmem237 protein_coding protein_coding MGP_C3HHeJ_T0019806.1 MGP_C3HHeJ_G0015832.1 mouse_genomes_project 1 58846623 58851955 - Tmem237 protein_coding retained_intron MGP_C3HHeJ_T0019807.1 MGP_C3HHeJ_G0015832.1 mouse_genomes_project 1 58846929 58858048 - MGP_C3HHeJ_P0019807 Tmem237 protein_coding protein_coding MGP_C3HHeJ_T0019808.1 MGP_C3HHeJ_G0015832.1 mouse_genomes_project 1 58847710 58853597 - Tmem237 protein_coding retained_intron MGP_C3HHeJ_T0020139.1 MGP_C3HHeJ_G0015892.1 mouse_genomes_project 1 70919570 71086241 + MGP_C3HHeJ_P0020139 Vwc2l protein_coding protein_coding MGP_C3HHeJ_T0020140.1 MGP_C3HHeJ_G0015892.1 mouse_genomes_project 1 70919607 70926058 + Vwc2l protein_coding retained_intron MGP_C3HHeJ_T0020141.1 MGP_C3HHeJ_G0015892.1 mouse_genomes_project 1 70919757 71086226 + MGP_C3HHeJ_P0020141 Vwc2l protein_coding protein_coding MGP_C3HHeJ_T0020142.1 MGP_C3HHeJ_G0015892.1 mouse_genomes_project 1 70919778 71083333 + MGP_C3HHeJ_P0020142 Vwc2l protein_coding protein_coding MGP_C3HHeJ_T0022899.1 MGP_C3HHeJ_G0016451.1 mouse_genomes_project 1 168084181 168105497 - MGP_C3HHeJ_P0022899 Atp1b1 protein_coding protein_coding MGP_C3HHeJ_T0022900.1 MGP_C3HHeJ_G0016451.1 mouse_genomes_project 1 168088531 168090792 - Atp1b1 protein_coding processed_transcript MGP_C3HHeJ_T0022901.1 MGP_C3HHeJ_G0016451.1 mouse_genomes_project 1 168088531 168100924 - MGP_C3HHeJ_P0022901 Atp1b1 protein_coding protein_coding MGP_C3HHeJ_T0022902.1 MGP_C3HHeJ_G0016451.1 mouse_genomes_project 1 168100408 168105164 - Atp1b1 protein_coding retained_intron MGP_C3HHeJ_T0011829.1 MGP_C3HHeJ_G0009933.1 mouse_genomes_project 1 20304423 20305225 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000375.1 MGP_C3HHeJ_G0000323.1 mouse_genomes_project 1 22965170 22966201 - TEC TEC MGP_C3HHeJ_T0005904.1 MGP_C3HHeJ_G0004938.1 mouse_genomes_project 1 168733224 168737315 - 4930568G15Rik lincRNA lincRNA MGP_C3HHeJ_T0005905.1 MGP_C3HHeJ_G0004938.1 mouse_genomes_project 1 168735817 168761909 - 4930568G15Rik lincRNA lincRNA MGP_C3HHeJ_T0023007.1 MGP_C3HHeJ_G0016472.1 mouse_genomes_project 1 170201273 170217620 - MGP_C3HHeJ_P0023007 Gm4846 protein_coding protein_coding MGP_C3HHeJ_T0019562.1 MGP_C3HHeJ_G0015787.1 mouse_genomes_project 1 52425319 52547674 - MGP_C3HHeJ_P0019562 Pms1 protein_coding protein_coding MGP_C3HHeJ_T0019563.1 MGP_C3HHeJ_G0015787.1 mouse_genomes_project 1 52433058 52547673 - MGP_C3HHeJ_P0019563 Pms1 protein_coding protein_coding MGP_C3HHeJ_T0019564.1 MGP_C3HHeJ_G0015787.1 mouse_genomes_project 1 52503624 52547631 - MGP_C3HHeJ_P0019564 Pms1 protein_coding protein_coding MGP_C3HHeJ_T0019565.1 MGP_C3HHeJ_G0015787.1 mouse_genomes_project 1 52521225 52529080 - MGP_C3HHeJ_P0019565 Pms1 protein_coding protein_coding MGP_C3HHeJ_T0019566.1 MGP_C3HHeJ_G0015787.1 mouse_genomes_project 1 52521247 52547671 - MGP_C3HHeJ_P0019566 Pms1 protein_coding protein_coding MGP_C3HHeJ_T0019567.1 MGP_C3HHeJ_G0015787.1 mouse_genomes_project 1 52528618 52547671 - MGP_C3HHeJ_P0019567 Pms1 protein_coding protein_coding MGP_C3HHeJ_T0019568.1 MGP_C3HHeJ_G0015787.1 mouse_genomes_project 1 52545948 52547671 - Pms1 protein_coding retained_intron MGP_C3HHeJ_T0021863.1 MGP_C3HHeJ_G0016249.1 mouse_genomes_project 1 135600483 135609122 + MGP_C3HHeJ_P0021863 Ppp1r15b protein_coding protein_coding MGP_C3HHeJ_T0021864.1 MGP_C3HHeJ_G0016249.1 mouse_genomes_project 1 135600683 135609122 + Ppp1r15b protein_coding processed_transcript MGP_C3HHeJ_T0012067.1 MGP_C3HHeJ_G0010171.1 mouse_genomes_project 1 102858727 102859432 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011964.1 MGP_C3HHeJ_G0010068.1 mouse_genomes_project 1 60520319 60521385 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012066.1 MGP_C3HHeJ_G0010170.1 mouse_genomes_project 1 102846989 102847438 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000652.1 MGP_C3HHeJ_G0000597.1 mouse_genomes_project 1 155489693 155490042 - TEC TEC MGP_C3HHeJ_T0000541.1 MGP_C3HHeJ_G0000488.1 mouse_genomes_project 1 96903984 96905719 - TEC TEC MGP_C3HHeJ_T0011820.1 MGP_C3HHeJ_G0009924.1 mouse_genomes_project 1 17907278 17908618 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098612.1 MGP_C3HHeJ_G0036806.1 mouse_genomes_project 1 44419747 44419854 - Gm23216 snRNA snRNA MGP_C3HHeJ_T0000629.1 MGP_C3HHeJ_G0000574.1 mouse_genomes_project 1 141690901 141694289 - TEC TEC MGP_C3HHeJ_T0000762.1 MGP_C3HHeJ_G0000705.1 mouse_genomes_project 1 195227892 195231366 - TEC TEC MGP_C3HHeJ_T0012212.1 MGP_C3HHeJ_G0010316.1 mouse_genomes_project 1 167341087 167342129 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000543.1 MGP_C3HHeJ_G0000490.1 mouse_genomes_project 1 97612375 97614669 + TEC TEC MGP_C3HHeJ_T0020771.1 MGP_C3HHeJ_G0016008.1 mouse_genomes_project 1 86793294 86806238 - MGP_C3HHeJ_P0020771 Htr2b protein_coding protein_coding MGP_C3HHeJ_T0020772.1 MGP_C3HHeJ_G0016008.1 mouse_genomes_project 1 86794369 86804940 - MGP_C3HHeJ_P0020772 Htr2b protein_coding protein_coding MGP_C3HHeJ_T0023198.1 MGP_C3HHeJ_G0016518.1 mouse_genomes_project 1 175202643 175209644 - MGP_C3HHeJ_P0023198 Ufc1 protein_coding protein_coding MGP_C3HHeJ_T0023199.1 MGP_C3HHeJ_G0016518.1 mouse_genomes_project 1 175202645 175204499 - Ufc1 protein_coding retained_intron MGP_C3HHeJ_T0023200.1 MGP_C3HHeJ_G0016518.1 mouse_genomes_project 1 175202774 175209561 - MGP_C3HHeJ_P0023200 Ufc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023201.1 MGP_C3HHeJ_G0016518.1 mouse_genomes_project 1 175202792 175209607 - MGP_C3HHeJ_P0023201 Ufc1 protein_coding protein_coding MGP_C3HHeJ_T0023202.1 MGP_C3HHeJ_G0016518.1 mouse_genomes_project 1 175202857 175209560 - Ufc1 protein_coding retained_intron MGP_C3HHeJ_T0000331.1 MGP_C3HHeJ_G0000281.1 mouse_genomes_project 1 2017791 2019906 - TEC TEC MGP_C3HHeJ_T0000692.1 MGP_C3HHeJ_G0000637.1 mouse_genomes_project 1 165294092 165295215 + TEC TEC MGP_C3HHeJ_T0005923.1 MGP_C3HHeJ_G0004955.1 mouse_genomes_project 1 181061319 181166778 - lincRNA lincRNA MGP_C3HHeJ_T0023526.1 MGP_C3HHeJ_G0016612.1 mouse_genomes_project 1 182425334 182462519 - MGP_C3HHeJ_P0023526 Adss protein_coding protein_coding MGP_C3HHeJ_T0023527.1 MGP_C3HHeJ_G0016612.1 mouse_genomes_project 1 182425548 182430974 - Adss protein_coding retained_intron MGP_C3HHeJ_T0023528.1 MGP_C3HHeJ_G0016612.1 mouse_genomes_project 1 182436990 182462509 - Adss protein_coding retained_intron MGP_C3HHeJ_T0021286.1 MGP_C3HHeJ_G0016124.1 mouse_genomes_project 1 98424507 98501268 - MGP_C3HHeJ_P0021286 Slco6c1 protein_coding protein_coding MGP_C3HHeJ_T0021287.1 MGP_C3HHeJ_G0016124.1 mouse_genomes_project 1 98425095 98501363 - MGP_C3HHeJ_P0021287 Slco6c1 protein_coding protein_coding MGP_C3HHeJ_T0097958.1 MGP_C3HHeJ_G0036170.1 mouse_genomes_project 1 83164426 83164524 + n-R5s213 rRNA rRNA MGP_C3HHeJ_T0021011.1 MGP_C3HHeJ_G0016065.1 mouse_genomes_project 1 92014249 92022769 - MGP_C3HHeJ_P0021011 Rab17 protein_coding protein_coding MGP_C3HHeJ_T0021012.1 MGP_C3HHeJ_G0016065.1 mouse_genomes_project 1 92014251 92020770 - MGP_C3HHeJ_P0021012 Rab17 protein_coding protein_coding MGP_C3HHeJ_T0021013.1 MGP_C3HHeJ_G0016065.1 mouse_genomes_project 1 92014847 92022656 - Rab17 protein_coding processed_transcript MGP_C3HHeJ_T0021014.1 MGP_C3HHeJ_G0016065.1 mouse_genomes_project 1 92014970 92020720 - Rab17 protein_coding processed_transcript MGP_C3HHeJ_T0021015.1 MGP_C3HHeJ_G0016065.1 mouse_genomes_project 1 92016111 92022752 - MGP_C3HHeJ_P0021015 Rab17 protein_coding protein_coding MGP_C3HHeJ_T0012175.1 MGP_C3HHeJ_G0010279.1 mouse_genomes_project 1 152013970 152014195 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099869.1 MGP_C3HHeJ_G0038063.1 mouse_genomes_project 1 101712087 101712219 - Gm23602 snoRNA snoRNA MGP_C3HHeJ_T0005641.1 MGP_C3HHeJ_G0004730.1 mouse_genomes_project 1 42399619 42400231 + Gm29157 lincRNA lincRNA MGP_C3HHeJ_T0101540.1 MGP_C3HHeJ_G0039506.1 mouse_genomes_project 1 15415705 15426997 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0024113.1 MGP_C3HHeJ_G0016728.1 mouse_genomes_project 1 200544248 200571209 - Cd46 protein_coding retained_intron MGP_C3HHeJ_T0024114.1 MGP_C3HHeJ_G0016728.1 mouse_genomes_project 1 200544313 200596216 - MGP_C3HHeJ_P0024114 Cd46 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024115.1 MGP_C3HHeJ_G0016728.1 mouse_genomes_project 1 200544336 200586171 - Cd46 protein_coding retained_intron MGP_C3HHeJ_T0024116.1 MGP_C3HHeJ_G0016728.1 mouse_genomes_project 1 200544405 200596216 - MGP_C3HHeJ_P0024116 Cd46 protein_coding protein_coding MGP_C3HHeJ_T0022294.1 MGP_C3HHeJ_G0016341.1 mouse_genomes_project 1 153447716 153462177 + MGP_C3HHeJ_P0022294 Pdc protein_coding protein_coding MGP_C3HHeJ_T0022295.1 MGP_C3HHeJ_G0016341.1 mouse_genomes_project 1 153447716 153462176 + MGP_C3HHeJ_P0022295 Pdc protein_coding protein_coding MGP_C3HHeJ_T0022296.1 MGP_C3HHeJ_G0016341.1 mouse_genomes_project 1 153447725 153461589 + MGP_C3HHeJ_P0022296 Pdc protein_coding protein_coding MGP_C3HHeJ_T0022297.1 MGP_C3HHeJ_G0016341.1 mouse_genomes_project 1 153447728 153462174 + MGP_C3HHeJ_P0022297 Pdc protein_coding protein_coding MGP_C3HHeJ_T0005730.1 MGP_C3HHeJ_G0004798.1 mouse_genomes_project 1 80616089 80623349 + 9830004L10Rik lincRNA lincRNA MGP_C3HHeJ_T0005731.1 MGP_C3HHeJ_G0004798.1 mouse_genomes_project 1 80618270 80623349 + 9830004L10Rik lincRNA lincRNA MGP_C3HHeJ_T0005732.1 MGP_C3HHeJ_G0004798.1 mouse_genomes_project 1 80618292 80623394 + 9830004L10Rik lincRNA lincRNA MGP_C3HHeJ_T0000430.1 MGP_C3HHeJ_G0000377.1 mouse_genomes_project 1 42127160 42129651 + TEC TEC MGP_C3HHeJ_T0101089.1 MGP_C3HHeJ_G0039278.1 mouse_genomes_project 1 139446930 139447269 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0011805.1 MGP_C3HHeJ_G0009909.1 mouse_genomes_project 1 13397516 13398069 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098602.1 MGP_C3HHeJ_G0036796.1 mouse_genomes_project 1 22958496 22958603 - Gm22260 snRNA snRNA MGP_C3HHeJ_T0018625.1 MGP_C3HHeJ_G0015604.1 mouse_genomes_project 1 7159295 7172814 - MGP_C3HHeJ_P0018625 Cops5 protein_coding protein_coding MGP_C3HHeJ_T0018626.1 MGP_C3HHeJ_G0015604.1 mouse_genomes_project 1 7159537 7169816 - MGP_C3HHeJ_P0018626 Cops5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018627.1 MGP_C3HHeJ_G0015604.1 mouse_genomes_project 1 7161892 7172628 - MGP_C3HHeJ_P0018627 Cops5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018628.1 MGP_C3HHeJ_G0015604.1 mouse_genomes_project 1 7165373 7172836 - MGP_C3HHeJ_P0018628 Cops5 protein_coding protein_coding MGP_C3HHeJ_T0018629.1 MGP_C3HHeJ_G0015604.1 mouse_genomes_project 1 7165601 7172625 - Cops5 protein_coding retained_intron MGP_C3HHeJ_T0018630.1 MGP_C3HHeJ_G0015604.1 mouse_genomes_project 1 7167726 7172855 - Cops5 protein_coding retained_intron MGP_C3HHeJ_T0018631.1 MGP_C3HHeJ_G0015604.1 mouse_genomes_project 1 7171966 7172632 - Cops5 protein_coding retained_intron MGP_C3HHeJ_T0012183.1 MGP_C3HHeJ_G0010287.1 mouse_genomes_project 1 154294610 154296770 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002704.1 MGP_C3HHeJ_G0002575.1 mouse_genomes_project 1 18556400 18558025 + Gm28287 antisense antisense MGP_C3HHeJ_T0002789.1 MGP_C3HHeJ_G0002641.1 mouse_genomes_project 1 93980061 93997008 - Gm29481 antisense antisense MGP_C3HHeJ_T0002742.1 MGP_C3HHeJ_G0002606.1 mouse_genomes_project 1 57507743 57515012 - Gm17234 antisense antisense MGP_C3HHeJ_T0012037.1 MGP_C3HHeJ_G0010141.1 mouse_genomes_project 1 87923007 87924809 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002739.1 MGP_C3HHeJ_G0002604.1 mouse_genomes_project 1 54150439 54207910 + 4930444A19Rik antisense antisense MGP_C3HHeJ_T0002740.1 MGP_C3HHeJ_G0002604.1 mouse_genomes_project 1 54159175 54238605 + 4930444A19Rik antisense antisense MGP_C3HHeJ_T0018735.1 MGP_C3HHeJ_G0015619.1 mouse_genomes_project 1 12178418 12224430 - MGP_C3HHeJ_P0018735 Trpa1 protein_coding protein_coding MGP_C3HHeJ_T0000660.1 MGP_C3HHeJ_G0000605.1 mouse_genomes_project 1 159323599 159324808 + TEC TEC MGP_C3HHeJ_T0011749.1 MGP_C3HHeJ_G0009853.1 mouse_genomes_project 1 574218 575144 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012023.1 MGP_C3HHeJ_G0010127.1 mouse_genomes_project 1 83313219 83313402 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023976.1 MGP_C3HHeJ_G0016704.1 mouse_genomes_project 1 196718415 196743736 + MGP_C3HHeJ_P0023976 Tmem206 protein_coding protein_coding MGP_C3HHeJ_T0002732.1 MGP_C3HHeJ_G0002598.1 mouse_genomes_project 1 41714177 41715425 + 8430432A02Rik antisense antisense MGP_C3HHeJ_T0023142.1 MGP_C3HHeJ_G0016510.1 mouse_genomes_project 1 175128062 175134569 - MGP_C3HHeJ_P0023142 Tomm40l protein_coding protein_coding MGP_C3HHeJ_T0023143.1 MGP_C3HHeJ_G0016510.1 mouse_genomes_project 1 175129854 175134503 - MGP_C3HHeJ_P0023143 Tomm40l protein_coding protein_coding MGP_C3HHeJ_T0023144.1 MGP_C3HHeJ_G0016510.1 mouse_genomes_project 1 175129854 175134239 - MGP_C3HHeJ_P0023144 Tomm40l protein_coding protein_coding MGP_C3HHeJ_T0023145.1 MGP_C3HHeJ_G0016510.1 mouse_genomes_project 1 175130415 175134506 - MGP_C3HHeJ_P0023145 Tomm40l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023146.1 MGP_C3HHeJ_G0016510.1 mouse_genomes_project 1 175132880 175134515 - MGP_C3HHeJ_P0023146 Tomm40l protein_coding protein_coding MGP_C3HHeJ_T0023147.1 MGP_C3HHeJ_G0016510.1 mouse_genomes_project 1 175132951 175134499 - MGP_C3HHeJ_P0023147 Tomm40l protein_coding protein_coding MGP_C3HHeJ_T0023148.1 MGP_C3HHeJ_G0016510.1 mouse_genomes_project 1 175133140 175134487 - Tomm40l protein_coding processed_transcript MGP_C3HHeJ_T0023149.1 MGP_C3HHeJ_G0016510.1 mouse_genomes_project 1 175133233 175134551 - Tomm40l protein_coding retained_intron MGP_C3HHeJ_T0012238.1 MGP_C3HHeJ_G0010342.1 mouse_genomes_project 1 181468610 181468915 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022159.1 MGP_C3HHeJ_G0016313.1 mouse_genomes_project 1 139501800 139625330 - MGP_C3HHeJ_P0022159 Nr5a2 protein_coding protein_coding MGP_C3HHeJ_T0022160.1 MGP_C3HHeJ_G0016313.1 mouse_genomes_project 1 139503505 139613682 - MGP_C3HHeJ_P0022160 Nr5a2 protein_coding protein_coding MGP_C3HHeJ_T0022161.1 MGP_C3HHeJ_G0016313.1 mouse_genomes_project 1 139504543 139625262 - MGP_C3HHeJ_P0022161 Nr5a2 protein_coding protein_coding MGP_C3HHeJ_T0022162.1 MGP_C3HHeJ_G0016313.1 mouse_genomes_project 1 139504692 139617546 - MGP_C3HHeJ_P0022162 Nr5a2 protein_coding protein_coding MGP_C3HHeJ_T0022163.1 MGP_C3HHeJ_G0016313.1 mouse_genomes_project 1 139551138 139604717 - Nr5a2 protein_coding retained_intron MGP_C3HHeJ_T0022164.1 MGP_C3HHeJ_G0016313.1 mouse_genomes_project 1 139605118 139613293 - MGP_C3HHeJ_P0022164 Nr5a2 protein_coding protein_coding MGP_C3HHeJ_T0005878.1 MGP_C3HHeJ_G0004919.1 mouse_genomes_project 1 158870237 158877534 - Gm5532 lincRNA lincRNA MGP_C3HHeJ_T0005879.1 MGP_C3HHeJ_G0004919.1 mouse_genomes_project 1 158875438 158877566 - Gm5532 lincRNA lincRNA MGP_C3HHeJ_T0098624.1 MGP_C3HHeJ_G0036818.1 mouse_genomes_project 1 68472429 68472523 - Gm25542 snRNA snRNA MGP_C3HHeJ_T0000539.1 MGP_C3HHeJ_G0000486.1 mouse_genomes_project 1 94713532 94715919 + TEC TEC MGP_C3HHeJ_T0000607.1 MGP_C3HHeJ_G0000553.1 mouse_genomes_project 1 136979209 136980191 - TEC TEC MGP_C3HHeJ_T0022188.1 MGP_C3HHeJ_G0016318.1 mouse_genomes_project 1 141578287 141583155 - MGP_C3HHeJ_P0022188 2310009B15Rik protein_coding protein_coding MGP_C3HHeJ_T0022189.1 MGP_C3HHeJ_G0016318.1 mouse_genomes_project 1 141578288 141580655 - 2310009B15Rik protein_coding retained_intron MGP_C3HHeJ_T0022190.1 MGP_C3HHeJ_G0016318.1 mouse_genomes_project 1 141578337 141583150 - MGP_C3HHeJ_P0022190 2310009B15Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000351.1 MGP_C3HHeJ_G0000301.1 mouse_genomes_project 1 10534565 10536487 - TEC TEC MGP_C3HHeJ_T0005961.1 MGP_C3HHeJ_G0004981.1 mouse_genomes_project 1 189866835 189869750 + Gm34342 lincRNA lincRNA MGP_C3HHeJ_T0000654.1 MGP_C3HHeJ_G0000599.1 mouse_genomes_project 1 156510334 156513675 - TEC TEC MGP_C3HHeJ_T0005652.1 MGP_C3HHeJ_G0004740.1 mouse_genomes_project 1 50736626 50741863 - Gm17767 lincRNA lincRNA MGP_C3HHeJ_T0005653.1 MGP_C3HHeJ_G0004740.1 mouse_genomes_project 1 50739038 50829146 - Gm17767 lincRNA lincRNA MGP_C3HHeJ_T0005832.1 MGP_C3HHeJ_G0004882.1 mouse_genomes_project 1 136336682 136339882 + Gm28441 lincRNA lincRNA MGP_C3HHeJ_T0019460.1 MGP_C3HHeJ_G0015771.1 mouse_genomes_project 1 45910161 45955755 - MGP_C3HHeJ_P0019460 Slc39a10 protein_coding protein_coding MGP_C3HHeJ_T0019461.1 MGP_C3HHeJ_G0015771.1 mouse_genomes_project 1 45919624 45937898 - Slc39a10 protein_coding retained_intron MGP_C3HHeJ_T0019462.1 MGP_C3HHeJ_G0015771.1 mouse_genomes_project 1 45937638 45993888 - MGP_C3HHeJ_P0019462 Slc39a10 protein_coding protein_coding MGP_C3HHeJ_T0019463.1 MGP_C3HHeJ_G0015771.1 mouse_genomes_project 1 45937736 45989107 - MGP_C3HHeJ_P0019463 Slc39a10 protein_coding protein_coding MGP_C3HHeJ_T0000531.1 MGP_C3HHeJ_G0000478.1 mouse_genomes_project 1 90834380 90836419 + TEC TEC MGP_C3HHeJ_T0019825.1 MGP_C3HHeJ_G0015835.1 mouse_genomes_project 1 58999168 59098153 + MGP_C3HHeJ_P0019825 Cdk15 protein_coding protein_coding MGP_C3HHeJ_T0019826.1 MGP_C3HHeJ_G0015835.1 mouse_genomes_project 1 58999169 59097703 + MGP_C3HHeJ_P0019826 Cdk15 protein_coding protein_coding MGP_C3HHeJ_T0019827.1 MGP_C3HHeJ_G0015835.1 mouse_genomes_project 1 58999390 59000141 + Cdk15 protein_coding processed_transcript MGP_C3HHeJ_T0019828.1 MGP_C3HHeJ_G0015835.1 mouse_genomes_project 1 59046903 59097782 + Cdk15 protein_coding processed_transcript MGP_C3HHeJ_T0023600.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185125893 185154141 - MGP_C3HHeJ_P0023600 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023601.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185125893 185156676 - MGP_C3HHeJ_P0023601 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023602.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185127674 185156594 - MGP_C3HHeJ_P0023602 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023603.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185127806 185139287 - MGP_C3HHeJ_P0023603 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023604.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185128046 185156637 - MGP_C3HHeJ_P0023604 Coq8a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023605.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185130778 185156617 - MGP_C3HHeJ_P0023605 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023606.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185130785 185142753 - MGP_C3HHeJ_P0023606 Coq8a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023607.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185131860 185139578 - Coq8a protein_coding retained_intron MGP_C3HHeJ_T0023608.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185139662 185156617 - MGP_C3HHeJ_P0023608 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023609.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185139727 185154139 - MGP_C3HHeJ_P0023609 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023610.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185139764 185156731 - MGP_C3HHeJ_P0023610 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023611.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185139791 185143456 - MGP_C3HHeJ_P0023611 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023612.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185139797 185156628 - MGP_C3HHeJ_P0023612 Coq8a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023613.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185139800 185154318 - MGP_C3HHeJ_P0023613 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023614.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185139851 185156628 - MGP_C3HHeJ_P0023614 Coq8a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023615.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185139903 185161190 - MGP_C3HHeJ_P0023615 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023616.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185142828 185156558 - MGP_C3HHeJ_P0023616 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0011944.1 MGP_C3HHeJ_G0010048.1 mouse_genomes_project 1 54654429 54659179 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018519.1 MGP_C3HHeJ_G0015586.1 mouse_genomes_project 1 1987592 2103765 - MGP_C3HHeJ_P0018519 Rgs20 protein_coding protein_coding MGP_C3HHeJ_T0018520.1 MGP_C3HHeJ_G0015586.1 mouse_genomes_project 1 1987595 2159347 - MGP_C3HHeJ_P0018520 Rgs20 protein_coding protein_coding MGP_C3HHeJ_T0018521.1 MGP_C3HHeJ_G0015586.1 mouse_genomes_project 1 1988465 2103765 - MGP_C3HHeJ_P0018521 Rgs20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018522.1 MGP_C3HHeJ_G0015586.1 mouse_genomes_project 1 1990333 2159344 - MGP_C3HHeJ_P0018522 Rgs20 protein_coding protein_coding MGP_C3HHeJ_T0018523.1 MGP_C3HHeJ_G0015586.1 mouse_genomes_project 1 2001967 2103765 - Rgs20 protein_coding retained_intron MGP_C3HHeJ_T0018524.1 MGP_C3HHeJ_G0015586.1 mouse_genomes_project 1 2151226 2159335 - Rgs20 protein_coding processed_transcript MGP_C3HHeJ_T0016745.1 MGP_C3HHeJ_G0014848.1 mouse_genomes_project 1 6675262 6743999 - 2610203C22Rik processed_transcript antisense MGP_C3HHeJ_T0016746.1 MGP_C3HHeJ_G0014848.1 mouse_genomes_project 1 6677880 6744044 - 2610203C22Rik processed_transcript retained_intron MGP_C3HHeJ_T0016747.1 MGP_C3HHeJ_G0014848.1 mouse_genomes_project 1 6713649 6744051 - 2610203C22Rik processed_transcript antisense MGP_C3HHeJ_T0016748.1 MGP_C3HHeJ_G0014848.1 mouse_genomes_project 1 6714254 6744082 - 2610203C22Rik processed_transcript antisense MGP_C3HHeJ_T0016749.1 MGP_C3HHeJ_G0014848.1 mouse_genomes_project 1 6716657 6744071 - 2610203C22Rik processed_transcript antisense MGP_C3HHeJ_T0000517.1 MGP_C3HHeJ_G0000464.1 mouse_genomes_project 1 87319834 87321009 + TEC TEC MGP_C3HHeJ_T0000458.1 MGP_C3HHeJ_G0000405.1 mouse_genomes_project 1 60691710 60693111 + TEC TEC MGP_C3HHeJ_T0005918.1 MGP_C3HHeJ_G0004950.1 mouse_genomes_project 1 174851001 174855563 + Gm10522 lincRNA lincRNA MGP_C3HHeJ_T0005791.1 MGP_C3HHeJ_G0004850.1 mouse_genomes_project 1 109688207 109722175 + D830032E09Rik lincRNA lincRNA MGP_C3HHeJ_T0005792.1 MGP_C3HHeJ_G0004850.1 mouse_genomes_project 1 109688233 109722188 + D830032E09Rik lincRNA lincRNA MGP_C3HHeJ_T0005793.1 MGP_C3HHeJ_G0004850.1 mouse_genomes_project 1 109707654 109802057 + D830032E09Rik lincRNA lincRNA MGP_C3HHeJ_T0005774.1 MGP_C3HHeJ_G0004836.1 mouse_genomes_project 1 97285171 97317074 - 1700063A18Rik lincRNA lincRNA MGP_C3HHeJ_T0002738.1 MGP_C3HHeJ_G0002603.1 mouse_genomes_project 1 52432059 52433642 + Gm28777 antisense antisense MGP_C3HHeJ_T0098309.1 MGP_C3HHeJ_G0036521.1 mouse_genomes_project 1 35212599 35215530 - Gm38115 sense_intronic sense_intronic MGP_C3HHeJ_T0012120.1 MGP_C3HHeJ_G0010224.1 mouse_genomes_project 1 123581490 123581955 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005624.1 MGP_C3HHeJ_G0004724.1 mouse_genomes_project 1 40823941 40824404 - Gm29664 lincRNA lincRNA MGP_C3HHeJ_T0020675.1 MGP_C3HHeJ_G0015990.1 mouse_genomes_project 1 83619814 83620806 + MGP_C3HHeJ_P0020675 Krtap28-13 protein_coding protein_coding MGP_C3HHeJ_T0018892.1 MGP_C3HHeJ_G0015660.1 mouse_genomes_project 1 21803599 21881806 + MGP_C3HHeJ_P0018892 Col9a1 protein_coding protein_coding MGP_C3HHeJ_T0018893.1 MGP_C3HHeJ_G0015660.1 mouse_genomes_project 1 21823142 21881806 + MGP_C3HHeJ_P0018893 Col9a1 protein_coding protein_coding MGP_C3HHeJ_T0018894.1 MGP_C3HHeJ_G0015660.1 mouse_genomes_project 1 21824972 21849081 + Col9a1 protein_coding processed_transcript MGP_C3HHeJ_T0018895.1 MGP_C3HHeJ_G0015660.1 mouse_genomes_project 1 21857814 21859253 + Col9a1 protein_coding processed_transcript MGP_C3HHeJ_T0099899.1 MGP_C3HHeJ_G0038093.1 mouse_genomes_project 1 164588810 164588872 + Gm22489 snoRNA snoRNA MGP_C3HHeJ_T0018611.1 MGP_C3HHeJ_G0015601.1 mouse_genomes_project 1 7029033 7070467 + MGP_C3HHeJ_P0018611 Mcmdc2 protein_coding protein_coding MGP_C3HHeJ_T0018612.1 MGP_C3HHeJ_G0015601.1 mouse_genomes_project 1 7029033 7045202 + MGP_C3HHeJ_P0018612 Mcmdc2 protein_coding protein_coding MGP_C3HHeJ_T0018613.1 MGP_C3HHeJ_G0015601.1 mouse_genomes_project 1 7029063 7069967 + MGP_C3HHeJ_P0018613 Mcmdc2 protein_coding protein_coding MGP_C3HHeJ_T0018614.1 MGP_C3HHeJ_G0015601.1 mouse_genomes_project 1 7029065 7071597 + MGP_C3HHeJ_P0018614 Mcmdc2 protein_coding protein_coding MGP_C3HHeJ_T0018615.1 MGP_C3HHeJ_G0015601.1 mouse_genomes_project 1 7031732 7043943 + MGP_C3HHeJ_P0018615 Mcmdc2 protein_coding protein_coding MGP_C3HHeJ_T0018616.1 MGP_C3HHeJ_G0015601.1 mouse_genomes_project 1 7061773 7070467 + MGP_C3HHeJ_P0018616 Mcmdc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021517.1 MGP_C3HHeJ_G0016175.1 mouse_genomes_project 1 122391831 122394422 + MGP_C3HHeJ_P0021517 C1ql2 protein_coding protein_coding MGP_C3HHeJ_T0021061.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92449522 92473999 - MGP_C3HHeJ_P0021061 Ilkap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021062.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92449526 92459983 - MGP_C3HHeJ_P0021062 Ilkap protein_coding protein_coding MGP_C3HHeJ_T0021063.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92451491 92474082 - MGP_C3HHeJ_P0021063 Ilkap protein_coding protein_coding MGP_C3HHeJ_T0021064.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92451492 92474054 - Ilkap protein_coding retained_intron MGP_C3HHeJ_T0021065.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92451619 92459930 - MGP_C3HHeJ_P0021065 Ilkap protein_coding protein_coding MGP_C3HHeJ_T0021066.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92451671 92454559 - Ilkap protein_coding retained_intron MGP_C3HHeJ_T0021067.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92451714 92474092 - MGP_C3HHeJ_P0021067 Ilkap protein_coding protein_coding MGP_C3HHeJ_T0021068.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92451715 92474100 - MGP_C3HHeJ_P0021068 Ilkap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021069.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92456396 92474114 - Ilkap protein_coding processed_transcript MGP_C3HHeJ_T0021070.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92459981 92474084 - MGP_C3HHeJ_P0021070 Ilkap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021071.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92460611 92464161 - Ilkap protein_coding retained_intron MGP_C3HHeJ_T0021072.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92460700 92474077 - MGP_C3HHeJ_P0021072 Ilkap protein_coding protein_coding MGP_C3HHeJ_T0021073.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92465588 92474093 - Ilkap protein_coding retained_intron MGP_C3HHeJ_T0023515.1 MGP_C3HHeJ_G0016609.1 mouse_genomes_project 1 181654998 181891526 - MGP_C3HHeJ_P0023515 Akt3 protein_coding protein_coding MGP_C3HHeJ_T0023516.1 MGP_C3HHeJ_G0016609.1 mouse_genomes_project 1 181657040 181891497 - MGP_C3HHeJ_P0023516 Akt3 protein_coding protein_coding MGP_C3HHeJ_T0023517.1 MGP_C3HHeJ_G0016609.1 mouse_genomes_project 1 181657041 181900894 - MGP_C3HHeJ_P0023517 Akt3 protein_coding protein_coding MGP_C3HHeJ_T0097962.1 MGP_C3HHeJ_G0036174.1 mouse_genomes_project 1 91359242 91359349 + Gm27648 rRNA rRNA MGP_C3HHeJ_T0098608.1 MGP_C3HHeJ_G0036802.1 mouse_genomes_project 1 31432367 31432467 + Gm25792 snRNA snRNA MGP_C3HHeJ_T0023221.1 MGP_C3HHeJ_G0016521.1 mouse_genomes_project 1 175259257 175274909 + MGP_C3HHeJ_P0023221 Pfdn2 protein_coding protein_coding MGP_C3HHeJ_T0023222.1 MGP_C3HHeJ_G0016521.1 mouse_genomes_project 1 175272037 175273621 + Pfdn2 protein_coding processed_transcript MGP_C3HHeJ_T0023855.1 MGP_C3HHeJ_G0016681.1 mouse_genomes_project 1 191936029 191961299 - MGP_C3HHeJ_P0023855 Rrp15 protein_coding protein_coding MGP_C3HHeJ_T0023856.1 MGP_C3HHeJ_G0016681.1 mouse_genomes_project 1 191936143 191961266 - Rrp15 protein_coding retained_intron MGP_C3HHeJ_T0005596.1 MGP_C3HHeJ_G0004702.1 mouse_genomes_project 1 29031573 29110391 - lincRNA lincRNA MGP_C3HHeJ_T0011771.1 MGP_C3HHeJ_G0009875.1 mouse_genomes_project 1 4332232 4332410 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021761.1 MGP_C3HHeJ_G0016231.1 mouse_genomes_project 1 134323933 134347845 + MGP_C3HHeJ_P0021761 Nucks1 protein_coding protein_coding MGP_C3HHeJ_T0021762.1 MGP_C3HHeJ_G0016231.1 mouse_genomes_project 1 134323955 134351587 + MGP_C3HHeJ_P0021762 Nucks1 protein_coding protein_coding MGP_C3HHeJ_T0021763.1 MGP_C3HHeJ_G0016231.1 mouse_genomes_project 1 134344328 134345237 + Nucks1 protein_coding retained_intron MGP_C3HHeJ_T0019535.1 MGP_C3HHeJ_G0015781.1 mouse_genomes_project 1 51893824 51962680 - MGP_C3HHeJ_P0019535 Mfsd6 protein_coding protein_coding MGP_C3HHeJ_T0019536.1 MGP_C3HHeJ_G0015781.1 mouse_genomes_project 1 51893836 51962263 - MGP_C3HHeJ_P0019536 Mfsd6 protein_coding protein_coding MGP_C3HHeJ_T0019537.1 MGP_C3HHeJ_G0015781.1 mouse_genomes_project 1 51894973 51897837 - Mfsd6 protein_coding retained_intron MGP_C3HHeJ_T0019538.1 MGP_C3HHeJ_G0015781.1 mouse_genomes_project 1 51897524 51962680 - MGP_C3HHeJ_P0019538 Mfsd6 protein_coding protein_coding MGP_C3HHeJ_T0019539.1 MGP_C3HHeJ_G0015781.1 mouse_genomes_project 1 51898441 51908278 - Mfsd6 protein_coding processed_transcript MGP_C3HHeJ_T0019540.1 MGP_C3HHeJ_G0015781.1 mouse_genomes_project 1 51914549 51962576 - Mfsd6 protein_coding retained_intron MGP_C3HHeJ_T0012121.1 MGP_C3HHeJ_G0010225.1 mouse_genomes_project 1 123706560 123706743 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101090.1 MGP_C3HHeJ_G0039279.1 mouse_genomes_project 1 160185124 160187598 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101091.1 MGP_C3HHeJ_G0039279.1 mouse_genomes_project 1 160185425 160185736 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0000770.1 MGP_C3HHeJ_G0000712.1 mouse_genomes_project 1 198708154 198710727 + TEC TEC MGP_C3HHeJ_T0002917.1 MGP_C3HHeJ_G0002741.1 mouse_genomes_project 1 194630587 194632053 + A430027H14Rik antisense antisense MGP_C3HHeJ_T0002918.1 MGP_C3HHeJ_G0002741.1 mouse_genomes_project 1 194631140 194632029 + A430027H14Rik antisense antisense MGP_C3HHeJ_T0012263.1 MGP_C3HHeJ_G0010367.1 mouse_genomes_project 1 194981331 194981472 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020539.1 MGP_C3HHeJ_G0015962.1 mouse_genomes_project 1 75815623 75831825 + MGP_C3HHeJ_P0020539 Stk11ip protein_coding unknown_likely_coding MGP_C3HHeJ_T0020540.1 MGP_C3HHeJ_G0015962.1 mouse_genomes_project 1 75815915 75831819 + Stk11ip protein_coding retained_intron MGP_C3HHeJ_T0020541.1 MGP_C3HHeJ_G0015962.1 mouse_genomes_project 1 75815935 75821832 + Stk11ip protein_coding retained_intron MGP_C3HHeJ_T0020542.1 MGP_C3HHeJ_G0015962.1 mouse_genomes_project 1 75823024 75824209 + Stk11ip protein_coding retained_intron MGP_C3HHeJ_T0020543.1 MGP_C3HHeJ_G0015962.1 mouse_genomes_project 1 75823359 75831819 + Stk11ip protein_coding retained_intron MGP_C3HHeJ_T0020544.1 MGP_C3HHeJ_G0015962.1 mouse_genomes_project 1 75824399 75827068 + Stk11ip protein_coding retained_intron MGP_C3HHeJ_T0020545.1 MGP_C3HHeJ_G0015962.1 mouse_genomes_project 1 75827261 75828988 + Stk11ip protein_coding retained_intron MGP_C3HHeJ_T0020546.1 MGP_C3HHeJ_G0015962.1 mouse_genomes_project 1 75827768 75828515 + Stk11ip protein_coding processed_transcript MGP_C3HHeJ_T0019438.1 MGP_C3HHeJ_G0015765.1 mouse_genomes_project 1 44523726 44552185 + MGP_C3HHeJ_P0019438 Wdr75 protein_coding protein_coding MGP_C3HHeJ_T0019439.1 MGP_C3HHeJ_G0015765.1 mouse_genomes_project 1 44524009 44552170 + Wdr75 protein_coding retained_intron MGP_C3HHeJ_T0019440.1 MGP_C3HHeJ_G0015765.1 mouse_genomes_project 1 44524063 44530886 + Wdr75 protein_coding retained_intron MGP_C3HHeJ_T0019441.1 MGP_C3HHeJ_G0015765.1 mouse_genomes_project 1 44524067 44532459 + MGP_C3HHeJ_P0019441 Wdr75 protein_coding protein_coding MGP_C3HHeJ_T0019442.1 MGP_C3HHeJ_G0015765.1 mouse_genomes_project 1 44530519 44552081 + Wdr75 protein_coding processed_transcript MGP_C3HHeJ_T0019443.1 MGP_C3HHeJ_G0015765.1 mouse_genomes_project 1 44532216 44533986 + Wdr75 protein_coding processed_transcript MGP_C3HHeJ_T0019444.1 MGP_C3HHeJ_G0015765.1 mouse_genomes_project 1 44543246 44552185 + Wdr75 protein_coding retained_intron MGP_C3HHeJ_T0019445.1 MGP_C3HHeJ_G0015765.1 mouse_genomes_project 1 44550834 44552079 + Wdr75 protein_coding retained_intron MGP_C3HHeJ_T0019446.1 MGP_C3HHeJ_G0015765.1 mouse_genomes_project 1 44551126 44552182 + MGP_C3HHeJ_P0019446 Wdr75 protein_coding protein_coding MGP_C3HHeJ_T0019359.1 MGP_C3HHeJ_G0015750.1 mouse_genomes_project 1 41746327 41786985 - MGP_C3HHeJ_P0019359 Fhl2 protein_coding protein_coding MGP_C3HHeJ_T0012005.1 MGP_C3HHeJ_G0010109.1 mouse_genomes_project 1 72232731 72233614 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023429.1 MGP_C3HHeJ_G0016587.1 mouse_genomes_project 1 178717187 178718134 + MGP_C3HHeJ_P0023429 Olfr424 protein_coding protein_coding MGP_C3HHeJ_T0023866.1 MGP_C3HHeJ_G0016684.1 mouse_genomes_project 1 192426997 192447208 + Gpatch2 protein_coding processed_transcript MGP_C3HHeJ_T0023867.1 MGP_C3HHeJ_G0016684.1 mouse_genomes_project 1 192427000 192569374 + MGP_C3HHeJ_P0023867 Gpatch2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023868.1 MGP_C3HHeJ_G0016684.1 mouse_genomes_project 1 192427011 192572186 + MGP_C3HHeJ_P0023868 Gpatch2 protein_coding protein_coding MGP_C3HHeJ_T0023869.1 MGP_C3HHeJ_G0016684.1 mouse_genomes_project 1 192427027 192522431 + Gpatch2 protein_coding retained_intron MGP_C3HHeJ_T0023870.1 MGP_C3HHeJ_G0016684.1 mouse_genomes_project 1 192427033 192445794 + MGP_C3HHeJ_P0023870 Gpatch2 protein_coding protein_coding MGP_C3HHeJ_T0023871.1 MGP_C3HHeJ_G0016684.1 mouse_genomes_project 1 192427035 192445278 + MGP_C3HHeJ_P0023871 Gpatch2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023872.1 MGP_C3HHeJ_G0016684.1 mouse_genomes_project 1 192427113 192568311 + MGP_C3HHeJ_P0023872 Gpatch2 protein_coding protein_coding MGP_C3HHeJ_T0023873.1 MGP_C3HHeJ_G0016684.1 mouse_genomes_project 1 192427232 192570457 + MGP_C3HHeJ_P0023873 Gpatch2 protein_coding protein_coding MGP_C3HHeJ_T0011774.1 MGP_C3HHeJ_G0009878.1 mouse_genomes_project 1 4753170 4753456 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020789.1 MGP_C3HHeJ_G0016011.1 mouse_genomes_project 1 87009855 87011731 + B3gnt7 protein_coding retained_intron MGP_C3HHeJ_T0020790.1 MGP_C3HHeJ_G0016011.1 mouse_genomes_project 1 87010257 87014328 + MGP_C3HHeJ_P0020790 B3gnt7 protein_coding protein_coding MGP_C3HHeJ_T0020791.1 MGP_C3HHeJ_G0016011.1 mouse_genomes_project 1 87010554 87012872 + MGP_C3HHeJ_P0020791 B3gnt7 protein_coding protein_coding MGP_C3HHeJ_T0005824.1 MGP_C3HHeJ_G0004874.1 mouse_genomes_project 1 132580182 132592604 - Gm16081 lincRNA lincRNA MGP_C3HHeJ_T0098646.1 MGP_C3HHeJ_G0036840.1 mouse_genomes_project 1 126691625 126691729 + Gm25578 snRNA snRNA MGP_C3HHeJ_T0005787.1 MGP_C3HHeJ_G0004846.1 mouse_genomes_project 1 107821640 107840589 - Gm20753 lincRNA lincRNA MGP_C3HHeJ_T0022990.1 MGP_C3HHeJ_G0016469.1 mouse_genomes_project 1 169975534 170036847 + MGP_C3HHeJ_P0022990 Ildr2 protein_coding protein_coding MGP_C3HHeJ_T0022991.1 MGP_C3HHeJ_G0016469.1 mouse_genomes_project 1 169975588 170031294 + MGP_C3HHeJ_P0022991 Ildr2 protein_coding protein_coding MGP_C3HHeJ_T0022992.1 MGP_C3HHeJ_G0016469.1 mouse_genomes_project 1 169975588 170031294 + MGP_C3HHeJ_P0022992 Ildr2 protein_coding protein_coding MGP_C3HHeJ_T0022993.1 MGP_C3HHeJ_G0016469.1 mouse_genomes_project 1 169975588 170031294 + MGP_C3HHeJ_P0022993 Ildr2 protein_coding protein_coding MGP_C3HHeJ_T0022994.1 MGP_C3HHeJ_G0016469.1 mouse_genomes_project 1 169975588 170031294 + MGP_C3HHeJ_P0022994 Ildr2 protein_coding protein_coding MGP_C3HHeJ_T0022995.1 MGP_C3HHeJ_G0016469.1 mouse_genomes_project 1 169975588 170031294 + MGP_C3HHeJ_P0022995 Ildr2 protein_coding protein_coding MGP_C3HHeJ_T0022996.1 MGP_C3HHeJ_G0016469.1 mouse_genomes_project 1 169975588 170031294 + MGP_C3HHeJ_P0022996 Ildr2 protein_coding protein_coding MGP_C3HHeJ_T0005856.1 MGP_C3HHeJ_G0004901.1 mouse_genomes_project 1 142119917 142142463 + 4933436E23Rik lincRNA lincRNA MGP_C3HHeJ_T0000656.1 MGP_C3HHeJ_G0000601.1 mouse_genomes_project 1 156976764 156978680 + TEC TEC MGP_C3HHeJ_T0023165.1 MGP_C3HHeJ_G0016514.1 mouse_genomes_project 1 175164164 175175299 + MGP_C3HHeJ_P0023165 Adamts4 protein_coding protein_coding MGP_C3HHeJ_T0023166.1 MGP_C3HHeJ_G0016514.1 mouse_genomes_project 1 175165852 175175299 + MGP_C3HHeJ_P0023166 Adamts4 protein_coding protein_coding MGP_C3HHeJ_T0021474.1 MGP_C3HHeJ_G0016166.1 mouse_genomes_project 1 121568878 121673864 - MGP_C3HHeJ_P0021474 Epb41l5 protein_coding protein_coding MGP_C3HHeJ_T0021475.1 MGP_C3HHeJ_G0016166.1 mouse_genomes_project 1 121571972 121673862 - MGP_C3HHeJ_P0021475 Epb41l5 protein_coding protein_coding MGP_C3HHeJ_T0021476.1 MGP_C3HHeJ_G0016166.1 mouse_genomes_project 1 121578076 121624547 - Epb41l5 protein_coding retained_intron MGP_C3HHeJ_T0021477.1 MGP_C3HHeJ_G0016166.1 mouse_genomes_project 1 121602379 121604667 - Epb41l5 protein_coding retained_intron MGP_C3HHeJ_T0021478.1 MGP_C3HHeJ_G0016166.1 mouse_genomes_project 1 121614983 121673928 - MGP_C3HHeJ_P0021478 Epb41l5 protein_coding protein_coding MGP_C3HHeJ_T0021479.1 MGP_C3HHeJ_G0016166.1 mouse_genomes_project 1 121619315 121673545 - MGP_C3HHeJ_P0021479 Epb41l5 protein_coding protein_coding MGP_C3HHeJ_T0021480.1 MGP_C3HHeJ_G0016166.1 mouse_genomes_project 1 121619683 121623482 - Epb41l5 protein_coding retained_intron MGP_C3HHeJ_T0021481.1 MGP_C3HHeJ_G0016166.1 mouse_genomes_project 1 121641806 121658520 - Epb41l5 protein_coding retained_intron MGP_C3HHeJ_T0021482.1 MGP_C3HHeJ_G0016166.1 mouse_genomes_project 1 121646100 121673552 - MGP_C3HHeJ_P0021482 Epb41l5 protein_coding protein_coding MGP_C3HHeJ_T0011891.1 MGP_C3HHeJ_G0009995.1 mouse_genomes_project 1 40679756 40681718 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005913.1 MGP_C3HHeJ_G0004946.1 mouse_genomes_project 1 171035800 171036499 + Gm2453 lincRNA lincRNA MGP_C3HHeJ_T0005914.1 MGP_C3HHeJ_G0004946.1 mouse_genomes_project 1 171036216 171040589 + Gm2453 lincRNA lincRNA MGP_C3HHeJ_T0000441.1 MGP_C3HHeJ_G0000388.1 mouse_genomes_project 1 53972150 53973811 - TEC TEC MGP_C3HHeJ_T0020585.1 MGP_C3HHeJ_G0015970.1 mouse_genomes_project 1 79069809 79084630 + MGP_C3HHeJ_P0020585 Utp14b protein_coding protein_coding MGP_C3HHeJ_T0020586.1 MGP_C3HHeJ_G0015970.1 mouse_genomes_project 1 79070211 79079339 + MGP_C3HHeJ_P0020586 Utp14b protein_coding protein_coding MGP_C3HHeJ_T0021234.1 MGP_C3HHeJ_G0016111.1 mouse_genomes_project 1 94807976 94824792 - MGP_C3HHeJ_P0021234 Stk25 protein_coding protein_coding MGP_C3HHeJ_T0021235.1 MGP_C3HHeJ_G0016111.1 mouse_genomes_project 1 94810127 94824699 - Stk25 protein_coding retained_intron MGP_C3HHeJ_T0021236.1 MGP_C3HHeJ_G0016111.1 mouse_genomes_project 1 94810584 94813587 - Stk25 protein_coding retained_intron MGP_C3HHeJ_T0021237.1 MGP_C3HHeJ_G0016111.1 mouse_genomes_project 1 94811621 94814014 - Stk25 protein_coding retained_intron MGP_C3HHeJ_T0021238.1 MGP_C3HHeJ_G0016111.1 mouse_genomes_project 1 94814075 94824549 - MGP_C3HHeJ_P0021238 Stk25 protein_coding protein_coding MGP_C3HHeJ_T0021239.1 MGP_C3HHeJ_G0016111.1 mouse_genomes_project 1 94815356 94849779 - MGP_C3HHeJ_P0021239 Stk25 protein_coding protein_coding MGP_C3HHeJ_T0000734.1 MGP_C3HHeJ_G0000678.1 mouse_genomes_project 1 185324723 185332879 + TEC TEC MGP_C3HHeJ_T0022905.1 MGP_C3HHeJ_G0016454.1 mouse_genomes_project 1 168823133 168848912 - MGP_C3HHeJ_P0022905 Tbx19 protein_coding protein_coding MGP_C3HHeJ_T0022906.1 MGP_C3HHeJ_G0016454.1 mouse_genomes_project 1 168824167 168835019 - Tbx19 protein_coding processed_transcript MGP_C3HHeJ_T0022907.1 MGP_C3HHeJ_G0016454.1 mouse_genomes_project 1 168824225 168839126 - MGP_C3HHeJ_P0022907 Tbx19 protein_coding protein_coding MGP_C3HHeJ_T0022908.1 MGP_C3HHeJ_G0016454.1 mouse_genomes_project 1 168827737 168834704 - Tbx19 protein_coding processed_transcript MGP_C3HHeJ_T0020091.1 MGP_C3HHeJ_G0015883.1 mouse_genomes_project 1 66688984 66707881 + MGP_C3HHeJ_P0020091 Rpe protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020092.1 MGP_C3HHeJ_G0015883.1 mouse_genomes_project 1 66688984 66703592 + MGP_C3HHeJ_P0020092 Rpe protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020093.1 MGP_C3HHeJ_G0015883.1 mouse_genomes_project 1 66688984 66707881 + MGP_C3HHeJ_P0020093 Rpe protein_coding protein_coding MGP_C3HHeJ_T0020094.1 MGP_C3HHeJ_G0015883.1 mouse_genomes_project 1 66688984 66707881 + MGP_C3HHeJ_P0020094 Rpe protein_coding protein_coding MGP_C3HHeJ_T0020095.1 MGP_C3HHeJ_G0015883.1 mouse_genomes_project 1 66689060 66706160 + MGP_C3HHeJ_P0020095 Rpe protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002894.1 MGP_C3HHeJ_G0002721.1 mouse_genomes_project 1 181555924 181560634 - Gm15423 antisense antisense MGP_C3HHeJ_T0011961.1 MGP_C3HHeJ_G0010065.1 mouse_genomes_project 1 60090636 60090863 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011903.1 MGP_C3HHeJ_G0010007.1 mouse_genomes_project 1 43624639 43625384 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012119.1 MGP_C3HHeJ_G0010223.1 mouse_genomes_project 1 123567265 123567484 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005852.1 MGP_C3HHeJ_G0004898.1 mouse_genomes_project 1 140906833 140909503 - Gm28556 lincRNA lincRNA MGP_C3HHeJ_T0005721.1 MGP_C3HHeJ_G0004790.1 mouse_genomes_project 1 76805297 76818742 + Gm17751 lincRNA lincRNA MGP_C3HHeJ_T0005722.1 MGP_C3HHeJ_G0004790.1 mouse_genomes_project 1 76805297 76819324 + Gm17751 lincRNA lincRNA MGP_C3HHeJ_T0000507.1 MGP_C3HHeJ_G0000454.1 mouse_genomes_project 1 83343114 83344160 - TEC TEC MGP_C3HHeJ_T0022215.1 MGP_C3HHeJ_G0016323.1 mouse_genomes_project 1 142242496 142269098 + MGP_C3HHeJ_P0022215 F13b protein_coding protein_coding MGP_C3HHeJ_T0022216.1 MGP_C3HHeJ_G0016323.1 mouse_genomes_project 1 142261737 142263247 + F13b protein_coding processed_transcript MGP_C3HHeJ_T0018842.1 MGP_C3HHeJ_G0015648.1 mouse_genomes_project 1 18726383 18751993 + MGP_C3HHeJ_P0018842 Gsta3 protein_coding protein_coding MGP_C3HHeJ_T0018843.1 MGP_C3HHeJ_G0015648.1 mouse_genomes_project 1 18726401 18751353 + MGP_C3HHeJ_P0018843 Gsta3 protein_coding protein_coding MGP_C3HHeJ_T0018844.1 MGP_C3HHeJ_G0015648.1 mouse_genomes_project 1 18726423 18751178 + MGP_C3HHeJ_P0018844 Gsta3 protein_coding protein_coding MGP_C3HHeJ_T0018845.1 MGP_C3HHeJ_G0015648.1 mouse_genomes_project 1 18736099 18751294 + MGP_C3HHeJ_P0018845 Gsta3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0018846.1 MGP_C3HHeJ_G0015648.1 mouse_genomes_project 1 18739848 18742640 + Gsta3 protein_coding retained_intron MGP_C3HHeJ_T0012144.1 MGP_C3HHeJ_G0010248.1 mouse_genomes_project 1 138469906 138470275 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020007.1 MGP_C3HHeJ_G0015866.1 mouse_genomes_project 1 64528283 64539078 - MGP_C3HHeJ_P0020007 Mettl21a protein_coding protein_coding MGP_C3HHeJ_T0020008.1 MGP_C3HHeJ_G0015866.1 mouse_genomes_project 1 64528290 64539004 - MGP_C3HHeJ_P0020008 Mettl21a protein_coding protein_coding MGP_C3HHeJ_T0020009.1 MGP_C3HHeJ_G0015866.1 mouse_genomes_project 1 64529766 64537467 - Mettl21a protein_coding processed_transcript MGP_C3HHeJ_T0020010.1 MGP_C3HHeJ_G0015866.1 mouse_genomes_project 1 64536037 64539020 - Mettl21a protein_coding processed_transcript MGP_C3HHeJ_T0005847.1 MGP_C3HHeJ_G0004894.1 mouse_genomes_project 1 139343611 139378546 + Platr22 lincRNA lincRNA MGP_C3HHeJ_T0002907.1 MGP_C3HHeJ_G0002731.1 mouse_genomes_project 1 190064437 190084305 + Gm38251 antisense antisense MGP_C3HHeJ_T0009473.1 MGP_C3HHeJ_G0007606.1 mouse_genomes_project 1 190399237 190399306 + Mir664 miRNA miRNA MGP_C3HHeJ_T0005975.1 MGP_C3HHeJ_G0004993.1 mouse_genomes_project 1 195752548 195767877 + Gm29678 lincRNA lincRNA MGP_C3HHeJ_T0023167.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175184430 175190962 + MGP_C3HHeJ_P0023167 B4galt3 protein_coding protein_coding MGP_C3HHeJ_T0023168.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175184441 175188381 + MGP_C3HHeJ_P0023168 B4galt3 protein_coding protein_coding MGP_C3HHeJ_T0023169.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175184445 175190963 + MGP_C3HHeJ_P0023169 B4galt3 protein_coding protein_coding MGP_C3HHeJ_T0023170.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175184445 175186032 + MGP_C3HHeJ_P0023170 B4galt3 protein_coding protein_coding MGP_C3HHeJ_T0023171.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175184456 175186133 + B4galt3 protein_coding retained_intron MGP_C3HHeJ_T0023172.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175184467 175190962 + MGP_C3HHeJ_P0023172 B4galt3 protein_coding protein_coding MGP_C3HHeJ_T0023173.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175184476 175190963 + B4galt3 protein_coding retained_intron MGP_C3HHeJ_T0023174.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175184510 175185462 + B4galt3 protein_coding processed_transcript MGP_C3HHeJ_T0023175.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175184920 175185735 + B4galt3 protein_coding retained_intron MGP_C3HHeJ_T0023176.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175185732 175186697 + MGP_C3HHeJ_P0023176 B4galt3 protein_coding protein_coding MGP_C3HHeJ_T0023177.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175187608 175190961 + B4galt3 protein_coding retained_intron MGP_C3HHeJ_T0000512.1 MGP_C3HHeJ_G0000459.1 mouse_genomes_project 1 84996345 84999242 - TEC TEC MGP_C3HHeJ_T0011758.1 MGP_C3HHeJ_G0009862.1 mouse_genomes_project 1 2006454 2006726 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023034.1 MGP_C3HHeJ_G0016482.1 mouse_genomes_project 1 171467022 171624734 + MGP_C3HHeJ_P0023034 Lmx1a protein_coding protein_coding MGP_C3HHeJ_T0023035.1 MGP_C3HHeJ_G0016482.1 mouse_genomes_project 1 171467342 171624734 + MGP_C3HHeJ_P0023035 Lmx1a protein_coding protein_coding MGP_C3HHeJ_T0012188.1 MGP_C3HHeJ_G0010292.1 mouse_genomes_project 1 156159984 156160687 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099828.1 MGP_C3HHeJ_G0038022.1 mouse_genomes_project 1 16437835 16437907 - Gm24075 snoRNA snoRNA MGP_C3HHeJ_T0011998.1 MGP_C3HHeJ_G0010102.1 mouse_genomes_project 1 68378396 68378843 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012135.1 MGP_C3HHeJ_G0010239.1 mouse_genomes_project 1 130746493 130747093 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005788.1 MGP_C3HHeJ_G0004847.1 mouse_genomes_project 1 108072632 108074453 - A530053M12Rik lincRNA lincRNA MGP_C3HHeJ_T0012142.1 MGP_C3HHeJ_G0010246.1 mouse_genomes_project 1 136009878 136010670 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011870.1 MGP_C3HHeJ_G0009974.1 mouse_genomes_project 1 32722550 32722842 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020484.1 MGP_C3HHeJ_G0015954.1 mouse_genomes_project 1 75649217 75657459 + MGP_C3HHeJ_P0020484 Des protein_coding protein_coding MGP_C3HHeJ_T0020485.1 MGP_C3HHeJ_G0015954.1 mouse_genomes_project 1 75650405 75651283 + Des protein_coding retained_intron MGP_C3HHeJ_T0020486.1 MGP_C3HHeJ_G0015954.1 mouse_genomes_project 1 75650909 75652518 + Des protein_coding retained_intron MGP_C3HHeJ_T0012227.1 MGP_C3HHeJ_G0010331.1 mouse_genomes_project 1 173387057 173388213 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020300.1 MGP_C3HHeJ_G0015925.1 mouse_genomes_project 1 74915463 74919299 + MGP_C3HHeJ_P0020300 Bcs1l protein_coding protein_coding MGP_C3HHeJ_T0020301.1 MGP_C3HHeJ_G0015925.1 mouse_genomes_project 1 74915474 74919625 + MGP_C3HHeJ_P0020301 Bcs1l protein_coding protein_coding MGP_C3HHeJ_T0020302.1 MGP_C3HHeJ_G0015925.1 mouse_genomes_project 1 74915548 74919364 + MGP_C3HHeJ_P0020302 Bcs1l protein_coding protein_coding MGP_C3HHeJ_T0020303.1 MGP_C3HHeJ_G0015925.1 mouse_genomes_project 1 74917440 74918083 + Bcs1l protein_coding retained_intron MGP_C3HHeJ_T0000409.1 MGP_C3HHeJ_G0000356.1 mouse_genomes_project 1 32206257 32207872 + TEC TEC MGP_C3HHeJ_T0022912.1 MGP_C3HHeJ_G0016456.1 mouse_genomes_project 1 168905045 168931113 - MGP_C3HHeJ_P0022912 Tiprl protein_coding protein_coding MGP_C3HHeJ_T0022913.1 MGP_C3HHeJ_G0016456.1 mouse_genomes_project 1 168907676 168921167 - MGP_C3HHeJ_P0022913 Tiprl protein_coding protein_coding MGP_C3HHeJ_T0022914.1 MGP_C3HHeJ_G0016456.1 mouse_genomes_project 1 168908341 168909287 - Tiprl protein_coding retained_intron MGP_C3HHeJ_T0022915.1 MGP_C3HHeJ_G0016456.1 mouse_genomes_project 1 168908485 168931166 - MGP_C3HHeJ_P0022915 Tiprl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022916.1 MGP_C3HHeJ_G0016456.1 mouse_genomes_project 1 168915196 168931092 - Tiprl protein_coding processed_transcript MGP_C3HHeJ_T0022917.1 MGP_C3HHeJ_G0016456.1 mouse_genomes_project 1 168921102 168931102 - Tiprl protein_coding processed_transcript MGP_C3HHeJ_T0011953.1 MGP_C3HHeJ_G0010057.1 mouse_genomes_project 1 58271524 58278707 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005880.1 MGP_C3HHeJ_G0004920.1 mouse_genomes_project 1 160317067 160407164 - Gm28694 lincRNA lincRNA MGP_C3HHeJ_T0000321.1 MGP_C3HHeJ_G0000271.1 mouse_genomes_project 1 401735 404553 - TEC TEC MGP_C3HHeJ_T0009469.1 MGP_C3HHeJ_G0007602.1 mouse_genomes_project 1 181515348 181515428 + Gm25993 miRNA miRNA MGP_C3HHeJ_T0011802.1 MGP_C3HHeJ_G0009906.1 mouse_genomes_project 1 11026169 11029189 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011845.1 MGP_C3HHeJ_G0009949.1 mouse_genomes_project 1 26673522 26676007 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019345.1 MGP_C3HHeJ_G0015747.1 mouse_genomes_project 1 41567350 41569634 + Gpr45 protein_coding processed_transcript MGP_C3HHeJ_T0019346.1 MGP_C3HHeJ_G0015747.1 mouse_genomes_project 1 41567441 41654541 + MGP_C3HHeJ_P0019346 Gpr45 protein_coding protein_coding MGP_C3HHeJ_T0019347.1 MGP_C3HHeJ_G0015747.1 mouse_genomes_project 1 41567617 41649163 + Gpr45 protein_coding processed_transcript MGP_C3HHeJ_T0019348.1 MGP_C3HHeJ_G0015747.1 mouse_genomes_project 1 41567660 41568357 + Gpr45 protein_coding processed_transcript MGP_C3HHeJ_T0019349.1 MGP_C3HHeJ_G0015747.1 mouse_genomes_project 1 41651144 41652690 + MGP_C3HHeJ_P0019349 Gpr45 protein_coding protein_coding MGP_C3HHeJ_T0012111.1 MGP_C3HHeJ_G0010215.1 mouse_genomes_project 1 121253251 121254053 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011696.1 MGP_C3HHeJ_G0009827.1 mouse_genomes_project 1 178731961 178733011 + MGP_C3HHeJ_P0011696 Olfr421-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0002854.1 MGP_C3HHeJ_G0002689.1 mouse_genomes_project 1 160283930 160284289 + 4930439D14Rik antisense antisense MGP_C3HHeJ_T0022281.1 MGP_C3HHeJ_G0016338.1 mouse_genomes_project 1 149473465 149930617 + MGP_C3HHeJ_P0022281 Brinp3 protein_coding protein_coding MGP_C3HHeJ_T0022282.1 MGP_C3HHeJ_G0016338.1 mouse_genomes_project 1 149476319 149768239 + MGP_C3HHeJ_P0022282 Brinp3 protein_coding protein_coding MGP_C3HHeJ_T0022283.1 MGP_C3HHeJ_G0016338.1 mouse_genomes_project 1 149476392 149930618 + MGP_C3HHeJ_P0022283 Brinp3 protein_coding protein_coding MGP_C3HHeJ_T0022284.1 MGP_C3HHeJ_G0016338.1 mouse_genomes_project 1 149476409 149930612 + MGP_C3HHeJ_P0022284 Brinp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022285.1 MGP_C3HHeJ_G0016338.1 mouse_genomes_project 1 149476443 149497255 + Brinp3 protein_coding retained_intron MGP_C3HHeJ_T0018896.1 MGP_C3HHeJ_G0015661.1 mouse_genomes_project 1 21891939 22097422 - Col19a1 protein_coding processed_transcript MGP_C3HHeJ_T0018897.1 MGP_C3HHeJ_G0015661.1 mouse_genomes_project 1 21894037 22229845 - MGP_C3HHeJ_P0018897 Col19a1 protein_coding protein_coding MGP_C3HHeJ_T0018898.1 MGP_C3HHeJ_G0015661.1 mouse_genomes_project 1 21911551 22229784 - MGP_C3HHeJ_P0018898 Col19a1 protein_coding protein_coding MGP_C3HHeJ_T0098610.1 MGP_C3HHeJ_G0036804.1 mouse_genomes_project 1 32153813 32153906 - Gm23792 snRNA snRNA MGP_C3HHeJ_T0000550.1 MGP_C3HHeJ_G0000497.1 mouse_genomes_project 1 107358937 107363291 + TEC TEC MGP_C3HHeJ_T0012024.1 MGP_C3HHeJ_G0010128.1 mouse_genomes_project 1 83359675 83360066 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012085.1 MGP_C3HHeJ_G0010189.1 mouse_genomes_project 1 110411445 110411623 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000336.1 MGP_C3HHeJ_G0000286.1 mouse_genomes_project 1 5585158 5588660 - TEC TEC MGP_C3HHeJ_T0012161.1 MGP_C3HHeJ_G0010265.1 mouse_genomes_project 1 145655963 145656258 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005962.1 MGP_C3HHeJ_G0004982.1 mouse_genomes_project 1 190236722 190241960 + 4930433J02Rik lincRNA lincRNA MGP_C3HHeJ_T0022263.1 MGP_C3HHeJ_G0016333.1 mouse_genomes_project 1 146926601 146931397 - MGP_C3HHeJ_P0022263 Rgs2 protein_coding protein_coding MGP_C3HHeJ_T0022264.1 MGP_C3HHeJ_G0016333.1 mouse_genomes_project 1 146928943 146931371 - MGP_C3HHeJ_P0022264 Rgs2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022265.1 MGP_C3HHeJ_G0016333.1 mouse_genomes_project 1 146929146 146931268 - MGP_C3HHeJ_P0022265 Rgs2 protein_coding protein_coding MGP_C3HHeJ_T0022266.1 MGP_C3HHeJ_G0016333.1 mouse_genomes_project 1 146929779 146931357 - Rgs2 protein_coding retained_intron MGP_C3HHeJ_T0023385.1 MGP_C3HHeJ_G0016565.1 mouse_genomes_project 1 177533467 177534409 + MGP_C3HHeJ_P0023385 Olfr218 protein_coding protein_coding MGP_C3HHeJ_T0023008.1 MGP_C3HHeJ_G0016473.1 mouse_genomes_project 1 170355441 170374917 - MGP_C3HHeJ_P0023008 Gm4847 protein_coding protein_coding MGP_C3HHeJ_T0000466.1 MGP_C3HHeJ_G0000413.1 mouse_genomes_project 1 62649063 62651611 + TEC TEC MGP_C3HHeJ_T0005816.1 MGP_C3HHeJ_G0004867.1 mouse_genomes_project 1 123271939 123275202 + Gm29359 lincRNA lincRNA MGP_C3HHeJ_T0005603.1 MGP_C3HHeJ_G0004708.1 mouse_genomes_project 1 33863747 33891379 - Gm37068 lincRNA lincRNA MGP_C3HHeJ_T0000552.1 MGP_C3HHeJ_G0000499.1 mouse_genomes_project 1 107738385 107741696 - TEC TEC MGP_C3HHeJ_T0012012.1 MGP_C3HHeJ_G0010116.1 mouse_genomes_project 1 75940981 75941788 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101079.1 MGP_C3HHeJ_G0039273.1 mouse_genomes_project 1 32603823 32604652 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0011162.1 MGP_C3HHeJ_G0009295.1 mouse_genomes_project 1 144197764 144197878 + Gm22016 misc_RNA misc_RNA MGP_C3HHeJ_T0023996.1 MGP_C3HHeJ_G0016708.1 mouse_genomes_project 1 197133854 197206754 + MGP_C3HHeJ_P0023996 Lpgat1 protein_coding protein_coding MGP_C3HHeJ_T0023997.1 MGP_C3HHeJ_G0016708.1 mouse_genomes_project 1 197133854 197135418 + MGP_C3HHeJ_P0023997 Lpgat1 protein_coding protein_coding MGP_C3HHeJ_T0023998.1 MGP_C3HHeJ_G0016708.1 mouse_genomes_project 1 197134047 197135806 + Lpgat1 protein_coding retained_intron MGP_C3HHeJ_T0023999.1 MGP_C3HHeJ_G0016708.1 mouse_genomes_project 1 197134409 197202476 + MGP_C3HHeJ_P0023999 Lpgat1 protein_coding protein_coding MGP_C3HHeJ_T0024000.1 MGP_C3HHeJ_G0016708.1 mouse_genomes_project 1 197134541 197182867 + MGP_C3HHeJ_P0024000 Lpgat1 protein_coding protein_coding MGP_C3HHeJ_T0018671.1 MGP_C3HHeJ_G0015608.1 mouse_genomes_project 1 8131111 8447977 + MGP_C3HHeJ_P0018671 Prex2 protein_coding protein_coding MGP_C3HHeJ_T0018672.1 MGP_C3HHeJ_G0015608.1 mouse_genomes_project 1 8131164 8134229 + Prex2 protein_coding retained_intron MGP_C3HHeJ_T0018673.1 MGP_C3HHeJ_G0015608.1 mouse_genomes_project 1 8234079 8286543 + Prex2 protein_coding retained_intron MGP_C3HHeJ_T0018674.1 MGP_C3HHeJ_G0015608.1 mouse_genomes_project 1 8276983 8297048 + Prex2 protein_coding retained_intron MGP_C3HHeJ_T0018677.1 MGP_C3HHeJ_G0015608.1 mouse_genomes_project 1 8400864 8442228 + MGP_C3HHeJ_P0018677 Prex2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018678.1 MGP_C3HHeJ_G0015608.1 mouse_genomes_project 1 8422119 8442427 + MGP_C3HHeJ_P0018678 Prex2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020831.1 MGP_C3HHeJ_G0016024.1 mouse_genomes_project 1 87987522 87992615 + MGP_C3HHeJ_P0020831 Prss56 protein_coding protein_coding MGP_C3HHeJ_T0005949.1 MGP_C3HHeJ_G0004975.1 mouse_genomes_project 1 189002999 189003825 + Gm38108 lincRNA lincRNA MGP_C3HHeJ_T0002741.1 MGP_C3HHeJ_G0002605.1 mouse_genomes_project 1 54726929 54735673 + Gm10561 antisense antisense MGP_C3HHeJ_T0005627.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41190488 41298472 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005628.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41250081 41296756 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005629.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41250087 41269387 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005630.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41250088 41298489 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005631.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41250088 41253564 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005632.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41250088 41298489 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005633.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41250088 41296781 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005634.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41250089 41270068 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005635.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41250089 41296721 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005636.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41250266 41269308 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005637.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41269247 41298506 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005638.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41296654 41298489 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0021980.1 MGP_C3HHeJ_G0016277.1 mouse_genomes_project 1 136980248 136991083 + Klhl12 protein_coding retained_intron MGP_C3HHeJ_T0021981.1 MGP_C3HHeJ_G0016277.1 mouse_genomes_project 1 136980248 137016023 + MGP_C3HHeJ_P0021981 Klhl12 protein_coding protein_coding MGP_C3HHeJ_T0021982.1 MGP_C3HHeJ_G0016277.1 mouse_genomes_project 1 136980248 137016168 + MGP_C3HHeJ_P0021982 Klhl12 protein_coding protein_coding MGP_C3HHeJ_T0021983.1 MGP_C3HHeJ_G0016277.1 mouse_genomes_project 1 136980272 137016023 + MGP_C3HHeJ_P0021983 Klhl12 protein_coding protein_coding MGP_C3HHeJ_T0021984.1 MGP_C3HHeJ_G0016277.1 mouse_genomes_project 1 136993144 136998227 + Klhl12 protein_coding retained_intron MGP_C3HHeJ_T0021985.1 MGP_C3HHeJ_G0016277.1 mouse_genomes_project 1 136999642 137011086 + Klhl12 protein_coding retained_intron MGP_C3HHeJ_T0023446.1 MGP_C3HHeJ_G0016596.1 mouse_genomes_project 1 179425297 179514909 - MGP_C3HHeJ_P0023446 Grem2 protein_coding protein_coding MGP_C3HHeJ_T0009431.1 MGP_C3HHeJ_G0007564.1 mouse_genomes_project 1 94445063 94445125 + Mir6901 miRNA miRNA MGP_C3HHeJ_T0019039.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34394992 34499727 - MGP_C3HHeJ_P0019039 Uggt1 protein_coding protein_coding MGP_C3HHeJ_T0019040.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34398469 34420882 - Uggt1 protein_coding retained_intron MGP_C3HHeJ_T0019041.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34398473 34499583 - MGP_C3HHeJ_P0019041 Uggt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019042.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34401126 34405533 - Uggt1 protein_coding retained_intron MGP_C3HHeJ_T0019043.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34416799 34428416 - MGP_C3HHeJ_P0019043 Uggt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019044.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34417278 34437539 - MGP_C3HHeJ_P0019044 Uggt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019045.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34418424 34420012 - Uggt1 protein_coding retained_intron MGP_C3HHeJ_T0019046.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34433577 34499529 - Uggt1 protein_coding retained_intron MGP_C3HHeJ_T0019047.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34440794 34465773 - MGP_C3HHeJ_P0019047 Uggt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019048.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34450885 34463946 - Uggt1 protein_coding retained_intron MGP_C3HHeJ_T0019049.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34499060 34500142 - Uggt1 protein_coding retained_intron MGP_C3HHeJ_T0099862.1 MGP_C3HHeJ_G0038056.1 mouse_genomes_project 1 86780795 86780917 + Gm22786 snoRNA snoRNA MGP_C3HHeJ_T0018794.1 MGP_C3HHeJ_G0015631.1 mouse_genomes_project 1 14354826 14398344 - MGP_C3HHeJ_P0018794 Jph1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018795.1 MGP_C3HHeJ_G0015631.1 mouse_genomes_project 1 14388723 14497676 - MGP_C3HHeJ_P0018795 Jph1 protein_coding protein_coding MGP_C3HHeJ_T0099915.1 MGP_C3HHeJ_G0038109.1 mouse_genomes_project 1 191891093 191891228 + Gm26169 snoRNA snoRNA MGP_C3HHeJ_T0018787.1 MGP_C3HHeJ_G0015629.1 mouse_genomes_project 1 14059017 14075921 + MGP_C3HHeJ_P0018787 Tmem70 protein_coding protein_coding MGP_C3HHeJ_T0018788.1 MGP_C3HHeJ_G0015629.1 mouse_genomes_project 1 14059020 14074940 + Tmem70 protein_coding processed_transcript MGP_C3HHeJ_T0018789.1 MGP_C3HHeJ_G0015629.1 mouse_genomes_project 1 14059020 14076001 + MGP_C3HHeJ_P0018789 Tmem70 protein_coding protein_coding MGP_C3HHeJ_T0018790.1 MGP_C3HHeJ_G0015629.1 mouse_genomes_project 1 14059046 14059622 + Tmem70 protein_coding processed_transcript MGP_C3HHeJ_T0002817.1 MGP_C3HHeJ_G0002660.1 mouse_genomes_project 1 133656792 133657839 + Gm28914 antisense antisense MGP_C3HHeJ_T0000741.1 MGP_C3HHeJ_G0000685.1 mouse_genomes_project 1 187054740 187056965 - TEC TEC MGP_C3HHeJ_T0000432.1 MGP_C3HHeJ_G0000379.1 mouse_genomes_project 1 43271648 43276989 + TEC TEC MGP_C3HHeJ_T0022307.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153523797 153580825 + MGP_C3HHeJ_P0022307 Tpr protein_coding protein_coding MGP_C3HHeJ_T0022308.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153524209 153580945 + MGP_C3HHeJ_P0022308 Tpr protein_coding protein_coding MGP_C3HHeJ_T0022309.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153524343 153526461 + Tpr protein_coding retained_intron MGP_C3HHeJ_T0022310.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153542920 153544890 + Tpr protein_coding retained_intron MGP_C3HHeJ_T0022311.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153545715 153547331 + Tpr protein_coding retained_intron MGP_C3HHeJ_T0022312.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153555671 153559275 + Tpr protein_coding retained_intron MGP_C3HHeJ_T0022313.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153560285 153571314 + MGP_C3HHeJ_P0022313 Tpr protein_coding protein_coding MGP_C3HHeJ_T0022314.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153561319 153571311 + Tpr protein_coding retained_intron MGP_C3HHeJ_T0022315.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153568347 153574225 + Tpr protein_coding retained_intron MGP_C3HHeJ_T0022316.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153569930 153580937 + Tpr protein_coding retained_intron MGP_C3HHeJ_T0022317.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153571195 153580937 + Tpr protein_coding retained_intron MGP_C3HHeJ_T0022318.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153576927 153580937 + MGP_C3HHeJ_P0022318 Tpr protein_coding protein_coding MGP_C3HHeJ_T0022319.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153578464 153580939 + Tpr protein_coding retained_intron MGP_C3HHeJ_T0022320.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153579880 153580801 + Tpr protein_coding processed_transcript MGP_C3HHeJ_T0002755.1 MGP_C3HHeJ_G0002615.1 mouse_genomes_project 1 62300213 62343410 - Pard3bos3 antisense antisense MGP_C3HHeJ_T0018800.1 MGP_C3HHeJ_G0015633.1 mouse_genomes_project 1 15009288 15049026 + MGP_C3HHeJ_P0018800 Pi15 protein_coding protein_coding MGP_C3HHeJ_T0098611.1 MGP_C3HHeJ_G0036805.1 mouse_genomes_project 1 34004608 34004713 + Gm25634 snRNA snRNA MGP_C3HHeJ_T0022298.1 MGP_C3HHeJ_G0016342.1 mouse_genomes_project 1 153483840 153524040 - MGP_C3HHeJ_P0022298 BC003331 protein_coding protein_coding MGP_C3HHeJ_T0022299.1 MGP_C3HHeJ_G0016342.1 mouse_genomes_project 1 153484133 153524015 - MGP_C3HHeJ_P0022299 BC003331 protein_coding protein_coding MGP_C3HHeJ_T0022300.1 MGP_C3HHeJ_G0016342.1 mouse_genomes_project 1 153484133 153523722 - MGP_C3HHeJ_P0022300 BC003331 protein_coding protein_coding MGP_C3HHeJ_T0022301.1 MGP_C3HHeJ_G0016342.1 mouse_genomes_project 1 153485052 153523679 - MGP_C3HHeJ_P0022301 BC003331 protein_coding protein_coding MGP_C3HHeJ_T0022302.1 MGP_C3HHeJ_G0016342.1 mouse_genomes_project 1 153485063 153523703 - MGP_C3HHeJ_P0022302 BC003331 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022303.1 MGP_C3HHeJ_G0016342.1 mouse_genomes_project 1 153505513 153513049 - BC003331 protein_coding retained_intron MGP_C3HHeJ_T0022304.1 MGP_C3HHeJ_G0016342.1 mouse_genomes_project 1 153506241 153523897 - BC003331 protein_coding processed_transcript MGP_C3HHeJ_T0022305.1 MGP_C3HHeJ_G0016342.1 mouse_genomes_project 1 153514855 153523708 - BC003331 protein_coding retained_intron MGP_C3HHeJ_T0022306.1 MGP_C3HHeJ_G0016342.1 mouse_genomes_project 1 153518585 153523707 - BC003331 protein_coding retained_intron MGP_C3HHeJ_T0000518.1 MGP_C3HHeJ_G0000465.1 mouse_genomes_project 1 87386677 87388931 + TEC TEC MGP_C3HHeJ_T0023327.1 MGP_C3HHeJ_G0016548.1 mouse_genomes_project 1 176573570 176600104 - MGP_C3HHeJ_P0023327 Atp1a2 protein_coding protein_coding MGP_C3HHeJ_T0023328.1 MGP_C3HHeJ_G0016548.1 mouse_genomes_project 1 176576358 176600104 - Atp1a2 protein_coding retained_intron MGP_C3HHeJ_T0023329.1 MGP_C3HHeJ_G0016548.1 mouse_genomes_project 1 176577712 176578247 - Atp1a2 protein_coding retained_intron MGP_C3HHeJ_T0023330.1 MGP_C3HHeJ_G0016548.1 mouse_genomes_project 1 176579866 176600104 - MGP_C3HHeJ_P0023330 Atp1a2 protein_coding protein_coding MGP_C3HHeJ_T0023331.1 MGP_C3HHeJ_G0016548.1 mouse_genomes_project 1 176586296 176600104 - Atp1a2 protein_coding retained_intron MGP_C3HHeJ_T0099914.1 MGP_C3HHeJ_G0038108.1 mouse_genomes_project 1 190399169 190399301 + Snora36b snoRNA snoRNA MGP_C3HHeJ_T0022465.1 MGP_C3HHeJ_G0016372.1 mouse_genomes_project 1 157190163 157199991 + MGP_C3HHeJ_P0022465 Glul protein_coding protein_coding MGP_C3HHeJ_T0022466.1 MGP_C3HHeJ_G0016372.1 mouse_genomes_project 1 157190825 157197408 + MGP_C3HHeJ_P0022466 Glul protein_coding protein_coding MGP_C3HHeJ_T0022467.1 MGP_C3HHeJ_G0016372.1 mouse_genomes_project 1 157191335 157196624 + MGP_C3HHeJ_P0022467 Glul protein_coding protein_coding MGP_C3HHeJ_T0022468.1 MGP_C3HHeJ_G0016372.1 mouse_genomes_project 1 157194065 157197297 + Glul protein_coding processed_transcript MGP_C3HHeJ_T0022469.1 MGP_C3HHeJ_G0016372.1 mouse_genomes_project 1 157196310 157197384 + Glul protein_coding retained_intron MGP_C3HHeJ_T0023679.1 MGP_C3HHeJ_G0016643.1 mouse_genomes_project 1 186078461 186088545 + MGP_C3HHeJ_P0023679 9130409I23Rik protein_coding protein_coding MGP_C3HHeJ_T0023436.1 MGP_C3HHeJ_G0016593.1 mouse_genomes_project 1 178999424 179007826 + MGP_C3HHeJ_P0023436 Olfr414 protein_coding protein_coding MGP_C3HHeJ_T0023437.1 MGP_C3HHeJ_G0016593.1 mouse_genomes_project 1 179006704 179007659 + MGP_C3HHeJ_P0023437 Olfr414 protein_coding protein_coding MGP_C3HHeJ_T0000412.1 MGP_C3HHeJ_G0000359.1 mouse_genomes_project 1 33041928 33044961 + TEC TEC MGP_C3HHeJ_T0023984.1 MGP_C3HHeJ_G0016706.1 mouse_genomes_project 1 196947070 196985525 - MGP_C3HHeJ_P0023984 Dtl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023985.1 MGP_C3HHeJ_G0016706.1 mouse_genomes_project 1 196947079 196985548 - MGP_C3HHeJ_P0023985 Dtl protein_coding protein_coding MGP_C3HHeJ_T0023986.1 MGP_C3HHeJ_G0016706.1 mouse_genomes_project 1 196948827 196985518 - Dtl protein_coding processed_transcript MGP_C3HHeJ_T0023987.1 MGP_C3HHeJ_G0016706.1 mouse_genomes_project 1 196959503 196985517 - MGP_C3HHeJ_P0023987 Dtl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023988.1 MGP_C3HHeJ_G0016706.1 mouse_genomes_project 1 196969557 196985515 - Dtl protein_coding retained_intron MGP_C3HHeJ_T0023989.1 MGP_C3HHeJ_G0016706.1 mouse_genomes_project 1 196980822 196985517 - Dtl protein_coding retained_intron MGP_C3HHeJ_T0009450.1 MGP_C3HHeJ_G0007583.1 mouse_genomes_project 1 154618663 154618721 + Mir7682 miRNA miRNA MGP_C3HHeJ_T0000743.1 MGP_C3HHeJ_G0000687.1 mouse_genomes_project 1 187094166 187095806 - TEC TEC MGP_C3HHeJ_T0012265.1 MGP_C3HHeJ_G0010369.1 mouse_genomes_project 1 196370723 196370928 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098324.1 MGP_C3HHeJ_G0036535.1 mouse_genomes_project 1 133800778 133803180 - Gm29488 sense_intronic sense_intronic MGP_C3HHeJ_T0000366.1 MGP_C3HHeJ_G0000316.1 mouse_genomes_project 1 18720529 18722616 + TEC TEC MGP_C3HHeJ_T0005892.1 MGP_C3HHeJ_G0004928.1 mouse_genomes_project 1 166905705 166907528 - Gm26523 lincRNA lincRNA MGP_C3HHeJ_T0101595.1 MGP_C3HHeJ_G0039561.1 mouse_genomes_project 1 178220110 178222992 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098650.1 MGP_C3HHeJ_G0036844.1 mouse_genomes_project 1 133461662 133461756 - Gm25549 snRNA snRNA MGP_C3HHeJ_T0009381.1 MGP_C3HHeJ_G0007514.1 mouse_genomes_project 1 18143789 18143862 + Mir206 miRNA miRNA MGP_C3HHeJ_T0000594.1 MGP_C3HHeJ_G0000541.1 mouse_genomes_project 1 132852075 132853623 + TEC TEC MGP_C3HHeJ_T0020662.1 MGP_C3HHeJ_G0015987.1 mouse_genomes_project 1 83292848 83304661 - MGP_C3HHeJ_P0020662 Tm4sf20 protein_coding protein_coding MGP_C3HHeJ_T0020663.1 MGP_C3HHeJ_G0015987.1 mouse_genomes_project 1 83293601 83304661 - Tm4sf20 protein_coding processed_transcript MGP_C3HHeJ_T0002852.1 MGP_C3HHeJ_G0002687.1 mouse_genomes_project 1 159170720 159211871 + Gm37571 antisense antisense MGP_C3HHeJ_T0000563.1 MGP_C3HHeJ_G0000510.1 mouse_genomes_project 1 123377244 123380302 + TEC TEC MGP_C3HHeJ_T0002733.1 MGP_C3HHeJ_G0002599.1 mouse_genomes_project 1 42398665 42400600 - Gm29155 antisense antisense MGP_C3HHeJ_T0002734.1 MGP_C3HHeJ_G0002599.1 mouse_genomes_project 1 42400288 42400557 - Gm29155 antisense antisense MGP_C3HHeJ_T0016772.1 MGP_C3HHeJ_G0014859.1 mouse_genomes_project 1 63062246 63069531 + Platr12 processed_transcript antisense MGP_C3HHeJ_T0016773.1 MGP_C3HHeJ_G0014859.1 mouse_genomes_project 1 63062641 63069884 + Platr12 processed_transcript lincRNA MGP_C3HHeJ_T0099845.1 MGP_C3HHeJ_G0038039.1 mouse_genomes_project 1 52332235 52332336 + Gm24349 snoRNA snoRNA MGP_C3HHeJ_T0000322.1 MGP_C3HHeJ_G0000272.1 mouse_genomes_project 1 411548 413781 - TEC TEC MGP_C3HHeJ_T0020377.1 MGP_C3HHeJ_G0015942.1 mouse_genomes_project 1 75450013 75452991 + Zfand2b protein_coding retained_intron MGP_C3HHeJ_T0020378.1 MGP_C3HHeJ_G0015942.1 mouse_genomes_project 1 75450013 75452995 + MGP_C3HHeJ_P0020378 Zfand2b protein_coding protein_coding MGP_C3HHeJ_T0020379.1 MGP_C3HHeJ_G0015942.1 mouse_genomes_project 1 75450013 75452118 + MGP_C3HHeJ_P0020379 Zfand2b protein_coding protein_coding MGP_C3HHeJ_T0020380.1 MGP_C3HHeJ_G0015942.1 mouse_genomes_project 1 75450022 75452991 + MGP_C3HHeJ_P0020380 Zfand2b protein_coding protein_coding MGP_C3HHeJ_T0020381.1 MGP_C3HHeJ_G0015942.1 mouse_genomes_project 1 75450025 75451258 + Zfand2b protein_coding retained_intron MGP_C3HHeJ_T0020382.1 MGP_C3HHeJ_G0015942.1 mouse_genomes_project 1 75450033 75450997 + Zfand2b protein_coding retained_intron MGP_C3HHeJ_T0020383.1 MGP_C3HHeJ_G0015942.1 mouse_genomes_project 1 75450068 75451935 + Zfand2b protein_coding retained_intron MGP_C3HHeJ_T0020384.1 MGP_C3HHeJ_G0015942.1 mouse_genomes_project 1 75450145 75452053 + Zfand2b protein_coding retained_intron MGP_C3HHeJ_T0020385.1 MGP_C3HHeJ_G0015942.1 mouse_genomes_project 1 75450295 75452768 + MGP_C3HHeJ_P0020385 Zfand2b protein_coding protein_coding MGP_C3HHeJ_T0000581.1 MGP_C3HHeJ_G0000528.1 mouse_genomes_project 1 129631046 129631589 + TEC TEC MGP_C3HHeJ_T0002850.1 MGP_C3HHeJ_G0002685.1 mouse_genomes_project 1 157006365 157012139 - Gm28513 antisense antisense MGP_C3HHeJ_T0005890.1 MGP_C3HHeJ_G0004927.1 mouse_genomes_project 1 165472827 165483262 + Gm31925 lincRNA lincRNA MGP_C3HHeJ_T0005891.1 MGP_C3HHeJ_G0004927.1 mouse_genomes_project 1 165474465 165485486 + Gm31925 lincRNA lincRNA MGP_C3HHeJ_T0005766.1 MGP_C3HHeJ_G0004829.1 mouse_genomes_project 1 93429382 93434767 + Gm29099 lincRNA lincRNA MGP_C3HHeJ_T0011954.1 MGP_C3HHeJ_G0010058.1 mouse_genomes_project 1 58271524 58278569 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000764.1 MGP_C3HHeJ_G0000707.1 mouse_genomes_project 1 196945598 196946605 - TEC TEC MGP_C3HHeJ_T0022109.1 MGP_C3HHeJ_G0016302.1 mouse_genomes_project 1 138609278 138636793 + MGP_C3HHeJ_P0022109 Tmem9 protein_coding protein_coding MGP_C3HHeJ_T0022110.1 MGP_C3HHeJ_G0016302.1 mouse_genomes_project 1 138619984 138637868 + MGP_C3HHeJ_P0022110 Tmem9 protein_coding protein_coding MGP_C3HHeJ_T0022111.1 MGP_C3HHeJ_G0016302.1 mouse_genomes_project 1 138620079 138636818 + MGP_C3HHeJ_P0022111 Tmem9 protein_coding protein_coding MGP_C3HHeJ_T0022112.1 MGP_C3HHeJ_G0016302.1 mouse_genomes_project 1 138629519 138636925 + Tmem9 protein_coding retained_intron MGP_C3HHeJ_T0022113.1 MGP_C3HHeJ_G0016302.1 mouse_genomes_project 1 138635779 138637306 + Tmem9 protein_coding processed_transcript MGP_C3HHeJ_T0011874.1 MGP_C3HHeJ_G0009978.1 mouse_genomes_project 1 32831671 32833068 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101549.1 MGP_C3HHeJ_G0039515.1 mouse_genomes_project 1 52649437 52651928 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005663.1 MGP_C3HHeJ_G0004747.1 mouse_genomes_project 1 56703920 56705981 + 1700126A01Rik lincRNA lincRNA MGP_C3HHeJ_T0023712.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186981270 187108147 - MGP_C3HHeJ_P0023712 Enah protein_coding protein_coding MGP_C3HHeJ_T0023713.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186989225 187108476 - MGP_C3HHeJ_P0023713 Enah protein_coding protein_coding MGP_C3HHeJ_T0023714.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186989272 187108466 - MGP_C3HHeJ_P0023714 Enah protein_coding protein_coding MGP_C3HHeJ_T0023715.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186989272 187108466 - MGP_C3HHeJ_P0023715 Enah protein_coding protein_coding MGP_C3HHeJ_T0023716.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186990151 186993239 - Enah protein_coding retained_intron MGP_C3HHeJ_T0023717.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186990305 186991673 - Enah protein_coding retained_intron MGP_C3HHeJ_T0023718.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186990333 187102902 - MGP_C3HHeJ_P0023718 Enah protein_coding protein_coding MGP_C3HHeJ_T0023719.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186990340 187108147 - MGP_C3HHeJ_P0023719 Enah protein_coding protein_coding MGP_C3HHeJ_T0023720.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186990340 187108147 - MGP_C3HHeJ_P0023720 Enah protein_coding protein_coding MGP_C3HHeJ_T0023721.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186990340 187108147 - MGP_C3HHeJ_P0023721 Enah protein_coding protein_coding MGP_C3HHeJ_T0023722.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186990535 187002192 - Enah protein_coding retained_intron MGP_C3HHeJ_T0023723.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186995542 186997432 - Enah protein_coding retained_intron MGP_C3HHeJ_T0023724.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 187004282 187008596 - MGP_C3HHeJ_P0023724 Enah protein_coding protein_coding MGP_C3HHeJ_T0023725.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 187008030 187043576 - Enah protein_coding retained_intron MGP_C3HHeJ_T0023726.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 187019969 187027003 - Enah protein_coding retained_intron MGP_C3HHeJ_T0023727.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 187043174 187108162 - Enah protein_coding retained_intron MGP_C3HHeJ_T0022997.1 MGP_C3HHeJ_G0016470.1 mouse_genomes_project 1 170098732 170114276 + MGP_C3HHeJ_P0022997 Tada1 protein_coding protein_coding MGP_C3HHeJ_T0022998.1 MGP_C3HHeJ_G0016470.1 mouse_genomes_project 1 170098952 170109583 + Tada1 protein_coding retained_intron MGP_C3HHeJ_T0022999.1 MGP_C3HHeJ_G0016470.1 mouse_genomes_project 1 170098959 170104805 + Tada1 protein_coding retained_intron MGP_C3HHeJ_T0023000.1 MGP_C3HHeJ_G0016470.1 mouse_genomes_project 1 170098974 170102106 + MGP_C3HHeJ_P0023000 Tada1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023361.1 MGP_C3HHeJ_G0016555.1 mouse_genomes_project 1 176836990 176841472 + Cfap45 protein_coding retained_intron MGP_C3HHeJ_T0023362.1 MGP_C3HHeJ_G0016555.1 mouse_genomes_project 1 176837233 176862996 + MGP_C3HHeJ_P0023362 Cfap45 protein_coding protein_coding MGP_C3HHeJ_T0023363.1 MGP_C3HHeJ_G0016555.1 mouse_genomes_project 1 176837325 176849914 + Cfap45 protein_coding retained_intron MGP_C3HHeJ_T0023364.1 MGP_C3HHeJ_G0016555.1 mouse_genomes_project 1 176837328 176849808 + MGP_C3HHeJ_P0023364 Cfap45 protein_coding protein_coding MGP_C3HHeJ_T0023365.1 MGP_C3HHeJ_G0016555.1 mouse_genomes_project 1 176837370 176849785 + MGP_C3HHeJ_P0023365 Cfap45 protein_coding protein_coding MGP_C3HHeJ_T0023366.1 MGP_C3HHeJ_G0016555.1 mouse_genomes_project 1 176843285 176849868 + MGP_C3HHeJ_P0023366 Cfap45 protein_coding protein_coding MGP_C3HHeJ_T0023367.1 MGP_C3HHeJ_G0016555.1 mouse_genomes_project 1 176843646 176849868 + MGP_C3HHeJ_P0023367 Cfap45 protein_coding protein_coding MGP_C3HHeJ_T0023368.1 MGP_C3HHeJ_G0016555.1 mouse_genomes_project 1 176854799 176857772 + MGP_C3HHeJ_P0023368 Cfap45 protein_coding protein_coding MGP_C3HHeJ_T0012126.1 MGP_C3HHeJ_G0010230.1 mouse_genomes_project 1 125329352 125329469 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021240.1 MGP_C3HHeJ_G0016112.1 mouse_genomes_project 1 94879200 94890290 + MGP_C3HHeJ_P0021240 Bok protein_coding protein_coding MGP_C3HHeJ_T0021241.1 MGP_C3HHeJ_G0016112.1 mouse_genomes_project 1 94879242 94889736 + MGP_C3HHeJ_P0021241 Bok protein_coding protein_coding MGP_C3HHeJ_T0021242.1 MGP_C3HHeJ_G0016112.1 mouse_genomes_project 1 94879803 94888661 + MGP_C3HHeJ_P0021242 Bok protein_coding protein_coding MGP_C3HHeJ_T0021243.1 MGP_C3HHeJ_G0016112.1 mouse_genomes_project 1 94883814 94889995 + MGP_C3HHeJ_P0021243 Bok protein_coding protein_coding MGP_C3HHeJ_T0021244.1 MGP_C3HHeJ_G0016112.1 mouse_genomes_project 1 94888406 94889981 + Bok protein_coding processed_transcript MGP_C3HHeJ_T0022793.1 MGP_C3HHeJ_G0016426.1 mouse_genomes_project 1 166164398 166192783 + MGP_C3HHeJ_P0022793 Vamp4 protein_coding protein_coding MGP_C3HHeJ_T0022794.1 MGP_C3HHeJ_G0016426.1 mouse_genomes_project 1 166164510 166175899 + Vamp4 protein_coding retained_intron MGP_C3HHeJ_T0022795.1 MGP_C3HHeJ_G0016426.1 mouse_genomes_project 1 166164522 166192782 + MGP_C3HHeJ_P0022795 Vamp4 protein_coding protein_coding MGP_C3HHeJ_T0022796.1 MGP_C3HHeJ_G0016426.1 mouse_genomes_project 1 166164711 166192777 + MGP_C3HHeJ_P0022796 Vamp4 protein_coding protein_coding MGP_C3HHeJ_T0022797.1 MGP_C3HHeJ_G0016426.1 mouse_genomes_project 1 166168704 166188459 + Vamp4 protein_coding processed_transcript MGP_C3HHeJ_T0021278.1 MGP_C3HHeJ_G0016120.1 mouse_genomes_project 1 96564351 96586014 + MGP_C3HHeJ_P0021278 Fam174a protein_coding protein_coding MGP_C3HHeJ_T0021279.1 MGP_C3HHeJ_G0016120.1 mouse_genomes_project 1 96564356 96578674 + MGP_C3HHeJ_P0021279 Fam174a protein_coding protein_coding MGP_C3HHeJ_T0020016.1 MGP_C3HHeJ_G0015868.1 mouse_genomes_project 1 64656526 64663722 - MGP_C3HHeJ_P0020016 Fzd5 protein_coding protein_coding MGP_C3HHeJ_T0020017.1 MGP_C3HHeJ_G0015868.1 mouse_genomes_project 1 64660439 64663720 - MGP_C3HHeJ_P0020017 Fzd5 protein_coding protein_coding MGP_C3HHeJ_T0005924.1 MGP_C3HHeJ_G0004956.1 mouse_genomes_project 1 182120485 182129369 + Gm37306 lincRNA lincRNA MGP_C3HHeJ_T0019659.1 MGP_C3HHeJ_G0015806.1 mouse_genomes_project 1 54910361 55276440 + MGP_C3HHeJ_P0019659 Plcl1 protein_coding protein_coding MGP_C3HHeJ_T0019660.1 MGP_C3HHeJ_G0015806.1 mouse_genomes_project 1 55223648 55257296 + Plcl1 protein_coding processed_transcript MGP_C3HHeJ_T0000659.1 MGP_C3HHeJ_G0000604.1 mouse_genomes_project 1 159234096 159234843 - TEC TEC MGP_C3HHeJ_T0020815.1 MGP_C3HHeJ_G0016018.1 mouse_genomes_project 1 87417558 87422892 - MGP_C3HHeJ_P0020815 Nppc protein_coding protein_coding MGP_C3HHeJ_T0012267.1 MGP_C3HHeJ_G0010371.1 mouse_genomes_project 1 196806992 196807574 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023640.1 MGP_C3HHeJ_G0016633.1 mouse_genomes_project 1 185622337 185677002 + MGP_C3HHeJ_P0023640 Lin9 protein_coding protein_coding MGP_C3HHeJ_T0023641.1 MGP_C3HHeJ_G0016633.1 mouse_genomes_project 1 185622521 185677009 + MGP_C3HHeJ_P0023641 Lin9 protein_coding protein_coding MGP_C3HHeJ_T0023642.1 MGP_C3HHeJ_G0016633.1 mouse_genomes_project 1 185622540 185666134 + Lin9 protein_coding retained_intron MGP_C3HHeJ_T0023643.1 MGP_C3HHeJ_G0016633.1 mouse_genomes_project 1 185622542 185630381 + Lin9 protein_coding processed_transcript MGP_C3HHeJ_T0023644.1 MGP_C3HHeJ_G0016633.1 mouse_genomes_project 1 185622547 185677002 + MGP_C3HHeJ_P0023644 Lin9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023645.1 MGP_C3HHeJ_G0016633.1 mouse_genomes_project 1 185622553 185658972 + Lin9 protein_coding retained_intron MGP_C3HHeJ_T0023646.1 MGP_C3HHeJ_G0016633.1 mouse_genomes_project 1 185643586 185658024 + MGP_C3HHeJ_P0023646 Lin9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023647.1 MGP_C3HHeJ_G0016633.1 mouse_genomes_project 1 185663245 185675192 + Lin9 protein_coding retained_intron MGP_C3HHeJ_T0023648.1 MGP_C3HHeJ_G0016633.1 mouse_genomes_project 1 185665394 185677002 + Lin9 protein_coding retained_intron MGP_C3HHeJ_T0019601.1 MGP_C3HHeJ_G0015796.1 mouse_genomes_project 1 53922118 54017402 - MGP_C3HHeJ_P0019601 Pgap1 protein_coding protein_coding MGP_C3HHeJ_T0019602.1 MGP_C3HHeJ_G0015796.1 mouse_genomes_project 1 53977824 54017404 - Pgap1 protein_coding retained_intron MGP_C3HHeJ_T0019603.1 MGP_C3HHeJ_G0015796.1 mouse_genomes_project 1 53980402 53983649 - Pgap1 protein_coding retained_intron MGP_C3HHeJ_T0019604.1 MGP_C3HHeJ_G0015796.1 mouse_genomes_project 1 54014322 54017347 - Pgap1 protein_coding retained_intron MGP_C3HHeJ_T0021408.1 MGP_C3HHeJ_G0016153.1 mouse_genomes_project 1 112713122 112808589 - MGP_C3HHeJ_P0021408 Cdh19 protein_coding protein_coding MGP_C3HHeJ_T0021409.1 MGP_C3HHeJ_G0016153.1 mouse_genomes_project 1 112772926 112808810 - Cdh19 protein_coding processed_transcript MGP_C3HHeJ_T0011779.1 MGP_C3HHeJ_G0009883.1 mouse_genomes_project 1 5893788 5893982 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000576.1 MGP_C3HHeJ_G0000523.1 mouse_genomes_project 1 128118937 128121634 - TEC TEC MGP_C3HHeJ_T0000598.1 MGP_C3HHeJ_G0000545.1 mouse_genomes_project 1 134328825 134330736 + TEC TEC MGP_C3HHeJ_T0005598.1 MGP_C3HHeJ_G0004704.1 mouse_genomes_project 1 31355738 31358440 - Gm37591 lincRNA lincRNA MGP_C3HHeJ_T0098677.1 MGP_C3HHeJ_G0036871.1 mouse_genomes_project 1 183273428 183273534 + Gm24919 snRNA snRNA MGP_C3HHeJ_T0099905.1 MGP_C3HHeJ_G0038099.1 mouse_genomes_project 1 164590557 164590634 + Snord80 snoRNA snoRNA MGP_C3HHeJ_T0020865.1 MGP_C3HHeJ_G0016030.1 mouse_genomes_project 1 88198932 88207284 - MGP_C3HHeJ_P0020865 Kcnj13 protein_coding protein_coding MGP_C3HHeJ_T0020866.1 MGP_C3HHeJ_G0016030.1 mouse_genomes_project 1 88199571 88201959 - MGP_C3HHeJ_P0020866 Kcnj13 protein_coding protein_coding MGP_C3HHeJ_T0098329.1 MGP_C3HHeJ_G0036540.1 mouse_genomes_project 1 155883418 155887876 - Gm15479 sense_intronic sense_intronic MGP_C3HHeJ_T0005902.1 MGP_C3HHeJ_G0004937.1 mouse_genomes_project 1 168614740 168616643 + 1700029M03Rik lincRNA lincRNA MGP_C3HHeJ_T0005903.1 MGP_C3HHeJ_G0004937.1 mouse_genomes_project 1 168614742 168615222 + 1700029M03Rik lincRNA lincRNA MGP_C3HHeJ_T0000744.1 MGP_C3HHeJ_G0000688.1 mouse_genomes_project 1 187522489 187523247 - TEC TEC MGP_C3HHeJ_T0000745.1 MGP_C3HHeJ_G0000688.1 mouse_genomes_project 1 187522844 187523246 - TEC TEC MGP_C3HHeJ_T0023932.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196295474 196318059 + MGP_C3HHeJ_P0023932 Angel2 protein_coding protein_coding MGP_C3HHeJ_T0023933.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196298854 196309546 + Angel2 protein_coding retained_intron MGP_C3HHeJ_T0023934.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196298854 196318059 + MGP_C3HHeJ_P0023934 Angel2 protein_coding protein_coding MGP_C3HHeJ_T0023935.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196298854 196318059 + MGP_C3HHeJ_P0023935 Angel2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023936.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196298854 196318059 + MGP_C3HHeJ_P0023936 Angel2 protein_coding protein_coding MGP_C3HHeJ_T0023937.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196299946 196308813 + MGP_C3HHeJ_P0023937 Angel2 protein_coding protein_coding MGP_C3HHeJ_T0023938.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196299969 196318059 + Angel2 protein_coding processed_transcript MGP_C3HHeJ_T0023939.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196299974 196308588 + MGP_C3HHeJ_P0023939 Angel2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023940.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196299976 196309116 + Angel2 protein_coding retained_intron MGP_C3HHeJ_T0023941.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196308362 196310380 + Angel2 protein_coding retained_intron MGP_C3HHeJ_T0020646.1 MGP_C3HHeJ_G0015985.1 mouse_genomes_project 1 83115063 83172130 + Col4a3 protein_coding retained_intron MGP_C3HHeJ_T0020647.1 MGP_C3HHeJ_G0015985.1 mouse_genomes_project 1 83115118 83254104 + MGP_C3HHeJ_P0020647 Col4a3 protein_coding protein_coding MGP_C3HHeJ_T0020648.1 MGP_C3HHeJ_G0015985.1 mouse_genomes_project 1 83247286 83250966 + MGP_C3HHeJ_P0020648 Col4a3 protein_coding protein_coding MGP_C3HHeJ_T0020649.1 MGP_C3HHeJ_G0015985.1 mouse_genomes_project 1 83247286 83250867 + MGP_C3HHeJ_P0020649 Col4a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002698.1 MGP_C3HHeJ_G0002571.1 mouse_genomes_project 1 15094236 15142998 - Gm16070 antisense antisense MGP_C3HHeJ_T0002699.1 MGP_C3HHeJ_G0002571.1 mouse_genomes_project 1 15111179 15143360 - Gm16070 antisense antisense MGP_C3HHeJ_T0002700.1 MGP_C3HHeJ_G0002571.1 mouse_genomes_project 1 15140697 15142969 - Gm16070 antisense antisense MGP_C3HHeJ_T0009435.1 MGP_C3HHeJ_G0007568.1 mouse_genomes_project 1 97602283 97602393 + Gm22917 miRNA miRNA MGP_C3HHeJ_T0012228.1 MGP_C3HHeJ_G0010332.1 mouse_genomes_project 1 174803036 174803372 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000522.1 MGP_C3HHeJ_G0000469.1 mouse_genomes_project 1 87637050 87639361 + TEC TEC MGP_C3HHeJ_T0101555.1 MGP_C3HHeJ_G0039521.1 mouse_genomes_project 1 70236685 70236773 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0000733.1 MGP_C3HHeJ_G0000677.1 mouse_genomes_project 1 185106136 185108807 - TEC TEC MGP_C3HHeJ_T0009446.1 MGP_C3HHeJ_G0007579.1 mouse_genomes_project 1 137357239 137357329 + Gm22232 miRNA miRNA MGP_C3HHeJ_T0005654.1 MGP_C3HHeJ_G0004741.1 mouse_genomes_project 1 50927104 50928681 - Gm28055 lincRNA lincRNA MGP_C3HHeJ_T0005655.1 MGP_C3HHeJ_G0004741.1 mouse_genomes_project 1 50927905 50972854 - Gm28055 lincRNA lincRNA MGP_C3HHeJ_T0000468.1 MGP_C3HHeJ_G0000415.1 mouse_genomes_project 1 64662210 64666618 + TEC TEC MGP_C3HHeJ_T0005719.1 MGP_C3HHeJ_G0004788.1 mouse_genomes_project 1 76327908 76329993 - Gm29065 lincRNA lincRNA MGP_C3HHeJ_T0098313.1 MGP_C3HHeJ_G0036525.1 mouse_genomes_project 1 51101374 51103873 - Gm28323 sense_intronic sense_intronic MGP_C3HHeJ_T0023966.1 MGP_C3HHeJ_G0016700.1 mouse_genomes_project 1 196476604 196487201 + Batf3 protein_coding processed_transcript MGP_C3HHeJ_T0023967.1 MGP_C3HHeJ_G0016700.1 mouse_genomes_project 1 196476637 196487660 + Batf3 protein_coding processed_transcript MGP_C3HHeJ_T0023968.1 MGP_C3HHeJ_G0016700.1 mouse_genomes_project 1 196477082 196487658 + MGP_C3HHeJ_P0023968 Batf3 protein_coding protein_coding MGP_C3HHeJ_T0023969.1 MGP_C3HHeJ_G0016700.1 mouse_genomes_project 1 196477140 196487201 + Batf3 protein_coding processed_transcript MGP_C3HHeJ_T0023970.1 MGP_C3HHeJ_G0016700.1 mouse_genomes_project 1 196479215 196487624 + Batf3 protein_coding retained_intron MGP_C3HHeJ_T0021081.1 MGP_C3HHeJ_G0016077.1 mouse_genomes_project 1 92564744 92606488 + MGP_C3HHeJ_P0021081 Traf3ip1 protein_coding protein_coding MGP_C3HHeJ_T0021082.1 MGP_C3HHeJ_G0016077.1 mouse_genomes_project 1 92564791 92607839 + MGP_C3HHeJ_P0021082 Traf3ip1 protein_coding protein_coding MGP_C3HHeJ_T0021083.1 MGP_C3HHeJ_G0016077.1 mouse_genomes_project 1 92591025 92607839 + Traf3ip1 protein_coding retained_intron MGP_C3HHeJ_T0000459.1 MGP_C3HHeJ_G0000406.1 mouse_genomes_project 1 60811985 60814470 + TEC TEC MGP_C3HHeJ_T0009419.1 MGP_C3HHeJ_G0007552.1 mouse_genomes_project 1 77847336 77847452 - Mir6352 miRNA miRNA MGP_C3HHeJ_T0018517.1 MGP_C3HHeJ_G0015585.1 mouse_genomes_project 1 1934179 1975942 + MGP_C3HHeJ_P0018517 Tcea1 protein_coding protein_coding MGP_C3HHeJ_T0018518.1 MGP_C3HHeJ_G0015585.1 mouse_genomes_project 1 1934403 1975946 + MGP_C3HHeJ_P0018518 Tcea1 protein_coding protein_coding MGP_C3HHeJ_T0000779.1 MGP_C3HHeJ_G0000721.1 mouse_genomes_project 1 200544796 200547093 + TEC TEC MGP_C3HHeJ_T0022965.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169579414 169649847 - MGP_C3HHeJ_P0022965 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022966.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169579414 169719680 - MGP_C3HHeJ_P0022966 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022967.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169589683 169628227 - MGP_C3HHeJ_P0022967 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022968.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169589717 169719620 - MGP_C3HHeJ_P0022968 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022969.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169589717 169719624 - MGP_C3HHeJ_P0022969 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022970.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169589721 169649847 - MGP_C3HHeJ_P0022970 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022971.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169589748 169594421 - MGP_C3HHeJ_P0022971 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022972.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169589844 169607063 - Pou2f1 protein_coding retained_intron MGP_C3HHeJ_T0022973.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169589868 169719631 - MGP_C3HHeJ_P0022973 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022974.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169589942 169649799 - MGP_C3HHeJ_P0022974 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022975.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169589998 169646618 - MGP_C3HHeJ_P0022975 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022976.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169594187 169649910 - Pou2f1 protein_coding retained_intron MGP_C3HHeJ_T0022977.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169594342 169649838 - Pou2f1 protein_coding retained_intron MGP_C3HHeJ_T0022978.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169606061 169719617 - Pou2f1 protein_coding retained_intron MGP_C3HHeJ_T0022979.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169626266 169719615 - MGP_C3HHeJ_P0022979 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022980.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169644563 169719631 - Pou2f1 protein_coding retained_intron MGP_C3HHeJ_T0022981.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169646597 169719611 - MGP_C3HHeJ_P0022981 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0000749.1 MGP_C3HHeJ_G0000692.1 mouse_genomes_project 1 189559043 189559798 + TEC TEC MGP_C3HHeJ_T0022157.1 MGP_C3HHeJ_G0016312.1 mouse_genomes_project 1 139260030 139265183 + MGP_C3HHeJ_P0022157 Zfp281 protein_coding protein_coding MGP_C3HHeJ_T0022158.1 MGP_C3HHeJ_G0016312.1 mouse_genomes_project 1 139260030 139265183 + MGP_C3HHeJ_P0022158 Zfp281 protein_coding protein_coding MGP_C3HHeJ_T0099827.1 MGP_C3HHeJ_G0038021.1 mouse_genomes_project 1 14927991 14928102 + Gm25166 snoRNA snoRNA MGP_C3HHeJ_T0021659.1 MGP_C3HHeJ_G0016204.1 mouse_genomes_project 1 132953885 133000997 - MGP_C3HHeJ_P0021659 Zp3r protein_coding protein_coding MGP_C3HHeJ_T0021660.1 MGP_C3HHeJ_G0016204.1 mouse_genomes_project 1 132953885 133000997 - MGP_C3HHeJ_P0021660 Zp3r protein_coding protein_coding MGP_C3HHeJ_T0021661.1 MGP_C3HHeJ_G0016204.1 mouse_genomes_project 1 132953888 133000988 - MGP_C3HHeJ_P0021661 Zp3r protein_coding protein_coding MGP_C3HHeJ_T0012095.1 MGP_C3HHeJ_G0010199.1 mouse_genomes_project 1 114015591 114018389 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000757.1 MGP_C3HHeJ_G0000700.1 mouse_genomes_project 1 192447833 192455307 + TEC TEC MGP_C3HHeJ_T0002779.1 MGP_C3HHeJ_G0002631.1 mouse_genomes_project 1 86622083 86626157 - Gm28884 antisense antisense MGP_C3HHeJ_T0020799.1 MGP_C3HHeJ_G0016014.1 mouse_genomes_project 1 87140968 87142602 + MGP_C3HHeJ_P0020799 1700019O17Rik protein_coding protein_coding MGP_C3HHeJ_T0098598.1 MGP_C3HHeJ_G0036792.1 mouse_genomes_project 1 7144498 7144602 - Gm24674 snRNA snRNA MGP_C3HHeJ_T0005664.1 MGP_C3HHeJ_G0004748.1 mouse_genomes_project 1 56780872 56796067 - BC055402 lincRNA lincRNA MGP_C3HHeJ_T0002900.1 MGP_C3HHeJ_G0002726.1 mouse_genomes_project 1 185219821 185237053 + Gm31728 antisense antisense MGP_C3HHeJ_T0019176.1 MGP_C3HHeJ_G0015710.1 mouse_genomes_project 1 35786453 35893887 - MGP_C3HHeJ_P0019176 Mgat4a protein_coding protein_coding MGP_C3HHeJ_T0019177.1 MGP_C3HHeJ_G0015710.1 mouse_genomes_project 1 35793930 35898449 - MGP_C3HHeJ_P0019177 Mgat4a protein_coding protein_coding MGP_C3HHeJ_T0019178.1 MGP_C3HHeJ_G0015710.1 mouse_genomes_project 1 35812428 35846861 - MGP_C3HHeJ_P0019178 Mgat4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019179.1 MGP_C3HHeJ_G0015710.1 mouse_genomes_project 1 35812431 35846823 - MGP_C3HHeJ_P0019179 Mgat4a protein_coding protein_coding MGP_C3HHeJ_T0019180.1 MGP_C3HHeJ_G0015710.1 mouse_genomes_project 1 35846453 35849566 - Mgat4a protein_coding retained_intron MGP_C3HHeJ_T0019181.1 MGP_C3HHeJ_G0015710.1 mouse_genomes_project 1 35890702 35893734 - Mgat4a protein_coding retained_intron MGP_C3HHeJ_T0012222.1 MGP_C3HHeJ_G0010326.1 mouse_genomes_project 1 170525048 170525360 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005584.1 MGP_C3HHeJ_G0004691.1 mouse_genomes_project 1 18143802 18149069 + Gm28653 lincRNA lincRNA MGP_C3HHeJ_T0022267.1 MGP_C3HHeJ_G0016334.1 mouse_genomes_project 1 147065849 147104504 - MGP_C3HHeJ_P0022267 Rgs13 protein_coding protein_coding MGP_C3HHeJ_T0022268.1 MGP_C3HHeJ_G0016334.1 mouse_genomes_project 1 147065862 147104407 - MGP_C3HHeJ_P0022268 Rgs13 protein_coding protein_coding MGP_C3HHeJ_T0009425.1 MGP_C3HHeJ_G0007558.1 mouse_genomes_project 1 86443213 86443291 + Gm25472 miRNA miRNA MGP_C3HHeJ_T0023341.1 MGP_C3HHeJ_G0016551.1 mouse_genomes_project 1 176681558 176689044 + MGP_C3HHeJ_P0023341 Pigm protein_coding protein_coding MGP_C3HHeJ_T0000695.1 MGP_C3HHeJ_G0000640.1 mouse_genomes_project 1 166709549 166711532 + TEC TEC MGP_C3HHeJ_T0023990.1 MGP_C3HHeJ_G0016707.1 mouse_genomes_project 1 196985639 197034434 + MGP_C3HHeJ_P0023990 Ints7 protein_coding protein_coding MGP_C3HHeJ_T0023991.1 MGP_C3HHeJ_G0016707.1 mouse_genomes_project 1 196985729 197019566 + Ints7 protein_coding retained_intron MGP_C3HHeJ_T0023992.1 MGP_C3HHeJ_G0016707.1 mouse_genomes_project 1 196985744 197032370 + MGP_C3HHeJ_P0023992 Ints7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023993.1 MGP_C3HHeJ_G0016707.1 mouse_genomes_project 1 196985764 197018184 + MGP_C3HHeJ_P0023993 Ints7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023994.1 MGP_C3HHeJ_G0016707.1 mouse_genomes_project 1 196985764 197033492 + MGP_C3HHeJ_P0023994 Ints7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023995.1 MGP_C3HHeJ_G0016707.1 mouse_genomes_project 1 196985778 196993531 + Ints7 protein_coding retained_intron MGP_C3HHeJ_T0101604.1 MGP_C3HHeJ_G0039570.1 mouse_genomes_project 1 182521247 182714898 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011143.1 MGP_C3HHeJ_G0009276.1 mouse_genomes_project 1 7307842 7308082 + Gm26348 misc_RNA misc_RNA MGP_C3HHeJ_T0000625.1 MGP_C3HHeJ_G0000570.1 mouse_genomes_project 1 140878499 140884314 - TEC TEC MGP_C3HHeJ_T0000406.1 MGP_C3HHeJ_G0000353.1 mouse_genomes_project 1 31910006 31910347 + TEC TEC MGP_C3HHeJ_T0000403.1 MGP_C3HHeJ_G0000351.1 mouse_genomes_project 1 31825188 31826077 + TEC TEC MGP_C3HHeJ_T0000404.1 MGP_C3HHeJ_G0000351.1 mouse_genomes_project 1 31825207 31826077 + TEC TEC MGP_C3HHeJ_T0098659.1 MGP_C3HHeJ_G0036853.1 mouse_genomes_project 1 147893551 147893657 - Gm22681 snRNA snRNA MGP_C3HHeJ_T0002869.1 MGP_C3HHeJ_G0002700.1 mouse_genomes_project 1 166581389 166664226 + Gm37273 antisense antisense MGP_C3HHeJ_T0000535.1 MGP_C3HHeJ_G0000482.1 mouse_genomes_project 1 91920510 91921347 - TEC TEC MGP_C3HHeJ_T0002754.1 MGP_C3HHeJ_G0002614.1 mouse_genomes_project 1 61971455 61976370 - Pard3bos2 antisense antisense MGP_C3HHeJ_T0018796.1 MGP_C3HHeJ_G0015632.1 mouse_genomes_project 1 14549137 14570121 + MGP_C3HHeJ_P0018796 Gdap1 protein_coding protein_coding MGP_C3HHeJ_T0018797.1 MGP_C3HHeJ_G0015632.1 mouse_genomes_project 1 14549179 14564529 + Gdap1 protein_coding retained_intron MGP_C3HHeJ_T0018798.1 MGP_C3HHeJ_G0015632.1 mouse_genomes_project 1 14549243 14567481 + MGP_C3HHeJ_P0018798 Gdap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018799.1 MGP_C3HHeJ_G0015632.1 mouse_genomes_project 1 14564154 14567899 + Gdap1 protein_coding retained_intron MGP_C3HHeJ_T0097954.1 MGP_C3HHeJ_G0036166.1 mouse_genomes_project 1 35306414 35306533 + n-R5s210 rRNA rRNA MGP_C3HHeJ_T0012250.1 MGP_C3HHeJ_G0010354.1 mouse_genomes_project 1 187163558 187163975 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022746.1 MGP_C3HHeJ_G0016417.1 mouse_genomes_project 1 164812073 164823211 - MGP_C3HHeJ_P0022746 Prdx6 protein_coding protein_coding MGP_C3HHeJ_T0022747.1 MGP_C3HHeJ_G0016417.1 mouse_genomes_project 1 164812999 164823178 - MGP_C3HHeJ_P0022747 Prdx6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022748.1 MGP_C3HHeJ_G0016417.1 mouse_genomes_project 1 164813548 164823161 - Prdx6 protein_coding processed_transcript MGP_C3HHeJ_T0022749.1 MGP_C3HHeJ_G0016417.1 mouse_genomes_project 1 164813582 164823158 - MGP_C3HHeJ_P0022749 Prdx6 protein_coding protein_coding MGP_C3HHeJ_T0022750.1 MGP_C3HHeJ_G0016417.1 mouse_genomes_project 1 164813619 164823113 - Prdx6 protein_coding processed_transcript MGP_C3HHeJ_T0022751.1 MGP_C3HHeJ_G0016417.1 mouse_genomes_project 1 164813792 164822546 - Prdx6 protein_coding processed_transcript MGP_C3HHeJ_T0022752.1 MGP_C3HHeJ_G0016417.1 mouse_genomes_project 1 164815606 164823158 - Prdx6 protein_coding processed_transcript MGP_C3HHeJ_T0022753.1 MGP_C3HHeJ_G0016417.1 mouse_genomes_project 1 164820604 164823154 - Prdx6 protein_coding retained_intron MGP_C3HHeJ_T0022754.1 MGP_C3HHeJ_G0016417.1 mouse_genomes_project 1 164821562 164823154 - Prdx6 protein_coding retained_intron MGP_C3HHeJ_T0020401.1 MGP_C3HHeJ_G0015945.1 mouse_genomes_project 1 75474317 75477041 + Ankzf1 protein_coding retained_intron MGP_C3HHeJ_T0020402.1 MGP_C3HHeJ_G0015945.1 mouse_genomes_project 1 75474326 75477491 + Ankzf1 protein_coding retained_intron MGP_C3HHeJ_T0020403.1 MGP_C3HHeJ_G0015945.1 mouse_genomes_project 1 75474326 75481344 + Ankzf1 protein_coding retained_intron MGP_C3HHeJ_T0020404.1 MGP_C3HHeJ_G0015945.1 mouse_genomes_project 1 75474326 75481344 + Ankzf1 protein_coding retained_intron MGP_C3HHeJ_T0020405.1 MGP_C3HHeJ_G0015945.1 mouse_genomes_project 1 75474326 75481344 + MGP_C3HHeJ_P0020405 Ankzf1 protein_coding protein_coding MGP_C3HHeJ_T0020406.1 MGP_C3HHeJ_G0015945.1 mouse_genomes_project 1 75474326 75481344 + MGP_C3HHeJ_P0020406 Ankzf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020407.1 MGP_C3HHeJ_G0015945.1 mouse_genomes_project 1 75474358 75477491 + MGP_C3HHeJ_P0020407 Ankzf1 protein_coding protein_coding MGP_C3HHeJ_T0020408.1 MGP_C3HHeJ_G0015945.1 mouse_genomes_project 1 75477649 75478613 + Ankzf1 protein_coding retained_intron MGP_C3HHeJ_T0021703.1 MGP_C3HHeJ_G0016218.1 mouse_genomes_project 1 133519204 133529983 - MGP_C3HHeJ_P0021703 Dyrk3 protein_coding protein_coding MGP_C3HHeJ_T0021704.1 MGP_C3HHeJ_G0016218.1 mouse_genomes_project 1 133521624 133529888 - MGP_C3HHeJ_P0021704 Dyrk3 protein_coding protein_coding MGP_C3HHeJ_T0018881.1 MGP_C3HHeJ_G0015658.1 mouse_genomes_project 1 21619490 21629974 - MGP_C3HHeJ_P0018881 Sdhaf4 protein_coding protein_coding MGP_C3HHeJ_T0018882.1 MGP_C3HHeJ_G0015658.1 mouse_genomes_project 1 21626497 21629948 - Sdhaf4 protein_coding processed_transcript MGP_C3HHeJ_T0012153.1 MGP_C3HHeJ_G0010257.1 mouse_genomes_project 1 141582869 141583092 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018667.1 MGP_C3HHeJ_G0015607.1 mouse_genomes_project 1 7487566 7876318 - MGP_C3HHeJ_P0018667 Cpa6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018668.1 MGP_C3HHeJ_G0015607.1 mouse_genomes_project 1 7487573 7876318 - MGP_C3HHeJ_P0018668 Cpa6 protein_coding protein_coding MGP_C3HHeJ_T0018669.1 MGP_C3HHeJ_G0015607.1 mouse_genomes_project 1 7629621 7636558 - Cpa6 protein_coding retained_intron MGP_C3HHeJ_T0018670.1 MGP_C3HHeJ_G0015607.1 mouse_genomes_project 1 7740214 7876278 - Cpa6 protein_coding processed_transcript MGP_C3HHeJ_T0000604.1 MGP_C3HHeJ_G0000550.1 mouse_genomes_project 1 136275083 136279029 - TEC TEC MGP_C3HHeJ_T0022138.1 MGP_C3HHeJ_G0016308.1 mouse_genomes_project 1 138868178 138869255 - MGP_C3HHeJ_P0022138 Gpr25 protein_coding protein_coding MGP_C3HHeJ_T0023075.1 MGP_C3HHeJ_G0016491.1 mouse_genomes_project 1 174026118 174047600 - MGP_C3HHeJ_P0023075 Uhmk1 protein_coding protein_coding MGP_C3HHeJ_T0023076.1 MGP_C3HHeJ_G0016491.1 mouse_genomes_project 1 174027214 174048106 - MGP_C3HHeJ_P0023076 Uhmk1 protein_coding protein_coding MGP_C3HHeJ_T0099864.1 MGP_C3HHeJ_G0038058.1 mouse_genomes_project 1 87060235 87060315 - Gm24148 snoRNA snoRNA MGP_C3HHeJ_T0011907.1 MGP_C3HHeJ_G0010011.1 mouse_genomes_project 1 44317961 44320092 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002851.1 MGP_C3HHeJ_G0002686.1 mouse_genomes_project 1 158566010 158567866 + Gm37622 antisense antisense MGP_C3HHeJ_T0002831.1 MGP_C3HHeJ_G0002670.1 mouse_genomes_project 1 137719468 137720303 + Gm15445 antisense antisense MGP_C3HHeJ_T0101085.1 MGP_C3HHeJ_G0039276.1 mouse_genomes_project 1 79399068 79399217 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0020031.1 MGP_C3HHeJ_G0015872.1 mouse_genomes_project 1 65002814 65006260 - MGP_C3HHeJ_P0020031 Crygc protein_coding protein_coding MGP_C3HHeJ_T0020032.1 MGP_C3HHeJ_G0015872.1 mouse_genomes_project 1 65002820 65006092 - MGP_C3HHeJ_P0020032 Crygc protein_coding protein_coding MGP_C3HHeJ_T0005684.1 MGP_C3HHeJ_G0004764.1 mouse_genomes_project 1 63129594 63135868 - Gm11608 lincRNA lincRNA MGP_C3HHeJ_T0005685.1 MGP_C3HHeJ_G0004764.1 mouse_genomes_project 1 63129594 63135863 - Gm11608 lincRNA lincRNA MGP_C3HHeJ_T0098603.1 MGP_C3HHeJ_G0036797.1 mouse_genomes_project 1 23138602 23138706 + Gm25294 snRNA snRNA MGP_C3HHeJ_T0098684.1 MGP_C3HHeJ_G0036878.1 mouse_genomes_project 1 197195219 197195333 - Gm26203 snRNA snRNA MGP_C3HHeJ_T0011842.1 MGP_C3HHeJ_G0009946.1 mouse_genomes_project 1 25826286 25828159 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023036.1 MGP_C3HHeJ_G0016483.1 mouse_genomes_project 1 171910915 172234807 - MGP_C3HHeJ_P0023036 Pbx1 protein_coding protein_coding MGP_C3HHeJ_T0023037.1 MGP_C3HHeJ_G0016483.1 mouse_genomes_project 1 171947363 172234592 - MGP_C3HHeJ_P0023037 Pbx1 protein_coding protein_coding MGP_C3HHeJ_T0023038.1 MGP_C3HHeJ_G0016483.1 mouse_genomes_project 1 171952153 172234445 - MGP_C3HHeJ_P0023038 Pbx1 protein_coding protein_coding MGP_C3HHeJ_T0023039.1 MGP_C3HHeJ_G0016483.1 mouse_genomes_project 1 171952193 171958486 - Pbx1 protein_coding processed_transcript MGP_C3HHeJ_T0023040.1 MGP_C3HHeJ_G0016483.1 mouse_genomes_project 1 171952555 172233229 - MGP_C3HHeJ_P0023040 Pbx1 protein_coding protein_coding MGP_C3HHeJ_T0023041.1 MGP_C3HHeJ_G0016483.1 mouse_genomes_project 1 171977404 172234638 - MGP_C3HHeJ_P0023041 Pbx1 protein_coding protein_coding MGP_C3HHeJ_T0023042.1 MGP_C3HHeJ_G0016483.1 mouse_genomes_project 1 172002243 172233385 - Pbx1 protein_coding retained_intron MGP_C3HHeJ_T0023043.1 MGP_C3HHeJ_G0016483.1 mouse_genomes_project 1 172226155 172234638 - Pbx1 protein_coding retained_intron MGP_C3HHeJ_T0098604.1 MGP_C3HHeJ_G0036798.1 mouse_genomes_project 1 29713754 29713861 - Gm23032 snRNA snRNA MGP_C3HHeJ_T0012134.1 MGP_C3HHeJ_G0010238.1 mouse_genomes_project 1 130367900 130368380 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098336.1 MGP_C3HHeJ_G0036547.1 mouse_genomes_project 1 188532849 188536464 + sense_intronic sense_intronic MGP_C3HHeJ_T0002778.1 MGP_C3HHeJ_G0002630.1 mouse_genomes_project 1 82916803 82919640 - antisense antisense MGP_C3HHeJ_T0020033.1 MGP_C3HHeJ_G0015873.1 mouse_genomes_project 1 65013718 65015788 - MGP_C3HHeJ_P0020033 Crygb protein_coding protein_coding MGP_C3HHeJ_T0019127.1 MGP_C3HHeJ_G0015703.1 mouse_genomes_project 1 35053401 35080277 + MGP_C3HHeJ_P0019127 Zap70 protein_coding protein_coding MGP_C3HHeJ_T0019128.1 MGP_C3HHeJ_G0015703.1 mouse_genomes_project 1 35058536 35062642 + MGP_C3HHeJ_P0019128 Zap70 protein_coding protein_coding MGP_C3HHeJ_T0019129.1 MGP_C3HHeJ_G0015703.1 mouse_genomes_project 1 35062566 35063950 + Zap70 protein_coding retained_intron MGP_C3HHeJ_T0019130.1 MGP_C3HHeJ_G0015703.1 mouse_genomes_project 1 35070523 35080274 + Zap70 protein_coding retained_intron MGP_C3HHeJ_T0002773.1 MGP_C3HHeJ_G0002626.1 mouse_genomes_project 1 75560491 75563541 + Gm28902 antisense antisense MGP_C3HHeJ_T0005733.1 MGP_C3HHeJ_G0004799.1 mouse_genomes_project 1 80659983 80664421 + 2310015K22Rik lincRNA lincRNA MGP_C3HHeJ_T0022392.1 MGP_C3HHeJ_G0016357.1 mouse_genomes_project 1 155971647 155980734 + MGP_C3HHeJ_P0022392 Arpc5 protein_coding protein_coding MGP_C3HHeJ_T0022393.1 MGP_C3HHeJ_G0016357.1 mouse_genomes_project 1 155971647 155980734 + MGP_C3HHeJ_P0022393 Arpc5 protein_coding protein_coding MGP_C3HHeJ_T0022394.1 MGP_C3HHeJ_G0016357.1 mouse_genomes_project 1 155973635 155979532 + Arpc5 protein_coding retained_intron MGP_C3HHeJ_T0098675.1 MGP_C3HHeJ_G0036869.1 mouse_genomes_project 1 180500255 180500362 + Gm23805 snRNA snRNA MGP_C3HHeJ_T0000705.1 MGP_C3HHeJ_G0000650.1 mouse_genomes_project 1 170165201 170166107 - TEC TEC MGP_C3HHeJ_T0000698.1 MGP_C3HHeJ_G0000643.1 mouse_genomes_project 1 168226479 168229569 + TEC TEC MGP_C3HHeJ_T0101543.1 MGP_C3HHeJ_G0039509.1 mouse_genomes_project 1 18760282 18761178 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005830.1 MGP_C3HHeJ_G0004880.1 mouse_genomes_project 1 134781927 134789222 + F730311O21Rik lincRNA lincRNA MGP_C3HHeJ_T0005769.1 MGP_C3HHeJ_G0004832.1 mouse_genomes_project 1 93917178 93919714 - lincRNA lincRNA MGP_C3HHeJ_T0002935.1 MGP_C3HHeJ_G0002752.1 mouse_genomes_project 1 197520220 197535657 + Gm10516 antisense antisense MGP_C3HHeJ_T0002936.1 MGP_C3HHeJ_G0002752.1 mouse_genomes_project 1 197520664 197528599 + Gm10516 antisense antisense MGP_C3HHeJ_T0005589.1 MGP_C3HHeJ_G0004696.1 mouse_genomes_project 1 20882322 20882666 + Gm29107 lincRNA lincRNA MGP_C3HHeJ_T0023129.1 MGP_C3HHeJ_G0016507.1 mouse_genomes_project 1 175061446 175072955 + MGP_C3HHeJ_P0023129 Mpz protein_coding protein_coding MGP_C3HHeJ_T0023130.1 MGP_C3HHeJ_G0016507.1 mouse_genomes_project 1 175066243 175071229 + MGP_C3HHeJ_P0023130 Mpz protein_coding protein_coding MGP_C3HHeJ_T0023131.1 MGP_C3HHeJ_G0016507.1 mouse_genomes_project 1 175070315 175070952 + Mpz protein_coding processed_transcript MGP_C3HHeJ_T0023132.1 MGP_C3HHeJ_G0016507.1 mouse_genomes_project 1 175070424 175070967 + Mpz protein_coding processed_transcript MGP_C3HHeJ_T0023283.1 MGP_C3HHeJ_G0016540.1 mouse_genomes_project 1 176365480 176382301 - MGP_C3HHeJ_P0023283 Ncstn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023284.1 MGP_C3HHeJ_G0016540.1 mouse_genomes_project 1 176365480 176382301 - MGP_C3HHeJ_P0023284 Ncstn protein_coding protein_coding MGP_C3HHeJ_T0023285.1 MGP_C3HHeJ_G0016540.1 mouse_genomes_project 1 176365480 176382301 - MGP_C3HHeJ_P0023285 Ncstn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023286.1 MGP_C3HHeJ_G0016540.1 mouse_genomes_project 1 176366168 176367533 - Ncstn protein_coding retained_intron MGP_C3HHeJ_T0023287.1 MGP_C3HHeJ_G0016540.1 mouse_genomes_project 1 176367338 176370734 - Ncstn protein_coding retained_intron MGP_C3HHeJ_T0023288.1 MGP_C3HHeJ_G0016540.1 mouse_genomes_project 1 176380194 176382301 - Ncstn protein_coding retained_intron MGP_C3HHeJ_T0021990.1 MGP_C3HHeJ_G0016280.1 mouse_genomes_project 1 137089571 137172478 + MGP_C3HHeJ_P0021990 Kdm5b protein_coding protein_coding MGP_C3HHeJ_T0021991.1 MGP_C3HHeJ_G0016280.1 mouse_genomes_project 1 137089592 137168748 + MGP_C3HHeJ_P0021991 Kdm5b protein_coding protein_coding MGP_C3HHeJ_T0021992.1 MGP_C3HHeJ_G0016280.1 mouse_genomes_project 1 137089607 137143989 + Kdm5b protein_coding retained_intron MGP_C3HHeJ_T0021993.1 MGP_C3HHeJ_G0016280.1 mouse_genomes_project 1 137089739 137170106 + MGP_C3HHeJ_P0021993 Kdm5b protein_coding unknown_likely_coding MGP_C3HHeJ_T0021994.1 MGP_C3HHeJ_G0016280.1 mouse_genomes_project 1 137122145 137124859 + Kdm5b protein_coding retained_intron MGP_C3HHeJ_T0021995.1 MGP_C3HHeJ_G0016280.1 mouse_genomes_project 1 137159095 137162317 + Kdm5b protein_coding retained_intron MGP_C3HHeJ_T0021996.1 MGP_C3HHeJ_G0016280.1 mouse_genomes_project 1 137160014 137164417 + Kdm5b protein_coding retained_intron MGP_C3HHeJ_T0021326.1 MGP_C3HHeJ_G0016132.1 mouse_genomes_project 1 106891085 106980066 - MGP_C3HHeJ_P0021326 Rnf152 protein_coding protein_coding MGP_C3HHeJ_T0021327.1 MGP_C3HHeJ_G0016132.1 mouse_genomes_project 1 106891088 106980104 - MGP_C3HHeJ_P0021327 Rnf152 protein_coding protein_coding MGP_C3HHeJ_T0002822.1 MGP_C3HHeJ_G0002665.1 mouse_genomes_project 1 135511069 135529408 - Gm28609 antisense antisense MGP_C3HHeJ_T0000761.1 MGP_C3HHeJ_G0000704.1 mouse_genomes_project 1 194934521 194935406 - TEC TEC MGP_C3HHeJ_T0000560.1 MGP_C3HHeJ_G0000507.1 mouse_genomes_project 1 121810251 121818414 - TEC TEC MGP_C3HHeJ_T0012112.1 MGP_C3HHeJ_G0010216.1 mouse_genomes_project 1 121522323 121522716 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019259.1 MGP_C3HHeJ_G0015726.1 mouse_genomes_project 1 37600963 37698017 + MGP_C3HHeJ_P0019259 Npas2 protein_coding protein_coding MGP_C3HHeJ_T0019260.1 MGP_C3HHeJ_G0015726.1 mouse_genomes_project 1 37601444 37780246 + MGP_C3HHeJ_P0019260 Npas2 protein_coding protein_coding MGP_C3HHeJ_T0019261.1 MGP_C3HHeJ_G0015726.1 mouse_genomes_project 1 37757351 37761474 + Npas2 protein_coding processed_transcript MGP_C3HHeJ_T0011981.1 MGP_C3HHeJ_G0010085.1 mouse_genomes_project 1 63251449 63252029 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009462.1 MGP_C3HHeJ_G0007595.1 mouse_genomes_project 1 172295836 172295956 + Mir6348 miRNA miRNA MGP_C3HHeJ_T0000424.1 MGP_C3HHeJ_G0000371.1 mouse_genomes_project 1 37844287 37845172 - TEC TEC MGP_C3HHeJ_T0000369.1 MGP_C3HHeJ_G0000319.1 mouse_genomes_project 1 20842344 20843067 - TEC TEC MGP_C3HHeJ_T0000370.1 MGP_C3HHeJ_G0000319.1 mouse_genomes_project 1 20842646 20843066 - TEC TEC MGP_C3HHeJ_T0005838.1 MGP_C3HHeJ_G0004888.1 mouse_genomes_project 1 138861151 138864330 - Gm37552 lincRNA lincRNA MGP_C3HHeJ_T0000674.1 MGP_C3HHeJ_G0000619.1 mouse_genomes_project 1 161977565 161980652 - TEC TEC MGP_C3HHeJ_T0099873.1 MGP_C3HHeJ_G0038067.1 mouse_genomes_project 1 104797549 104797691 - Gm23965 snoRNA snoRNA MGP_C3HHeJ_T0012088.1 MGP_C3HHeJ_G0010192.1 mouse_genomes_project 1 111408002 111408189 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022280.1 MGP_C3HHeJ_G0016337.1 mouse_genomes_project 1 147691447 147714829 - MGP_C3HHeJ_P0022280 Rgs18 protein_coding protein_coding MGP_C3HHeJ_T0011863.1 MGP_C3HHeJ_G0009967.1 mouse_genomes_project 1 31374199 31375892 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000739.1 MGP_C3HHeJ_G0000683.1 mouse_genomes_project 1 186756377 186760190 - TEC TEC MGP_C3HHeJ_T0005881.1 MGP_C3HHeJ_G0004921.1 mouse_genomes_project 1 162403396 162416146 - 1600012P17Rik lincRNA lincRNA MGP_C3HHeJ_T0005882.1 MGP_C3HHeJ_G0004921.1 mouse_genomes_project 1 162405303 162415754 - 1600012P17Rik lincRNA lincRNA MGP_C3HHeJ_T0098592.1 MGP_C3HHeJ_G0036786.1 mouse_genomes_project 1 147659 147769 + Gm26206 snRNA snRNA MGP_C3HHeJ_T0000771.1 MGP_C3HHeJ_G0000713.1 mouse_genomes_project 1 198797645 198798273 + TEC TEC MGP_C3HHeJ_T0019237.1 MGP_C3HHeJ_G0015721.1 mouse_genomes_project 1 36550504 37019433 - MGP_C3HHeJ_P0019237 Aff3 protein_coding protein_coding MGP_C3HHeJ_T0019238.1 MGP_C3HHeJ_G0015721.1 mouse_genomes_project 1 36550505 37057475 - MGP_C3HHeJ_P0019238 Aff3 protein_coding protein_coding MGP_C3HHeJ_T0019239.1 MGP_C3HHeJ_G0015721.1 mouse_genomes_project 1 36552633 37019389 - MGP_C3HHeJ_P0019239 Aff3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0019240.1 MGP_C3HHeJ_G0015721.1 mouse_genomes_project 1 36554475 36570781 - Aff3 protein_coding processed_transcript MGP_C3HHeJ_T0019241.1 MGP_C3HHeJ_G0015721.1 mouse_genomes_project 1 36717367 37057475 - Aff3 protein_coding processed_transcript MGP_C3HHeJ_T0019242.1 MGP_C3HHeJ_G0015721.1 mouse_genomes_project 1 36925110 37057475 - MGP_C3HHeJ_P0019242 Aff3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0101562.1 MGP_C3HHeJ_G0039528.1 mouse_genomes_project 1 89048149 89048399 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099833.1 MGP_C3HHeJ_G0038027.1 mouse_genomes_project 1 22188009 22188146 - Gm26418 snoRNA snoRNA MGP_C3HHeJ_T0002819.1 MGP_C3HHeJ_G0002662.1 mouse_genomes_project 1 134569942 134573239 + Gm29629 antisense antisense MGP_C3HHeJ_T0019037.1 MGP_C3HHeJ_G0015688.1 mouse_genomes_project 1 34316725 34357738 + MGP_C3HHeJ_P0019037 Hs6st1 protein_coding protein_coding MGP_C3HHeJ_T0019038.1 MGP_C3HHeJ_G0015688.1 mouse_genomes_project 1 34352014 34356268 + Hs6st1 protein_coding retained_intron MGP_C3HHeJ_T0000555.1 MGP_C3HHeJ_G0000502.1 mouse_genomes_project 1 110196925 110199174 + TEC TEC MGP_C3HHeJ_T0012197.1 MGP_C3HHeJ_G0010301.1 mouse_genomes_project 1 159545764 159545964 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005597.1 MGP_C3HHeJ_G0004703.1 mouse_genomes_project 1 29059265 29061814 + Gm28644 lincRNA lincRNA MGP_C3HHeJ_T0012139.1 MGP_C3HHeJ_G0010243.1 mouse_genomes_project 1 133615231 133616444 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021196.1 MGP_C3HHeJ_G0016105.1 mouse_genomes_project 1 94482123 94490758 - Pask protein_coding retained_intron MGP_C3HHeJ_T0021197.1 MGP_C3HHeJ_G0016105.1 mouse_genomes_project 1 94482131 94516134 - MGP_C3HHeJ_P0021197 Pask protein_coding protein_coding MGP_C3HHeJ_T0021198.1 MGP_C3HHeJ_G0016105.1 mouse_genomes_project 1 94483191 94486503 - Pask protein_coding retained_intron MGP_C3HHeJ_T0021199.1 MGP_C3HHeJ_G0016105.1 mouse_genomes_project 1 94483438 94484698 - Pask protein_coding retained_intron MGP_C3HHeJ_T0021200.1 MGP_C3HHeJ_G0016105.1 mouse_genomes_project 1 94491172 94516810 - Pask protein_coding retained_intron MGP_C3HHeJ_T0021201.1 MGP_C3HHeJ_G0016105.1 mouse_genomes_project 1 94510787 94516827 - MGP_C3HHeJ_P0021201 Pask protein_coding protein_coding MGP_C3HHeJ_T0021696.1 MGP_C3HHeJ_G0016215.1 mouse_genomes_project 1 133316713 133324169 - MGP_C3HHeJ_P0021696 Il19 protein_coding protein_coding MGP_C3HHeJ_T0021697.1 MGP_C3HHeJ_G0016215.1 mouse_genomes_project 1 133316715 133323309 - MGP_C3HHeJ_P0021697 Il19 protein_coding protein_coding MGP_C3HHeJ_T0021698.1 MGP_C3HHeJ_G0016215.1 mouse_genomes_project 1 133316873 133324183 - MGP_C3HHeJ_P0021698 Il19 protein_coding protein_coding MGP_C3HHeJ_T0021699.1 MGP_C3HHeJ_G0016215.1 mouse_genomes_project 1 133316915 133324141 - MGP_C3HHeJ_P0021699 Il19 protein_coding protein_coding MGP_C3HHeJ_T0012130.1 MGP_C3HHeJ_G0010234.1 mouse_genomes_project 1 125978298 125979180 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002748.1 MGP_C3HHeJ_G0002610.1 mouse_genomes_project 1 58889326 58906607 + Gm29017 antisense antisense MGP_C3HHeJ_T0022145.1 MGP_C3HHeJ_G0016310.1 mouse_genomes_project 1 139031491 139034013 + Ddx59 protein_coding retained_intron MGP_C3HHeJ_T0022146.1 MGP_C3HHeJ_G0016310.1 mouse_genomes_project 1 139031491 139063976 + MGP_C3HHeJ_P0022146 Ddx59 protein_coding protein_coding MGP_C3HHeJ_T0022147.1 MGP_C3HHeJ_G0016310.1 mouse_genomes_project 1 139054000 139056243 + Ddx59 protein_coding processed_transcript MGP_C3HHeJ_T0022148.1 MGP_C3HHeJ_G0016310.1 mouse_genomes_project 1 139056219 139057884 + Ddx59 protein_coding retained_intron MGP_C3HHeJ_T0000586.1 MGP_C3HHeJ_G0000533.1 mouse_genomes_project 1 130402368 130403683 + TEC TEC MGP_C3HHeJ_T0012082.1 MGP_C3HHeJ_G0010186.1 mouse_genomes_project 1 109724077 109724676 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000475.1 MGP_C3HHeJ_G0000422.1 mouse_genomes_project 1 66806910 66811613 - TEC TEC MGP_C3HHeJ_T0019493.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51359020 51396036 + MGP_C3HHeJ_P0019493 Stat1 protein_coding protein_coding MGP_C3HHeJ_T0019494.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51359035 51402478 + MGP_C3HHeJ_P0019494 Stat1 protein_coding protein_coding MGP_C3HHeJ_T0019495.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51359070 51396036 + MGP_C3HHeJ_P0019495 Stat1 protein_coding protein_coding MGP_C3HHeJ_T0019496.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51359072 51401620 + MGP_C3HHeJ_P0019496 Stat1 protein_coding protein_coding MGP_C3HHeJ_T0019497.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51359078 51373261 + MGP_C3HHeJ_P0019497 Stat1 protein_coding protein_coding MGP_C3HHeJ_T0019498.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51359129 51395955 + MGP_C3HHeJ_P0019498 Stat1 protein_coding protein_coding MGP_C3HHeJ_T0019499.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51359139 51359975 + Stat1 protein_coding retained_intron MGP_C3HHeJ_T0019500.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51359152 51378480 + Stat1 protein_coding retained_intron MGP_C3HHeJ_T0019501.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51359204 51401343 + MGP_C3HHeJ_P0019501 Stat1 protein_coding protein_coding MGP_C3HHeJ_T0019502.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51390731 51393027 + Stat1 protein_coding retained_intron MGP_C3HHeJ_T0019503.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51390885 51402476 + MGP_C3HHeJ_P0019503 Stat1 protein_coding protein_coding MGP_C3HHeJ_T0019504.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51392880 51400173 + MGP_C3HHeJ_P0019504 Stat1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011987.1 MGP_C3HHeJ_G0010091.1 mouse_genomes_project 1 64957944 64958597 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005643.1 MGP_C3HHeJ_G0004732.1 mouse_genomes_project 1 45951288 45952236 - Gm28151 lincRNA lincRNA MGP_C3HHeJ_T0012244.1 MGP_C3HHeJ_G0010348.1 mouse_genomes_project 1 185710955 185711433 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099879.1 MGP_C3HHeJ_G0038073.1 mouse_genomes_project 1 120446512 120446643 - Gm26080 snoRNA snoRNA MGP_C3HHeJ_T0101565.1 MGP_C3HHeJ_G0039531.1 mouse_genomes_project 1 89085631 89086489 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011898.1 MGP_C3HHeJ_G0010002.1 mouse_genomes_project 1 42887060 42894773 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000344.1 MGP_C3HHeJ_G0000294.1 mouse_genomes_project 1 8514256 8517307 - TEC TEC MGP_C3HHeJ_T0020219.1 MGP_C3HHeJ_G0015909.1 mouse_genomes_project 1 74421212 74447055 + MGP_C3HHeJ_P0020219 Rufy4 protein_coding protein_coding MGP_C3HHeJ_T0020220.1 MGP_C3HHeJ_G0015909.1 mouse_genomes_project 1 74421250 74446605 + MGP_C3HHeJ_P0020220 Rufy4 protein_coding protein_coding MGP_C3HHeJ_T0023423.1 MGP_C3HHeJ_G0016582.1 mouse_genomes_project 1 178628609 178629548 + MGP_C3HHeJ_P0023423 Olfr432 protein_coding protein_coding MGP_C3HHeJ_T0016778.1 MGP_C3HHeJ_G0014862.1 mouse_genomes_project 1 75453096 75467324 - Gm29253 processed_transcript processed_transcript MGP_C3HHeJ_T0002731.1 MGP_C3HHeJ_G0002597.1 mouse_genomes_project 1 41675295 41676163 + Gm28782 antisense antisense MGP_C3HHeJ_T0020983.1 MGP_C3HHeJ_G0016059.1 mouse_genomes_project 1 91059515 91173704 - MGP_C3HHeJ_P0020983 Iqca protein_coding protein_coding MGP_C3HHeJ_T0020984.1 MGP_C3HHeJ_G0016059.1 mouse_genomes_project 1 91059518 91108920 - Iqca protein_coding processed_transcript MGP_C3HHeJ_T0020985.1 MGP_C3HHeJ_G0016059.1 mouse_genomes_project 1 91060009 91173478 - MGP_C3HHeJ_P0020985 Iqca protein_coding unknown_likely_coding MGP_C3HHeJ_T0020986.1 MGP_C3HHeJ_G0016059.1 mouse_genomes_project 1 91076593 91085006 - MGP_C3HHeJ_P0020986 Iqca protein_coding protein_coding MGP_C3HHeJ_T0020987.1 MGP_C3HHeJ_G0016059.1 mouse_genomes_project 1 91101111 91108920 - Iqca protein_coding processed_transcript MGP_C3HHeJ_T0020988.1 MGP_C3HHeJ_G0016059.1 mouse_genomes_project 1 91146763 91173704 - Iqca protein_coding processed_transcript MGP_C3HHeJ_T0011167.1 MGP_C3HHeJ_G0009300.1 mouse_genomes_project 1 195835050 195835363 - Gm23153 misc_RNA misc_RNA MGP_C3HHeJ_T0000492.1 MGP_C3HHeJ_G0000439.1 mouse_genomes_project 1 77484558 77488335 - TEC TEC MGP_C3HHeJ_T0005727.1 MGP_C3HHeJ_G0004795.1 mouse_genomes_project 1 79024311 79028968 + Gm29611 lincRNA lincRNA MGP_C3HHeJ_T0000655.1 MGP_C3HHeJ_G0000600.1 mouse_genomes_project 1 156691331 156692151 + TEC TEC MGP_C3HHeJ_T0099884.1 MGP_C3HHeJ_G0038078.1 mouse_genomes_project 1 135271780 135271901 - Gm22609 snoRNA snoRNA MGP_C3HHeJ_T0024093.1 MGP_C3HHeJ_G0016724.1 mouse_genomes_project 1 198695826 198696887 - MGP_C3HHeJ_P0024093 G0s2 protein_coding protein_coding MGP_C3HHeJ_T0000320.1 MGP_C3HHeJ_G0000270.1 mouse_genomes_project 1 112363 113433 + TEC TEC MGP_C3HHeJ_T0005889.1 MGP_C3HHeJ_G0004926.1 mouse_genomes_project 1 164386812 164387276 + Gm38060 lincRNA lincRNA MGP_C3HHeJ_T0023440.1 MGP_C3HHeJ_G0016595.1 mouse_genomes_project 1 179074764 179414964 + MGP_C3HHeJ_P0023440 Fmn2 protein_coding protein_coding MGP_C3HHeJ_T0023441.1 MGP_C3HHeJ_G0016595.1 mouse_genomes_project 1 179111211 179158904 + Fmn2 protein_coding processed_transcript MGP_C3HHeJ_T0023442.1 MGP_C3HHeJ_G0016595.1 mouse_genomes_project 1 179191263 179197762 + Fmn2 protein_coding processed_transcript MGP_C3HHeJ_T0023443.1 MGP_C3HHeJ_G0016595.1 mouse_genomes_project 1 179191264 179281932 + MGP_C3HHeJ_P0023443 Fmn2 protein_coding protein_coding MGP_C3HHeJ_T0023444.1 MGP_C3HHeJ_G0016595.1 mouse_genomes_project 1 179194016 179287802 + Fmn2 protein_coding retained_intron MGP_C3HHeJ_T0023445.1 MGP_C3HHeJ_G0016595.1 mouse_genomes_project 1 179296252 179413503 + Fmn2 protein_coding processed_transcript MGP_C3HHeJ_T0000428.1 MGP_C3HHeJ_G0000375.1 mouse_genomes_project 1 41085117 41088966 + TEC TEC MGP_C3HHeJ_T0020937.1 MGP_C3HHeJ_G0016040.1 mouse_genomes_project 1 88942344 89122337 + MGP_C3HHeJ_P0020937 Ugt1a9 protein_coding protein_coding MGP_C3HHeJ_T0019262.1 MGP_C3HHeJ_G0015727.1 mouse_genomes_project 1 37788217 37791695 + MGP_C3HHeJ_P0019262 Rpl31 protein_coding protein_coding MGP_C3HHeJ_T0019263.1 MGP_C3HHeJ_G0015727.1 mouse_genomes_project 1 37788488 37791662 + MGP_C3HHeJ_P0019263 Rpl31 protein_coding protein_coding MGP_C3HHeJ_T0019264.1 MGP_C3HHeJ_G0015727.1 mouse_genomes_project 1 37790177 37791695 + Rpl31 protein_coding retained_intron MGP_C3HHeJ_T0005691.1 MGP_C3HHeJ_G0004770.1 mouse_genomes_project 1 67243341 67338329 + Gm15668 lincRNA lincRNA MGP_C3HHeJ_T0101341.1 MGP_C3HHeJ_G0039417.1 mouse_genomes_project 1 177818018 177822630 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0023549.1 MGP_C3HHeJ_G0016619.1 mouse_genomes_project 1 183854316 184444759 - MGP_C3HHeJ_P0023549 Smyd3 protein_coding protein_coding MGP_C3HHeJ_T0023550.1 MGP_C3HHeJ_G0016619.1 mouse_genomes_project 1 183857402 184164017 - Smyd3 protein_coding processed_transcript MGP_C3HHeJ_T0023551.1 MGP_C3HHeJ_G0016619.1 mouse_genomes_project 1 183857507 184295154 - Smyd3 protein_coding processed_transcript MGP_C3HHeJ_T0023552.1 MGP_C3HHeJ_G0016619.1 mouse_genomes_project 1 183860735 183893732 - Smyd3 protein_coding processed_transcript MGP_C3HHeJ_T0023553.1 MGP_C3HHeJ_G0016619.1 mouse_genomes_project 1 184299414 184328187 - Smyd3 protein_coding processed_transcript MGP_C3HHeJ_T0023554.1 MGP_C3HHeJ_G0016619.1 mouse_genomes_project 1 184316969 184444766 - MGP_C3HHeJ_P0023554 Smyd3 protein_coding protein_coding MGP_C3HHeJ_T0023555.1 MGP_C3HHeJ_G0016619.1 mouse_genomes_project 1 184433309 184444730 - MGP_C3HHeJ_P0023555 Smyd3 protein_coding protein_coding MGP_C3HHeJ_T0099857.1 MGP_C3HHeJ_G0038051.1 mouse_genomes_project 1 66283266 66283403 + Gm24729 snoRNA snoRNA MGP_C3HHeJ_T0023357.1 MGP_C3HHeJ_G0016554.1 mouse_genomes_project 1 176815431 176822223 + Tagln2 protein_coding retained_intron MGP_C3HHeJ_T0023358.1 MGP_C3HHeJ_G0016554.1 mouse_genomes_project 1 176815431 176823667 + MGP_C3HHeJ_P0023358 Tagln2 protein_coding protein_coding MGP_C3HHeJ_T0023359.1 MGP_C3HHeJ_G0016554.1 mouse_genomes_project 1 176815629 176822141 + MGP_C3HHeJ_P0023359 Tagln2 protein_coding protein_coding MGP_C3HHeJ_T0023360.1 MGP_C3HHeJ_G0016554.1 mouse_genomes_project 1 176816653 176823042 + MGP_C3HHeJ_P0023360 Tagln2 protein_coding protein_coding MGP_C3HHeJ_T0019788.1 MGP_C3HHeJ_G0015829.1 mouse_genomes_project 1 58642220 58681996 - MGP_C3HHeJ_P0019788 Trak2 protein_coding protein_coding MGP_C3HHeJ_T0019789.1 MGP_C3HHeJ_G0015829.1 mouse_genomes_project 1 58645425 58648897 - Trak2 protein_coding retained_intron MGP_C3HHeJ_T0019790.1 MGP_C3HHeJ_G0015829.1 mouse_genomes_project 1 58661586 58663388 - Trak2 protein_coding processed_transcript MGP_C3HHeJ_T0019791.1 MGP_C3HHeJ_G0015829.1 mouse_genomes_project 1 58667631 58709087 - MGP_C3HHeJ_P0019791 Trak2 protein_coding protein_coding MGP_C3HHeJ_T0019792.1 MGP_C3HHeJ_G0015829.1 mouse_genomes_project 1 58681560 58709088 - Trak2 protein_coding retained_intron MGP_C3HHeJ_T0012076.1 MGP_C3HHeJ_G0010180.1 mouse_genomes_project 1 107211413 107211674 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002905.1 MGP_C3HHeJ_G0002730.1 mouse_genomes_project 1 187599266 187608260 + Gm37885 antisense antisense MGP_C3HHeJ_T0002906.1 MGP_C3HHeJ_G0002730.1 mouse_genomes_project 1 187605815 187607388 + Gm37885 antisense antisense MGP_C3HHeJ_T0020194.1 MGP_C3HHeJ_G0015906.1 mouse_genomes_project 1 73117884 73136568 - MGP_C3HHeJ_P0020194 Igfbp5 protein_coding protein_coding MGP_C3HHeJ_T0020195.1 MGP_C3HHeJ_G0015906.1 mouse_genomes_project 1 73118017 73135946 - Igfbp5 protein_coding processed_transcript MGP_C3HHeJ_T0098565.1 MGP_C3HHeJ_G0036764.1 mouse_genomes_project 1 20629397 20821665 - Gm29506 sense_overlapping sense_overlapping MGP_C3HHeJ_T0000408.1 MGP_C3HHeJ_G0000355.1 mouse_genomes_project 1 32096146 32098528 + TEC TEC MGP_C3HHeJ_T0009423.1 MGP_C3HHeJ_G0007556.1 mouse_genomes_project 1 85300101 85300178 + Mir5126 miRNA miRNA MGP_C3HHeJ_T0005586.1 MGP_C3HHeJ_G0004693.1 mouse_genomes_project 1 18360666 18362496 - 6720483E21Rik lincRNA lincRNA MGP_C3HHeJ_T0000765.1 MGP_C3HHeJ_G0000708.1 mouse_genomes_project 1 197006529 197007158 + TEC TEC MGP_C3HHeJ_T0018813.1 MGP_C3HHeJ_G0015639.1 mouse_genomes_project 1 16685453 16716907 + MGP_C3HHeJ_P0018813 Tfap2b protein_coding protein_coding MGP_C3HHeJ_T0018814.1 MGP_C3HHeJ_G0015639.1 mouse_genomes_project 1 16685489 16716414 + MGP_C3HHeJ_P0018814 Tfap2b protein_coding protein_coding MGP_C3HHeJ_T0018815.1 MGP_C3HHeJ_G0015639.1 mouse_genomes_project 1 16688552 16712958 + MGP_C3HHeJ_P0018815 Tfap2b protein_coding protein_coding MGP_C3HHeJ_T0018816.1 MGP_C3HHeJ_G0015639.1 mouse_genomes_project 1 16688796 16690868 + Tfap2b protein_coding retained_intron MGP_C3HHeJ_T0018817.1 MGP_C3HHeJ_G0015639.1 mouse_genomes_project 1 16690304 16695687 + Tfap2b protein_coding retained_intron MGP_C3HHeJ_T0012040.1 MGP_C3HHeJ_G0010144.1 mouse_genomes_project 1 89922735 89923990 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005842.1 MGP_C3HHeJ_G0004892.1 mouse_genomes_project 1 139257227 139259780 - Platr23 lincRNA lincRNA MGP_C3HHeJ_T0098331.1 MGP_C3HHeJ_G0036542.1 mouse_genomes_project 1 156086922 156088701 - Gm28791 sense_intronic sense_intronic MGP_C3HHeJ_T0000568.1 MGP_C3HHeJ_G0000515.1 mouse_genomes_project 1 125519165 125522173 - TEC TEC MGP_C3HHeJ_T0019681.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57368228 57483677 + MGP_C3HHeJ_P0019681 Spats2l protein_coding protein_coding MGP_C3HHeJ_T0019682.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57368315 57477632 + Spats2l protein_coding retained_intron MGP_C3HHeJ_T0019683.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57368367 57500018 + MGP_C3HHeJ_P0019683 Spats2l protein_coding protein_coding MGP_C3HHeJ_T0019684.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57368485 57394499 + Spats2l protein_coding retained_intron MGP_C3HHeJ_T0019685.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57368666 57483745 + MGP_C3HHeJ_P0019685 Spats2l protein_coding protein_coding MGP_C3HHeJ_T0019686.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57368810 57535917 + MGP_C3HHeJ_P0019686 Spats2l protein_coding protein_coding MGP_C3HHeJ_T0019687.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57368956 57455146 + Spats2l protein_coding retained_intron MGP_C3HHeJ_T0019688.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57368978 57427943 + Spats2l protein_coding retained_intron MGP_C3HHeJ_T0019689.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57368983 57393641 + Spats2l protein_coding retained_intron MGP_C3HHeJ_T0019690.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57391732 57544355 + MGP_C3HHeJ_P0019690 Spats2l protein_coding protein_coding MGP_C3HHeJ_T0019691.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57499979 57538270 + Spats2l protein_coding retained_intron MGP_C3HHeJ_T0021736.1 MGP_C3HHeJ_G0016224.1 mouse_genomes_project 1 133999554 134014260 + MGP_C3HHeJ_P0021736 Avpr1b protein_coding protein_coding MGP_C3HHeJ_T0021737.1 MGP_C3HHeJ_G0016224.1 mouse_genomes_project 1 134000038 134012014 + MGP_C3HHeJ_P0021737 Avpr1b protein_coding protein_coding MGP_C3HHeJ_T0098673.1 MGP_C3HHeJ_G0036867.1 mouse_genomes_project 1 177174517 177174614 - Gm24817 snRNA snRNA MGP_C3HHeJ_T0101577.1 MGP_C3HHeJ_G0039543.1 mouse_genomes_project 1 108717036 108722226 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0002689.1 MGP_C3HHeJ_G0002565.1 mouse_genomes_project 1 10616978 10627384 + Gm29570 antisense antisense MGP_C3HHeJ_T0021028.1 MGP_C3HHeJ_G0016067.1 mouse_genomes_project 1 92204988 92207658 + Rbm44 protein_coding retained_intron MGP_C3HHeJ_T0021029.1 MGP_C3HHeJ_G0016067.1 mouse_genomes_project 1 92205000 92212622 + MGP_C3HHeJ_P0021029 Rbm44 protein_coding protein_coding MGP_C3HHeJ_T0021030.1 MGP_C3HHeJ_G0016067.1 mouse_genomes_project 1 92205002 92231568 + MGP_C3HHeJ_P0021030 Rbm44 protein_coding protein_coding MGP_C3HHeJ_T0021031.1 MGP_C3HHeJ_G0016067.1 mouse_genomes_project 1 92229401 92231066 + Rbm44 protein_coding retained_intron MGP_C3HHeJ_T0023697.1 MGP_C3HHeJ_G0016647.1 mouse_genomes_project 1 186401826 186515030 + MGP_C3HHeJ_P0023697 Cnih3 protein_coding protein_coding MGP_C3HHeJ_T0023698.1 MGP_C3HHeJ_G0016647.1 mouse_genomes_project 1 186401828 186515762 + MGP_C3HHeJ_P0023698 Cnih3 protein_coding protein_coding MGP_C3HHeJ_T0023699.1 MGP_C3HHeJ_G0016647.1 mouse_genomes_project 1 186402396 186514408 + MGP_C3HHeJ_P0023699 Cnih3 protein_coding protein_coding MGP_C3HHeJ_T0019419.1 MGP_C3HHeJ_G0015761.1 mouse_genomes_project 1 42878947 42900530 - MGP_C3HHeJ_P0019419 Mettl21e protein_coding protein_coding MGP_C3HHeJ_T0019420.1 MGP_C3HHeJ_G0015761.1 mouse_genomes_project 1 42881322 42900482 - Mettl21e protein_coding retained_intron MGP_C3HHeJ_T0009396.1 MGP_C3HHeJ_G0007529.1 mouse_genomes_project 1 41655929 41656014 + Gm24001 miRNA miRNA MGP_C3HHeJ_T0020804.1 MGP_C3HHeJ_G0016016.1 mouse_genomes_project 1 87281305 87323233 - Pde6d protein_coding retained_intron MGP_C3HHeJ_T0020805.1 MGP_C3HHeJ_G0016016.1 mouse_genomes_project 1 87281305 87323233 - MGP_C3HHeJ_P0020805 Pde6d protein_coding protein_coding MGP_C3HHeJ_T0020806.1 MGP_C3HHeJ_G0016016.1 mouse_genomes_project 1 87281333 87323315 - MGP_C3HHeJ_P0020806 Pde6d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020807.1 MGP_C3HHeJ_G0016016.1 mouse_genomes_project 1 87281831 87323203 - Pde6d protein_coding processed_transcript MGP_C3HHeJ_T0020808.1 MGP_C3HHeJ_G0016016.1 mouse_genomes_project 1 87283703 87323233 - MGP_C3HHeJ_P0020808 Pde6d protein_coding protein_coding MGP_C3HHeJ_T0022879.1 MGP_C3HHeJ_G0016447.1 mouse_genomes_project 1 167889766 167906107 + MGP_C3HHeJ_P0022879 Slc19a2 protein_coding protein_coding MGP_C3HHeJ_T0022880.1 MGP_C3HHeJ_G0016447.1 mouse_genomes_project 1 167889775 167906091 + MGP_C3HHeJ_P0022880 Slc19a2 protein_coding protein_coding MGP_C3HHeJ_T0022881.1 MGP_C3HHeJ_G0016447.1 mouse_genomes_project 1 167889973 167904240 + MGP_C3HHeJ_P0022881 Slc19a2 protein_coding protein_coding MGP_C3HHeJ_T0022882.1 MGP_C3HHeJ_G0016447.1 mouse_genomes_project 1 167903074 167904173 + Slc19a2 protein_coding retained_intron MGP_C3HHeJ_T0018731.1 MGP_C3HHeJ_G0015618.1 mouse_genomes_project 1 12048743 12051388 - MGP_C3HHeJ_P0018731 Msc protein_coding protein_coding MGP_C3HHeJ_T0018732.1 MGP_C3HHeJ_G0015618.1 mouse_genomes_project 1 12049143 12050751 - MGP_C3HHeJ_P0018732 Msc protein_coding protein_coding MGP_C3HHeJ_T0018733.1 MGP_C3HHeJ_G0015618.1 mouse_genomes_project 1 12049332 12050063 - Msc protein_coding retained_intron MGP_C3HHeJ_T0018734.1 MGP_C3HHeJ_G0015618.1 mouse_genomes_project 1 12050164 12051390 - Msc protein_coding retained_intron MGP_C3HHeJ_T0020061.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66150239 66359387 + MGP_C3HHeJ_P0020061 protein_coding protein_coding MGP_C3HHeJ_T0020062.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66150279 66422306 + MGP_C3HHeJ_P0020062 protein_coding protein_coding MGP_C3HHeJ_T0020063.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66150282 66422853 + MGP_C3HHeJ_P0020063 protein_coding protein_coding MGP_C3HHeJ_T0020064.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66150431 66299830 + protein_coding processed_transcript MGP_C3HHeJ_T0020065.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66150510 66171062 + protein_coding processed_transcript MGP_C3HHeJ_T0020066.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66234354 66422851 + MGP_C3HHeJ_P0020066 protein_coding protein_coding MGP_C3HHeJ_T0020067.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66234369 66422851 + MGP_C3HHeJ_P0020067 protein_coding protein_coding MGP_C3HHeJ_T0020068.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66299109 66419464 + MGP_C3HHeJ_P0020068 protein_coding protein_coding MGP_C3HHeJ_T0020069.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66299226 66382709 + protein_coding retained_intron MGP_C3HHeJ_T0020070.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66299388 66360061 + protein_coding retained_intron MGP_C3HHeJ_T0020071.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66299492 66380062 + MGP_C3HHeJ_P0020071 protein_coding protein_coding MGP_C3HHeJ_T0020072.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66343473 66422853 + MGP_C3HHeJ_P0020072 protein_coding protein_coding MGP_C3HHeJ_T0020073.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66343476 66422853 + MGP_C3HHeJ_P0020073 protein_coding protein_coding MGP_C3HHeJ_T0020074.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66359281 66392116 + MGP_C3HHeJ_P0020074 protein_coding protein_coding MGP_C3HHeJ_T0020075.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66359471 66391645 + MGP_C3HHeJ_P0020075 protein_coding protein_coding MGP_C3HHeJ_T0020076.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66365711 66420232 + protein_coding processed_transcript MGP_C3HHeJ_T0020077.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66365744 66392966 + MGP_C3HHeJ_P0020077 protein_coding protein_coding MGP_C3HHeJ_T0020078.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66365751 66386993 + protein_coding processed_transcript MGP_C3HHeJ_T0020079.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66365777 66380151 + protein_coding retained_intron MGP_C3HHeJ_T0020080.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66393975 66405895 + protein_coding processed_transcript MGP_C3HHeJ_T0020081.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66394825 66418580 + MGP_C3HHeJ_P0020081 protein_coding protein_coding MGP_C3HHeJ_T0020082.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66394825 66418580 + MGP_C3HHeJ_P0020082 protein_coding protein_coding MGP_C3HHeJ_T0020083.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66395511 66418557 + MGP_C3HHeJ_P0020083 protein_coding protein_coding MGP_C3HHeJ_T0020084.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66413954 66419729 + MGP_C3HHeJ_P0020084 protein_coding protein_coding MGP_C3HHeJ_T0099851.1 MGP_C3HHeJ_G0038045.1 mouse_genomes_project 1 59468098 59468179 + Gm26287 snoRNA snoRNA MGP_C3HHeJ_T0011923.1 MGP_C3HHeJ_G0010027.1 mouse_genomes_project 1 48354687 48355682 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018554.1 MGP_C3HHeJ_G0015591.1 mouse_genomes_project 1 3459512 3499114 + MGP_C3HHeJ_P0018554 Fam150a protein_coding protein_coding MGP_C3HHeJ_T0020809.1 MGP_C3HHeJ_G0016017.1 mouse_genomes_project 1 87323589 87356241 + MGP_C3HHeJ_P0020809 Cops7b protein_coding protein_coding MGP_C3HHeJ_T0020810.1 MGP_C3HHeJ_G0016017.1 mouse_genomes_project 1 87323623 87330560 + MGP_C3HHeJ_P0020810 Cops7b protein_coding protein_coding MGP_C3HHeJ_T0020811.1 MGP_C3HHeJ_G0016017.1 mouse_genomes_project 1 87328366 87353368 + MGP_C3HHeJ_P0020811 Cops7b protein_coding protein_coding MGP_C3HHeJ_T0020812.1 MGP_C3HHeJ_G0016017.1 mouse_genomes_project 1 87328397 87353194 + MGP_C3HHeJ_P0020812 Cops7b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020813.1 MGP_C3HHeJ_G0016017.1 mouse_genomes_project 1 87328408 87353846 + MGP_C3HHeJ_P0020813 Cops7b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020814.1 MGP_C3HHeJ_G0016017.1 mouse_genomes_project 1 87338006 87348032 + Cops7b protein_coding processed_transcript MGP_C3HHeJ_T0000546.1 MGP_C3HHeJ_G0000493.1 mouse_genomes_project 1 101285170 101287879 + TEC TEC MGP_C3HHeJ_T0020103.1 MGP_C3HHeJ_G0015886.1 mouse_genomes_project 1 66916766 66940649 - MGP_C3HHeJ_P0020103 Myl1 protein_coding protein_coding MGP_C3HHeJ_T0020104.1 MGP_C3HHeJ_G0015886.1 mouse_genomes_project 1 66916766 66927997 - MGP_C3HHeJ_P0020104 Myl1 protein_coding protein_coding MGP_C3HHeJ_T0020105.1 MGP_C3HHeJ_G0015886.1 mouse_genomes_project 1 66916768 66927714 - MGP_C3HHeJ_P0020105 Myl1 protein_coding protein_coding MGP_C3HHeJ_T0020106.1 MGP_C3HHeJ_G0015886.1 mouse_genomes_project 1 66917474 66927710 - Myl1 protein_coding processed_transcript MGP_C3HHeJ_T0020107.1 MGP_C3HHeJ_G0015886.1 mouse_genomes_project 1 66918516 66927693 - MGP_C3HHeJ_P0020107 Myl1 protein_coding protein_coding MGP_C3HHeJ_T0020108.1 MGP_C3HHeJ_G0015886.1 mouse_genomes_project 1 66919112 66940890 - MGP_C3HHeJ_P0020108 Myl1 protein_coding protein_coding MGP_C3HHeJ_T0020109.1 MGP_C3HHeJ_G0015886.1 mouse_genomes_project 1 66922518 66927050 - Myl1 protein_coding retained_intron MGP_C3HHeJ_T0020110.1 MGP_C3HHeJ_G0015886.1 mouse_genomes_project 1 66939968 66940910 - Myl1 protein_coding retained_intron MGP_C3HHeJ_T0012008.1 MGP_C3HHeJ_G0010112.1 mouse_genomes_project 1 73794371 73795367 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099831.1 MGP_C3HHeJ_G0038025.1 mouse_genomes_project 1 18387376 18387507 - Gm24171 snoRNA snoRNA MGP_C3HHeJ_T0012032.1 MGP_C3HHeJ_G0010136.1 mouse_genomes_project 1 85583386 85584308 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011788.1 MGP_C3HHeJ_G0009892.1 mouse_genomes_project 1 6659998 6661093 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000365.1 MGP_C3HHeJ_G0000315.1 mouse_genomes_project 1 17524983 17529660 - TEC TEC MGP_C3HHeJ_T0020822.1 MGP_C3HHeJ_G0016020.1 mouse_genomes_project 1 87887843 87891061 - MGP_C3HHeJ_P0020822 Alppl2 protein_coding protein_coding MGP_C3HHeJ_T0020823.1 MGP_C3HHeJ_G0016020.1 mouse_genomes_project 1 87887844 87891078 - MGP_C3HHeJ_P0020823 Alppl2 protein_coding protein_coding MGP_C3HHeJ_T0020824.1 MGP_C3HHeJ_G0016020.1 mouse_genomes_project 1 87889929 87890955 - Alppl2 protein_coding retained_intron MGP_C3HHeJ_T0002909.1 MGP_C3HHeJ_G0002733.1 mouse_genomes_project 1 190479054 190480672 + 2010103J01Rik antisense antisense MGP_C3HHeJ_T0005672.1 MGP_C3HHeJ_G0004754.1 mouse_genomes_project 1 60591035 60608180 + 2310016D23Rik lincRNA lincRNA MGP_C3HHeJ_T0005960.1 MGP_C3HHeJ_G0004980.1 mouse_genomes_project 1 189841058 189847547 + 4930488B22Rik lincRNA lincRNA MGP_C3HHeJ_T0000417.1 MGP_C3HHeJ_G0000364.1 mouse_genomes_project 1 35639630 35639976 - TEC TEC MGP_C3HHeJ_T0021388.1 MGP_C3HHeJ_G0016148.1 mouse_genomes_project 1 109151063 109189986 + MGP_C3HHeJ_P0021388 Serpinb7 protein_coding protein_coding MGP_C3HHeJ_T0021389.1 MGP_C3HHeJ_G0016148.1 mouse_genomes_project 1 109176025 109207310 + MGP_C3HHeJ_P0021389 Serpinb7 protein_coding protein_coding MGP_C3HHeJ_T0000561.1 MGP_C3HHeJ_G0000508.1 mouse_genomes_project 1 122935541 122938650 + TEC TEC MGP_C3HHeJ_T0002776.1 MGP_C3HHeJ_G0002628.1 mouse_genomes_project 1 75680926 75685160 - Gm15178 antisense antisense MGP_C3HHeJ_T0011812.1 MGP_C3HHeJ_G0009916.1 mouse_genomes_project 1 15369117 15370516 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005820.1 MGP_C3HHeJ_G0004871.1 mouse_genomes_project 1 127377643 127386501 - 1700121L03Rik lincRNA lincRNA MGP_C3HHeJ_T0019106.1 MGP_C3HHeJ_G0015700.1 mouse_genomes_project 1 34838824 34969539 - MGP_C3HHeJ_P0019106 Fam178b protein_coding protein_coding MGP_C3HHeJ_T0019107.1 MGP_C3HHeJ_G0015700.1 mouse_genomes_project 1 34838828 34873367 - Fam178b protein_coding processed_transcript MGP_C3HHeJ_T0019108.1 MGP_C3HHeJ_G0015700.1 mouse_genomes_project 1 34838828 34869355 - Fam178b protein_coding processed_transcript MGP_C3HHeJ_T0019109.1 MGP_C3HHeJ_G0015700.1 mouse_genomes_project 1 34838828 34880435 - MGP_C3HHeJ_P0019109 Fam178b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019110.1 MGP_C3HHeJ_G0015700.1 mouse_genomes_project 1 34840460 34880978 - MGP_C3HHeJ_P0019110 Fam178b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019111.1 MGP_C3HHeJ_G0015700.1 mouse_genomes_project 1 34840996 34867728 - Fam178b protein_coding processed_transcript MGP_C3HHeJ_T0019112.1 MGP_C3HHeJ_G0015700.1 mouse_genomes_project 1 34852523 34880456 - Fam178b protein_coding processed_transcript MGP_C3HHeJ_T0019113.1 MGP_C3HHeJ_G0015700.1 mouse_genomes_project 1 34879999 34969539 - MGP_C3HHeJ_P0019113 Fam178b protein_coding protein_coding MGP_C3HHeJ_T0021379.1 MGP_C3HHeJ_G0016143.1 mouse_genomes_project 1 108675302 108697966 + MGP_C3HHeJ_P0021379 Serpinb13 protein_coding protein_coding MGP_C3HHeJ_T0021380.1 MGP_C3HHeJ_G0016143.1 mouse_genomes_project 1 108675312 108697669 + MGP_C3HHeJ_P0021380 Serpinb13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000666.1 MGP_C3HHeJ_G0000611.1 mouse_genomes_project 1 160203749 160206391 - TEC TEC MGP_C3HHeJ_T0099880.1 MGP_C3HHeJ_G0038074.1 mouse_genomes_project 1 124665326 124665470 + Gm25771 snoRNA snoRNA MGP_C3HHeJ_T0023805.1 MGP_C3HHeJ_G0016670.1 mouse_genomes_project 1 189919511 189943993 - MGP_C3HHeJ_P0023805 Marc1 protein_coding protein_coding MGP_C3HHeJ_T0023806.1 MGP_C3HHeJ_G0016670.1 mouse_genomes_project 1 189920453 189943809 - MGP_C3HHeJ_P0023806 Marc1 protein_coding protein_coding MGP_C3HHeJ_T0011952.1 MGP_C3HHeJ_G0010056.1 mouse_genomes_project 1 58248389 58248741 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002807.1 MGP_C3HHeJ_G0002653.1 mouse_genomes_project 1 121542711 121550167 - Gm27184 antisense antisense MGP_C3HHeJ_T0012150.1 MGP_C3HHeJ_G0010254.1 mouse_genomes_project 1 140900742 140901226 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005894.1 MGP_C3HHeJ_G0004930.1 mouse_genomes_project 1 167786724 167790369 - Gm16548 lincRNA lincRNA MGP_C3HHeJ_T0000371.1 MGP_C3HHeJ_G0000320.1 mouse_genomes_project 1 21629822 21630212 + TEC TEC MGP_C3HHeJ_T0000372.1 MGP_C3HHeJ_G0000320.1 mouse_genomes_project 1 21629824 21630212 + TEC TEC MGP_C3HHeJ_T0020516.1 MGP_C3HHeJ_G0015958.1 mouse_genomes_project 1 75765481 75770187 - MGP_C3HHeJ_P0020516 Chpf protein_coding protein_coding MGP_C3HHeJ_T0020517.1 MGP_C3HHeJ_G0015958.1 mouse_genomes_project 1 75765487 75770223 - MGP_C3HHeJ_P0020517 Chpf protein_coding protein_coding MGP_C3HHeJ_T0020518.1 MGP_C3HHeJ_G0015958.1 mouse_genomes_project 1 75765488 75769659 - Chpf protein_coding retained_intron MGP_C3HHeJ_T0020519.1 MGP_C3HHeJ_G0015958.1 mouse_genomes_project 1 75765488 75770035 - MGP_C3HHeJ_P0020519 Chpf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020520.1 MGP_C3HHeJ_G0015958.1 mouse_genomes_project 1 75768422 75770030 - MGP_C3HHeJ_P0020520 Chpf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098641.1 MGP_C3HHeJ_G0036835.1 mouse_genomes_project 1 119545620 119545784 + Gm24030 snRNA snRNA MGP_C3HHeJ_T0020650.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83256962 83267551 + Mff protein_coding processed_transcript MGP_C3HHeJ_T0020651.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83256963 83288088 + MGP_C3HHeJ_P0020651 Mff protein_coding protein_coding MGP_C3HHeJ_T0020652.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83256969 83288091 + MGP_C3HHeJ_P0020652 Mff protein_coding protein_coding MGP_C3HHeJ_T0020653.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83256978 83268772 + Mff protein_coding retained_intron MGP_C3HHeJ_T0020654.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83256992 83288094 + MGP_C3HHeJ_P0020654 Mff protein_coding protein_coding MGP_C3HHeJ_T0020655.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83257007 83284755 + MGP_C3HHeJ_P0020655 Mff protein_coding protein_coding MGP_C3HHeJ_T0020656.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83261315 83284609 + MGP_C3HHeJ_P0020656 Mff protein_coding protein_coding MGP_C3HHeJ_T0020657.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83261369 83274846 + MGP_C3HHeJ_P0020657 Mff protein_coding protein_coding MGP_C3HHeJ_T0020658.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83261369 83283549 + MGP_C3HHeJ_P0020658 Mff protein_coding protein_coding MGP_C3HHeJ_T0020659.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83274600 83284687 + Mff protein_coding retained_intron MGP_C3HHeJ_T0020660.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83274939 83278857 + Mff protein_coding retained_intron MGP_C3HHeJ_T0020661.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83281356 83284696 + Mff protein_coding retained_intron MGP_C3HHeJ_T0020583.1 MGP_C3HHeJ_G0015969.1 mouse_genomes_project 1 79069596 79124257 + MGP_C3HHeJ_P0020583 Acsl3 protein_coding protein_coding MGP_C3HHeJ_T0020584.1 MGP_C3HHeJ_G0015969.1 mouse_genomes_project 1 79069654 79123481 + MGP_C3HHeJ_P0020584 Acsl3 protein_coding protein_coding MGP_C3HHeJ_T0020587.1 MGP_C3HHeJ_G0015969.1 mouse_genomes_project 1 79084010 79104798 + MGP_C3HHeJ_P0020587 Acsl3 protein_coding protein_coding MGP_C3HHeJ_T0020588.1 MGP_C3HHeJ_G0015969.1 mouse_genomes_project 1 79096784 79124261 + MGP_C3HHeJ_P0020588 Acsl3 protein_coding protein_coding MGP_C3HHeJ_T0020589.1 MGP_C3HHeJ_G0015969.1 mouse_genomes_project 1 79097058 79109170 + Acsl3 protein_coding retained_intron MGP_C3HHeJ_T0020590.1 MGP_C3HHeJ_G0015969.1 mouse_genomes_project 1 79106779 79113547 + Acsl3 protein_coding retained_intron MGP_C3HHeJ_T0020591.1 MGP_C3HHeJ_G0015969.1 mouse_genomes_project 1 79113173 79117803 + Acsl3 protein_coding retained_intron MGP_C3HHeJ_T0000481.1 MGP_C3HHeJ_G0000428.1 mouse_genomes_project 1 68875620 68878894 - TEC TEC MGP_C3HHeJ_T0022447.1 MGP_C3HHeJ_G0016367.1 mouse_genomes_project 1 157003146 157008283 + MGP_C3HHeJ_P0022447 Rgs16 protein_coding protein_coding MGP_C3HHeJ_T0011866.1 MGP_C3HHeJ_G0009970.1 mouse_genomes_project 1 31627834 31628252 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021686.1 MGP_C3HHeJ_G0016212.1 mouse_genomes_project 1 133248166 133263117 + MGP_C3HHeJ_P0021686 Fcmr protein_coding protein_coding MGP_C3HHeJ_T0021687.1 MGP_C3HHeJ_G0016212.1 mouse_genomes_project 1 133248277 133257570 + Fcmr protein_coding processed_transcript MGP_C3HHeJ_T0021688.1 MGP_C3HHeJ_G0016212.1 mouse_genomes_project 1 133260607 133263105 + Fcmr protein_coding processed_transcript MGP_C3HHeJ_T0021689.1 MGP_C3HHeJ_G0016212.1 mouse_genomes_project 1 133260780 133263116 + Fcmr protein_coding processed_transcript MGP_C3HHeJ_T0018704.1 MGP_C3HHeJ_G0015612.1 mouse_genomes_project 1 10347284 10361655 - MGP_C3HHeJ_P0018704 Prdm14 protein_coding protein_coding MGP_C3HHeJ_T0005779.1 MGP_C3HHeJ_G0004840.1 mouse_genomes_project 1 99524441 99545398 + Gm29461 lincRNA lincRNA MGP_C3HHeJ_T0099896.1 MGP_C3HHeJ_G0038090.1 mouse_genomes_project 1 164181626 164181758 + Gm23528 snoRNA snoRNA MGP_C3HHeJ_T0101566.1 MGP_C3HHeJ_G0039532.1 mouse_genomes_project 1 89090862 89091645 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0019202.1 MGP_C3HHeJ_G0015715.1 mouse_genomes_project 1 36248973 36257033 + MGP_C3HHeJ_P0019202 Mrpl30 protein_coding protein_coding MGP_C3HHeJ_T0019203.1 MGP_C3HHeJ_G0015715.1 mouse_genomes_project 1 36249028 36256862 + MGP_C3HHeJ_P0019203 Mrpl30 protein_coding protein_coding MGP_C3HHeJ_T0019204.1 MGP_C3HHeJ_G0015715.1 mouse_genomes_project 1 36249029 36251744 + Mrpl30 protein_coding retained_intron MGP_C3HHeJ_T0019205.1 MGP_C3HHeJ_G0015715.1 mouse_genomes_project 1 36249039 36252482 + MGP_C3HHeJ_P0019205 Mrpl30 protein_coding protein_coding MGP_C3HHeJ_T0019206.1 MGP_C3HHeJ_G0015715.1 mouse_genomes_project 1 36251430 36256663 + MGP_C3HHeJ_P0019206 Mrpl30 protein_coding protein_coding MGP_C3HHeJ_T0019207.1 MGP_C3HHeJ_G0015715.1 mouse_genomes_project 1 36252432 36256836 + MGP_C3HHeJ_P0019207 Mrpl30 protein_coding protein_coding MGP_C3HHeJ_T0019208.1 MGP_C3HHeJ_G0015715.1 mouse_genomes_project 1 36255753 36256623 + Mrpl30 protein_coding retained_intron MGP_C3HHeJ_T0000713.1 MGP_C3HHeJ_G0000658.1 mouse_genomes_project 1 177211363 177212224 + TEC TEC MGP_C3HHeJ_T0021191.1 MGP_C3HHeJ_G0016104.1 mouse_genomes_project 1 94472562 94479217 - MGP_C3HHeJ_P0021191 Mterf4 protein_coding protein_coding MGP_C3HHeJ_T0021192.1 MGP_C3HHeJ_G0016104.1 mouse_genomes_project 1 94474568 94479269 - MGP_C3HHeJ_P0021192 Mterf4 protein_coding protein_coding MGP_C3HHeJ_T0021193.1 MGP_C3HHeJ_G0016104.1 mouse_genomes_project 1 94474791 94476257 - Mterf4 protein_coding processed_transcript MGP_C3HHeJ_T0021194.1 MGP_C3HHeJ_G0016104.1 mouse_genomes_project 1 94475280 94479218 - MGP_C3HHeJ_P0021194 Mterf4 protein_coding protein_coding MGP_C3HHeJ_T0021195.1 MGP_C3HHeJ_G0016104.1 mouse_genomes_project 1 94476852 94479233 - Mterf4 protein_coding retained_intron MGP_C3HHeJ_T0005694.1 MGP_C3HHeJ_G0004773.1 mouse_genomes_project 1 69589409 69592438 + Gm28497 lincRNA lincRNA MGP_C3HHeJ_T0018632.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7172673 7174029 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018633.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7172692 7183639 + MGP_C3HHeJ_P0018633 Cspp1 protein_coding protein_coding MGP_C3HHeJ_T0018634.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7172903 7277543 + MGP_C3HHeJ_P0018634 Cspp1 protein_coding protein_coding MGP_C3HHeJ_T0018635.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7172912 7201830 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018636.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7172935 7199111 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018637.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7172948 7207056 + MGP_C3HHeJ_P0018637 Cspp1 protein_coding protein_coding MGP_C3HHeJ_T0018638.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7174453 7198935 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018639.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7174459 7207914 + MGP_C3HHeJ_P0018639 Cspp1 protein_coding protein_coding MGP_C3HHeJ_T0018640.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7174459 7208271 + MGP_C3HHeJ_P0018640 Cspp1 protein_coding protein_coding MGP_C3HHeJ_T0018641.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7174463 7198921 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018642.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7174471 7207042 + MGP_C3HHeJ_P0018642 Cspp1 protein_coding protein_coding MGP_C3HHeJ_T0018643.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7174509 7200050 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018644.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7174841 7198886 + MGP_C3HHeJ_P0018644 Cspp1 protein_coding protein_coding MGP_C3HHeJ_T0018645.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7182591 7276920 + MGP_C3HHeJ_P0018645 Cspp1 protein_coding protein_coding MGP_C3HHeJ_T0018646.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7196985 7206515 + MGP_C3HHeJ_P0018646 Cspp1 protein_coding protein_coding MGP_C3HHeJ_T0018647.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7211114 7216150 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018648.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7214310 7227456 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018649.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7214800 7224891 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018650.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7214853 7231894 + MGP_C3HHeJ_P0018650 Cspp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018651.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7229385 7231956 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018652.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7237504 7249026 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018653.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7244699 7249015 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018654.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7254331 7275178 + MGP_C3HHeJ_P0018654 Cspp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018655.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7256880 7258202 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018656.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7267138 7271022 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018657.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7270962 7274464 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018658.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7274974 7277097 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0000589.1 MGP_C3HHeJ_G0000536.1 mouse_genomes_project 1 132000092 132002765 + TEC TEC MGP_C3HHeJ_T0019784.1 MGP_C3HHeJ_G0015828.1 mouse_genomes_project 1 58486315 58539975 + MGP_C3HHeJ_P0019784 Casp8 protein_coding protein_coding MGP_C3HHeJ_T0019785.1 MGP_C3HHeJ_G0015828.1 mouse_genomes_project 1 58486418 58539226 + MGP_C3HHeJ_P0019785 Casp8 protein_coding protein_coding MGP_C3HHeJ_T0019786.1 MGP_C3HHeJ_G0015828.1 mouse_genomes_project 1 58493360 58539480 + MGP_C3HHeJ_P0019786 Casp8 protein_coding protein_coding MGP_C3HHeJ_T0019787.1 MGP_C3HHeJ_G0015828.1 mouse_genomes_project 1 58493511 58539226 + MGP_C3HHeJ_P0019787 Casp8 protein_coding protein_coding MGP_C3HHeJ_T0022470.1 MGP_C3HHeJ_G0016373.1 mouse_genomes_project 1 157514224 157518731 + MGP_C3HHeJ_P0022470 Zfp648 protein_coding protein_coding MGP_C3HHeJ_T0005799.1 MGP_C3HHeJ_G0004856.1 mouse_genomes_project 1 121318518 121341331 - Gm29456 lincRNA lincRNA MGP_C3HHeJ_T0021677.1 MGP_C3HHeJ_G0016208.1 mouse_genomes_project 1 133092854 133099928 + MGP_C3HHeJ_P0021677 Yod1 protein_coding protein_coding MGP_C3HHeJ_T0022559.1 MGP_C3HHeJ_G0016389.1 mouse_genomes_project 1 159647604 159746766 - MGP_C3HHeJ_P0022559 Axdnd1 protein_coding protein_coding MGP_C3HHeJ_T0022560.1 MGP_C3HHeJ_G0016389.1 mouse_genomes_project 1 159647604 159743924 - MGP_C3HHeJ_P0022560 Axdnd1 protein_coding protein_coding MGP_C3HHeJ_T0022561.1 MGP_C3HHeJ_G0016389.1 mouse_genomes_project 1 159681630 159698394 - Axdnd1 protein_coding processed_transcript MGP_C3HHeJ_T0022562.1 MGP_C3HHeJ_G0016389.1 mouse_genomes_project 1 159687420 159723920 - Axdnd1 protein_coding processed_transcript MGP_C3HHeJ_T0022563.1 MGP_C3HHeJ_G0016389.1 mouse_genomes_project 1 159688013 159722473 - MGP_C3HHeJ_P0022563 Axdnd1 protein_coding protein_coding MGP_C3HHeJ_T0022564.1 MGP_C3HHeJ_G0016389.1 mouse_genomes_project 1 159723980 159726691 - Axdnd1 protein_coding processed_transcript MGP_C3HHeJ_T0022565.1 MGP_C3HHeJ_G0016389.1 mouse_genomes_project 1 159743974 159745500 - MGP_C3HHeJ_P0022565 Axdnd1 protein_coding protein_coding MGP_C3HHeJ_T0022566.1 MGP_C3HHeJ_G0016389.1 mouse_genomes_project 1 159743974 159745536 - MGP_C3HHeJ_P0022566 Axdnd1 protein_coding protein_coding MGP_C3HHeJ_T0000565.1 MGP_C3HHeJ_G0000512.1 mouse_genomes_project 1 124633420 124634542 + TEC TEC MGP_C3HHeJ_T0021666.1 MGP_C3HHeJ_G0016206.1 mouse_genomes_project 1 133042557 133091327 - MGP_C3HHeJ_P0021666 Gm29427 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019632.1 MGP_C3HHeJ_G0015800.1 mouse_genomes_project 1 54565008 54575268 - MGP_C3HHeJ_P0019632 Hspd1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0019633.1 MGP_C3HHeJ_G0015800.1 mouse_genomes_project 1 54565015 54575245 - MGP_C3HHeJ_P0019633 Hspd1 protein_coding protein_coding MGP_C3HHeJ_T0019634.1 MGP_C3HHeJ_G0015800.1 mouse_genomes_project 1 54570287 54575464 - MGP_C3HHeJ_P0019634 Hspd1 protein_coding protein_coding MGP_C3HHeJ_T0019635.1 MGP_C3HHeJ_G0015800.1 mouse_genomes_project 1 54571753 54575464 - MGP_C3HHeJ_P0019635 Hspd1 protein_coding protein_coding MGP_C3HHeJ_T0022484.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158491500 158539994 + MGP_C3HHeJ_P0022484 Stx6 protein_coding protein_coding MGP_C3HHeJ_T0022485.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158491504 158536279 + MGP_C3HHeJ_P0022485 Stx6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022486.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158491533 158532590 + MGP_C3HHeJ_P0022486 Stx6 protein_coding protein_coding MGP_C3HHeJ_T0022487.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158491556 158525803 + Stx6 protein_coding processed_transcript MGP_C3HHeJ_T0022488.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158491584 158510612 + Stx6 protein_coding retained_intron MGP_C3HHeJ_T0022489.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158517757 158522629 + Stx6 protein_coding retained_intron MGP_C3HHeJ_T0022490.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158521672 158536357 + Stx6 protein_coding retained_intron MGP_C3HHeJ_T0022491.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158522116 158528095 + Stx6 protein_coding retained_intron MGP_C3HHeJ_T0022492.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158525784 158542552 + MGP_C3HHeJ_P0022492 Stx6 protein_coding protein_coding MGP_C3HHeJ_T0022493.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158529353 158536582 + Stx6 protein_coding processed_transcript MGP_C3HHeJ_T0011992.1 MGP_C3HHeJ_G0010096.1 mouse_genomes_project 1 66016591 66017337 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019226.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36426735 36502214 - MGP_C3HHeJ_P0019226 Rev1 protein_coding protein_coding MGP_C3HHeJ_T0019227.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36426745 36462004 - Rev1 protein_coding retained_intron MGP_C3HHeJ_T0019228.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36427249 36428200 - Rev1 protein_coding retained_intron MGP_C3HHeJ_T0019229.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36430468 36431652 - Rev1 protein_coding retained_intron MGP_C3HHeJ_T0019230.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36441571 36457655 - MGP_C3HHeJ_P0019230 Rev1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019231.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36445340 36459526 - MGP_C3HHeJ_P0019231 Rev1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019232.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36448520 36455233 - Rev1 protein_coding processed_transcript MGP_C3HHeJ_T0019233.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36452949 36457721 - Rev1 protein_coding retained_intron MGP_C3HHeJ_T0019234.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36465962 36500848 - MGP_C3HHeJ_P0019234 Rev1 protein_coding protein_coding MGP_C3HHeJ_T0019235.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36471460 36500864 - MGP_C3HHeJ_P0019235 Rev1 protein_coding protein_coding MGP_C3HHeJ_T0019236.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36480226 36502353 - MGP_C3HHeJ_P0019236 Rev1 protein_coding protein_coding MGP_C3HHeJ_T0011885.1 MGP_C3HHeJ_G0009989.1 mouse_genomes_project 1 37114334 37114836 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002692.1 MGP_C3HHeJ_G0002567.1 mouse_genomes_project 1 13579795 13600149 + Gm28095 antisense antisense MGP_C3HHeJ_T0000557.1 MGP_C3HHeJ_G0000504.1 mouse_genomes_project 1 112789651 112792404 - TEC TEC MGP_C3HHeJ_T0022816.1 MGP_C3HHeJ_G0016430.1 mouse_genomes_project 1 166393235 166414537 - MGP_C3HHeJ_P0022816 Fmo4 protein_coding protein_coding MGP_C3HHeJ_T0022817.1 MGP_C3HHeJ_G0016430.1 mouse_genomes_project 1 166393930 166413414 - MGP_C3HHeJ_P0022817 Fmo4 protein_coding protein_coding MGP_C3HHeJ_T0022818.1 MGP_C3HHeJ_G0016430.1 mouse_genomes_project 1 166402341 166414537 - Fmo4 protein_coding retained_intron MGP_C3HHeJ_T0022819.1 MGP_C3HHeJ_G0016430.1 mouse_genomes_project 1 166403098 166407963 - Fmo4 protein_coding retained_intron MGP_C3HHeJ_T0022820.1 MGP_C3HHeJ_G0016430.1 mouse_genomes_project 1 166407002 166414792 - MGP_C3HHeJ_P0022820 Fmo4 protein_coding protein_coding MGP_C3HHeJ_T0022821.1 MGP_C3HHeJ_G0016430.1 mouse_genomes_project 1 166407773 166414838 - MGP_C3HHeJ_P0022821 Fmo4 protein_coding protein_coding MGP_C3HHeJ_T0012038.1 MGP_C3HHeJ_G0010142.1 mouse_genomes_project 1 88925242 88926824 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022101.1 MGP_C3HHeJ_G0016300.1 mouse_genomes_project 1 138471519 138520194 - MGP_C3HHeJ_P0022101 Pkp1 protein_coding protein_coding MGP_C3HHeJ_T0022102.1 MGP_C3HHeJ_G0016300.1 mouse_genomes_project 1 138473074 138520107 - MGP_C3HHeJ_P0022102 Pkp1 protein_coding protein_coding MGP_C3HHeJ_T0022103.1 MGP_C3HHeJ_G0016300.1 mouse_genomes_project 1 138473490 138520129 - MGP_C3HHeJ_P0022103 Pkp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022104.1 MGP_C3HHeJ_G0016300.1 mouse_genomes_project 1 138477442 138478400 - Pkp1 protein_coding retained_intron MGP_C3HHeJ_T0023178.1 MGP_C3HHeJ_G0016516.1 mouse_genomes_project 1 175190087 175195272 - Ppox protein_coding retained_intron MGP_C3HHeJ_T0023179.1 MGP_C3HHeJ_G0016516.1 mouse_genomes_project 1 175191058 175195272 - Ppox protein_coding retained_intron MGP_C3HHeJ_T0023180.1 MGP_C3HHeJ_G0016516.1 mouse_genomes_project 1 175191058 175195272 - MGP_C3HHeJ_P0023180 Ppox protein_coding protein_coding MGP_C3HHeJ_T0023181.1 MGP_C3HHeJ_G0016516.1 mouse_genomes_project 1 175191513 175194845 - MGP_C3HHeJ_P0023181 Ppox protein_coding protein_coding MGP_C3HHeJ_T0023182.1 MGP_C3HHeJ_G0016516.1 mouse_genomes_project 1 175192201 175193898 - Ppox protein_coding retained_intron MGP_C3HHeJ_T0023183.1 MGP_C3HHeJ_G0016516.1 mouse_genomes_project 1 175193931 175194607 - Ppox protein_coding processed_transcript MGP_C3HHeJ_T0023184.1 MGP_C3HHeJ_G0016516.1 mouse_genomes_project 1 175194178 175195272 - Ppox protein_coding retained_intron MGP_C3HHeJ_T0023185.1 MGP_C3HHeJ_G0016516.1 mouse_genomes_project 1 175194449 175195205 - Ppox protein_coding retained_intron MGP_C3HHeJ_T0101550.1 MGP_C3HHeJ_G0039516.1 mouse_genomes_project 1 58542551 58635229 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011823.1 MGP_C3HHeJ_G0009927.1 mouse_genomes_project 1 18902610 18902826 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020938.1 MGP_C3HHeJ_G0016041.1 mouse_genomes_project 1 88959273 89122344 + MGP_C3HHeJ_P0020938 Ugt1a8 protein_coding protein_coding MGP_C3HHeJ_T0016761.1 MGP_C3HHeJ_G0014854.1 mouse_genomes_project 1 41312385 41318763 - Pantr2 processed_transcript lincRNA MGP_C3HHeJ_T0016762.1 MGP_C3HHeJ_G0014854.1 mouse_genomes_project 1 41312396 41313377 - Pantr2 processed_transcript TEC MGP_C3HHeJ_T0023010.1 MGP_C3HHeJ_G0016475.1 mouse_genomes_project 1 170736222 170831368 + MGP_C3HHeJ_P0023010 Fam78b protein_coding protein_coding MGP_C3HHeJ_T0023011.1 MGP_C3HHeJ_G0016475.1 mouse_genomes_project 1 170736222 170831368 + MGP_C3HHeJ_P0023011 Fam78b protein_coding protein_coding MGP_C3HHeJ_T0023012.1 MGP_C3HHeJ_G0016475.1 mouse_genomes_project 1 170736237 170829143 + MGP_C3HHeJ_P0023012 Fam78b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023013.1 MGP_C3HHeJ_G0016475.1 mouse_genomes_project 1 170736271 170821190 + MGP_C3HHeJ_P0023013 Fam78b protein_coding protein_coding MGP_C3HHeJ_T0023014.1 MGP_C3HHeJ_G0016475.1 mouse_genomes_project 1 170736385 170828790 + MGP_C3HHeJ_P0023014 Fam78b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023015.1 MGP_C3HHeJ_G0016475.1 mouse_genomes_project 1 170736394 170831075 + MGP_C3HHeJ_P0023015 Fam78b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005983.1 MGP_C3HHeJ_G0005000.1 mouse_genomes_project 1 196843516 196873918 - Gm32200 lincRNA lincRNA MGP_C3HHeJ_T0099829.1 MGP_C3HHeJ_G0038023.1 mouse_genomes_project 1 16994240 16994305 - Gm24633 snoRNA snoRNA MGP_C3HHeJ_T0002836.1 MGP_C3HHeJ_G0002675.1 mouse_genomes_project 1 138867788 138882788 + Gm26781 antisense antisense MGP_C3HHeJ_T0019412.1 MGP_C3HHeJ_G0015760.1 mouse_genomes_project 1 42814637 42816451 + Ercc5 protein_coding retained_intron MGP_C3HHeJ_T0019413.1 MGP_C3HHeJ_G0015760.1 mouse_genomes_project 1 42814740 42851130 + Ercc5 protein_coding retained_intron MGP_C3HHeJ_T0019414.1 MGP_C3HHeJ_G0015760.1 mouse_genomes_project 1 42814740 42851130 + MGP_C3HHeJ_P0019414 Ercc5 protein_coding protein_coding MGP_C3HHeJ_T0019415.1 MGP_C3HHeJ_G0015760.1 mouse_genomes_project 1 42814802 42826789 + Ercc5 protein_coding processed_transcript MGP_C3HHeJ_T0019416.1 MGP_C3HHeJ_G0015760.1 mouse_genomes_project 1 42814825 42823201 + Ercc5 protein_coding processed_transcript MGP_C3HHeJ_T0019417.1 MGP_C3HHeJ_G0015760.1 mouse_genomes_project 1 42821889 42836755 + Ercc5 protein_coding retained_intron MGP_C3HHeJ_T0019418.1 MGP_C3HHeJ_G0015760.1 mouse_genomes_project 1 42823775 42836974 + Ercc5 protein_coding retained_intron MGP_C3HHeJ_T0099910.1 MGP_C3HHeJ_G0038104.1 mouse_genomes_project 1 169138080 169138165 + Gm24637 snoRNA snoRNA MGP_C3HHeJ_T0021297.1 MGP_C3HHeJ_G0016127.1 mouse_genomes_project 1 99133891 99153670 + MGP_C3HHeJ_P0021297 Gin1 protein_coding protein_coding MGP_C3HHeJ_T0021298.1 MGP_C3HHeJ_G0016127.1 mouse_genomes_project 1 99133898 99141848 + MGP_C3HHeJ_P0021298 Gin1 protein_coding protein_coding MGP_C3HHeJ_T0021299.1 MGP_C3HHeJ_G0016127.1 mouse_genomes_project 1 99133916 99154410 + MGP_C3HHeJ_P0021299 Gin1 protein_coding protein_coding MGP_C3HHeJ_T0021300.1 MGP_C3HHeJ_G0016127.1 mouse_genomes_project 1 99133920 99134725 + Gin1 protein_coding processed_transcript MGP_C3HHeJ_T0021301.1 MGP_C3HHeJ_G0016127.1 mouse_genomes_project 1 99133929 99153707 + MGP_C3HHeJ_P0021301 Gin1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021302.1 MGP_C3HHeJ_G0016127.1 mouse_genomes_project 1 99137427 99139749 + Gin1 protein_coding retained_intron MGP_C3HHeJ_T0021303.1 MGP_C3HHeJ_G0016127.1 mouse_genomes_project 1 99141107 99145836 + MGP_C3HHeJ_P0021303 Gin1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020196.1 MGP_C3HHeJ_G0015907.1 mouse_genomes_project 1 73281240 73282076 - MGP_C3HHeJ_P0020196 Tnp1 protein_coding protein_coding MGP_C3HHeJ_T0000438.1 MGP_C3HHeJ_G0000385.1 mouse_genomes_project 1 51891081 51892967 - TEC TEC MGP_C3HHeJ_T0000687.1 MGP_C3HHeJ_G0000632.1 mouse_genomes_project 1 164459957 164461712 + TEC TEC MGP_C3HHeJ_T0002774.1 MGP_C3HHeJ_G0002627.1 mouse_genomes_project 1 75657091 75663884 - Gm15179 antisense antisense MGP_C3HHeJ_T0002775.1 MGP_C3HHeJ_G0002627.1 mouse_genomes_project 1 75657151 75659334 - Gm15179 antisense antisense MGP_C3HHeJ_T0012061.1 MGP_C3HHeJ_G0010165.1 mouse_genomes_project 1 101741121 101741968 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022735.1 MGP_C3HHeJ_G0016415.1 mouse_genomes_project 1 164642872 164690883 - Klhl20 protein_coding retained_intron MGP_C3HHeJ_T0022736.1 MGP_C3HHeJ_G0016415.1 mouse_genomes_project 1 164642872 164690883 - MGP_C3HHeJ_P0022736 Klhl20 protein_coding protein_coding MGP_C3HHeJ_T0022737.1 MGP_C3HHeJ_G0016415.1 mouse_genomes_project 1 164642877 164690800 - MGP_C3HHeJ_P0022737 Klhl20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022738.1 MGP_C3HHeJ_G0016415.1 mouse_genomes_project 1 164642895 164650149 - MGP_C3HHeJ_P0022738 Klhl20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022739.1 MGP_C3HHeJ_G0016415.1 mouse_genomes_project 1 164650968 164690883 - Klhl20 protein_coding retained_intron MGP_C3HHeJ_T0022740.1 MGP_C3HHeJ_G0016415.1 mouse_genomes_project 1 164657379 164661592 - Klhl20 protein_coding retained_intron MGP_C3HHeJ_T0022741.1 MGP_C3HHeJ_G0016415.1 mouse_genomes_project 1 164664807 164690814 - Klhl20 protein_coding retained_intron MGP_C3HHeJ_T0021824.1 MGP_C3HHeJ_G0016243.1 mouse_genomes_project 1 134954113 134956523 + MGP_C3HHeJ_P0021824 Tmem81 protein_coding protein_coding MGP_C3HHeJ_T0021825.1 MGP_C3HHeJ_G0016243.1 mouse_genomes_project 1 134954772 134956523 + MGP_C3HHeJ_P0021825 Tmem81 protein_coding protein_coding MGP_C3HHeJ_T0020522.1 MGP_C3HHeJ_G0015960.1 mouse_genomes_project 1 75770447 75776604 + MGP_C3HHeJ_P0020522 Tmem198 protein_coding protein_coding MGP_C3HHeJ_T0020523.1 MGP_C3HHeJ_G0015960.1 mouse_genomes_project 1 75770491 75773528 + MGP_C3HHeJ_P0020523 Tmem198 protein_coding protein_coding MGP_C3HHeJ_T0020524.1 MGP_C3HHeJ_G0015960.1 mouse_genomes_project 1 75770495 75776616 + MGP_C3HHeJ_P0020524 Tmem198 protein_coding protein_coding MGP_C3HHeJ_T0020525.1 MGP_C3HHeJ_G0015960.1 mouse_genomes_project 1 75770619 75773591 + MGP_C3HHeJ_P0020525 Tmem198 protein_coding protein_coding MGP_C3HHeJ_T0023546.1 MGP_C3HHeJ_G0016618.1 mouse_genomes_project 1 183414324 183609464 + Kif26b protein_coding retained_intron MGP_C3HHeJ_T0023547.1 MGP_C3HHeJ_G0016618.1 mouse_genomes_project 1 183414324 183841557 + MGP_C3HHeJ_P0023547 Kif26b protein_coding protein_coding MGP_C3HHeJ_T0023548.1 MGP_C3HHeJ_G0016618.1 mouse_genomes_project 1 183695387 183835213 + MGP_C3HHeJ_P0023548 Kif26b protein_coding protein_coding MGP_C3HHeJ_T0011767.1 MGP_C3HHeJ_G0009871.1 mouse_genomes_project 1 4114626 4114951 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022757.1 MGP_C3HHeJ_G0016420.1 mouse_genomes_project 1 165358831 165366624 - MGP_C3HHeJ_P0022757 Fasl protein_coding protein_coding MGP_C3HHeJ_T0022758.1 MGP_C3HHeJ_G0016420.1 mouse_genomes_project 1 165359564 165366487 - MGP_C3HHeJ_P0022758 Fasl protein_coding protein_coding MGP_C3HHeJ_T0012172.1 MGP_C3HHeJ_G0010276.1 mouse_genomes_project 1 151589367 151589670 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005726.1 MGP_C3HHeJ_G0004794.1 mouse_genomes_project 1 79000769 79017483 - 5730419F03Rik lincRNA lincRNA MGP_C3HHeJ_T0011153.1 MGP_C3HHeJ_G0009286.1 mouse_genomes_project 1 63037356 63037532 + Gm27390 misc_RNA misc_RNA MGP_C3HHeJ_T0022292.1 MGP_C3HHeJ_G0016340.1 mouse_genomes_project 1 153215874 153224249 + MGP_C3HHeJ_P0022292 Ptgs2 protein_coding protein_coding MGP_C3HHeJ_T0022293.1 MGP_C3HHeJ_G0016340.1 mouse_genomes_project 1 153216175 153217171 + MGP_C3HHeJ_P0022293 Ptgs2 protein_coding protein_coding MGP_C3HHeJ_T0023410.1 MGP_C3HHeJ_G0016576.1 mouse_genomes_project 1 178261881 178312288 - MGP_C3HHeJ_P0023410 Ifi203 protein_coding protein_coding MGP_C3HHeJ_T0023413.1 MGP_C3HHeJ_G0016576.1 mouse_genomes_project 1 178296731 178312288 - Ifi203 protein_coding processed_transcript MGP_C3HHeJ_T0023417.1 MGP_C3HHeJ_G0016576.1 mouse_genomes_project 1 178306400 178312196 - Ifi203 protein_coding processed_transcript MGP_C3HHeJ_T0009398.1 MGP_C3HHeJ_G0007531.1 mouse_genomes_project 1 44003635 44003776 + miRNA miRNA MGP_C3HHeJ_T0012274.1 MGP_C3HHeJ_G0010378.1 mouse_genomes_project 1 198906782 198907185 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098597.1 MGP_C3HHeJ_G0036791.1 mouse_genomes_project 1 6951926 6952031 - Gm22607 snRNA snRNA MGP_C3HHeJ_T0016765.1 MGP_C3HHeJ_G0014856.1 mouse_genomes_project 1 43108883 43110522 + Gm28893 processed_transcript processed_transcript MGP_C3HHeJ_T0020409.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75480192 75481065 - Glb1l protein_coding processed_transcript MGP_C3HHeJ_T0020410.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75480199 75495881 - MGP_C3HHeJ_P0020410 Glb1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020411.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75481047 75484547 - Glb1l protein_coding retained_intron MGP_C3HHeJ_T0020412.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75481303 75495881 - MGP_C3HHeJ_P0020412 Glb1l protein_coding protein_coding MGP_C3HHeJ_T0020413.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75481447 75494526 - MGP_C3HHeJ_P0020413 Glb1l protein_coding protein_coding MGP_C3HHeJ_T0020414.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75481447 75486265 - MGP_C3HHeJ_P0020414 Glb1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020415.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75481785 75494597 - Glb1l protein_coding retained_intron MGP_C3HHeJ_T0020416.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75482049 75484623 - Glb1l protein_coding retained_intron MGP_C3HHeJ_T0020417.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75484326 75485670 - Glb1l protein_coding retained_intron MGP_C3HHeJ_T0020418.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75484580 75485198 - Glb1l protein_coding retained_intron MGP_C3HHeJ_T0020419.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75486093 75495916 - MGP_C3HHeJ_P0020419 Glb1l protein_coding protein_coding MGP_C3HHeJ_T0020420.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75492805 75495856 - Glb1l protein_coding retained_intron MGP_C3HHeJ_T0012240.1 MGP_C3HHeJ_G0010344.1 mouse_genomes_project 1 181912004 181912321 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022759.1 MGP_C3HHeJ_G0016421.1 mouse_genomes_project 1 165397013 165459293 - MGP_C3HHeJ_P0022759 Suco protein_coding protein_coding MGP_C3HHeJ_T0022760.1 MGP_C3HHeJ_G0016421.1 mouse_genomes_project 1 165401310 165403633 - Suco protein_coding retained_intron MGP_C3HHeJ_T0022761.1 MGP_C3HHeJ_G0016421.1 mouse_genomes_project 1 165409006 165410161 - Suco protein_coding retained_intron MGP_C3HHeJ_T0022762.1 MGP_C3HHeJ_G0016421.1 mouse_genomes_project 1 165416030 165425636 - Suco protein_coding processed_transcript MGP_C3HHeJ_T0022763.1 MGP_C3HHeJ_G0016421.1 mouse_genomes_project 1 165419673 165425196 - Suco protein_coding retained_intron MGP_C3HHeJ_T0022764.1 MGP_C3HHeJ_G0016421.1 mouse_genomes_project 1 165425690 165436355 - MGP_C3HHeJ_P0022764 Suco protein_coding protein_coding MGP_C3HHeJ_T0022765.1 MGP_C3HHeJ_G0016421.1 mouse_genomes_project 1 165435441 165440061 - MGP_C3HHeJ_P0022765 Suco protein_coding protein_coding MGP_C3HHeJ_T0012215.1 MGP_C3HHeJ_G0010319.1 mouse_genomes_project 1 169185554 169187134 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018587.1 MGP_C3HHeJ_G0015596.1 mouse_genomes_project 1 6662433 6691056 + MGP_C3HHeJ_P0018587 Adhfe1 protein_coding protein_coding MGP_C3HHeJ_T0018588.1 MGP_C3HHeJ_G0015596.1 mouse_genomes_project 1 6662540 6689988 + MGP_C3HHeJ_P0018588 Adhfe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018589.1 MGP_C3HHeJ_G0015596.1 mouse_genomes_project 1 6662577 6668152 + MGP_C3HHeJ_P0018589 Adhfe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018590.1 MGP_C3HHeJ_G0015596.1 mouse_genomes_project 1 6662592 6670033 + MGP_C3HHeJ_P0018590 Adhfe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018591.1 MGP_C3HHeJ_G0015596.1 mouse_genomes_project 1 6662604 6693758 + MGP_C3HHeJ_P0018591 Adhfe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020177.1 MGP_C3HHeJ_G0015899.1 mouse_genomes_project 1 72511771 72529985 + MGP_C3HHeJ_P0020177 Tmem169 protein_coding protein_coding MGP_C3HHeJ_T0020178.1 MGP_C3HHeJ_G0015899.1 mouse_genomes_project 1 72511797 72527639 + MGP_C3HHeJ_P0020178 Tmem169 protein_coding protein_coding MGP_C3HHeJ_T0000750.1 MGP_C3HHeJ_G0000693.1 mouse_genomes_project 1 190498177 190500595 + TEC TEC MGP_C3HHeJ_T0000751.1 MGP_C3HHeJ_G0000694.1 mouse_genomes_project 1 191292572 191292765 - TEC TEC MGP_C3HHeJ_T0000519.1 MGP_C3HHeJ_G0000466.1 mouse_genomes_project 1 87559226 87562216 + TEC TEC MGP_C3HHeJ_T0011790.1 MGP_C3HHeJ_G0009894.1 mouse_genomes_project 1 6660105 6661039 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011980.1 MGP_C3HHeJ_G0010084.1 mouse_genomes_project 1 63242646 63243263 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098642.1 MGP_C3HHeJ_G0036836.1 mouse_genomes_project 1 120453127 120453252 - Gm22710 snRNA snRNA MGP_C3HHeJ_T0018491.1 MGP_C3HHeJ_G0015580.1 mouse_genomes_project 1 1354881 1478334 - MGP_C3HHeJ_P0018491 protein_coding protein_coding MGP_C3HHeJ_T0018492.1 MGP_C3HHeJ_G0015580.1 mouse_genomes_project 1 1405432 1422314 - MGP_C3HHeJ_P0018492 protein_coding protein_coding MGP_C3HHeJ_T0020569.1 MGP_C3HHeJ_G0015966.1 mouse_genomes_project 1 78700154 78813832 + MGP_C3HHeJ_P0020569 Sgpp2 protein_coding protein_coding MGP_C3HHeJ_T0011837.1 MGP_C3HHeJ_G0009941.1 mouse_genomes_project 1 23297505 23298075 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024005.1 MGP_C3HHeJ_G0016710.1 mouse_genomes_project 1 197332891 197339398 + MGP_C3HHeJ_P0024005 Slc30a1 protein_coding protein_coding MGP_C3HHeJ_T0024006.1 MGP_C3HHeJ_G0016710.1 mouse_genomes_project 1 197333380 197335299 + MGP_C3HHeJ_P0024006 Slc30a1 protein_coding protein_coding MGP_C3HHeJ_T0012053.1 MGP_C3HHeJ_G0010157.1 mouse_genomes_project 1 96503532 96504380 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019489.1 MGP_C3HHeJ_G0015776.1 mouse_genomes_project 1 51217507 51346069 + MGP_C3HHeJ_P0019489 Stat4 protein_coding protein_coding MGP_C3HHeJ_T0019490.1 MGP_C3HHeJ_G0015776.1 mouse_genomes_project 1 51244171 51346064 + MGP_C3HHeJ_P0019490 Stat4 protein_coding protein_coding MGP_C3HHeJ_T0019491.1 MGP_C3HHeJ_G0015776.1 mouse_genomes_project 1 51244554 51311894 + Stat4 protein_coding retained_intron MGP_C3HHeJ_T0019492.1 MGP_C3HHeJ_G0015776.1 mouse_genomes_project 1 51344328 51346068 + Stat4 protein_coding retained_intron MGP_C3HHeJ_T0005877.1 MGP_C3HHeJ_G0004918.1 mouse_genomes_project 1 158390074 158412176 - Gm9530 lincRNA lincRNA MGP_C3HHeJ_T0000422.1 MGP_C3HHeJ_G0000369.1 mouse_genomes_project 1 37159870 37160380 + TEC TEC MGP_C3HHeJ_T0024127.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200643132 200694855 - MGP_C3HHeJ_P0024127 Cr2 protein_coding protein_coding MGP_C3HHeJ_T0024128.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200643132 200694854 - MGP_C3HHeJ_P0024128 Cr2 protein_coding protein_coding MGP_C3HHeJ_T0024129.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200643138 200672975 - MGP_C3HHeJ_P0024129 Cr2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024130.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200645640 200667460 - Cr2 protein_coding retained_intron MGP_C3HHeJ_T0024131.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200645982 200664813 - MGP_C3HHeJ_P0024131 Cr2 protein_coding protein_coding MGP_C3HHeJ_T0024132.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200646002 200694787 - MGP_C3HHeJ_P0024132 Cr2 protein_coding protein_coding MGP_C3HHeJ_T0024133.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200647079 200667551 - Cr2 protein_coding retained_intron MGP_C3HHeJ_T0024134.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200648251 200694749 - MGP_C3HHeJ_P0024134 Cr2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0024135.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200676267 200681487 - Cr2 protein_coding processed_transcript MGP_C3HHeJ_T0024136.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200678814 200684238 - MGP_C3HHeJ_P0024136 Cr2 protein_coding protein_coding MGP_C3HHeJ_T0024137.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200678901 200694854 - Cr2 protein_coding processed_transcript MGP_C3HHeJ_T0024138.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200683714 200694854 - Cr2 protein_coding processed_transcript MGP_C3HHeJ_T0000569.1 MGP_C3HHeJ_G0000516.1 mouse_genomes_project 1 125539410 125541471 - TEC TEC MGP_C3HHeJ_T0009416.1 MGP_C3HHeJ_G0007549.1 mouse_genomes_project 1 75242680 75242744 - Mir375 miRNA miRNA MGP_C3HHeJ_T0019447.1 MGP_C3HHeJ_G0015766.1 mouse_genomes_project 1 44617348 44618097 - Gm5269 protein_coding translated_processed_pseudogene MGP_C3HHeJ_T0019448.1 MGP_C3HHeJ_G0015766.1 mouse_genomes_project 1 44617764 44617902 - MGP_C3HHeJ_P0019448 Gm5269 protein_coding protein_coding MGP_C3HHeJ_T0019169.1 MGP_C3HHeJ_G0015709.1 mouse_genomes_project 1 35773595 35781734 + MGP_C3HHeJ_P0019169 Unc50 protein_coding protein_coding MGP_C3HHeJ_T0019170.1 MGP_C3HHeJ_G0015709.1 mouse_genomes_project 1 35773626 35781874 + MGP_C3HHeJ_P0019170 Unc50 protein_coding protein_coding MGP_C3HHeJ_T0019171.1 MGP_C3HHeJ_G0015709.1 mouse_genomes_project 1 35773633 35780229 + MGP_C3HHeJ_P0019171 Unc50 protein_coding protein_coding MGP_C3HHeJ_T0019172.1 MGP_C3HHeJ_G0015709.1 mouse_genomes_project 1 35773642 35780021 + MGP_C3HHeJ_P0019172 Unc50 protein_coding protein_coding MGP_C3HHeJ_T0019173.1 MGP_C3HHeJ_G0015709.1 mouse_genomes_project 1 35773658 35781737 + MGP_C3HHeJ_P0019173 Unc50 protein_coding protein_coding MGP_C3HHeJ_T0019174.1 MGP_C3HHeJ_G0015709.1 mouse_genomes_project 1 35773664 35775011 + MGP_C3HHeJ_P0019174 Unc50 protein_coding protein_coding MGP_C3HHeJ_T0019175.1 MGP_C3HHeJ_G0015709.1 mouse_genomes_project 1 35774800 35780363 + Unc50 protein_coding retained_intron MGP_C3HHeJ_T0009378.1 MGP_C3HHeJ_G0007511.1 mouse_genomes_project 1 9606847 9606968 + Mir6341 miRNA miRNA MGP_C3HHeJ_T0002794.1 MGP_C3HHeJ_G0002646.1 mouse_genomes_project 1 94824262 94825579 + Gm28536 antisense antisense MGP_C3HHeJ_T0021483.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121677394 121857124 - MGP_C3HHeJ_P0021483 Ptpn4 protein_coding protein_coding MGP_C3HHeJ_T0021484.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121682971 121712360 - MGP_C3HHeJ_P0021484 Ptpn4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021485.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121714381 121856858 - MGP_C3HHeJ_P0021485 Ptpn4 protein_coding protein_coding MGP_C3HHeJ_T0021486.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121717404 121766216 - MGP_C3HHeJ_P0021486 Ptpn4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021487.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121729752 121739631 - Ptpn4 protein_coding retained_intron MGP_C3HHeJ_T0021488.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121750081 121801395 - MGP_C3HHeJ_P0021488 Ptpn4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021489.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121768184 121821911 - MGP_C3HHeJ_P0021489 Ptpn4 protein_coding protein_coding MGP_C3HHeJ_T0021490.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121782923 121856582 - MGP_C3HHeJ_P0021490 Ptpn4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021491.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121783263 121856582 - MGP_C3HHeJ_P0021491 Ptpn4 protein_coding protein_coding MGP_C3HHeJ_T0021492.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121790890 121821931 - MGP_C3HHeJ_P0021492 Ptpn4 protein_coding protein_coding MGP_C3HHeJ_T0021493.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121790950 121856510 - MGP_C3HHeJ_P0021493 Ptpn4 protein_coding protein_coding MGP_C3HHeJ_T0024030.1 MGP_C3HHeJ_G0016714.1 mouse_genomes_project 1 197577468 197919335 + MGP_C3HHeJ_P0024030 Kcnh1 protein_coding protein_coding MGP_C3HHeJ_T0024031.1 MGP_C3HHeJ_G0016714.1 mouse_genomes_project 1 197577468 197919335 + MGP_C3HHeJ_P0024031 Kcnh1 protein_coding protein_coding MGP_C3HHeJ_T0024032.1 MGP_C3HHeJ_G0016714.1 mouse_genomes_project 1 197834649 197919335 + MGP_C3HHeJ_P0024032 Kcnh1 protein_coding protein_coding MGP_C3HHeJ_T0023757.1 MGP_C3HHeJ_G0016660.1 mouse_genomes_project 1 188101231 188121320 + MGP_C3HHeJ_P0023757 Tlr5 protein_coding protein_coding MGP_C3HHeJ_T0023758.1 MGP_C3HHeJ_G0016660.1 mouse_genomes_project 1 188101231 188121673 + MGP_C3HHeJ_P0023758 Tlr5 protein_coding protein_coding MGP_C3HHeJ_T0023759.1 MGP_C3HHeJ_G0016660.1 mouse_genomes_project 1 188101265 188116716 + Tlr5 protein_coding processed_transcript MGP_C3HHeJ_T0023760.1 MGP_C3HHeJ_G0016660.1 mouse_genomes_project 1 188101271 188116480 + Tlr5 protein_coding processed_transcript MGP_C3HHeJ_T0023761.1 MGP_C3HHeJ_G0016660.1 mouse_genomes_project 1 188117804 188121628 + MGP_C3HHeJ_P0023761 Tlr5 protein_coding protein_coding MGP_C3HHeJ_T0023529.1 MGP_C3HHeJ_G0016613.1 mouse_genomes_project 1 183046219 183118629 + MGP_C3HHeJ_P0023529 Desi2 protein_coding protein_coding MGP_C3HHeJ_T0023530.1 MGP_C3HHeJ_G0016613.1 mouse_genomes_project 1 183046334 183126327 + MGP_C3HHeJ_P0023530 Desi2 protein_coding protein_coding MGP_C3HHeJ_T0023531.1 MGP_C3HHeJ_G0016613.1 mouse_genomes_project 1 183047091 183117066 + MGP_C3HHeJ_P0023531 Desi2 protein_coding protein_coding MGP_C3HHeJ_T0023532.1 MGP_C3HHeJ_G0016613.1 mouse_genomes_project 1 183125128 183126321 + MGP_C3HHeJ_P0023532 Desi2 protein_coding protein_coding MGP_C3HHeJ_T0005585.1 MGP_C3HHeJ_G0004692.1 mouse_genomes_project 1 18303007 18306004 + Gm28065 lincRNA lincRNA MGP_C3HHeJ_T0000448.1 MGP_C3HHeJ_G0000395.1 mouse_genomes_project 1 56551819 56553657 + TEC TEC MGP_C3HHeJ_T0101581.1 MGP_C3HHeJ_G0039547.1 mouse_genomes_project 1 119765369 119819091 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0000533.1 MGP_C3HHeJ_G0000480.1 mouse_genomes_project 1 91559501 91562299 + TEC TEC MGP_C3HHeJ_T0019407.1 MGP_C3HHeJ_G0015759.1 mouse_genomes_project 1 42783894 42791556 + MGP_C3HHeJ_P0019407 protein_coding protein_coding MGP_C3HHeJ_T0019408.1 MGP_C3HHeJ_G0015759.1 mouse_genomes_project 1 42783937 42791319 + protein_coding processed_transcript MGP_C3HHeJ_T0019409.1 MGP_C3HHeJ_G0015759.1 mouse_genomes_project 1 42784445 42791337 + protein_coding processed_transcript MGP_C3HHeJ_T0019410.1 MGP_C3HHeJ_G0015759.1 mouse_genomes_project 1 42784561 42812747 + MGP_C3HHeJ_P0019410 protein_coding unknown_likely_coding MGP_C3HHeJ_T0019411.1 MGP_C3HHeJ_G0015759.1 mouse_genomes_project 1 42784966 42791397 + MGP_C3HHeJ_P0019411 protein_coding protein_coding MGP_C3HHeJ_T0021268.1 MGP_C3HHeJ_G0016117.1 mouse_genomes_project 1 95025983 95027532 + MGP_C3HHeJ_P0021268 D2hgdh protein_coding protein_coding MGP_C3HHeJ_T0021269.1 MGP_C3HHeJ_G0016117.1 mouse_genomes_project 1 95026348 95216356 + MGP_C3HHeJ_P0021269 D2hgdh protein_coding protein_coding MGP_C3HHeJ_T0021270.1 MGP_C3HHeJ_G0016117.1 mouse_genomes_project 1 95027356 95031098 + D2hgdh protein_coding processed_transcript MGP_C3HHeJ_T0021271.1 MGP_C3HHeJ_G0016117.1 mouse_genomes_project 1 95027358 95041456 + MGP_C3HHeJ_P0021271 D2hgdh protein_coding protein_coding MGP_C3HHeJ_T0021272.1 MGP_C3HHeJ_G0016117.1 mouse_genomes_project 1 95027635 95031537 + D2hgdh protein_coding processed_transcript MGP_C3HHeJ_T0021273.1 MGP_C3HHeJ_G0016117.1 mouse_genomes_project 1 95030887 95041366 + MGP_C3HHeJ_P0021273 D2hgdh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021274.1 MGP_C3HHeJ_G0016117.1 mouse_genomes_project 1 95195045 95203836 + MGP_C3HHeJ_P0021274 D2hgdh protein_coding protein_coding MGP_C3HHeJ_T0011854.1 MGP_C3HHeJ_G0009958.1 mouse_genomes_project 1 29309495 29310054 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000374.1 MGP_C3HHeJ_G0000322.1 mouse_genomes_project 1 22951971 22955098 - TEC TEC MGP_C3HHeJ_T0020826.1 MGP_C3HHeJ_G0016022.1 mouse_genomes_project 1 87932623 87934799 + Akp3 protein_coding retained_intron MGP_C3HHeJ_T0020827.1 MGP_C3HHeJ_G0016022.1 mouse_genomes_project 1 87932658 87935563 + MGP_C3HHeJ_P0020827 Akp3 protein_coding protein_coding MGP_C3HHeJ_T0005837.1 MGP_C3HHeJ_G0004887.1 mouse_genomes_project 1 138856150 138858957 + A430034D21Rik lincRNA lincRNA MGP_C3HHeJ_T0019900.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60231060 60301550 + MGP_C3HHeJ_P0019900 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0019901.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60231136 60301550 + MGP_C3HHeJ_P0019901 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0019902.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60231136 60297480 + MGP_C3HHeJ_P0019902 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0019903.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60231175 60299910 + MGP_C3HHeJ_P0019903 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0019904.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60231222 60265064 + Abi2 protein_coding retained_intron MGP_C3HHeJ_T0019905.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60231236 60267684 + MGP_C3HHeJ_P0019905 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0019906.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60231244 60297550 + MGP_C3HHeJ_P0019906 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0019907.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60231249 60254688 + Abi2 protein_coding retained_intron MGP_C3HHeJ_T0019908.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60257265 60298150 + MGP_C3HHeJ_P0019908 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0019909.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60257389 60297312 + MGP_C3HHeJ_P0019909 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0019910.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60257394 60297475 + MGP_C3HHeJ_P0019910 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0019911.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60259124 60297696 + MGP_C3HHeJ_P0019911 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0012189.1 MGP_C3HHeJ_G0010293.1 mouse_genomes_project 1 156541445 156542457 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009438.1 MGP_C3HHeJ_G0007571.1 mouse_genomes_project 1 107211563 107211645 + Gm22426 miRNA miRNA MGP_C3HHeJ_T0099886.1 MGP_C3HHeJ_G0038080.1 mouse_genomes_project 1 137032499 137032625 + Gm25612 snoRNA snoRNA MGP_C3HHeJ_T0023157.1 MGP_C3HHeJ_G0016513.1 mouse_genomes_project 1 175148306 175148998 - Ndufs2 protein_coding retained_intron MGP_C3HHeJ_T0023158.1 MGP_C3HHeJ_G0016513.1 mouse_genomes_project 1 175148306 175160617 - Ndufs2 protein_coding retained_intron MGP_C3HHeJ_T0023159.1 MGP_C3HHeJ_G0016513.1 mouse_genomes_project 1 175148306 175150984 - Ndufs2 protein_coding processed_transcript MGP_C3HHeJ_T0023160.1 MGP_C3HHeJ_G0016513.1 mouse_genomes_project 1 175148306 175160617 - MGP_C3HHeJ_P0023160 Ndufs2 protein_coding protein_coding MGP_C3HHeJ_T0023161.1 MGP_C3HHeJ_G0016513.1 mouse_genomes_project 1 175148306 175160617 - MGP_C3HHeJ_P0023161 Ndufs2 protein_coding protein_coding MGP_C3HHeJ_T0023162.1 MGP_C3HHeJ_G0016513.1 mouse_genomes_project 1 175150600 175153500 - Ndufs2 protein_coding processed_transcript MGP_C3HHeJ_T0023163.1 MGP_C3HHeJ_G0016513.1 mouse_genomes_project 1 175151975 175164987 - MGP_C3HHeJ_P0023163 Ndufs2 protein_coding protein_coding MGP_C3HHeJ_T0023164.1 MGP_C3HHeJ_G0016513.1 mouse_genomes_project 1 175152193 175165124 - MGP_C3HHeJ_P0023164 Ndufs2 protein_coding protein_coding MGP_C3HHeJ_T0022711.1 MGP_C3HHeJ_G0016412.1 mouse_genomes_project 1 164555333 164587810 - MGP_C3HHeJ_P0022711 Zbtb37 protein_coding protein_coding MGP_C3HHeJ_T0022712.1 MGP_C3HHeJ_G0016412.1 mouse_genomes_project 1 164561196 164587810 - MGP_C3HHeJ_P0022712 Zbtb37 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022713.1 MGP_C3HHeJ_G0016412.1 mouse_genomes_project 1 164561202 164587795 - MGP_C3HHeJ_P0022713 Zbtb37 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022714.1 MGP_C3HHeJ_G0016412.1 mouse_genomes_project 1 164570185 164587223 - MGP_C3HHeJ_P0022714 Zbtb37 protein_coding protein_coding MGP_C3HHeJ_T0022715.1 MGP_C3HHeJ_G0016412.1 mouse_genomes_project 1 164571689 164587809 - MGP_C3HHeJ_P0022715 Zbtb37 protein_coding protein_coding MGP_C3HHeJ_T0022716.1 MGP_C3HHeJ_G0016412.1 mouse_genomes_project 1 164571853 164587248 - MGP_C3HHeJ_P0022716 Zbtb37 protein_coding protein_coding MGP_C3HHeJ_T0022717.1 MGP_C3HHeJ_G0016412.1 mouse_genomes_project 1 164585399 164587777 - MGP_C3HHeJ_P0022717 Zbtb37 protein_coding protein_coding MGP_C3HHeJ_T0002872.1 MGP_C3HHeJ_G0002703.1 mouse_genomes_project 1 168459009 168470340 - Gm32569 antisense antisense MGP_C3HHeJ_T0002873.1 MGP_C3HHeJ_G0002703.1 mouse_genomes_project 1 168459135 168558459 - Gm32569 antisense antisense MGP_C3HHeJ_T0019587.1 MGP_C3HHeJ_G0015793.1 mouse_genomes_project 1 53239163 53636259 - MGP_C3HHeJ_P0019587 Hecw2 protein_coding protein_coding MGP_C3HHeJ_T0019588.1 MGP_C3HHeJ_G0015793.1 mouse_genomes_project 1 53239169 53637245 - MGP_C3HHeJ_P0019588 Hecw2 protein_coding protein_coding MGP_C3HHeJ_T0019589.1 MGP_C3HHeJ_G0015793.1 mouse_genomes_project 1 53266530 53275010 - Hecw2 protein_coding processed_transcript MGP_C3HHeJ_T0019590.1 MGP_C3HHeJ_G0015793.1 mouse_genomes_project 1 53272855 53300314 - Hecw2 protein_coding processed_transcript MGP_C3HHeJ_T0019591.1 MGP_C3HHeJ_G0015793.1 mouse_genomes_project 1 53367187 53637245 - MGP_C3HHeJ_P0019591 Hecw2 protein_coding protein_coding MGP_C3HHeJ_T0019592.1 MGP_C3HHeJ_G0015793.1 mouse_genomes_project 1 53377971 53637379 - Hecw2 protein_coding retained_intron MGP_C3HHeJ_T0018836.1 MGP_C3HHeJ_G0015645.1 mouse_genomes_project 1 18423129 18427036 + Efhc1 protein_coding processed_transcript MGP_C3HHeJ_T0018837.1 MGP_C3HHeJ_G0015645.1 mouse_genomes_project 1 18423191 18467410 + MGP_C3HHeJ_P0018837 Efhc1 protein_coding protein_coding MGP_C3HHeJ_T0024040.1 MGP_C3HHeJ_G0016716.1 mouse_genomes_project 1 198255540 198266809 - MGP_C3HHeJ_P0024040 Sertad4 protein_coding protein_coding MGP_C3HHeJ_T0024041.1 MGP_C3HHeJ_G0016716.1 mouse_genomes_project 1 198255541 198262800 - MGP_C3HHeJ_P0024041 Sertad4 protein_coding protein_coding MGP_C3HHeJ_T0024042.1 MGP_C3HHeJ_G0016716.1 mouse_genomes_project 1 198258115 198262800 - MGP_C3HHeJ_P0024042 Sertad4 protein_coding protein_coding MGP_C3HHeJ_T0024043.1 MGP_C3HHeJ_G0016716.1 mouse_genomes_project 1 198265254 198266539 - Sertad4 protein_coding processed_transcript MGP_C3HHeJ_T0020615.1 MGP_C3HHeJ_G0015977.1 mouse_genomes_project 1 80631667 80648900 - MGP_C3HHeJ_P0020615 Fam124b protein_coding protein_coding MGP_C3HHeJ_T0020616.1 MGP_C3HHeJ_G0015977.1 mouse_genomes_project 1 80633287 80653430 - Fam124b protein_coding processed_transcript MGP_C3HHeJ_T0000538.1 MGP_C3HHeJ_G0000485.1 mouse_genomes_project 1 93113615 93116121 - TEC TEC MGP_C3HHeJ_T0020991.1 MGP_C3HHeJ_G0016061.1 mouse_genomes_project 1 91642407 91652050 + Cops8 protein_coding retained_intron MGP_C3HHeJ_T0020992.1 MGP_C3HHeJ_G0016061.1 mouse_genomes_project 1 91642409 91650393 + Cops8 protein_coding retained_intron MGP_C3HHeJ_T0020993.1 MGP_C3HHeJ_G0016061.1 mouse_genomes_project 1 91642430 91644587 + Cops8 protein_coding retained_intron MGP_C3HHeJ_T0020994.1 MGP_C3HHeJ_G0016061.1 mouse_genomes_project 1 91642430 91649964 + Cops8 protein_coding processed_transcript MGP_C3HHeJ_T0020995.1 MGP_C3HHeJ_G0016061.1 mouse_genomes_project 1 91642459 91651107 + MGP_C3HHeJ_P0020995 Cops8 protein_coding protein_coding MGP_C3HHeJ_T0020996.1 MGP_C3HHeJ_G0016061.1 mouse_genomes_project 1 91642481 91652267 + MGP_C3HHeJ_P0020996 Cops8 protein_coding protein_coding MGP_C3HHeJ_T0020997.1 MGP_C3HHeJ_G0016061.1 mouse_genomes_project 1 91648580 91650255 + Cops8 protein_coding retained_intron MGP_C3HHeJ_T0020998.1 MGP_C3HHeJ_G0016061.1 mouse_genomes_project 1 91650272 91651320 + Cops8 protein_coding retained_intron MGP_C3HHeJ_T0000521.1 MGP_C3HHeJ_G0000468.1 mouse_genomes_project 1 87593266 87596050 + TEC TEC MGP_C3HHeJ_T0020349.1 MGP_C3HHeJ_G0015935.1 mouse_genomes_project 1 75229351 75232538 - MGP_C3HHeJ_P0020349 Cryba2 protein_coding protein_coding MGP_C3HHeJ_T0020350.1 MGP_C3HHeJ_G0015935.1 mouse_genomes_project 1 75229952 75232287 - MGP_C3HHeJ_P0020350 Cryba2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011798.1 MGP_C3HHeJ_G0009902.1 mouse_genomes_project 1 9750089 9750978 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020155.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71789026 71864659 - MGP_C3HHeJ_P0020155 Fn1 protein_coding protein_coding MGP_C3HHeJ_T0020156.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71789029 71864659 - MGP_C3HHeJ_P0020156 Fn1 protein_coding protein_coding MGP_C3HHeJ_T0020157.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71789029 71864659 - MGP_C3HHeJ_P0020157 Fn1 protein_coding protein_coding MGP_C3HHeJ_T0020158.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71789029 71864659 - MGP_C3HHeJ_P0020158 Fn1 protein_coding protein_coding MGP_C3HHeJ_T0020159.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71789030 71864662 - MGP_C3HHeJ_P0020159 Fn1 protein_coding protein_coding MGP_C3HHeJ_T0020160.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71789030 71864659 - MGP_C3HHeJ_P0020160 Fn1 protein_coding protein_coding MGP_C3HHeJ_T0020161.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71789030 71864687 - MGP_C3HHeJ_P0020161 Fn1 protein_coding protein_coding MGP_C3HHeJ_T0020162.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71789032 71813102 - Fn1 protein_coding retained_intron MGP_C3HHeJ_T0020163.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71790367 71794578 - Fn1 protein_coding retained_intron MGP_C3HHeJ_T0020164.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71793603 71803903 - MGP_C3HHeJ_P0020164 Fn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020165.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71801894 71805911 - MGP_C3HHeJ_P0020165 Fn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020166.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71803921 71806379 - Fn1 protein_coding retained_intron MGP_C3HHeJ_T0020167.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71807631 71829134 - Fn1 protein_coding retained_intron MGP_C3HHeJ_T0020168.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71834244 71847016 - MGP_C3HHeJ_P0020168 Fn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020169.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71848552 71864648 - MGP_C3HHeJ_P0020169 Fn1 protein_coding protein_coding MGP_C3HHeJ_T0020170.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71850204 71864659 - Fn1 protein_coding retained_intron MGP_C3HHeJ_T0020171.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71851370 71864659 - MGP_C3HHeJ_P0020171 Fn1 protein_coding protein_coding MGP_C3HHeJ_T0002786.1 MGP_C3HHeJ_G0002638.1 mouse_genomes_project 1 92376357 92394361 - Gm17090 antisense antisense MGP_C3HHeJ_T0023685.1 MGP_C3HHeJ_G0016645.1 mouse_genomes_project 1 186183047 186202291 + MGP_C3HHeJ_P0023685 Cnih4 protein_coding protein_coding MGP_C3HHeJ_T0023686.1 MGP_C3HHeJ_G0016645.1 mouse_genomes_project 1 186183109 186202291 + MGP_C3HHeJ_P0023686 Cnih4 protein_coding protein_coding MGP_C3HHeJ_T0023687.1 MGP_C3HHeJ_G0016645.1 mouse_genomes_project 1 186186854 186199678 + Cnih4 protein_coding processed_transcript MGP_C3HHeJ_T0023688.1 MGP_C3HHeJ_G0016645.1 mouse_genomes_project 1 186187836 186199646 + Cnih4 protein_coding retained_intron MGP_C3HHeJ_T0020304.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74921244 74929617 - MGP_C3HHeJ_P0020304 Rnf25 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020305.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74921244 74929642 - MGP_C3HHeJ_P0020305 Rnf25 protein_coding protein_coding MGP_C3HHeJ_T0020306.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74921249 74929622 - MGP_C3HHeJ_P0020306 Rnf25 protein_coding protein_coding MGP_C3HHeJ_T0020307.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74921718 74922298 - Rnf25 protein_coding retained_intron MGP_C3HHeJ_T0020308.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74922705 74928809 - MGP_C3HHeJ_P0020308 Rnf25 protein_coding protein_coding MGP_C3HHeJ_T0020309.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74923381 74928844 - MGP_C3HHeJ_P0020309 Rnf25 protein_coding protein_coding MGP_C3HHeJ_T0020310.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74925631 74926014 - Rnf25 protein_coding retained_intron MGP_C3HHeJ_T0020311.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74925779 74929590 - MGP_C3HHeJ_P0020311 Rnf25 protein_coding protein_coding MGP_C3HHeJ_T0020312.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74925966 74929639 - Rnf25 protein_coding retained_intron MGP_C3HHeJ_T0020313.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74926149 74929610 - MGP_C3HHeJ_P0020313 Rnf25 protein_coding protein_coding MGP_C3HHeJ_T0022940.1 MGP_C3HHeJ_G0016461.1 mouse_genomes_project 1 169280420 169330469 - MGP_C3HHeJ_P0022940 Mpzl1 protein_coding protein_coding MGP_C3HHeJ_T0022941.1 MGP_C3HHeJ_G0016461.1 mouse_genomes_project 1 169281558 169292911 - MGP_C3HHeJ_P0022941 Mpzl1 protein_coding protein_coding MGP_C3HHeJ_T0022942.1 MGP_C3HHeJ_G0016461.1 mouse_genomes_project 1 169281597 169330589 - MGP_C3HHeJ_P0022942 Mpzl1 protein_coding protein_coding MGP_C3HHeJ_T0022943.1 MGP_C3HHeJ_G0016461.1 mouse_genomes_project 1 169288930 169297732 - Mpzl1 protein_coding processed_transcript MGP_C3HHeJ_T0022944.1 MGP_C3HHeJ_G0016461.1 mouse_genomes_project 1 169291343 169292867 - Mpzl1 protein_coding retained_intron MGP_C3HHeJ_T0022945.1 MGP_C3HHeJ_G0016461.1 mouse_genomes_project 1 169292757 169306310 - Mpzl1 protein_coding processed_transcript MGP_C3HHeJ_T0022946.1 MGP_C3HHeJ_G0016461.1 mouse_genomes_project 1 169292825 169330518 - MGP_C3HHeJ_P0022946 Mpzl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022947.1 MGP_C3HHeJ_G0016461.1 mouse_genomes_project 1 169295551 169330162 - Mpzl1 protein_coding processed_transcript MGP_C3HHeJ_T0099842.1 MGP_C3HHeJ_G0038036.1 mouse_genomes_project 1 42560999 42561124 + Gm26352 snoRNA snoRNA MGP_C3HHeJ_T0022866.1 MGP_C3HHeJ_G0016442.1 mouse_genomes_project 1 167616983 167619309 + MGP_C3HHeJ_P0022866 Mettl18 protein_coding protein_coding MGP_C3HHeJ_T0022867.1 MGP_C3HHeJ_G0016442.1 mouse_genomes_project 1 167616983 167619309 + MGP_C3HHeJ_P0022867 Mettl18 protein_coding protein_coding MGP_C3HHeJ_T0005689.1 MGP_C3HHeJ_G0004768.1 mouse_genomes_project 1 64539619 64547872 + Gm28982 lincRNA lincRNA MGP_C3HHeJ_T0002764.1 MGP_C3HHeJ_G0002621.1 mouse_genomes_project 1 73248890 73291183 + 1700027A15Rik antisense antisense MGP_C3HHeJ_T0002765.1 MGP_C3HHeJ_G0002621.1 mouse_genomes_project 1 73281857 73291966 + 1700027A15Rik antisense antisense MGP_C3HHeJ_T0002766.1 MGP_C3HHeJ_G0002621.1 mouse_genomes_project 1 73282202 73291957 + 1700027A15Rik antisense antisense MGP_C3HHeJ_T0002767.1 MGP_C3HHeJ_G0002621.1 mouse_genomes_project 1 73289012 73291958 + 1700027A15Rik antisense antisense MGP_C3HHeJ_T0002768.1 MGP_C3HHeJ_G0002621.1 mouse_genomes_project 1 73291027 73291966 + 1700027A15Rik antisense antisense MGP_C3HHeJ_T0012057.1 MGP_C3HHeJ_G0010161.1 mouse_genomes_project 1 99619862 99620269 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019703.1 MGP_C3HHeJ_G0015814.1 mouse_genomes_project 1 57592708 57624118 + MGP_C3HHeJ_P0019703 Sgol2a protein_coding protein_coding MGP_C3HHeJ_T0019704.1 MGP_C3HHeJ_G0015814.1 mouse_genomes_project 1 57620934 57624117 + Sgol2a protein_coding retained_intron MGP_C3HHeJ_T0022178.1 MGP_C3HHeJ_G0016315.1 mouse_genomes_project 1 141000275 141016003 + MGP_C3HHeJ_P0022178 Atp6v1g3 protein_coding protein_coding MGP_C3HHeJ_T0005703.1 MGP_C3HHeJ_G0004778.1 mouse_genomes_project 1 72212690 72268787 - 4930556G22Rik lincRNA lincRNA MGP_C3HHeJ_T0020950.1 MGP_C3HHeJ_G0016046.1 mouse_genomes_project 1 89100644 89122337 + MGP_C3HHeJ_P0020950 Ugt1a2 protein_coding protein_coding MGP_C3HHeJ_T0011988.1 MGP_C3HHeJ_G0010092.1 mouse_genomes_project 1 65375057 65375379 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023427.1 MGP_C3HHeJ_G0016585.1 mouse_genomes_project 1 178672377 178678723 + MGP_C3HHeJ_P0023427 Olfr427 protein_coding protein_coding MGP_C3HHeJ_T0000572.1 MGP_C3HHeJ_G0000519.1 mouse_genomes_project 1 125714877 125718639 - TEC TEC MGP_C3HHeJ_T0099898.1 MGP_C3HHeJ_G0038092.1 mouse_genomes_project 1 164588354 164588434 + Gm26224 snoRNA snoRNA MGP_C3HHeJ_T0023847.1 MGP_C3HHeJ_G0016679.1 mouse_genomes_project 1 191273300 191297704 - MGP_C3HHeJ_P0023847 Lyplal1 protein_coding protein_coding MGP_C3HHeJ_T0023848.1 MGP_C3HHeJ_G0016679.1 mouse_genomes_project 1 191274102 191297682 - Lyplal1 protein_coding processed_transcript MGP_C3HHeJ_T0005729.1 MGP_C3HHeJ_G0004797.1 mouse_genomes_project 1 79240388 79241783 + Gm29187 lincRNA lincRNA MGP_C3HHeJ_T0019066.1 MGP_C3HHeJ_G0015692.1 mouse_genomes_project 1 34597498 34636112 - MGP_C3HHeJ_P0019066 Kansl3 protein_coding protein_coding MGP_C3HHeJ_T0019067.1 MGP_C3HHeJ_G0015692.1 mouse_genomes_project 1 34597498 34636088 - MGP_C3HHeJ_P0019067 Kansl3 protein_coding protein_coding MGP_C3HHeJ_T0019068.1 MGP_C3HHeJ_G0015692.1 mouse_genomes_project 1 34599341 34636102 - MGP_C3HHeJ_P0019068 Kansl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019069.1 MGP_C3HHeJ_G0015692.1 mouse_genomes_project 1 34599341 34634946 - MGP_C3HHeJ_P0019069 Kansl3 protein_coding protein_coding MGP_C3HHeJ_T0019070.1 MGP_C3HHeJ_G0015692.1 mouse_genomes_project 1 34620413 34634973 - MGP_C3HHeJ_P0019070 Kansl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019071.1 MGP_C3HHeJ_G0015692.1 mouse_genomes_project 1 34623817 34636086 - MGP_C3HHeJ_P0019071 Kansl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019072.1 MGP_C3HHeJ_G0015692.1 mouse_genomes_project 1 34632557 34634973 - MGP_C3HHeJ_P0019072 Kansl3 protein_coding protein_coding MGP_C3HHeJ_T0019073.1 MGP_C3HHeJ_G0015692.1 mouse_genomes_project 1 34632840 34636088 - Kansl3 protein_coding retained_intron MGP_C3HHeJ_T0019074.1 MGP_C3HHeJ_G0015692.1 mouse_genomes_project 1 34634897 34636033 - MGP_C3HHeJ_P0019074 Kansl3 protein_coding protein_coding MGP_C3HHeJ_T0022207.1 MGP_C3HHeJ_G0016321.1 mouse_genomes_project 1 142161808 142181378 + MGP_C3HHeJ_P0022207 Zbtb41 protein_coding protein_coding MGP_C3HHeJ_T0022208.1 MGP_C3HHeJ_G0016321.1 mouse_genomes_project 1 142161902 142192526 + MGP_C3HHeJ_P0022208 Zbtb41 protein_coding protein_coding MGP_C3HHeJ_T0022209.1 MGP_C3HHeJ_G0016321.1 mouse_genomes_project 1 142163174 142188704 + MGP_C3HHeJ_P0022209 Zbtb41 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023740.1 MGP_C3HHeJ_G0016655.1 mouse_genomes_project 1 187523397 187577574 + MGP_C3HHeJ_P0023740 Trp53bp2 protein_coding protein_coding MGP_C3HHeJ_T0023741.1 MGP_C3HHeJ_G0016655.1 mouse_genomes_project 1 187556336 187576924 + Trp53bp2 protein_coding retained_intron MGP_C3HHeJ_T0023742.1 MGP_C3HHeJ_G0016655.1 mouse_genomes_project 1 187558992 187563829 + MGP_C3HHeJ_P0023742 Trp53bp2 protein_coding protein_coding MGP_C3HHeJ_T0000493.1 MGP_C3HHeJ_G0000440.1 mouse_genomes_project 1 78766311 78767120 + TEC TEC MGP_C3HHeJ_T0009389.1 MGP_C3HHeJ_G0007522.1 mouse_genomes_project 1 32290557 32290630 + Mir6896 miRNA miRNA MGP_C3HHeJ_T0020592.1 MGP_C3HHeJ_G0015971.1 mouse_genomes_project 1 79235873 79239164 + MGP_C3HHeJ_P0020592 Kcne4 protein_coding protein_coding MGP_C3HHeJ_T0020593.1 MGP_C3HHeJ_G0015971.1 mouse_genomes_project 1 79236042 79239164 + MGP_C3HHeJ_P0020593 Kcne4 protein_coding protein_coding MGP_C3HHeJ_T0012151.1 MGP_C3HHeJ_G0010255.1 mouse_genomes_project 1 141102917 141103068 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020314.1 MGP_C3HHeJ_G0015927.1 mouse_genomes_project 1 74929689 74964427 + MGP_C3HHeJ_P0020314 Stk36 protein_coding protein_coding MGP_C3HHeJ_T0020315.1 MGP_C3HHeJ_G0015927.1 mouse_genomes_project 1 74929724 74964424 + Stk36 protein_coding retained_intron MGP_C3HHeJ_T0020316.1 MGP_C3HHeJ_G0015927.1 mouse_genomes_project 1 74929747 74961633 + MGP_C3HHeJ_P0020316 Stk36 protein_coding protein_coding MGP_C3HHeJ_T0020317.1 MGP_C3HHeJ_G0015927.1 mouse_genomes_project 1 74929758 74934391 + MGP_C3HHeJ_P0020317 Stk36 protein_coding protein_coding MGP_C3HHeJ_T0020318.1 MGP_C3HHeJ_G0015927.1 mouse_genomes_project 1 74929883 74963576 + MGP_C3HHeJ_P0020318 Stk36 protein_coding protein_coding MGP_C3HHeJ_T0020319.1 MGP_C3HHeJ_G0015927.1 mouse_genomes_project 1 74932075 74937266 + MGP_C3HHeJ_P0020319 Stk36 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020320.1 MGP_C3HHeJ_G0015927.1 mouse_genomes_project 1 74948267 74951829 + Stk36 protein_coding retained_intron MGP_C3HHeJ_T0020321.1 MGP_C3HHeJ_G0015927.1 mouse_genomes_project 1 74948744 74963619 + Stk36 protein_coding processed_transcript MGP_C3HHeJ_T0020322.1 MGP_C3HHeJ_G0015927.1 mouse_genomes_project 1 74952382 74964427 + Stk36 protein_coding retained_intron MGP_C3HHeJ_T0019547.1 MGP_C3HHeJ_G0015783.1 mouse_genomes_project 1 52082812 52086772 + Hibch protein_coding retained_intron MGP_C3HHeJ_T0019548.1 MGP_C3HHeJ_G0015783.1 mouse_genomes_project 1 52082927 52120985 + Hibch protein_coding retained_intron MGP_C3HHeJ_T0019549.1 MGP_C3HHeJ_G0015783.1 mouse_genomes_project 1 52082993 52155750 + MGP_C3HHeJ_P0019549 Hibch protein_coding protein_coding MGP_C3HHeJ_T0019550.1 MGP_C3HHeJ_G0015783.1 mouse_genomes_project 1 52101798 52135528 + Hibch protein_coding processed_transcript MGP_C3HHeJ_T0019551.1 MGP_C3HHeJ_G0015783.1 mouse_genomes_project 1 52136840 52149198 + Hibch protein_coding retained_intron MGP_C3HHeJ_T0000362.1 MGP_C3HHeJ_G0000312.1 mouse_genomes_project 1 14015139 14018119 + TEC TEC MGP_C3HHeJ_T0012237.1 MGP_C3HHeJ_G0010341.1 mouse_genomes_project 1 181270026 181270684 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005812.1 MGP_C3HHeJ_G0004866.1 mouse_genomes_project 1 123140849 123174484 + Celrr lincRNA lincRNA MGP_C3HHeJ_T0005813.1 MGP_C3HHeJ_G0004866.1 mouse_genomes_project 1 123140915 123171214 + Celrr lincRNA lincRNA MGP_C3HHeJ_T0005814.1 MGP_C3HHeJ_G0004866.1 mouse_genomes_project 1 123140918 123234627 + Celrr lincRNA lincRNA MGP_C3HHeJ_T0005815.1 MGP_C3HHeJ_G0004866.1 mouse_genomes_project 1 123140973 123142377 + Celrr lincRNA lincRNA MGP_C3HHeJ_T0000596.1 MGP_C3HHeJ_G0000543.1 mouse_genomes_project 1 133474393 133480262 - TEC TEC MGP_C3HHeJ_T0005728.1 MGP_C3HHeJ_G0004796.1 mouse_genomes_project 1 79211813 79675312 - lincRNA lincRNA MGP_C3HHeJ_T0099908.1 MGP_C3HHeJ_G0038102.1 mouse_genomes_project 1 166652364 166652498 - Gm22671 snoRNA snoRNA MGP_C3HHeJ_T0023032.1 MGP_C3HHeJ_G0016480.1 mouse_genomes_project 1 171207574 171228546 - MGP_C3HHeJ_P0023032 Lrrc52 protein_coding protein_coding MGP_C3HHeJ_T0021802.1 MGP_C3HHeJ_G0016238.1 mouse_genomes_project 1 134737604 134746335 + MGP_C3HHeJ_P0021802 Klhdc8a protein_coding protein_coding MGP_C3HHeJ_T0002845.1 MGP_C3HHeJ_G0002682.1 mouse_genomes_project 1 154512601 154517047 - Gm10138 antisense antisense MGP_C3HHeJ_T0002846.1 MGP_C3HHeJ_G0002682.1 mouse_genomes_project 1 154515702 154518202 - Gm10138 antisense antisense MGP_C3HHeJ_T0002847.1 MGP_C3HHeJ_G0002682.1 mouse_genomes_project 1 154517333 154517707 - Gm10138 antisense pseudogene MGP_C3HHeJ_T0005771.1 MGP_C3HHeJ_G0004834.1 mouse_genomes_project 1 96021829 96027199 + 4930440C22Rik lincRNA lincRNA MGP_C3HHeJ_T0005772.1 MGP_C3HHeJ_G0004834.1 mouse_genomes_project 1 96022188 96027219 + 4930440C22Rik lincRNA lincRNA MGP_C3HHeJ_T0099855.1 MGP_C3HHeJ_G0038049.1 mouse_genomes_project 1 63038059 63038094 + Gm26457 snoRNA snoRNA MGP_C3HHeJ_T0012105.1 MGP_C3HHeJ_G0010209.1 mouse_genomes_project 1 119589845 119590319 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023879.1 MGP_C3HHeJ_G0016686.1 mouse_genomes_project 1 193511450 193606519 + protein_coding retained_intron MGP_C3HHeJ_T0023880.1 MGP_C3HHeJ_G0016686.1 mouse_genomes_project 1 193511462 193702162 + protein_coding retained_intron MGP_C3HHeJ_T0023881.1 MGP_C3HHeJ_G0016686.1 mouse_genomes_project 1 193512461 194226625 + MGP_C3HHeJ_P0023881 protein_coding protein_coding MGP_C3HHeJ_T0023882.1 MGP_C3HHeJ_G0016686.1 mouse_genomes_project 1 193787733 193930400 + protein_coding retained_intron MGP_C3HHeJ_T0023883.1 MGP_C3HHeJ_G0016686.1 mouse_genomes_project 1 194215383 194226549 + MGP_C3HHeJ_P0023883 protein_coding protein_coding MGP_C3HHeJ_T0002716.1 MGP_C3HHeJ_G0002585.1 mouse_genomes_project 1 35971919 35973033 + 4930556I23Rik antisense antisense MGP_C3HHeJ_T0021245.1 MGP_C3HHeJ_G0016113.1 mouse_genomes_project 1 94896455 94952705 - MGP_C3HHeJ_P0021245 Thap4 protein_coding protein_coding MGP_C3HHeJ_T0021246.1 MGP_C3HHeJ_G0016113.1 mouse_genomes_project 1 94901668 94927670 - MGP_C3HHeJ_P0021246 Thap4 protein_coding protein_coding MGP_C3HHeJ_T0021247.1 MGP_C3HHeJ_G0016113.1 mouse_genomes_project 1 94901671 94952789 - MGP_C3HHeJ_P0021247 Thap4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021248.1 MGP_C3HHeJ_G0016113.1 mouse_genomes_project 1 94901672 94911087 - MGP_C3HHeJ_P0021248 Thap4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021249.1 MGP_C3HHeJ_G0016113.1 mouse_genomes_project 1 94910884 94947420 - MGP_C3HHeJ_P0021249 Thap4 protein_coding protein_coding MGP_C3HHeJ_T0021250.1 MGP_C3HHeJ_G0016113.1 mouse_genomes_project 1 94920370 94952575 - Thap4 protein_coding retained_intron MGP_C3HHeJ_T0012259.1 MGP_C3HHeJ_G0010363.1 mouse_genomes_project 1 192221782 192222380 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011171.1 MGP_C3HHeJ_G0009304.1 mouse_genomes_project 1 200779973 200780071 - Gm27940 misc_RNA misc_RNA MGP_C3HHeJ_T0022785.1 MGP_C3HHeJ_G0016425.1 mouse_genomes_project 1 166124934 166141359 - MGP_C3HHeJ_P0022785 Mettl13 protein_coding protein_coding MGP_C3HHeJ_T0022786.1 MGP_C3HHeJ_G0016425.1 mouse_genomes_project 1 166126486 166141330 - MGP_C3HHeJ_P0022786 Mettl13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022787.1 MGP_C3HHeJ_G0016425.1 mouse_genomes_project 1 166128649 166137170 - MGP_C3HHeJ_P0022787 Mettl13 protein_coding protein_coding MGP_C3HHeJ_T0022788.1 MGP_C3HHeJ_G0016425.1 mouse_genomes_project 1 166129950 166141064 - Mettl13 protein_coding processed_transcript MGP_C3HHeJ_T0022789.1 MGP_C3HHeJ_G0016425.1 mouse_genomes_project 1 166131727 166139335 - MGP_C3HHeJ_P0022789 Mettl13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022790.1 MGP_C3HHeJ_G0016425.1 mouse_genomes_project 1 166134256 166141346 - Mettl13 protein_coding retained_intron MGP_C3HHeJ_T0022791.1 MGP_C3HHeJ_G0016425.1 mouse_genomes_project 1 166136443 166141336 - Mettl13 protein_coding retained_intron MGP_C3HHeJ_T0022792.1 MGP_C3HHeJ_G0016425.1 mouse_genomes_project 1 166139635 166141337 - Mettl13 protein_coding retained_intron MGP_C3HHeJ_T0022851.1 MGP_C3HHeJ_G0016439.1 mouse_genomes_project 1 167392765 167533618 + MGP_C3HHeJ_P0022851 Kifap3 protein_coding protein_coding MGP_C3HHeJ_T0022852.1 MGP_C3HHeJ_G0016439.1 mouse_genomes_project 1 167392765 167533618 + MGP_C3HHeJ_P0022852 Kifap3 protein_coding protein_coding MGP_C3HHeJ_T0000628.1 MGP_C3HHeJ_G0000573.1 mouse_genomes_project 1 141294297 141297957 - TEC TEC MGP_C3HHeJ_T0000359.1 MGP_C3HHeJ_G0000309.1 mouse_genomes_project 1 12691856 12693389 + TEC TEC MGP_C3HHeJ_T0011819.1 MGP_C3HHeJ_G0009923.1 mouse_genomes_project 1 16816955 16819199 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101569.1 MGP_C3HHeJ_G0039535.1 mouse_genomes_project 1 93747589 93747701 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0021723.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133684719 133925256 - MGP_C3HHeJ_P0021723 Srgap2 protein_coding protein_coding MGP_C3HHeJ_T0021724.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133688826 133699922 - MGP_C3HHeJ_P0021724 Srgap2 protein_coding protein_coding MGP_C3HHeJ_T0021725.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133694456 133729804 - Srgap2 protein_coding processed_transcript MGP_C3HHeJ_T0021726.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133694686 133925256 - MGP_C3HHeJ_P0021726 Srgap2 protein_coding protein_coding MGP_C3HHeJ_T0021727.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133694687 133703781 - Srgap2 protein_coding processed_transcript MGP_C3HHeJ_T0021728.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133694689 133741210 - MGP_C3HHeJ_P0021728 Srgap2 protein_coding protein_coding MGP_C3HHeJ_T0021729.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133695224 133695849 - Srgap2 protein_coding processed_transcript MGP_C3HHeJ_T0021730.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133696109 133763705 - MGP_C3HHeJ_P0021730 Srgap2 protein_coding protein_coding MGP_C3HHeJ_T0021731.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133712854 133728997 - Srgap2 protein_coding retained_intron MGP_C3HHeJ_T0021732.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133761666 133925261 - Srgap2 protein_coding retained_intron MGP_C3HHeJ_T0021733.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133805766 133912149 - MGP_C3HHeJ_P0021733 Srgap2 protein_coding protein_coding MGP_C3HHeJ_T0021734.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133831602 133902419 - MGP_C3HHeJ_P0021734 Srgap2 protein_coding protein_coding MGP_C3HHeJ_T0005674.1 MGP_C3HHeJ_G0004756.1 mouse_genomes_project 1 61140010 61145852 + Gm11587 lincRNA lincRNA MGP_C3HHeJ_T0101564.1 MGP_C3HHeJ_G0039530.1 mouse_genomes_project 1 89048164 89048948 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098665.1 MGP_C3HHeJ_G0036859.1 mouse_genomes_project 1 171104847 171104954 + Gm24182 snRNA snRNA MGP_C3HHeJ_T0009420.1 MGP_C3HHeJ_G0007553.1 mouse_genomes_project 1 82651710 82651814 + Mir6344 miRNA miRNA MGP_C3HHeJ_T0022461.1 MGP_C3HHeJ_G0016370.1 mouse_genomes_project 1 157125292 157190428 - MGP_C3HHeJ_P0022461 Teddm2 protein_coding protein_coding MGP_C3HHeJ_T0022462.1 MGP_C3HHeJ_G0016370.1 mouse_genomes_project 1 157125292 157126946 - MGP_C3HHeJ_P0022462 Teddm2 protein_coding protein_coding MGP_C3HHeJ_T0022464.1 MGP_C3HHeJ_G0016370.1 mouse_genomes_project 1 157187289 157190448 - Teddm2 protein_coding retained_intron MGP_C3HHeJ_T0023263.1 MGP_C3HHeJ_G0016534.1 mouse_genomes_project 1 176050695 176098292 + MGP_C3HHeJ_P0023263 Slamf1 protein_coding protein_coding MGP_C3HHeJ_T0023264.1 MGP_C3HHeJ_G0016534.1 mouse_genomes_project 1 176050723 176092946 + Slamf1 protein_coding retained_intron MGP_C3HHeJ_T0023748.1 MGP_C3HHeJ_G0016657.1 mouse_genomes_project 1 187688052 187733660 + Capn8 protein_coding processed_transcript MGP_C3HHeJ_T0023749.1 MGP_C3HHeJ_G0016657.1 mouse_genomes_project 1 187688057 187759410 + MGP_C3HHeJ_P0023749 Capn8 protein_coding protein_coding MGP_C3HHeJ_T0023750.1 MGP_C3HHeJ_G0016657.1 mouse_genomes_project 1 187688083 187759298 + MGP_C3HHeJ_P0023750 Capn8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0009468.1 MGP_C3HHeJ_G0007601.1 mouse_genomes_project 1 181404541 181404640 - Mir350 miRNA miRNA MGP_C3HHeJ_T0005851.1 MGP_C3HHeJ_G0004897.1 mouse_genomes_project 1 140676543 140679947 + A430106G13Rik lincRNA lincRNA MGP_C3HHeJ_T0011833.1 MGP_C3HHeJ_G0009937.1 mouse_genomes_project 1 21750914 21751781 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097953.1 MGP_C3HHeJ_G0036165.1 mouse_genomes_project 1 29147584 29147722 - Gm27362 rRNA rRNA MGP_C3HHeJ_T0009478.1 MGP_C3HHeJ_G0007611.1 mouse_genomes_project 1 198940988 198941056 - Mir205 miRNA miRNA MGP_C3HHeJ_T0012262.1 MGP_C3HHeJ_G0010366.1 mouse_genomes_project 1 194557421 194557802 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000383.1 MGP_C3HHeJ_G0000331.1 mouse_genomes_project 1 23350963 23354958 - TEC TEC MGP_C3HHeJ_T0000410.1 MGP_C3HHeJ_G0000357.1 mouse_genomes_project 1 32415540 32417765 + TEC TEC MGP_C3HHeJ_T0000754.1 MGP_C3HHeJ_G0000697.1 mouse_genomes_project 1 191926259 191928138 - TEC TEC MGP_C3HHeJ_T0099876.1 MGP_C3HHeJ_G0038070.1 mouse_genomes_project 1 111453294 111453424 - Gm22159 snoRNA snoRNA MGP_C3HHeJ_T0021114.1 MGP_C3HHeJ_G0016083.1 mouse_genomes_project 1 93581682 93619220 - MGP_C3HHeJ_P0021114 protein_coding protein_coding MGP_C3HHeJ_T0021115.1 MGP_C3HHeJ_G0016083.1 mouse_genomes_project 1 93613741 93653213 - MGP_C3HHeJ_P0021115 protein_coding protein_coding MGP_C3HHeJ_T0009402.1 MGP_C3HHeJ_G0007535.1 mouse_genomes_project 1 53283225 53283297 + Mir7681 miRNA miRNA MGP_C3HHeJ_T0012198.1 MGP_C3HHeJ_G0010302.1 mouse_genomes_project 1 160767821 160768223 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023836.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190539232 190588101 + Eprs protein_coding retained_intron MGP_C3HHeJ_T0023837.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190539232 190606541 + MGP_C3HHeJ_P0023837 Eprs protein_coding protein_coding MGP_C3HHeJ_T0023838.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190539246 190543123 + Eprs protein_coding retained_intron MGP_C3HHeJ_T0023839.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190539267 190606540 + MGP_C3HHeJ_P0023839 Eprs protein_coding unknown_likely_coding MGP_C3HHeJ_T0023840.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190539320 190553069 + Eprs protein_coding retained_intron MGP_C3HHeJ_T0023841.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190539372 190557935 + MGP_C3HHeJ_P0023841 Eprs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023842.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190541626 190549420 + Eprs protein_coding retained_intron MGP_C3HHeJ_T0023843.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190543739 190554981 + MGP_C3HHeJ_P0023843 Eprs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023844.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190543746 190550440 + Eprs protein_coding retained_intron MGP_C3HHeJ_T0023845.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190577791 190581447 + Eprs protein_coding retained_intron MGP_C3HHeJ_T0000686.1 MGP_C3HHeJ_G0000631.1 mouse_genomes_project 1 164303541 164307569 + TEC TEC MGP_C3HHeJ_T0005739.1 MGP_C3HHeJ_G0004804.1 mouse_genomes_project 1 84246782 84510692 - 4933436I20Rik lincRNA lincRNA MGP_C3HHeJ_T0005740.1 MGP_C3HHeJ_G0004804.1 mouse_genomes_project 1 84443094 84510718 - 4933436I20Rik lincRNA lincRNA MGP_C3HHeJ_T0005948.1 MGP_C3HHeJ_G0004974.1 mouse_genomes_project 1 188823900 188886332 + Gm34068 lincRNA lincRNA MGP_C3HHeJ_T0019016.1 MGP_C3HHeJ_G0015683.1 mouse_genomes_project 1 32738909 32753372 + MGP_C3HHeJ_P0019016 Cfc1 protein_coding protein_coding MGP_C3HHeJ_T0021746.1 MGP_C3HHeJ_G0016227.1 mouse_genomes_project 1 134149421 134176883 + MGP_C3HHeJ_P0021746 Slc26a9 protein_coding protein_coding MGP_C3HHeJ_T0021747.1 MGP_C3HHeJ_G0016227.1 mouse_genomes_project 1 134149437 134169386 + MGP_C3HHeJ_P0021747 Slc26a9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021748.1 MGP_C3HHeJ_G0016227.1 mouse_genomes_project 1 134155782 134156487 + Slc26a9 protein_coding retained_intron MGP_C3HHeJ_T0021749.1 MGP_C3HHeJ_G0016227.1 mouse_genomes_project 1 134155890 134159387 + MGP_C3HHeJ_P0021749 Slc26a9 protein_coding protein_coding MGP_C3HHeJ_T0000746.1 MGP_C3HHeJ_G0000689.1 mouse_genomes_project 1 187609942 187614084 + TEC TEC MGP_C3HHeJ_T0009428.1 MGP_C3HHeJ_G0007561.1 mouse_genomes_project 1 88874344 88874454 + Gm25198 miRNA miRNA MGP_C3HHeJ_T0000637.1 MGP_C3HHeJ_G0000582.1 mouse_genomes_project 1 144436994 144438266 + TEC TEC MGP_C3HHeJ_T0002893.1 MGP_C3HHeJ_G0002720.1 mouse_genomes_project 1 181386738 181391097 + Gm36992 antisense antisense MGP_C3HHeJ_T0002725.1 MGP_C3HHeJ_G0002592.1 mouse_genomes_project 1 38092973 38100179 + D930019O06Rik antisense antisense MGP_C3HHeJ_T0022278.1 MGP_C3HHeJ_G0016336.1 mouse_genomes_project 1 147447486 147499341 - Rgs21 protein_coding processed_transcript MGP_C3HHeJ_T0022279.1 MGP_C3HHeJ_G0016336.1 mouse_genomes_project 1 147449437 147483194 - MGP_C3HHeJ_P0022279 Rgs21 protein_coding protein_coding MGP_C3HHeJ_T0018838.1 MGP_C3HHeJ_G0015646.1 mouse_genomes_project 1 18472883 18555526 - MGP_C3HHeJ_P0018838 Tram2 protein_coding protein_coding MGP_C3HHeJ_T0018839.1 MGP_C3HHeJ_G0015646.1 mouse_genomes_project 1 18480898 18517724 - Tram2 protein_coding processed_transcript MGP_C3HHeJ_T0005955.1 MGP_C3HHeJ_G0004977.1 mouse_genomes_project 1 189488184 189494130 - Gm37712 lincRNA lincRNA MGP_C3HHeJ_T0098660.1 MGP_C3HHeJ_G0036854.1 mouse_genomes_project 1 152805739 152805845 - Gm23535 snRNA snRNA MGP_C3HHeJ_T0002843.1 MGP_C3HHeJ_G0002681.1 mouse_genomes_project 1 153755960 153803148 + antisense antisense MGP_C3HHeJ_T0002844.1 MGP_C3HHeJ_G0002681.1 mouse_genomes_project 1 153755993 153923085 + antisense antisense MGP_C3HHeJ_T0097956.1 MGP_C3HHeJ_G0036168.1 mouse_genomes_project 1 74045836 74045962 + Gm25329 rRNA rRNA MGP_C3HHeJ_T0016792.1 MGP_C3HHeJ_G0014868.1 mouse_genomes_project 1 99381561 99386164 - B230216N24Rik processed_transcript retained_intron MGP_C3HHeJ_T0016793.1 MGP_C3HHeJ_G0014868.1 mouse_genomes_project 1 99381572 99400690 - B230216N24Rik processed_transcript sense_intronic MGP_C3HHeJ_T0016794.1 MGP_C3HHeJ_G0014868.1 mouse_genomes_project 1 99382162 99400724 - B230216N24Rik processed_transcript sense_intronic MGP_C3HHeJ_T0016795.1 MGP_C3HHeJ_G0014868.1 mouse_genomes_project 1 99382313 99410522 - B230216N24Rik processed_transcript sense_intronic MGP_C3HHeJ_T0016796.1 MGP_C3HHeJ_G0014868.1 mouse_genomes_project 1 99398747 99400685 - B230216N24Rik processed_transcript retained_intron MGP_C3HHeJ_T0000639.1 MGP_C3HHeJ_G0000584.1 mouse_genomes_project 1 148275609 148278863 - TEC TEC MGP_C3HHeJ_T0000591.1 MGP_C3HHeJ_G0000538.1 mouse_genomes_project 1 132156915 132159142 + TEC TEC MGP_C3HHeJ_T0022471.1 MGP_C3HHeJ_G0016374.1 mouse_genomes_project 1 157706357 158050618 - MGP_C3HHeJ_P0022471 Cacna1e protein_coding protein_coding MGP_C3HHeJ_T0022472.1 MGP_C3HHeJ_G0016374.1 mouse_genomes_project 1 157708145 158050182 - MGP_C3HHeJ_P0022472 Cacna1e protein_coding protein_coding MGP_C3HHeJ_T0022473.1 MGP_C3HHeJ_G0016374.1 mouse_genomes_project 1 157710325 158050181 - MGP_C3HHeJ_P0022473 Cacna1e protein_coding unknown_likely_coding MGP_C3HHeJ_T0022474.1 MGP_C3HHeJ_G0016374.1 mouse_genomes_project 1 157788189 157795802 - Cacna1e protein_coding retained_intron MGP_C3HHeJ_T0022475.1 MGP_C3HHeJ_G0016374.1 mouse_genomes_project 1 157800180 158144014 - Cacna1e protein_coding retained_intron MGP_C3HHeJ_T0022476.1 MGP_C3HHeJ_G0016374.1 mouse_genomes_project 1 158023389 158212725 - Cacna1e protein_coding retained_intron MGP_C3HHeJ_T0022477.1 MGP_C3HHeJ_G0016374.1 mouse_genomes_project 1 158210389 158212248 - Cacna1e protein_coding retained_intron MGP_C3HHeJ_T0002781.1 MGP_C3HHeJ_G0002633.1 mouse_genomes_project 1 87010218 87011083 - Gm28626 antisense antisense MGP_C3HHeJ_T0099861.1 MGP_C3HHeJ_G0038055.1 mouse_genomes_project 1 84526155 84526279 + Gm24555 snoRNA snoRNA MGP_C3HHeJ_T0022219.1 MGP_C3HHeJ_G0016325.1 mouse_genomes_project 1 142939741 143050500 - MGP_C3HHeJ_P0022219 protein_coding unknown_likely_coding MGP_C3HHeJ_T0022222.1 MGP_C3HHeJ_G0016325.1 mouse_genomes_project 1 142939746 143050689 - MGP_C3HHeJ_P0022222 protein_coding protein_coding MGP_C3HHeJ_T0022223.1 MGP_C3HHeJ_G0016325.1 mouse_genomes_project 1 142939749 143050598 - MGP_C3HHeJ_P0022223 protein_coding protein_coding MGP_C3HHeJ_T0022224.1 MGP_C3HHeJ_G0016325.1 mouse_genomes_project 1 142939750 143050689 - MGP_C3HHeJ_P0022224 protein_coding protein_coding MGP_C3HHeJ_T0022225.1 MGP_C3HHeJ_G0016325.1 mouse_genomes_project 1 142939753 143005702 - MGP_C3HHeJ_P0022225 protein_coding protein_coding MGP_C3HHeJ_T0022227.1 MGP_C3HHeJ_G0016325.1 mouse_genomes_project 1 142939770 143050600 - MGP_C3HHeJ_P0022227 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022228.1 MGP_C3HHeJ_G0016325.1 mouse_genomes_project 1 143050411 143051042 - protein_coding retained_intron MGP_C3HHeJ_T0099872.1 MGP_C3HHeJ_G0038066.1 mouse_genomes_project 1 104515600 104515734 - Gm22034 snoRNA snoRNA MGP_C3HHeJ_T0000462.1 MGP_C3HHeJ_G0000409.1 mouse_genomes_project 1 61503942 61512445 + TEC TEC MGP_C3HHeJ_T0002727.1 MGP_C3HHeJ_G0002594.1 mouse_genomes_project 1 39038020 39047765 - Gm35801 antisense antisense MGP_C3HHeJ_T0002728.1 MGP_C3HHeJ_G0002594.1 mouse_genomes_project 1 39038040 39047751 - Gm35801 antisense antisense MGP_C3HHeJ_T0011169.1 MGP_C3HHeJ_G0009302.1 mouse_genomes_project 1 198412684 198412973 - Gm23583 misc_RNA misc_RNA MGP_C3HHeJ_T0098631.1 MGP_C3HHeJ_G0036825.1 mouse_genomes_project 1 78267164 78267328 - Gm26263 snRNA snRNA MGP_C3HHeJ_T0011844.1 MGP_C3HHeJ_G0009948.1 mouse_genomes_project 1 26430542 26430785 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002898.1 MGP_C3HHeJ_G0002724.1 mouse_genomes_project 1 183195676 183198740 - antisense antisense MGP_C3HHeJ_T0011784.1 MGP_C3HHeJ_G0009888.1 mouse_genomes_project 1 6514184 6516098 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005770.1 MGP_C3HHeJ_G0004833.1 mouse_genomes_project 1 94291702 94292886 - Gm28086 lincRNA lincRNA MGP_C3HHeJ_T0000580.1 MGP_C3HHeJ_G0000527.1 mouse_genomes_project 1 129498088 129502849 + TEC TEC MGP_C3HHeJ_T0022799.1 MGP_C3HHeJ_G0016428.1 mouse_genomes_project 1 166244795 166254379 - 7420461P10Rik protein_coding processed_transcript MGP_C3HHeJ_T0022800.1 MGP_C3HHeJ_G0016428.1 mouse_genomes_project 1 166244795 166255644 - MGP_C3HHeJ_P0022800 7420461P10Rik protein_coding protein_coding MGP_C3HHeJ_T0022801.1 MGP_C3HHeJ_G0016428.1 mouse_genomes_project 1 166244805 166255757 - MGP_C3HHeJ_P0022801 7420461P10Rik protein_coding protein_coding MGP_C3HHeJ_T0099854.1 MGP_C3HHeJ_G0038048.1 mouse_genomes_project 1 63038050 63038128 + Gm26457 snoRNA snoRNA MGP_C3HHeJ_T0022235.1 MGP_C3HHeJ_G0016328.1 mouse_genomes_project 1 146516242 146624284 - MGP_C3HHeJ_P0022235 Cdc73 protein_coding protein_coding MGP_C3HHeJ_T0022236.1 MGP_C3HHeJ_G0016328.1 mouse_genomes_project 1 146523597 146559081 - Cdc73 protein_coding processed_transcript MGP_C3HHeJ_T0022237.1 MGP_C3HHeJ_G0016328.1 mouse_genomes_project 1 146552360 146555087 - Cdc73 protein_coding retained_intron MGP_C3HHeJ_T0022238.1 MGP_C3HHeJ_G0016328.1 mouse_genomes_project 1 146557967 146561029 - Cdc73 protein_coding retained_intron MGP_C3HHeJ_T0022240.1 MGP_C3HHeJ_G0016328.1 mouse_genomes_project 1 146613132 146623592 - MGP_C3HHeJ_P0022240 Cdc73 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021290.1 MGP_C3HHeJ_G0016126.1 mouse_genomes_project 1 99069851 99078973 - Ppip5k2 protein_coding retained_intron MGP_C3HHeJ_T0021291.1 MGP_C3HHeJ_G0016126.1 mouse_genomes_project 1 99069851 99134131 - MGP_C3HHeJ_P0021291 Ppip5k2 protein_coding protein_coding MGP_C3HHeJ_T0021292.1 MGP_C3HHeJ_G0016126.1 mouse_genomes_project 1 99069851 99134131 - MGP_C3HHeJ_P0021292 Ppip5k2 protein_coding protein_coding MGP_C3HHeJ_T0021293.1 MGP_C3HHeJ_G0016126.1 mouse_genomes_project 1 99071468 99125263 - MGP_C3HHeJ_P0021293 Ppip5k2 protein_coding protein_coding MGP_C3HHeJ_T0021294.1 MGP_C3HHeJ_G0016126.1 mouse_genomes_project 1 99075257 99080370 - MGP_C3HHeJ_P0021294 Ppip5k2 protein_coding protein_coding MGP_C3HHeJ_T0021295.1 MGP_C3HHeJ_G0016126.1 mouse_genomes_project 1 99082608 99085172 - Ppip5k2 protein_coding retained_intron MGP_C3HHeJ_T0021296.1 MGP_C3HHeJ_G0016126.1 mouse_genomes_project 1 99105939 99109898 - Ppip5k2 protein_coding retained_intron MGP_C3HHeJ_T0019720.1 MGP_C3HHeJ_G0015819.1 mouse_genomes_project 1 58001733 58019339 + MGP_C3HHeJ_P0019720 Bzw1 protein_coding protein_coding MGP_C3HHeJ_T0019721.1 MGP_C3HHeJ_G0015819.1 mouse_genomes_project 1 58001893 58011774 + MGP_C3HHeJ_P0019721 Bzw1 protein_coding protein_coding MGP_C3HHeJ_T0019722.1 MGP_C3HHeJ_G0015819.1 mouse_genomes_project 1 58001901 58017468 + MGP_C3HHeJ_P0019722 Bzw1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019723.1 MGP_C3HHeJ_G0015819.1 mouse_genomes_project 1 58002239 58017007 + MGP_C3HHeJ_P0019723 Bzw1 protein_coding protein_coding MGP_C3HHeJ_T0012231.1 MGP_C3HHeJ_G0010335.1 mouse_genomes_project 1 175557141 175557311 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000700.1 MGP_C3HHeJ_G0000645.1 mouse_genomes_project 1 169084415 169085750 + TEC TEC MGP_C3HHeJ_T0009410.1 MGP_C3HHeJ_G0007543.1 mouse_genomes_project 1 64307133 64307202 + Gm25748 miRNA miRNA MGP_C3HHeJ_T0021266.1 MGP_C3HHeJ_G0016116.1 mouse_genomes_project 1 95004960 95023176 + MGP_C3HHeJ_P0021266 Ing5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021267.1 MGP_C3HHeJ_G0016116.1 mouse_genomes_project 1 95004980 95023181 + MGP_C3HHeJ_P0021267 Ing5 protein_coding protein_coding MGP_C3HHeJ_T0023732.1 MGP_C3HHeJ_G0016653.1 mouse_genomes_project 1 187382815 187389848 - MGP_C3HHeJ_P0023732 Degs1 protein_coding protein_coding MGP_C3HHeJ_T0023733.1 MGP_C3HHeJ_G0016653.1 mouse_genomes_project 1 187385540 187389848 - Degs1 protein_coding retained_intron MGP_C3HHeJ_T0023734.1 MGP_C3HHeJ_G0016653.1 mouse_genomes_project 1 187386047 187389268 - MGP_C3HHeJ_P0023734 Degs1 protein_coding protein_coding MGP_C3HHeJ_T0021322.1 MGP_C3HHeJ_G0016130.1 mouse_genomes_project 1 101208511 101947367 + MGP_C3HHeJ_P0021322 Cntnap5b protein_coding protein_coding MGP_C3HHeJ_T0021323.1 MGP_C3HHeJ_G0016130.1 mouse_genomes_project 1 101563902 101948460 + MGP_C3HHeJ_P0021323 Cntnap5b protein_coding protein_coding MGP_C3HHeJ_T0021324.1 MGP_C3HHeJ_G0016130.1 mouse_genomes_project 1 101711799 101832845 + Cntnap5b protein_coding processed_transcript MGP_C3HHeJ_T0012041.1 MGP_C3HHeJ_G0010145.1 mouse_genomes_project 1 90040547 90040790 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018809.1 MGP_C3HHeJ_G0015637.1 mouse_genomes_project 1 15694287 15706845 - MGP_C3HHeJ_P0018809 Defb41 protein_coding protein_coding MGP_C3HHeJ_T0018810.1 MGP_C3HHeJ_G0015637.1 mouse_genomes_project 1 15702230 15706787 - MGP_C3HHeJ_P0018810 Defb41 protein_coding protein_coding MGP_C3HHeJ_T0022982.1 MGP_C3HHeJ_G0016466.1 mouse_genomes_project 1 169816740 169849901 - MGP_C3HHeJ_P0022982 Dusp27 protein_coding protein_coding MGP_C3HHeJ_T0022983.1 MGP_C3HHeJ_G0016466.1 mouse_genomes_project 1 169816745 169849875 - MGP_C3HHeJ_P0022983 Dusp27 protein_coding protein_coding MGP_C3HHeJ_T0002719.1 MGP_C3HHeJ_G0002588.1 mouse_genomes_project 1 36609271 36619444 + Gm16150 antisense antisense MGP_C3HHeJ_T0002720.1 MGP_C3HHeJ_G0002588.1 mouse_genomes_project 1 36613540 36620507 + Gm16150 antisense antisense MGP_C3HHeJ_T0018945.1 MGP_C3HHeJ_G0015673.1 mouse_genomes_project 1 31596498 31825160 - MGP_C3HHeJ_P0018945 Prim2 protein_coding protein_coding MGP_C3HHeJ_T0018946.1 MGP_C3HHeJ_G0015673.1 mouse_genomes_project 1 31623080 31776499 - Prim2 protein_coding retained_intron MGP_C3HHeJ_T0018947.1 MGP_C3HHeJ_G0015673.1 mouse_genomes_project 1 31775241 31777681 - Prim2 protein_coding retained_intron MGP_C3HHeJ_T0009474.1 MGP_C3HHeJ_G0007607.1 mouse_genomes_project 1 190480187 190480254 + Mir194-1 miRNA miRNA MGP_C3HHeJ_T0020999.1 MGP_C3HHeJ_G0016062.1 mouse_genomes_project 1 91813833 91894111 - MGP_C3HHeJ_P0020999 Col6a3 protein_coding protein_coding MGP_C3HHeJ_T0021000.1 MGP_C3HHeJ_G0016062.1 mouse_genomes_project 1 91813833 91894111 - MGP_C3HHeJ_P0021000 Col6a3 protein_coding protein_coding MGP_C3HHeJ_T0021001.1 MGP_C3HHeJ_G0016062.1 mouse_genomes_project 1 91814760 91894092 - MGP_C3HHeJ_P0021001 Col6a3 protein_coding protein_coding MGP_C3HHeJ_T0021002.1 MGP_C3HHeJ_G0016062.1 mouse_genomes_project 1 91815289 91821235 - Col6a3 protein_coding retained_intron MGP_C3HHeJ_T0021003.1 MGP_C3HHeJ_G0016062.1 mouse_genomes_project 1 91839422 91858286 - Col6a3 protein_coding retained_intron MGP_C3HHeJ_T0021004.1 MGP_C3HHeJ_G0016062.1 mouse_genomes_project 1 91843061 91843891 - Col6a3 protein_coding retained_intron MGP_C3HHeJ_T0021005.1 MGP_C3HHeJ_G0016062.1 mouse_genomes_project 1 91852782 91894068 - MGP_C3HHeJ_P0021005 Col6a3 protein_coding protein_coding MGP_C3HHeJ_T0021006.1 MGP_C3HHeJ_G0016062.1 mouse_genomes_project 1 91872445 91894111 - MGP_C3HHeJ_P0021006 Col6a3 protein_coding protein_coding MGP_C3HHeJ_T0011825.1 MGP_C3HHeJ_G0009929.1 mouse_genomes_project 1 19059231 19060355 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023689.1 MGP_C3HHeJ_G0016646.1 mouse_genomes_project 1 186206835 186254930 - MGP_C3HHeJ_P0023689 Wdr26 protein_coding protein_coding MGP_C3HHeJ_T0023690.1 MGP_C3HHeJ_G0016646.1 mouse_genomes_project 1 186206839 186254844 - MGP_C3HHeJ_P0023690 Wdr26 protein_coding protein_coding MGP_C3HHeJ_T0023691.1 MGP_C3HHeJ_G0016646.1 mouse_genomes_project 1 186210680 186254804 - MGP_C3HHeJ_P0023691 Wdr26 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023692.1 MGP_C3HHeJ_G0016646.1 mouse_genomes_project 1 186211258 186217850 - MGP_C3HHeJ_P0023692 Wdr26 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023693.1 MGP_C3HHeJ_G0016646.1 mouse_genomes_project 1 186213990 186217323 - MGP_C3HHeJ_P0023693 Wdr26 protein_coding protein_coding MGP_C3HHeJ_T0023694.1 MGP_C3HHeJ_G0016646.1 mouse_genomes_project 1 186215890 186217980 - Wdr26 protein_coding processed_transcript MGP_C3HHeJ_T0023695.1 MGP_C3HHeJ_G0016646.1 mouse_genomes_project 1 186220985 186230036 - Wdr26 protein_coding retained_intron MGP_C3HHeJ_T0023696.1 MGP_C3HHeJ_G0016646.1 mouse_genomes_project 1 186236499 186241296 - Wdr26 protein_coding retained_intron MGP_C3HHeJ_T0023134.1 MGP_C3HHeJ_G0016509.1 mouse_genomes_project 1 175126019 175130898 + MGP_C3HHeJ_P0023134 Nr1i3 protein_coding protein_coding MGP_C3HHeJ_T0023135.1 MGP_C3HHeJ_G0016509.1 mouse_genomes_project 1 175126020 175130896 + MGP_C3HHeJ_P0023135 Nr1i3 protein_coding protein_coding MGP_C3HHeJ_T0023136.1 MGP_C3HHeJ_G0016509.1 mouse_genomes_project 1 175126035 175132755 + MGP_C3HHeJ_P0023136 Nr1i3 protein_coding protein_coding MGP_C3HHeJ_T0023137.1 MGP_C3HHeJ_G0016509.1 mouse_genomes_project 1 175126043 175131054 + Nr1i3 protein_coding retained_intron MGP_C3HHeJ_T0023138.1 MGP_C3HHeJ_G0016509.1 mouse_genomes_project 1 175126051 175130898 + MGP_C3HHeJ_P0023138 Nr1i3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023139.1 MGP_C3HHeJ_G0016509.1 mouse_genomes_project 1 175126070 175131246 + Nr1i3 protein_coding retained_intron MGP_C3HHeJ_T0023140.1 MGP_C3HHeJ_G0016509.1 mouse_genomes_project 1 175126070 175130897 + MGP_C3HHeJ_P0023140 Nr1i3 protein_coding protein_coding MGP_C3HHeJ_T0023141.1 MGP_C3HHeJ_G0016509.1 mouse_genomes_project 1 175126401 175130771 + Nr1i3 protein_coding retained_intron MGP_C3HHeJ_T0000534.1 MGP_C3HHeJ_G0000481.1 mouse_genomes_project 1 91887419 91889276 - TEC TEC MGP_C3HHeJ_T0012116.1 MGP_C3HHeJ_G0010220.1 mouse_genomes_project 1 121920496 121921160 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002940.1 MGP_C3HHeJ_G0002756.1 mouse_genomes_project 1 198716636 198717760 - Gm37650 antisense antisense MGP_C3HHeJ_T0020445.1 MGP_C3HHeJ_G0015949.1 mouse_genomes_project 1 75505197 75508771 - MGP_C3HHeJ_P0020445 A630095N17Rik protein_coding protein_coding MGP_C3HHeJ_T0020446.1 MGP_C3HHeJ_G0015949.1 mouse_genomes_project 1 75505358 75517159 - MGP_C3HHeJ_P0020446 A630095N17Rik protein_coding protein_coding MGP_C3HHeJ_T0020447.1 MGP_C3HHeJ_G0015949.1 mouse_genomes_project 1 75515931 75517171 - MGP_C3HHeJ_P0020447 A630095N17Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011867.1 MGP_C3HHeJ_G0009971.1 mouse_genomes_project 1 31811998 31812326 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098657.1 MGP_C3HHeJ_G0036851.1 mouse_genomes_project 1 144180615 144180722 + Gm25457 snRNA snRNA MGP_C3HHeJ_T0019973.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63349401 63484601 + MGP_C3HHeJ_P0019973 Adam23 protein_coding protein_coding MGP_C3HHeJ_T0019974.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63349405 63507808 + MGP_C3HHeJ_P0019974 Adam23 protein_coding protein_coding MGP_C3HHeJ_T0019975.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63349420 63479677 + Adam23 protein_coding retained_intron MGP_C3HHeJ_T0019976.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63349445 63441567 + Adam23 protein_coding retained_intron MGP_C3HHeJ_T0019977.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63349722 63504448 + MGP_C3HHeJ_P0019977 Adam23 protein_coding protein_coding MGP_C3HHeJ_T0019978.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63349722 63507808 + MGP_C3HHeJ_P0019978 Adam23 protein_coding protein_coding MGP_C3HHeJ_T0019979.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63374672 63455051 + Adam23 protein_coding processed_transcript MGP_C3HHeJ_T0019980.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63398231 63507808 + Adam23 protein_coding processed_transcript MGP_C3HHeJ_T0019981.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63445694 63449218 + Adam23 protein_coding retained_intron MGP_C3HHeJ_T0019982.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63465242 63477493 + Adam23 protein_coding retained_intron MGP_C3HHeJ_T0019983.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63490322 63493710 + Adam23 protein_coding retained_intron MGP_C3HHeJ_T0019984.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63496549 63504342 + Adam23 protein_coding retained_intron MGP_C3HHeJ_T0012147.1 MGP_C3HHeJ_G0010251.1 mouse_genomes_project 1 139446930 139447269 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005977.1 MGP_C3HHeJ_G0004995.1 mouse_genomes_project 1 195959926 195970149 + Gm30932 lincRNA lincRNA MGP_C3HHeJ_T0020323.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 74987426 75029239 + MGP_C3HHeJ_P0020323 Ttll4 protein_coding protein_coding MGP_C3HHeJ_T0020324.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 74987431 75010855 + MGP_C3HHeJ_P0020324 Ttll4 protein_coding protein_coding MGP_C3HHeJ_T0020325.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 74987498 74998923 + Ttll4 protein_coding retained_intron MGP_C3HHeJ_T0020326.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 74987498 75007529 + MGP_C3HHeJ_P0020326 Ttll4 protein_coding protein_coding MGP_C3HHeJ_T0020327.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 75004635 75023477 + MGP_C3HHeJ_P0020327 Ttll4 protein_coding protein_coding MGP_C3HHeJ_T0020328.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 75010823 75014126 + Ttll4 protein_coding processed_transcript MGP_C3HHeJ_T0020329.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 75011453 75014148 + Ttll4 protein_coding processed_transcript MGP_C3HHeJ_T0020330.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 75014920 75016176 + Ttll4 protein_coding retained_intron MGP_C3HHeJ_T0020331.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 75015570 75027332 + Ttll4 protein_coding processed_transcript MGP_C3HHeJ_T0020332.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 75020712 75025378 + Ttll4 protein_coding retained_intron MGP_C3HHeJ_T0020333.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 75021233 75023341 + Ttll4 protein_coding processed_transcript MGP_C3HHeJ_T0018599.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6912413 7020939 + MGP_C3HHeJ_P0018599 Sgk3 protein_coding protein_coding MGP_C3HHeJ_T0018600.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6912449 7020941 + MGP_C3HHeJ_P0018600 Sgk3 protein_coding protein_coding MGP_C3HHeJ_T0018601.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6912449 7020866 + MGP_C3HHeJ_P0018601 Sgk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018602.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6912464 6947767 + Sgk3 protein_coding retained_intron MGP_C3HHeJ_T0018603.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6912491 7019714 + MGP_C3HHeJ_P0018603 Sgk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018604.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6912514 7020104 + MGP_C3HHeJ_P0018604 Sgk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018605.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6965574 7020939 + MGP_C3HHeJ_P0018605 Sgk3 protein_coding protein_coding MGP_C3HHeJ_T0018606.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6965623 6985456 + Sgk3 protein_coding processed_transcript MGP_C3HHeJ_T0018607.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6965623 6992373 + Sgk3 protein_coding retained_intron MGP_C3HHeJ_T0018608.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6965699 7019949 + MGP_C3HHeJ_P0018608 Sgk3 protein_coding protein_coding MGP_C3HHeJ_T0018609.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 7003510 7009288 + Sgk3 protein_coding retained_intron MGP_C3HHeJ_T0018610.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 7015534 7019283 + Sgk3 protein_coding retained_intron MGP_C3HHeJ_T0000525.1 MGP_C3HHeJ_G0000472.1 mouse_genomes_project 1 87782297 87782945 + TEC TEC MGP_C3HHeJ_T0022019.1 MGP_C3HHeJ_G0016285.1 mouse_genomes_project 1 137696508 137709477 + MGP_C3HHeJ_P0022019 Ptpn7 protein_coding protein_coding MGP_C3HHeJ_T0022020.1 MGP_C3HHeJ_G0016285.1 mouse_genomes_project 1 137696533 137712024 + MGP_C3HHeJ_P0022020 Ptpn7 protein_coding protein_coding MGP_C3HHeJ_T0022021.1 MGP_C3HHeJ_G0016285.1 mouse_genomes_project 1 137697116 137703750 + Ptpn7 protein_coding retained_intron MGP_C3HHeJ_T0022022.1 MGP_C3HHeJ_G0016285.1 mouse_genomes_project 1 137697117 137711666 + MGP_C3HHeJ_P0022022 Ptpn7 protein_coding protein_coding MGP_C3HHeJ_T0016766.1 MGP_C3HHeJ_G0014857.1 mouse_genomes_project 1 51316710 51396711 + Gm28177 processed_transcript processed_transcript MGP_C3HHeJ_T0011969.1 MGP_C3HHeJ_G0010073.1 mouse_genomes_project 1 60768028 60768264 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020024.1 MGP_C3HHeJ_G0015870.1 mouse_genomes_project 1 64942591 64962607 - MGP_C3HHeJ_P0020024 Akr1cl protein_coding protein_coding MGP_C3HHeJ_T0020025.1 MGP_C3HHeJ_G0015870.1 mouse_genomes_project 1 64942591 64962619 - MGP_C3HHeJ_P0020025 Akr1cl protein_coding protein_coding MGP_C3HHeJ_T0020026.1 MGP_C3HHeJ_G0015870.1 mouse_genomes_project 1 64944364 64946438 - Akr1cl protein_coding retained_intron MGP_C3HHeJ_T0020027.1 MGP_C3HHeJ_G0015870.1 mouse_genomes_project 1 64945962 64962546 - MGP_C3HHeJ_P0020027 Akr1cl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020028.1 MGP_C3HHeJ_G0015870.1 mouse_genomes_project 1 64957549 64962592 - Akr1cl protein_coding processed_transcript MGP_C3HHeJ_T0020029.1 MGP_C3HHeJ_G0015870.1 mouse_genomes_project 1 64959391 64962608 - Akr1cl protein_coding retained_intron MGP_C3HHeJ_T0101578.1 MGP_C3HHeJ_G0039544.1 mouse_genomes_project 1 108906107 108908660 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016782.1 MGP_C3HHeJ_G0014864.1 mouse_genomes_project 1 87067776 87076205 + C130036L24Rik processed_transcript retained_intron MGP_C3HHeJ_T0016783.1 MGP_C3HHeJ_G0014864.1 mouse_genomes_project 1 87067786 87082981 + C130036L24Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016784.1 MGP_C3HHeJ_G0014864.1 mouse_genomes_project 1 87067790 87070973 + C130036L24Rik processed_transcript retained_intron MGP_C3HHeJ_T0016854.1 MGP_C3HHeJ_G0014881.1 mouse_genomes_project 1 168517638 168528738 + Gm20743 processed_transcript lincRNA MGP_C3HHeJ_T0016855.1 MGP_C3HHeJ_G0014881.1 mouse_genomes_project 1 168517863 168590726 + Gm20743 processed_transcript antisense MGP_C3HHeJ_T0018804.1 MGP_C3HHeJ_G0015635.1 mouse_genomes_project 1 15537095 15569979 - Crisp4 protein_coding retained_intron MGP_C3HHeJ_T0018805.1 MGP_C3HHeJ_G0015635.1 mouse_genomes_project 1 15537095 15569985 - MGP_C3HHeJ_P0018805 Crisp4 protein_coding protein_coding MGP_C3HHeJ_T0018806.1 MGP_C3HHeJ_G0015635.1 mouse_genomes_project 1 15537108 15559529 - MGP_C3HHeJ_P0018806 Crisp4 protein_coding protein_coding MGP_C3HHeJ_T0018807.1 MGP_C3HHeJ_G0015635.1 mouse_genomes_project 1 15537504 15569985 - MGP_C3HHeJ_P0018807 Crisp4 protein_coding protein_coding MGP_C3HHeJ_T0023389.1 MGP_C3HHeJ_G0016568.1 mouse_genomes_project 1 177594648 177595639 + MGP_C3HHeJ_P0023389 Olfr418 protein_coding protein_coding MGP_C3HHeJ_T0022836.1 MGP_C3HHeJ_G0016433.1 mouse_genomes_project 1 166512649 166535215 - MGP_C3HHeJ_P0022836 Fmo6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022837.1 MGP_C3HHeJ_G0016433.1 mouse_genomes_project 1 166512821 166534918 - MGP_C3HHeJ_P0022837 Fmo6 protein_coding protein_coding MGP_C3HHeJ_T0023253.1 MGP_C3HHeJ_G0016531.1 mouse_genomes_project 1 175862440 175882742 - MGP_C3HHeJ_P0023253 Ly9 protein_coding protein_coding MGP_C3HHeJ_T0023254.1 MGP_C3HHeJ_G0016531.1 mouse_genomes_project 1 175862449 175882690 - MGP_C3HHeJ_P0023254 Ly9 protein_coding protein_coding MGP_C3HHeJ_T0023255.1 MGP_C3HHeJ_G0016531.1 mouse_genomes_project 1 175862465 175882666 - MGP_C3HHeJ_P0023255 Ly9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023256.1 MGP_C3HHeJ_G0016531.1 mouse_genomes_project 1 175866100 175882661 - MGP_C3HHeJ_P0023256 Ly9 protein_coding protein_coding MGP_C3HHeJ_T0023257.1 MGP_C3HHeJ_G0016531.1 mouse_genomes_project 1 175875030 175882692 - Ly9 protein_coding retained_intron MGP_C3HHeJ_T0012174.1 MGP_C3HHeJ_G0010278.1 mouse_genomes_project 1 152010766 152011249 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020989.1 MGP_C3HHeJ_G0016060.1 mouse_genomes_project 1 91225137 91237909 + MGP_C3HHeJ_P0020989 Ackr3 protein_coding protein_coding MGP_C3HHeJ_T0020990.1 MGP_C3HHeJ_G0016060.1 mouse_genomes_project 1 91225163 91234991 + MGP_C3HHeJ_P0020990 Ackr3 protein_coding protein_coding MGP_C3HHeJ_T0021764.1 MGP_C3HHeJ_G0016232.1 mouse_genomes_project 1 134381075 134401074 + MGP_C3HHeJ_P0021764 Slc45a3 protein_coding protein_coding MGP_C3HHeJ_T0021765.1 MGP_C3HHeJ_G0016232.1 mouse_genomes_project 1 134388713 134401069 + MGP_C3HHeJ_P0021765 Slc45a3 protein_coding protein_coding MGP_C3HHeJ_T0021766.1 MGP_C3HHeJ_G0016232.1 mouse_genomes_project 1 134394823 134396050 + MGP_C3HHeJ_P0021766 Slc45a3 protein_coding protein_coding MGP_C3HHeJ_T0021767.1 MGP_C3HHeJ_G0016232.1 mouse_genomes_project 1 134397068 134400011 + Slc45a3 protein_coding processed_transcript MGP_C3HHeJ_T0023884.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194232537 194272256 - MGP_C3HHeJ_P0023884 Kctd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023885.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194232537 194272268 - MGP_C3HHeJ_P0023885 Kctd3 protein_coding protein_coding MGP_C3HHeJ_T0023886.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194233693 194236065 - Kctd3 protein_coding retained_intron MGP_C3HHeJ_T0023887.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194233806 194235683 - Kctd3 protein_coding retained_intron MGP_C3HHeJ_T0023888.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194233918 194240927 - MGP_C3HHeJ_P0023888 Kctd3 protein_coding protein_coding MGP_C3HHeJ_T0023889.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194233961 194235182 - Kctd3 protein_coding retained_intron MGP_C3HHeJ_T0023890.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194235243 194238940 - Kctd3 protein_coding processed_transcript MGP_C3HHeJ_T0023891.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194240877 194244137 - Kctd3 protein_coding retained_intron MGP_C3HHeJ_T0023892.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194243127 194272269 - Kctd3 protein_coding retained_intron MGP_C3HHeJ_T0023893.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194259453 194261859 - Kctd3 protein_coding retained_intron MGP_C3HHeJ_T0023556.1 MGP_C3HHeJ_G0016620.1 mouse_genomes_project 1 184459754 184479202 - MGP_C3HHeJ_P0023556 protein_coding protein_coding MGP_C3HHeJ_T0023558.1 MGP_C3HHeJ_G0016620.1 mouse_genomes_project 1 184460951 184466141 - protein_coding processed_transcript MGP_C3HHeJ_T0023559.1 MGP_C3HHeJ_G0016620.1 mouse_genomes_project 1 184461312 184466287 - protein_coding processed_transcript MGP_C3HHeJ_T0023560.1 MGP_C3HHeJ_G0016620.1 mouse_genomes_project 1 184463687 184479152 - protein_coding processed_transcript MGP_C3HHeJ_T0023561.1 MGP_C3HHeJ_G0016620.1 mouse_genomes_project 1 184466128 184478598 - protein_coding processed_transcript MGP_C3HHeJ_T0022575.1 MGP_C3HHeJ_G0016391.1 mouse_genomes_project 1 159887573 159958818 + MGP_C3HHeJ_P0022575 Abl2 protein_coding protein_coding MGP_C3HHeJ_T0022576.1 MGP_C3HHeJ_G0016391.1 mouse_genomes_project 1 159887774 159984801 + MGP_C3HHeJ_P0022576 Abl2 protein_coding protein_coding MGP_C3HHeJ_T0022577.1 MGP_C3HHeJ_G0016391.1 mouse_genomes_project 1 159887836 159977959 + MGP_C3HHeJ_P0022577 Abl2 protein_coding protein_coding MGP_C3HHeJ_T0022578.1 MGP_C3HHeJ_G0016391.1 mouse_genomes_project 1 159949207 159963600 + MGP_C3HHeJ_P0022578 Abl2 protein_coding protein_coding MGP_C3HHeJ_T0000662.1 MGP_C3HHeJ_G0000607.1 mouse_genomes_project 1 159610268 159610905 - TEC TEC MGP_C3HHeJ_T0011831.1 MGP_C3HHeJ_G0009935.1 mouse_genomes_project 1 20923646 20924290 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012056.1 MGP_C3HHeJ_G0010160.1 mouse_genomes_project 1 99616231 99617215 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005619.1 MGP_C3HHeJ_G0004721.1 mouse_genomes_project 1 40046792 40049904 - Gm28634 lincRNA lincRNA MGP_C3HHeJ_T0024108.1 MGP_C3HHeJ_G0016727.1 mouse_genomes_project 1 200441309 200463810 + MGP_C3HHeJ_P0024108 Cd34 protein_coding protein_coding MGP_C3HHeJ_T0024109.1 MGP_C3HHeJ_G0016727.1 mouse_genomes_project 1 200441365 200463810 + MGP_C3HHeJ_P0024109 Cd34 protein_coding protein_coding MGP_C3HHeJ_T0024110.1 MGP_C3HHeJ_G0016727.1 mouse_genomes_project 1 200441395 200453261 + Cd34 protein_coding retained_intron MGP_C3HHeJ_T0024111.1 MGP_C3HHeJ_G0016727.1 mouse_genomes_project 1 200441441 200443720 + Cd34 protein_coding retained_intron MGP_C3HHeJ_T0024112.1 MGP_C3HHeJ_G0016727.1 mouse_genomes_project 1 200441485 200461081 + MGP_C3HHeJ_P0024112 Cd34 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012199.1 MGP_C3HHeJ_G0010303.1 mouse_genomes_project 1 160998323 160998845 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023680.1 MGP_C3HHeJ_G0016644.1 mouse_genomes_project 1 186116015 186175739 - MGP_C3HHeJ_P0023680 Nvl protein_coding protein_coding MGP_C3HHeJ_T0023681.1 MGP_C3HHeJ_G0016644.1 mouse_genomes_project 1 186120880 186122997 - Nvl protein_coding processed_transcript MGP_C3HHeJ_T0023682.1 MGP_C3HHeJ_G0016644.1 mouse_genomes_project 1 186122487 186124754 - Nvl protein_coding retained_intron MGP_C3HHeJ_T0023683.1 MGP_C3HHeJ_G0016644.1 mouse_genomes_project 1 186125210 186134371 - Nvl protein_coding retained_intron MGP_C3HHeJ_T0023684.1 MGP_C3HHeJ_G0016644.1 mouse_genomes_project 1 186166482 186168977 - Nvl protein_coding retained_intron MGP_C3HHeJ_T0099882.1 MGP_C3HHeJ_G0038076.1 mouse_genomes_project 1 129600400 129600509 + Gm23734 snoRNA snoRNA MGP_C3HHeJ_T0097963.1 MGP_C3HHeJ_G0036175.1 mouse_genomes_project 1 106500635 106500747 - n-R5s216 rRNA rRNA MGP_C3HHeJ_T0022909.1 MGP_C3HHeJ_G0016455.1 mouse_genomes_project 1 168860101 168884263 - MGP_C3HHeJ_P0022909 Sft2d2 protein_coding protein_coding MGP_C3HHeJ_T0022910.1 MGP_C3HHeJ_G0016455.1 mouse_genomes_project 1 168861635 168884146 - MGP_C3HHeJ_P0022910 Sft2d2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022911.1 MGP_C3HHeJ_G0016455.1 mouse_genomes_project 1 168865002 168884142 - MGP_C3HHeJ_P0022911 Sft2d2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018996.1 MGP_C3HHeJ_G0015679.1 mouse_genomes_project 1 32620190 32628180 - MGP_C3HHeJ_P0018996 Ccdc115 protein_coding protein_coding MGP_C3HHeJ_T0018997.1 MGP_C3HHeJ_G0015679.1 mouse_genomes_project 1 32620198 32622908 - Ccdc115 protein_coding retained_intron MGP_C3HHeJ_T0005696.1 MGP_C3HHeJ_G0004775.1 mouse_genomes_project 1 72109083 72112877 + Gm8883 lincRNA lincRNA MGP_C3HHeJ_T0005697.1 MGP_C3HHeJ_G0004775.1 mouse_genomes_project 1 72109088 72112408 + Gm8883 lincRNA lincRNA MGP_C3HHeJ_T0005698.1 MGP_C3HHeJ_G0004775.1 mouse_genomes_project 1 72109373 72110809 + Gm8883 lincRNA lincRNA MGP_C3HHeJ_T0005699.1 MGP_C3HHeJ_G0004775.1 mouse_genomes_project 1 72109474 72112260 + Gm8883 lincRNA lincRNA MGP_C3HHeJ_T0022340.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154540670 154604106 - MGP_C3HHeJ_P0022340 Swt1 protein_coding protein_coding MGP_C3HHeJ_T0022341.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154541333 154604087 - MGP_C3HHeJ_P0022341 Swt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022342.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154543378 154545328 - Swt1 protein_coding retained_intron MGP_C3HHeJ_T0022343.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154552574 154557628 - Swt1 protein_coding retained_intron MGP_C3HHeJ_T0022344.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154564498 154577973 - MGP_C3HHeJ_P0022344 Swt1 protein_coding protein_coding MGP_C3HHeJ_T0022345.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154574961 154599261 - MGP_C3HHeJ_P0022345 Swt1 protein_coding protein_coding MGP_C3HHeJ_T0022346.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154575596 154579534 - Swt1 protein_coding retained_intron MGP_C3HHeJ_T0022347.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154586068 154587890 - Swt1 protein_coding retained_intron MGP_C3HHeJ_T0022348.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154591230 154599046 - Swt1 protein_coding retained_intron MGP_C3HHeJ_T0022349.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154602674 154604106 - Swt1 protein_coding retained_intron MGP_C3HHeJ_T0023406.1 MGP_C3HHeJ_G0016574.1 mouse_genomes_project 1 178161738 178205281 + MGP_C3HHeJ_P0023406 protein_coding protein_coding MGP_C3HHeJ_T0012275.1 MGP_C3HHeJ_G0010379.1 mouse_genomes_project 1 199310424 199311352 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000715.1 MGP_C3HHeJ_G0000660.1 mouse_genomes_project 1 180551223 180553167 - TEC TEC MGP_C3HHeJ_T0020011.1 MGP_C3HHeJ_G0015867.1 mouse_genomes_project 1 64612953 64650583 + MGP_C3HHeJ_P0020011 Ccnyl1 protein_coding protein_coding MGP_C3HHeJ_T0020012.1 MGP_C3HHeJ_G0015867.1 mouse_genomes_project 1 64613320 64648885 + MGP_C3HHeJ_P0020012 Ccnyl1 protein_coding protein_coding MGP_C3HHeJ_T0020013.1 MGP_C3HHeJ_G0015867.1 mouse_genomes_project 1 64613686 64635319 + MGP_C3HHeJ_P0020013 Ccnyl1 protein_coding protein_coding MGP_C3HHeJ_T0020014.1 MGP_C3HHeJ_G0015867.1 mouse_genomes_project 1 64613848 64650579 + MGP_C3HHeJ_P0020014 Ccnyl1 protein_coding protein_coding MGP_C3HHeJ_T0020015.1 MGP_C3HHeJ_G0015867.1 mouse_genomes_project 1 64624829 64648578 + MGP_C3HHeJ_P0020015 Ccnyl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0000777.1 MGP_C3HHeJ_G0000719.1 mouse_genomes_project 1 200495867 200498804 + TEC TEC MGP_C3HHeJ_T0022418.1 MGP_C3HHeJ_G0016362.1 mouse_genomes_project 1 156444087 156569790 - MGP_C3HHeJ_P0022418 Lamc1 protein_coding protein_coding MGP_C3HHeJ_T0022419.1 MGP_C3HHeJ_G0016362.1 mouse_genomes_project 1 156444087 156455024 - MGP_C3HHeJ_P0022419 Lamc1 protein_coding protein_coding MGP_C3HHeJ_T0022420.1 MGP_C3HHeJ_G0016362.1 mouse_genomes_project 1 156454640 156455298 - Lamc1 protein_coding retained_intron MGP_C3HHeJ_T0022421.1 MGP_C3HHeJ_G0016362.1 mouse_genomes_project 1 156454694 156465213 - MGP_C3HHeJ_P0022421 Lamc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022422.1 MGP_C3HHeJ_G0016362.1 mouse_genomes_project 1 156474499 156476344 - Lamc1 protein_coding retained_intron MGP_C3HHeJ_T0018568.1 MGP_C3HHeJ_G0015593.1 mouse_genomes_project 1 4212648 4308228 + MGP_C3HHeJ_P0018568 Pcmtd1 protein_coding protein_coding MGP_C3HHeJ_T0018569.1 MGP_C3HHeJ_G0015593.1 mouse_genomes_project 1 4212698 4295483 + Pcmtd1 protein_coding processed_transcript MGP_C3HHeJ_T0018570.1 MGP_C3HHeJ_G0015593.1 mouse_genomes_project 1 4212760 4306720 + Pcmtd1 protein_coding processed_transcript MGP_C3HHeJ_T0018571.1 MGP_C3HHeJ_G0015593.1 mouse_genomes_project 1 4279387 4304674 + MGP_C3HHeJ_P0018571 Pcmtd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018572.1 MGP_C3HHeJ_G0015593.1 mouse_genomes_project 1 4286619 4297952 + Pcmtd1 protein_coding retained_intron MGP_C3HHeJ_T0018573.1 MGP_C3HHeJ_G0015593.1 mouse_genomes_project 1 4294665 4307216 + Pcmtd1 protein_coding retained_intron MGP_C3HHeJ_T0018574.1 MGP_C3HHeJ_G0015593.1 mouse_genomes_project 1 4295137 4307257 + Pcmtd1 protein_coding retained_intron MGP_C3HHeJ_T0021844.1 MGP_C3HHeJ_G0016246.1 mouse_genomes_project 1 135338540 135398221 + MGP_C3HHeJ_P0021844 Lrrn2 protein_coding protein_coding MGP_C3HHeJ_T0021845.1 MGP_C3HHeJ_G0016246.1 mouse_genomes_project 1 135338622 135395366 + Lrrn2 protein_coding processed_transcript MGP_C3HHeJ_T0000773.1 MGP_C3HHeJ_G0000715.1 mouse_genomes_project 1 200144302 200146166 + TEC TEC MGP_C3HHeJ_T0023971.1 MGP_C3HHeJ_G0016701.1 mouse_genomes_project 1 196546028 196548262 - MGP_C3HHeJ_P0023971 Fam71a protein_coding protein_coding MGP_C3HHeJ_T0002796.1 MGP_C3HHeJ_G0002648.1 mouse_genomes_project 1 98224534 98264579 + Panct2 antisense antisense MGP_C3HHeJ_T0002797.1 MGP_C3HHeJ_G0002648.1 mouse_genomes_project 1 98225629 98235998 + Panct2 antisense antisense MGP_C3HHeJ_T0002798.1 MGP_C3HHeJ_G0002648.1 mouse_genomes_project 1 98225641 98232665 + Panct2 antisense antisense MGP_C3HHeJ_T0019265.1 MGP_C3HHeJ_G0015728.1 mouse_genomes_project 1 37791820 37906716 - MGP_C3HHeJ_P0019265 Tbc1d8 protein_coding protein_coding MGP_C3HHeJ_T0019266.1 MGP_C3HHeJ_G0015728.1 mouse_genomes_project 1 37792192 37792770 - MGP_C3HHeJ_P0019266 Tbc1d8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019267.1 MGP_C3HHeJ_G0015728.1 mouse_genomes_project 1 37792632 37906622 - MGP_C3HHeJ_P0019267 Tbc1d8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019268.1 MGP_C3HHeJ_G0015728.1 mouse_genomes_project 1 37793624 37906661 - MGP_C3HHeJ_P0019268 Tbc1d8 protein_coding protein_coding MGP_C3HHeJ_T0019269.1 MGP_C3HHeJ_G0015728.1 mouse_genomes_project 1 37811529 37812965 - Tbc1d8 protein_coding retained_intron MGP_C3HHeJ_T0012050.1 MGP_C3HHeJ_G0010154.1 mouse_genomes_project 1 94601110 94601899 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000544.1 MGP_C3HHeJ_G0000491.1 mouse_genomes_project 1 98913381 98914566 - TEC TEC MGP_C3HHeJ_T0009379.1 MGP_C3HHeJ_G0007512.1 mouse_genomes_project 1 10497393 10497475 + Gm27881 miRNA miRNA MGP_C3HHeJ_T0021124.1 MGP_C3HHeJ_G0016089.1 mouse_genomes_project 1 93773055 93774111 + MGP_C3HHeJ_P0021124 Olfr12 protein_coding protein_coding MGP_C3HHeJ_T0002895.1 MGP_C3HHeJ_G0002722.1 mouse_genomes_project 1 182077063 182077810 - Gm26801 antisense antisense MGP_C3HHeJ_T0002896.1 MGP_C3HHeJ_G0002722.1 mouse_genomes_project 1 182077772 182093361 - Gm26801 antisense antisense MGP_C3HHeJ_T0016798.1 MGP_C3HHeJ_G0014870.1 mouse_genomes_project 1 134913060 134925042 - 6030442K20Rik processed_transcript antisense MGP_C3HHeJ_T0016799.1 MGP_C3HHeJ_G0014870.1 mouse_genomes_project 1 134924055 134925061 - 6030442K20Rik processed_transcript retained_intron MGP_C3HHeJ_T0005755.1 MGP_C3HHeJ_G0004818.1 mouse_genomes_project 1 91173930 91180525 + 4930434B07Rik lincRNA lincRNA MGP_C3HHeJ_T0000510.1 MGP_C3HHeJ_G0000457.1 mouse_genomes_project 1 84009300 84010103 - TEC TEC MGP_C3HHeJ_T0012093.1 MGP_C3HHeJ_G0010197.1 mouse_genomes_project 1 113917917 113918480 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000373.1 MGP_C3HHeJ_G0000321.1 mouse_genomes_project 1 21726567 21729373 + TEC TEC MGP_C3HHeJ_T0009383.1 MGP_C3HHeJ_G0007516.1 mouse_genomes_project 1 20858936 20859007 + Mir30a miRNA miRNA MGP_C3HHeJ_T0002910.1 MGP_C3HHeJ_G0002734.1 mouse_genomes_project 1 190607536 190619990 - 9630028B13Rik antisense antisense MGP_C3HHeJ_T0099888.1 MGP_C3HHeJ_G0038082.1 mouse_genomes_project 1 140427461 140427577 + Gm22727 snoRNA snoRNA MGP_C3HHeJ_T0005754.1 MGP_C3HHeJ_G0004817.1 mouse_genomes_project 1 90350567 90398641 - C030007H22Rik lincRNA lincRNA MGP_C3HHeJ_T0000346.1 MGP_C3HHeJ_G0000296.1 mouse_genomes_project 1 8865278 8867423 + TEC TEC MGP_C3HHeJ_T0021559.1 MGP_C3HHeJ_G0016185.1 mouse_genomes_project 1 127865610 128072824 + MGP_C3HHeJ_P0021559 Gpr39 protein_coding protein_coding MGP_C3HHeJ_T0021560.1 MGP_C3HHeJ_G0016185.1 mouse_genomes_project 1 128037488 128072135 + Gpr39 protein_coding processed_transcript MGP_C3HHeJ_T0021472.1 MGP_C3HHeJ_G0016165.1 mouse_genomes_project 1 121549967 121552791 + MGP_C3HHeJ_P0021472 Tmem185b protein_coding protein_coding MGP_C3HHeJ_T0021473.1 MGP_C3HHeJ_G0016165.1 mouse_genomes_project 1 121549980 121551037 + Tmem185b protein_coding processed_transcript MGP_C3HHeJ_T0021112.1 MGP_C3HHeJ_G0016082.1 mouse_genomes_project 1 93581048 93581808 - MGP_C3HHeJ_P0021112 Olfr1416 protein_coding protein_coding MGP_C3HHeJ_T0021113.1 MGP_C3HHeJ_G0016082.1 mouse_genomes_project 1 93581048 93587718 - MGP_C3HHeJ_P0021113 Olfr1416 protein_coding protein_coding MGP_C3HHeJ_T0012127.1 MGP_C3HHeJ_G0010231.1 mouse_genomes_project 1 125410664 125413298 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011922.1 MGP_C3HHeJ_G0010026.1 mouse_genomes_project 1 48292557 48292772 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022027.1 MGP_C3HHeJ_G0016287.1 mouse_genomes_project 1 137728023 137735467 - MGP_C3HHeJ_P0022027 Gpr37l1 protein_coding protein_coding MGP_C3HHeJ_T0023244.1 MGP_C3HHeJ_G0016527.1 mouse_genomes_project 1 175369738 175407546 + MGP_C3HHeJ_P0023244 F11r protein_coding protein_coding MGP_C3HHeJ_T0023245.1 MGP_C3HHeJ_G0016527.1 mouse_genomes_project 1 175369782 175401857 + F11r protein_coding retained_intron MGP_C3HHeJ_T0023246.1 MGP_C3HHeJ_G0016527.1 mouse_genomes_project 1 175369844 175405194 + MGP_C3HHeJ_P0023246 F11r protein_coding unknown_likely_coding MGP_C3HHeJ_T0023247.1 MGP_C3HHeJ_G0016527.1 mouse_genomes_project 1 175404849 175405644 + F11r protein_coding retained_intron MGP_C3HHeJ_T0011804.1 MGP_C3HHeJ_G0009908.1 mouse_genomes_project 1 13102892 13102992 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000559.1 MGP_C3HHeJ_G0000506.1 mouse_genomes_project 1 121654897 121655823 - TEC TEC MGP_C3HHeJ_T0002730.1 MGP_C3HHeJ_G0002596.1 mouse_genomes_project 1 39253927 39269024 + Gm37915 antisense antisense MGP_C3HHeJ_T0016777.1 MGP_C3HHeJ_G0014861.1 mouse_genomes_project 1 75191842 75219086 + Gm16582 processed_transcript processed_transcript MGP_C3HHeJ_T0011929.1 MGP_C3HHeJ_G0010033.1 mouse_genomes_project 1 49718140 49718302 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002784.1 MGP_C3HHeJ_G0002636.1 mouse_genomes_project 1 88701419 88702372 - Gm19582 antisense antisense MGP_C3HHeJ_T0022048.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137961612 138011730 - MGP_C3HHeJ_P0022048 Ipo9 protein_coding protein_coding MGP_C3HHeJ_T0022049.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137963762 138011689 - MGP_C3HHeJ_P0022049 Ipo9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022050.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137963762 138011722 - MGP_C3HHeJ_P0022050 Ipo9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022051.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137964405 137967899 - MGP_C3HHeJ_P0022051 Ipo9 protein_coding protein_coding MGP_C3HHeJ_T0022052.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137965093 137967854 - Ipo9 protein_coding retained_intron MGP_C3HHeJ_T0022053.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137965575 137968005 - Ipo9 protein_coding retained_intron MGP_C3HHeJ_T0022054.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137965680 137966854 - Ipo9 protein_coding retained_intron MGP_C3HHeJ_T0022055.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137967920 137969098 - Ipo9 protein_coding retained_intron MGP_C3HHeJ_T0022056.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137968741 137983339 - Ipo9 protein_coding processed_transcript MGP_C3HHeJ_T0022057.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137973414 137983430 - Ipo9 protein_coding retained_intron MGP_C3HHeJ_T0022058.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137982315 138011664 - MGP_C3HHeJ_P0022058 Ipo9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022059.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137985989 137987109 - Ipo9 protein_coding retained_intron MGP_C3HHeJ_T0022060.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137986439 138000320 - Ipo9 protein_coding retained_intron MGP_C3HHeJ_T0022061.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137987825 138011650 - MGP_C3HHeJ_P0022061 Ipo9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011947.1 MGP_C3HHeJ_G0010051.1 mouse_genomes_project 1 54877729 54878077 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020634.1 MGP_C3HHeJ_G0015980.1 mouse_genomes_project 1 81550659 81793335 + MGP_C3HHeJ_P0020634 Nyap2 protein_coding protein_coding MGP_C3HHeJ_T0020635.1 MGP_C3HHeJ_G0015980.1 mouse_genomes_project 1 81550908 81793310 + MGP_C3HHeJ_P0020635 Nyap2 protein_coding protein_coding MGP_C3HHeJ_T0020636.1 MGP_C3HHeJ_G0015980.1 mouse_genomes_project 1 81551010 81765139 + MGP_C3HHeJ_P0020636 Nyap2 protein_coding protein_coding MGP_C3HHeJ_T0020637.1 MGP_C3HHeJ_G0015980.1 mouse_genomes_project 1 81551017 81794497 + MGP_C3HHeJ_P0020637 Nyap2 protein_coding protein_coding MGP_C3HHeJ_T0020638.1 MGP_C3HHeJ_G0015980.1 mouse_genomes_project 1 81551276 81840530 + MGP_C3HHeJ_P0020638 Nyap2 protein_coding protein_coding MGP_C3HHeJ_T0000680.1 MGP_C3HHeJ_G0000625.1 mouse_genomes_project 1 164104235 164107778 - TEC TEC MGP_C3HHeJ_T0011764.1 MGP_C3HHeJ_G0009868.1 mouse_genomes_project 1 3484085 3484558 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018827.1 MGP_C3HHeJ_G0015643.1 mouse_genomes_project 1 18266620 18284116 - MGP_C3HHeJ_P0018827 Mcm3 protein_coding protein_coding MGP_C3HHeJ_T0018828.1 MGP_C3HHeJ_G0015643.1 mouse_genomes_project 1 18266625 18284064 - Mcm3 protein_coding retained_intron MGP_C3HHeJ_T0018829.1 MGP_C3HHeJ_G0015643.1 mouse_genomes_project 1 18266658 18267373 - Mcm3 protein_coding retained_intron MGP_C3HHeJ_T0018830.1 MGP_C3HHeJ_G0015643.1 mouse_genomes_project 1 18266817 18268569 - Mcm3 protein_coding retained_intron MGP_C3HHeJ_T0018831.1 MGP_C3HHeJ_G0015643.1 mouse_genomes_project 1 18268332 18269576 - Mcm3 protein_coding retained_intron MGP_C3HHeJ_T0023649.1 MGP_C3HHeJ_G0016634.1 mouse_genomes_project 1 185679357 185685001 - MGP_C3HHeJ_P0023649 Mixl1 protein_coding protein_coding MGP_C3HHeJ_T0009408.1 MGP_C3HHeJ_G0007541.1 mouse_genomes_project 1 63135973 63136111 - Gm24513 miRNA miRNA MGP_C3HHeJ_T0011894.1 MGP_C3HHeJ_G0009998.1 mouse_genomes_project 1 42441542 42442821 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000388.1 MGP_C3HHeJ_G0000336.1 mouse_genomes_project 1 23458355 23462905 - TEC TEC MGP_C3HHeJ_T0019809.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58858562 58895959 - MGP_C3HHeJ_P0019809 Mpp4 protein_coding protein_coding MGP_C3HHeJ_T0019810.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58858562 58898927 - MGP_C3HHeJ_P0019810 Mpp4 protein_coding protein_coding MGP_C3HHeJ_T0019811.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58858562 58900680 - MGP_C3HHeJ_P0019811 Mpp4 protein_coding protein_coding MGP_C3HHeJ_T0019812.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58858563 58898927 - MGP_C3HHeJ_P0019812 Mpp4 protein_coding protein_coding MGP_C3HHeJ_T0019813.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58858567 58883309 - Mpp4 protein_coding processed_transcript MGP_C3HHeJ_T0019814.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58858771 58895952 - MGP_C3HHeJ_P0019814 Mpp4 protein_coding protein_coding MGP_C3HHeJ_T0019815.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58858880 58898858 - Mpp4 protein_coding retained_intron MGP_C3HHeJ_T0019816.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58876760 58890627 - Mpp4 protein_coding retained_intron MGP_C3HHeJ_T0019817.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58876762 58888914 - Mpp4 protein_coding retained_intron MGP_C3HHeJ_T0019818.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58886368 58898863 - Mpp4 protein_coding retained_intron MGP_C3HHeJ_T0005929.1 MGP_C3HHeJ_G0004960.1 mouse_genomes_project 1 185480893 185492158 - Gm37267 lincRNA lincRNA MGP_C3HHeJ_T0021376.1 MGP_C3HHeJ_G0016142.1 mouse_genomes_project 1 108624604 108647957 + MGP_C3HHeJ_P0021376 Serpinb12 protein_coding protein_coding MGP_C3HHeJ_T0021377.1 MGP_C3HHeJ_G0016142.1 mouse_genomes_project 1 108629914 108647957 + MGP_C3HHeJ_P0021377 Serpinb12 protein_coding protein_coding MGP_C3HHeJ_T0021378.1 MGP_C3HHeJ_G0016142.1 mouse_genomes_project 1 108629916 108641335 + Serpinb12 protein_coding retained_intron MGP_C3HHeJ_T0005626.1 MGP_C3HHeJ_G0004726.1 mouse_genomes_project 1 40917980 40942662 - Gm28140 lincRNA lincRNA MGP_C3HHeJ_T0011909.1 MGP_C3HHeJ_G0010013.1 mouse_genomes_project 1 44562360 44565364 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012101.1 MGP_C3HHeJ_G0010205.1 mouse_genomes_project 1 115488105 115488841 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011163.1 MGP_C3HHeJ_G0009296.1 mouse_genomes_project 1 169190131 169190382 - Gm23599 misc_RNA misc_RNA MGP_C3HHeJ_T0011793.1 MGP_C3HHeJ_G0009897.1 mouse_genomes_project 1 7952756 7953979 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011830.1 MGP_C3HHeJ_G0009934.1 mouse_genomes_project 1 20554506 20558077 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011986.1 MGP_C3HHeJ_G0010090.1 mouse_genomes_project 1 64862992 64863371 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022859.1 MGP_C3HHeJ_G0016441.1 mouse_genomes_project 1 167564567 167616891 - MGP_C3HHeJ_P0022859 BC055324 protein_coding protein_coding MGP_C3HHeJ_T0022861.1 MGP_C3HHeJ_G0016441.1 mouse_genomes_project 1 167572328 167616891 - MGP_C3HHeJ_P0022861 BC055324 protein_coding protein_coding MGP_C3HHeJ_T0022862.1 MGP_C3HHeJ_G0016441.1 mouse_genomes_project 1 167572849 167582045 - MGP_C3HHeJ_P0022862 BC055324 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022863.1 MGP_C3HHeJ_G0016441.1 mouse_genomes_project 1 167588667 167593875 - BC055324 protein_coding retained_intron MGP_C3HHeJ_T0022864.1 MGP_C3HHeJ_G0016441.1 mouse_genomes_project 1 167608984 167616859 - MGP_C3HHeJ_P0022864 BC055324 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022865.1 MGP_C3HHeJ_G0016441.1 mouse_genomes_project 1 167611832 167616636 - BC055324 protein_coding processed_transcript MGP_C3HHeJ_T0016858.1 MGP_C3HHeJ_G0014883.1 mouse_genomes_project 1 173765879 173767400 - Gm15852 processed_transcript processed_transcript MGP_C3HHeJ_T0020345.1 MGP_C3HHeJ_G0015933.1 mouse_genomes_project 1 75195879 75198678 + MGP_C3HHeJ_P0020345 Cdk5r2 protein_coding protein_coding MGP_C3HHeJ_T0021757.1 MGP_C3HHeJ_G0016230.1 mouse_genomes_project 1 134273436 134280081 + MGP_C3HHeJ_P0021757 Rab29 protein_coding protein_coding MGP_C3HHeJ_T0021758.1 MGP_C3HHeJ_G0016230.1 mouse_genomes_project 1 134273452 134280229 + MGP_C3HHeJ_P0021758 Rab29 protein_coding protein_coding MGP_C3HHeJ_T0021759.1 MGP_C3HHeJ_G0016230.1 mouse_genomes_project 1 134273723 134279844 + MGP_C3HHeJ_P0021759 Rab29 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021760.1 MGP_C3HHeJ_G0016230.1 mouse_genomes_project 1 134273865 134277189 + Rab29 protein_coding retained_intron MGP_C3HHeJ_T0020037.1 MGP_C3HHeJ_G0015876.1 mouse_genomes_project 1 65038003 65058059 - MGP_C3HHeJ_P0020037 D630023F18Rik protein_coding protein_coding MGP_C3HHeJ_T0020038.1 MGP_C3HHeJ_G0015876.1 mouse_genomes_project 1 65040031 65058038 - MGP_C3HHeJ_P0020038 D630023F18Rik protein_coding protein_coding MGP_C3HHeJ_T0020039.1 MGP_C3HHeJ_G0015876.1 mouse_genomes_project 1 65041434 65057959 - MGP_C3HHeJ_P0020039 D630023F18Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000582.1 MGP_C3HHeJ_G0000529.1 mouse_genomes_project 1 130216931 130222921 - TEC TEC MGP_C3HHeJ_T0021700.1 MGP_C3HHeJ_G0016216.1 mouse_genomes_project 1 133406800 133411929 + MGP_C3HHeJ_P0021700 Il10 protein_coding protein_coding MGP_C3HHeJ_T0021635.1 MGP_C3HHeJ_G0016197.1 mouse_genomes_project 1 130531814 130575026 - MGP_C3HHeJ_P0021635 Lct protein_coding protein_coding MGP_C3HHeJ_T0021636.1 MGP_C3HHeJ_G0016197.1 mouse_genomes_project 1 130534629 130540314 - Lct protein_coding retained_intron MGP_C3HHeJ_T0018722.1 MGP_C3HHeJ_G0015617.1 mouse_genomes_project 1 11433991 11584108 - MGP_C3HHeJ_P0018722 Eya1 protein_coding protein_coding MGP_C3HHeJ_T0018723.1 MGP_C3HHeJ_G0015617.1 mouse_genomes_project 1 11433995 11584143 - MGP_C3HHeJ_P0018723 Eya1 protein_coding protein_coding MGP_C3HHeJ_T0018724.1 MGP_C3HHeJ_G0015617.1 mouse_genomes_project 1 11434703 11584027 - MGP_C3HHeJ_P0018724 Eya1 protein_coding protein_coding MGP_C3HHeJ_T0018725.1 MGP_C3HHeJ_G0015617.1 mouse_genomes_project 1 11435680 11578470 - MGP_C3HHeJ_P0018725 Eya1 protein_coding protein_coding MGP_C3HHeJ_T0018726.1 MGP_C3HHeJ_G0015617.1 mouse_genomes_project 1 11474599 11503138 - MGP_C3HHeJ_P0018726 Eya1 protein_coding protein_coding MGP_C3HHeJ_T0018727.1 MGP_C3HHeJ_G0015617.1 mouse_genomes_project 1 11525494 11578519 - MGP_C3HHeJ_P0018727 Eya1 protein_coding protein_coding MGP_C3HHeJ_T0018728.1 MGP_C3HHeJ_G0015617.1 mouse_genomes_project 1 11543265 11578528 - MGP_C3HHeJ_P0018728 Eya1 protein_coding protein_coding MGP_C3HHeJ_T0018729.1 MGP_C3HHeJ_G0015617.1 mouse_genomes_project 1 11543333 11583744 - MGP_C3HHeJ_P0018729 Eya1 protein_coding protein_coding MGP_C3HHeJ_T0018730.1 MGP_C3HHeJ_G0015617.1 mouse_genomes_project 1 11575110 11583959 - Eya1 protein_coding retained_intron MGP_C3HHeJ_T0021457.1 MGP_C3HHeJ_G0016161.1 mouse_genomes_project 1 120621173 120631791 + Tfcp2l1 protein_coding processed_transcript MGP_C3HHeJ_T0021458.1 MGP_C3HHeJ_G0016161.1 mouse_genomes_project 1 120621174 120680190 + MGP_C3HHeJ_P0021458 Tfcp2l1 protein_coding protein_coding MGP_C3HHeJ_T0016779.1 MGP_C3HHeJ_G0014863.1 mouse_genomes_project 1 83224807 83257162 - C430014B12Rik processed_transcript antisense MGP_C3HHeJ_T0016780.1 MGP_C3HHeJ_G0014863.1 mouse_genomes_project 1 83251894 83257214 - C430014B12Rik processed_transcript antisense MGP_C3HHeJ_T0016781.1 MGP_C3HHeJ_G0014863.1 mouse_genomes_project 1 83253754 83257192 - C430014B12Rik processed_transcript retained_intron MGP_C3HHeJ_T0002678.1 MGP_C3HHeJ_G0002560.1 mouse_genomes_project 1 507053 554359 + Gm1992 antisense antisense MGP_C3HHeJ_T0011840.1 MGP_C3HHeJ_G0009944.1 mouse_genomes_project 1 25120464 25120881 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009443.1 MGP_C3HHeJ_G0007576.1 mouse_genomes_project 1 134631531 134631628 + Mir135b miRNA miRNA MGP_C3HHeJ_T0000376.1 MGP_C3HHeJ_G0000324.1 mouse_genomes_project 1 22976729 22980104 - TEC TEC MGP_C3HHeJ_T0018770.1 MGP_C3HHeJ_G0015627.1 mouse_genomes_project 1 13921958 14015892 - MGP_C3HHeJ_P0018770 Ube2w protein_coding protein_coding MGP_C3HHeJ_T0018771.1 MGP_C3HHeJ_G0015627.1 mouse_genomes_project 1 13952314 13973092 - Ube2w protein_coding processed_transcript MGP_C3HHeJ_T0018772.1 MGP_C3HHeJ_G0015627.1 mouse_genomes_project 1 13957501 14016069 - MGP_C3HHeJ_P0018772 Ube2w protein_coding protein_coding MGP_C3HHeJ_T0018773.1 MGP_C3HHeJ_G0015627.1 mouse_genomes_project 1 13969629 14015839 - MGP_C3HHeJ_P0018773 Ube2w protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018774.1 MGP_C3HHeJ_G0015627.1 mouse_genomes_project 1 13971851 14015864 - Ube2w protein_coding retained_intron MGP_C3HHeJ_T0018775.1 MGP_C3HHeJ_G0015627.1 mouse_genomes_project 1 13990960 14015864 - Ube2w protein_coding retained_intron MGP_C3HHeJ_T0000429.1 MGP_C3HHeJ_G0000376.1 mouse_genomes_project 1 41253610 41254286 + TEC TEC MGP_C3HHeJ_T0000396.1 MGP_C3HHeJ_G0000344.1 mouse_genomes_project 1 28838517 28841538 - TEC TEC MGP_C3HHeJ_T0023776.1 MGP_C3HHeJ_G0016663.1 mouse_genomes_project 1 188399285 188401217 + Aida protein_coding retained_intron MGP_C3HHeJ_T0023777.1 MGP_C3HHeJ_G0016663.1 mouse_genomes_project 1 188399744 188431428 + MGP_C3HHeJ_P0023777 Aida protein_coding protein_coding MGP_C3HHeJ_T0023778.1 MGP_C3HHeJ_G0016663.1 mouse_genomes_project 1 188400022 188406607 + Aida protein_coding processed_transcript MGP_C3HHeJ_T0023779.1 MGP_C3HHeJ_G0016663.1 mouse_genomes_project 1 188400100 188428740 + MGP_C3HHeJ_P0023779 Aida protein_coding protein_coding MGP_C3HHeJ_T0023780.1 MGP_C3HHeJ_G0016663.1 mouse_genomes_project 1 188400265 188420713 + MGP_C3HHeJ_P0023780 Aida protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023781.1 MGP_C3HHeJ_G0016663.1 mouse_genomes_project 1 188406524 188426475 + Aida protein_coding retained_intron MGP_C3HHeJ_T0023782.1 MGP_C3HHeJ_G0016663.1 mouse_genomes_project 1 188408183 188428739 + Aida protein_coding retained_intron MGP_C3HHeJ_T0023783.1 MGP_C3HHeJ_G0016663.1 mouse_genomes_project 1 188408323 188421007 + Aida protein_coding retained_intron MGP_C3HHeJ_T0005763.1 MGP_C3HHeJ_G0004826.1 mouse_genomes_project 1 92553278 92555029 + Gm28382 lincRNA lincRNA MGP_C3HHeJ_T0022072.1 MGP_C3HHeJ_G0016296.1 mouse_genomes_project 1 138364273 138367299 + MGP_C3HHeJ_P0022072 Phlda3 protein_coding protein_coding MGP_C3HHeJ_T0022073.1 MGP_C3HHeJ_G0016296.1 mouse_genomes_project 1 138365288 138367085 + Phlda3 protein_coding processed_transcript MGP_C3HHeJ_T0000537.1 MGP_C3HHeJ_G0000484.1 mouse_genomes_project 1 93070018 93075583 + TEC TEC MGP_C3HHeJ_T0000423.1 MGP_C3HHeJ_G0000370.1 mouse_genomes_project 1 37389620 37391258 + TEC TEC MGP_C3HHeJ_T0005752.1 MGP_C3HHeJ_G0004815.1 mouse_genomes_project 1 90007664 90013762 + 1700067G17Rik lincRNA lincRNA MGP_C3HHeJ_T0000506.1 MGP_C3HHeJ_G0000453.1 mouse_genomes_project 1 82876575 82879408 + TEC TEC MGP_C3HHeJ_T0101551.1 MGP_C3HHeJ_G0039517.1 mouse_genomes_project 1 58735258 58746071 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0019193.1 MGP_C3HHeJ_G0015713.1 mouse_genomes_project 1 36230258 36233864 + MGP_C3HHeJ_P0019193 Lipt1 protein_coding protein_coding MGP_C3HHeJ_T0019194.1 MGP_C3HHeJ_G0015713.1 mouse_genomes_project 1 36230726 36234749 + MGP_C3HHeJ_P0019194 Lipt1 protein_coding protein_coding MGP_C3HHeJ_T0019195.1 MGP_C3HHeJ_G0015713.1 mouse_genomes_project 1 36230894 36233981 + MGP_C3HHeJ_P0019195 Lipt1 protein_coding protein_coding MGP_C3HHeJ_T0019196.1 MGP_C3HHeJ_G0015713.1 mouse_genomes_project 1 36231082 36234075 + MGP_C3HHeJ_P0019196 Lipt1 protein_coding protein_coding MGP_C3HHeJ_T0020733.1 MGP_C3HHeJ_G0016000.1 mouse_genomes_project 1 86391728 86413060 - A630001G21Rik protein_coding processed_transcript MGP_C3HHeJ_T0020734.1 MGP_C3HHeJ_G0016000.1 mouse_genomes_project 1 86391728 86457795 - MGP_C3HHeJ_P0020734 A630001G21Rik protein_coding protein_coding MGP_C3HHeJ_T0020735.1 MGP_C3HHeJ_G0016000.1 mouse_genomes_project 1 86392334 86413108 - MGP_C3HHeJ_P0020735 A630001G21Rik protein_coding protein_coding MGP_C3HHeJ_T0020736.1 MGP_C3HHeJ_G0016000.1 mouse_genomes_project 1 86392337 86413060 - MGP_C3HHeJ_P0020736 A630001G21Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020737.1 MGP_C3HHeJ_G0016000.1 mouse_genomes_project 1 86392735 86413033 - A630001G21Rik protein_coding processed_transcript MGP_C3HHeJ_T0020738.1 MGP_C3HHeJ_G0016000.1 mouse_genomes_project 1 86401259 86413040 - A630001G21Rik protein_coding processed_transcript MGP_C3HHeJ_T0099859.1 MGP_C3HHeJ_G0038053.1 mouse_genomes_project 1 67251546 67251675 + Gm26342 snoRNA snoRNA MGP_C3HHeJ_T0019367.1 MGP_C3HHeJ_G0015753.1 mouse_genomes_project 1 42403660 42483855 - MGP_C3HHeJ_P0019367 Uxs1 protein_coding protein_coding MGP_C3HHeJ_T0019368.1 MGP_C3HHeJ_G0015753.1 mouse_genomes_project 1 42406205 42483796 - MGP_C3HHeJ_P0019368 Uxs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019369.1 MGP_C3HHeJ_G0015753.1 mouse_genomes_project 1 42421714 42483855 - MGP_C3HHeJ_P0019369 Uxs1 protein_coding protein_coding MGP_C3HHeJ_T0019370.1 MGP_C3HHeJ_G0015753.1 mouse_genomes_project 1 42428442 42483076 - Uxs1 protein_coding processed_transcript MGP_C3HHeJ_T0019371.1 MGP_C3HHeJ_G0015753.1 mouse_genomes_project 1 42428442 42483805 - MGP_C3HHeJ_P0019371 Uxs1 protein_coding protein_coding MGP_C3HHeJ_T0019372.1 MGP_C3HHeJ_G0015753.1 mouse_genomes_project 1 42431578 42483817 - Uxs1 protein_coding processed_transcript MGP_C3HHeJ_T0019373.1 MGP_C3HHeJ_G0015753.1 mouse_genomes_project 1 42435728 42483817 - MGP_C3HHeJ_P0019373 Uxs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019374.1 MGP_C3HHeJ_G0015753.1 mouse_genomes_project 1 42446741 42483829 - MGP_C3HHeJ_P0019374 Uxs1 protein_coding protein_coding MGP_C3HHeJ_T0009442.1 MGP_C3HHeJ_G0007575.1 mouse_genomes_project 1 133896691 133896855 - Gm24273 miRNA miRNA MGP_C3HHeJ_T0012261.1 MGP_C3HHeJ_G0010365.1 mouse_genomes_project 1 194348853 194350752 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016819.1 MGP_C3HHeJ_G0014875.1 mouse_genomes_project 1 141700023 141704190 + Gm37423 processed_transcript retained_intron MGP_C3HHeJ_T0011157.1 MGP_C3HHeJ_G0009290.1 mouse_genomes_project 1 86464703 86464967 + Gm22906 misc_RNA misc_RNA MGP_C3HHeJ_T0021655.1 MGP_C3HHeJ_G0016202.1 mouse_genomes_project 1 132803121 132837226 - MGP_C3HHeJ_P0021655 protein_coding protein_coding MGP_C3HHeJ_T0012018.1 MGP_C3HHeJ_G0010122.1 mouse_genomes_project 1 80832032 80834114 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011810.1 MGP_C3HHeJ_G0009914.1 mouse_genomes_project 1 14800744 14801215 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021589.1 MGP_C3HHeJ_G0016191.1 mouse_genomes_project 1 130009084 130028522 + Ccnt2 protein_coding retained_intron MGP_C3HHeJ_T0021590.1 MGP_C3HHeJ_G0016191.1 mouse_genomes_project 1 130009084 130030733 + Ccnt2 protein_coding retained_intron MGP_C3HHeJ_T0021591.1 MGP_C3HHeJ_G0016191.1 mouse_genomes_project 1 130009084 130030733 + Ccnt2 protein_coding retained_intron MGP_C3HHeJ_T0021592.1 MGP_C3HHeJ_G0016191.1 mouse_genomes_project 1 130009084 130033335 + Ccnt2 protein_coding retained_intron MGP_C3HHeJ_T0021593.1 MGP_C3HHeJ_G0016191.1 mouse_genomes_project 1 130009084 130043029 + MGP_C3HHeJ_P0021593 Ccnt2 protein_coding protein_coding MGP_C3HHeJ_T0021594.1 MGP_C3HHeJ_G0016191.1 mouse_genomes_project 1 130009084 130040900 + MGP_C3HHeJ_P0021594 Ccnt2 protein_coding protein_coding MGP_C3HHeJ_T0021595.1 MGP_C3HHeJ_G0016191.1 mouse_genomes_project 1 130031502 130043029 + Ccnt2 protein_coding processed_transcript MGP_C3HHeJ_T0098643.1 MGP_C3HHeJ_G0036837.1 mouse_genomes_project 1 120676847 120676977 + Gm23497 snRNA snRNA MGP_C3HHeJ_T0011776.1 MGP_C3HHeJ_G0009880.1 mouse_genomes_project 1 4822948 4823820 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024099.1 MGP_C3HHeJ_G0016725.1 mouse_genomes_project 1 198777163 198801105 - MGP_C3HHeJ_P0024099 Camk1g protein_coding protein_coding MGP_C3HHeJ_T0024100.1 MGP_C3HHeJ_G0016725.1 mouse_genomes_project 1 198777163 198801032 - MGP_C3HHeJ_P0024100 Camk1g protein_coding protein_coding MGP_C3HHeJ_T0024101.1 MGP_C3HHeJ_G0016725.1 mouse_genomes_project 1 198779574 198790584 - MGP_C3HHeJ_P0024101 Camk1g protein_coding protein_coding MGP_C3HHeJ_T0024102.1 MGP_C3HHeJ_G0016725.1 mouse_genomes_project 1 198785605 198801052 - Camk1g protein_coding retained_intron MGP_C3HHeJ_T0022822.1 MGP_C3HHeJ_G0016431.1 mouse_genomes_project 1 166424089 166457776 - MGP_C3HHeJ_P0022822 Fmo1 protein_coding protein_coding MGP_C3HHeJ_T0022823.1 MGP_C3HHeJ_G0016431.1 mouse_genomes_project 1 166424295 166425002 - Fmo1 protein_coding processed_transcript MGP_C3HHeJ_T0022824.1 MGP_C3HHeJ_G0016431.1 mouse_genomes_project 1 166424578 166429200 - Fmo1 protein_coding processed_transcript MGP_C3HHeJ_T0022825.1 MGP_C3HHeJ_G0016431.1 mouse_genomes_project 1 166426095 166429200 - Fmo1 protein_coding retained_intron MGP_C3HHeJ_T0022826.1 MGP_C3HHeJ_G0016431.1 mouse_genomes_project 1 166428332 166451088 - MGP_C3HHeJ_P0022826 Fmo1 protein_coding protein_coding MGP_C3HHeJ_T0022827.1 MGP_C3HHeJ_G0016431.1 mouse_genomes_project 1 166430797 166450946 - MGP_C3HHeJ_P0022827 Fmo1 protein_coding protein_coding MGP_C3HHeJ_T0022828.1 MGP_C3HHeJ_G0016431.1 mouse_genomes_project 1 166430823 166450840 - MGP_C3HHeJ_P0022828 Fmo1 protein_coding protein_coding MGP_C3HHeJ_T0000736.1 MGP_C3HHeJ_G0000680.1 mouse_genomes_project 1 185344324 185347395 + TEC TEC MGP_C3HHeJ_T0099867.1 MGP_C3HHeJ_G0038061.1 mouse_genomes_project 1 96283303 96283413 - Gm23181 snoRNA snoRNA MGP_C3HHeJ_T0005578.1 MGP_C3HHeJ_G0004685.1 mouse_genomes_project 1 10292333 10303471 + Gm29283 lincRNA lincRNA MGP_C3HHeJ_T0012243.1 MGP_C3HHeJ_G0010347.1 mouse_genomes_project 1 184471006 184471525 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000627.1 MGP_C3HHeJ_G0000572.1 mouse_genomes_project 1 141278206 141280610 - TEC TEC MGP_C3HHeJ_T0009407.1 MGP_C3HHeJ_G0007540.1 mouse_genomes_project 1 63058087 63059396 + miRNA miRNA MGP_C3HHeJ_T0101096.1 MGP_C3HHeJ_G0039281.1 mouse_genomes_project 1 176773546 176790387 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101097.1 MGP_C3HHeJ_G0039281.1 mouse_genomes_project 1 176789451 176790305 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0020977.1 MGP_C3HHeJ_G0016057.1 mouse_genomes_project 1 90943367 90946575 - MGP_C3HHeJ_P0020977 Gbx2 protein_coding protein_coding MGP_C3HHeJ_T0020978.1 MGP_C3HHeJ_G0016057.1 mouse_genomes_project 1 90943377 90944597 - Gbx2 protein_coding retained_intron MGP_C3HHeJ_T0000689.1 MGP_C3HHeJ_G0000634.1 mouse_genomes_project 1 164464350 164467919 + TEC TEC MGP_C3HHeJ_T0000630.1 MGP_C3HHeJ_G0000575.1 mouse_genomes_project 1 141762300 141765093 + TEC TEC MGP_C3HHeJ_T0020235.1 MGP_C3HHeJ_G0015915.1 mouse_genomes_project 1 74593481 74596010 + MGP_C3HHeJ_P0020235 Pnkd protein_coding protein_coding MGP_C3HHeJ_T0020236.1 MGP_C3HHeJ_G0015915.1 mouse_genomes_project 1 74593596 74666651 + MGP_C3HHeJ_P0020236 Pnkd protein_coding protein_coding MGP_C3HHeJ_T0020237.1 MGP_C3HHeJ_G0015915.1 mouse_genomes_project 1 74593601 74595190 + Pnkd protein_coding retained_intron MGP_C3HHeJ_T0020238.1 MGP_C3HHeJ_G0015915.1 mouse_genomes_project 1 74593605 74660522 + Pnkd protein_coding retained_intron MGP_C3HHeJ_T0020239.1 MGP_C3HHeJ_G0015915.1 mouse_genomes_project 1 74593606 74666661 + MGP_C3HHeJ_P0020239 Pnkd protein_coding protein_coding MGP_C3HHeJ_T0020240.1 MGP_C3HHeJ_G0015915.1 mouse_genomes_project 1 74594328 74595829 + Pnkd protein_coding retained_intron MGP_C3HHeJ_T0020248.1 MGP_C3HHeJ_G0015915.1 mouse_genomes_project 1 74645673 74666653 + MGP_C3HHeJ_P0020248 Pnkd protein_coding protein_coding MGP_C3HHeJ_T0020249.1 MGP_C3HHeJ_G0015915.1 mouse_genomes_project 1 74645726 74649324 + Pnkd protein_coding retained_intron MGP_C3HHeJ_T0005825.1 MGP_C3HHeJ_G0004875.1 mouse_genomes_project 1 132794199 132802830 - Gm15675 lincRNA lincRNA MGP_C3HHeJ_T0021608.1 MGP_C3HHeJ_G0016194.1 mouse_genomes_project 1 130192267 130341207 - MGP_C3HHeJ_P0021608 Zranb3 protein_coding protein_coding MGP_C3HHeJ_T0021609.1 MGP_C3HHeJ_G0016194.1 mouse_genomes_project 1 130192753 130341746 - MGP_C3HHeJ_P0021609 Zranb3 protein_coding protein_coding MGP_C3HHeJ_T0021610.1 MGP_C3HHeJ_G0016194.1 mouse_genomes_project 1 130203226 130210983 - Zranb3 protein_coding processed_transcript MGP_C3HHeJ_T0021611.1 MGP_C3HHeJ_G0016194.1 mouse_genomes_project 1 130225289 130341792 - Zranb3 protein_coding processed_transcript MGP_C3HHeJ_T0021612.1 MGP_C3HHeJ_G0016194.1 mouse_genomes_project 1 130234603 130341208 - Zranb3 protein_coding retained_intron MGP_C3HHeJ_T0021613.1 MGP_C3HHeJ_G0016194.1 mouse_genomes_project 1 130234991 130256735 - Zranb3 protein_coding processed_transcript MGP_C3HHeJ_T0021614.1 MGP_C3HHeJ_G0016194.1 mouse_genomes_project 1 130296574 130341199 - Zranb3 protein_coding retained_intron MGP_C3HHeJ_T0101331.1 MGP_C3HHeJ_G0039412.1 mouse_genomes_project 1 52582255 52589341 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101332.1 MGP_C3HHeJ_G0039412.1 mouse_genomes_project 1 52582281 52599171 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0002904.1 MGP_C3HHeJ_G0002729.1 mouse_genomes_project 1 185965148 185971204 - 2210411M09Rik antisense antisense MGP_C3HHeJ_T0098259.1 MGP_C3HHeJ_G0036471.1 mouse_genomes_project 1 88601691 88601963 + Gm25395 scaRNA scaRNA MGP_C3HHeJ_T0000509.1 MGP_C3HHeJ_G0000456.1 mouse_genomes_project 1 83898906 83900195 - TEC TEC MGP_C3HHeJ_T0022083.1 MGP_C3HHeJ_G0016298.1 mouse_genomes_project 1 138418066 138432558 + MGP_C3HHeJ_P0022083 Lad1 protein_coding protein_coding MGP_C3HHeJ_T0022084.1 MGP_C3HHeJ_G0016298.1 mouse_genomes_project 1 138429210 138431923 + Lad1 protein_coding processed_transcript MGP_C3HHeJ_T0022085.1 MGP_C3HHeJ_G0016298.1 mouse_genomes_project 1 138429749 138431678 + Lad1 protein_coding processed_transcript MGP_C3HHeJ_T0011892.1 MGP_C3HHeJ_G0009996.1 mouse_genomes_project 1 41896023 41897035 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000485.1 MGP_C3HHeJ_G0000432.1 mouse_genomes_project 1 72061075 72064596 - TEC TEC MGP_C3HHeJ_T0022925.1 MGP_C3HHeJ_G0016459.1 mouse_genomes_project 1 169152053 169156068 + Mpc2 protein_coding retained_intron MGP_C3HHeJ_T0022926.1 MGP_C3HHeJ_G0016459.1 mouse_genomes_project 1 169152453 169173351 + MGP_C3HHeJ_P0022926 Mpc2 protein_coding protein_coding MGP_C3HHeJ_T0022927.1 MGP_C3HHeJ_G0016459.1 mouse_genomes_project 1 169152640 169169831 + Mpc2 protein_coding retained_intron MGP_C3HHeJ_T0022928.1 MGP_C3HHeJ_G0016459.1 mouse_genomes_project 1 169152781 169173245 + MGP_C3HHeJ_P0022928 Mpc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022929.1 MGP_C3HHeJ_G0016459.1 mouse_genomes_project 1 169170278 169173256 + Mpc2 protein_coding processed_transcript MGP_C3HHeJ_T0012169.1 MGP_C3HHeJ_G0010273.1 mouse_genomes_project 1 148262441 148262834 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101588.1 MGP_C3HHeJ_G0039554.1 mouse_genomes_project 1 162673177 162675122 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0019560.1 MGP_C3HHeJ_G0015786.1 mouse_genomes_project 1 52389785 52423785 - MGP_C3HHeJ_P0019560 1700019A02Rik protein_coding protein_coding MGP_C3HHeJ_T0019561.1 MGP_C3HHeJ_G0015786.1 mouse_genomes_project 1 52389808 52423757 - MGP_C3HHeJ_P0019561 1700019A02Rik protein_coding protein_coding MGP_C3HHeJ_T0021678.1 MGP_C3HHeJ_G0016209.1 mouse_genomes_project 1 133107546 133121412 + MGP_C3HHeJ_P0021678 AA986860 protein_coding protein_coding MGP_C3HHeJ_T0021679.1 MGP_C3HHeJ_G0016209.1 mouse_genomes_project 1 133107680 133119253 + AA986860 protein_coding processed_transcript MGP_C3HHeJ_T0021680.1 MGP_C3HHeJ_G0016209.1 mouse_genomes_project 1 133117061 133121411 + AA986860 protein_coding retained_intron MGP_C3HHeJ_T0022210.1 MGP_C3HHeJ_G0016322.1 mouse_genomes_project 1 142194292 142234911 + MGP_C3HHeJ_P0022210 Aspm protein_coding protein_coding MGP_C3HHeJ_T0022211.1 MGP_C3HHeJ_G0016322.1 mouse_genomes_project 1 142194293 142213843 + Aspm protein_coding retained_intron MGP_C3HHeJ_T0022212.1 MGP_C3HHeJ_G0016322.1 mouse_genomes_project 1 142194295 142234914 + MGP_C3HHeJ_P0022212 Aspm protein_coding protein_coding MGP_C3HHeJ_T0022213.1 MGP_C3HHeJ_G0016322.1 mouse_genomes_project 1 142194339 142196677 + Aspm protein_coding retained_intron MGP_C3HHeJ_T0022214.1 MGP_C3HHeJ_G0016322.1 mouse_genomes_project 1 142224347 142228216 + Aspm protein_coding processed_transcript MGP_C3HHeJ_T0018971.1 MGP_C3HHeJ_G0015677.1 mouse_genomes_project 1 32025250 32081040 - MGP_C3HHeJ_P0018971 Bend6 protein_coding protein_coding MGP_C3HHeJ_T0018972.1 MGP_C3HHeJ_G0015677.1 mouse_genomes_project 1 32025250 32080999 - MGP_C3HHeJ_P0018972 Bend6 protein_coding protein_coding MGP_C3HHeJ_T0018973.1 MGP_C3HHeJ_G0015677.1 mouse_genomes_project 1 32035891 32056930 - Bend6 protein_coding processed_transcript MGP_C3HHeJ_T0018974.1 MGP_C3HHeJ_G0015677.1 mouse_genomes_project 1 32036352 32057292 - Bend6 protein_coding retained_intron MGP_C3HHeJ_T0018975.1 MGP_C3HHeJ_G0015677.1 mouse_genomes_project 1 32047222 32056940 - Bend6 protein_coding processed_transcript MGP_C3HHeJ_T0023942.1 MGP_C3HHeJ_G0016695.1 mouse_genomes_project 1 196318592 196351302 - MGP_C3HHeJ_P0023942 Vash2 protein_coding protein_coding MGP_C3HHeJ_T0023943.1 MGP_C3HHeJ_G0016695.1 mouse_genomes_project 1 196318594 196351008 - MGP_C3HHeJ_P0023943 Vash2 protein_coding protein_coding MGP_C3HHeJ_T0023944.1 MGP_C3HHeJ_G0016695.1 mouse_genomes_project 1 196344907 196351220 - Vash2 protein_coding processed_transcript MGP_C3HHeJ_T0018801.1 MGP_C3HHeJ_G0015634.1 mouse_genomes_project 1 15142758 15185690 + MGP_C3HHeJ_P0018801 Crispld1 protein_coding protein_coding MGP_C3HHeJ_T0018802.1 MGP_C3HHeJ_G0015634.1 mouse_genomes_project 1 15142772 15161565 + MGP_C3HHeJ_P0018802 Crispld1 protein_coding protein_coding MGP_C3HHeJ_T0018803.1 MGP_C3HHeJ_G0015634.1 mouse_genomes_project 1 15142801 15186459 + MGP_C3HHeJ_P0018803 Crispld1 protein_coding protein_coding MGP_C3HHeJ_T0002769.1 MGP_C3HHeJ_G0002622.1 mouse_genomes_project 1 74587548 74588254 + Gm28364 antisense antisense MGP_C3HHeJ_T0016755.1 MGP_C3HHeJ_G0014851.1 mouse_genomes_project 1 34833828 34835794 + D430040D24Rik processed_transcript retained_intron MGP_C3HHeJ_T0016756.1 MGP_C3HHeJ_G0014851.1 mouse_genomes_project 1 34834486 34841753 + D430040D24Rik processed_transcript antisense MGP_C3HHeJ_T0005670.1 MGP_C3HHeJ_G0004752.1 mouse_genomes_project 1 59244014 59248140 - Gm26813 lincRNA lincRNA MGP_C3HHeJ_T0000529.1 MGP_C3HHeJ_G0000476.1 mouse_genomes_project 1 89627866 89629627 + TEC TEC MGP_C3HHeJ_T0011935.1 MGP_C3HHeJ_G0010039.1 mouse_genomes_project 1 51758105 51758568 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000358.1 MGP_C3HHeJ_G0000308.1 mouse_genomes_project 1 12086293 12090614 + TEC TEC MGP_C3HHeJ_T0098332.1 MGP_C3HHeJ_G0036543.1 mouse_genomes_project 1 163839658 163846099 - Gm37529 sense_intronic sense_intronic MGP_C3HHeJ_T0000393.1 MGP_C3HHeJ_G0000341.1 mouse_genomes_project 1 23513325 23514547 + TEC TEC MGP_C3HHeJ_T0012219.1 MGP_C3HHeJ_G0010323.1 mouse_genomes_project 1 169656516 169658425 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000402.1 MGP_C3HHeJ_G0000350.1 mouse_genomes_project 1 31767780 31770855 - TEC TEC MGP_C3HHeJ_T0020840.1 MGP_C3HHeJ_G0016027.1 mouse_genomes_project 1 88020359 88046958 + MGP_C3HHeJ_P0020840 Eif4e2 protein_coding protein_coding MGP_C3HHeJ_T0020841.1 MGP_C3HHeJ_G0016027.1 mouse_genomes_project 1 88020359 88041173 + MGP_C3HHeJ_P0020841 Eif4e2 protein_coding protein_coding MGP_C3HHeJ_T0020842.1 MGP_C3HHeJ_G0016027.1 mouse_genomes_project 1 88020359 88033075 + MGP_C3HHeJ_P0020842 Eif4e2 protein_coding protein_coding MGP_C3HHeJ_T0020843.1 MGP_C3HHeJ_G0016027.1 mouse_genomes_project 1 88020359 88046958 + MGP_C3HHeJ_P0020843 Eif4e2 protein_coding protein_coding MGP_C3HHeJ_T0020844.1 MGP_C3HHeJ_G0016027.1 mouse_genomes_project 1 88020359 88035324 + MGP_C3HHeJ_P0020844 Eif4e2 protein_coding protein_coding MGP_C3HHeJ_T0020845.1 MGP_C3HHeJ_G0016027.1 mouse_genomes_project 1 88020384 88033068 + MGP_C3HHeJ_P0020845 Eif4e2 protein_coding protein_coding MGP_C3HHeJ_T0020846.1 MGP_C3HHeJ_G0016027.1 mouse_genomes_project 1 88020424 88032341 + MGP_C3HHeJ_P0020846 Eif4e2 protein_coding protein_coding MGP_C3HHeJ_T0020847.1 MGP_C3HHeJ_G0016027.1 mouse_genomes_project 1 88020731 88034532 + MGP_C3HHeJ_P0020847 Eif4e2 protein_coding protein_coding MGP_C3HHeJ_T0005796.1 MGP_C3HHeJ_G0004853.1 mouse_genomes_project 1 115805553 115878252 - 9330185C12Rik lincRNA lincRNA MGP_C3HHeJ_T0020224.1 MGP_C3HHeJ_G0015912.1 mouse_genomes_project 1 74540135 74540944 + MGP_C3HHeJ_P0020224 Arpc2 protein_coding protein_coding MGP_C3HHeJ_T0020225.1 MGP_C3HHeJ_G0015912.1 mouse_genomes_project 1 74540552 74574629 + MGP_C3HHeJ_P0020225 Arpc2 protein_coding protein_coding MGP_C3HHeJ_T0020226.1 MGP_C3HHeJ_G0015912.1 mouse_genomes_project 1 74540572 74574411 + MGP_C3HHeJ_P0020226 Arpc2 protein_coding protein_coding MGP_C3HHeJ_T0020227.1 MGP_C3HHeJ_G0015912.1 mouse_genomes_project 1 74540605 74574412 + MGP_C3HHeJ_P0020227 Arpc2 protein_coding protein_coding MGP_C3HHeJ_T0023016.1 MGP_C3HHeJ_G0016476.1 mouse_genomes_project 1 170967830 171036053 - MGP_C3HHeJ_P0023016 Uck2 protein_coding protein_coding MGP_C3HHeJ_T0023017.1 MGP_C3HHeJ_G0016476.1 mouse_genomes_project 1 170970793 171035617 - MGP_C3HHeJ_P0023017 Uck2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023018.1 MGP_C3HHeJ_G0016476.1 mouse_genomes_project 1 170971179 170981792 - MGP_C3HHeJ_P0023018 Uck2 protein_coding protein_coding MGP_C3HHeJ_T0023019.1 MGP_C3HHeJ_G0016476.1 mouse_genomes_project 1 170971284 170989159 - MGP_C3HHeJ_P0023019 Uck2 protein_coding protein_coding MGP_C3HHeJ_T0023020.1 MGP_C3HHeJ_G0016476.1 mouse_genomes_project 1 170974845 171035334 - MGP_C3HHeJ_P0023020 Uck2 protein_coding protein_coding MGP_C3HHeJ_T0023021.1 MGP_C3HHeJ_G0016476.1 mouse_genomes_project 1 170979648 171035611 - MGP_C3HHeJ_P0023021 Uck2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023022.1 MGP_C3HHeJ_G0016476.1 mouse_genomes_project 1 170982438 171035440 - Uck2 protein_coding processed_transcript MGP_C3HHeJ_T0000728.1 MGP_C3HHeJ_G0000673.1 mouse_genomes_project 1 182297791 182299022 - TEC TEC MGP_C3HHeJ_T0019281.1 MGP_C3HHeJ_G0015733.1 mouse_genomes_project 1 38247421 38248597 - MGP_C3HHeJ_P0019281 Gm3646 protein_coding protein_coding MGP_C3HHeJ_T0009386.1 MGP_C3HHeJ_G0007519.1 mouse_genomes_project 1 27306992 27307088 - Gm23785 miRNA miRNA MGP_C3HHeJ_T0022700.1 MGP_C3HHeJ_G0016410.1 mouse_genomes_project 1 164455587 164524406 + MGP_C3HHeJ_P0022700 Rc3h1 protein_coding protein_coding MGP_C3HHeJ_T0022701.1 MGP_C3HHeJ_G0016410.1 mouse_genomes_project 1 164479431 164517236 + MGP_C3HHeJ_P0022701 Rc3h1 protein_coding protein_coding MGP_C3HHeJ_T0022702.1 MGP_C3HHeJ_G0016410.1 mouse_genomes_project 1 164500252 164501407 + Rc3h1 protein_coding retained_intron MGP_C3HHeJ_T0021132.1 MGP_C3HHeJ_G0016092.1 mouse_genomes_project 1 93990756 94020380 + MGP_C3HHeJ_P0021132 Gpc1 protein_coding protein_coding MGP_C3HHeJ_T0021133.1 MGP_C3HHeJ_G0016092.1 mouse_genomes_project 1 93991080 93994789 + Gpc1 protein_coding processed_transcript MGP_C3HHeJ_T0021134.1 MGP_C3HHeJ_G0016092.1 mouse_genomes_project 1 94012450 94015224 + Gpc1 protein_coding retained_intron MGP_C3HHeJ_T0021135.1 MGP_C3HHeJ_G0016092.1 mouse_genomes_project 1 94015817 94017126 + Gpc1 protein_coding retained_intron MGP_C3HHeJ_T0021136.1 MGP_C3HHeJ_G0016092.1 mouse_genomes_project 1 94016023 94017199 + Gpc1 protein_coding retained_intron MGP_C3HHeJ_T0011984.1 MGP_C3HHeJ_G0010088.1 mouse_genomes_project 1 64071859 64072324 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022591.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160153458 160283695 - MGP_C3HHeJ_P0022591 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022592.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160156038 160283692 - MGP_C3HHeJ_P0022592 Ralgps2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022593.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160156038 160283636 - MGP_C3HHeJ_P0022593 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022594.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160156981 160283480 - MGP_C3HHeJ_P0022594 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022595.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160157387 160283624 - MGP_C3HHeJ_P0022595 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022596.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160157393 160283701 - MGP_C3HHeJ_P0022596 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022597.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160158101 160163450 - Ralgps2 protein_coding retained_intron MGP_C3HHeJ_T0022598.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160162962 160283719 - MGP_C3HHeJ_P0022598 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022599.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160166386 160283660 - MGP_C3HHeJ_P0022599 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022600.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160168738 160283686 - MGP_C3HHeJ_P0022600 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022601.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160168757 160282911 - MGP_C3HHeJ_P0022601 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022602.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160178339 160180691 - Ralgps2 protein_coding retained_intron MGP_C3HHeJ_T0022603.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160178393 160182535 - Ralgps2 protein_coding retained_intron MGP_C3HHeJ_T0022606.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160231225 160283227 - MGP_C3HHeJ_P0022606 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022607.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160244818 160282874 - MGP_C3HHeJ_P0022607 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0011919.1 MGP_C3HHeJ_G0010023.1 mouse_genomes_project 1 47829791 47831328 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005724.1 MGP_C3HHeJ_G0004792.1 mouse_genomes_project 1 77865850 77867700 + Gm28386 lincRNA lincRNA MGP_C3HHeJ_T0005704.1 MGP_C3HHeJ_G0004779.1 mouse_genomes_project 1 72341150 72356074 - Gm4319 lincRNA lincRNA MGP_C3HHeJ_T0011859.1 MGP_C3HHeJ_G0009963.1 mouse_genomes_project 1 29607248 29609109 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024033.1 MGP_C3HHeJ_G0016715.1 mouse_genomes_project 1 197905882 198177573 - MGP_C3HHeJ_P0024033 Hhat protein_coding protein_coding MGP_C3HHeJ_T0024034.1 MGP_C3HHeJ_G0016715.1 mouse_genomes_project 1 197922003 198177583 - MGP_C3HHeJ_P0024034 Hhat protein_coding protein_coding MGP_C3HHeJ_T0024035.1 MGP_C3HHeJ_G0016715.1 mouse_genomes_project 1 197952254 198177578 - MGP_C3HHeJ_P0024035 Hhat protein_coding non_stop_decay MGP_C3HHeJ_T0024036.1 MGP_C3HHeJ_G0016715.1 mouse_genomes_project 1 198031156 198133350 - Hhat protein_coding processed_transcript MGP_C3HHeJ_T0024037.1 MGP_C3HHeJ_G0016715.1 mouse_genomes_project 1 198056134 198094908 - Hhat protein_coding processed_transcript MGP_C3HHeJ_T0024038.1 MGP_C3HHeJ_G0016715.1 mouse_genomes_project 1 198133338 198144732 - Hhat protein_coding processed_transcript MGP_C3HHeJ_T0024039.1 MGP_C3HHeJ_G0016715.1 mouse_genomes_project 1 198143862 198177352 - Hhat protein_coding processed_transcript MGP_C3HHeJ_T0022321.1 MGP_C3HHeJ_G0016344.1 mouse_genomes_project 1 153580421 153595875 - MGP_C3HHeJ_P0022321 Prg4 protein_coding protein_coding MGP_C3HHeJ_T0022322.1 MGP_C3HHeJ_G0016344.1 mouse_genomes_project 1 153580421 153595875 - MGP_C3HHeJ_P0022322 Prg4 protein_coding protein_coding MGP_C3HHeJ_T0022323.1 MGP_C3HHeJ_G0016344.1 mouse_genomes_project 1 153580421 153595875 - MGP_C3HHeJ_P0022323 Prg4 protein_coding protein_coding MGP_C3HHeJ_T0022324.1 MGP_C3HHeJ_G0016344.1 mouse_genomes_project 1 153580421 153595875 - MGP_C3HHeJ_P0022324 Prg4 protein_coding protein_coding MGP_C3HHeJ_T0022325.1 MGP_C3HHeJ_G0016344.1 mouse_genomes_project 1 153580825 153596442 - MGP_C3HHeJ_P0022325 Prg4 protein_coding protein_coding MGP_C3HHeJ_T0022326.1 MGP_C3HHeJ_G0016344.1 mouse_genomes_project 1 153580878 153596442 - MGP_C3HHeJ_P0022326 Prg4 protein_coding protein_coding MGP_C3HHeJ_T0022327.1 MGP_C3HHeJ_G0016344.1 mouse_genomes_project 1 153586289 153596442 - MGP_C3HHeJ_P0022327 Prg4 protein_coding protein_coding MGP_C3HHeJ_T0022328.1 MGP_C3HHeJ_G0016344.1 mouse_genomes_project 1 153588483 153596442 - MGP_C3HHeJ_P0022328 Prg4 protein_coding protein_coding MGP_C3HHeJ_T0022435.1 MGP_C3HHeJ_G0016365.1 mouse_genomes_project 1 156752681 156803226 - MGP_C3HHeJ_P0022435 Npl protein_coding protein_coding MGP_C3HHeJ_T0022436.1 MGP_C3HHeJ_G0016365.1 mouse_genomes_project 1 156801602 156802892 - Npl protein_coding retained_intron MGP_C3HHeJ_T0023079.1 MGP_C3HHeJ_G0016493.1 mouse_genomes_project 1 174129245 174137327 - MGP_C3HHeJ_P0023079 Gm7694 protein_coding protein_coding MGP_C3HHeJ_T0019505.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51404777 51476541 - MGP_C3HHeJ_P0019505 Gls protein_coding protein_coding MGP_C3HHeJ_T0019506.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51407270 51475614 - MGP_C3HHeJ_P0019506 Gls protein_coding protein_coding MGP_C3HHeJ_T0019507.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51407457 51433020 - MGP_C3HHeJ_P0019507 Gls protein_coding protein_coding MGP_C3HHeJ_T0019508.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51407593 51410305 - Gls protein_coding retained_intron MGP_C3HHeJ_T0019509.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51407611 51410475 - Gls protein_coding retained_intron MGP_C3HHeJ_T0019510.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51409776 51433021 - Gls protein_coding retained_intron MGP_C3HHeJ_T0019511.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51426299 51476550 - MGP_C3HHeJ_P0019511 Gls protein_coding protein_coding MGP_C3HHeJ_T0019512.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51427475 51444038 - Gls protein_coding retained_intron MGP_C3HHeJ_T0019513.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51427475 51455538 - MGP_C3HHeJ_P0019513 Gls protein_coding protein_coding MGP_C3HHeJ_T0019514.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51429878 51433020 - MGP_C3HHeJ_P0019514 Gls protein_coding protein_coding MGP_C3HHeJ_T0019515.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51431663 51440090 - Gls protein_coding retained_intron MGP_C3HHeJ_T0019516.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51433310 51458923 - Gls protein_coding processed_transcript MGP_C3HHeJ_T0019517.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51439193 51443930 - Gls protein_coding retained_intron MGP_C3HHeJ_T0019518.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51447725 51458923 - Gls protein_coding retained_intron MGP_C3HHeJ_T0019519.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51448736 51457862 - Gls protein_coding retained_intron MGP_C3HHeJ_T0019520.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51450856 51459272 - Gls protein_coding retained_intron MGP_C3HHeJ_T0019521.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51457846 51476129 - Gls protein_coding processed_transcript MGP_C3HHeJ_T0020386.1 MGP_C3HHeJ_G0015943.1 mouse_genomes_project 1 75453082 75461757 - MGP_C3HHeJ_P0020386 Abcb6 protein_coding protein_coding MGP_C3HHeJ_T0020387.1 MGP_C3HHeJ_G0015943.1 mouse_genomes_project 1 75453084 75461651 - Abcb6 protein_coding retained_intron MGP_C3HHeJ_T0020388.1 MGP_C3HHeJ_G0015943.1 mouse_genomes_project 1 75453123 75454235 - MGP_C3HHeJ_P0020388 Abcb6 protein_coding protein_coding MGP_C3HHeJ_T0020389.1 MGP_C3HHeJ_G0015943.1 mouse_genomes_project 1 75454085 75461651 - Abcb6 protein_coding retained_intron MGP_C3HHeJ_T0020390.1 MGP_C3HHeJ_G0015943.1 mouse_genomes_project 1 75456917 75460314 - Abcb6 protein_coding retained_intron MGP_C3HHeJ_T0020391.1 MGP_C3HHeJ_G0015943.1 mouse_genomes_project 1 75459274 75461741 - Abcb6 protein_coding retained_intron MGP_C3HHeJ_T0005604.1 MGP_C3HHeJ_G0004709.1 mouse_genomes_project 1 34047098 34050814 + Gm28415 lincRNA lincRNA MGP_C3HHeJ_T0011772.1 MGP_C3HHeJ_G0009876.1 mouse_genomes_project 1 4453211 4454223 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020267.1 MGP_C3HHeJ_G0015920.1 mouse_genomes_project 1 74724999 74755879 + MGP_C3HHeJ_P0020267 Vil1 protein_coding protein_coding MGP_C3HHeJ_T0020268.1 MGP_C3HHeJ_G0015920.1 mouse_genomes_project 1 74737523 74741488 + MGP_C3HHeJ_P0020268 Vil1 protein_coding protein_coding MGP_C3HHeJ_T0020269.1 MGP_C3HHeJ_G0015920.1 mouse_genomes_project 1 74739886 74741481 + Vil1 protein_coding retained_intron MGP_C3HHeJ_T0020270.1 MGP_C3HHeJ_G0015920.1 mouse_genomes_project 1 74742155 74744436 + Vil1 protein_coding retained_intron MGP_C3HHeJ_T0098238.1 MGP_C3HHeJ_G0036450.1 mouse_genomes_project 1 44507938 44508141 + Gm23984 ribozyme ribozyme MGP_C3HHeJ_T0019114.1 MGP_C3HHeJ_G0015701.1 mouse_genomes_project 1 34978739 34980937 + MGP_C3HHeJ_P0019114 Cox5b protein_coding protein_coding MGP_C3HHeJ_T0019115.1 MGP_C3HHeJ_G0015701.1 mouse_genomes_project 1 34978865 34980642 + MGP_C3HHeJ_P0019115 Cox5b protein_coding protein_coding MGP_C3HHeJ_T0019116.1 MGP_C3HHeJ_G0015701.1 mouse_genomes_project 1 34978883 34979806 + Cox5b protein_coding retained_intron MGP_C3HHeJ_T0019117.1 MGP_C3HHeJ_G0015701.1 mouse_genomes_project 1 34978897 34979763 + Cox5b protein_coding retained_intron MGP_C3HHeJ_T0019118.1 MGP_C3HHeJ_G0015701.1 mouse_genomes_project 1 34978899 34980641 + Cox5b protein_coding processed_transcript MGP_C3HHeJ_T0019119.1 MGP_C3HHeJ_G0015701.1 mouse_genomes_project 1 34978943 34980642 + MGP_C3HHeJ_P0019119 Cox5b protein_coding protein_coding MGP_C3HHeJ_T0098335.1 MGP_C3HHeJ_G0036546.1 mouse_genomes_project 1 169142971 169146046 - Gm37864 sense_intronic sense_intronic MGP_C3HHeJ_T0012009.1 MGP_C3HHeJ_G0010113.1 mouse_genomes_project 1 75837080 75837428 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011942.1 MGP_C3HHeJ_G0010046.1 mouse_genomes_project 1 54610214 54610930 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011858.1 MGP_C3HHeJ_G0009962.1 mouse_genomes_project 1 29328893 29329533 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012123.1 MGP_C3HHeJ_G0010227.1 mouse_genomes_project 1 124286696 124287531 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000490.1 MGP_C3HHeJ_G0000437.1 mouse_genomes_project 1 75297314 75326355 + TEC TEC MGP_C3HHeJ_T0021960.1 MGP_C3HHeJ_G0016273.1 mouse_genomes_project 1 136872580 136889137 - MGP_C3HHeJ_P0021960 Tmem183a protein_coding protein_coding MGP_C3HHeJ_T0021961.1 MGP_C3HHeJ_G0016273.1 mouse_genomes_project 1 136874165 136889099 - MGP_C3HHeJ_P0021961 Tmem183a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021962.1 MGP_C3HHeJ_G0016273.1 mouse_genomes_project 1 136874393 136877442 - Tmem183a protein_coding retained_intron MGP_C3HHeJ_T0021963.1 MGP_C3HHeJ_G0016273.1 mouse_genomes_project 1 136882596 136889111 - Tmem183a protein_coding retained_intron MGP_C3HHeJ_T0021964.1 MGP_C3HHeJ_G0016273.1 mouse_genomes_project 1 136882862 136888848 - MGP_C3HHeJ_P0021964 Tmem183a protein_coding protein_coding MGP_C3HHeJ_T0023631.1 MGP_C3HHeJ_G0016631.1 mouse_genomes_project 1 185403437 185455644 - MGP_C3HHeJ_P0023631 Stum protein_coding protein_coding MGP_C3HHeJ_T0023632.1 MGP_C3HHeJ_G0016631.1 mouse_genomes_project 1 185409663 185455681 - MGP_C3HHeJ_P0023632 Stum protein_coding protein_coding MGP_C3HHeJ_T0018823.1 MGP_C3HHeJ_G0015642.1 mouse_genomes_project 1 18240185 18247310 - MGP_C3HHeJ_P0018823 Il17f protein_coding protein_coding MGP_C3HHeJ_T0018824.1 MGP_C3HHeJ_G0015642.1 mouse_genomes_project 1 18240718 18242593 - Il17f protein_coding retained_intron MGP_C3HHeJ_T0018825.1 MGP_C3HHeJ_G0015642.1 mouse_genomes_project 1 18240770 18254608 - MGP_C3HHeJ_P0018825 Il17f protein_coding protein_coding MGP_C3HHeJ_T0018826.1 MGP_C3HHeJ_G0015642.1 mouse_genomes_project 1 18250515 18254608 - Il17f protein_coding processed_transcript MGP_C3HHeJ_T0002777.1 MGP_C3HHeJ_G0002629.1 mouse_genomes_project 1 78715242 78729713 - Gm28410 antisense antisense MGP_C3HHeJ_T0019017.1 MGP_C3HHeJ_G0015684.1 mouse_genomes_project 1 32801662 32812834 + MGP_C3HHeJ_P0019017 Amer3 protein_coding protein_coding MGP_C3HHeJ_T0002870.1 MGP_C3HHeJ_G0002701.1 mouse_genomes_project 1 166884836 166891537 + Gm20471 antisense antisense MGP_C3HHeJ_T0021116.1 MGP_C3HHeJ_G0016084.1 mouse_genomes_project 1 93650195 93659785 - MGP_C3HHeJ_P0021116 protein_coding protein_coding MGP_C3HHeJ_T0021117.1 MGP_C3HHeJ_G0016084.1 mouse_genomes_project 1 93650570 93659785 - MGP_C3HHeJ_P0021117 protein_coding protein_coding MGP_C3HHeJ_T0021118.1 MGP_C3HHeJ_G0016084.1 mouse_genomes_project 1 93650570 93659689 - MGP_C3HHeJ_P0021118 protein_coding protein_coding MGP_C3HHeJ_T0098308.1 MGP_C3HHeJ_G0036520.1 mouse_genomes_project 1 701418 713841 - Gm19938 sense_intronic sense_intronic MGP_C3HHeJ_T0021546.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127572575 127621721 - MGP_C3HHeJ_P0021546 protein_coding unknown_likely_coding MGP_C3HHeJ_T0021547.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127573162 127621874 - MGP_C3HHeJ_P0021547 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021548.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127580072 127581898 - protein_coding retained_intron MGP_C3HHeJ_T0021549.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127590507 127593585 - protein_coding retained_intron MGP_C3HHeJ_T0021550.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127590526 127622120 - MGP_C3HHeJ_P0021550 protein_coding protein_coding MGP_C3HHeJ_T0021551.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127590556 127620994 - MGP_C3HHeJ_P0021551 protein_coding protein_coding MGP_C3HHeJ_T0021552.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127591935 127621847 - MGP_C3HHeJ_P0021552 protein_coding protein_coding MGP_C3HHeJ_T0021553.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127591992 127622100 - MGP_C3HHeJ_P0021553 protein_coding protein_coding MGP_C3HHeJ_T0021554.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127592001 127621863 - MGP_C3HHeJ_P0021554 protein_coding protein_coding MGP_C3HHeJ_T0021555.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127600715 127621821 - protein_coding retained_intron MGP_C3HHeJ_T0000447.1 MGP_C3HHeJ_G0000394.1 mouse_genomes_project 1 55489574 55489927 - TEC TEC MGP_C3HHeJ_T0005588.1 MGP_C3HHeJ_G0004695.1 mouse_genomes_project 1 20880134 20880533 + Gm27028 lincRNA lincRNA MGP_C3HHeJ_T0023700.1 MGP_C3HHeJ_G0016648.1 mouse_genomes_project 1 186563321 186565140 - MGP_C3HHeJ_P0023700 Ccdc121 protein_coding protein_coding MGP_C3HHeJ_T0016827.1 MGP_C3HHeJ_G0014879.1 mouse_genomes_project 1 163090407 163162659 + Gm10530 processed_transcript sense_intronic MGP_C3HHeJ_T0016828.1 MGP_C3HHeJ_G0014879.1 mouse_genomes_project 1 163159444 163162659 + Gm10530 processed_transcript lincRNA MGP_C3HHeJ_T0012075.1 MGP_C3HHeJ_G0010179.1 mouse_genomes_project 1 106935169 106935495 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021386.1 MGP_C3HHeJ_G0016147.1 mouse_genomes_project 1 109118143 109131140 + MGP_C3HHeJ_P0021386 Serpinb11 protein_coding protein_coding MGP_C3HHeJ_T0021387.1 MGP_C3HHeJ_G0016147.1 mouse_genomes_project 1 109118874 109137447 + MGP_C3HHeJ_P0021387 Serpinb11 protein_coding protein_coding MGP_C3HHeJ_T0019646.1 MGP_C3HHeJ_G0015803.1 mouse_genomes_project 1 54668286 54727461 - MGP_C3HHeJ_P0019646 Rftn2 protein_coding protein_coding MGP_C3HHeJ_T0019647.1 MGP_C3HHeJ_G0015803.1 mouse_genomes_project 1 54669875 54727461 - MGP_C3HHeJ_P0019647 Rftn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019648.1 MGP_C3HHeJ_G0015803.1 mouse_genomes_project 1 54701193 54727461 - MGP_C3HHeJ_P0019648 Rftn2 protein_coding protein_coding MGP_C3HHeJ_T0019649.1 MGP_C3HHeJ_G0015803.1 mouse_genomes_project 1 54703487 54705843 - Rftn2 protein_coding processed_transcript MGP_C3HHeJ_T0019650.1 MGP_C3HHeJ_G0015803.1 mouse_genomes_project 1 54724620 54727461 - Rftn2 protein_coding processed_transcript MGP_C3HHeJ_T0099852.1 MGP_C3HHeJ_G0038046.1 mouse_genomes_project 1 59468630 59468714 + Snord11 snoRNA snoRNA MGP_C3HHeJ_T0000442.1 MGP_C3HHeJ_G0000389.1 mouse_genomes_project 1 54208259 54209669 - TEC TEC MGP_C3HHeJ_T0021787.1 MGP_C3HHeJ_G0016235.1 mouse_genomes_project 1 134541429 134570123 - MGP_C3HHeJ_P0021787 Cdk18 protein_coding protein_coding MGP_C3HHeJ_T0021788.1 MGP_C3HHeJ_G0016235.1 mouse_genomes_project 1 134544614 134546942 - Cdk18 protein_coding retained_intron MGP_C3HHeJ_T0021789.1 MGP_C3HHeJ_G0016235.1 mouse_genomes_project 1 134544792 134570044 - MGP_C3HHeJ_P0021789 Cdk18 protein_coding protein_coding MGP_C3HHeJ_T0021790.1 MGP_C3HHeJ_G0016235.1 mouse_genomes_project 1 134544859 134546719 - MGP_C3HHeJ_P0021790 Cdk18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021791.1 MGP_C3HHeJ_G0016235.1 mouse_genomes_project 1 134544962 134546284 - Cdk18 protein_coding retained_intron MGP_C3HHeJ_T0011166.1 MGP_C3HHeJ_G0009299.1 mouse_genomes_project 1 189996382 189996657 - Gm23780 misc_RNA misc_RNA MGP_C3HHeJ_T0021538.1 MGP_C3HHeJ_G0016181.1 mouse_genomes_project 1 123615967 123632613 - MGP_C3HHeJ_P0021538 Ddx18 protein_coding protein_coding MGP_C3HHeJ_T0021539.1 MGP_C3HHeJ_G0016181.1 mouse_genomes_project 1 123617274 123623827 - Ddx18 protein_coding retained_intron MGP_C3HHeJ_T0021540.1 MGP_C3HHeJ_G0016181.1 mouse_genomes_project 1 123622016 123624893 - MGP_C3HHeJ_P0021540 Ddx18 protein_coding protein_coding MGP_C3HHeJ_T0021541.1 MGP_C3HHeJ_G0016181.1 mouse_genomes_project 1 123629216 123632346 - Ddx18 protein_coding processed_transcript MGP_C3HHeJ_T0000699.1 MGP_C3HHeJ_G0000644.1 mouse_genomes_project 1 168530132 168533653 - TEC TEC MGP_C3HHeJ_T0002848.1 MGP_C3HHeJ_G0002683.1 mouse_genomes_project 1 155060170 155071697 + Gm28610 antisense antisense MGP_C3HHeJ_T0019959.1 MGP_C3HHeJ_G0015856.1 mouse_genomes_project 1 63036198 63039860 + MGP_C3HHeJ_P0019959 Eef1b2 protein_coding protein_coding MGP_C3HHeJ_T0019960.1 MGP_C3HHeJ_G0015856.1 mouse_genomes_project 1 63036502 63038736 + MGP_C3HHeJ_P0019960 Eef1b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019961.1 MGP_C3HHeJ_G0015856.1 mouse_genomes_project 1 63036503 63039030 + MGP_C3HHeJ_P0019961 Eef1b2 protein_coding protein_coding MGP_C3HHeJ_T0019962.1 MGP_C3HHeJ_G0015856.1 mouse_genomes_project 1 63036504 63037883 + Eef1b2 protein_coding processed_transcript MGP_C3HHeJ_T0019963.1 MGP_C3HHeJ_G0015856.1 mouse_genomes_project 1 63036518 63038942 + MGP_C3HHeJ_P0019963 Eef1b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019964.1 MGP_C3HHeJ_G0015856.1 mouse_genomes_project 1 63036518 63038996 + MGP_C3HHeJ_P0019964 Eef1b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019965.1 MGP_C3HHeJ_G0015856.1 mouse_genomes_project 1 63036520 63037797 + Eef1b2 protein_coding processed_transcript MGP_C3HHeJ_T0019966.1 MGP_C3HHeJ_G0015856.1 mouse_genomes_project 1 63036558 63038253 + MGP_C3HHeJ_P0019966 Eef1b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019967.1 MGP_C3HHeJ_G0015856.1 mouse_genomes_project 1 63036596 63038272 + MGP_C3HHeJ_P0019967 Eef1b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0101574.1 MGP_C3HHeJ_G0039540.1 mouse_genomes_project 1 104929303 104981927 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099911.1 MGP_C3HHeJ_G0038105.1 mouse_genomes_project 1 169258556 169258683 - Gm23208 snoRNA snoRNA MGP_C3HHeJ_T0005874.1 MGP_C3HHeJ_G0004916.1 mouse_genomes_project 1 157568841 157584201 + 4930532M18Rik lincRNA lincRNA MGP_C3HHeJ_T0005875.1 MGP_C3HHeJ_G0004916.1 mouse_genomes_project 1 157570145 157584022 + 4930532M18Rik lincRNA lincRNA MGP_C3HHeJ_T0101592.1 MGP_C3HHeJ_G0039558.1 mouse_genomes_project 1 177406309 177406609 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098614.1 MGP_C3HHeJ_G0036808.1 mouse_genomes_project 1 51677720 51677829 - Gm23460 snRNA snRNA MGP_C3HHeJ_T0000691.1 MGP_C3HHeJ_G0000636.1 mouse_genomes_project 1 164553412 164554263 - TEC TEC MGP_C3HHeJ_T0098312.1 MGP_C3HHeJ_G0036524.1 mouse_genomes_project 1 51074951 51076230 - Gm29453 sense_intronic sense_intronic MGP_C3HHeJ_T0019923.1 MGP_C3HHeJ_G0015850.1 mouse_genomes_project 1 60698827 60729906 + Ctla4 protein_coding processed_transcript MGP_C3HHeJ_T0019924.1 MGP_C3HHeJ_G0015850.1 mouse_genomes_project 1 60726214 60733018 + MGP_C3HHeJ_P0019924 Ctla4 protein_coding protein_coding MGP_C3HHeJ_T0019925.1 MGP_C3HHeJ_G0015850.1 mouse_genomes_project 1 60726360 60731955 + MGP_C3HHeJ_P0019925 Ctla4 protein_coding protein_coding MGP_C3HHeJ_T0011775.1 MGP_C3HHeJ_G0009879.1 mouse_genomes_project 1 4761472 4763567 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012258.1 MGP_C3HHeJ_G0010362.1 mouse_genomes_project 1 191066931 191067528 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000758.1 MGP_C3HHeJ_G0000701.1 mouse_genomes_project 1 192886571 192887064 - TEC TEC MGP_C3HHeJ_T0024007.1 MGP_C3HHeJ_G0016711.1 mouse_genomes_project 1 197400262 197412220 + MGP_C3HHeJ_P0024007 Rd3 protein_coding protein_coding MGP_C3HHeJ_T0024008.1 MGP_C3HHeJ_G0016711.1 mouse_genomes_project 1 197400265 197409285 + MGP_C3HHeJ_P0024008 Rd3 protein_coding protein_coding MGP_C3HHeJ_T0024009.1 MGP_C3HHeJ_G0016711.1 mouse_genomes_project 1 197401143 197409284 + MGP_C3HHeJ_P0024009 Rd3 protein_coding protein_coding MGP_C3HHeJ_T0024010.1 MGP_C3HHeJ_G0016711.1 mouse_genomes_project 1 197407062 197409285 + Rd3 protein_coding retained_intron MGP_C3HHeJ_T0000368.1 MGP_C3HHeJ_G0000318.1 mouse_genomes_project 1 19413766 19415063 - TEC TEC MGP_C3HHeJ_T0019705.1 MGP_C3HHeJ_G0015815.1 mouse_genomes_project 1 57629136 57709134 + MGP_C3HHeJ_P0019705 Aox1 protein_coding protein_coding MGP_C3HHeJ_T0019706.1 MGP_C3HHeJ_G0015815.1 mouse_genomes_project 1 57629169 57673738 + Aox1 protein_coding retained_intron MGP_C3HHeJ_T0019707.1 MGP_C3HHeJ_G0015815.1 mouse_genomes_project 1 57629222 57662785 + MGP_C3HHeJ_P0019707 Aox1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0099820.1 MGP_C3HHeJ_G0038014.1 mouse_genomes_project 1 7071978 7072065 - Snord87 snoRNA snoRNA MGP_C3HHeJ_T0099897.1 MGP_C3HHeJ_G0038091.1 mouse_genomes_project 1 164424200 164424321 - Gm24988 snoRNA snoRNA MGP_C3HHeJ_T0020979.1 MGP_C3HHeJ_G0016058.1 mouse_genomes_project 1 90965721 91031971 - MGP_C3HHeJ_P0020979 Asb18 protein_coding protein_coding MGP_C3HHeJ_T0020980.1 MGP_C3HHeJ_G0016058.1 mouse_genomes_project 1 90968663 91032060 - MGP_C3HHeJ_P0020980 Asb18 protein_coding protein_coding MGP_C3HHeJ_T0020981.1 MGP_C3HHeJ_G0016058.1 mouse_genomes_project 1 90968750 91031971 - MGP_C3HHeJ_P0020981 Asb18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020982.1 MGP_C3HHeJ_G0016058.1 mouse_genomes_project 1 90968751 91031971 - MGP_C3HHeJ_P0020982 Asb18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021683.1 MGP_C3HHeJ_G0016211.1 mouse_genomes_project 1 133207730 133233284 + MGP_C3HHeJ_P0021683 Pigr protein_coding protein_coding MGP_C3HHeJ_T0021684.1 MGP_C3HHeJ_G0016211.1 mouse_genomes_project 1 133207934 133225728 + MGP_C3HHeJ_P0021684 Pigr protein_coding protein_coding MGP_C3HHeJ_T0021685.1 MGP_C3HHeJ_G0016211.1 mouse_genomes_project 1 133210056 133225696 + MGP_C3HHeJ_P0021685 Pigr protein_coding protein_coding MGP_C3HHeJ_T0000530.1 MGP_C3HHeJ_G0000477.1 mouse_genomes_project 1 90478909 90481293 + TEC TEC MGP_C3HHeJ_T0019912.1 MGP_C3HHeJ_G0015848.1 mouse_genomes_project 1 60302683 60389098 - MGP_C3HHeJ_P0019912 Raph1 protein_coding protein_coding MGP_C3HHeJ_T0019913.1 MGP_C3HHeJ_G0015848.1 mouse_genomes_project 1 60303576 60319903 - MGP_C3HHeJ_P0019913 Raph1 protein_coding protein_coding MGP_C3HHeJ_T0019914.1 MGP_C3HHeJ_G0015848.1 mouse_genomes_project 1 60303627 60389084 - MGP_C3HHeJ_P0019914 Raph1 protein_coding protein_coding MGP_C3HHeJ_T0019915.1 MGP_C3HHeJ_G0015848.1 mouse_genomes_project 1 60311028 60389088 - MGP_C3HHeJ_P0019915 Raph1 protein_coding protein_coding MGP_C3HHeJ_T0019916.1 MGP_C3HHeJ_G0015848.1 mouse_genomes_project 1 60313675 60316634 - Raph1 protein_coding retained_intron MGP_C3HHeJ_T0019917.1 MGP_C3HHeJ_G0015848.1 mouse_genomes_project 1 60321955 60323618 - Raph1 protein_coding retained_intron MGP_C3HHeJ_T0019918.1 MGP_C3HHeJ_G0015848.1 mouse_genomes_project 1 60334257 60343186 - Raph1 protein_coding retained_intron MGP_C3HHeJ_T0019919.1 MGP_C3HHeJ_G0015848.1 mouse_genomes_project 1 60346592 60389423 - MGP_C3HHeJ_P0019919 Raph1 protein_coding protein_coding MGP_C3HHeJ_T0101585.1 MGP_C3HHeJ_G0039551.1 mouse_genomes_project 1 142325117 142392772 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0002803.1 MGP_C3HHeJ_G0002651.1 mouse_genomes_project 1 108223347 108257261 + D630008O14Rik antisense antisense MGP_C3HHeJ_T0002804.1 MGP_C3HHeJ_G0002651.1 mouse_genomes_project 1 108223347 108240392 + D630008O14Rik antisense antisense MGP_C3HHeJ_T0002679.1 MGP_C3HHeJ_G0002561.1 mouse_genomes_project 1 2052156 2058264 + Gm16041 antisense antisense MGP_C3HHeJ_T0011861.1 MGP_C3HHeJ_G0009965.1 mouse_genomes_project 1 31151733 31153866 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011834.1 MGP_C3HHeJ_G0009938.1 mouse_genomes_project 1 22558393 22559591 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002744.1 MGP_C3HHeJ_G0002608.1 mouse_genomes_project 1 58754706 58796174 + Gm29018 antisense antisense MGP_C3HHeJ_T0002745.1 MGP_C3HHeJ_G0002608.1 mouse_genomes_project 1 58771745 58773597 + Gm29018 antisense antisense MGP_C3HHeJ_T0012154.1 MGP_C3HHeJ_G0010258.1 mouse_genomes_project 1 141648670 141649109 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018940.1 MGP_C3HHeJ_G0015671.1 mouse_genomes_project 1 30269433 30772174 + MGP_C3HHeJ_P0018940 Khdrbs2 protein_coding protein_coding MGP_C3HHeJ_T0018941.1 MGP_C3HHeJ_G0015671.1 mouse_genomes_project 1 30269448 30347722 + MGP_C3HHeJ_P0018941 Khdrbs2 protein_coding protein_coding MGP_C3HHeJ_T0018942.1 MGP_C3HHeJ_G0015671.1 mouse_genomes_project 1 30269467 30441263 + MGP_C3HHeJ_P0018942 Khdrbs2 protein_coding protein_coding MGP_C3HHeJ_T0018943.1 MGP_C3HHeJ_G0015671.1 mouse_genomes_project 1 30269606 30410615 + MGP_C3HHeJ_P0018943 Khdrbs2 protein_coding protein_coding MGP_C3HHeJ_T0009481.1 MGP_C3HHeJ_G0007614.1 mouse_genomes_project 1 200539960 200540048 + Mir29c miRNA miRNA MGP_C3HHeJ_T0098634.1 MGP_C3HHeJ_G0036828.1 mouse_genomes_project 1 88227798 88227893 - Gm23504 snRNA snRNA MGP_C3HHeJ_T0011899.1 MGP_C3HHeJ_G0010003.1 mouse_genomes_project 1 43033685 43034674 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021949.1 MGP_C3HHeJ_G0016270.1 mouse_genomes_project 1 136719498 136755719 - MGP_C3HHeJ_P0021949 Adora1 protein_coding protein_coding MGP_C3HHeJ_T0021950.1 MGP_C3HHeJ_G0016270.1 mouse_genomes_project 1 136719500 136756572 - MGP_C3HHeJ_P0021950 Adora1 protein_coding protein_coding MGP_C3HHeJ_T0021951.1 MGP_C3HHeJ_G0016270.1 mouse_genomes_project 1 136721624 136756538 - MGP_C3HHeJ_P0021951 Adora1 protein_coding protein_coding MGP_C3HHeJ_T0021952.1 MGP_C3HHeJ_G0016270.1 mouse_genomes_project 1 136723672 136756505 - MGP_C3HHeJ_P0021952 Adora1 protein_coding protein_coding MGP_C3HHeJ_T0099843.1 MGP_C3HHeJ_G0038037.1 mouse_genomes_project 1 44480996 44481127 + Gm23974 snoRNA snoRNA MGP_C3HHeJ_T0012065.1 MGP_C3HHeJ_G0010169.1 mouse_genomes_project 1 102122118 102122475 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022165.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140775175 140830151 - Ptprc protein_coding retained_intron MGP_C3HHeJ_T0022166.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140775721 140891937 - MGP_C3HHeJ_P0022166 Ptprc protein_coding protein_coding MGP_C3HHeJ_T0022167.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140775727 140891898 - MGP_C3HHeJ_P0022167 Ptprc protein_coding protein_coding MGP_C3HHeJ_T0022168.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140775734 140891931 - MGP_C3HHeJ_P0022168 Ptprc protein_coding protein_coding MGP_C3HHeJ_T0022169.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140825739 140829184 - Ptprc protein_coding retained_intron MGP_C3HHeJ_T0022170.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140825961 140891865 - MGP_C3HHeJ_P0022170 Ptprc protein_coding protein_coding MGP_C3HHeJ_T0022171.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140831046 140834428 - Ptprc protein_coding retained_intron MGP_C3HHeJ_T0022172.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140831547 140891931 - MGP_C3HHeJ_P0022172 Ptprc protein_coding protein_coding MGP_C3HHeJ_T0022173.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140833180 140891930 - Ptprc protein_coding retained_intron MGP_C3HHeJ_T0022174.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140837530 140891927 - Ptprc protein_coding retained_intron MGP_C3HHeJ_T0022175.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140840685 140892339 - Ptprc protein_coding retained_intron MGP_C3HHeJ_T0022176.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140888607 140891820 - Ptprc protein_coding retained_intron MGP_C3HHeJ_T0022177.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140889374 140891880 - Ptprc protein_coding retained_intron MGP_C3HHeJ_T0098260.1 MGP_C3HHeJ_G0036472.1 mouse_genomes_project 1 88611882 88612147 + Scarna6 scaRNA scaRNA MGP_C3HHeJ_T0011958.1 MGP_C3HHeJ_G0010062.1 mouse_genomes_project 1 59435080 59435465 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005848.1 MGP_C3HHeJ_G0004895.1 mouse_genomes_project 1 140623852 140627470 - Gm26979 lincRNA lincRNA MGP_C3HHeJ_T0019243.1 MGP_C3HHeJ_G0015722.1 mouse_genomes_project 1 37188156 37229032 - MGP_C3HHeJ_P0019243 Lonrf2 protein_coding protein_coding MGP_C3HHeJ_T0019244.1 MGP_C3HHeJ_G0015722.1 mouse_genomes_project 1 37188979 37213844 - MGP_C3HHeJ_P0019244 Lonrf2 protein_coding protein_coding MGP_C3HHeJ_T0019245.1 MGP_C3HHeJ_G0015722.1 mouse_genomes_project 1 37227800 37228978 - Lonrf2 protein_coding retained_intron MGP_C3HHeJ_T0002919.1 MGP_C3HHeJ_G0002742.1 mouse_genomes_project 1 195143215 195146695 - Gm26574 antisense antisense MGP_C3HHeJ_T0005676.1 MGP_C3HHeJ_G0004758.1 mouse_genomes_project 1 61279516 61311653 + Gm11588 lincRNA lincRNA MGP_C3HHeJ_T0011959.1 MGP_C3HHeJ_G0010063.1 mouse_genomes_project 1 59739857 59741919 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000600.1 MGP_C3HHeJ_G0000547.1 mouse_genomes_project 1 134531557 134537516 + TEC TEC MGP_C3HHeJ_T0098630.1 MGP_C3HHeJ_G0036824.1 mouse_genomes_project 1 74512872 74512979 + Gm25524 snRNA snRNA MGP_C3HHeJ_T0099846.1 MGP_C3HHeJ_G0038040.1 mouse_genomes_project 1 57009377 57009507 - Gm22371 snoRNA snoRNA MGP_C3HHeJ_T0098647.1 MGP_C3HHeJ_G0036841.1 mouse_genomes_project 1 130764607 130764712 - Gm25384 snRNA snRNA MGP_C3HHeJ_T0011857.1 MGP_C3HHeJ_G0009961.1 mouse_genomes_project 1 29328892 29329533 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020281.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74869552 74895093 + MGP_C3HHeJ_P0020281 Plcd4 protein_coding protein_coding MGP_C3HHeJ_T0020282.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74869552 74895093 + MGP_C3HHeJ_P0020282 Plcd4 protein_coding protein_coding MGP_C3HHeJ_T0020283.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74869552 74895093 + MGP_C3HHeJ_P0020283 Plcd4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020284.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74869567 74887911 + Plcd4 protein_coding retained_intron MGP_C3HHeJ_T0020285.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74869567 74893276 + MGP_C3HHeJ_P0020285 Plcd4 protein_coding protein_coding MGP_C3HHeJ_T0020286.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74869567 74893276 + MGP_C3HHeJ_P0020286 Plcd4 protein_coding protein_coding MGP_C3HHeJ_T0020287.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74871024 74872936 + Plcd4 protein_coding retained_intron MGP_C3HHeJ_T0020288.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74871028 74893276 + MGP_C3HHeJ_P0020288 Plcd4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020289.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74871028 74893276 + MGP_C3HHeJ_P0020289 Plcd4 protein_coding protein_coding MGP_C3HHeJ_T0020290.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74887731 74892600 + Plcd4 protein_coding processed_transcript MGP_C3HHeJ_T0020291.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74891735 74892925 + Plcd4 protein_coding retained_intron MGP_C3HHeJ_T0098637.1 MGP_C3HHeJ_G0036831.1 mouse_genomes_project 1 99402752 99402859 + Gm24465 snRNA snRNA MGP_C3HHeJ_T0020739.1 MGP_C3HHeJ_G0016001.1 mouse_genomes_project 1 86473673 86534298 + MGP_C3HHeJ_P0020739 Cab39 protein_coding protein_coding MGP_C3HHeJ_T0020740.1 MGP_C3HHeJ_G0016001.1 mouse_genomes_project 1 86473773 86500535 + MGP_C3HHeJ_P0020740 Cab39 protein_coding protein_coding MGP_C3HHeJ_T0020741.1 MGP_C3HHeJ_G0016001.1 mouse_genomes_project 1 86474693 86520231 + MGP_C3HHeJ_P0020741 Cab39 protein_coding protein_coding MGP_C3HHeJ_T0020742.1 MGP_C3HHeJ_G0016001.1 mouse_genomes_project 1 86474736 86533087 + MGP_C3HHeJ_P0020742 Cab39 protein_coding protein_coding MGP_C3HHeJ_T0020743.1 MGP_C3HHeJ_G0016001.1 mouse_genomes_project 1 86525991 86528982 + Cab39 protein_coding retained_intron MGP_C3HHeJ_T0005582.1 MGP_C3HHeJ_G0004689.1 mouse_genomes_project 1 15751042 15757125 + lincRNA lincRNA MGP_C3HHeJ_T0011887.1 MGP_C3HHeJ_G0009991.1 mouse_genomes_project 1 37686706 37686989 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009464.1 MGP_C3HHeJ_G0007597.1 mouse_genomes_project 1 174968580 174968642 - Gm27844 miRNA miRNA MGP_C3HHeJ_T0019350.1 MGP_C3HHeJ_G0015748.1 mouse_genomes_project 1 41666228 41720209 - MGP_C3HHeJ_P0019350 Tgfbrap1 protein_coding protein_coding MGP_C3HHeJ_T0019351.1 MGP_C3HHeJ_G0015748.1 mouse_genomes_project 1 41666248 41714319 - MGP_C3HHeJ_P0019351 Tgfbrap1 protein_coding protein_coding MGP_C3HHeJ_T0019352.1 MGP_C3HHeJ_G0015748.1 mouse_genomes_project 1 41673736 41679962 - Tgfbrap1 protein_coding retained_intron MGP_C3HHeJ_T0019353.1 MGP_C3HHeJ_G0015748.1 mouse_genomes_project 1 41678919 41714037 - MGP_C3HHeJ_P0019353 Tgfbrap1 protein_coding protein_coding MGP_C3HHeJ_T0019354.1 MGP_C3HHeJ_G0015748.1 mouse_genomes_project 1 41693093 41720195 - MGP_C3HHeJ_P0019354 Tgfbrap1 protein_coding protein_coding MGP_C3HHeJ_T0019355.1 MGP_C3HHeJ_G0015748.1 mouse_genomes_project 1 41695838 41714053 - Tgfbrap1 protein_coding retained_intron MGP_C3HHeJ_T0019356.1 MGP_C3HHeJ_G0015748.1 mouse_genomes_project 1 41696079 41720224 - Tgfbrap1 protein_coding retained_intron MGP_C3HHeJ_T0019357.1 MGP_C3HHeJ_G0015748.1 mouse_genomes_project 1 41697213 41719951 - MGP_C3HHeJ_P0019357 Tgfbrap1 protein_coding protein_coding MGP_C3HHeJ_T0019213.1 MGP_C3HHeJ_G0015718.1 mouse_genomes_project 1 36350805 36364223 - MGP_C3HHeJ_P0019213 Txndc9 protein_coding protein_coding MGP_C3HHeJ_T0019214.1 MGP_C3HHeJ_G0015718.1 mouse_genomes_project 1 36353010 36364801 - MGP_C3HHeJ_P0019214 Txndc9 protein_coding protein_coding MGP_C3HHeJ_T0019215.1 MGP_C3HHeJ_G0015718.1 mouse_genomes_project 1 36353010 36364151 - MGP_C3HHeJ_P0019215 Txndc9 protein_coding protein_coding MGP_C3HHeJ_T0019216.1 MGP_C3HHeJ_G0015718.1 mouse_genomes_project 1 36353012 36364132 - Txndc9 protein_coding retained_intron MGP_C3HHeJ_T0019217.1 MGP_C3HHeJ_G0015718.1 mouse_genomes_project 1 36353256 36362761 - MGP_C3HHeJ_P0019217 Txndc9 protein_coding protein_coding MGP_C3HHeJ_T0019218.1 MGP_C3HHeJ_G0015718.1 mouse_genomes_project 1 36353259 36364524 - MGP_C3HHeJ_P0019218 Txndc9 protein_coding protein_coding MGP_C3HHeJ_T0019219.1 MGP_C3HHeJ_G0015718.1 mouse_genomes_project 1 36357173 36363574 - MGP_C3HHeJ_P0019219 Txndc9 protein_coding protein_coding MGP_C3HHeJ_T0019220.1 MGP_C3HHeJ_G0015718.1 mouse_genomes_project 1 36362830 36364170 - Txndc9 protein_coding retained_intron MGP_C3HHeJ_T0002721.1 MGP_C3HHeJ_G0002589.1 mouse_genomes_project 1 36689888 36693917 + Gm16151 antisense antisense MGP_C3HHeJ_T0000732.1 MGP_C3HHeJ_G0000676.1 mouse_genomes_project 1 184978135 184980599 + TEC TEC MGP_C3HHeJ_T0022542.1 MGP_C3HHeJ_G0016385.1 mouse_genomes_project 1 159386983 159422831 + MGP_C3HHeJ_P0022542 Tor1aip2 protein_coding protein_coding MGP_C3HHeJ_T0022543.1 MGP_C3HHeJ_G0016385.1 mouse_genomes_project 1 159387306 159406810 + MGP_C3HHeJ_P0022543 Tor1aip2 protein_coding protein_coding MGP_C3HHeJ_T0022544.1 MGP_C3HHeJ_G0016385.1 mouse_genomes_project 1 159387352 159413430 + MGP_C3HHeJ_P0022544 Tor1aip2 protein_coding protein_coding MGP_C3HHeJ_T0022545.1 MGP_C3HHeJ_G0016385.1 mouse_genomes_project 1 159387713 159405373 + MGP_C3HHeJ_P0022545 Tor1aip2 protein_coding protein_coding MGP_C3HHeJ_T0022546.1 MGP_C3HHeJ_G0016385.1 mouse_genomes_project 1 159392463 159404402 + Tor1aip2 protein_coding processed_transcript MGP_C3HHeJ_T0022547.1 MGP_C3HHeJ_G0016385.1 mouse_genomes_project 1 159392463 159422831 + MGP_C3HHeJ_P0022547 Tor1aip2 protein_coding protein_coding MGP_C3HHeJ_T0022548.1 MGP_C3HHeJ_G0016385.1 mouse_genomes_project 1 159392490 159405373 + MGP_C3HHeJ_P0022548 Tor1aip2 protein_coding protein_coding MGP_C3HHeJ_T0022549.1 MGP_C3HHeJ_G0016385.1 mouse_genomes_project 1 159392490 159405373 + MGP_C3HHeJ_P0022549 Tor1aip2 protein_coding protein_coding MGP_C3HHeJ_T0022550.1 MGP_C3HHeJ_G0016385.1 mouse_genomes_project 1 159417195 159418823 + Tor1aip2 protein_coding retained_intron MGP_C3HHeJ_T0021694.1 MGP_C3HHeJ_G0016214.1 mouse_genomes_project 1 133289062 133292879 - MGP_C3HHeJ_P0021694 Il20 protein_coding protein_coding MGP_C3HHeJ_T0021695.1 MGP_C3HHeJ_G0016214.1 mouse_genomes_project 1 133289492 133292654 - MGP_C3HHeJ_P0021695 Il20 protein_coding protein_coding MGP_C3HHeJ_T0021459.1 MGP_C3HHeJ_G0016162.1 mouse_genomes_project 1 120833167 121055465 - MGP_C3HHeJ_P0021459 Gli2 protein_coding protein_coding MGP_C3HHeJ_T0021460.1 MGP_C3HHeJ_G0016162.1 mouse_genomes_project 1 120847501 121055185 - MGP_C3HHeJ_P0021460 Gli2 protein_coding protein_coding MGP_C3HHeJ_T0021461.1 MGP_C3HHeJ_G0016162.1 mouse_genomes_project 1 120847501 121055185 - MGP_C3HHeJ_P0021461 Gli2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021462.1 MGP_C3HHeJ_G0016162.1 mouse_genomes_project 1 120847501 121055185 - MGP_C3HHeJ_P0021462 Gli2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021463.1 MGP_C3HHeJ_G0016162.1 mouse_genomes_project 1 120847501 121055185 - MGP_C3HHeJ_P0021463 Gli2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021464.1 MGP_C3HHeJ_G0016162.1 mouse_genomes_project 1 120847501 121055185 - MGP_C3HHeJ_P0021464 Gli2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021465.1 MGP_C3HHeJ_G0016162.1 mouse_genomes_project 1 120847503 121055185 - MGP_C3HHeJ_P0021465 Gli2 protein_coding protein_coding MGP_C3HHeJ_T0021466.1 MGP_C3HHeJ_G0016162.1 mouse_genomes_project 1 120847503 121055185 - MGP_C3HHeJ_P0021466 Gli2 protein_coding protein_coding MGP_C3HHeJ_T0021467.1 MGP_C3HHeJ_G0016162.1 mouse_genomes_project 1 120866989 120983667 - Gli2 protein_coding processed_transcript MGP_C3HHeJ_T0019475.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 50975664 51140842 - MGP_C3HHeJ_P0019475 Myo1b protein_coding protein_coding MGP_C3HHeJ_T0019476.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 50975880 51140712 - MGP_C3HHeJ_P0019476 Myo1b protein_coding protein_coding MGP_C3HHeJ_T0019477.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 50975887 51132083 - MGP_C3HHeJ_P0019477 Myo1b protein_coding protein_coding MGP_C3HHeJ_T0019478.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 50975892 51140699 - MGP_C3HHeJ_P0019478 Myo1b protein_coding protein_coding MGP_C3HHeJ_T0019479.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 50986432 50990559 - Myo1b protein_coding retained_intron MGP_C3HHeJ_T0019480.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 50988610 50996980 - Myo1b protein_coding processed_transcript MGP_C3HHeJ_T0019481.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 50988678 50993481 - Myo1b protein_coding retained_intron MGP_C3HHeJ_T0019482.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 50992964 51002450 - Myo1b protein_coding processed_transcript MGP_C3HHeJ_T0019483.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 51002406 51021260 - Myo1b protein_coding processed_transcript MGP_C3HHeJ_T0019484.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 51005732 51008239 - Myo1b protein_coding retained_intron MGP_C3HHeJ_T0019485.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 51023512 51121304 - MGP_C3HHeJ_P0019485 Myo1b protein_coding protein_coding MGP_C3HHeJ_T0019486.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 51025238 51047680 - Myo1b protein_coding processed_transcript MGP_C3HHeJ_T0019487.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 51037801 51140683 - Myo1b protein_coding retained_intron MGP_C3HHeJ_T0019488.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 51089544 51140692 - Myo1b protein_coding retained_intron MGP_C3HHeJ_T0005895.1 MGP_C3HHeJ_G0004931.1 mouse_genomes_project 1 168109591 168111139 + Gm32391 lincRNA lincRNA MGP_C3HHeJ_T0023420.1 MGP_C3HHeJ_G0016580.1 mouse_genomes_project 1 178586586 178594780 - MGP_C3HHeJ_P0023420 protein_coding protein_coding MGP_C3HHeJ_T0023421.1 MGP_C3HHeJ_G0016580.1 mouse_genomes_project 1 178587816 178594835 - protein_coding retained_intron MGP_C3HHeJ_T0098616.1 MGP_C3HHeJ_G0036810.1 mouse_genomes_project 1 57054747 57054904 + Gm24014 snRNA snRNA MGP_C3HHeJ_T0098333.1 MGP_C3HHeJ_G0036544.1 mouse_genomes_project 1 164273954 164274594 - Gm37328 sense_intronic sense_intronic MGP_C3HHeJ_T0012233.1 MGP_C3HHeJ_G0010337.1 mouse_genomes_project 1 176020907 176021459 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000633.1 MGP_C3HHeJ_G0000578.1 mouse_genomes_project 1 141883122 141885753 + TEC TEC MGP_C3HHeJ_T0020149.1 MGP_C3HHeJ_G0015895.1 mouse_genomes_project 1 71756687 71779213 + MGP_C3HHeJ_P0020149 Atic protein_coding protein_coding MGP_C3HHeJ_T0020150.1 MGP_C3HHeJ_G0015895.1 mouse_genomes_project 1 71756716 71762736 + Atic protein_coding retained_intron MGP_C3HHeJ_T0020151.1 MGP_C3HHeJ_G0015895.1 mouse_genomes_project 1 71756716 71759489 + Atic protein_coding retained_intron MGP_C3HHeJ_T0020152.1 MGP_C3HHeJ_G0015895.1 mouse_genomes_project 1 71756716 71772901 + Atic protein_coding retained_intron MGP_C3HHeJ_T0020153.1 MGP_C3HHeJ_G0015895.1 mouse_genomes_project 1 71756750 71762736 + Atic protein_coding retained_intron MGP_C3HHeJ_T0020154.1 MGP_C3HHeJ_G0015895.1 mouse_genomes_project 1 71768403 71772498 + Atic protein_coding retained_intron MGP_C3HHeJ_T0022849.1 MGP_C3HHeJ_G0016438.1 mouse_genomes_project 1 167315896 167336751 - MGP_C3HHeJ_P0022849 Mettl11b protein_coding protein_coding MGP_C3HHeJ_T0022850.1 MGP_C3HHeJ_G0016438.1 mouse_genomes_project 1 167316639 167336751 - MGP_C3HHeJ_P0022850 Mettl11b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0016811.1 MGP_C3HHeJ_G0014872.1 mouse_genomes_project 1 138732115 138737076 - Gm15850 processed_transcript processed_transcript MGP_C3HHeJ_T0016812.1 MGP_C3HHeJ_G0014872.1 mouse_genomes_project 1 138733656 138737064 - Gm15850 processed_transcript processed_transcript MGP_C3HHeJ_T0016813.1 MGP_C3HHeJ_G0014872.1 mouse_genomes_project 1 138733656 138737064 - Gm15850 processed_transcript processed_transcript MGP_C3HHeJ_T0016814.1 MGP_C3HHeJ_G0014872.1 mouse_genomes_project 1 138733656 138737064 - Gm15850 processed_transcript processed_transcript MGP_C3HHeJ_T0011931.1 MGP_C3HHeJ_G0010035.1 mouse_genomes_project 1 51163847 51164259 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018598.1 MGP_C3HHeJ_G0015599.1 mouse_genomes_project 1 6829840 6858829 - MGP_C3HHeJ_P0018598 Vcpip1 protein_coding protein_coding MGP_C3HHeJ_T0016774.1 MGP_C3HHeJ_G0014860.1 mouse_genomes_project 1 64602167 64613158 - 2810408I11Rik processed_transcript antisense MGP_C3HHeJ_T0016775.1 MGP_C3HHeJ_G0014860.1 mouse_genomes_project 1 64605568 64613107 - 2810408I11Rik processed_transcript antisense MGP_C3HHeJ_T0016776.1 MGP_C3HHeJ_G0014860.1 mouse_genomes_project 1 64611622 64613127 - 2810408I11Rik processed_transcript retained_intron MGP_C3HHeJ_T0000474.1 MGP_C3HHeJ_G0000421.1 mouse_genomes_project 1 66797988 66800169 + TEC TEC MGP_C3HHeJ_T0005926.1 MGP_C3HHeJ_G0004958.1 mouse_genomes_project 1 182303626 182305028 - 2310043L19Rik lincRNA lincRNA MGP_C3HHeJ_T0020747.1 MGP_C3HHeJ_G0016003.1 mouse_genomes_project 1 86617315 86620587 + MGP_C3HHeJ_P0020747 4933407L21Rik protein_coding protein_coding MGP_C3HHeJ_T0020748.1 MGP_C3HHeJ_G0016003.1 mouse_genomes_project 1 86617559 86629450 + MGP_C3HHeJ_P0020748 4933407L21Rik protein_coding protein_coding MGP_C3HHeJ_T0020749.1 MGP_C3HHeJ_G0016003.1 mouse_genomes_project 1 86617718 86620587 + 4933407L21Rik protein_coding retained_intron MGP_C3HHeJ_T0019150.1 MGP_C3HHeJ_G0015706.1 mouse_genomes_project 1 35533481 35577535 + MGP_C3HHeJ_P0019150 Cnga3 protein_coding protein_coding MGP_C3HHeJ_T0019151.1 MGP_C3HHeJ_G0015706.1 mouse_genomes_project 1 35538113 35597844 + MGP_C3HHeJ_P0019151 Cnga3 protein_coding protein_coding MGP_C3HHeJ_T0019152.1 MGP_C3HHeJ_G0015706.1 mouse_genomes_project 1 35538113 35597844 + MGP_C3HHeJ_P0019152 Cnga3 protein_coding protein_coding MGP_C3HHeJ_T0019153.1 MGP_C3HHeJ_G0015706.1 mouse_genomes_project 1 35538934 35599073 + MGP_C3HHeJ_P0019153 Cnga3 protein_coding protein_coding MGP_C3HHeJ_T0012140.1 MGP_C3HHeJ_G0010244.1 mouse_genomes_project 1 133844512 133844768 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012015.1 MGP_C3HHeJ_G0010119.1 mouse_genomes_project 1 79937024 79938383 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011791.1 MGP_C3HHeJ_G0009895.1 mouse_genomes_project 1 6916449 6916806 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024057.1 MGP_C3HHeJ_G0016719.1 mouse_genomes_project 1 198566374 198585282 + MGP_C3HHeJ_P0024057 Irf6 protein_coding protein_coding MGP_C3HHeJ_T0024058.1 MGP_C3HHeJ_G0016719.1 mouse_genomes_project 1 198566417 198580127 + Irf6 protein_coding retained_intron MGP_C3HHeJ_T0024059.1 MGP_C3HHeJ_G0016719.1 mouse_genomes_project 1 198569926 198577439 + Irf6 protein_coding retained_intron MGP_C3HHeJ_T0024061.1 MGP_C3HHeJ_G0016719.1 mouse_genomes_project 1 198581761 198582748 + Irf6 protein_coding retained_intron MGP_C3HHeJ_T0000471.1 MGP_C3HHeJ_G0000418.1 mouse_genomes_project 1 66758959 66761514 - TEC TEC MGP_C3HHeJ_T0005593.1 MGP_C3HHeJ_G0004699.1 mouse_genomes_project 1 22680984 22681636 - Gm29414 lincRNA lincRNA MGP_C3HHeJ_T0002710.1 MGP_C3HHeJ_G0002580.1 mouse_genomes_project 1 33027768 33030317 - Gm38336 antisense antisense MGP_C3HHeJ_T0098626.1 MGP_C3HHeJ_G0036820.1 mouse_genomes_project 1 70790736 70790843 + Gm23422 snRNA snRNA MGP_C3HHeJ_T0022114.1 MGP_C3HHeJ_G0016303.1 mouse_genomes_project 1 138653218 138653785 + MGP_C3HHeJ_P0022114 Ascl5 protein_coding protein_coding MGP_C3HHeJ_T0023223.1 MGP_C3HHeJ_G0016522.1 mouse_genomes_project 1 175274097 175276441 - MGP_C3HHeJ_P0023223 Klhdc9 protein_coding protein_coding MGP_C3HHeJ_T0021768.1 MGP_C3HHeJ_G0016233.1 mouse_genomes_project 1 134428296 134448492 + MGP_C3HHeJ_P0021768 Elk4 protein_coding protein_coding MGP_C3HHeJ_T0021769.1 MGP_C3HHeJ_G0016233.1 mouse_genomes_project 1 134428564 134445712 + MGP_C3HHeJ_P0021769 Elk4 protein_coding protein_coding MGP_C3HHeJ_T0021770.1 MGP_C3HHeJ_G0016233.1 mouse_genomes_project 1 134428787 134435214 + Elk4 protein_coding processed_transcript MGP_C3HHeJ_T0021771.1 MGP_C3HHeJ_G0016233.1 mouse_genomes_project 1 134428797 134435072 + Elk4 protein_coding processed_transcript MGP_C3HHeJ_T0021772.1 MGP_C3HHeJ_G0016233.1 mouse_genomes_project 1 134428985 134439383 + MGP_C3HHeJ_P0021772 Elk4 protein_coding protein_coding MGP_C3HHeJ_T0021773.1 MGP_C3HHeJ_G0016233.1 mouse_genomes_project 1 134438885 134454597 + MGP_C3HHeJ_P0021773 Elk4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021774.1 MGP_C3HHeJ_G0016233.1 mouse_genomes_project 1 134439520 134453679 + Elk4 protein_coding processed_transcript MGP_C3HHeJ_T0005937.1 MGP_C3HHeJ_G0004966.1 mouse_genomes_project 1 186881134 186891022 + lincRNA lincRNA MGP_C3HHeJ_T0005938.1 MGP_C3HHeJ_G0004966.1 mouse_genomes_project 1 186884071 186891000 + lincRNA lincRNA MGP_C3HHeJ_T0005939.1 MGP_C3HHeJ_G0004966.1 mouse_genomes_project 1 186889738 186892055 + lincRNA lincRNA MGP_C3HHeJ_T0000610.1 MGP_C3HHeJ_G0000556.1 mouse_genomes_project 1 138065574 138066595 - TEC TEC MGP_C3HHeJ_T0011792.1 MGP_C3HHeJ_G0009896.1 mouse_genomes_project 1 7852744 7853236 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005857.1 MGP_C3HHeJ_G0004902.1 mouse_genomes_project 1 142147757 142153369 + Gm34816 lincRNA lincRNA MGP_C3HHeJ_T0000364.1 MGP_C3HHeJ_G0000314.1 mouse_genomes_project 1 17100037 17103076 + TEC TEC MGP_C3HHeJ_T0023261.1 MGP_C3HHeJ_G0016533.1 mouse_genomes_project 1 175962049 175984942 + MGP_C3HHeJ_P0023261 Cd48 protein_coding protein_coding MGP_C3HHeJ_T0023262.1 MGP_C3HHeJ_G0016533.1 mouse_genomes_project 1 175962050 175984940 + MGP_C3HHeJ_P0023262 Cd48 protein_coding protein_coding MGP_C3HHeJ_T0000719.1 MGP_C3HHeJ_G0000664.1 mouse_genomes_project 1 181377165 181378584 - TEC TEC MGP_C3HHeJ_T0012106.1 MGP_C3HHeJ_G0010210.1 mouse_genomes_project 1 120233335 120234498 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002823.1 MGP_C3HHeJ_G0002666.1 mouse_genomes_project 1 135725086 135744451 - Gm19461 antisense antisense MGP_C3HHeJ_T0002824.1 MGP_C3HHeJ_G0002666.1 mouse_genomes_project 1 135725896 135731797 - Gm19461 antisense antisense MGP_C3HHeJ_T0002825.1 MGP_C3HHeJ_G0002666.1 mouse_genomes_project 1 135728591 135728981 - Gm19461 antisense antisense MGP_C3HHeJ_T0002826.1 MGP_C3HHeJ_G0002666.1 mouse_genomes_project 1 135728971 135731031 - Gm19461 antisense antisense MGP_C3HHeJ_T0002827.1 MGP_C3HHeJ_G0002666.1 mouse_genomes_project 1 135731219 135733351 - Gm19461 antisense antisense MGP_C3HHeJ_T0011978.1 MGP_C3HHeJ_G0010082.1 mouse_genomes_project 1 62891770 62892138 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101590.1 MGP_C3HHeJ_G0039556.1 mouse_genomes_project 1 173677447 173677651 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012096.1 MGP_C3HHeJ_G0010200.1 mouse_genomes_project 1 114029575 114030240 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005963.1 MGP_C3HHeJ_G0004983.1 mouse_genomes_project 1 190242631 190250192 + Gm37662 lincRNA lincRNA MGP_C3HHeJ_T0002790.1 MGP_C3HHeJ_G0002642.1 mouse_genomes_project 1 94001286 94008031 - Gm29480 antisense antisense MGP_C3HHeJ_T0005572.1 MGP_C3HHeJ_G0004683.1 mouse_genomes_project 1 7071469 7073629 - Snhg6 lincRNA lincRNA MGP_C3HHeJ_T0005573.1 MGP_C3HHeJ_G0004683.1 mouse_genomes_project 1 7071533 7072740 - Snhg6 lincRNA lincRNA MGP_C3HHeJ_T0005574.1 MGP_C3HHeJ_G0004683.1 mouse_genomes_project 1 7071535 7073628 - Snhg6 lincRNA lincRNA MGP_C3HHeJ_T0005575.1 MGP_C3HHeJ_G0004683.1 mouse_genomes_project 1 7071535 7072414 - Snhg6 lincRNA lincRNA MGP_C3HHeJ_T0005576.1 MGP_C3HHeJ_G0004683.1 mouse_genomes_project 1 7071535 7073614 - Snhg6 lincRNA lincRNA MGP_C3HHeJ_T0011835.1 MGP_C3HHeJ_G0009939.1 mouse_genomes_project 1 22669404 22670207 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019210.1 MGP_C3HHeJ_G0015717.1 mouse_genomes_project 1 36307711 36309978 - Lyg1 protein_coding processed_transcript MGP_C3HHeJ_T0019211.1 MGP_C3HHeJ_G0015717.1 mouse_genomes_project 1 36307711 36318740 - MGP_C3HHeJ_P0019211 Lyg1 protein_coding protein_coding MGP_C3HHeJ_T0019212.1 MGP_C3HHeJ_G0015717.1 mouse_genomes_project 1 36307713 36318740 - MGP_C3HHeJ_P0019212 Lyg1 protein_coding protein_coding MGP_C3HHeJ_T0023282.1 MGP_C3HHeJ_G0016539.1 mouse_genomes_project 1 176351890 176357175 - MGP_C3HHeJ_P0023282 Nhlh1 protein_coding protein_coding MGP_C3HHeJ_T0012155.1 MGP_C3HHeJ_G0010259.1 mouse_genomes_project 1 141716005 141716642 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012100.1 MGP_C3HHeJ_G0010204.1 mouse_genomes_project 1 115470896 115471432 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000489.1 MGP_C3HHeJ_G0000436.1 mouse_genomes_project 1 74824670 74827533 - TEC TEC MGP_C3HHeJ_T0019326.1 MGP_C3HHeJ_G0015741.1 mouse_genomes_project 1 39047183 39102165 + MGP_C3HHeJ_P0019326 Slc9a4 protein_coding protein_coding MGP_C3HHeJ_T0019327.1 MGP_C3HHeJ_G0015741.1 mouse_genomes_project 1 39047306 39052524 + Slc9a4 protein_coding processed_transcript MGP_C3HHeJ_T0019328.1 MGP_C3HHeJ_G0015741.1 mouse_genomes_project 1 39069690 39072001 + Slc9a4 protein_coding processed_transcript MGP_C3HHeJ_T0019329.1 MGP_C3HHeJ_G0015741.1 mouse_genomes_project 1 39100407 39101856 + Slc9a4 protein_coding retained_intron MGP_C3HHeJ_T0009397.1 MGP_C3HHeJ_G0007530.1 mouse_genomes_project 1 42576845 42576955 - Gm24180 miRNA miRNA MGP_C3HHeJ_T0000515.1 MGP_C3HHeJ_G0000462.1 mouse_genomes_project 1 85418060 85422763 - TEC TEC MGP_C3HHeJ_T0020609.1 MGP_C3HHeJ_G0015976.1 mouse_genomes_project 1 80231434 80298448 - MGP_C3HHeJ_P0020609 Serpine2 protein_coding protein_coding MGP_C3HHeJ_T0020610.1 MGP_C3HHeJ_G0015976.1 mouse_genomes_project 1 80234032 80259664 - MGP_C3HHeJ_P0020610 Serpine2 protein_coding protein_coding MGP_C3HHeJ_T0020611.1 MGP_C3HHeJ_G0015976.1 mouse_genomes_project 1 80240243 80300952 - MGP_C3HHeJ_P0020611 Serpine2 protein_coding protein_coding MGP_C3HHeJ_T0020612.1 MGP_C3HHeJ_G0015976.1 mouse_genomes_project 1 80253008 80298448 - Serpine2 protein_coding retained_intron MGP_C3HHeJ_T0020613.1 MGP_C3HHeJ_G0015976.1 mouse_genomes_project 1 80255259 80258646 - Serpine2 protein_coding retained_intron MGP_C3HHeJ_T0020614.1 MGP_C3HHeJ_G0015976.1 mouse_genomes_project 1 80295945 80297083 - Serpine2 protein_coding retained_intron MGP_C3HHeJ_T0002939.1 MGP_C3HHeJ_G0002755.1 mouse_genomes_project 1 198621681 198646474 + 4930570N18Rik antisense antisense MGP_C3HHeJ_T0000329.1 MGP_C3HHeJ_G0000279.1 mouse_genomes_project 1 1851328 1852481 - TEC TEC MGP_C3HHeJ_T0022614.1 MGP_C3HHeJ_G0016397.1 mouse_genomes_project 1 160495041 160791677 - MGP_C3HHeJ_P0022614 Rasal2 protein_coding protein_coding MGP_C3HHeJ_T0022615.1 MGP_C3HHeJ_G0016397.1 mouse_genomes_project 1 160500390 160791016 - MGP_C3HHeJ_P0022615 Rasal2 protein_coding protein_coding MGP_C3HHeJ_T0022616.1 MGP_C3HHeJ_G0016397.1 mouse_genomes_project 1 160539956 160617666 - MGP_C3HHeJ_P0022616 Rasal2 protein_coding protein_coding MGP_C3HHeJ_T0022617.1 MGP_C3HHeJ_G0016397.1 mouse_genomes_project 1 160540149 160629618 - MGP_C3HHeJ_P0022617 Rasal2 protein_coding protein_coding MGP_C3HHeJ_T0022618.1 MGP_C3HHeJ_G0016397.1 mouse_genomes_project 1 160543084 160545427 - Rasal2 protein_coding processed_transcript MGP_C3HHeJ_T0022619.1 MGP_C3HHeJ_G0016397.1 mouse_genomes_project 1 160543084 160605262 - MGP_C3HHeJ_P0022619 Rasal2 protein_coding protein_coding MGP_C3HHeJ_T0022620.1 MGP_C3HHeJ_G0016397.1 mouse_genomes_project 1 160658160 160791677 - Rasal2 protein_coding retained_intron MGP_C3HHeJ_T0000597.1 MGP_C3HHeJ_G0000544.1 mouse_genomes_project 1 133737964 133739346 - TEC TEC MGP_C3HHeJ_T0023826.1 MGP_C3HHeJ_G0016675.1 mouse_genomes_project 1 190450503 190498123 - MGP_C3HHeJ_P0023826 Iars2 protein_coding protein_coding MGP_C3HHeJ_T0023827.1 MGP_C3HHeJ_G0016675.1 mouse_genomes_project 1 190451346 190454064 - Iars2 protein_coding processed_transcript MGP_C3HHeJ_T0023828.1 MGP_C3HHeJ_G0016675.1 mouse_genomes_project 1 190460825 190498123 - MGP_C3HHeJ_P0023828 Iars2 protein_coding protein_coding MGP_C3HHeJ_T0023829.1 MGP_C3HHeJ_G0016675.1 mouse_genomes_project 1 190478713 190498123 - MGP_C3HHeJ_P0023829 Iars2 protein_coding protein_coding MGP_C3HHeJ_T0023830.1 MGP_C3HHeJ_G0016675.1 mouse_genomes_project 1 190489910 190498123 - Iars2 protein_coding retained_intron MGP_C3HHeJ_T0019692.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57552992 57567976 - MGP_C3HHeJ_P0019692 Kctd18 protein_coding protein_coding MGP_C3HHeJ_T0019693.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57553139 57568020 - MGP_C3HHeJ_P0019693 Kctd18 protein_coding protein_coding MGP_C3HHeJ_T0019694.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57553144 57567416 - MGP_C3HHeJ_P0019694 Kctd18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019695.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57553963 57617175 - MGP_C3HHeJ_P0019695 Kctd18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019696.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57554471 57567940 - MGP_C3HHeJ_P0019696 Kctd18 protein_coding protein_coding MGP_C3HHeJ_T0019697.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57554583 57561339 - Kctd18 protein_coding retained_intron MGP_C3HHeJ_T0019698.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57554611 57559994 - Kctd18 protein_coding retained_intron MGP_C3HHeJ_T0019699.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57557945 57567944 - Kctd18 protein_coding retained_intron MGP_C3HHeJ_T0019700.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57559049 57560873 - Kctd18 protein_coding retained_intron MGP_C3HHeJ_T0019701.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57561457 57567971 - Kctd18 protein_coding retained_intron MGP_C3HHeJ_T0019702.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57561493 57567971 - Kctd18 protein_coding retained_intron MGP_C3HHeJ_T0011902.1 MGP_C3HHeJ_G0010006.1 mouse_genomes_project 1 43539273 43539730 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009455.1 MGP_C3HHeJ_G0007588.1 mouse_genomes_project 1 163813333 163813442 - Mir1927 miRNA miRNA MGP_C3HHeJ_T0023009.1 MGP_C3HHeJ_G0016474.1 mouse_genomes_project 1 170389681 170407382 - MGP_C3HHeJ_P0023009 Fmo9 protein_coding protein_coding MGP_C3HHeJ_T0000685.1 MGP_C3HHeJ_G0000630.1 mouse_genomes_project 1 164275646 164276073 - TEC TEC MGP_C3HHeJ_T0019858.1 MGP_C3HHeJ_G0015840.1 mouse_genomes_project 1 59537783 59662795 + MGP_C3HHeJ_P0019858 Bmpr2 protein_coding protein_coding MGP_C3HHeJ_T0019859.1 MGP_C3HHeJ_G0015840.1 mouse_genomes_project 1 59630177 59632778 + Bmpr2 protein_coding retained_intron MGP_C3HHeJ_T0019860.1 MGP_C3HHeJ_G0015840.1 mouse_genomes_project 1 59631903 59636622 + Bmpr2 protein_coding retained_intron MGP_C3HHeJ_T0020720.1 MGP_C3HHeJ_G0015997.1 mouse_genomes_project 1 85447158 85518769 + MGP_C3HHeJ_P0020720 Fbxo36 protein_coding protein_coding MGP_C3HHeJ_T0020721.1 MGP_C3HHeJ_G0015997.1 mouse_genomes_project 1 85447170 85518769 + Fbxo36 protein_coding processed_transcript MGP_C3HHeJ_T0020722.1 MGP_C3HHeJ_G0015997.1 mouse_genomes_project 1 85479893 85518769 + Fbxo36 protein_coding processed_transcript MGP_C3HHeJ_T0020723.1 MGP_C3HHeJ_G0015997.1 mouse_genomes_project 1 85482910 85518769 + Fbxo36 protein_coding processed_transcript MGP_C3HHeJ_T0024103.1 MGP_C3HHeJ_G0016726.1 mouse_genomes_project 1 200112411 200115073 + Plxna2 protein_coding retained_intron MGP_C3HHeJ_T0024104.1 MGP_C3HHeJ_G0016726.1 mouse_genomes_project 1 200114030 200313869 + MGP_C3HHeJ_P0024104 Plxna2 protein_coding protein_coding MGP_C3HHeJ_T0024105.1 MGP_C3HHeJ_G0016726.1 mouse_genomes_project 1 200138842 200153580 + Plxna2 protein_coding processed_transcript MGP_C3HHeJ_T0024106.1 MGP_C3HHeJ_G0016726.1 mouse_genomes_project 1 200260779 200282848 + MGP_C3HHeJ_P0024106 Plxna2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024107.1 MGP_C3HHeJ_G0016726.1 mouse_genomes_project 1 200300925 200311227 + Plxna2 protein_coding retained_intron MGP_C3HHeJ_T0012080.1 MGP_C3HHeJ_G0010184.1 mouse_genomes_project 1 108113731 108114002 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012143.1 MGP_C3HHeJ_G0010247.1 mouse_genomes_project 1 136544797 136545735 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018818.1 MGP_C3HHeJ_G0015640.1 mouse_genomes_project 1 17520774 18081141 - MGP_C3HHeJ_P0018818 Pkhd1 protein_coding protein_coding MGP_C3HHeJ_T0018819.1 MGP_C3HHeJ_G0015640.1 mouse_genomes_project 1 17840823 17878432 - Pkhd1 protein_coding processed_transcript MGP_C3HHeJ_T0018820.1 MGP_C3HHeJ_G0015640.1 mouse_genomes_project 1 18048372 18081141 - Pkhd1 protein_coding retained_intron MGP_C3HHeJ_T0018821.1 MGP_C3HHeJ_G0015640.1 mouse_genomes_project 1 18069296 18081117 - Pkhd1 protein_coding processed_transcript MGP_C3HHeJ_T0101092.1 MGP_C3HHeJ_G0039280.1 mouse_genomes_project 1 160791433 160799896 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101093.1 MGP_C3HHeJ_G0039280.1 mouse_genomes_project 1 160791721 160799893 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101094.1 MGP_C3HHeJ_G0039280.1 mouse_genomes_project 1 160792059 160792353 + transcribed_processed_pseudogene TEC MGP_C3HHeJ_T0101095.1 MGP_C3HHeJ_G0039280.1 mouse_genomes_project 1 160799561 160799812 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0012225.1 MGP_C3HHeJ_G0010329.1 mouse_genomes_project 1 173239047 173239495 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000723.1 MGP_C3HHeJ_G0000668.1 mouse_genomes_project 1 181680315 181681847 - TEC TEC MGP_C3HHeJ_T0002874.1 MGP_C3HHeJ_G0002704.1 mouse_genomes_project 1 169185923 169187300 - Gm38325 antisense antisense MGP_C3HHeJ_T0011759.1 MGP_C3HHeJ_G0009863.1 mouse_genomes_project 1 2151507 2153095 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002841.1 MGP_C3HHeJ_G0002679.1 mouse_genomes_project 1 149829047 149867109 - Gm15584 antisense antisense MGP_C3HHeJ_T0012137.1 MGP_C3HHeJ_G0010241.1 mouse_genomes_project 1 131015653 131016075 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019754.1 MGP_C3HHeJ_G0015823.1 mouse_genomes_project 1 58078432 58123330 - MGP_C3HHeJ_P0019754 Orc2 protein_coding protein_coding MGP_C3HHeJ_T0019755.1 MGP_C3HHeJ_G0015823.1 mouse_genomes_project 1 58079865 58119637 - MGP_C3HHeJ_P0019755 Orc2 protein_coding protein_coding MGP_C3HHeJ_T0019756.1 MGP_C3HHeJ_G0015823.1 mouse_genomes_project 1 58097499 58098638 - Orc2 protein_coding retained_intron MGP_C3HHeJ_T0019757.1 MGP_C3HHeJ_G0015823.1 mouse_genomes_project 1 58101407 58123146 - MGP_C3HHeJ_P0019757 Orc2 protein_coding protein_coding MGP_C3HHeJ_T0019758.1 MGP_C3HHeJ_G0015823.1 mouse_genomes_project 1 58117801 58123176 - MGP_C3HHeJ_P0019758 Orc2 protein_coding protein_coding MGP_C3HHeJ_T0022395.1 MGP_C3HHeJ_G0016358.1 mouse_genomes_project 1 156013433 156042231 + MGP_C3HHeJ_P0022395 protein_coding unknown_likely_coding MGP_C3HHeJ_T0022396.1 MGP_C3HHeJ_G0016358.1 mouse_genomes_project 1 156013948 156030429 + MGP_C3HHeJ_P0022396 protein_coding protein_coding MGP_C3HHeJ_T0022397.1 MGP_C3HHeJ_G0016358.1 mouse_genomes_project 1 156014089 156018866 + protein_coding retained_intron MGP_C3HHeJ_T0022398.1 MGP_C3HHeJ_G0016358.1 mouse_genomes_project 1 156017117 156030428 + protein_coding retained_intron MGP_C3HHeJ_T0022399.1 MGP_C3HHeJ_G0016358.1 mouse_genomes_project 1 156029705 156030621 + protein_coding retained_intron MGP_C3HHeJ_T0101499.1 MGP_C3HHeJ_G0039489.1 mouse_genomes_project 1 63830381 63848404 + unitary_pseudogene unitary_pseudogene MGP_C3HHeJ_T0009475.1 MGP_C3HHeJ_G0007608.1 mouse_genomes_project 1 190480449 190480561 + Mir215 miRNA miRNA MGP_C3HHeJ_T0011960.1 MGP_C3HHeJ_G0010064.1 mouse_genomes_project 1 59923973 59925706 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016865.1 MGP_C3HHeJ_G0014887.1 mouse_genomes_project 1 182112014 182114337 + Gm29856 processed_transcript processed_transcript MGP_C3HHeJ_T0016866.1 MGP_C3HHeJ_G0014887.1 mouse_genomes_project 1 182113315 182114338 + Gm29856 processed_transcript processed_transcript MGP_C3HHeJ_T0099823.1 MGP_C3HHeJ_G0038017.1 mouse_genomes_project 1 11011069 11011200 - Gm26273 snoRNA snoRNA MGP_C3HHeJ_T0011846.1 MGP_C3HHeJ_G0009950.1 mouse_genomes_project 1 26845042 26845349 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012103.1 MGP_C3HHeJ_G0010207.1 mouse_genomes_project 1 118626990 118627385 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020192.1 MGP_C3HHeJ_G0015905.1 mouse_genomes_project 1 73081942 73112447 + MGP_C3HHeJ_P0020192 Igfbp2 protein_coding protein_coding MGP_C3HHeJ_T0020193.1 MGP_C3HHeJ_G0015905.1 mouse_genomes_project 1 73108651 73112101 + Igfbp2 protein_coding retained_intron MGP_C3HHeJ_T0101567.1 MGP_C3HHeJ_G0039533.1 mouse_genomes_project 1 93719447 93719630 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0019522.1 MGP_C3HHeJ_G0015779.1 mouse_genomes_project 1 51690585 51735849 - MGP_C3HHeJ_P0019522 Nab1 protein_coding protein_coding MGP_C3HHeJ_T0019523.1 MGP_C3HHeJ_G0015779.1 mouse_genomes_project 1 51690585 51735470 - MGP_C3HHeJ_P0019523 Nab1 protein_coding protein_coding MGP_C3HHeJ_T0019524.1 MGP_C3HHeJ_G0015779.1 mouse_genomes_project 1 51692511 51725884 - MGP_C3HHeJ_P0019524 Nab1 protein_coding protein_coding MGP_C3HHeJ_T0019525.1 MGP_C3HHeJ_G0015779.1 mouse_genomes_project 1 51692534 51700353 - Nab1 protein_coding retained_intron MGP_C3HHeJ_T0019526.1 MGP_C3HHeJ_G0015779.1 mouse_genomes_project 1 51725457 51735485 - Nab1 protein_coding processed_transcript MGP_C3HHeJ_T0097966.1 MGP_C3HHeJ_G0036178.1 mouse_genomes_project 1 140694725 140694845 - Gm23782 rRNA rRNA MGP_C3HHeJ_T0012110.1 MGP_C3HHeJ_G0010214.1 mouse_genomes_project 1 121164546 121165526 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098672.1 MGP_C3HHeJ_G0036866.1 mouse_genomes_project 1 176024280 176024387 - Gm22950 snRNA snRNA MGP_C3HHeJ_T0002863.1 MGP_C3HHeJ_G0002697.1 mouse_genomes_project 1 165561934 165619941 + Gm38304 antisense antisense MGP_C3HHeJ_T0011917.1 MGP_C3HHeJ_G0010021.1 mouse_genomes_project 1 47410077 47411063 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012017.1 MGP_C3HHeJ_G0010121.1 mouse_genomes_project 1 80530848 80531112 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000454.1 MGP_C3HHeJ_G0000401.1 mouse_genomes_project 1 59717421 59722825 + TEC TEC MGP_C3HHeJ_T0005662.1 MGP_C3HHeJ_G0004746.1 mouse_genomes_project 1 56080349 56082402 + Gm28240 lincRNA lincRNA MGP_C3HHeJ_T0005571.1 MGP_C3HHeJ_G0004682.1 mouse_genomes_project 1 6751936 6753352 - Gm29520 lincRNA lincRNA MGP_C3HHeJ_T0023800.1 MGP_C3HHeJ_G0016668.1 mouse_genomes_project 1 189113371 189114643 - 1700056E22Rik protein_coding antisense MGP_C3HHeJ_T0023801.1 MGP_C3HHeJ_G0016668.1 mouse_genomes_project 1 189113373 189114340 - MGP_C3HHeJ_P0023801 1700056E22Rik protein_coding protein_coding MGP_C3HHeJ_T0011756.1 MGP_C3HHeJ_G0009860.1 mouse_genomes_project 1 1803535 1804166 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009411.1 MGP_C3HHeJ_G0007544.1 mouse_genomes_project 1 67684501 67684579 + Gm22548 miRNA miRNA MGP_C3HHeJ_T0005945.1 MGP_C3HHeJ_G0004971.1 mouse_genomes_project 1 188423988 188427295 - lincRNA lincRNA MGP_C3HHeJ_T0098620.1 MGP_C3HHeJ_G0036814.1 mouse_genomes_project 1 63486871 63486974 - Gm22281 snRNA snRNA MGP_C3HHeJ_T0022604.1 MGP_C3HHeJ_G0016395.1 mouse_genomes_project 1 160188259 160208580 + MGP_C3HHeJ_P0022604 Angptl1 protein_coding protein_coding MGP_C3HHeJ_T0022605.1 MGP_C3HHeJ_G0016395.1 mouse_genomes_project 1 160188645 160195285 + MGP_C3HHeJ_P0022605 Angptl1 protein_coding protein_coding MGP_C3HHeJ_T0002921.1 MGP_C3HHeJ_G0002744.1 mouse_genomes_project 1 195503998 195504962 + Gm28172 antisense antisense MGP_C3HHeJ_T0009412.1 MGP_C3HHeJ_G0007545.1 mouse_genomes_project 1 74154903 74155002 - Mir6351 miRNA miRNA MGP_C3HHeJ_T0005841.1 MGP_C3HHeJ_G0004891.1 mouse_genomes_project 1 139237389 139239825 - 4933409D19Rik lincRNA lincRNA MGP_C3HHeJ_T0005927.1 MGP_C3HHeJ_G0004959.1 mouse_genomes_project 1 185164910 185175872 - Gm37336 lincRNA lincRNA MGP_C3HHeJ_T0005928.1 MGP_C3HHeJ_G0004959.1 mouse_genomes_project 1 185175469 185175937 - Gm37336 lincRNA lincRNA MGP_C3HHeJ_T0019593.1 MGP_C3HHeJ_G0015794.1 mouse_genomes_project 1 53692986 53714883 + Ccdc150 protein_coding retained_intron MGP_C3HHeJ_T0019594.1 MGP_C3HHeJ_G0015794.1 mouse_genomes_project 1 53692986 53829899 + MGP_C3HHeJ_P0019594 Ccdc150 protein_coding protein_coding MGP_C3HHeJ_T0019595.1 MGP_C3HHeJ_G0015794.1 mouse_genomes_project 1 53693025 53829642 + MGP_C3HHeJ_P0019595 Ccdc150 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019596.1 MGP_C3HHeJ_G0015794.1 mouse_genomes_project 1 53775257 53829780 + Ccdc150 protein_coding processed_transcript MGP_C3HHeJ_T0019597.1 MGP_C3HHeJ_G0015794.1 mouse_genomes_project 1 53816046 53829775 + Ccdc150 protein_coding retained_intron MGP_C3HHeJ_T0009429.1 MGP_C3HHeJ_G0007562.1 mouse_genomes_project 1 93565789 93565849 - Mir6900 miRNA miRNA MGP_C3HHeJ_T0012221.1 MGP_C3HHeJ_G0010325.1 mouse_genomes_project 1 170494634 170497061 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000400.1 MGP_C3HHeJ_G0000348.1 mouse_genomes_project 1 30820797 30823267 + TEC TEC MGP_C3HHeJ_T0020144.1 MGP_C3HHeJ_G0015894.1 mouse_genomes_project 1 71442370 71617807 - MGP_C3HHeJ_P0020144 Abca12 protein_coding protein_coding MGP_C3HHeJ_T0020145.1 MGP_C3HHeJ_G0015894.1 mouse_genomes_project 1 71486051 71503112 - Abca12 protein_coding retained_intron MGP_C3HHeJ_T0020146.1 MGP_C3HHeJ_G0015894.1 mouse_genomes_project 1 71509311 71617807 - Abca12 protein_coding retained_intron MGP_C3HHeJ_T0020147.1 MGP_C3HHeJ_G0015894.1 mouse_genomes_project 1 71532146 71535315 - Abca12 protein_coding retained_intron MGP_C3HHeJ_T0020148.1 MGP_C3HHeJ_G0015894.1 mouse_genomes_project 1 71561137 71617793 - Abca12 protein_coding retained_intron MGP_C3HHeJ_T0024117.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200601372 200636765 - MGP_C3HHeJ_P0024117 Cr1l protein_coding protein_coding MGP_C3HHeJ_T0024118.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200602649 200636744 - MGP_C3HHeJ_P0024118 Cr1l protein_coding protein_coding MGP_C3HHeJ_T0024119.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200609140 200612815 - Cr1l protein_coding retained_intron MGP_C3HHeJ_T0024120.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200609236 200636982 - MGP_C3HHeJ_P0024120 Cr1l protein_coding protein_coding MGP_C3HHeJ_T0024121.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200609242 200623062 - MGP_C3HHeJ_P0024121 Cr1l protein_coding protein_coding MGP_C3HHeJ_T0024122.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200620073 200634883 - Cr1l protein_coding retained_intron MGP_C3HHeJ_T0024123.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200620200 200637007 - MGP_C3HHeJ_P0024123 Cr1l protein_coding protein_coding MGP_C3HHeJ_T0024124.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200631335 200636955 - Cr1l protein_coding retained_intron MGP_C3HHeJ_T0024125.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200634614 200636751 - MGP_C3HHeJ_P0024125 Cr1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024126.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200635066 200636776 - Cr1l protein_coding retained_intron MGP_C3HHeJ_T0020945.1 MGP_C3HHeJ_G0016044.1 mouse_genomes_project 1 89026332 89119660 + protein_coding retained_intron MGP_C3HHeJ_T0020946.1 MGP_C3HHeJ_G0016044.1 mouse_genomes_project 1 89026332 89122337 + MGP_C3HHeJ_P0020946 protein_coding protein_coding MGP_C3HHeJ_T0020947.1 MGP_C3HHeJ_G0016044.1 mouse_genomes_project 1 89026398 89117572 + MGP_C3HHeJ_P0020947 protein_coding protein_coding MGP_C3HHeJ_T0020948.1 MGP_C3HHeJ_G0016044.1 mouse_genomes_project 1 89029942 89122337 + MGP_C3HHeJ_P0020948 protein_coding protein_coding MGP_C3HHeJ_T0098314.1 MGP_C3HHeJ_G0036526.1 mouse_genomes_project 1 51937487 51939978 - Gm29670 sense_intronic sense_intronic MGP_C3HHeJ_T0012177.1 MGP_C3HHeJ_G0010281.1 mouse_genomes_project 1 152124534 152126569 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005758.1 MGP_C3HHeJ_G0004821.1 mouse_genomes_project 1 91490139 91491250 - Gm28722 lincRNA lincRNA MGP_C3HHeJ_T0021091.1 MGP_C3HHeJ_G0016079.1 mouse_genomes_project 1 92890276 92937517 + MGP_C3HHeJ_P0021091 Twist2 protein_coding protein_coding MGP_C3HHeJ_T0021092.1 MGP_C3HHeJ_G0016079.1 mouse_genomes_project 1 92890285 92892806 + MGP_C3HHeJ_P0021092 Twist2 protein_coding protein_coding MGP_C3HHeJ_T0022191.1 MGP_C3HHeJ_G0016319.1 mouse_genomes_project 1 141694819 141796197 + MGP_C3HHeJ_P0022191 Dennd1b protein_coding protein_coding MGP_C3HHeJ_T0022192.1 MGP_C3HHeJ_G0016319.1 mouse_genomes_project 1 141695093 141903942 + MGP_C3HHeJ_P0022192 Dennd1b protein_coding protein_coding MGP_C3HHeJ_T0022193.1 MGP_C3HHeJ_G0016319.1 mouse_genomes_project 1 141695112 141818947 + MGP_C3HHeJ_P0022193 Dennd1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022194.1 MGP_C3HHeJ_G0016319.1 mouse_genomes_project 1 141695253 141906848 + MGP_C3HHeJ_P0022194 Dennd1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022195.1 MGP_C3HHeJ_G0016319.1 mouse_genomes_project 1 141699229 141903942 + MGP_C3HHeJ_P0022195 Dennd1b protein_coding protein_coding MGP_C3HHeJ_T0022196.1 MGP_C3HHeJ_G0016319.1 mouse_genomes_project 1 141786208 141788973 + Dennd1b protein_coding retained_intron MGP_C3HHeJ_T0022197.1 MGP_C3HHeJ_G0016319.1 mouse_genomes_project 1 141818942 141864447 + Dennd1b protein_coding retained_intron MGP_C3HHeJ_T0022198.1 MGP_C3HHeJ_G0016319.1 mouse_genomes_project 1 141854204 141903882 + Dennd1b protein_coding processed_transcript MGP_C3HHeJ_T0022199.1 MGP_C3HHeJ_G0016319.1 mouse_genomes_project 1 141861802 141901993 + Dennd1b protein_coding processed_transcript MGP_C3HHeJ_T0005911.1 MGP_C3HHeJ_G0004944.1 mouse_genomes_project 1 170711982 170734534 - Gm16701 lincRNA lincRNA MGP_C3HHeJ_T0000453.1 MGP_C3HHeJ_G0000400.1 mouse_genomes_project 1 59670755 59671476 - TEC TEC MGP_C3HHeJ_T0019389.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42749700 42766452 - MGP_C3HHeJ_P0019389 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019390.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42749703 42766499 - MGP_C3HHeJ_P0019390 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019391.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42749897 42766423 - MGP_C3HHeJ_P0019391 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019392.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42749897 42766404 - MGP_C3HHeJ_P0019392 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019393.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42749947 42766484 - MGP_C3HHeJ_P0019393 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019394.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42749948 42766502 - MGP_C3HHeJ_P0019394 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019395.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42749949 42765738 - MGP_C3HHeJ_P0019395 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019396.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42750116 42766494 - MGP_C3HHeJ_P0019396 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019397.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42750988 42766462 - MGP_C3HHeJ_P0019397 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019398.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42751104 42766074 - MGP_C3HHeJ_P0019398 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019399.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42751590 42766475 - MGP_C3HHeJ_P0019399 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019400.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42751596 42766498 - MGP_C3HHeJ_P0019400 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019401.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42751602 42764070 - MGP_C3HHeJ_P0019401 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0009392.1 MGP_C3HHeJ_G0007525.1 mouse_genomes_project 1 34610403 34610480 - Mir6898 miRNA miRNA MGP_C3HHeJ_T0098317.1 MGP_C3HHeJ_G0036529.1 mouse_genomes_project 1 69818900 69820776 - Gm28112 sense_intronic sense_intronic MGP_C3HHeJ_T0000479.1 MGP_C3HHeJ_G0000426.1 mouse_genomes_project 1 68725840 68727206 - TEC TEC MGP_C3HHeJ_T0012170.1 MGP_C3HHeJ_G0010274.1 mouse_genomes_project 1 149400517 149401118 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000769.1 MGP_C3HHeJ_G0000711.1 mouse_genomes_project 1 198683276 198685497 - TEC TEC MGP_C3HHeJ_T0000574.1 MGP_C3HHeJ_G0000521.1 mouse_genomes_project 1 126575387 126579052 - TEC TEC MGP_C3HHeJ_T0005946.1 MGP_C3HHeJ_G0004972.1 mouse_genomes_project 1 188525512 188525895 + Gm37986 lincRNA lincRNA MGP_C3HHeJ_T0021120.1 MGP_C3HHeJ_G0016086.1 mouse_genomes_project 1 93739501 93740592 + MGP_C3HHeJ_P0021120 Olfr1412 protein_coding protein_coding MGP_C3HHeJ_T0012052.1 MGP_C3HHeJ_G0010156.1 mouse_genomes_project 1 95669959 95671239 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099826.1 MGP_C3HHeJ_G0038020.1 mouse_genomes_project 1 13099950 13100082 + Gm25168 snoRNA snoRNA MGP_C3HHeJ_T0020918.1 MGP_C3HHeJ_G0016037.1 mouse_genomes_project 1 88701359 88798698 + MGP_C3HHeJ_P0020918 Dgkd protein_coding protein_coding MGP_C3HHeJ_T0020919.1 MGP_C3HHeJ_G0016037.1 mouse_genomes_project 1 88729105 88766288 + Dgkd protein_coding retained_intron MGP_C3HHeJ_T0020920.1 MGP_C3HHeJ_G0016037.1 mouse_genomes_project 1 88768441 88772515 + Dgkd protein_coding retained_intron MGP_C3HHeJ_T0020921.1 MGP_C3HHeJ_G0016037.1 mouse_genomes_project 1 88782525 88792461 + MGP_C3HHeJ_P0020921 Dgkd protein_coding protein_coding MGP_C3HHeJ_T0020922.1 MGP_C3HHeJ_G0016037.1 mouse_genomes_project 1 88788604 88799388 + MGP_C3HHeJ_P0020922 Dgkd protein_coding protein_coding MGP_C3HHeJ_T0020923.1 MGP_C3HHeJ_G0016037.1 mouse_genomes_project 1 88789490 88794473 + Dgkd protein_coding retained_intron MGP_C3HHeJ_T0020924.1 MGP_C3HHeJ_G0016037.1 mouse_genomes_project 1 88792592 88799386 + MGP_C3HHeJ_P0020924 Dgkd protein_coding protein_coding MGP_C3HHeJ_T0011770.1 MGP_C3HHeJ_G0009874.1 mouse_genomes_project 1 4265413 4265801 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012159.1 MGP_C3HHeJ_G0010263.1 mouse_genomes_project 1 144139770 144140332 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011936.1 MGP_C3HHeJ_G0010040.1 mouse_genomes_project 1 51990117 51990528 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000735.1 MGP_C3HHeJ_G0000679.1 mouse_genomes_project 1 185340549 185341421 + TEC TEC MGP_C3HHeJ_T0021865.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135720426 135780254 + MGP_C3HHeJ_P0021865 Plekha6 protein_coding protein_coding MGP_C3HHeJ_T0021866.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135731685 135741405 + MGP_C3HHeJ_P0021866 Plekha6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0021867.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135731685 135775854 + MGP_C3HHeJ_P0021867 Plekha6 protein_coding protein_coding MGP_C3HHeJ_T0021868.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135733687 135778035 + MGP_C3HHeJ_P0021868 Plekha6 protein_coding protein_coding MGP_C3HHeJ_T0021869.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135744098 135746977 + Plekha6 protein_coding processed_transcript MGP_C3HHeJ_T0021870.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135744777 135775854 + MGP_C3HHeJ_P0021870 Plekha6 protein_coding protein_coding MGP_C3HHeJ_T0021871.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135748890 135756454 + MGP_C3HHeJ_P0021871 Plekha6 protein_coding protein_coding MGP_C3HHeJ_T0021872.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135748896 135759598 + MGP_C3HHeJ_P0021872 Plekha6 protein_coding protein_coding MGP_C3HHeJ_T0021873.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135768568 135771045 + Plekha6 protein_coding retained_intron MGP_C3HHeJ_T0021874.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135774769 135778436 + Plekha6 protein_coding retained_intron MGP_C3HHeJ_T0020775.1 MGP_C3HHeJ_G0016009.1 mouse_genomes_project 1 86827970 86861177 + MGP_C3HHeJ_P0020775 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099885.1 MGP_C3HHeJ_G0038079.1 mouse_genomes_project 1 136085567 136085700 + Gm23939 snoRNA snoRNA MGP_C3HHeJ_T0011975.1 MGP_C3HHeJ_G0010079.1 mouse_genomes_project 1 61938711 61938970 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101580.1 MGP_C3HHeJ_G0039546.1 mouse_genomes_project 1 119751008 119767987 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098594.1 MGP_C3HHeJ_G0036788.1 mouse_genomes_project 1 1595311 1595418 + Gm22307 snRNA snRNA MGP_C3HHeJ_T0022586.1 MGP_C3HHeJ_G0016393.1 mouse_genomes_project 1 160015186 160059202 - MGP_C3HHeJ_P0022586 Fam20b protein_coding protein_coding MGP_C3HHeJ_T0022587.1 MGP_C3HHeJ_G0016393.1 mouse_genomes_project 1 160015225 160059216 - MGP_C3HHeJ_P0022587 Fam20b protein_coding protein_coding MGP_C3HHeJ_T0022588.1 MGP_C3HHeJ_G0016393.1 mouse_genomes_project 1 160023549 160038959 - Fam20b protein_coding retained_intron MGP_C3HHeJ_T0022589.1 MGP_C3HHeJ_G0016393.1 mouse_genomes_project 1 160038804 160043914 - Fam20b protein_coding processed_transcript MGP_C3HHeJ_T0022590.1 MGP_C3HHeJ_G0016393.1 mouse_genomes_project 1 160041741 160057088 - Fam20b protein_coding retained_intron MGP_C3HHeJ_T0011752.1 MGP_C3HHeJ_G0009856.1 mouse_genomes_project 1 1601725 1602175 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021935.1 MGP_C3HHeJ_G0016266.1 mouse_genomes_project 1 136588210 136592162 - MGP_C3HHeJ_P0021935 Btg2 protein_coding protein_coding MGP_C3HHeJ_T0000337.1 MGP_C3HHeJ_G0000287.1 mouse_genomes_project 1 5719235 5725251 - TEC TEC MGP_C3HHeJ_T0011996.1 MGP_C3HHeJ_G0010100.1 mouse_genomes_project 1 66946828 66948468 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098599.1 MGP_C3HHeJ_G0036793.1 mouse_genomes_project 1 7696789 7696896 - Gm25253 snRNA snRNA MGP_C3HHeJ_T0002783.1 MGP_C3HHeJ_G0002635.1 mouse_genomes_project 1 88074332 88075026 - Efhd1os antisense antisense MGP_C3HHeJ_T0012059.1 MGP_C3HHeJ_G0010163.1 mouse_genomes_project 1 101069991 101071837 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023100.1 MGP_C3HHeJ_G0016500.1 mouse_genomes_project 1 174783820 174790400 - MGP_C3HHeJ_P0023100 Fcrlb protein_coding protein_coding MGP_C3HHeJ_T0011878.1 MGP_C3HHeJ_G0009982.1 mouse_genomes_project 1 33145016 33147157 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005941.1 MGP_C3HHeJ_G0004968.1 mouse_genomes_project 1 187394861 187410205 + 1700047M11Rik lincRNA lincRNA MGP_C3HHeJ_T0005942.1 MGP_C3HHeJ_G0004968.1 mouse_genomes_project 1 187407713 187410167 + 1700047M11Rik lincRNA lincRNA MGP_C3HHeJ_T0022200.1 MGP_C3HHeJ_G0016320.1 mouse_genomes_project 1 141924856 142116640 - MGP_C3HHeJ_P0022200 Crb1 protein_coding protein_coding MGP_C3HHeJ_T0022201.1 MGP_C3HHeJ_G0016320.1 mouse_genomes_project 1 141926044 141930061 - Crb1 protein_coding retained_intron MGP_C3HHeJ_T0022202.1 MGP_C3HHeJ_G0016320.1 mouse_genomes_project 1 141957356 142116663 - MGP_C3HHeJ_P0022202 Crb1 protein_coding protein_coding MGP_C3HHeJ_T0022203.1 MGP_C3HHeJ_G0016320.1 mouse_genomes_project 1 141973315 141982947 - Crb1 protein_coding retained_intron MGP_C3HHeJ_T0022204.1 MGP_C3HHeJ_G0016320.1 mouse_genomes_project 1 141975360 142116604 - MGP_C3HHeJ_P0022204 Crb1 protein_coding protein_coding MGP_C3HHeJ_T0022205.1 MGP_C3HHeJ_G0016320.1 mouse_genomes_project 1 141976422 142065439 - MGP_C3HHeJ_P0022205 Crb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022206.1 MGP_C3HHeJ_G0016320.1 mouse_genomes_project 1 141976437 142065459 - MGP_C3HHeJ_P0022206 Crb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012049.1 MGP_C3HHeJ_G0010153.1 mouse_genomes_project 1 94480047 94480593 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011797.1 MGP_C3HHeJ_G0009901.1 mouse_genomes_project 1 9296078 9296948 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019598.1 MGP_C3HHeJ_G0015795.1 mouse_genomes_project 1 53851845 53888979 - MGP_C3HHeJ_P0019598 Gtf3c3 protein_coding protein_coding MGP_C3HHeJ_T0019599.1 MGP_C3HHeJ_G0015795.1 mouse_genomes_project 1 53869888 53873794 - Gtf3c3 protein_coding retained_intron MGP_C3HHeJ_T0019600.1 MGP_C3HHeJ_G0015795.1 mouse_genomes_project 1 53877043 53878651 - Gtf3c3 protein_coding retained_intron MGP_C3HHeJ_T0023975.1 MGP_C3HHeJ_G0016703.1 mouse_genomes_project 1 196697983 196711134 - MGP_C3HHeJ_P0023975 Nenf protein_coding protein_coding MGP_C3HHeJ_T0099901.1 MGP_C3HHeJ_G0038095.1 mouse_genomes_project 1 164589638 164589699 + Gm23212 snoRNA snoRNA MGP_C3HHeJ_T0000414.1 MGP_C3HHeJ_G0000361.1 mouse_genomes_project 1 34743130 34745290 + TEC TEC MGP_C3HHeJ_T0005798.1 MGP_C3HHeJ_G0004855.1 mouse_genomes_project 1 121060314 121061689 + Gm26831 lincRNA lincRNA MGP_C3HHeJ_T0011860.1 MGP_C3HHeJ_G0009964.1 mouse_genomes_project 1 29796338 29797171 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000642.1 MGP_C3HHeJ_G0000587.1 mouse_genomes_project 1 150342625 150343802 - TEC TEC MGP_C3HHeJ_T0011803.1 MGP_C3HHeJ_G0009907.1 mouse_genomes_project 1 13102253 13102800 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016797.1 MGP_C3HHeJ_G0014869.1 mouse_genomes_project 1 134381062 134435102 + Gm29103 processed_transcript processed_transcript MGP_C3HHeJ_T0097970.1 MGP_C3HHeJ_G0036182.1 mouse_genomes_project 1 157625659 157625779 - n-R5s220 rRNA rRNA MGP_C3HHeJ_T0005762.1 MGP_C3HHeJ_G0004825.1 mouse_genomes_project 1 92480167 92481318 - 1700020N18Rik lincRNA lincRNA MGP_C3HHeJ_T0000599.1 MGP_C3HHeJ_G0000546.1 mouse_genomes_project 1 134347629 134348136 - TEC TEC MGP_C3HHeJ_T0097974.1 MGP_C3HHeJ_G0036186.1 mouse_genomes_project 1 191303617 191303723 + Gm23821 rRNA rRNA MGP_C3HHeJ_T0002813.1 MGP_C3HHeJ_G0002658.1 mouse_genomes_project 1 133116951 133118117 - Gm28857 antisense antisense MGP_C3HHeJ_T0022045.1 MGP_C3HHeJ_G0016292.1 mouse_genomes_project 1 137950402 137954537 - MGP_C3HHeJ_P0022045 Shisa4 protein_coding protein_coding MGP_C3HHeJ_T0022046.1 MGP_C3HHeJ_G0016292.1 mouse_genomes_project 1 137950405 137952799 - Shisa4 protein_coding retained_intron MGP_C3HHeJ_T0022047.1 MGP_C3HHeJ_G0016292.1 mouse_genomes_project 1 137953187 137954377 - Shisa4 protein_coding retained_intron MGP_C3HHeJ_T0021350.1 MGP_C3HHeJ_G0016135.1 mouse_genomes_project 1 107433344 107499868 + MGP_C3HHeJ_P0021350 Tnfrsf11a protein_coding protein_coding MGP_C3HHeJ_T0021351.1 MGP_C3HHeJ_G0016135.1 mouse_genomes_project 1 107433376 107468315 + Tnfrsf11a protein_coding retained_intron MGP_C3HHeJ_T0021352.1 MGP_C3HHeJ_G0016135.1 mouse_genomes_project 1 107473765 107480642 + Tnfrsf11a protein_coding retained_intron MGP_C3HHeJ_T0002861.1 MGP_C3HHeJ_G0002696.1 mouse_genomes_project 1 164715487 164720249 - 4930469G21Rik antisense antisense MGP_C3HHeJ_T0002862.1 MGP_C3HHeJ_G0002696.1 mouse_genomes_project 1 164717772 164720249 - 4930469G21Rik antisense antisense MGP_C3HHeJ_T0021469.1 MGP_C3HHeJ_G0016164.1 mouse_genomes_project 1 121493320 121527649 - MGP_C3HHeJ_P0021469 Ralb protein_coding protein_coding MGP_C3HHeJ_T0021470.1 MGP_C3HHeJ_G0016164.1 mouse_genomes_project 1 121495159 121501080 - MGP_C3HHeJ_P0021470 Ralb protein_coding protein_coding MGP_C3HHeJ_T0021471.1 MGP_C3HHeJ_G0016164.1 mouse_genomes_project 1 121504133 121527649 - Ralb protein_coding retained_intron MGP_C3HHeJ_T0000726.1 MGP_C3HHeJ_G0000671.1 mouse_genomes_project 1 181808805 181811570 - TEC TEC MGP_C3HHeJ_T0019636.1 MGP_C3HHeJ_G0015801.1 mouse_genomes_project 1 54575352 54578528 + MGP_C3HHeJ_P0019636 Hspe1 protein_coding protein_coding MGP_C3HHeJ_T0019637.1 MGP_C3HHeJ_G0015801.1 mouse_genomes_project 1 54575534 54577136 + Hspe1 protein_coding retained_intron MGP_C3HHeJ_T0021046.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92369578 92394335 + MGP_C3HHeJ_P0021046 Scly protein_coding protein_coding MGP_C3HHeJ_T0021047.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92369600 92374777 + Scly protein_coding retained_intron MGP_C3HHeJ_T0021048.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92369608 92381542 + MGP_C3HHeJ_P0021048 Scly protein_coding protein_coding MGP_C3HHeJ_T0021049.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92369609 92382650 + MGP_C3HHeJ_P0021049 Scly protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021050.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92369610 92384129 + Scly protein_coding retained_intron MGP_C3HHeJ_T0021051.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92369644 92381508 + MGP_C3HHeJ_P0021051 Scly protein_coding protein_coding MGP_C3HHeJ_T0021052.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92369647 92381614 + MGP_C3HHeJ_P0021052 Scly protein_coding protein_coding MGP_C3HHeJ_T0021053.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92369667 92376702 + Scly protein_coding processed_transcript MGP_C3HHeJ_T0021054.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92371196 92374135 + MGP_C3HHeJ_P0021054 Scly protein_coding protein_coding MGP_C3HHeJ_T0021055.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92374062 92382671 + MGP_C3HHeJ_P0021055 Scly protein_coding protein_coding MGP_C3HHeJ_T0000478.1 MGP_C3HHeJ_G0000425.1 mouse_genomes_project 1 68689820 68691884 - TEC TEC MGP_C3HHeJ_T0000516.1 MGP_C3HHeJ_G0000463.1 mouse_genomes_project 1 86815138 86818099 + TEC TEC MGP_C3HHeJ_T0000644.1 MGP_C3HHeJ_G0000589.1 mouse_genomes_project 1 152507619 152509075 - TEC TEC MGP_C3HHeJ_T0019994.1 MGP_C3HHeJ_G0015863.1 mouse_genomes_project 1 63678247 63692483 - MGP_C3HHeJ_P0019994 4933402D24Rik protein_coding protein_coding MGP_C3HHeJ_T0021966.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136928946 136931326 + Cyb5r1 protein_coding processed_transcript MGP_C3HHeJ_T0021967.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136929116 136935074 + MGP_C3HHeJ_P0021967 Cyb5r1 protein_coding protein_coding MGP_C3HHeJ_T0021968.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136929116 136935070 + MGP_C3HHeJ_P0021968 Cyb5r1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021969.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136929330 136930938 + Cyb5r1 protein_coding processed_transcript MGP_C3HHeJ_T0021970.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136929338 136930930 + Cyb5r1 protein_coding processed_transcript MGP_C3HHeJ_T0021971.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136929339 136933001 + MGP_C3HHeJ_P0021971 Cyb5r1 protein_coding protein_coding MGP_C3HHeJ_T0021972.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136929355 136932202 + Cyb5r1 protein_coding retained_intron MGP_C3HHeJ_T0021973.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136929363 136933335 + Cyb5r1 protein_coding retained_intron MGP_C3HHeJ_T0021974.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136929648 136934305 + MGP_C3HHeJ_P0021974 Cyb5r1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021975.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136929648 136931003 + MGP_C3HHeJ_P0021975 Cyb5r1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0016743.1 MGP_C3HHeJ_G0014847.1 mouse_genomes_project 1 1560929 1563757 + Gm37587 processed_transcript retained_intron MGP_C3HHeJ_T0016744.1 MGP_C3HHeJ_G0014847.1 mouse_genomes_project 1 1561852 1563939 + Gm37587 processed_transcript antisense MGP_C3HHeJ_T0019829.1 MGP_C3HHeJ_G0015836.1 mouse_genomes_project 1 59237958 59242490 + MGP_C3HHeJ_P0019829 Fzd7 protein_coding protein_coding MGP_C3HHeJ_T0005753.1 MGP_C3HHeJ_G0004816.1 mouse_genomes_project 1 90290366 90348370 - Gm28342 lincRNA lincRNA MGP_C3HHeJ_T0022363.1 MGP_C3HHeJ_G0016350.1 mouse_genomes_project 1 154742710 154826265 + MGP_C3HHeJ_P0022363 Fam129a protein_coding protein_coding MGP_C3HHeJ_T0022364.1 MGP_C3HHeJ_G0016350.1 mouse_genomes_project 1 154742897 154905152 + MGP_C3HHeJ_P0022364 Fam129a protein_coding protein_coding MGP_C3HHeJ_T0022365.1 MGP_C3HHeJ_G0016350.1 mouse_genomes_project 1 154742976 154902555 + MGP_C3HHeJ_P0022365 Fam129a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022366.1 MGP_C3HHeJ_G0016350.1 mouse_genomes_project 1 154743020 154872378 + MGP_C3HHeJ_P0022366 Fam129a protein_coding protein_coding MGP_C3HHeJ_T0022367.1 MGP_C3HHeJ_G0016350.1 mouse_genomes_project 1 154858802 154902555 + Fam129a protein_coding processed_transcript MGP_C3HHeJ_T0098566.1 MGP_C3HHeJ_G0036765.1 mouse_genomes_project 1 41298588 41348778 + Gm20646 sense_overlapping sense_overlapping MGP_C3HHeJ_T0098567.1 MGP_C3HHeJ_G0036765.1 mouse_genomes_project 1 41298588 41352601 + Gm20646 sense_overlapping sense_overlapping MGP_C3HHeJ_T0022368.1 MGP_C3HHeJ_G0016351.1 mouse_genomes_project 1 154939954 155002677 + MGP_C3HHeJ_P0022368 Edem3 protein_coding protein_coding MGP_C3HHeJ_T0022369.1 MGP_C3HHeJ_G0016351.1 mouse_genomes_project 1 154939957 155005793 + MGP_C3HHeJ_P0022369 Edem3 protein_coding protein_coding MGP_C3HHeJ_T0022370.1 MGP_C3HHeJ_G0016351.1 mouse_genomes_project 1 154940043 155002721 + MGP_C3HHeJ_P0022370 Edem3 protein_coding protein_coding MGP_C3HHeJ_T0022371.1 MGP_C3HHeJ_G0016351.1 mouse_genomes_project 1 154940043 155002721 + MGP_C3HHeJ_P0022371 Edem3 protein_coding protein_coding MGP_C3HHeJ_T0011895.1 MGP_C3HHeJ_G0009999.1 mouse_genomes_project 1 42545421 42545966 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000382.1 MGP_C3HHeJ_G0000330.1 mouse_genomes_project 1 23303452 23306394 - TEC TEC MGP_C3HHeJ_T0018832.1 MGP_C3HHeJ_G0015644.1 mouse_genomes_project 1 18362628 18410200 + MGP_C3HHeJ_P0018832 Paqr8 protein_coding protein_coding MGP_C3HHeJ_T0018833.1 MGP_C3HHeJ_G0015644.1 mouse_genomes_project 1 18389790 18409603 + MGP_C3HHeJ_P0018833 Paqr8 protein_coding protein_coding MGP_C3HHeJ_T0018834.1 MGP_C3HHeJ_G0015644.1 mouse_genomes_project 1 18389824 18406300 + MGP_C3HHeJ_P0018834 Paqr8 protein_coding protein_coding MGP_C3HHeJ_T0018835.1 MGP_C3HHeJ_G0015644.1 mouse_genomes_project 1 18393606 18406307 + MGP_C3HHeJ_P0018835 Paqr8 protein_coding protein_coding MGP_C3HHeJ_T0022579.1 MGP_C3HHeJ_G0016392.1 mouse_genomes_project 1 159988867 160011313 - MGP_C3HHeJ_P0022579 Tor3a protein_coding protein_coding MGP_C3HHeJ_T0022580.1 MGP_C3HHeJ_G0016392.1 mouse_genomes_project 1 159988867 160011313 - MGP_C3HHeJ_P0022580 Tor3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022581.1 MGP_C3HHeJ_G0016392.1 mouse_genomes_project 1 159988867 160011282 - MGP_C3HHeJ_P0022581 Tor3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022582.1 MGP_C3HHeJ_G0016392.1 mouse_genomes_project 1 159990291 160011271 - MGP_C3HHeJ_P0022582 Tor3a protein_coding protein_coding MGP_C3HHeJ_T0022583.1 MGP_C3HHeJ_G0016392.1 mouse_genomes_project 1 159990920 159993661 - Tor3a protein_coding processed_transcript MGP_C3HHeJ_T0022584.1 MGP_C3HHeJ_G0016392.1 mouse_genomes_project 1 159997373 160003714 - Tor3a protein_coding processed_transcript MGP_C3HHeJ_T0022585.1 MGP_C3HHeJ_G0016392.1 mouse_genomes_project 1 160003675 160011292 - MGP_C3HHeJ_P0022585 Tor3a protein_coding protein_coding MGP_C3HHeJ_T0019254.1 MGP_C3HHeJ_G0015724.1 mouse_genomes_project 1 37336424 37347532 + MGP_C3HHeJ_P0019254 Nms protein_coding protein_coding MGP_C3HHeJ_T0019255.1 MGP_C3HHeJ_G0015724.1 mouse_genomes_project 1 37336478 37345899 + MGP_C3HHeJ_P0019255 Nms protein_coding protein_coding MGP_C3HHeJ_T0020744.1 MGP_C3HHeJ_G0016002.1 mouse_genomes_project 1 86583460 86597886 + MGP_C3HHeJ_P0020744 Itm2c protein_coding protein_coding MGP_C3HHeJ_T0020745.1 MGP_C3HHeJ_G0016002.1 mouse_genomes_project 1 86583798 86597900 + MGP_C3HHeJ_P0020745 Itm2c protein_coding protein_coding MGP_C3HHeJ_T0020746.1 MGP_C3HHeJ_G0016002.1 mouse_genomes_project 1 86595371 86597002 + Itm2c protein_coding retained_intron MGP_C3HHeJ_T0098671.1 MGP_C3HHeJ_G0036865.1 mouse_genomes_project 1 176023052 176023107 - Gm26412 snRNA snRNA MGP_C3HHeJ_T0022031.1 MGP_C3HHeJ_G0016289.1 mouse_genomes_project 1 137838193 137859389 - MGP_C3HHeJ_P0022031 Rnpep protein_coding protein_coding MGP_C3HHeJ_T0022032.1 MGP_C3HHeJ_G0016289.1 mouse_genomes_project 1 137838193 137859389 - MGP_C3HHeJ_P0022032 Rnpep protein_coding protein_coding MGP_C3HHeJ_T0022033.1 MGP_C3HHeJ_G0016289.1 mouse_genomes_project 1 137840686 137842897 - Rnpep protein_coding retained_intron MGP_C3HHeJ_T0022034.1 MGP_C3HHeJ_G0016289.1 mouse_genomes_project 1 137842523 137846947 - Rnpep protein_coding processed_transcript MGP_C3HHeJ_T0022035.1 MGP_C3HHeJ_G0016289.1 mouse_genomes_project 1 137846858 137850056 - Rnpep protein_coding processed_transcript MGP_C3HHeJ_T0022036.1 MGP_C3HHeJ_G0016289.1 mouse_genomes_project 1 137846860 137848242 - Rnpep protein_coding retained_intron MGP_C3HHeJ_T0022037.1 MGP_C3HHeJ_G0016289.1 mouse_genomes_project 1 137851160 137852726 - Rnpep protein_coding retained_intron MGP_C3HHeJ_T0022038.1 MGP_C3HHeJ_G0016289.1 mouse_genomes_project 1 137852656 137854423 - Rnpep protein_coding retained_intron MGP_C3HHeJ_T0022039.1 MGP_C3HHeJ_G0016289.1 mouse_genomes_project 1 137852952 137855226 - Rnpep protein_coding retained_intron MGP_C3HHeJ_T0012213.1 MGP_C3HHeJ_G0010317.1 mouse_genomes_project 1 167655489 167655878 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023557.1 MGP_C3HHeJ_G0016621.1 mouse_genomes_project 1 184459757 184478992 - MGP_C3HHeJ_P0023557 protein_coding protein_coding MGP_C3HHeJ_T0023573.1 MGP_C3HHeJ_G0016625.1 mouse_genomes_project 1 184689631 184749320 - MGP_C3HHeJ_P0023573 Ahctf1 protein_coding protein_coding MGP_C3HHeJ_T0023574.1 MGP_C3HHeJ_G0016625.1 mouse_genomes_project 1 184690074 184697147 - MGP_C3HHeJ_P0023574 Ahctf1 protein_coding protein_coding MGP_C3HHeJ_T0023575.1 MGP_C3HHeJ_G0016625.1 mouse_genomes_project 1 184690828 184698318 - Ahctf1 protein_coding retained_intron MGP_C3HHeJ_T0023576.1 MGP_C3HHeJ_G0016625.1 mouse_genomes_project 1 184698436 184702727 - MGP_C3HHeJ_P0023576 Ahctf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023577.1 MGP_C3HHeJ_G0016625.1 mouse_genomes_project 1 184705000 184710645 - MGP_C3HHeJ_P0023577 Ahctf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023578.1 MGP_C3HHeJ_G0016625.1 mouse_genomes_project 1 184713032 184715656 - MGP_C3HHeJ_P0023578 Ahctf1 protein_coding protein_coding MGP_C3HHeJ_T0023579.1 MGP_C3HHeJ_G0016625.1 mouse_genomes_project 1 184738568 184741724 - Ahctf1 protein_coding retained_intron MGP_C3HHeJ_T0023580.1 MGP_C3HHeJ_G0016625.1 mouse_genomes_project 1 184744426 184747712 - Ahctf1 protein_coding retained_intron MGP_C3HHeJ_T0023581.1 MGP_C3HHeJ_G0016625.1 mouse_genomes_project 1 184744432 184749246 - Ahctf1 protein_coding retained_intron MGP_C3HHeJ_T0002839.1 MGP_C3HHeJ_G0002678.1 mouse_genomes_project 1 149399530 149473657 - Gm29514 antisense antisense MGP_C3HHeJ_T0002840.1 MGP_C3HHeJ_G0002678.1 mouse_genomes_project 1 149406902 149473766 - Gm29514 antisense antisense MGP_C3HHeJ_T0011160.1 MGP_C3HHeJ_G0009293.1 mouse_genomes_project 1 106087281 106087611 + Gm23537 misc_RNA misc_RNA MGP_C3HHeJ_T0020599.1 MGP_C3HHeJ_G0015974.1 mouse_genomes_project 1 80139136 80197828 - MGP_C3HHeJ_P0020599 Wdfy1 protein_coding protein_coding MGP_C3HHeJ_T0020600.1 MGP_C3HHeJ_G0015974.1 mouse_genomes_project 1 80142234 80197797 - MGP_C3HHeJ_P0020600 Wdfy1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020601.1 MGP_C3HHeJ_G0015974.1 mouse_genomes_project 1 80154935 80213401 - MGP_C3HHeJ_P0020601 Wdfy1 protein_coding protein_coding MGP_C3HHeJ_T0020602.1 MGP_C3HHeJ_G0015974.1 mouse_genomes_project 1 80157183 80197828 - MGP_C3HHeJ_P0020602 Wdfy1 protein_coding protein_coding MGP_C3HHeJ_T0020603.1 MGP_C3HHeJ_G0015974.1 mouse_genomes_project 1 80157196 80197828 - MGP_C3HHeJ_P0020603 Wdfy1 protein_coding protein_coding MGP_C3HHeJ_T0020604.1 MGP_C3HHeJ_G0015974.1 mouse_genomes_project 1 80157385 80161951 - Wdfy1 protein_coding processed_transcript MGP_C3HHeJ_T0020605.1 MGP_C3HHeJ_G0015974.1 mouse_genomes_project 1 80170048 80197780 - Wdfy1 protein_coding retained_intron MGP_C3HHeJ_T0020606.1 MGP_C3HHeJ_G0015974.1 mouse_genomes_project 1 80170281 80198100 - MGP_C3HHeJ_P0020606 Wdfy1 protein_coding protein_coding MGP_C3HHeJ_T0019337.1 MGP_C3HHeJ_G0015745.1 mouse_genomes_project 1 41300441 41308493 + MGP_C3HHeJ_P0019337 Pou3f3 protein_coding protein_coding MGP_C3HHeJ_T0000710.1 MGP_C3HHeJ_G0000655.1 mouse_genomes_project 1 175968055 175969761 + TEC TEC MGP_C3HHeJ_T0011973.1 MGP_C3HHeJ_G0010077.1 mouse_genomes_project 1 61378998 61379388 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097831.1 MGP_C3HHeJ_G0036043.1 mouse_genomes_project 1 32938156 32939105 + pseudogene pseudogene MGP_C3HHeJ_T0020925.1 MGP_C3HHeJ_G0016038.1 mouse_genomes_project 1 88799326 88831530 - MGP_C3HHeJ_P0020925 Usp40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020926.1 MGP_C3HHeJ_G0016038.1 mouse_genomes_project 1 88799328 88869529 - MGP_C3HHeJ_P0020926 Usp40 protein_coding protein_coding MGP_C3HHeJ_T0020927.1 MGP_C3HHeJ_G0016038.1 mouse_genomes_project 1 88800650 88869512 - MGP_C3HHeJ_P0020927 Usp40 protein_coding protein_coding MGP_C3HHeJ_T0020928.1 MGP_C3HHeJ_G0016038.1 mouse_genomes_project 1 88800650 88869512 - MGP_C3HHeJ_P0020928 Usp40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020929.1 MGP_C3HHeJ_G0016038.1 mouse_genomes_project 1 88803906 88805881 - Usp40 protein_coding retained_intron MGP_C3HHeJ_T0020930.1 MGP_C3HHeJ_G0016038.1 mouse_genomes_project 1 88821049 88823224 - Usp40 protein_coding retained_intron MGP_C3HHeJ_T0020931.1 MGP_C3HHeJ_G0016038.1 mouse_genomes_project 1 88841837 88869506 - Usp40 protein_coding retained_intron MGP_C3HHeJ_T0020932.1 MGP_C3HHeJ_G0016038.1 mouse_genomes_project 1 88866871 88869528 - Usp40 protein_coding retained_intron MGP_C3HHeJ_T0020933.1 MGP_C3HHeJ_G0016038.1 mouse_genomes_project 1 88866871 88869207 - Usp40 protein_coding retained_intron MGP_C3HHeJ_T0020034.1 MGP_C3HHeJ_G0015874.1 mouse_genomes_project 1 65032604 65034978 - Cryga protein_coding retained_intron MGP_C3HHeJ_T0020035.1 MGP_C3HHeJ_G0015874.1 mouse_genomes_project 1 65032604 65034991 - MGP_C3HHeJ_P0020035 Cryga protein_coding protein_coding MGP_C3HHeJ_T0023431.1 MGP_C3HHeJ_G0016589.1 mouse_genomes_project 1 178762253 178833701 + MGP_C3HHeJ_P0023431 Spta1 protein_coding protein_coding MGP_C3HHeJ_T0023432.1 MGP_C3HHeJ_G0016589.1 mouse_genomes_project 1 178804590 178832809 + Spta1 protein_coding retained_intron MGP_C3HHeJ_T0000774.1 MGP_C3HHeJ_G0000716.1 mouse_genomes_project 1 200163240 200165066 + TEC TEC MGP_C3HHeJ_T0012190.1 MGP_C3HHeJ_G0010294.1 mouse_genomes_project 1 156875910 156877009 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000352.1 MGP_C3HHeJ_G0000302.1 mouse_genomes_project 1 10583875 10588448 - TEC TEC MGP_C3HHeJ_T0012171.1 MGP_C3HHeJ_G0010275.1 mouse_genomes_project 1 151086297 151086768 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019338.1 MGP_C3HHeJ_G0015746.1 mouse_genomes_project 1 41460365 41518040 + MGP_C3HHeJ_P0019338 Mrps9 protein_coding protein_coding MGP_C3HHeJ_T0019339.1 MGP_C3HHeJ_G0015746.1 mouse_genomes_project 1 41460367 41512030 + Mrps9 protein_coding processed_transcript MGP_C3HHeJ_T0019340.1 MGP_C3HHeJ_G0015746.1 mouse_genomes_project 1 41460367 41514364 + Mrps9 protein_coding processed_transcript MGP_C3HHeJ_T0019341.1 MGP_C3HHeJ_G0015746.1 mouse_genomes_project 1 41460376 41493232 + Mrps9 protein_coding retained_intron MGP_C3HHeJ_T0019342.1 MGP_C3HHeJ_G0015746.1 mouse_genomes_project 1 41472910 41511479 + Mrps9 protein_coding retained_intron MGP_C3HHeJ_T0019343.1 MGP_C3HHeJ_G0015746.1 mouse_genomes_project 1 41500087 41518034 + MGP_C3HHeJ_P0019343 Mrps9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019344.1 MGP_C3HHeJ_G0015746.1 mouse_genomes_project 1 41515407 41518034 + Mrps9 protein_coding retained_intron MGP_C3HHeJ_T0000330.1 MGP_C3HHeJ_G0000280.1 mouse_genomes_project 1 1983774 1984886 - TEC TEC MGP_C3HHeJ_T0002705.1 MGP_C3HHeJ_G0002576.1 mouse_genomes_project 1 18736686 18758124 - Gm28836 antisense antisense MGP_C3HHeJ_T0012129.1 MGP_C3HHeJ_G0010233.1 mouse_genomes_project 1 125925360 125926553 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019018.1 MGP_C3HHeJ_G0015685.1 mouse_genomes_project 1 32892463 33031148 + MGP_C3HHeJ_P0019018 protein_coding protein_coding MGP_C3HHeJ_T0019019.1 MGP_C3HHeJ_G0015685.1 mouse_genomes_project 1 32947175 33030238 + MGP_C3HHeJ_P0019019 protein_coding protein_coding MGP_C3HHeJ_T0019020.1 MGP_C3HHeJ_G0015685.1 mouse_genomes_project 1 32965971 33025553 + MGP_C3HHeJ_P0019020 protein_coding protein_coding MGP_C3HHeJ_T0019021.1 MGP_C3HHeJ_G0015685.1 mouse_genomes_project 1 33020173 33031724 + MGP_C3HHeJ_P0019021 protein_coding protein_coding MGP_C3HHeJ_T0019022.1 MGP_C3HHeJ_G0015685.1 mouse_genomes_project 1 33020190 33027627 + protein_coding retained_intron MGP_C3HHeJ_T0019023.1 MGP_C3HHeJ_G0015685.1 mouse_genomes_project 1 33020191 33025107 + protein_coding retained_intron MGP_C3HHeJ_T0019024.1 MGP_C3HHeJ_G0015685.1 mouse_genomes_project 1 33020210 33027320 + MGP_C3HHeJ_P0019024 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012226.1 MGP_C3HHeJ_G0010330.1 mouse_genomes_project 1 173381645 173382229 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016822.1 MGP_C3HHeJ_G0014877.1 mouse_genomes_project 1 153186906 153215661 - Ptgs2os processed_transcript antisense MGP_C3HHeJ_T0016823.1 MGP_C3HHeJ_G0014877.1 mouse_genomes_project 1 153214024 153215807 - Ptgs2os processed_transcript retained_intron MGP_C3HHeJ_T0023033.1 MGP_C3HHeJ_G0016481.1 mouse_genomes_project 1 171370729 171416500 + MGP_C3HHeJ_P0023033 Rxrg protein_coding protein_coding MGP_C3HHeJ_T0022883.1 MGP_C3HHeJ_G0016448.1 mouse_genomes_project 1 167916306 167928573 + MGP_C3HHeJ_P0022883 Ccdc181 protein_coding protein_coding MGP_C3HHeJ_T0011972.1 MGP_C3HHeJ_G0010076.1 mouse_genomes_project 1 61033826 61034528 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021812.1 MGP_C3HHeJ_G0016241.1 mouse_genomes_project 1 134859618 134913587 + MGP_C3HHeJ_P0021812 Dstyk protein_coding protein_coding MGP_C3HHeJ_T0021813.1 MGP_C3HHeJ_G0016241.1 mouse_genomes_project 1 134859667 134910724 + MGP_C3HHeJ_P0021813 Dstyk protein_coding protein_coding MGP_C3HHeJ_T0021814.1 MGP_C3HHeJ_G0016241.1 mouse_genomes_project 1 134860440 134876069 + Dstyk protein_coding processed_transcript MGP_C3HHeJ_T0021815.1 MGP_C3HHeJ_G0016241.1 mouse_genomes_project 1 134893346 134895558 + MGP_C3HHeJ_P0021815 Dstyk protein_coding protein_coding MGP_C3HHeJ_T0021816.1 MGP_C3HHeJ_G0016241.1 mouse_genomes_project 1 134898532 134904301 + Dstyk protein_coding retained_intron MGP_C3HHeJ_T0021817.1 MGP_C3HHeJ_G0016241.1 mouse_genomes_project 1 134909040 134909988 + Dstyk protein_coding retained_intron MGP_C3HHeJ_T0019197.1 MGP_C3HHeJ_G0015714.1 mouse_genomes_project 1 36233321 36248905 - MGP_C3HHeJ_P0019197 Mitd1 protein_coding protein_coding MGP_C3HHeJ_T0019198.1 MGP_C3HHeJ_G0015714.1 mouse_genomes_project 1 36237407 36248909 - MGP_C3HHeJ_P0019198 Mitd1 protein_coding protein_coding MGP_C3HHeJ_T0019199.1 MGP_C3HHeJ_G0015714.1 mouse_genomes_project 1 36237409 36238638 - Mitd1 protein_coding processed_transcript MGP_C3HHeJ_T0019200.1 MGP_C3HHeJ_G0015714.1 mouse_genomes_project 1 36237507 36240382 - Mitd1 protein_coding processed_transcript MGP_C3HHeJ_T0019201.1 MGP_C3HHeJ_G0015714.1 mouse_genomes_project 1 36240442 36248774 - Mitd1 protein_coding retained_intron MGP_C3HHeJ_T0012223.1 MGP_C3HHeJ_G0010327.1 mouse_genomes_project 1 170935866 170936275 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012180.1 MGP_C3HHeJ_G0010284.1 mouse_genomes_project 1 153263851 153264453 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021846.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135417742 135485376 - MGP_C3HHeJ_P0021846 Mdm4 protein_coding protein_coding MGP_C3HHeJ_T0021847.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135419911 135430690 - Mdm4 protein_coding processed_transcript MGP_C3HHeJ_T0021848.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135449134 135485386 - MGP_C3HHeJ_P0021848 Mdm4 protein_coding protein_coding MGP_C3HHeJ_T0021849.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135449691 135485395 - MGP_C3HHeJ_P0021849 Mdm4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021850.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135450516 135485392 - MGP_C3HHeJ_P0021850 Mdm4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021851.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135450643 135485394 - MGP_C3HHeJ_P0021851 Mdm4 protein_coding protein_coding MGP_C3HHeJ_T0021852.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135455930 135478889 - Mdm4 protein_coding processed_transcript MGP_C3HHeJ_T0021853.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135455933 135463765 - Mdm4 protein_coding retained_intron MGP_C3HHeJ_T0021854.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135458768 135460718 - Mdm4 protein_coding retained_intron MGP_C3HHeJ_T0021855.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135460466 135463568 - Mdm4 protein_coding retained_intron MGP_C3HHeJ_T0021856.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135468523 135485368 - Mdm4 protein_coding retained_intron MGP_C3HHeJ_T0021857.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135468577 135490738 - MGP_C3HHeJ_P0021857 Mdm4 protein_coding protein_coding MGP_C3HHeJ_T0021858.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135477731 135485376 - Mdm4 protein_coding retained_intron MGP_C3HHeJ_T0019605.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54112668 54115942 - Ankrd44 protein_coding retained_intron MGP_C3HHeJ_T0019606.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54112668 54399583 - MGP_C3HHeJ_P0019606 Ankrd44 protein_coding protein_coding MGP_C3HHeJ_T0019607.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54112670 54399583 - MGP_C3HHeJ_P0019607 Ankrd44 protein_coding protein_coding MGP_C3HHeJ_T0019608.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54116425 54124847 - MGP_C3HHeJ_P0019608 Ankrd44 protein_coding protein_coding MGP_C3HHeJ_T0019609.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54118997 54234809 - MGP_C3HHeJ_P0019609 Ankrd44 protein_coding protein_coding MGP_C3HHeJ_T0019610.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54122239 54159627 - Ankrd44 protein_coding retained_intron MGP_C3HHeJ_T0019611.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54134787 54191743 - Ankrd44 protein_coding retained_intron MGP_C3HHeJ_T0019612.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54191234 54193090 - Ankrd44 protein_coding retained_intron MGP_C3HHeJ_T0019613.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54200099 54206738 - Ankrd44 protein_coding retained_intron MGP_C3HHeJ_T0019614.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54206395 54399550 - Ankrd44 protein_coding retained_intron MGP_C3HHeJ_T0019615.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54214392 54237504 - Ankrd44 protein_coding retained_intron MGP_C3HHeJ_T0019616.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54231658 54239872 - Ankrd44 protein_coding processed_transcript MGP_C3HHeJ_T0019617.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54231976 54399583 - Ankrd44 protein_coding retained_intron MGP_C3HHeJ_T0019618.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54233457 54291194 - Ankrd44 protein_coding processed_transcript MGP_C3HHeJ_T0019619.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54237872 54363185 - MGP_C3HHeJ_P0019619 Ankrd44 protein_coding protein_coding MGP_C3HHeJ_T0000457.1 MGP_C3HHeJ_G0000404.1 mouse_genomes_project 1 60591544 60593596 + TEC TEC MGP_C3HHeJ_T0012156.1 MGP_C3HHeJ_G0010260.1 mouse_genomes_project 1 141862022 141862797 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021416.1 MGP_C3HHeJ_G0016156.1 mouse_genomes_project 1 118785340 118809067 + MGP_C3HHeJ_P0021416 Gm19965 protein_coding protein_coding MGP_C3HHeJ_T0019360.1 MGP_C3HHeJ_G0015751.1 mouse_genomes_project 1 42082795 42173770 + MGP_C3HHeJ_P0019360 Nck2 protein_coding protein_coding MGP_C3HHeJ_T0019361.1 MGP_C3HHeJ_G0015751.1 mouse_genomes_project 1 42083967 42100908 + Nck2 protein_coding processed_transcript MGP_C3HHeJ_T0019362.1 MGP_C3HHeJ_G0015751.1 mouse_genomes_project 1 42083967 42212398 + MGP_C3HHeJ_P0019362 Nck2 protein_coding protein_coding MGP_C3HHeJ_T0019363.1 MGP_C3HHeJ_G0015751.1 mouse_genomes_project 1 42095330 42100936 + Nck2 protein_coding processed_transcript MGP_C3HHeJ_T0019364.1 MGP_C3HHeJ_G0015751.1 mouse_genomes_project 1 42172542 42194766 + MGP_C3HHeJ_P0019364 Nck2 protein_coding protein_coding MGP_C3HHeJ_T0019365.1 MGP_C3HHeJ_G0015751.1 mouse_genomes_project 1 42173706 42210036 + MGP_C3HHeJ_P0019365 Nck2 protein_coding protein_coding MGP_C3HHeJ_T0000470.1 MGP_C3HHeJ_G0000417.1 mouse_genomes_project 1 66755300 66758403 - TEC TEC MGP_C3HHeJ_T0011989.1 MGP_C3HHeJ_G0010093.1 mouse_genomes_project 1 65406100 65406408 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019713.1 MGP_C3HHeJ_G0015817.1 mouse_genomes_project 1 57815028 57878883 + MGP_C3HHeJ_P0019713 Aox4 protein_coding protein_coding MGP_C3HHeJ_T0019714.1 MGP_C3HHeJ_G0015817.1 mouse_genomes_project 1 57815063 57870690 + Aox4 protein_coding processed_transcript MGP_C3HHeJ_T0019715.1 MGP_C3HHeJ_G0015817.1 mouse_genomes_project 1 57815082 57820042 + Aox4 protein_coding processed_transcript MGP_C3HHeJ_T0019716.1 MGP_C3HHeJ_G0015817.1 mouse_genomes_project 1 57815849 57817994 + Aox4 protein_coding retained_intron MGP_C3HHeJ_T0019717.1 MGP_C3HHeJ_G0015817.1 mouse_genomes_project 1 57847449 57851993 + Aox4 protein_coding retained_intron MGP_C3HHeJ_T0002887.1 MGP_C3HHeJ_G0002714.1 mouse_genomes_project 1 175912745 175913896 + Gm37787 antisense antisense MGP_C3HHeJ_T0019098.1 MGP_C3HHeJ_G0015699.1 mouse_genomes_project 1 34824773 34834477 - MGP_C3HHeJ_P0019098 Sema4c protein_coding protein_coding MGP_C3HHeJ_T0019099.1 MGP_C3HHeJ_G0015699.1 mouse_genomes_project 1 34824776 34834477 - MGP_C3HHeJ_P0019099 Sema4c protein_coding protein_coding MGP_C3HHeJ_T0019100.1 MGP_C3HHeJ_G0015699.1 mouse_genomes_project 1 34824776 34833654 - MGP_C3HHeJ_P0019100 Sema4c protein_coding protein_coding MGP_C3HHeJ_T0019101.1 MGP_C3HHeJ_G0015699.1 mouse_genomes_project 1 34824776 34833685 - MGP_C3HHeJ_P0019101 Sema4c protein_coding protein_coding MGP_C3HHeJ_T0019102.1 MGP_C3HHeJ_G0015699.1 mouse_genomes_project 1 34827857 34829026 - Sema4c protein_coding retained_intron MGP_C3HHeJ_T0019103.1 MGP_C3HHeJ_G0015699.1 mouse_genomes_project 1 34829355 34830358 - Sema4c protein_coding retained_intron MGP_C3HHeJ_T0019104.1 MGP_C3HHeJ_G0015699.1 mouse_genomes_project 1 34830527 34833662 - MGP_C3HHeJ_P0019104 Sema4c protein_coding protein_coding MGP_C3HHeJ_T0019105.1 MGP_C3HHeJ_G0015699.1 mouse_genomes_project 1 34832059 34834378 - MGP_C3HHeJ_P0019105 Sema4c protein_coding protein_coding MGP_C3HHeJ_T0021358.1 MGP_C3HHeJ_G0016137.1 mouse_genomes_project 1 107840816 108066705 + MGP_C3HHeJ_P0021358 Phlpp1 protein_coding protein_coding MGP_C3HHeJ_T0021359.1 MGP_C3HHeJ_G0016137.1 mouse_genomes_project 1 107952605 107958604 + Phlpp1 protein_coding retained_intron MGP_C3HHeJ_T0021360.1 MGP_C3HHeJ_G0016137.1 mouse_genomes_project 1 107982155 107984781 + Phlpp1 protein_coding processed_transcript MGP_C3HHeJ_T0022229.1 MGP_C3HHeJ_G0016327.1 mouse_genomes_project 1 143121436 143501863 + MGP_C3HHeJ_P0022229 Kcnt2 protein_coding protein_coding MGP_C3HHeJ_T0022230.1 MGP_C3HHeJ_G0016327.1 mouse_genomes_project 1 143121473 143499574 + MGP_C3HHeJ_P0022230 Kcnt2 protein_coding protein_coding MGP_C3HHeJ_T0022231.1 MGP_C3HHeJ_G0016327.1 mouse_genomes_project 1 143121485 143499871 + MGP_C3HHeJ_P0022231 Kcnt2 protein_coding protein_coding MGP_C3HHeJ_T0022232.1 MGP_C3HHeJ_G0016327.1 mouse_genomes_project 1 143330357 143331365 + Kcnt2 protein_coding retained_intron MGP_C3HHeJ_T0022233.1 MGP_C3HHeJ_G0016327.1 mouse_genomes_project 1 143330522 143412849 + Kcnt2 protein_coding processed_transcript MGP_C3HHeJ_T0022234.1 MGP_C3HHeJ_G0016327.1 mouse_genomes_project 1 143406308 143464868 + MGP_C3HHeJ_P0022234 Kcnt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023849.1 MGP_C3HHeJ_G0016680.1 mouse_genomes_project 1 191830996 191921378 - MGP_C3HHeJ_P0023849 Tgfb2 protein_coding protein_coding MGP_C3HHeJ_T0023850.1 MGP_C3HHeJ_G0016680.1 mouse_genomes_project 1 191832423 191921089 - MGP_C3HHeJ_P0023850 Tgfb2 protein_coding protein_coding MGP_C3HHeJ_T0023851.1 MGP_C3HHeJ_G0016680.1 mouse_genomes_project 1 191833784 191862632 - Tgfb2 protein_coding retained_intron MGP_C3HHeJ_T0023852.1 MGP_C3HHeJ_G0016680.1 mouse_genomes_project 1 191840737 191862698 - Tgfb2 protein_coding retained_intron MGP_C3HHeJ_T0023853.1 MGP_C3HHeJ_G0016680.1 mouse_genomes_project 1 191844612 191881579 - Tgfb2 protein_coding processed_transcript MGP_C3HHeJ_T0023854.1 MGP_C3HHeJ_G0016680.1 mouse_genomes_project 1 191905778 191919722 - Tgfb2 protein_coding processed_transcript MGP_C3HHeJ_T0002849.1 MGP_C3HHeJ_G0002684.1 mouse_genomes_project 1 156952565 156954811 - Gm29529 antisense antisense MGP_C3HHeJ_T0098682.1 MGP_C3HHeJ_G0036876.1 mouse_genomes_project 1 194019437 194019541 + Gm25269 snRNA snRNA MGP_C3HHeJ_T0002911.1 MGP_C3HHeJ_G0002735.1 mouse_genomes_project 1 191921083 191922442 + Gm29491 antisense antisense MGP_C3HHeJ_T0021084.1 MGP_C3HHeJ_G0016078.1 mouse_genomes_project 1 92619776 92635341 + MGP_C3HHeJ_P0021084 Asb1 protein_coding protein_coding MGP_C3HHeJ_T0021085.1 MGP_C3HHeJ_G0016078.1 mouse_genomes_project 1 92619799 92626188 + Asb1 protein_coding processed_transcript MGP_C3HHeJ_T0021086.1 MGP_C3HHeJ_G0016078.1 mouse_genomes_project 1 92619946 92638842 + MGP_C3HHeJ_P0021086 Asb1 protein_coding protein_coding MGP_C3HHeJ_T0021087.1 MGP_C3HHeJ_G0016078.1 mouse_genomes_project 1 92619964 92634077 + MGP_C3HHeJ_P0021087 Asb1 protein_coding protein_coding MGP_C3HHeJ_T0021088.1 MGP_C3HHeJ_G0016078.1 mouse_genomes_project 1 92619964 92634077 + MGP_C3HHeJ_P0021088 Asb1 protein_coding protein_coding MGP_C3HHeJ_T0021089.1 MGP_C3HHeJ_G0016078.1 mouse_genomes_project 1 92620312 92632016 + MGP_C3HHeJ_P0021089 Asb1 protein_coding protein_coding MGP_C3HHeJ_T0021090.1 MGP_C3HHeJ_G0016078.1 mouse_genomes_project 1 92620312 92634370 + MGP_C3HHeJ_P0021090 Asb1 protein_coding protein_coding MGP_C3HHeJ_T0023538.1 MGP_C3HHeJ_G0016616.1 mouse_genomes_project 1 183198911 183212366 - MGP_C3HHeJ_P0023538 Hnrnpu protein_coding protein_coding MGP_C3HHeJ_T0023539.1 MGP_C3HHeJ_G0016616.1 mouse_genomes_project 1 183199400 183204889 - Hnrnpu protein_coding retained_intron MGP_C3HHeJ_T0023540.1 MGP_C3HHeJ_G0016616.1 mouse_genomes_project 1 183206434 183207495 - Hnrnpu protein_coding retained_intron MGP_C3HHeJ_T0023541.1 MGP_C3HHeJ_G0016616.1 mouse_genomes_project 1 183206671 183209115 - Hnrnpu protein_coding processed_transcript MGP_C3HHeJ_T0023542.1 MGP_C3HHeJ_G0016616.1 mouse_genomes_project 1 183210210 183210974 - Hnrnpu protein_coding retained_intron MGP_C3HHeJ_T0023092.1 MGP_C3HHeJ_G0016498.1 mouse_genomes_project 1 174746333 174760556 - MGP_C3HHeJ_P0023092 Dusp12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023093.1 MGP_C3HHeJ_G0016498.1 mouse_genomes_project 1 174747019 174760639 - MGP_C3HHeJ_P0023093 Dusp12 protein_coding protein_coding MGP_C3HHeJ_T0023094.1 MGP_C3HHeJ_G0016498.1 mouse_genomes_project 1 174747019 174760298 - MGP_C3HHeJ_P0023094 Dusp12 protein_coding protein_coding MGP_C3HHeJ_T0023095.1 MGP_C3HHeJ_G0016498.1 mouse_genomes_project 1 174747019 174760494 - MGP_C3HHeJ_P0023095 Dusp12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023096.1 MGP_C3HHeJ_G0016498.1 mouse_genomes_project 1 174747020 174760506 - MGP_C3HHeJ_P0023096 Dusp12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023097.1 MGP_C3HHeJ_G0016498.1 mouse_genomes_project 1 174747351 174760495 - MGP_C3HHeJ_P0023097 Dusp12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023098.1 MGP_C3HHeJ_G0016498.1 mouse_genomes_project 1 174753329 174760103 - MGP_C3HHeJ_P0023098 Dusp12 protein_coding protein_coding MGP_C3HHeJ_T0024060.1 MGP_C3HHeJ_G0016720.1 mouse_genomes_project 1 198581304 198591091 + MGP_C3HHeJ_P0024060 A130010J15Rik protein_coding protein_coding MGP_C3HHeJ_T0024062.1 MGP_C3HHeJ_G0016720.1 mouse_genomes_project 1 198586726 198589557 + MGP_C3HHeJ_P0024062 A130010J15Rik protein_coding protein_coding MGP_C3HHeJ_T0024063.1 MGP_C3HHeJ_G0016720.1 mouse_genomes_project 1 198586750 198588090 + MGP_C3HHeJ_P0024063 A130010J15Rik protein_coding protein_coding MGP_C3HHeJ_T0024064.1 MGP_C3HHeJ_G0016720.1 mouse_genomes_project 1 198586835 198591091 + MGP_C3HHeJ_P0024064 A130010J15Rik protein_coding protein_coding MGP_C3HHeJ_T0024065.1 MGP_C3HHeJ_G0016720.1 mouse_genomes_project 1 198586838 198589559 + MGP_C3HHeJ_P0024065 A130010J15Rik protein_coding protein_coding MGP_C3HHeJ_T0024066.1 MGP_C3HHeJ_G0016720.1 mouse_genomes_project 1 198586838 198587685 + MGP_C3HHeJ_P0024066 A130010J15Rik protein_coding protein_coding MGP_C3HHeJ_T0024067.1 MGP_C3HHeJ_G0016720.1 mouse_genomes_project 1 198586844 198587811 + MGP_C3HHeJ_P0024067 A130010J15Rik protein_coding protein_coding MGP_C3HHeJ_T0024068.1 MGP_C3HHeJ_G0016720.1 mouse_genomes_project 1 198587002 198587854 + MGP_C3HHeJ_P0024068 A130010J15Rik protein_coding protein_coding MGP_C3HHeJ_T0005976.1 MGP_C3HHeJ_G0004994.1 mouse_genomes_project 1 195770069 195796637 - Gm30725 lincRNA lincRNA MGP_C3HHeJ_T0005665.1 MGP_C3HHeJ_G0004749.1 mouse_genomes_project 1 56943957 56962280 - 4930558J18Rik lincRNA lincRNA MGP_C3HHeJ_T0021886.1 MGP_C3HHeJ_G0016255.1 mouse_genomes_project 1 135843029 135859850 + MGP_C3HHeJ_P0021886 Etnk2 protein_coding protein_coding MGP_C3HHeJ_T0021887.1 MGP_C3HHeJ_G0016255.1 mouse_genomes_project 1 135843033 135854508 + Etnk2 protein_coding retained_intron MGP_C3HHeJ_T0021888.1 MGP_C3HHeJ_G0016255.1 mouse_genomes_project 1 135843305 135858903 + MGP_C3HHeJ_P0021888 Etnk2 protein_coding protein_coding MGP_C3HHeJ_T0021889.1 MGP_C3HHeJ_G0016255.1 mouse_genomes_project 1 135845221 135848592 + Etnk2 protein_coding retained_intron MGP_C3HHeJ_T0021890.1 MGP_C3HHeJ_G0016255.1 mouse_genomes_project 1 135846744 135856493 + Etnk2 protein_coding processed_transcript MGP_C3HHeJ_T0000340.1 MGP_C3HHeJ_G0000290.1 mouse_genomes_project 1 7096931 7098301 + TEC TEC MGP_C3HHeJ_T0022179.1 MGP_C3HHeJ_G0016316.1 mouse_genomes_project 1 141207169 141288360 - MGP_C3HHeJ_P0022179 Nek7 protein_coding protein_coding MGP_C3HHeJ_T0022180.1 MGP_C3HHeJ_G0016316.1 mouse_genomes_project 1 141238817 141346716 - Nek7 protein_coding retained_intron MGP_C3HHeJ_T0005973.1 MGP_C3HHeJ_G0004991.1 mouse_genomes_project 1 192662941 192677819 + Gm37896 lincRNA lincRNA MGP_C3HHeJ_T0099904.1 MGP_C3HHeJ_G0038098.1 mouse_genomes_project 1 164590554 164590635 + Snord80 snoRNA snoRNA MGP_C3HHeJ_T0019998.1 MGP_C3HHeJ_G0015865.1 mouse_genomes_project 1 64449434 64524146 + MGP_C3HHeJ_P0019998 Creb1 protein_coding protein_coding MGP_C3HHeJ_T0019999.1 MGP_C3HHeJ_G0015865.1 mouse_genomes_project 1 64449468 64478332 + Creb1 protein_coding retained_intron MGP_C3HHeJ_T0020000.1 MGP_C3HHeJ_G0015865.1 mouse_genomes_project 1 64449473 64498510 + MGP_C3HHeJ_P0020000 Creb1 protein_coding protein_coding MGP_C3HHeJ_T0020001.1 MGP_C3HHeJ_G0015865.1 mouse_genomes_project 1 64449473 64523067 + MGP_C3HHeJ_P0020001 Creb1 protein_coding protein_coding MGP_C3HHeJ_T0020002.1 MGP_C3HHeJ_G0015865.1 mouse_genomes_project 1 64449496 64494327 + Creb1 protein_coding processed_transcript MGP_C3HHeJ_T0020003.1 MGP_C3HHeJ_G0015865.1 mouse_genomes_project 1 64449523 64519278 + MGP_C3HHeJ_P0020003 Creb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020004.1 MGP_C3HHeJ_G0015865.1 mouse_genomes_project 1 64449558 64519288 + MGP_C3HHeJ_P0020004 Creb1 protein_coding protein_coding MGP_C3HHeJ_T0020005.1 MGP_C3HHeJ_G0015865.1 mouse_genomes_project 1 64479937 64481579 + Creb1 protein_coding retained_intron MGP_C3HHeJ_T0020006.1 MGP_C3HHeJ_G0015865.1 mouse_genomes_project 1 64495601 64499443 + Creb1 protein_coding retained_intron MGP_C3HHeJ_T0000747.1 MGP_C3HHeJ_G0000690.1 mouse_genomes_project 1 187811002 187812956 + TEC TEC MGP_C3HHeJ_T0019578.1 MGP_C3HHeJ_G0015790.1 mouse_genomes_project 1 52581556 52610372 - MGP_C3HHeJ_P0019578 Gm28551 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098664.1 MGP_C3HHeJ_G0036858.1 mouse_genomes_project 1 167010533 167010641 + Gm24940 snRNA snRNA MGP_C3HHeJ_T0002902.1 MGP_C3HHeJ_G0002728.1 mouse_genomes_project 1 185810072 185813156 + H3f3aos antisense antisense MGP_C3HHeJ_T0002903.1 MGP_C3HHeJ_G0002728.1 mouse_genomes_project 1 185810080 185812985 + H3f3aos antisense antisense MGP_C3HHeJ_T0005782.1 MGP_C3HHeJ_G0004842.1 mouse_genomes_project 1 102650944 102666493 + Gm20268 lincRNA lincRNA MGP_C3HHeJ_T0002878.1 MGP_C3HHeJ_G0002708.1 mouse_genomes_project 1 170988457 170997477 + Gm37982 antisense antisense MGP_C3HHeJ_T0012054.1 MGP_C3HHeJ_G0010158.1 mouse_genomes_project 1 97951711 97952462 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019464.1 MGP_C3HHeJ_G0015772.1 mouse_genomes_project 1 50105828 50118854 + Tmeff2 protein_coding processed_transcript MGP_C3HHeJ_T0019465.1 MGP_C3HHeJ_G0015772.1 mouse_genomes_project 1 50105828 50120372 + Tmeff2 protein_coding processed_transcript MGP_C3HHeJ_T0019466.1 MGP_C3HHeJ_G0015772.1 mouse_genomes_project 1 50114903 50186450 + MGP_C3HHeJ_P0019466 Tmeff2 protein_coding protein_coding MGP_C3HHeJ_T0019467.1 MGP_C3HHeJ_G0015772.1 mouse_genomes_project 1 50133395 50406028 + MGP_C3HHeJ_P0019467 Tmeff2 protein_coding protein_coding MGP_C3HHeJ_T0019322.1 MGP_C3HHeJ_G0015740.1 mouse_genomes_project 1 38984418 39019544 + MGP_C3HHeJ_P0019322 Il18rap protein_coding protein_coding MGP_C3HHeJ_T0019323.1 MGP_C3HHeJ_G0015740.1 mouse_genomes_project 1 38984461 39007533 + Il18rap protein_coding retained_intron MGP_C3HHeJ_T0019324.1 MGP_C3HHeJ_G0015740.1 mouse_genomes_project 1 38984504 38994941 + Il18rap protein_coding retained_intron MGP_C3HHeJ_T0019325.1 MGP_C3HHeJ_G0015740.1 mouse_genomes_project 1 39009740 39015742 + Il18rap protein_coding retained_intron MGP_C3HHeJ_T0021520.1 MGP_C3HHeJ_G0016177.1 mouse_genomes_project 1 122659613 122665187 + MGP_C3HHeJ_P0021520 En1 protein_coding protein_coding MGP_C3HHeJ_T0000727.1 MGP_C3HHeJ_G0000672.1 mouse_genomes_project 1 181868729 181869525 - TEC TEC MGP_C3HHeJ_T0021288.1 MGP_C3HHeJ_G0016125.1 mouse_genomes_project 1 98975262 99031422 - MGP_C3HHeJ_P0021288 D1Ertd622e protein_coding protein_coding MGP_C3HHeJ_T0021289.1 MGP_C3HHeJ_G0016125.1 mouse_genomes_project 1 99015298 99031024 - MGP_C3HHeJ_P0021289 D1Ertd622e protein_coding protein_coding MGP_C3HHeJ_T0099890.1 MGP_C3HHeJ_G0038084.1 mouse_genomes_project 1 146710314 146710449 + Gm25663 snoRNA snoRNA MGP_C3HHeJ_T0099821.1 MGP_C3HHeJ_G0038015.1 mouse_genomes_project 1 8060189 8060280 + Gm22963 snoRNA snoRNA MGP_C3HHeJ_T0020676.1 MGP_C3HHeJ_G0015991.1 mouse_genomes_project 1 83677791 83680192 + MGP_C3HHeJ_P0020676 Ccl20 protein_coding protein_coding MGP_C3HHeJ_T0020677.1 MGP_C3HHeJ_G0015991.1 mouse_genomes_project 1 83677799 83680193 + MGP_C3HHeJ_P0020677 Ccl20 protein_coding protein_coding MGP_C3HHeJ_T0020678.1 MGP_C3HHeJ_G0015991.1 mouse_genomes_project 1 83677818 83680193 + MGP_C3HHeJ_P0020678 Ccl20 protein_coding protein_coding MGP_C3HHeJ_T0020466.1 MGP_C3HHeJ_G0015952.1 mouse_genomes_project 1 75560085 75567430 - MGP_C3HHeJ_P0020466 Resp18 protein_coding protein_coding MGP_C3HHeJ_T0020467.1 MGP_C3HHeJ_G0015952.1 mouse_genomes_project 1 75560087 75562152 - Resp18 protein_coding retained_intron MGP_C3HHeJ_T0020468.1 MGP_C3HHeJ_G0015952.1 mouse_genomes_project 1 75560197 75567331 - MGP_C3HHeJ_P0020468 Resp18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020469.1 MGP_C3HHeJ_G0015952.1 mouse_genomes_project 1 75561958 75567299 - Resp18 protein_coding retained_intron MGP_C3HHeJ_T0000387.1 MGP_C3HHeJ_G0000335.1 mouse_genomes_project 1 23437901 23441495 - TEC TEC MGP_C3HHeJ_T0023963.1 MGP_C3HHeJ_G0016699.1 mouse_genomes_project 1 196438579 196451320 + MGP_C3HHeJ_P0023963 Nsl1 protein_coding protein_coding MGP_C3HHeJ_T0023964.1 MGP_C3HHeJ_G0016699.1 mouse_genomes_project 1 196438591 196453053 + MGP_C3HHeJ_P0023964 Nsl1 protein_coding protein_coding MGP_C3HHeJ_T0023965.1 MGP_C3HHeJ_G0016699.1 mouse_genomes_project 1 196438598 196465185 + MGP_C3HHeJ_P0023965 Nsl1 protein_coding protein_coding MGP_C3HHeJ_T0009430.1 MGP_C3HHeJ_G0007563.1 mouse_genomes_project 1 94009650 94009716 + Mir149 miRNA miRNA MGP_C3HHeJ_T0005884.1 MGP_C3HHeJ_G0004923.1 mouse_genomes_project 1 163519583 163522214 - Gm37294 lincRNA lincRNA MGP_C3HHeJ_T0101328.1 MGP_C3HHeJ_G0039411.1 mouse_genomes_project 1 18780602 18793522 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101329.1 MGP_C3HHeJ_G0039411.1 mouse_genomes_project 1 18780994 18793355 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101330.1 MGP_C3HHeJ_G0039411.1 mouse_genomes_project 1 18785228 18793457 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0018619.1 MGP_C3HHeJ_G0015603.1 mouse_genomes_project 1 7098237 7143821 - MGP_C3HHeJ_P0018619 Ppp1r42 protein_coding protein_coding MGP_C3HHeJ_T0018620.1 MGP_C3HHeJ_G0015603.1 mouse_genomes_project 1 7098237 7119282 - MGP_C3HHeJ_P0018620 Ppp1r42 protein_coding protein_coding MGP_C3HHeJ_T0018621.1 MGP_C3HHeJ_G0015603.1 mouse_genomes_project 1 7098237 7137290 - MGP_C3HHeJ_P0018621 Ppp1r42 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018622.1 MGP_C3HHeJ_G0015603.1 mouse_genomes_project 1 7098436 7143815 - MGP_C3HHeJ_P0018622 Ppp1r42 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018623.1 MGP_C3HHeJ_G0015603.1 mouse_genomes_project 1 7108422 7143815 - MGP_C3HHeJ_P0018623 Ppp1r42 protein_coding protein_coding MGP_C3HHeJ_T0018624.1 MGP_C3HHeJ_G0015603.1 mouse_genomes_project 1 7128641 7143815 - Ppp1r42 protein_coding retained_intron MGP_C3HHeJ_T0098316.1 MGP_C3HHeJ_G0036528.1 mouse_genomes_project 1 69750119 69753606 - Gm29112 sense_intronic sense_intronic MGP_C3HHeJ_T0000495.1 MGP_C3HHeJ_G0000442.1 mouse_genomes_project 1 80049588 80051104 - TEC TEC MGP_C3HHeJ_T0000775.1 MGP_C3HHeJ_G0000717.1 mouse_genomes_project 1 200171001 200174565 + TEC TEC MGP_C3HHeJ_T0002760.1 MGP_C3HHeJ_G0002620.1 mouse_genomes_project 1 71864323 71868933 + Apol7d antisense antisense MGP_C3HHeJ_T0002761.1 MGP_C3HHeJ_G0002620.1 mouse_genomes_project 1 71864374 71873523 + Apol7d antisense antisense MGP_C3HHeJ_T0002762.1 MGP_C3HHeJ_G0002620.1 mouse_genomes_project 1 71864821 71874313 + Apol7d antisense antisense MGP_C3HHeJ_T0002763.1 MGP_C3HHeJ_G0002620.1 mouse_genomes_project 1 71864825 71868721 + Apol7d antisense antisense MGP_C3HHeJ_T0019651.1 MGP_C3HHeJ_G0015804.1 mouse_genomes_project 1 54737056 54748354 + MGP_C3HHeJ_P0019651 Mars2 protein_coding protein_coding MGP_C3HHeJ_T0018874.1 MGP_C3HHeJ_G0015657.1 mouse_genomes_project 1 21465092 21528943 - Smap1 protein_coding processed_transcript MGP_C3HHeJ_T0018875.1 MGP_C3HHeJ_G0015657.1 mouse_genomes_project 1 21465855 21542398 - MGP_C3HHeJ_P0018875 Smap1 protein_coding protein_coding MGP_C3HHeJ_T0018876.1 MGP_C3HHeJ_G0015657.1 mouse_genomes_project 1 21466408 21468008 - Smap1 protein_coding processed_transcript MGP_C3HHeJ_T0018877.1 MGP_C3HHeJ_G0015657.1 mouse_genomes_project 1 21466659 21542266 - MGP_C3HHeJ_P0018877 Smap1 protein_coding protein_coding MGP_C3HHeJ_T0018878.1 MGP_C3HHeJ_G0015657.1 mouse_genomes_project 1 21468510 21489123 - Smap1 protein_coding processed_transcript MGP_C3HHeJ_T0018879.1 MGP_C3HHeJ_G0015657.1 mouse_genomes_project 1 21468763 21528910 - Smap1 protein_coding processed_transcript MGP_C3HHeJ_T0018880.1 MGP_C3HHeJ_G0015657.1 mouse_genomes_project 1 21469025 21507970 - Smap1 protein_coding retained_intron MGP_C3HHeJ_T0009440.1 MGP_C3HHeJ_G0007573.1 mouse_genomes_project 1 120955537 120955618 + Mir6346 miRNA miRNA MGP_C3HHeJ_T0000439.1 MGP_C3HHeJ_G0000386.1 mouse_genomes_project 1 53223565 53225022 + TEC TEC MGP_C3HHeJ_T0000694.1 MGP_C3HHeJ_G0000639.1 mouse_genomes_project 1 166071757 166074021 + TEC TEC MGP_C3HHeJ_T0011161.1 MGP_C3HHeJ_G0009294.1 mouse_genomes_project 1 133491623 133491976 - Gm25717 misc_RNA misc_RNA MGP_C3HHeJ_T0005896.1 MGP_C3HHeJ_G0004932.1 mouse_genomes_project 1 168153383 168164957 + Gm26685 lincRNA lincRNA MGP_C3HHeJ_T0005804.1 MGP_C3HHeJ_G0004859.1 mouse_genomes_project 1 121926165 121934241 + lincRNA lincRNA MGP_C3HHeJ_T0019870.1 MGP_C3HHeJ_G0015843.1 mouse_genomes_project 1 59874387 59903691 - MGP_C3HHeJ_P0019870 Wdr12 protein_coding protein_coding MGP_C3HHeJ_T0019871.1 MGP_C3HHeJ_G0015843.1 mouse_genomes_project 1 59881922 59904428 - MGP_C3HHeJ_P0019871 Wdr12 protein_coding protein_coding MGP_C3HHeJ_T0019872.1 MGP_C3HHeJ_G0015843.1 mouse_genomes_project 1 59881922 59903929 - MGP_C3HHeJ_P0019872 Wdr12 protein_coding protein_coding MGP_C3HHeJ_T0019873.1 MGP_C3HHeJ_G0015843.1 mouse_genomes_project 1 59888140 59891600 - Wdr12 protein_coding retained_intron MGP_C3HHeJ_T0019874.1 MGP_C3HHeJ_G0015843.1 mouse_genomes_project 1 59888850 59891777 - Wdr12 protein_coding processed_transcript MGP_C3HHeJ_T0019875.1 MGP_C3HHeJ_G0015843.1 mouse_genomes_project 1 59893878 59903918 - MGP_C3HHeJ_P0019875 Wdr12 protein_coding protein_coding MGP_C3HHeJ_T0019876.1 MGP_C3HHeJ_G0015843.1 mouse_genomes_project 1 59893878 59903908 - MGP_C3HHeJ_P0019876 Wdr12 protein_coding protein_coding MGP_C3HHeJ_T0019877.1 MGP_C3HHeJ_G0015843.1 mouse_genomes_project 1 59899835 59903480 - Wdr12 protein_coding retained_intron MGP_C3HHeJ_T0021542.1 MGP_C3HHeJ_G0016182.1 mouse_genomes_project 1 125463166 126226313 - MGP_C3HHeJ_P0021542 Dpp10 protein_coding protein_coding MGP_C3HHeJ_T0021543.1 MGP_C3HHeJ_G0016182.1 mouse_genomes_project 1 125473189 126224665 - MGP_C3HHeJ_P0021543 Dpp10 protein_coding protein_coding MGP_C3HHeJ_T0021544.1 MGP_C3HHeJ_G0016182.1 mouse_genomes_project 1 125763306 125810951 - Dpp10 protein_coding processed_transcript MGP_C3HHeJ_T0021545.1 MGP_C3HHeJ_G0016182.1 mouse_genomes_project 1 125784721 126224757 - Dpp10 protein_coding processed_transcript MGP_C3HHeJ_T0019585.1 MGP_C3HHeJ_G0015792.1 mouse_genomes_project 1 53186343 53217347 - MGP_C3HHeJ_P0019585 Stk17b protein_coding protein_coding MGP_C3HHeJ_T0019586.1 MGP_C3HHeJ_G0015792.1 mouse_genomes_project 1 53192823 53194944 - Stk17b protein_coding retained_intron MGP_C3HHeJ_T0012089.1 MGP_C3HHeJ_G0010193.1 mouse_genomes_project 1 112214978 112215516 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012019.1 MGP_C3HHeJ_G0010123.1 mouse_genomes_project 1 81431211 81431678 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012145.1 MGP_C3HHeJ_G0010249.1 mouse_genomes_project 1 139132971 139133343 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009388.1 MGP_C3HHeJ_G0007521.1 mouse_genomes_project 1 27958569 27958679 + Gm23771 miRNA miRNA MGP_C3HHeJ_T0019120.1 MGP_C3HHeJ_G0015702.1 mouse_genomes_project 1 34985716 34997625 - MGP_C3HHeJ_P0019120 Actr1b protein_coding protein_coding MGP_C3HHeJ_T0019121.1 MGP_C3HHeJ_G0015702.1 mouse_genomes_project 1 34988815 34989252 - Actr1b protein_coding retained_intron MGP_C3HHeJ_T0019122.1 MGP_C3HHeJ_G0015702.1 mouse_genomes_project 1 34989303 34997564 - Actr1b protein_coding retained_intron MGP_C3HHeJ_T0019123.1 MGP_C3HHeJ_G0015702.1 mouse_genomes_project 1 34989394 34997295 - MGP_C3HHeJ_P0019123 Actr1b protein_coding protein_coding MGP_C3HHeJ_T0019124.1 MGP_C3HHeJ_G0015702.1 mouse_genomes_project 1 34989415 35003165 - MGP_C3HHeJ_P0019124 Actr1b protein_coding protein_coding MGP_C3HHeJ_T0019125.1 MGP_C3HHeJ_G0015702.1 mouse_genomes_project 1 34990107 34994788 - Actr1b protein_coding retained_intron MGP_C3HHeJ_T0019126.1 MGP_C3HHeJ_G0015702.1 mouse_genomes_project 1 34994162 34997536 - Actr1b protein_coding processed_transcript MGP_C3HHeJ_T0012092.1 MGP_C3HHeJ_G0010196.1 mouse_genomes_project 1 113672491 113675682 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022241.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146636964 146676748 + Glrx2 protein_coding retained_intron MGP_C3HHeJ_T0022242.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146663933 146676750 + MGP_C3HHeJ_P0022242 Glrx2 protein_coding protein_coding MGP_C3HHeJ_T0022243.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146664461 146672712 + Glrx2 protein_coding processed_transcript MGP_C3HHeJ_T0022244.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146664461 146679373 + MGP_C3HHeJ_P0022244 Glrx2 protein_coding protein_coding MGP_C3HHeJ_T0022245.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146664470 146673078 + Glrx2 protein_coding retained_intron MGP_C3HHeJ_T0022246.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146664514 146672815 + Glrx2 protein_coding processed_transcript MGP_C3HHeJ_T0022247.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146664519 146676750 + MGP_C3HHeJ_P0022247 Glrx2 protein_coding protein_coding MGP_C3HHeJ_T0022248.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146664522 146675573 + MGP_C3HHeJ_P0022248 Glrx2 protein_coding protein_coding MGP_C3HHeJ_T0022249.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146664550 146677283 + MGP_C3HHeJ_P0022249 Glrx2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022250.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146665279 146680906 + MGP_C3HHeJ_P0022250 Glrx2 protein_coding protein_coding MGP_C3HHeJ_T0022251.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146673387 146675638 + Glrx2 protein_coding retained_intron MGP_C3HHeJ_T0022252.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146674958 146676660 + Glrx2 protein_coding retained_intron MGP_C3HHeJ_T0022253.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146675944 146676749 + Glrx2 protein_coding processed_transcript MGP_C3HHeJ_T0005802.1 MGP_C3HHeJ_G0004858.1 mouse_genomes_project 1 121553287 121559977 - 3830432H09Rik lincRNA lincRNA MGP_C3HHeJ_T0005803.1 MGP_C3HHeJ_G0004858.1 mouse_genomes_project 1 121554100 121559057 - 3830432H09Rik lincRNA lincRNA MGP_C3HHeJ_T0011868.1 MGP_C3HHeJ_G0009972.1 mouse_genomes_project 1 32135763 32136097 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020877.1 MGP_C3HHeJ_G0016032.1 mouse_genomes_project 1 88289810 88326522 - MGP_C3HHeJ_P0020877 Ngef protein_coding protein_coding MGP_C3HHeJ_T0020878.1 MGP_C3HHeJ_G0016032.1 mouse_genomes_project 1 88289810 88395577 - MGP_C3HHeJ_P0020878 Ngef protein_coding protein_coding MGP_C3HHeJ_T0020879.1 MGP_C3HHeJ_G0016032.1 mouse_genomes_project 1 88291661 88299145 - MGP_C3HHeJ_P0020879 Ngef protein_coding protein_coding MGP_C3HHeJ_T0020880.1 MGP_C3HHeJ_G0016032.1 mouse_genomes_project 1 88292705 88299185 - Ngef protein_coding retained_intron MGP_C3HHeJ_T0002818.1 MGP_C3HHeJ_G0002661.1 mouse_genomes_project 1 133660615 133664031 + Gm28913 antisense antisense MGP_C3HHeJ_T0020085.1 MGP_C3HHeJ_G0015882.1 mouse_genomes_project 1 66447406 66687847 + MGP_C3HHeJ_P0020085 Unc80 protein_coding protein_coding MGP_C3HHeJ_T0020086.1 MGP_C3HHeJ_G0015882.1 mouse_genomes_project 1 66447453 66490132 + MGP_C3HHeJ_P0020086 Unc80 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020087.1 MGP_C3HHeJ_G0015882.1 mouse_genomes_project 1 66447469 66467313 + Unc80 protein_coding retained_intron MGP_C3HHeJ_T0020088.1 MGP_C3HHeJ_G0015882.1 mouse_genomes_project 1 66447486 66671192 + MGP_C3HHeJ_P0020088 Unc80 protein_coding unknown_likely_coding MGP_C3HHeJ_T0020089.1 MGP_C3HHeJ_G0015882.1 mouse_genomes_project 1 66662094 66662672 + Unc80 protein_coding retained_intron MGP_C3HHeJ_T0020090.1 MGP_C3HHeJ_G0015882.1 mouse_genomes_project 1 66668034 66684626 + MGP_C3HHeJ_P0020090 Unc80 protein_coding protein_coding MGP_C3HHeJ_T0000714.1 MGP_C3HHeJ_G0000659.1 mouse_genomes_project 1 179965213 179967023 - TEC TEC MGP_C3HHeJ_T0101339.1 MGP_C3HHeJ_G0039416.1 mouse_genomes_project 1 174086800 174088498 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101340.1 MGP_C3HHeJ_G0039416.1 mouse_genomes_project 1 174088138 174088339 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0009467.1 MGP_C3HHeJ_G0007600.1 mouse_genomes_project 1 177888474 177888544 + Gm44339 miRNA miRNA MGP_C3HHeJ_T0002915.1 MGP_C3HHeJ_G0002739.1 mouse_genomes_project 1 192837864 192873435 - Gm36388 antisense antisense MGP_C3HHeJ_T0000737.1 MGP_C3HHeJ_G0000681.1 mouse_genomes_project 1 185445531 185449264 - TEC TEC MGP_C3HHeJ_T0005642.1 MGP_C3HHeJ_G0004731.1 mouse_genomes_project 1 42402478 42402977 - Gm29156 lincRNA lincRNA MGP_C3HHeJ_T0011813.1 MGP_C3HHeJ_G0009917.1 mouse_genomes_project 1 15404194 15407320 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000669.1 MGP_C3HHeJ_G0000614.1 mouse_genomes_project 1 160728141 160729318 - TEC TEC MGP_C3HHeJ_T0011148.1 MGP_C3HHeJ_G0009281.1 mouse_genomes_project 1 36338935 36339172 + Gm23409 misc_RNA misc_RNA MGP_C3HHeJ_T0022028.1 MGP_C3HHeJ_G0016288.1 mouse_genomes_project 1 137829080 137834078 - MGP_C3HHeJ_P0022028 Elf3 protein_coding protein_coding MGP_C3HHeJ_T0022029.1 MGP_C3HHeJ_G0016288.1 mouse_genomes_project 1 137829084 137833948 - MGP_C3HHeJ_P0022029 Elf3 protein_coding protein_coding MGP_C3HHeJ_T0022030.1 MGP_C3HHeJ_G0016288.1 mouse_genomes_project 1 137832175 137833168 - Elf3 protein_coding retained_intron MGP_C3HHeJ_T0018719.1 MGP_C3HHeJ_G0015615.1 mouse_genomes_project 1 10851753 10898072 - MGP_C3HHeJ_P0018719 Lactb2 protein_coding protein_coding MGP_C3HHeJ_T0018720.1 MGP_C3HHeJ_G0015615.1 mouse_genomes_project 1 10858597 10867015 - Lactb2 protein_coding retained_intron MGP_C3HHeJ_T0022678.1 MGP_C3HHeJ_G0016407.1 mouse_genomes_project 1 163698803 163705471 + MGP_C3HHeJ_P0022678 Mrps14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022679.1 MGP_C3HHeJ_G0016407.1 mouse_genomes_project 1 163698803 163713724 + MGP_C3HHeJ_P0022679 Mrps14 protein_coding protein_coding MGP_C3HHeJ_T0022680.1 MGP_C3HHeJ_G0016407.1 mouse_genomes_project 1 163698891 163705463 + MGP_C3HHeJ_P0022680 Mrps14 protein_coding protein_coding MGP_C3HHeJ_T0000614.1 MGP_C3HHeJ_G0000560.1 mouse_genomes_project 1 139932626 139934542 + TEC TEC MGP_C3HHeJ_T0099891.1 MGP_C3HHeJ_G0038085.1 mouse_genomes_project 1 148235201 148235328 - Gm25460 snoRNA snoRNA MGP_C3HHeJ_T0021202.1 MGP_C3HHeJ_G0016106.1 mouse_genomes_project 1 94516198 94548594 + MGP_C3HHeJ_P0021202 Ppp1r7 protein_coding protein_coding MGP_C3HHeJ_T0021203.1 MGP_C3HHeJ_G0016106.1 mouse_genomes_project 1 94516999 94525966 + MGP_C3HHeJ_P0021203 Ppp1r7 protein_coding protein_coding MGP_C3HHeJ_T0021204.1 MGP_C3HHeJ_G0016106.1 mouse_genomes_project 1 94517051 94525897 + MGP_C3HHeJ_P0021204 Ppp1r7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000361.1 MGP_C3HHeJ_G0000311.1 mouse_genomes_project 1 13559488 13561809 - TEC TEC MGP_C3HHeJ_T0012187.1 MGP_C3HHeJ_G0010291.1 mouse_genomes_project 1 155607989 155608441 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019773.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58386930 58391156 + protein_coding processed_transcript MGP_C3HHeJ_T0019774.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58386930 58436244 + protein_coding processed_transcript MGP_C3HHeJ_T0019775.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58386932 58414908 + protein_coding processed_transcript MGP_C3HHeJ_T0019776.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58386938 58391573 + protein_coding processed_transcript MGP_C3HHeJ_T0019777.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58386956 58391159 + protein_coding processed_transcript MGP_C3HHeJ_T0019778.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58386966 58396003 + protein_coding processed_transcript MGP_C3HHeJ_T0019779.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58387138 58435825 + MGP_C3HHeJ_P0019779 protein_coding unknown_likely_coding MGP_C3HHeJ_T0019780.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58390563 58416889 + MGP_C3HHeJ_P0019780 protein_coding protein_coding MGP_C3HHeJ_T0019781.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58390571 58401519 + protein_coding processed_transcript MGP_C3HHeJ_T0019782.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58391155 58396011 + protein_coding retained_intron MGP_C3HHeJ_T0019783.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58410063 58434356 + protein_coding processed_transcript MGP_C3HHeJ_T0023001.1 MGP_C3HHeJ_G0016471.1 mouse_genomes_project 1 170105276 170130225 - MGP_C3HHeJ_P0023001 Pogk protein_coding protein_coding MGP_C3HHeJ_T0023002.1 MGP_C3HHeJ_G0016471.1 mouse_genomes_project 1 170112882 170129834 - MGP_C3HHeJ_P0023002 Pogk protein_coding protein_coding MGP_C3HHeJ_T0023003.1 MGP_C3HHeJ_G0016471.1 mouse_genomes_project 1 170114268 170130271 - MGP_C3HHeJ_P0023003 Pogk protein_coding protein_coding MGP_C3HHeJ_T0023004.1 MGP_C3HHeJ_G0016471.1 mouse_genomes_project 1 170116051 170130230 - MGP_C3HHeJ_P0023004 Pogk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023005.1 MGP_C3HHeJ_G0016471.1 mouse_genomes_project 1 170116823 170130306 - MGP_C3HHeJ_P0023005 Pogk protein_coding protein_coding MGP_C3HHeJ_T0023006.1 MGP_C3HHeJ_G0016471.1 mouse_genomes_project 1 170123792 170129732 - MGP_C3HHeJ_P0023006 Pogk protein_coding protein_coding MGP_C3HHeJ_T0005648.1 MGP_C3HHeJ_G0004736.1 mouse_genomes_project 1 50021147 50023474 + Gm28321 lincRNA lincRNA MGP_C3HHeJ_T0009479.1 MGP_C3HHeJ_G0007612.1 mouse_genomes_project 1 200320133 200320197 + Mir3962 miRNA miRNA MGP_C3HHeJ_T0009385.1 MGP_C3HHeJ_G0007518.1 mouse_genomes_project 1 27238273 27238361 + Gm22679 miRNA miRNA MGP_C3HHeJ_T0019569.1 MGP_C3HHeJ_G0015788.1 mouse_genomes_project 1 52547750 52552609 + Ormdl1 protein_coding retained_intron MGP_C3HHeJ_T0019570.1 MGP_C3HHeJ_G0015788.1 mouse_genomes_project 1 52547750 52566014 + MGP_C3HHeJ_P0019570 Ormdl1 protein_coding protein_coding MGP_C3HHeJ_T0011971.1 MGP_C3HHeJ_G0010075.1 mouse_genomes_project 1 60950868 60953495 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012158.1 MGP_C3HHeJ_G0010262.1 mouse_genomes_project 1 142887747 142893237 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019468.1 MGP_C3HHeJ_G0015773.1 mouse_genomes_project 1 50505725 50520175 + MGP_C3HHeJ_P0019468 Sdpr protein_coding protein_coding MGP_C3HHeJ_T0020954.1 MGP_C3HHeJ_G0016050.1 mouse_genomes_project 1 89208879 89229666 - MGP_C3HHeJ_P0020954 protein_coding protein_coding MGP_C3HHeJ_T0020955.1 MGP_C3HHeJ_G0016050.1 mouse_genomes_project 1 89211237 89229640 - MGP_C3HHeJ_P0020955 protein_coding protein_coding MGP_C3HHeJ_T0020956.1 MGP_C3HHeJ_G0016050.1 mouse_genomes_project 1 89212371 89229418 - MGP_C3HHeJ_P0020956 protein_coding protein_coding MGP_C3HHeJ_T0020957.1 MGP_C3HHeJ_G0016050.1 mouse_genomes_project 1 89216656 89220569 - MGP_C3HHeJ_P0020957 protein_coding protein_coding MGP_C3HHeJ_T0020958.1 MGP_C3HHeJ_G0016050.1 mouse_genomes_project 1 89220513 89224399 - protein_coding retained_intron MGP_C3HHeJ_T0020959.1 MGP_C3HHeJ_G0016050.1 mouse_genomes_project 1 89220554 89222563 - protein_coding retained_intron MGP_C3HHeJ_T0020960.1 MGP_C3HHeJ_G0016050.1 mouse_genomes_project 1 89226243 89229662 - protein_coding retained_intron MGP_C3HHeJ_T0021166.1 MGP_C3HHeJ_G0016098.1 mouse_genomes_project 1 94166618 94173763 + MGP_C3HHeJ_P0021166 Aqp12 protein_coding protein_coding MGP_C3HHeJ_T0011951.1 MGP_C3HHeJ_G0010055.1 mouse_genomes_project 1 57150136 57152890 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021936.1 MGP_C3HHeJ_G0016267.1 mouse_genomes_project 1 136630288 136667756 + MGP_C3HHeJ_P0021936 Chit1 protein_coding protein_coding MGP_C3HHeJ_T0021937.1 MGP_C3HHeJ_G0016267.1 mouse_genomes_project 1 136630288 136667756 + MGP_C3HHeJ_P0021937 Chit1 protein_coding protein_coding MGP_C3HHeJ_T0021938.1 MGP_C3HHeJ_G0016267.1 mouse_genomes_project 1 136653907 136667755 + MGP_C3HHeJ_P0021938 Chit1 protein_coding protein_coding MGP_C3HHeJ_T0021965.1 MGP_C3HHeJ_G0016274.1 mouse_genomes_project 1 136914185 136919223 + MGP_C3HHeJ_P0021965 4933406M09Rik protein_coding protein_coding MGP_C3HHeJ_T0097955.1 MGP_C3HHeJ_G0036167.1 mouse_genomes_project 1 45223479 45223598 + n-R5s211 rRNA rRNA MGP_C3HHeJ_T0005673.1 MGP_C3HHeJ_G0004755.1 mouse_genomes_project 1 61099650 61105874 - Gm28083 lincRNA lincRNA MGP_C3HHeJ_T0098325.1 MGP_C3HHeJ_G0036536.1 mouse_genomes_project 1 137989729 137994323 - Gm28277 sense_intronic sense_intronic MGP_C3HHeJ_T0023492.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181365253 181440052 - MGP_C3HHeJ_P0023492 Cep170 protein_coding protein_coding MGP_C3HHeJ_T0023493.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181365262 181446952 - MGP_C3HHeJ_P0023493 Cep170 protein_coding protein_coding MGP_C3HHeJ_T0023494.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181365262 181387555 - MGP_C3HHeJ_P0023494 Cep170 protein_coding protein_coding MGP_C3HHeJ_T0023495.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181365263 181426561 - MGP_C3HHeJ_P0023495 Cep170 protein_coding protein_coding MGP_C3HHeJ_T0023496.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181365701 181382351 - Cep170 protein_coding retained_intron MGP_C3HHeJ_T0023497.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181365739 181388738 - MGP_C3HHeJ_P0023497 Cep170 protein_coding protein_coding MGP_C3HHeJ_T0023498.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181365941 181426571 - MGP_C3HHeJ_P0023498 Cep170 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023499.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181366750 181382000 - MGP_C3HHeJ_P0023499 Cep170 protein_coding protein_coding MGP_C3HHeJ_T0023500.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181367188 181386619 - Cep170 protein_coding processed_transcript MGP_C3HHeJ_T0023501.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181372083 181374706 - Cep170 protein_coding retained_intron MGP_C3HHeJ_T0023502.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181387373 181421176 - MGP_C3HHeJ_P0023502 Cep170 protein_coding unknown_likely_coding MGP_C3HHeJ_T0023503.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181404931 181411230 - Cep170 protein_coding retained_intron MGP_C3HHeJ_T0023504.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181406690 181415240 - MGP_C3HHeJ_P0023504 Cep170 protein_coding protein_coding MGP_C3HHeJ_T0023505.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181411364 181446952 - MGP_C3HHeJ_P0023505 Cep170 protein_coding protein_coding MGP_C3HHeJ_T0023506.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181421328 181440058 - Cep170 protein_coding retained_intron MGP_C3HHeJ_T0023507.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181421405 181440052 - MGP_C3HHeJ_P0023507 Cep170 protein_coding protein_coding MGP_C3HHeJ_T0000748.1 MGP_C3HHeJ_G0000691.1 mouse_genomes_project 1 188049807 188053258 + TEC TEC MGP_C3HHeJ_T0000335.1 MGP_C3HHeJ_G0000285.1 mouse_genomes_project 1 4279860 4283890 + TEC TEC MGP_C3HHeJ_T0012002.1 MGP_C3HHeJ_G0010106.1 mouse_genomes_project 1 71345115 71345890 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018659.1 MGP_C3HHeJ_G0015606.1 mouse_genomes_project 1 7278345 7376086 - MGP_C3HHeJ_P0018659 Arfgef1 protein_coding protein_coding MGP_C3HHeJ_T0018660.1 MGP_C3HHeJ_G0015606.1 mouse_genomes_project 1 7279464 7282479 - Arfgef1 protein_coding retained_intron MGP_C3HHeJ_T0018661.1 MGP_C3HHeJ_G0015606.1 mouse_genomes_project 1 7288177 7295322 - Arfgef1 protein_coding retained_intron MGP_C3HHeJ_T0018662.1 MGP_C3HHeJ_G0015606.1 mouse_genomes_project 1 7297202 7300856 - Arfgef1 protein_coding retained_intron MGP_C3HHeJ_T0018663.1 MGP_C3HHeJ_G0015606.1 mouse_genomes_project 1 7301549 7302612 - Arfgef1 protein_coding retained_intron MGP_C3HHeJ_T0018664.1 MGP_C3HHeJ_G0015606.1 mouse_genomes_project 1 7315516 7376086 - MGP_C3HHeJ_P0018664 Arfgef1 protein_coding protein_coding MGP_C3HHeJ_T0018665.1 MGP_C3HHeJ_G0015606.1 mouse_genomes_project 1 7352405 7353567 - Arfgef1 protein_coding retained_intron MGP_C3HHeJ_T0018666.1 MGP_C3HHeJ_G0015606.1 mouse_genomes_project 1 7352620 7357688 - Arfgef1 protein_coding retained_intron MGP_C3HHeJ_T0011962.1 MGP_C3HHeJ_G0010066.1 mouse_genomes_project 1 60343733 60343983 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019366.1 MGP_C3HHeJ_G0015752.1 mouse_genomes_project 1 42387321 42399283 + MGP_C3HHeJ_P0019366 1500015O10Rik protein_coding protein_coding MGP_C3HHeJ_T0011985.1 MGP_C3HHeJ_G0010089.1 mouse_genomes_project 1 64366062 64366280 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016862.1 MGP_C3HHeJ_G0014886.1 mouse_genomes_project 1 176855315 176868140 - 4933439K11Rik processed_transcript lincRNA MGP_C3HHeJ_T0016863.1 MGP_C3HHeJ_G0014886.1 mouse_genomes_project 1 176858829 176868277 - 4933439K11Rik processed_transcript lincRNA MGP_C3HHeJ_T0016864.1 MGP_C3HHeJ_G0014886.1 mouse_genomes_project 1 176866720 176875568 - 4933439K11Rik processed_transcript antisense MGP_C3HHeJ_T0009447.1 MGP_C3HHeJ_G0007580.1 mouse_genomes_project 1 138037937 138038018 - Mir1231 miRNA miRNA MGP_C3HHeJ_T0101594.1 MGP_C3HHeJ_G0039560.1 mouse_genomes_project 1 177483677 177484860 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098568.1 MGP_C3HHeJ_G0036766.1 mouse_genomes_project 1 107006908 107039445 - sense_overlapping sense_overlapping MGP_C3HHeJ_T0000595.1 MGP_C3HHeJ_G0000542.1 mouse_genomes_project 1 133102701 133104392 - TEC TEC MGP_C3HHeJ_T0023386.1 MGP_C3HHeJ_G0016566.1 mouse_genomes_project 1 177546239 177547273 + MGP_C3HHeJ_P0023386 Olfr1404 protein_coding protein_coding MGP_C3HHeJ_T0012064.1 MGP_C3HHeJ_G0010168.1 mouse_genomes_project 1 102108084 102108751 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012071.1 MGP_C3HHeJ_G0010175.1 mouse_genomes_project 1 105892588 105892895 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000611.1 MGP_C3HHeJ_G0000557.1 mouse_genomes_project 1 138110005 138112251 - TEC TEC MGP_C3HHeJ_T0098632.1 MGP_C3HHeJ_G0036826.1 mouse_genomes_project 1 88058368 88058469 + Gm26187 snRNA snRNA MGP_C3HHeJ_T0020221.1 MGP_C3HHeJ_G0015910.1 mouse_genomes_project 1 74452825 74459767 + MGP_C3HHeJ_P0020221 Cxcr2 protein_coding protein_coding MGP_C3HHeJ_T0011818.1 MGP_C3HHeJ_G0009922.1 mouse_genomes_project 1 16804580 16805052 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012046.1 MGP_C3HHeJ_G0010150.1 mouse_genomes_project 1 92557983 92560101 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101337.1 MGP_C3HHeJ_G0039415.1 mouse_genomes_project 1 98721112 98834664 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101338.1 MGP_C3HHeJ_G0039415.1 mouse_genomes_project 1 98824395 98941746 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0097969.1 MGP_C3HHeJ_G0036181.1 mouse_genomes_project 1 152947280 152947415 + n-R5s219 rRNA rRNA MGP_C3HHeJ_T0005569.1 MGP_C3HHeJ_G0004680.1 mouse_genomes_project 1 4514762 4520229 - lincRNA retained_intron MGP_C3HHeJ_T0005888.1 MGP_C3HHeJ_G0004925.1 mouse_genomes_project 1 164350655 164353569 + Gm37083 lincRNA lincRNA MGP_C3HHeJ_T0099835.1 MGP_C3HHeJ_G0038029.1 mouse_genomes_project 1 29302265 29302392 - Gm26145 snoRNA snoRNA MGP_C3HHeJ_T0023857.1 MGP_C3HHeJ_G0016682.1 mouse_genomes_project 1 192182799 192186011 + MGP_C3HHeJ_P0023857 D1Pas1 protein_coding protein_coding MGP_C3HHeJ_T0005859.1 MGP_C3HHeJ_G0004904.1 mouse_genomes_project 1 152198522 152222777 + Gm29020 lincRNA lincRNA MGP_C3HHeJ_T0005984.1 MGP_C3HHeJ_G0005001.1 mouse_genomes_project 1 196902033 196905029 - Gm37432 lincRNA lincRNA MGP_C3HHeJ_T0021876.1 MGP_C3HHeJ_G0016252.1 mouse_genomes_project 1 135787421 135807930 + MGP_C3HHeJ_P0021876 protein_coding protein_coding MGP_C3HHeJ_T0021877.1 MGP_C3HHeJ_G0016252.1 mouse_genomes_project 1 135787421 135807964 + MGP_C3HHeJ_P0021877 protein_coding protein_coding MGP_C3HHeJ_T0021882.1 MGP_C3HHeJ_G0016252.1 mouse_genomes_project 1 135802236 135807964 + MGP_C3HHeJ_P0021882 protein_coding protein_coding MGP_C3HHeJ_T0002811.1 MGP_C3HHeJ_G0002656.1 mouse_genomes_project 1 130197617 130205543 + Gm28800 antisense antisense MGP_C3HHeJ_T0012060.1 MGP_C3HHeJ_G0010164.1 mouse_genomes_project 1 101468455 101469019 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000622.1 MGP_C3HHeJ_G0000567.1 mouse_genomes_project 1 140642637 140646650 + TEC TEC MGP_C3HHeJ_T0000682.1 MGP_C3HHeJ_G0000627.1 mouse_genomes_project 1 164140171 164142251 - TEC TEC MGP_C3HHeJ_T0009439.1 MGP_C3HHeJ_G0007572.1 mouse_genomes_project 1 108227892 108228028 - Mir3473f miRNA miRNA MGP_C3HHeJ_T0000661.1 MGP_C3HHeJ_G0000606.1 mouse_genomes_project 1 159377843 159381641 - TEC TEC MGP_C3HHeJ_T0098261.1 MGP_C3HHeJ_G0036473.1 mouse_genomes_project 1 129557143 129557273 + Gm23370 scaRNA scaRNA MGP_C3HHeJ_T0020898.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88578089 88594682 + MGP_C3HHeJ_P0020898 Atg16l1 protein_coding protein_coding MGP_C3HHeJ_T0020899.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88578232 88619755 + MGP_C3HHeJ_P0020899 Atg16l1 protein_coding protein_coding MGP_C3HHeJ_T0020900.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88578275 88592685 + Atg16l1 protein_coding retained_intron MGP_C3HHeJ_T0020901.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88578295 88613526 + Atg16l1 protein_coding retained_intron MGP_C3HHeJ_T0020902.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88578295 88619749 + MGP_C3HHeJ_P0020902 Atg16l1 protein_coding protein_coding MGP_C3HHeJ_T0020903.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88578305 88619752 + MGP_C3HHeJ_P0020903 Atg16l1 protein_coding protein_coding MGP_C3HHeJ_T0020904.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88578307 88619752 + Atg16l1 protein_coding retained_intron MGP_C3HHeJ_T0020905.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88578312 88590671 + Atg16l1 protein_coding retained_intron MGP_C3HHeJ_T0020906.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88589588 88599896 + Atg16l1 protein_coding retained_intron MGP_C3HHeJ_T0020907.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88600318 88603712 + Atg16l1 protein_coding retained_intron MGP_C3HHeJ_T0020908.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88603211 88615889 + Atg16l1 protein_coding retained_intron MGP_C3HHeJ_T0000724.1 MGP_C3HHeJ_G0000669.1 mouse_genomes_project 1 181710991 181712292 - TEC TEC MGP_C3HHeJ_T0011151.1 MGP_C3HHeJ_G0009284.1 mouse_genomes_project 1 49743927 49744241 + Gm25843 misc_RNA misc_RNA MGP_C3HHeJ_T0005957.1 MGP_C3HHeJ_G0004978.1 mouse_genomes_project 1 189652560 189685182 - 1700112H15Rik lincRNA lincRNA MGP_C3HHeJ_T0021602.1 MGP_C3HHeJ_G0016193.1 mouse_genomes_project 1 130115373 130182005 + MGP_C3HHeJ_P0021602 Rab3gap1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0021603.1 MGP_C3HHeJ_G0016193.1 mouse_genomes_project 1 130115410 130181997 + MGP_C3HHeJ_P0021603 Rab3gap1 protein_coding protein_coding MGP_C3HHeJ_T0021604.1 MGP_C3HHeJ_G0016193.1 mouse_genomes_project 1 130115439 130140674 + Rab3gap1 protein_coding retained_intron MGP_C3HHeJ_T0021605.1 MGP_C3HHeJ_G0016193.1 mouse_genomes_project 1 130137564 130142577 + Rab3gap1 protein_coding retained_intron MGP_C3HHeJ_T0021606.1 MGP_C3HHeJ_G0016193.1 mouse_genomes_project 1 130161389 130164583 + Rab3gap1 protein_coding retained_intron MGP_C3HHeJ_T0021607.1 MGP_C3HHeJ_G0016193.1 mouse_genomes_project 1 130176344 130181041 + Rab3gap1 protein_coding processed_transcript MGP_C3HHeJ_T0021016.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92058451 92171965 + MGP_C3HHeJ_P0021016 Lrrfip1 protein_coding protein_coding MGP_C3HHeJ_T0021017.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92058491 92187904 + MGP_C3HHeJ_P0021017 Lrrfip1 protein_coding protein_coding MGP_C3HHeJ_T0021018.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92058493 92194420 + MGP_C3HHeJ_P0021018 Lrrfip1 protein_coding protein_coding MGP_C3HHeJ_T0021019.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92113146 92194424 + MGP_C3HHeJ_P0021019 Lrrfip1 protein_coding protein_coding MGP_C3HHeJ_T0021020.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92113156 92182680 + MGP_C3HHeJ_P0021020 Lrrfip1 protein_coding protein_coding MGP_C3HHeJ_T0021021.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92113209 92163926 + MGP_C3HHeJ_P0021021 Lrrfip1 protein_coding protein_coding MGP_C3HHeJ_T0021022.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92113209 92194398 + MGP_C3HHeJ_P0021022 Lrrfip1 protein_coding protein_coding MGP_C3HHeJ_T0021023.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92113288 92193767 + MGP_C3HHeJ_P0021023 Lrrfip1 protein_coding protein_coding MGP_C3HHeJ_T0021024.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92175517 92182286 + Lrrfip1 protein_coding processed_transcript MGP_C3HHeJ_T0021025.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92175536 92180217 + Lrrfip1 protein_coding processed_transcript MGP_C3HHeJ_T0021026.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92185324 92187890 + Lrrfip1 protein_coding processed_transcript MGP_C3HHeJ_T0021027.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92190744 92193658 + Lrrfip1 protein_coding retained_intron MGP_C3HHeJ_T0000532.1 MGP_C3HHeJ_G0000479.1 mouse_genomes_project 1 91248194 91249561 - TEC TEC MGP_C3HHeJ_T0012205.1 MGP_C3HHeJ_G0010309.1 mouse_genomes_project 1 162901233 162901443 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018917.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28775973 28846597 - MGP_C3HHeJ_P0018917 Phf3 protein_coding protein_coding MGP_C3HHeJ_T0018918.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28775976 28836595 - MGP_C3HHeJ_P0018918 Phf3 protein_coding protein_coding MGP_C3HHeJ_T0018919.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28777180 28789532 - MGP_C3HHeJ_P0018919 Phf3 protein_coding protein_coding MGP_C3HHeJ_T0018920.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28779824 28787929 - Phf3 protein_coding retained_intron MGP_C3HHeJ_T0018921.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28790723 28792354 - Phf3 protein_coding retained_intron MGP_C3HHeJ_T0018922.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28792383 28846707 - Phf3 protein_coding retained_intron MGP_C3HHeJ_T0018923.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28794106 28846939 - Phf3 protein_coding retained_intron MGP_C3HHeJ_T0018924.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28799734 28846816 - MGP_C3HHeJ_P0018924 Phf3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018925.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28800565 28803369 - Phf3 protein_coding retained_intron MGP_C3HHeJ_T0018926.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28803942 28836409 - Phf3 protein_coding processed_transcript MGP_C3HHeJ_T0018927.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28808953 28810268 - Phf3 protein_coding retained_intron MGP_C3HHeJ_T0018928.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28810729 28846912 - MGP_C3HHeJ_P0018928 Phf3 protein_coding protein_coding MGP_C3HHeJ_T0018929.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28836408 28846264 - MGP_C3HHeJ_P0018929 Phf3 protein_coding protein_coding MGP_C3HHeJ_T0018930.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28845666 28846487 - Phf3 protein_coding retained_intron MGP_C3HHeJ_T0000426.1 MGP_C3HHeJ_G0000373.1 mouse_genomes_project 1 38551415 38554486 + TEC TEC MGP_C3HHeJ_T0019182.1 MGP_C3HHeJ_G0015711.1 mouse_genomes_project 1 35969338 35982850 - MGP_C3HHeJ_P0019182 2010300C02Rik protein_coding protein_coding MGP_C3HHeJ_T0019183.1 MGP_C3HHeJ_G0015711.1 mouse_genomes_project 1 35969338 36080827 - MGP_C3HHeJ_P0019183 2010300C02Rik protein_coding protein_coding MGP_C3HHeJ_T0019184.1 MGP_C3HHeJ_G0015711.1 mouse_genomes_project 1 35996041 36080537 - MGP_C3HHeJ_P0019184 2010300C02Rik protein_coding protein_coding MGP_C3HHeJ_T0099903.1 MGP_C3HHeJ_G0038097.1 mouse_genomes_project 1 164590310 164590394 + Mir5117 snoRNA snoRNA MGP_C3HHeJ_T0099895.1 MGP_C3HHeJ_G0038089.1 mouse_genomes_project 1 163457310 163457420 - Gm24719 snoRNA snoRNA MGP_C3HHeJ_T0012027.1 MGP_C3HHeJ_G0010131.1 mouse_genomes_project 1 83625986 83626358 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000729.1 MGP_C3HHeJ_G0000674.1 mouse_genomes_project 1 183145336 183145930 - TEC TEC MGP_C3HHeJ_T0000730.1 MGP_C3HHeJ_G0000674.1 mouse_genomes_project 1 183145382 183145928 - TEC pseudogene MGP_C3HHeJ_T0098605.1 MGP_C3HHeJ_G0036799.1 mouse_genomes_project 1 30312577 30312684 - Gm25814 snRNA snRNA MGP_C3HHeJ_T0099906.1 MGP_C3HHeJ_G0038100.1 mouse_genomes_project 1 164591041 164591118 + Snord47 snoRNA snoRNA MGP_C3HHeJ_T0023265.1 MGP_C3HHeJ_G0016535.1 mouse_genomes_project 1 176136811 176163410 + Cd84 protein_coding processed_transcript MGP_C3HHeJ_T0023266.1 MGP_C3HHeJ_G0016535.1 mouse_genomes_project 1 176137653 176152299 + MGP_C3HHeJ_P0023266 Cd84 protein_coding protein_coding MGP_C3HHeJ_T0023267.1 MGP_C3HHeJ_G0016535.1 mouse_genomes_project 1 176137721 176174049 + MGP_C3HHeJ_P0023267 Cd84 protein_coding protein_coding MGP_C3HHeJ_T0011814.1 MGP_C3HHeJ_G0009918.1 mouse_genomes_project 1 15704101 15705086 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020047.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65121107 65140652 + Pikfyve protein_coding retained_intron MGP_C3HHeJ_T0020048.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65121113 65182870 + MGP_C3HHeJ_P0020048 Pikfyve protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020049.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65121117 65162027 + Pikfyve protein_coding retained_intron MGP_C3HHeJ_T0020050.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65121118 65126886 + Pikfyve protein_coding retained_intron MGP_C3HHeJ_T0020051.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65121120 65141120 + Pikfyve protein_coding processed_transcript MGP_C3HHeJ_T0020052.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65121126 65215206 + MGP_C3HHeJ_P0020052 Pikfyve protein_coding protein_coding MGP_C3HHeJ_T0020053.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65121128 65169152 + Pikfyve protein_coding retained_intron MGP_C3HHeJ_T0020054.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65121137 65126590 + MGP_C3HHeJ_P0020054 Pikfyve protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020055.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65121174 65210523 + MGP_C3HHeJ_P0020055 Pikfyve protein_coding protein_coding MGP_C3HHeJ_T0020056.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65131162 65152179 + Pikfyve protein_coding retained_intron MGP_C3HHeJ_T0000500.1 MGP_C3HHeJ_G0000447.1 mouse_genomes_project 1 80762912 80764730 - TEC TEC MGP_C3HHeJ_T0005687.1 MGP_C3HHeJ_G0004766.1 mouse_genomes_project 1 63948180 63951647 + Gm26649 lincRNA lincRNA MGP_C3HHeJ_T0097973.1 MGP_C3HHeJ_G0036185.1 mouse_genomes_project 1 186922765 186922881 - Gm26004 rRNA rRNA MGP_C3HHeJ_T0000624.1 MGP_C3HHeJ_G0000569.1 mouse_genomes_project 1 140682399 140683583 + TEC TEC MGP_C3HHeJ_T0101539.1 MGP_C3HHeJ_G0039505.1 mouse_genomes_project 1 15403391 15409459 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0021285.1 MGP_C3HHeJ_G0016123.1 mouse_genomes_project 1 98120852 98225580 - MGP_C3HHeJ_P0021285 Slco4c1 protein_coding protein_coding MGP_C3HHeJ_T0002892.1 MGP_C3HHeJ_G0002719.1 mouse_genomes_project 1 176626404 176627072 + Gm36937 antisense antisense MGP_C3HHeJ_T0020828.1 MGP_C3HHeJ_G0016023.1 mouse_genomes_project 1 87951877 87960038 - MGP_C3HHeJ_P0020828 Ecel1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0020829.1 MGP_C3HHeJ_G0016023.1 mouse_genomes_project 1 87952108 87953143 - Ecel1 protein_coding retained_intron MGP_C3HHeJ_T0020830.1 MGP_C3HHeJ_G0016023.1 mouse_genomes_project 1 87959244 87959533 - Ecel1 protein_coding processed_transcript MGP_C3HHeJ_T0021803.1 MGP_C3HHeJ_G0016239.1 mouse_genomes_project 1 134754801 134773274 + MGP_C3HHeJ_P0021803 Nuak2 protein_coding protein_coding MGP_C3HHeJ_T0021804.1 MGP_C3HHeJ_G0016239.1 mouse_genomes_project 1 134754801 134773469 + MGP_C3HHeJ_P0021804 Nuak2 protein_coding protein_coding MGP_C3HHeJ_T0021805.1 MGP_C3HHeJ_G0016239.1 mouse_genomes_project 1 134754840 134756412 + Nuak2 protein_coding processed_transcript MGP_C3HHeJ_T0021806.1 MGP_C3HHeJ_G0016239.1 mouse_genomes_project 1 134767244 134770441 + Nuak2 protein_coding retained_intron MGP_C3HHeJ_T0098654.1 MGP_C3HHeJ_G0036848.1 mouse_genomes_project 1 139344774 139344872 + Gm24086 snRNA snRNA MGP_C3HHeJ_T0000377.1 MGP_C3HHeJ_G0000325.1 mouse_genomes_project 1 22995132 22998558 - TEC TEC MGP_C3HHeJ_T0021801.1 MGP_C3HHeJ_G0016237.1 mouse_genomes_project 1 134663726 134664446 - MGP_C3HHeJ_P0021801 Gm10188 protein_coding protein_coding MGP_C3HHeJ_T0022023.1 MGP_C3HHeJ_G0016286.1 mouse_genomes_project 1 137713530 137724167 + MGP_C3HHeJ_P0022023 Arl8a protein_coding protein_coding MGP_C3HHeJ_T0022024.1 MGP_C3HHeJ_G0016286.1 mouse_genomes_project 1 137714375 137724167 + MGP_C3HHeJ_P0022024 Arl8a protein_coding protein_coding MGP_C3HHeJ_T0022025.1 MGP_C3HHeJ_G0016286.1 mouse_genomes_project 1 137718598 137720807 + Arl8a protein_coding retained_intron MGP_C3HHeJ_T0022026.1 MGP_C3HHeJ_G0016286.1 mouse_genomes_project 1 137720693 137723211 + Arl8a protein_coding retained_intron MGP_C3HHeJ_T0011927.1 MGP_C3HHeJ_G0010031.1 mouse_genomes_project 1 49223065 49224203 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021372.1 MGP_C3HHeJ_G0016141.1 mouse_genomes_project 1 108551065 108575172 + MGP_C3HHeJ_P0021372 Serpinb5 protein_coding protein_coding MGP_C3HHeJ_T0021373.1 MGP_C3HHeJ_G0016141.1 mouse_genomes_project 1 108551066 108572167 + MGP_C3HHeJ_P0021373 Serpinb5 protein_coding protein_coding MGP_C3HHeJ_T0021374.1 MGP_C3HHeJ_G0016141.1 mouse_genomes_project 1 108551095 108575172 + MGP_C3HHeJ_P0021374 Serpinb5 protein_coding protein_coding MGP_C3HHeJ_T0021375.1 MGP_C3HHeJ_G0016141.1 mouse_genomes_project 1 108562044 108575171 + MGP_C3HHeJ_P0021375 Serpinb5 protein_coding protein_coding MGP_C3HHeJ_T0012036.1 MGP_C3HHeJ_G0010140.1 mouse_genomes_project 1 87527009 87527431 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098330.1 MGP_C3HHeJ_G0036541.1 mouse_genomes_project 1 155936515 155956950 - Gm28792 sense_intronic sense_intronic MGP_C3HHeJ_T0012246.1 MGP_C3HHeJ_G0010350.1 mouse_genomes_project 1 186079788 186080435 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019620.1 MGP_C3HHeJ_G0015798.1 mouse_genomes_project 1 54465380 54512861 - MGP_C3HHeJ_P0019620 Sf3b1 protein_coding protein_coding MGP_C3HHeJ_T0019621.1 MGP_C3HHeJ_G0015798.1 mouse_genomes_project 1 54465384 54471327 - Sf3b1 protein_coding retained_intron MGP_C3HHeJ_T0019622.1 MGP_C3HHeJ_G0015798.1 mouse_genomes_project 1 54469164 54472753 - Sf3b1 protein_coding retained_intron MGP_C3HHeJ_T0019623.1 MGP_C3HHeJ_G0015798.1 mouse_genomes_project 1 54484025 54512844 - Sf3b1 protein_coding retained_intron MGP_C3HHeJ_T0019624.1 MGP_C3HHeJ_G0015798.1 mouse_genomes_project 1 54488540 54495995 - Sf3b1 protein_coding retained_intron MGP_C3HHeJ_T0019625.1 MGP_C3HHeJ_G0015798.1 mouse_genomes_project 1 54493053 54512774 - MGP_C3HHeJ_P0019625 Sf3b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019626.1 MGP_C3HHeJ_G0015798.1 mouse_genomes_project 1 54496602 54512753 - Sf3b1 protein_coding processed_transcript MGP_C3HHeJ_T0019627.1 MGP_C3HHeJ_G0015798.1 mouse_genomes_project 1 54496732 54497731 - Sf3b1 protein_coding retained_intron MGP_C3HHeJ_T0012236.1 MGP_C3HHeJ_G0010340.1 mouse_genomes_project 1 180963519 180964036 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000649.1 MGP_C3HHeJ_G0000594.1 mouse_genomes_project 1 154231367 154233463 + TEC TEC MGP_C3HHeJ_T0019724.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58022174 58037159 - Clk1 protein_coding retained_intron MGP_C3HHeJ_T0019725.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58023985 58024847 - Clk1 protein_coding processed_transcript MGP_C3HHeJ_T0019726.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58023985 58025423 - Clk1 protein_coding processed_transcript MGP_C3HHeJ_T0019727.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58023985 58029029 - Clk1 protein_coding retained_intron MGP_C3HHeJ_T0019728.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58023985 58037159 - MGP_C3HHeJ_P0019728 Clk1 protein_coding protein_coding MGP_C3HHeJ_T0019729.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58023985 58037159 - MGP_C3HHeJ_P0019729 Clk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019730.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58023985 58037159 - MGP_C3HHeJ_P0019730 Clk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019731.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58024301 58025811 - Clk1 protein_coding processed_transcript MGP_C3HHeJ_T0019732.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58026575 58032447 - Clk1 protein_coding retained_intron MGP_C3HHeJ_T0019733.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58026600 58033307 - Clk1 protein_coding retained_intron MGP_C3HHeJ_T0019734.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58028406 58037159 - Clk1 protein_coding retained_intron MGP_C3HHeJ_T0019735.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58029173 58029690 - Clk1 protein_coding retained_intron MGP_C3HHeJ_T0019736.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58033674 58037159 - Clk1 protein_coding retained_intron MGP_C3HHeJ_T0011769.1 MGP_C3HHeJ_G0009873.1 mouse_genomes_project 1 4154785 4156088 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016815.1 MGP_C3HHeJ_G0014873.1 mouse_genomes_project 1 139028136 139031740 - 9230116N13Rik processed_transcript antisense MGP_C3HHeJ_T0016816.1 MGP_C3HHeJ_G0014873.1 mouse_genomes_project 1 139029063 139031715 - 9230116N13Rik processed_transcript retained_intron MGP_C3HHeJ_T0098318.1 MGP_C3HHeJ_G0036530.1 mouse_genomes_project 1 74604109 74606412 + Gm29358 sense_intronic sense_intronic MGP_C3HHeJ_T0098319.1 MGP_C3HHeJ_G0036530.1 mouse_genomes_project 1 74604147 74607374 + Gm29358 sense_intronic sense_intronic MGP_C3HHeJ_T0023488.1 MGP_C3HHeJ_G0016606.1 mouse_genomes_project 1 180575390 180579503 - MGP_C3HHeJ_P0023488 Rbm8a2 protein_coding protein_coding MGP_C3HHeJ_T0020641.1 MGP_C3HHeJ_G0015983.1 mouse_genomes_project 1 82839504 82963409 + MGP_C3HHeJ_P0020641 Rhbdd1 protein_coding protein_coding MGP_C3HHeJ_T0020642.1 MGP_C3HHeJ_G0015983.1 mouse_genomes_project 1 82839694 82842783 + Rhbdd1 protein_coding retained_intron MGP_C3HHeJ_T0020643.1 MGP_C3HHeJ_G0015983.1 mouse_genomes_project 1 82862121 82963409 + MGP_C3HHeJ_P0020643 Rhbdd1 protein_coding protein_coding MGP_C3HHeJ_T0018976.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32081473 32489067 + MGP_C3HHeJ_P0018976 Dst protein_coding protein_coding MGP_C3HHeJ_T0018977.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32081520 32489067 + MGP_C3HHeJ_P0018977 Dst protein_coding unknown_likely_coding MGP_C3HHeJ_T0018978.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32180104 32353182 + MGP_C3HHeJ_P0018978 Dst protein_coding protein_coding MGP_C3HHeJ_T0018979.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32180106 32314247 + MGP_C3HHeJ_P0018979 Dst protein_coding protein_coding MGP_C3HHeJ_T0018980.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32180350 32314248 + MGP_C3HHeJ_P0018980 Dst protein_coding protein_coding MGP_C3HHeJ_T0018981.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32180404 32341525 + Dst protein_coding retained_intron MGP_C3HHeJ_T0018982.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32186023 32490173 + MGP_C3HHeJ_P0018982 Dst protein_coding protein_coding MGP_C3HHeJ_T0018983.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32186023 32490184 + MGP_C3HHeJ_P0018983 Dst protein_coding protein_coding MGP_C3HHeJ_T0018984.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32186036 32490175 + MGP_C3HHeJ_P0018984 Dst protein_coding protein_coding MGP_C3HHeJ_T0018985.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32258162 32292439 + Dst protein_coding retained_intron MGP_C3HHeJ_T0018986.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32297310 32331247 + Dst protein_coding processed_transcript MGP_C3HHeJ_T0018987.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32337068 32489927 + MGP_C3HHeJ_P0018987 Dst protein_coding protein_coding MGP_C3HHeJ_T0018988.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32337143 32371645 + MGP_C3HHeJ_P0018988 Dst protein_coding protein_coding MGP_C3HHeJ_T0018989.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32337143 32362290 + MGP_C3HHeJ_P0018989 Dst protein_coding protein_coding MGP_C3HHeJ_T0018990.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32338731 32342226 + Dst protein_coding retained_intron MGP_C3HHeJ_T0018991.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32357294 32361634 + Dst protein_coding retained_intron MGP_C3HHeJ_T0018992.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32437609 32489927 + MGP_C3HHeJ_P0018992 Dst protein_coding protein_coding MGP_C3HHeJ_T0018993.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32450977 32452700 + Dst protein_coding retained_intron MGP_C3HHeJ_T0018994.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32473900 32484938 + MGP_C3HHeJ_P0018994 Dst protein_coding protein_coding MGP_C3HHeJ_T0018995.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32474891 32488126 + MGP_C3HHeJ_P0018995 Dst protein_coding protein_coding MGP_C3HHeJ_T0009441.1 MGP_C3HHeJ_G0007574.1 mouse_genomes_project 1 130441692 130441762 + Mir128-1 miRNA miRNA MGP_C3HHeJ_T0021954.1 MGP_C3HHeJ_G0016272.1 mouse_genomes_project 1 136819517 136858269 - MGP_C3HHeJ_P0021954 Ppfia4 protein_coding protein_coding MGP_C3HHeJ_T0021955.1 MGP_C3HHeJ_G0016272.1 mouse_genomes_project 1 136819518 136871186 - MGP_C3HHeJ_P0021955 Ppfia4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0021956.1 MGP_C3HHeJ_G0016272.1 mouse_genomes_project 1 136819518 136852617 - MGP_C3HHeJ_P0021956 Ppfia4 protein_coding protein_coding MGP_C3HHeJ_T0021957.1 MGP_C3HHeJ_G0016272.1 mouse_genomes_project 1 136819519 136828724 - Ppfia4 protein_coding processed_transcript MGP_C3HHeJ_T0021958.1 MGP_C3HHeJ_G0016272.1 mouse_genomes_project 1 136819523 136828686 - Ppfia4 protein_coding retained_intron MGP_C3HHeJ_T0021959.1 MGP_C3HHeJ_G0016272.1 mouse_genomes_project 1 136821115 136835484 - Ppfia4 protein_coding retained_intron MGP_C3HHeJ_T0022412.1 MGP_C3HHeJ_G0016361.1 mouse_genomes_project 1 156342587 156410042 - MGP_C3HHeJ_P0022412 Lamc2 protein_coding protein_coding MGP_C3HHeJ_T0022413.1 MGP_C3HHeJ_G0016361.1 mouse_genomes_project 1 156342587 156409642 - MGP_C3HHeJ_P0022413 Lamc2 protein_coding protein_coding MGP_C3HHeJ_T0022414.1 MGP_C3HHeJ_G0016361.1 mouse_genomes_project 1 156344004 156347066 - Lamc2 protein_coding retained_intron MGP_C3HHeJ_T0022415.1 MGP_C3HHeJ_G0016361.1 mouse_genomes_project 1 156345929 156348834 - MGP_C3HHeJ_P0022415 Lamc2 protein_coding protein_coding MGP_C3HHeJ_T0022416.1 MGP_C3HHeJ_G0016361.1 mouse_genomes_project 1 156371123 156373010 - Lamc2 protein_coding retained_intron MGP_C3HHeJ_T0022417.1 MGP_C3HHeJ_G0016361.1 mouse_genomes_project 1 156378232 156410042 - Lamc2 protein_coding retained_intron MGP_C3HHeJ_T0022625.1 MGP_C3HHeJ_G0016399.1 mouse_genomes_project 1 160896260 160967905 + MGP_C3HHeJ_P0022625 Sec16b protein_coding protein_coding MGP_C3HHeJ_T0022626.1 MGP_C3HHeJ_G0016399.1 mouse_genomes_project 1 160896342 160967908 + MGP_C3HHeJ_P0022626 Sec16b protein_coding protein_coding MGP_C3HHeJ_T0022627.1 MGP_C3HHeJ_G0016399.1 mouse_genomes_project 1 160924619 160967905 + MGP_C3HHeJ_P0022627 Sec16b protein_coding protein_coding MGP_C3HHeJ_T0022628.1 MGP_C3HHeJ_G0016399.1 mouse_genomes_project 1 160932003 160961702 + MGP_C3HHeJ_P0022628 Sec16b protein_coding protein_coding MGP_C3HHeJ_T0022629.1 MGP_C3HHeJ_G0016399.1 mouse_genomes_project 1 160936920 160943396 + Sec16b protein_coding retained_intron MGP_C3HHeJ_T0023289.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176382034 176421140 + MGP_C3HHeJ_P0023289 Copa protein_coding protein_coding MGP_C3HHeJ_T0023290.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176382148 176393001 + Copa protein_coding retained_intron MGP_C3HHeJ_T0023291.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176382310 176409681 + MGP_C3HHeJ_P0023291 Copa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023292.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176382336 176403590 + Copa protein_coding retained_intron MGP_C3HHeJ_T0023293.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176382337 176421145 + MGP_C3HHeJ_P0023293 Copa protein_coding protein_coding MGP_C3HHeJ_T0023294.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176394690 176400713 + Copa protein_coding processed_transcript MGP_C3HHeJ_T0023295.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176399184 176405121 + MGP_C3HHeJ_P0023295 Copa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023296.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176410921 176414300 + Copa protein_coding retained_intron MGP_C3HHeJ_T0023297.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176413068 176421143 + Copa protein_coding retained_intron MGP_C3HHeJ_T0023298.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176416949 176418188 + Copa protein_coding retained_intron MGP_C3HHeJ_T0023422.1 MGP_C3HHeJ_G0016581.1 mouse_genomes_project 1 178619510 178621879 + MGP_C3HHeJ_P0023422 Olfr433 protein_coding protein_coding MGP_C3HHeJ_T0011766.1 MGP_C3HHeJ_G0009870.1 mouse_genomes_project 1 4048027 4048057 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009415.1 MGP_C3HHeJ_G0007548.1 mouse_genomes_project 1 74914070 74914147 - Gm25035 miRNA miRNA MGP_C3HHeJ_T0005568.1 MGP_C3HHeJ_G0004679.1 mouse_genomes_project 1 1640253 1643376 - Gm37323 lincRNA lincRNA MGP_C3HHeJ_T0012025.1 MGP_C3HHeJ_G0010129.1 mouse_genomes_project 1 83559594 83561020 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022335.1 MGP_C3HHeJ_G0016346.1 mouse_genomes_project 1 154517441 154537398 + MGP_C3HHeJ_P0022335 Ivns1abp protein_coding protein_coding MGP_C3HHeJ_T0022336.1 MGP_C3HHeJ_G0016346.1 mouse_genomes_project 1 154517473 154529781 + MGP_C3HHeJ_P0022336 Ivns1abp protein_coding protein_coding MGP_C3HHeJ_T0022337.1 MGP_C3HHeJ_G0016346.1 mouse_genomes_project 1 154517482 154537391 + MGP_C3HHeJ_P0022337 Ivns1abp protein_coding protein_coding MGP_C3HHeJ_T0022338.1 MGP_C3HHeJ_G0016346.1 mouse_genomes_project 1 154517548 154536341 + MGP_C3HHeJ_P0022338 Ivns1abp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022339.1 MGP_C3HHeJ_G0016346.1 mouse_genomes_project 1 154534221 154535009 + MGP_C3HHeJ_P0022339 Ivns1abp protein_coding protein_coding MGP_C3HHeJ_T0023081.1 MGP_C3HHeJ_G0016495.1 mouse_genomes_project 1 174139768 174143075 + MGP_C3HHeJ_P0023081 1700015E13Rik protein_coding protein_coding MGP_C3HHeJ_T0000499.1 MGP_C3HHeJ_G0000446.1 mouse_genomes_project 1 80710948 80712631 - TEC TEC MGP_C3HHeJ_T0022525.1 MGP_C3HHeJ_G0016383.1 mouse_genomes_project 1 159197194 159323209 - MGP_C3HHeJ_P0022525 Cep350 protein_coding unknown_likely_coding MGP_C3HHeJ_T0022526.1 MGP_C3HHeJ_G0016383.1 mouse_genomes_project 1 159197200 159323500 - MGP_C3HHeJ_P0022526 Cep350 protein_coding protein_coding MGP_C3HHeJ_T0022527.1 MGP_C3HHeJ_G0016383.1 mouse_genomes_project 1 159200777 159213658 - Cep350 protein_coding processed_transcript MGP_C3HHeJ_T0022528.1 MGP_C3HHeJ_G0016383.1 mouse_genomes_project 1 159215612 159239333 - Cep350 protein_coding processed_transcript MGP_C3HHeJ_T0022529.1 MGP_C3HHeJ_G0016383.1 mouse_genomes_project 1 159221008 159238124 - Cep350 protein_coding processed_transcript MGP_C3HHeJ_T0022530.1 MGP_C3HHeJ_G0016383.1 mouse_genomes_project 1 159287547 159323135 - MGP_C3HHeJ_P0022530 Cep350 protein_coding protein_coding MGP_C3HHeJ_T0022531.1 MGP_C3HHeJ_G0016383.1 mouse_genomes_project 1 159320223 159323429 - Cep350 protein_coding retained_intron MGP_C3HHeJ_T0012260.1 MGP_C3HHeJ_G0010364.1 mouse_genomes_project 1 192282326 192282651 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021119.1 MGP_C3HHeJ_G0016085.1 mouse_genomes_project 1 93717929 93719011 + MGP_C3HHeJ_P0021119 Olfr1413 protein_coding protein_coding MGP_C3HHeJ_T0022766.1 MGP_C3HHeJ_G0016422.1 mouse_genomes_project 1 165519323 165572302 - MGP_C3HHeJ_P0022766 4930558K02Rik protein_coding protein_coding MGP_C3HHeJ_T0022767.1 MGP_C3HHeJ_G0016422.1 mouse_genomes_project 1 165519328 165561883 - 4930558K02Rik protein_coding processed_transcript MGP_C3HHeJ_T0000675.1 MGP_C3HHeJ_G0000620.1 mouse_genomes_project 1 162704173 162707037 + TEC TEC MGP_C3HHeJ_T0020337.1 MGP_C3HHeJ_G0015930.1 mouse_genomes_project 1 75074798 75084806 - MGP_C3HHeJ_P0020337 Prkag3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020338.1 MGP_C3HHeJ_G0015930.1 mouse_genomes_project 1 75076069 75085072 - MGP_C3HHeJ_P0020338 Prkag3 protein_coding protein_coding MGP_C3HHeJ_T0020339.1 MGP_C3HHeJ_G0015930.1 mouse_genomes_project 1 75076069 75084428 - MGP_C3HHeJ_P0020339 Prkag3 protein_coding protein_coding MGP_C3HHeJ_T0020340.1 MGP_C3HHeJ_G0015930.1 mouse_genomes_project 1 75077331 75084718 - MGP_C3HHeJ_P0020340 Prkag3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020341.1 MGP_C3HHeJ_G0015930.1 mouse_genomes_project 1 75083368 75084755 - MGP_C3HHeJ_P0020341 Prkag3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002782.1 MGP_C3HHeJ_G0002634.1 mouse_genomes_project 1 87700261 87858486 - Gm28375 antisense antisense MGP_C3HHeJ_T0011940.1 MGP_C3HHeJ_G0010044.1 mouse_genomes_project 1 54026588 54027167 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097972.1 MGP_C3HHeJ_G0036184.1 mouse_genomes_project 1 169496648 169496766 - Gm24808 rRNA rRNA MGP_C3HHeJ_T0005723.1 MGP_C3HHeJ_G0004791.1 mouse_genomes_project 1 77225165 77366808 - Gm816 lincRNA lincRNA MGP_C3HHeJ_T0098633.1 MGP_C3HHeJ_G0036827.1 mouse_genomes_project 1 88153517 88153624 - Gm22549 snRNA snRNA MGP_C3HHeJ_T0016829.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164587384 164590489 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016830.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164587567 164591502 + Gas5 processed_transcript lincRNA MGP_C3HHeJ_T0016831.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164587889 164591498 + Gas5 processed_transcript lincRNA MGP_C3HHeJ_T0016832.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588027 164591500 + Gas5 processed_transcript lincRNA MGP_C3HHeJ_T0016833.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588123 164591500 + Gas5 processed_transcript lincRNA MGP_C3HHeJ_T0016834.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588123 164590504 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016835.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588123 164591496 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016836.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588126 164590013 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016837.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588126 164591497 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016838.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588126 164591502 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016839.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588126 164591502 + Gas5 processed_transcript lincRNA MGP_C3HHeJ_T0016840.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588127 164591206 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016841.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588128 164590518 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016842.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588132 164589584 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016843.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588138 164591502 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016844.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588144 164591502 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016845.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588146 164591438 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016846.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588148 164591502 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016847.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588979 164589845 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016848.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164589651 164591502 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016849.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164590246 164591495 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016850.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164590267 164591085 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016851.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164590307 164591498 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016852.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164590677 164591500 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016853.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164590739 164591502 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0000443.1 MGP_C3HHeJ_G0000390.1 mouse_genomes_project 1 54387040 54389790 - TEC TEC MGP_C3HHeJ_T0012146.1 MGP_C3HHeJ_G0010250.1 mouse_genomes_project 1 139149466 139151456 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101557.1 MGP_C3HHeJ_G0039523.1 mouse_genomes_project 1 78826860 78827121 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0023817.1 MGP_C3HHeJ_G0016672.1 mouse_genomes_project 1 190011203 190023469 - MGP_C3HHeJ_P0023817 C130074G19Rik protein_coding protein_coding MGP_C3HHeJ_T0000619.1 MGP_C3HHeJ_G0000565.1 mouse_genomes_project 1 140630545 140633861 + TEC TEC MGP_C3HHeJ_T0005920.1 MGP_C3HHeJ_G0004952.1 mouse_genomes_project 1 175349072 175369522 - Gm26641 lincRNA lincRNA MGP_C3HHeJ_T0021556.1 MGP_C3HHeJ_G0016184.1 mouse_genomes_project 1 127743222 127751244 + MGP_C3HHeJ_P0021556 Slc35f5 protein_coding protein_coding MGP_C3HHeJ_T0021557.1 MGP_C3HHeJ_G0016184.1 mouse_genomes_project 1 127743643 127781044 + MGP_C3HHeJ_P0021557 Slc35f5 protein_coding protein_coding MGP_C3HHeJ_T0021558.1 MGP_C3HHeJ_G0016184.1 mouse_genomes_project 1 127769740 127780377 + MGP_C3HHeJ_P0021558 Slc35f5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012074.1 MGP_C3HHeJ_G0010178.1 mouse_genomes_project 1 106237985 106238759 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018998.1 MGP_C3HHeJ_G0015680.1 mouse_genomes_project 1 32628358 32637809 + MGP_C3HHeJ_P0018998 Imp4 protein_coding protein_coding MGP_C3HHeJ_T0018999.1 MGP_C3HHeJ_G0015680.1 mouse_genomes_project 1 32628405 32631016 + Imp4 protein_coding retained_intron MGP_C3HHeJ_T0019000.1 MGP_C3HHeJ_G0015680.1 mouse_genomes_project 1 32628412 32632308 + MGP_C3HHeJ_P0019000 Imp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019001.1 MGP_C3HHeJ_G0015680.1 mouse_genomes_project 1 32628412 32632839 + MGP_C3HHeJ_P0019001 Imp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019002.1 MGP_C3HHeJ_G0015680.1 mouse_genomes_project 1 32628444 32632479 + Imp4 protein_coding processed_transcript MGP_C3HHeJ_T0019003.1 MGP_C3HHeJ_G0015680.1 mouse_genomes_project 1 32628460 32631907 + Imp4 protein_coding processed_transcript MGP_C3HHeJ_T0019004.1 MGP_C3HHeJ_G0015680.1 mouse_genomes_project 1 32628548 32632966 + MGP_C3HHeJ_P0019004 Imp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019005.1 MGP_C3HHeJ_G0015680.1 mouse_genomes_project 1 32636699 32637391 + Imp4 protein_coding processed_transcript MGP_C3HHeJ_T0020117.1 MGP_C3HHeJ_G0015888.1 mouse_genomes_project 1 67118252 67230933 + MGP_C3HHeJ_P0020117 Cps1 protein_coding protein_coding MGP_C3HHeJ_T0011999.1 MGP_C3HHeJ_G0010103.1 mouse_genomes_project 1 69285969 69286355 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012063.1 MGP_C3HHeJ_G0010167.1 mouse_genomes_project 1 102059257 102059810 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022385.1 MGP_C3HHeJ_G0016355.1 mouse_genomes_project 1 155715838 155971411 - MGP_C3HHeJ_P0022385 Rgl1 protein_coding protein_coding MGP_C3HHeJ_T0022386.1 MGP_C3HHeJ_G0016355.1 mouse_genomes_project 1 155716029 155825323 - MGP_C3HHeJ_P0022386 Rgl1 protein_coding protein_coding MGP_C3HHeJ_T0022387.1 MGP_C3HHeJ_G0016355.1 mouse_genomes_project 1 155717824 155971457 - MGP_C3HHeJ_P0022387 Rgl1 protein_coding protein_coding MGP_C3HHeJ_T0022388.1 MGP_C3HHeJ_G0016355.1 mouse_genomes_project 1 155751575 155753112 - Rgl1 protein_coding retained_intron MGP_C3HHeJ_T0022389.1 MGP_C3HHeJ_G0016355.1 mouse_genomes_project 1 155757610 155792870 - Rgl1 protein_coding processed_transcript MGP_C3HHeJ_T0022390.1 MGP_C3HHeJ_G0016355.1 mouse_genomes_project 1 155757610 155825135 - MGP_C3HHeJ_P0022390 Rgl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000602.1 MGP_C3HHeJ_G0000549.1 mouse_genomes_project 1 135598015 135601122 - TEC TEC MGP_C3HHeJ_T0000603.1 MGP_C3HHeJ_G0000549.1 mouse_genomes_project 1 135600519 135601122 - TEC TEC MGP_C3HHeJ_T0101602.1 MGP_C3HHeJ_G0039568.1 mouse_genomes_project 1 178966679 178967777 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009458.1 MGP_C3HHeJ_G0007591.1 mouse_genomes_project 1 166273446 166273509 - Gm27616 miRNA miRNA MGP_C3HHeJ_T0000683.1 MGP_C3HHeJ_G0000628.1 mouse_genomes_project 1 164145191 164148686 - TEC TEC MGP_C3HHeJ_T0000477.1 MGP_C3HHeJ_G0000424.1 mouse_genomes_project 1 68204427 68206794 - TEC TEC MGP_C3HHeJ_T0000677.1 MGP_C3HHeJ_G0000622.1 mouse_genomes_project 1 163070856 163073093 + TEC TEC MGP_C3HHeJ_T0020672.1 MGP_C3HHeJ_G0015989.1 mouse_genomes_project 1 83568713 83594751 - MGP_C3HHeJ_P0020672 Slc19a3 protein_coding protein_coding MGP_C3HHeJ_T0020673.1 MGP_C3HHeJ_G0015989.1 mouse_genomes_project 1 83568714 83576897 - Slc19a3 protein_coding processed_transcript MGP_C3HHeJ_T0020674.1 MGP_C3HHeJ_G0015989.1 mouse_genomes_project 1 83569990 83594734 - MGP_C3HHeJ_P0020674 Slc19a3 protein_coding protein_coding MGP_C3HHeJ_T0101573.1 MGP_C3HHeJ_G0039539.1 mouse_genomes_project 1 104737754 104834469 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0018811.1 MGP_C3HHeJ_G0015638.1 mouse_genomes_project 1 16575747 16635602 + MGP_C3HHeJ_P0018811 Tfap2d protein_coding protein_coding MGP_C3HHeJ_T0018812.1 MGP_C3HHeJ_G0015638.1 mouse_genomes_project 1 16579892 16617762 + Tfap2d protein_coding processed_transcript MGP_C3HHeJ_T0022074.1 MGP_C3HHeJ_G0016297.1 mouse_genomes_project 1 138377518 138384530 + Tnni1 protein_coding processed_transcript MGP_C3HHeJ_T0022075.1 MGP_C3HHeJ_G0016297.1 mouse_genomes_project 1 138382493 138405019 + MGP_C3HHeJ_P0022075 Tnni1 protein_coding protein_coding MGP_C3HHeJ_T0022076.1 MGP_C3HHeJ_G0016297.1 mouse_genomes_project 1 138398870 138410405 + MGP_C3HHeJ_P0022076 Tnni1 protein_coding protein_coding MGP_C3HHeJ_T0022077.1 MGP_C3HHeJ_G0016297.1 mouse_genomes_project 1 138398889 138410050 + Tnni1 protein_coding processed_transcript MGP_C3HHeJ_T0022078.1 MGP_C3HHeJ_G0016297.1 mouse_genomes_project 1 138398889 138410405 + MGP_C3HHeJ_P0022078 Tnni1 protein_coding protein_coding MGP_C3HHeJ_T0022079.1 MGP_C3HHeJ_G0016297.1 mouse_genomes_project 1 138398979 138410116 + MGP_C3HHeJ_P0022079 Tnni1 protein_coding protein_coding MGP_C3HHeJ_T0022080.1 MGP_C3HHeJ_G0016297.1 mouse_genomes_project 1 138398987 138409158 + MGP_C3HHeJ_P0022080 Tnni1 protein_coding protein_coding MGP_C3HHeJ_T0022081.1 MGP_C3HHeJ_G0016297.1 mouse_genomes_project 1 138399301 138410405 + MGP_C3HHeJ_P0022081 Tnni1 protein_coding protein_coding MGP_C3HHeJ_T0022082.1 MGP_C3HHeJ_G0016297.1 mouse_genomes_project 1 138404452 138409332 + MGP_C3HHeJ_P0022082 Tnni1 protein_coding protein_coding MGP_C3HHeJ_T0016785.1 MGP_C3HHeJ_G0014865.1 mouse_genomes_project 1 88927995 89121924 - processed_transcript processed_transcript MGP_C3HHeJ_T0016786.1 MGP_C3HHeJ_G0014865.1 mouse_genomes_project 1 89111960 89121893 - processed_transcript processed_transcript MGP_C3HHeJ_T0021395.1 MGP_C3HHeJ_G0016151.1 mouse_genomes_project 1 109361049 109379249 + MGP_C3HHeJ_P0021395 Serpinb8 protein_coding protein_coding MGP_C3HHeJ_T0021396.1 MGP_C3HHeJ_G0016151.1 mouse_genomes_project 1 109361049 109380824 + MGP_C3HHeJ_P0021396 Serpinb8 protein_coding protein_coding MGP_C3HHeJ_T0021397.1 MGP_C3HHeJ_G0016151.1 mouse_genomes_project 1 109361089 109376497 + Serpinb8 protein_coding retained_intron MGP_C3HHeJ_T0021398.1 MGP_C3HHeJ_G0016151.1 mouse_genomes_project 1 109376226 109377672 + MGP_C3HHeJ_P0021398 Serpinb8 protein_coding protein_coding MGP_C3HHeJ_T0011780.1 MGP_C3HHeJ_G0009884.1 mouse_genomes_project 1 5948883 5949222 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101542.1 MGP_C3HHeJ_G0039508.1 mouse_genomes_project 1 18657573 18667095 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012083.1 MGP_C3HHeJ_G0010187.1 mouse_genomes_project 1 109735683 109735869 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012001.1 MGP_C3HHeJ_G0010105.1 mouse_genomes_project 1 71238644 71239023 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022121.1 MGP_C3HHeJ_G0016305.1 mouse_genomes_project 1 138737281 138783813 + MGP_C3HHeJ_P0022121 Kif21b protein_coding protein_coding MGP_C3HHeJ_T0022122.1 MGP_C3HHeJ_G0016305.1 mouse_genomes_project 1 138737346 138755849 + Kif21b protein_coding retained_intron MGP_C3HHeJ_T0022123.1 MGP_C3HHeJ_G0016305.1 mouse_genomes_project 1 138737614 138783823 + MGP_C3HHeJ_P0022123 Kif21b protein_coding unknown_likely_coding MGP_C3HHeJ_T0022124.1 MGP_C3HHeJ_G0016305.1 mouse_genomes_project 1 138766184 138770871 + MGP_C3HHeJ_P0022124 Kif21b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022125.1 MGP_C3HHeJ_G0016305.1 mouse_genomes_project 1 138768775 138770657 + Kif21b protein_coding retained_intron MGP_C3HHeJ_T0022126.1 MGP_C3HHeJ_G0016305.1 mouse_genomes_project 1 138775128 138778114 + Kif21b protein_coding processed_transcript MGP_C3HHeJ_T0020036.1 MGP_C3HHeJ_G0015875.1 mouse_genomes_project 1 65032834 65053291 - MGP_C3HHeJ_P0020036 Gm28845 protein_coding protein_coding MGP_C3HHeJ_T0021690.1 MGP_C3HHeJ_G0016213.1 mouse_genomes_project 1 133264399 133269780 - MGP_C3HHeJ_P0021690 Il24 protein_coding protein_coding MGP_C3HHeJ_T0021691.1 MGP_C3HHeJ_G0016213.1 mouse_genomes_project 1 133264399 133268322 - MGP_C3HHeJ_P0021691 Il24 protein_coding protein_coding MGP_C3HHeJ_T0021692.1 MGP_C3HHeJ_G0016213.1 mouse_genomes_project 1 133264780 133269665 - MGP_C3HHeJ_P0021692 Il24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021693.1 MGP_C3HHeJ_G0016213.1 mouse_genomes_project 1 133267112 133269739 - MGP_C3HHeJ_P0021693 Il24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000712.1 MGP_C3HHeJ_G0000657.1 mouse_genomes_project 1 176829441 176831008 + TEC TEC MGP_C3HHeJ_T0000452.1 MGP_C3HHeJ_G0000399.1 mouse_genomes_project 1 59579288 59582726 + TEC TEC MGP_C3HHeJ_T0002793.1 MGP_C3HHeJ_G0002645.1 mouse_genomes_project 1 94479317 94490655 + Gm28535 antisense antisense MGP_C3HHeJ_T0005775.1 MGP_C3HHeJ_G0004837.1 mouse_genomes_project 1 97848135 97862321 - Gm29601 lincRNA lincRNA MGP_C3HHeJ_T0022953.1 MGP_C3HHeJ_G0016463.1 mouse_genomes_project 1 169474261 169486119 + MGP_C3HHeJ_P0022953 Creg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022954.1 MGP_C3HHeJ_G0016463.1 mouse_genomes_project 1 169474261 169486119 + MGP_C3HHeJ_P0022954 Creg1 protein_coding protein_coding MGP_C3HHeJ_T0022955.1 MGP_C3HHeJ_G0016463.1 mouse_genomes_project 1 169479964 169484729 + MGP_C3HHeJ_P0022955 Creg1 protein_coding protein_coding MGP_C3HHeJ_T0005666.1 MGP_C3HHeJ_G0004750.1 mouse_genomes_project 1 58123368 58130826 + Gm15834 lincRNA lincRNA MGP_C3HHeJ_T0005667.1 MGP_C3HHeJ_G0004750.1 mouse_genomes_project 1 58123372 58136221 + Gm15834 lincRNA lincRNA MGP_C3HHeJ_T0005668.1 MGP_C3HHeJ_G0004750.1 mouse_genomes_project 1 58123375 58142433 + Gm15834 lincRNA lincRNA MGP_C3HHeJ_T0012211.1 MGP_C3HHeJ_G0010315.1 mouse_genomes_project 1 166224790 166225501 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022448.1 MGP_C3HHeJ_G0016368.1 mouse_genomes_project 1 157012318 157027106 + MGP_C3HHeJ_P0022448 Rnasel protein_coding protein_coding MGP_C3HHeJ_T0022449.1 MGP_C3HHeJ_G0016368.1 mouse_genomes_project 1 157015149 157028429 + MGP_C3HHeJ_P0022449 Rnasel protein_coding protein_coding MGP_C3HHeJ_T0022450.1 MGP_C3HHeJ_G0016368.1 mouse_genomes_project 1 157015174 157027170 + MGP_C3HHeJ_P0022450 Rnasel protein_coding protein_coding MGP_C3HHeJ_T0022451.1 MGP_C3HHeJ_G0016368.1 mouse_genomes_project 1 157015190 157026953 + Rnasel protein_coding retained_intron MGP_C3HHeJ_T0022452.1 MGP_C3HHeJ_G0016368.1 mouse_genomes_project 1 157021769 157026953 + Rnasel protein_coding processed_transcript MGP_C3HHeJ_T0021933.1 MGP_C3HHeJ_G0016265.1 mouse_genomes_project 1 136549610 136560591 + MGP_C3HHeJ_P0021933 Fmod protein_coding protein_coding MGP_C3HHeJ_T0021934.1 MGP_C3HHeJ_G0016265.1 mouse_genomes_project 1 136549852 136552831 + MGP_C3HHeJ_P0021934 Fmod protein_coding protein_coding MGP_C3HHeJ_T0099909.1 MGP_C3HHeJ_G0038103.1 mouse_genomes_project 1 166718905 166719027 + Gm22434 snoRNA snoRNA MGP_C3HHeJ_T0000631.1 MGP_C3HHeJ_G0000576.1 mouse_genomes_project 1 141802519 141804980 + TEC TEC MGP_C3HHeJ_T0000385.1 MGP_C3HHeJ_G0000333.1 mouse_genomes_project 1 23401793 23405189 - TEC TEC MGP_C3HHeJ_T0005725.1 MGP_C3HHeJ_G0004793.1 mouse_genomes_project 1 78312433 78347640 - Gm28387 lincRNA lincRNA MGP_C3HHeJ_T0011884.1 MGP_C3HHeJ_G0009988.1 mouse_genomes_project 1 36875864 36876393 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020640.1 MGP_C3HHeJ_G0015982.1 mouse_genomes_project 1 82753970 82756792 + MGP_C3HHeJ_P0020640 Gm9747 protein_coding protein_coding MGP_C3HHeJ_T0005693.1 MGP_C3HHeJ_G0004772.1 mouse_genomes_project 1 68108248 68109769 + Gm15671 lincRNA lincRNA MGP_C3HHeJ_T0000456.1 MGP_C3HHeJ_G0000403.1 mouse_genomes_project 1 60422350 60423780 - TEC TEC MGP_C3HHeJ_T0012099.1 MGP_C3HHeJ_G0010203.1 mouse_genomes_project 1 114846723 114848113 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023972.1 MGP_C3HHeJ_G0016702.1 mouse_genomes_project 1 196553741 196568346 - MGP_C3HHeJ_P0023972 Atf3 protein_coding protein_coding MGP_C3HHeJ_T0023973.1 MGP_C3HHeJ_G0016702.1 mouse_genomes_project 1 196553741 196605209 - MGP_C3HHeJ_P0023973 Atf3 protein_coding protein_coding MGP_C3HHeJ_T0023974.1 MGP_C3HHeJ_G0016702.1 mouse_genomes_project 1 196554870 196568114 - Atf3 protein_coding processed_transcript MGP_C3HHeJ_T0023080.1 MGP_C3HHeJ_G0016494.1 mouse_genomes_project 1 174133711 174161468 - Nos1ap protein_coding processed_transcript MGP_C3HHeJ_T0023082.1 MGP_C3HHeJ_G0016494.1 mouse_genomes_project 1 174151298 174441553 - MGP_C3HHeJ_P0023082 Nos1ap protein_coding protein_coding MGP_C3HHeJ_T0023083.1 MGP_C3HHeJ_G0016494.1 mouse_genomes_project 1 174151338 174154615 - Nos1ap protein_coding retained_intron MGP_C3HHeJ_T0023084.1 MGP_C3HHeJ_G0016494.1 mouse_genomes_project 1 174152551 174158178 - Nos1ap protein_coding processed_transcript MGP_C3HHeJ_T0023085.1 MGP_C3HHeJ_G0016494.1 mouse_genomes_project 1 174161280 174441056 - MGP_C3HHeJ_P0023085 Nos1ap protein_coding protein_coding MGP_C3HHeJ_T0023086.1 MGP_C3HHeJ_G0016494.1 mouse_genomes_project 1 174161426 174440989 - MGP_C3HHeJ_P0023086 Nos1ap protein_coding protein_coding MGP_C3HHeJ_T0023087.1 MGP_C3HHeJ_G0016494.1 mouse_genomes_project 1 174171876 174298112 - Nos1ap protein_coding processed_transcript MGP_C3HHeJ_T0023088.1 MGP_C3HHeJ_G0016494.1 mouse_genomes_project 1 174208956 174441541 - Nos1ap protein_coding retained_intron MGP_C3HHeJ_T0022918.1 MGP_C3HHeJ_G0016457.1 mouse_genomes_project 1 168987598 169013568 + MGP_C3HHeJ_P0022918 Gpr161 protein_coding protein_coding MGP_C3HHeJ_T0022919.1 MGP_C3HHeJ_G0016457.1 mouse_genomes_project 1 168994419 169018650 + MGP_C3HHeJ_P0022919 Gpr161 protein_coding protein_coding MGP_C3HHeJ_T0101579.1 MGP_C3HHeJ_G0039545.1 mouse_genomes_project 1 109031847 109046703 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0022684.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163731878 163872276 - MGP_C3HHeJ_P0022684 Rabgap1l protein_coding protein_coding MGP_C3HHeJ_T0022685.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163738758 163744566 - Rabgap1l protein_coding retained_intron MGP_C3HHeJ_T0022686.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163739274 163767609 - MGP_C3HHeJ_P0022686 Rabgap1l protein_coding protein_coding MGP_C3HHeJ_T0022687.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163739326 163824807 - MGP_C3HHeJ_P0022687 Rabgap1l protein_coding protein_coding MGP_C3HHeJ_T0022688.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163739376 163803945 - Rabgap1l protein_coding processed_transcript MGP_C3HHeJ_T0022689.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163750050 163764155 - Rabgap1l protein_coding retained_intron MGP_C3HHeJ_T0022690.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163764138 163766922 - Rabgap1l protein_coding processed_transcript MGP_C3HHeJ_T0022691.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163772733 163826639 - MGP_C3HHeJ_P0022691 Rabgap1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022692.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163773094 163971371 - MGP_C3HHeJ_P0022692 Rabgap1l protein_coding protein_coding MGP_C3HHeJ_T0022693.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163773366 164344912 - MGP_C3HHeJ_P0022693 Rabgap1l protein_coding protein_coding MGP_C3HHeJ_T0022694.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163800489 163804132 - Rabgap1l protein_coding processed_transcript MGP_C3HHeJ_T0022695.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163805211 163810831 - Rabgap1l protein_coding processed_transcript MGP_C3HHeJ_T0022696.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163806923 163825245 - Rabgap1l protein_coding processed_transcript MGP_C3HHeJ_T0022697.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163971103 163986051 - Rabgap1l protein_coding retained_intron MGP_C3HHeJ_T0022698.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 164219432 164344904 - MGP_C3HHeJ_P0022698 Rabgap1l protein_coding protein_coding MGP_C3HHeJ_T0022699.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 164283960 164345176 - MGP_C3HHeJ_P0022699 Rabgap1l protein_coding protein_coding MGP_C3HHeJ_T0019469.1 MGP_C3HHeJ_G0015774.1 mouse_genomes_project 1 50689818 50704629 - MGP_C3HHeJ_P0019469 Nabp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019470.1 MGP_C3HHeJ_G0015774.1 mouse_genomes_project 1 50689963 50704296 - MGP_C3HHeJ_P0019470 Nabp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019471.1 MGP_C3HHeJ_G0015774.1 mouse_genomes_project 1 50693814 50704629 - MGP_C3HHeJ_P0019471 Nabp1 protein_coding protein_coding MGP_C3HHeJ_T0019472.1 MGP_C3HHeJ_G0015774.1 mouse_genomes_project 1 50695202 50704144 - MGP_C3HHeJ_P0019472 Nabp1 protein_coding protein_coding MGP_C3HHeJ_T0019473.1 MGP_C3HHeJ_G0015774.1 mouse_genomes_project 1 50695296 50697355 - Nabp1 protein_coding retained_intron MGP_C3HHeJ_T0019474.1 MGP_C3HHeJ_G0015774.1 mouse_genomes_project 1 50701820 50704629 - Nabp1 protein_coding retained_intron MGP_C3HHeJ_T0019552.1 MGP_C3HHeJ_G0015784.1 mouse_genomes_project 1 52157695 52197986 - MGP_C3HHeJ_P0019552 1700019D03Rik protein_coding protein_coding MGP_C3HHeJ_T0019553.1 MGP_C3HHeJ_G0015784.1 mouse_genomes_project 1 52157695 52188074 - MGP_C3HHeJ_P0019553 1700019D03Rik protein_coding protein_coding MGP_C3HHeJ_T0019554.1 MGP_C3HHeJ_G0015784.1 mouse_genomes_project 1 52157695 52187568 - MGP_C3HHeJ_P0019554 1700019D03Rik protein_coding protein_coding MGP_C3HHeJ_T0019555.1 MGP_C3HHeJ_G0015784.1 mouse_genomes_project 1 52160646 52251381 - MGP_C3HHeJ_P0019555 1700019D03Rik protein_coding protein_coding MGP_C3HHeJ_T0019556.1 MGP_C3HHeJ_G0015784.1 mouse_genomes_project 1 52160651 52206760 - MGP_C3HHeJ_P0019556 1700019D03Rik protein_coding protein_coding MGP_C3HHeJ_T0019557.1 MGP_C3HHeJ_G0015784.1 mouse_genomes_project 1 52160661 52225769 - MGP_C3HHeJ_P0019557 1700019D03Rik protein_coding protein_coding MGP_C3HHeJ_T0011934.1 MGP_C3HHeJ_G0010038.1 mouse_genomes_project 1 51738403 51739399 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098679.1 MGP_C3HHeJ_G0036873.1 mouse_genomes_project 1 185832382 185832490 + Gm24836 snRNA snRNA MGP_C3HHeJ_T0012195.1 MGP_C3HHeJ_G0010299.1 mouse_genomes_project 1 159207732 159207991 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009480.1 MGP_C3HHeJ_G0007613.1 mouse_genomes_project 1 200539453 200539534 + Mir29b-2 miRNA miRNA MGP_C3HHeJ_T0019941.1 MGP_C3HHeJ_G0015854.1 mouse_genomes_project 1 62806872 62950525 - MGP_C3HHeJ_P0019941 Ino80d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019942.1 MGP_C3HHeJ_G0015854.1 mouse_genomes_project 1 62915219 62972672 - MGP_C3HHeJ_P0019942 Ino80d protein_coding protein_coding MGP_C3HHeJ_T0019943.1 MGP_C3HHeJ_G0015854.1 mouse_genomes_project 1 62917371 62920798 - Ino80d protein_coding retained_intron MGP_C3HHeJ_T0019944.1 MGP_C3HHeJ_G0015854.1 mouse_genomes_project 1 62919386 62972964 - MGP_C3HHeJ_P0019944 Ino80d protein_coding protein_coding MGP_C3HHeJ_T0019945.1 MGP_C3HHeJ_G0015854.1 mouse_genomes_project 1 62919400 62972885 - MGP_C3HHeJ_P0019945 Ino80d protein_coding protein_coding MGP_C3HHeJ_T0099866.1 MGP_C3HHeJ_G0038060.1 mouse_genomes_project 1 95832295 95832364 - Gm23389 snoRNA snoRNA MGP_C3HHeJ_T0000616.1 MGP_C3HHeJ_G0000562.1 mouse_genomes_project 1 140457955 140461682 - TEC TEC MGP_C3HHeJ_T0097961.1 MGP_C3HHeJ_G0036173.1 mouse_genomes_project 1 90560864 90560979 + Gm25180 rRNA rRNA MGP_C3HHeJ_T0005849.1 MGP_C3HHeJ_G0004896.1 mouse_genomes_project 1 140635863 140679269 - Gm26936 lincRNA lincRNA MGP_C3HHeJ_T0005850.1 MGP_C3HHeJ_G0004896.1 mouse_genomes_project 1 140673522 140679244 - Gm26936 lincRNA lincRNA MGP_C3HHeJ_T0022903.1 MGP_C3HHeJ_G0016452.1 mouse_genomes_project 1 168451325 168479307 + MGP_C3HHeJ_P0022903 Dpt protein_coding protein_coding MGP_C3HHeJ_T0022502.1 MGP_C3HHeJ_G0016379.1 mouse_genomes_project 1 158610425 158762022 - MGP_C3HHeJ_P0022502 Xpr1 protein_coding protein_coding MGP_C3HHeJ_T0022503.1 MGP_C3HHeJ_G0016379.1 mouse_genomes_project 1 158613704 158762100 - MGP_C3HHeJ_P0022503 Xpr1 protein_coding protein_coding MGP_C3HHeJ_T0022504.1 MGP_C3HHeJ_G0016379.1 mouse_genomes_project 1 158616905 158647696 - Xpr1 protein_coding retained_intron MGP_C3HHeJ_T0022505.1 MGP_C3HHeJ_G0016379.1 mouse_genomes_project 1 158617390 158762108 - MGP_C3HHeJ_P0022505 Xpr1 protein_coding protein_coding MGP_C3HHeJ_T0022506.1 MGP_C3HHeJ_G0016379.1 mouse_genomes_project 1 158624831 158627575 - Xpr1 protein_coding retained_intron MGP_C3HHeJ_T0022507.1 MGP_C3HHeJ_G0016379.1 mouse_genomes_project 1 158662711 158762088 - Xpr1 protein_coding retained_intron MGP_C3HHeJ_T0022508.1 MGP_C3HHeJ_G0016379.1 mouse_genomes_project 1 158722575 158725654 - Xpr1 protein_coding processed_transcript MGP_C3HHeJ_T0011811.1 MGP_C3HHeJ_G0009915.1 mouse_genomes_project 1 14834271 14834757 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020346.1 MGP_C3HHeJ_G0015934.1 mouse_genomes_project 1 75221206 75225131 - MGP_C3HHeJ_P0020346 Fev protein_coding protein_coding MGP_C3HHeJ_T0020347.1 MGP_C3HHeJ_G0015934.1 mouse_genomes_project 1 75221703 75225034 - MGP_C3HHeJ_P0020347 Fev protein_coding protein_coding MGP_C3HHeJ_T0020348.1 MGP_C3HHeJ_G0015934.1 mouse_genomes_project 1 75222104 75224325 - Fev protein_coding retained_intron MGP_C3HHeJ_T0021385.1 MGP_C3HHeJ_G0016146.1 mouse_genomes_project 1 109013147 109019358 - MGP_C3HHeJ_P0021385 Serpinb3c protein_coding protein_coding MGP_C3HHeJ_T0098322.1 MGP_C3HHeJ_G0036533.1 mouse_genomes_project 1 92911251 92912722 + Gm29101 sense_intronic sense_intronic MGP_C3HHeJ_T0011827.1 MGP_C3HHeJ_G0009931.1 mouse_genomes_project 1 19613353 19613905 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021582.1 MGP_C3HHeJ_G0016189.1 mouse_genomes_project 1 129715566 129907117 - MGP_C3HHeJ_P0021582 Tmem163 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021583.1 MGP_C3HHeJ_G0016189.1 mouse_genomes_project 1 129715578 129907042 - MGP_C3HHeJ_P0021583 Tmem163 protein_coding protein_coding MGP_C3HHeJ_T0021584.1 MGP_C3HHeJ_G0016189.1 mouse_genomes_project 1 129719892 129908568 - MGP_C3HHeJ_P0021584 Tmem163 protein_coding protein_coding MGP_C3HHeJ_T0021585.1 MGP_C3HHeJ_G0016189.1 mouse_genomes_project 1 129720355 129730175 - Tmem163 protein_coding retained_intron MGP_C3HHeJ_T0021586.1 MGP_C3HHeJ_G0016189.1 mouse_genomes_project 1 129720539 129768957 - Tmem163 protein_coding processed_transcript MGP_C3HHeJ_T0023858.1 MGP_C3HHeJ_G0016683.1 mouse_genomes_project 1 192260685 192426955 - MGP_C3HHeJ_P0023858 Spata17 protein_coding protein_coding MGP_C3HHeJ_T0023859.1 MGP_C3HHeJ_G0016683.1 mouse_genomes_project 1 192264448 192426936 - MGP_C3HHeJ_P0023859 Spata17 protein_coding protein_coding MGP_C3HHeJ_T0023860.1 MGP_C3HHeJ_G0016683.1 mouse_genomes_project 1 192320009 192349786 - MGP_C3HHeJ_P0023860 Spata17 protein_coding protein_coding MGP_C3HHeJ_T0023861.1 MGP_C3HHeJ_G0016683.1 mouse_genomes_project 1 192324807 192426927 - MGP_C3HHeJ_P0023861 Spata17 protein_coding protein_coding MGP_C3HHeJ_T0023862.1 MGP_C3HHeJ_G0016683.1 mouse_genomes_project 1 192342173 192349976 - MGP_C3HHeJ_P0023862 Spata17 protein_coding protein_coding MGP_C3HHeJ_T0023863.1 MGP_C3HHeJ_G0016683.1 mouse_genomes_project 1 192342173 192426911 - MGP_C3HHeJ_P0023863 Spata17 protein_coding protein_coding MGP_C3HHeJ_T0023864.1 MGP_C3HHeJ_G0016683.1 mouse_genomes_project 1 192342180 192349963 - Spata17 protein_coding processed_transcript MGP_C3HHeJ_T0023865.1 MGP_C3HHeJ_G0016683.1 mouse_genomes_project 1 192399889 192426936 - Spata17 protein_coding processed_transcript MGP_C3HHeJ_T0000520.1 MGP_C3HHeJ_G0000467.1 mouse_genomes_project 1 87585165 87588625 + TEC TEC MGP_C3HHeJ_T0011932.1 MGP_C3HHeJ_G0010036.1 mouse_genomes_project 1 51166216 51168188 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000592.1 MGP_C3HHeJ_G0000539.1 mouse_genomes_project 1 132243305 132246177 + TEC TEC MGP_C3HHeJ_T0019282.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38352096 38481390 + MGP_C3HHeJ_P0019282 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019283.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38352096 38481390 + MGP_C3HHeJ_P0019283 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019284.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38352353 38353640 + Map4k4 protein_coding retained_intron MGP_C3HHeJ_T0019285.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38352353 38443741 + MGP_C3HHeJ_P0019285 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019286.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38352362 38479838 + MGP_C3HHeJ_P0019286 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019287.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38352362 38479838 + MGP_C3HHeJ_P0019287 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019288.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38352363 38479838 + MGP_C3HHeJ_P0019288 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019289.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38352407 38480053 + MGP_C3HHeJ_P0019289 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019290.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38352413 38480009 + MGP_C3HHeJ_P0019290 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019291.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38416876 38436718 + Map4k4 protein_coding processed_transcript MGP_C3HHeJ_T0019292.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38417571 38430358 + Map4k4 protein_coding processed_transcript MGP_C3HHeJ_T0019293.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38453251 38454218 + Map4k4 protein_coding retained_intron MGP_C3HHeJ_T0019294.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38453549 38460402 + MGP_C3HHeJ_P0019294 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019295.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38453550 38458569 + MGP_C3HHeJ_P0019295 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019296.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38454333 38464351 + MGP_C3HHeJ_P0019296 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019297.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38461052 38463025 + Map4k4 protein_coding retained_intron MGP_C3HHeJ_T0019298.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38467615 38468462 + Map4k4 protein_coding retained_intron MGP_C3HHeJ_T0019299.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38478265 38479509 + Map4k4 protein_coding retained_intron MGP_C3HHeJ_T0023665.1 MGP_C3HHeJ_G0016640.1 mouse_genomes_project 1 185947058 185950417 + MGP_C3HHeJ_P0023665 Lefty1 protein_coding protein_coding MGP_C3HHeJ_T0023666.1 MGP_C3HHeJ_G0016640.1 mouse_genomes_project 1 185948887 185949827 + Lefty1 protein_coding retained_intron MGP_C3HHeJ_T0023269.1 MGP_C3HHeJ_G0016537.1 mouse_genomes_project 1 176207250 176246509 + MGP_C3HHeJ_P0023269 Slamf6 protein_coding protein_coding MGP_C3HHeJ_T0023270.1 MGP_C3HHeJ_G0016537.1 mouse_genomes_project 1 176207272 176235687 + MGP_C3HHeJ_P0023270 Slamf6 protein_coding protein_coding MGP_C3HHeJ_T0023271.1 MGP_C3HHeJ_G0016537.1 mouse_genomes_project 1 176207417 176208414 + Slamf6 protein_coding retained_intron MGP_C3HHeJ_T0023272.1 MGP_C3HHeJ_G0016537.1 mouse_genomes_project 1 176207443 176239883 + MGP_C3HHeJ_P0023272 Slamf6 protein_coding protein_coding MGP_C3HHeJ_T0023273.1 MGP_C3HHeJ_G0016537.1 mouse_genomes_project 1 176209225 176226023 + MGP_C3HHeJ_P0023273 Slamf6 protein_coding protein_coding MGP_C3HHeJ_T0023274.1 MGP_C3HHeJ_G0016537.1 mouse_genomes_project 1 176223440 176226360 + Slamf6 protein_coding retained_intron MGP_C3HHeJ_T0023275.1 MGP_C3HHeJ_G0016537.1 mouse_genomes_project 1 176234403 176240678 + Slamf6 protein_coding processed_transcript MGP_C3HHeJ_T0012124.1 MGP_C3HHeJ_G0010228.1 mouse_genomes_project 1 124907386 124907763 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002750.1 MGP_C3HHeJ_G0002612.1 mouse_genomes_project 1 59292666 59295085 - 1700122D07Rik antisense antisense MGP_C3HHeJ_T0020566.1 MGP_C3HHeJ_G0015965.1 mouse_genomes_project 1 78489074 78586139 - MGP_C3HHeJ_P0020566 Pax3 protein_coding protein_coding MGP_C3HHeJ_T0020567.1 MGP_C3HHeJ_G0015965.1 mouse_genomes_project 1 78489077 78586435 - MGP_C3HHeJ_P0020567 Pax3 protein_coding protein_coding MGP_C3HHeJ_T0020568.1 MGP_C3HHeJ_G0015965.1 mouse_genomes_project 1 78572355 78586414 - Pax3 protein_coding processed_transcript MGP_C3HHeJ_T0022853.1 MGP_C3HHeJ_G0016440.1 mouse_genomes_project 1 167547678 167573277 + MGP_C3HHeJ_P0022853 Scyl3 protein_coding protein_coding MGP_C3HHeJ_T0022854.1 MGP_C3HHeJ_G0016440.1 mouse_genomes_project 1 167548339 167573701 + MGP_C3HHeJ_P0022854 Scyl3 protein_coding protein_coding MGP_C3HHeJ_T0022855.1 MGP_C3HHeJ_G0016440.1 mouse_genomes_project 1 167548364 167573685 + MGP_C3HHeJ_P0022855 Scyl3 protein_coding protein_coding MGP_C3HHeJ_T0022856.1 MGP_C3HHeJ_G0016440.1 mouse_genomes_project 1 167548379 167573684 + MGP_C3HHeJ_P0022856 Scyl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022857.1 MGP_C3HHeJ_G0016440.1 mouse_genomes_project 1 167559689 167573689 + MGP_C3HHeJ_P0022857 Scyl3 protein_coding protein_coding MGP_C3HHeJ_T0022858.1 MGP_C3HHeJ_G0016440.1 mouse_genomes_project 1 167562345 167563419 + Scyl3 protein_coding processed_transcript MGP_C3HHeJ_T0022860.1 MGP_C3HHeJ_G0016440.1 mouse_genomes_project 1 167569787 167572377 + Scyl3 protein_coding retained_intron MGP_C3HHeJ_T0011957.1 MGP_C3HHeJ_G0010061.1 mouse_genomes_project 1 58892897 58894280 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023090.1 MGP_C3HHeJ_G0016497.1 mouse_genomes_project 1 174560647 174740964 - MGP_C3HHeJ_P0023090 Atf6 protein_coding protein_coding MGP_C3HHeJ_T0023091.1 MGP_C3HHeJ_G0016497.1 mouse_genomes_project 1 174654352 174656450 - Atf6 protein_coding retained_intron MGP_C3HHeJ_T0022681.1 MGP_C3HHeJ_G0016408.1 mouse_genomes_project 1 163713922 163725576 - MGP_C3HHeJ_P0022681 Cacybp protein_coding protein_coding MGP_C3HHeJ_T0022682.1 MGP_C3HHeJ_G0016408.1 mouse_genomes_project 1 163718819 163725506 - MGP_C3HHeJ_P0022682 Cacybp protein_coding protein_coding MGP_C3HHeJ_T0022683.1 MGP_C3HHeJ_G0016408.1 mouse_genomes_project 1 163720788 163725427 - Cacybp protein_coding retained_intron MGP_C3HHeJ_T0012167.1 MGP_C3HHeJ_G0010271.1 mouse_genomes_project 1 148107691 148108684 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000405.1 MGP_C3HHeJ_G0000352.1 mouse_genomes_project 1 31828685 31830999 - TEC TEC MGP_C3HHeJ_T0023752.1 MGP_C3HHeJ_G0016659.1 mouse_genomes_project 1 187903296 187997646 + MGP_C3HHeJ_P0023752 Susd4 protein_coding protein_coding MGP_C3HHeJ_T0023753.1 MGP_C3HHeJ_G0016659.1 mouse_genomes_project 1 187903448 188037089 + MGP_C3HHeJ_P0023753 Susd4 protein_coding protein_coding MGP_C3HHeJ_T0023754.1 MGP_C3HHeJ_G0016659.1 mouse_genomes_project 1 187903831 187976023 + MGP_C3HHeJ_P0023754 Susd4 protein_coding protein_coding MGP_C3HHeJ_T0023755.1 MGP_C3HHeJ_G0016659.1 mouse_genomes_project 1 187903992 187976049 + MGP_C3HHeJ_P0023755 Susd4 protein_coding protein_coding MGP_C3HHeJ_T0023756.1 MGP_C3HHeJ_G0016659.1 mouse_genomes_project 1 187904331 188038448 + MGP_C3HHeJ_P0023756 Susd4 protein_coding protein_coding MGP_C3HHeJ_T0019330.1 MGP_C3HHeJ_G0015742.1 mouse_genomes_project 1 39159344 39251816 + MGP_C3HHeJ_P0019330 Slc9a2 protein_coding protein_coding MGP_C3HHeJ_T0019331.1 MGP_C3HHeJ_G0015742.1 mouse_genomes_project 1 39160367 39206355 + MGP_C3HHeJ_P0019331 Slc9a2 protein_coding protein_coding MGP_C3HHeJ_T0019332.1 MGP_C3HHeJ_G0015742.1 mouse_genomes_project 1 39237091 39238404 + Slc9a2 protein_coding retained_intron MGP_C3HHeJ_T0005794.1 MGP_C3HHeJ_G0004851.1 mouse_genomes_project 1 113250494 113311980 - Gm29088 lincRNA lincRNA MGP_C3HHeJ_T0020241.1 MGP_C3HHeJ_G0015916.1 mouse_genomes_project 1 74596801 74612350 - MGP_C3HHeJ_P0020241 protein_coding unknown_likely_coding MGP_C3HHeJ_T0020242.1 MGP_C3HHeJ_G0015916.1 mouse_genomes_project 1 74596806 74612836 - protein_coding retained_intron MGP_C3HHeJ_T0020243.1 MGP_C3HHeJ_G0015916.1 mouse_genomes_project 1 74596806 74604202 - protein_coding retained_intron MGP_C3HHeJ_T0020244.1 MGP_C3HHeJ_G0015916.1 mouse_genomes_project 1 74597855 74599770 - MGP_C3HHeJ_P0020244 protein_coding protein_coding MGP_C3HHeJ_T0020245.1 MGP_C3HHeJ_G0015916.1 mouse_genomes_project 1 74602104 74612700 - protein_coding processed_transcript MGP_C3HHeJ_T0020246.1 MGP_C3HHeJ_G0015916.1 mouse_genomes_project 1 74602452 74614108 - MGP_C3HHeJ_P0020246 protein_coding protein_coding MGP_C3HHeJ_T0020247.1 MGP_C3HHeJ_G0015916.1 mouse_genomes_project 1 74602469 74612605 - MGP_C3HHeJ_P0020247 protein_coding protein_coding MGP_C3HHeJ_T0012028.1 MGP_C3HHeJ_G0010132.1 mouse_genomes_project 1 83719836 83722120 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005768.1 MGP_C3HHeJ_G0004831.1 mouse_genomes_project 1 93867227 93870197 - Gm29483 lincRNA lincRNA MGP_C3HHeJ_T0011765.1 MGP_C3HHeJ_G0009869.1 mouse_genomes_project 1 4026328 4026977 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098663.1 MGP_C3HHeJ_G0036857.1 mouse_genomes_project 1 155039548 155039681 - Gm25279 snRNA snRNA MGP_C3HHeJ_T0019434.1 MGP_C3HHeJ_G0015764.1 mouse_genomes_project 1 44072479 44207510 - MGP_C3HHeJ_P0019434 Col5a2 protein_coding protein_coding MGP_C3HHeJ_T0019435.1 MGP_C3HHeJ_G0015764.1 mouse_genomes_project 1 44089100 44093696 - Col5a2 protein_coding retained_intron MGP_C3HHeJ_T0019436.1 MGP_C3HHeJ_G0015764.1 mouse_genomes_project 1 44114492 44207510 - Col5a2 protein_coding retained_intron MGP_C3HHeJ_T0019437.1 MGP_C3HHeJ_G0015764.1 mouse_genomes_project 1 44117783 44122717 - Col5a2 protein_coding retained_intron MGP_C3HHeJ_T0022840.1 MGP_C3HHeJ_G0016435.1 mouse_genomes_project 1 166618771 166683762 - MGP_C3HHeJ_P0022840 Mroh9 protein_coding protein_coding MGP_C3HHeJ_T0023820.1 MGP_C3HHeJ_G0016674.1 mouse_genomes_project 1 190358449 190452537 + MGP_C3HHeJ_P0023820 Rab3gap2 protein_coding protein_coding MGP_C3HHeJ_T0023821.1 MGP_C3HHeJ_G0016674.1 mouse_genomes_project 1 190358449 190449963 + MGP_C3HHeJ_P0023821 Rab3gap2 protein_coding protein_coding MGP_C3HHeJ_T0023822.1 MGP_C3HHeJ_G0016674.1 mouse_genomes_project 1 190358510 190360785 + Rab3gap2 protein_coding retained_intron MGP_C3HHeJ_T0023823.1 MGP_C3HHeJ_G0016674.1 mouse_genomes_project 1 190427252 190452522 + Rab3gap2 protein_coding retained_intron MGP_C3HHeJ_T0023824.1 MGP_C3HHeJ_G0016674.1 mouse_genomes_project 1 190427415 190450501 + Rab3gap2 protein_coding retained_intron MGP_C3HHeJ_T0023825.1 MGP_C3HHeJ_G0016674.1 mouse_genomes_project 1 190443572 190447473 + Rab3gap2 protein_coding retained_intron MGP_C3HHeJ_T0018555.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3600146 3972337 + MGP_C3HHeJ_P0018555 St18 protein_coding protein_coding MGP_C3HHeJ_T0018556.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3600246 3972343 + MGP_C3HHeJ_P0018556 St18 protein_coding protein_coding MGP_C3HHeJ_T0018557.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3838199 3972343 + MGP_C3HHeJ_P0018557 St18 protein_coding protein_coding MGP_C3HHeJ_T0018558.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3838201 3905181 + MGP_C3HHeJ_P0018558 St18 protein_coding protein_coding MGP_C3HHeJ_T0018559.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3838218 3905306 + MGP_C3HHeJ_P0018559 St18 protein_coding protein_coding MGP_C3HHeJ_T0018560.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3838249 3970876 + MGP_C3HHeJ_P0018560 St18 protein_coding protein_coding MGP_C3HHeJ_T0018561.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3838250 3970219 + MGP_C3HHeJ_P0018561 St18 protein_coding protein_coding MGP_C3HHeJ_T0018562.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3843027 3912850 + MGP_C3HHeJ_P0018562 St18 protein_coding protein_coding MGP_C3HHeJ_T0018563.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3845733 3972343 + MGP_C3HHeJ_P0018563 St18 protein_coding protein_coding MGP_C3HHeJ_T0018564.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3912952 3919607 + MGP_C3HHeJ_P0018564 St18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018565.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3927597 3944375 + St18 protein_coding processed_transcript MGP_C3HHeJ_T0018566.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3938678 3960364 + St18 protein_coding processed_transcript MGP_C3HHeJ_T0018567.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3968747 3971010 + MGP_C3HHeJ_P0018567 St18 protein_coding protein_coding MGP_C3HHeJ_T0000558.1 MGP_C3HHeJ_G0000505.1 mouse_genomes_project 1 113706398 113706913 + TEC TEC MGP_C3HHeJ_T0101587.1 MGP_C3HHeJ_G0039553.1 mouse_genomes_project 1 142787081 142841454 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012200.1 MGP_C3HHeJ_G0010304.1 mouse_genomes_project 1 161002449 161003054 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020278.1 MGP_C3HHeJ_G0015922.1 mouse_genomes_project 1 74830195 74855524 + MGP_C3HHeJ_P0020278 Cnot9 protein_coding protein_coding MGP_C3HHeJ_T0020279.1 MGP_C3HHeJ_G0015922.1 mouse_genomes_project 1 74830197 74851773 + Cnot9 protein_coding processed_transcript MGP_C3HHeJ_T0020280.1 MGP_C3HHeJ_G0015922.1 mouse_genomes_project 1 74848212 74852859 + Cnot9 protein_coding retained_intron MGP_C3HHeJ_T0098569.1 MGP_C3HHeJ_G0036767.1 mouse_genomes_project 1 194489509 194490166 - 2900042K21Rik sense_overlapping sense_overlapping MGP_C3HHeJ_T0019995.1 MGP_C3HHeJ_G0015864.1 mouse_genomes_project 1 63948164 64040768 - MGP_C3HHeJ_P0019995 Klf7 protein_coding protein_coding MGP_C3HHeJ_T0019996.1 MGP_C3HHeJ_G0015864.1 mouse_genomes_project 1 63960589 64040759 - MGP_C3HHeJ_P0019996 Klf7 protein_coding protein_coding MGP_C3HHeJ_T0019997.1 MGP_C3HHeJ_G0015864.1 mouse_genomes_project 1 63998471 64041560 - MGP_C3HHeJ_P0019997 Klf7 protein_coding protein_coding MGP_C3HHeJ_T0019970.1 MGP_C3HHeJ_G0015858.1 mouse_genomes_project 1 63136012 63188253 + MGP_C3HHeJ_P0019970 Zdbf2 protein_coding protein_coding MGP_C3HHeJ_T0019971.1 MGP_C3HHeJ_G0015858.1 mouse_genomes_project 1 63136016 63167861 + MGP_C3HHeJ_P0019971 Zdbf2 protein_coding protein_coding MGP_C3HHeJ_T0019972.1 MGP_C3HHeJ_G0015858.1 mouse_genomes_project 1 63163458 63188252 + MGP_C3HHeJ_P0019972 Zdbf2 protein_coding protein_coding MGP_C3HHeJ_T0000345.1 MGP_C3HHeJ_G0000295.1 mouse_genomes_project 1 8568764 8571235 + TEC TEC MGP_C3HHeJ_T0000436.1 MGP_C3HHeJ_G0000383.1 mouse_genomes_project 1 46707515 46708421 + TEC TEC MGP_C3HHeJ_T0000548.1 MGP_C3HHeJ_G0000495.1 mouse_genomes_project 1 106390877 106393892 + TEC TEC MGP_C3HHeJ_T0000339.1 MGP_C3HHeJ_G0000289.1 mouse_genomes_project 1 6393537 6396802 + TEC TEC MGP_C3HHeJ_T0019864.1 MGP_C3HHeJ_G0015842.1 mouse_genomes_project 1 59773644 59782082 - Ica1l protein_coding processed_transcript MGP_C3HHeJ_T0019865.1 MGP_C3HHeJ_G0015842.1 mouse_genomes_project 1 59780222 59837385 - MGP_C3HHeJ_P0019865 Ica1l protein_coding protein_coding MGP_C3HHeJ_T0019866.1 MGP_C3HHeJ_G0015842.1 mouse_genomes_project 1 59780229 59837420 - MGP_C3HHeJ_P0019866 Ica1l protein_coding protein_coding MGP_C3HHeJ_T0019867.1 MGP_C3HHeJ_G0015842.1 mouse_genomes_project 1 59782278 59819621 - MGP_C3HHeJ_P0019867 Ica1l protein_coding protein_coding MGP_C3HHeJ_T0019868.1 MGP_C3HHeJ_G0015842.1 mouse_genomes_project 1 59806098 59814007 - Ica1l protein_coding retained_intron MGP_C3HHeJ_T0019869.1 MGP_C3HHeJ_G0015842.1 mouse_genomes_project 1 59811634 59837482 - Ica1l protein_coding processed_transcript MGP_C3HHeJ_T0011911.1 MGP_C3HHeJ_G0010015.1 mouse_genomes_project 1 44709102 44709567 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005971.1 MGP_C3HHeJ_G0004990.1 mouse_genomes_project 1 192141172 192144352 + 1700023G09Rik lincRNA lincRNA MGP_C3HHeJ_T0005972.1 MGP_C3HHeJ_G0004990.1 mouse_genomes_project 1 192141201 192143566 + 1700023G09Rik lincRNA lincRNA MGP_C3HHeJ_T0000496.1 MGP_C3HHeJ_G0000443.1 mouse_genomes_project 1 80198768 80200593 + TEC TEC MGP_C3HHeJ_T0000390.1 MGP_C3HHeJ_G0000338.1 mouse_genomes_project 1 23486559 23489869 - TEC TEC MGP_C3HHeJ_T0012245.1 MGP_C3HHeJ_G0010349.1 mouse_genomes_project 1 185880490 185880939 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099871.1 MGP_C3HHeJ_G0038065.1 mouse_genomes_project 1 103937218 103937317 - Gm23036 snoRNA snoRNA MGP_C3HHeJ_T0011965.1 MGP_C3HHeJ_G0010069.1 mouse_genomes_project 1 60596875 60598218 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098629.1 MGP_C3HHeJ_G0036823.1 mouse_genomes_project 1 72482100 72482291 + Gm25939 snRNA snRNA MGP_C3HHeJ_T0011851.1 MGP_C3HHeJ_G0009955.1 mouse_genomes_project 1 28862116 28862481 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101102.1 MGP_C3HHeJ_G0039284.1 mouse_genomes_project 1 188307747 188309122 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101103.1 MGP_C3HHeJ_G0039284.1 mouse_genomes_project 1 188308114 188308890 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0022329.1 MGP_C3HHeJ_G0016345.1 mouse_genomes_project 1 153692899 154141893 - MGP_C3HHeJ_P0022329 Hmcn1 protein_coding protein_coding MGP_C3HHeJ_T0022330.1 MGP_C3HHeJ_G0016345.1 mouse_genomes_project 1 153693902 154141893 - MGP_C3HHeJ_P0022330 Hmcn1 protein_coding protein_coding MGP_C3HHeJ_T0022331.1 MGP_C3HHeJ_G0016345.1 mouse_genomes_project 1 153694059 153714039 - MGP_C3HHeJ_P0022331 Hmcn1 protein_coding protein_coding MGP_C3HHeJ_T0022332.1 MGP_C3HHeJ_G0016345.1 mouse_genomes_project 1 153694086 153695980 - Hmcn1 protein_coding retained_intron MGP_C3HHeJ_T0022333.1 MGP_C3HHeJ_G0016345.1 mouse_genomes_project 1 153708261 153711442 - Hmcn1 protein_coding processed_transcript MGP_C3HHeJ_T0022334.1 MGP_C3HHeJ_G0016345.1 mouse_genomes_project 1 154015163 154142277 - Hmcn1 protein_coding retained_intron MGP_C3HHeJ_T0000612.1 MGP_C3HHeJ_G0000558.1 mouse_genomes_project 1 138496505 138499201 - TEC TEC MGP_C3HHeJ_T0000780.1 MGP_C3HHeJ_G0000722.1 mouse_genomes_project 1 200582192 200584432 - TEC TEC MGP_C3HHeJ_T0099878.1 MGP_C3HHeJ_G0038072.1 mouse_genomes_project 1 115618121 115618255 - Gm24937 snoRNA snoRNA MGP_C3HHeJ_T0098680.1 MGP_C3HHeJ_G0036874.1 mouse_genomes_project 1 186889887 186889981 - Gm23690 snRNA snRNA MGP_C3HHeJ_T0023369.1 MGP_C3HHeJ_G0016556.1 mouse_genomes_project 1 176873363 176883608 + MGP_C3HHeJ_P0023369 Vsig8 protein_coding protein_coding MGP_C3HHeJ_T0023370.1 MGP_C3HHeJ_G0016556.1 mouse_genomes_project 1 176878929 176883607 + MGP_C3HHeJ_P0023370 Vsig8 protein_coding protein_coding MGP_C3HHeJ_T0009472.1 MGP_C3HHeJ_G0007605.1 mouse_genomes_project 1 189954813 189954895 - Mir1981 miRNA miRNA MGP_C3HHeJ_T0000626.1 MGP_C3HHeJ_G0000571.1 mouse_genomes_project 1 140987524 140987945 + TEC TEC MGP_C3HHeJ_T0000671.1 MGP_C3HHeJ_G0000616.1 mouse_genomes_project 1 161348407 161561190 + TEC TEC MGP_C3HHeJ_T0000501.1 MGP_C3HHeJ_G0000448.1 mouse_genomes_project 1 81137768 81141316 - TEC TEC MGP_C3HHeJ_T0000679.1 MGP_C3HHeJ_G0000624.1 mouse_genomes_project 1 163832813 163833959 - TEC TEC MGP_C3HHeJ_T0005618.1 MGP_C3HHeJ_G0004720.1 mouse_genomes_project 1 39669894 39683555 - 4930448I06Rik lincRNA lincRNA MGP_C3HHeJ_T0005974.1 MGP_C3HHeJ_G0004992.1 mouse_genomes_project 1 193495334 193507345 + Gm38064 lincRNA lincRNA MGP_C3HHeJ_T0000486.1 MGP_C3HHeJ_G0000433.1 mouse_genomes_project 1 73495055 73497565 - TEC TEC MGP_C3HHeJ_T0012014.1 MGP_C3HHeJ_G0010118.1 mouse_genomes_project 1 77921606 77921898 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012272.1 MGP_C3HHeJ_G0010376.1 mouse_genomes_project 1 198299607 198300039 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098315.1 MGP_C3HHeJ_G0036527.1 mouse_genomes_project 1 69244745 69259615 - Gm16076 sense_intronic sense_intronic MGP_C3HHeJ_T0002834.1 MGP_C3HHeJ_G0002673.1 mouse_genomes_project 1 138721936 138725182 - Gm37759 antisense antisense MGP_C3HHeJ_T0023376.1 MGP_C3HHeJ_G0016559.1 mouse_genomes_project 1 176959571 176961771 - MGP_C3HHeJ_P0023376 Dusp23 protein_coding protein_coding MGP_C3HHeJ_T0005579.1 MGP_C3HHeJ_G0004686.1 mouse_genomes_project 1 14051490 14056226 + D030040B21Rik lincRNA lincRNA MGP_C3HHeJ_T0005759.1 MGP_C3HHeJ_G0004822.1 mouse_genomes_project 1 91709950 91714585 + Gm9991 lincRNA lincRNA MGP_C3HHeJ_T0002706.1 MGP_C3HHeJ_G0002577.1 mouse_genomes_project 1 29160877 29174945 + Gm29128 antisense antisense MGP_C3HHeJ_T0000465.1 MGP_C3HHeJ_G0000412.1 mouse_genomes_project 1 62088630 62091148 + TEC TEC MGP_C3HHeJ_T0012021.1 MGP_C3HHeJ_G0010125.1 mouse_genomes_project 1 82247730 82249982 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005738.1 MGP_C3HHeJ_G0004803.1 mouse_genomes_project 1 83598780 83599737 - Krtap28-10 lincRNA lincRNA MGP_C3HHeJ_T0020437.1 MGP_C3HHeJ_G0015948.1 mouse_genomes_project 1 75499330 75504397 - MGP_C3HHeJ_P0020437 Tuba4a protein_coding protein_coding MGP_C3HHeJ_T0020438.1 MGP_C3HHeJ_G0015948.1 mouse_genomes_project 1 75500074 75503727 - MGP_C3HHeJ_P0020438 Tuba4a protein_coding protein_coding MGP_C3HHeJ_T0020439.1 MGP_C3HHeJ_G0015948.1 mouse_genomes_project 1 75500714 75502537 - MGP_C3HHeJ_P0020439 Tuba4a protein_coding protein_coding MGP_C3HHeJ_T0020440.1 MGP_C3HHeJ_G0015948.1 mouse_genomes_project 1 75501058 75502517 - MGP_C3HHeJ_P0020440 Tuba4a protein_coding protein_coding MGP_C3HHeJ_T0020441.1 MGP_C3HHeJ_G0015948.1 mouse_genomes_project 1 75501537 75504346 - Tuba4a protein_coding retained_intron MGP_C3HHeJ_T0020442.1 MGP_C3HHeJ_G0015948.1 mouse_genomes_project 1 75501959 75504968 - MGP_C3HHeJ_P0020442 Tuba4a protein_coding protein_coding MGP_C3HHeJ_T0020443.1 MGP_C3HHeJ_G0015948.1 mouse_genomes_project 1 75501991 75503991 - MGP_C3HHeJ_P0020443 Tuba4a protein_coding protein_coding MGP_C3HHeJ_T0020444.1 MGP_C3HHeJ_G0015948.1 mouse_genomes_project 1 75502015 75503991 - MGP_C3HHeJ_P0020444 Tuba4a protein_coding protein_coding MGP_C3HHeJ_T0000725.1 MGP_C3HHeJ_G0000670.1 mouse_genomes_project 1 181772614 181773907 - TEC TEC MGP_C3HHeJ_T0002876.1 MGP_C3HHeJ_G0002706.1 mouse_genomes_project 1 170026765 170029609 - 5330438I03Rik antisense antisense MGP_C3HHeJ_T0009424.1 MGP_C3HHeJ_G0007557.1 mouse_genomes_project 1 86430722 86430849 + Mir8096 miRNA miRNA MGP_C3HHeJ_T0000334.1 MGP_C3HHeJ_G0000284.1 mouse_genomes_project 1 3972639 3975548 - TEC TEC MGP_C3HHeJ_T0000536.1 MGP_C3HHeJ_G0000483.1 mouse_genomes_project 1 93010294 93013590 + TEC TEC MGP_C3HHeJ_T0101558.1 MGP_C3HHeJ_G0039524.1 mouse_genomes_project 1 87868843 87871814 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0023340.1 MGP_C3HHeJ_G0016550.1 mouse_genomes_project 1 176645169 176678182 + MGP_C3HHeJ_P0023340 Kcnj10 protein_coding protein_coding MGP_C3HHeJ_T0000473.1 MGP_C3HHeJ_G0000420.1 mouse_genomes_project 1 66785390 66786529 - TEC TEC MGP_C3HHeJ_T0012079.1 MGP_C3HHeJ_G0010183.1 mouse_genomes_project 1 107757556 107758504 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000367.1 MGP_C3HHeJ_G0000317.1 mouse_genomes_project 1 18998921 19001248 - TEC TEC MGP_C3HHeJ_T0021878.1 MGP_C3HHeJ_G0016253.1 mouse_genomes_project 1 135787421 135808143 + MGP_C3HHeJ_P0021878 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021879.1 MGP_C3HHeJ_G0016253.1 mouse_genomes_project 1 135787421 135807936 + MGP_C3HHeJ_P0021879 protein_coding protein_coding MGP_C3HHeJ_T0021881.1 MGP_C3HHeJ_G0016253.1 mouse_genomes_project 1 135800145 135808143 + MGP_C3HHeJ_P0021881 protein_coding protein_coding MGP_C3HHeJ_T0021883.1 MGP_C3HHeJ_G0016253.1 mouse_genomes_project 1 135805453 135807964 + MGP_C3HHeJ_P0021883 protein_coding protein_coding MGP_C3HHeJ_T0005594.1 MGP_C3HHeJ_G0004700.1 mouse_genomes_project 1 25715807 25736941 + Gm5524 lincRNA lincRNA MGP_C3HHeJ_T0011782.1 MGP_C3HHeJ_G0009886.1 mouse_genomes_project 1 6065289 6068313 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099841.1 MGP_C3HHeJ_G0038035.1 mouse_genomes_project 1 41477985 41478119 - Gm23126 snoRNA snoRNA MGP_C3HHeJ_T0000702.1 MGP_C3HHeJ_G0000647.1 mouse_genomes_project 1 169273389 169274198 + TEC TEC MGP_C3HHeJ_T0021153.1 MGP_C3HHeJ_G0016096.1 mouse_genomes_project 1 94094781 94109391 + MGP_C3HHeJ_P0021153 Capn10 protein_coding protein_coding MGP_C3HHeJ_T0021154.1 MGP_C3HHeJ_G0016096.1 mouse_genomes_project 1 94095171 94102436 + MGP_C3HHeJ_P0021154 Capn10 protein_coding protein_coding MGP_C3HHeJ_T0021155.1 MGP_C3HHeJ_G0016096.1 mouse_genomes_project 1 94095238 94109379 + MGP_C3HHeJ_P0021155 Capn10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021156.1 MGP_C3HHeJ_G0016096.1 mouse_genomes_project 1 94101922 94106553 + MGP_C3HHeJ_P0021156 Capn10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021157.1 MGP_C3HHeJ_G0016096.1 mouse_genomes_project 1 94104153 94105194 + Capn10 protein_coding retained_intron MGP_C3HHeJ_T0021158.1 MGP_C3HHeJ_G0016096.1 mouse_genomes_project 1 94108002 94108405 + Capn10 protein_coding processed_transcript MGP_C3HHeJ_T0021159.1 MGP_C3HHeJ_G0016096.1 mouse_genomes_project 1 94108334 94109040 + Capn10 protein_coding retained_intron MGP_C3HHeJ_T0009453.1 MGP_C3HHeJ_G0007586.1 mouse_genomes_project 1 161932559 161932668 + Mir488 miRNA miRNA MGP_C3HHeJ_T0019897.1 MGP_C3HHeJ_G0015846.1 mouse_genomes_project 1 60165191 60194581 + Cyp20a1 protein_coding retained_intron MGP_C3HHeJ_T0019898.1 MGP_C3HHeJ_G0015846.1 mouse_genomes_project 1 60165191 60209914 + MGP_C3HHeJ_P0019898 Cyp20a1 protein_coding protein_coding MGP_C3HHeJ_T0019899.1 MGP_C3HHeJ_G0015846.1 mouse_genomes_project 1 60165191 60209914 + MGP_C3HHeJ_P0019899 Cyp20a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000360.1 MGP_C3HHeJ_G0000310.1 mouse_genomes_project 1 13203805 13206974 + TEC TEC MGP_C3HHeJ_T0005870.1 MGP_C3HHeJ_G0004913.1 mouse_genomes_project 1 157329670 157336609 - Gm28286 lincRNA lincRNA MGP_C3HHeJ_T0005587.1 MGP_C3HHeJ_G0004694.1 mouse_genomes_project 1 19538514 19541195 + Gm26580 lincRNA lincRNA MGP_C3HHeJ_T0000523.1 MGP_C3HHeJ_G0000470.1 mouse_genomes_project 1 87665380 87666951 + TEC TEC MGP_C3HHeJ_T0016867.1 MGP_C3HHeJ_G0014888.1 mouse_genomes_project 1 200478591 200523949 + A330023F24Rik processed_transcript lincRNA MGP_C3HHeJ_T0016868.1 MGP_C3HHeJ_G0014888.1 mouse_genomes_project 1 200478601 200529836 + A330023F24Rik processed_transcript retained_intron MGP_C3HHeJ_T0016869.1 MGP_C3HHeJ_G0014888.1 mouse_genomes_project 1 200519843 200539343 + A330023F24Rik processed_transcript lincRNA MGP_C3HHeJ_T0016870.1 MGP_C3HHeJ_G0014888.1 mouse_genomes_project 1 200526516 200540318 + A330023F24Rik processed_transcript retained_intron MGP_C3HHeJ_T0099834.1 MGP_C3HHeJ_G0038028.1 mouse_genomes_project 1 24278202 24278308 + Gm24064 snoRNA snoRNA MGP_C3HHeJ_T0021891.1 MGP_C3HHeJ_G0016256.1 mouse_genomes_project 1 135861815 135872731 - MGP_C3HHeJ_P0021891 Sox13 protein_coding protein_coding MGP_C3HHeJ_T0021892.1 MGP_C3HHeJ_G0016256.1 mouse_genomes_project 1 135861815 135903885 - MGP_C3HHeJ_P0021892 Sox13 protein_coding protein_coding MGP_C3HHeJ_T0021893.1 MGP_C3HHeJ_G0016256.1 mouse_genomes_project 1 135863163 135872783 - MGP_C3HHeJ_P0021893 Sox13 protein_coding protein_coding MGP_C3HHeJ_T0021894.1 MGP_C3HHeJ_G0016256.1 mouse_genomes_project 1 135863490 135865039 - Sox13 protein_coding retained_intron MGP_C3HHeJ_T0021895.1 MGP_C3HHeJ_G0016256.1 mouse_genomes_project 1 135864049 135865947 - Sox13 protein_coding retained_intron MGP_C3HHeJ_T0023525.1 MGP_C3HHeJ_G0016611.1 mouse_genomes_project 1 182392595 182417745 + MGP_C3HHeJ_P0023525 1700016C15Rik protein_coding protein_coding MGP_C3HHeJ_T0005658.1 MGP_C3HHeJ_G0004744.1 mouse_genomes_project 1 55456440 55502178 + 9130227L01Rik lincRNA lincRNA MGP_C3HHeJ_T0005659.1 MGP_C3HHeJ_G0004744.1 mouse_genomes_project 1 55490084 55502408 + 9130227L01Rik lincRNA lincRNA MGP_C3HHeJ_T0012117.1 MGP_C3HHeJ_G0010221.1 mouse_genomes_project 1 122012785 122013305 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012214.1 MGP_C3HHeJ_G0010318.1 mouse_genomes_project 1 168137254 168137570 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011920.1 MGP_C3HHeJ_G0010024.1 mouse_genomes_project 1 47886677 47887608 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019746.1 MGP_C3HHeJ_G0015822.1 mouse_genomes_project 1 58060069 58079118 + MGP_C3HHeJ_P0019746 Nif3l1 protein_coding protein_coding MGP_C3HHeJ_T0019747.1 MGP_C3HHeJ_G0015822.1 mouse_genomes_project 1 58060185 58099005 + MGP_C3HHeJ_P0019747 Nif3l1 protein_coding protein_coding MGP_C3HHeJ_T0019748.1 MGP_C3HHeJ_G0015822.1 mouse_genomes_project 1 58060546 58065426 + MGP_C3HHeJ_P0019748 Nif3l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019749.1 MGP_C3HHeJ_G0015822.1 mouse_genomes_project 1 58060647 58062969 + MGP_C3HHeJ_P0019749 Nif3l1 protein_coding protein_coding MGP_C3HHeJ_T0019750.1 MGP_C3HHeJ_G0015822.1 mouse_genomes_project 1 58062549 58077928 + MGP_C3HHeJ_P0019750 Nif3l1 protein_coding protein_coding MGP_C3HHeJ_T0019751.1 MGP_C3HHeJ_G0015822.1 mouse_genomes_project 1 58064085 58073462 + Nif3l1 protein_coding retained_intron MGP_C3HHeJ_T0019752.1 MGP_C3HHeJ_G0015822.1 mouse_genomes_project 1 58068188 58070973 + Nif3l1 protein_coding retained_intron MGP_C3HHeJ_T0019753.1 MGP_C3HHeJ_G0015822.1 mouse_genomes_project 1 58073346 58077046 + Nif3l1 protein_coding retained_intron MGP_C3HHeJ_T0021494.1 MGP_C3HHeJ_G0016168.1 mouse_genomes_project 1 121935243 121940561 - MGP_C3HHeJ_P0021494 Tmem177 protein_coding protein_coding MGP_C3HHeJ_T0009466.1 MGP_C3HHeJ_G0007599.1 mouse_genomes_project 1 175919700 175919761 - Mir7683 miRNA miRNA MGP_C3HHeJ_T0016752.1 MGP_C3HHeJ_G0014850.1 mouse_genomes_project 1 32656983 32659408 - Gm28417 processed_transcript retained_intron MGP_C3HHeJ_T0016753.1 MGP_C3HHeJ_G0014850.1 mouse_genomes_project 1 32659128 32662073 - Gm28417 processed_transcript antisense MGP_C3HHeJ_T0016754.1 MGP_C3HHeJ_G0014850.1 mouse_genomes_project 1 32660481 32662037 - Gm28417 processed_transcript antisense MGP_C3HHeJ_T0005622.1 MGP_C3HHeJ_G0004723.1 mouse_genomes_project 1 40815528 40816911 + Gm9915 lincRNA lincRNA MGP_C3HHeJ_T0005623.1 MGP_C3HHeJ_G0004723.1 mouse_genomes_project 1 40815529 40816911 + Gm9915 lincRNA lincRNA MGP_C3HHeJ_T0020596.1 MGP_C3HHeJ_G0015973.1 mouse_genomes_project 1 80035950 80106220 - MGP_C3HHeJ_P0020596 Ap1s3 protein_coding protein_coding MGP_C3HHeJ_T0020597.1 MGP_C3HHeJ_G0015973.1 mouse_genomes_project 1 80038089 80106213 - MGP_C3HHeJ_P0020597 Ap1s3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020598.1 MGP_C3HHeJ_G0015973.1 mouse_genomes_project 1 80038430 80106216 - MGP_C3HHeJ_P0020598 Ap1s3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099900.1 MGP_C3HHeJ_G0038094.1 mouse_genomes_project 1 164589016 164589099 + Gm22357 snoRNA snoRNA MGP_C3HHeJ_T0101552.1 MGP_C3HHeJ_G0039518.1 mouse_genomes_project 1 65355298 65355570 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0097952.1 MGP_C3HHeJ_G0036164.1 mouse_genomes_project 1 24714145 24714264 - n-R5s209 rRNA rRNA MGP_C3HHeJ_T0011816.1 MGP_C3HHeJ_G0009920.1 mouse_genomes_project 1 16509220 16509332 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023044.1 MGP_C3HHeJ_G0016484.1 mouse_genomes_project 1 173286775 173322602 - MGP_C3HHeJ_P0023044 Nuf2 protein_coding protein_coding MGP_C3HHeJ_T0023045.1 MGP_C3HHeJ_G0016484.1 mouse_genomes_project 1 173287154 173322566 - MGP_C3HHeJ_P0023045 Nuf2 protein_coding protein_coding MGP_C3HHeJ_T0023046.1 MGP_C3HHeJ_G0016484.1 mouse_genomes_project 1 173296268 173312643 - MGP_C3HHeJ_P0023046 Nuf2 protein_coding protein_coding MGP_C3HHeJ_T0023047.1 MGP_C3HHeJ_G0016484.1 mouse_genomes_project 1 173300732 173322549 - MGP_C3HHeJ_P0023047 Nuf2 protein_coding protein_coding MGP_C3HHeJ_T0023048.1 MGP_C3HHeJ_G0016484.1 mouse_genomes_project 1 173315282 173322556 - Nuf2 protein_coding retained_intron MGP_C3HHeJ_T0023533.1 MGP_C3HHeJ_G0016614.1 mouse_genomes_project 1 183193698 183196904 + Cox20 protein_coding retained_intron MGP_C3HHeJ_T0023534.1 MGP_C3HHeJ_G0016614.1 mouse_genomes_project 1 183193698 183197262 + MGP_C3HHeJ_P0023534 Cox20 protein_coding protein_coding MGP_C3HHeJ_T0020970.1 MGP_C3HHeJ_G0016055.1 mouse_genomes_project 1 90065208 90146092 + MGP_C3HHeJ_P0020970 Sh3bp4 protein_coding protein_coding MGP_C3HHeJ_T0020971.1 MGP_C3HHeJ_G0016055.1 mouse_genomes_project 1 90065246 90103902 + Sh3bp4 protein_coding processed_transcript MGP_C3HHeJ_T0021181.1 MGP_C3HHeJ_G0016101.1 mouse_genomes_project 1 94319946 94329563 - MGP_C3HHeJ_P0021181 2310007B03Rik protein_coding protein_coding MGP_C3HHeJ_T0021182.1 MGP_C3HHeJ_G0016101.1 mouse_genomes_project 1 94320180 94329485 - MGP_C3HHeJ_P0021182 2310007B03Rik protein_coding protein_coding MGP_C3HHeJ_T0002880.1 MGP_C3HHeJ_G0002710.1 mouse_genomes_project 1 173803162 173806160 + 3110045C21Rik antisense antisense MGP_C3HHeJ_T0002881.1 MGP_C3HHeJ_G0002710.1 mouse_genomes_project 1 173803205 173806134 + 3110045C21Rik antisense antisense MGP_C3HHeJ_T0020835.1 MGP_C3HHeJ_G0016026.1 mouse_genomes_project 1 88010076 88013717 + MGP_C3HHeJ_P0020835 Chrng protein_coding protein_coding MGP_C3HHeJ_T0020836.1 MGP_C3HHeJ_G0016026.1 mouse_genomes_project 1 88011226 88013716 + MGP_C3HHeJ_P0020836 Chrng protein_coding protein_coding MGP_C3HHeJ_T0020837.1 MGP_C3HHeJ_G0016026.1 mouse_genomes_project 1 88011227 88019140 + MGP_C3HHeJ_P0020837 Chrng protein_coding protein_coding MGP_C3HHeJ_T0020838.1 MGP_C3HHeJ_G0016026.1 mouse_genomes_project 1 88011301 88013716 + MGP_C3HHeJ_P0020838 Chrng protein_coding protein_coding MGP_C3HHeJ_T0020839.1 MGP_C3HHeJ_G0016026.1 mouse_genomes_project 1 88011490 88014016 + Chrng protein_coding retained_intron MGP_C3HHeJ_T0098667.1 MGP_C3HHeJ_G0036861.1 mouse_genomes_project 1 174613070 174613177 - Gm23523 snRNA snRNA MGP_C3HHeJ_T0002912.1 MGP_C3HHeJ_G0002736.1 mouse_genomes_project 1 192179911 192182987 - Gm37912 antisense antisense MGP_C3HHeJ_T0011755.1 MGP_C3HHeJ_G0009859.1 mouse_genomes_project 1 1753121 1754327 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000615.1 MGP_C3HHeJ_G0000561.1 mouse_genomes_project 1 140002604 140003013 - TEC TEC MGP_C3HHeJ_T0019304.1 MGP_C3HHeJ_G0015736.1 mouse_genomes_project 1 38680246 38775382 + MGP_C3HHeJ_P0019304 Il1r1 protein_coding protein_coding MGP_C3HHeJ_T0019305.1 MGP_C3HHeJ_G0015736.1 mouse_genomes_project 1 38724936 38774326 + MGP_C3HHeJ_P0019305 Il1r1 protein_coding protein_coding MGP_C3HHeJ_T0019306.1 MGP_C3HHeJ_G0015736.1 mouse_genomes_project 1 38725007 38735525 + Il1r1 protein_coding processed_transcript MGP_C3HHeJ_T0005614.1 MGP_C3HHeJ_G0004718.1 mouse_genomes_project 1 37447069 37456225 - Gm37821 lincRNA lincRNA MGP_C3HHeJ_T0000420.1 MGP_C3HHeJ_G0000367.1 mouse_genomes_project 1 36018715 36020635 + TEC TEC MGP_C3HHeJ_T0098662.1 MGP_C3HHeJ_G0036856.1 mouse_genomes_project 1 154430058 154430149 - Gm24402 snRNA snRNA MGP_C3HHeJ_T0023056.1 MGP_C3HHeJ_G0016488.1 mouse_genomes_project 1 173783266 173802995 - MGP_C3HHeJ_P0023056 Hsd17b7 protein_coding protein_coding MGP_C3HHeJ_T0023057.1 MGP_C3HHeJ_G0016488.1 mouse_genomes_project 1 173786585 173799478 - Hsd17b7 protein_coding processed_transcript MGP_C3HHeJ_T0023058.1 MGP_C3HHeJ_G0016488.1 mouse_genomes_project 1 173789209 173802995 - MGP_C3HHeJ_P0023058 Hsd17b7 protein_coding protein_coding MGP_C3HHeJ_T0023059.1 MGP_C3HHeJ_G0016488.1 mouse_genomes_project 1 173793137 173799905 - Hsd17b7 protein_coding processed_transcript MGP_C3HHeJ_T0005660.1 MGP_C3HHeJ_G0004745.1 mouse_genomes_project 1 55550536 55551762 + 1700003I22Rik lincRNA lincRNA MGP_C3HHeJ_T0005661.1 MGP_C3HHeJ_G0004745.1 mouse_genomes_project 1 55550581 55551696 + 1700003I22Rik lincRNA lincRNA MGP_C3HHeJ_T0011905.1 MGP_C3HHeJ_G0010009.1 mouse_genomes_project 1 44217592 44218116 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022567.1 MGP_C3HHeJ_G0016390.1 mouse_genomes_project 1 159750157 159801460 - MGP_C3HHeJ_P0022567 Soat1 protein_coding protein_coding MGP_C3HHeJ_T0022568.1 MGP_C3HHeJ_G0016390.1 mouse_genomes_project 1 159755393 159794079 - MGP_C3HHeJ_P0022568 Soat1 protein_coding protein_coding MGP_C3HHeJ_T0022569.1 MGP_C3HHeJ_G0016390.1 mouse_genomes_project 1 159756320 159758267 - Soat1 protein_coding retained_intron MGP_C3HHeJ_T0022570.1 MGP_C3HHeJ_G0016390.1 mouse_genomes_project 1 159756571 159758713 - Soat1 protein_coding retained_intron MGP_C3HHeJ_T0022571.1 MGP_C3HHeJ_G0016390.1 mouse_genomes_project 1 159766525 159801369 - Soat1 protein_coding retained_intron MGP_C3HHeJ_T0022572.1 MGP_C3HHeJ_G0016390.1 mouse_genomes_project 1 159766951 159801425 - MGP_C3HHeJ_P0022572 Soat1 protein_coding protein_coding MGP_C3HHeJ_T0022573.1 MGP_C3HHeJ_G0016390.1 mouse_genomes_project 1 159772736 159801326 - Soat1 protein_coding retained_intron MGP_C3HHeJ_T0022574.1 MGP_C3HHeJ_G0016390.1 mouse_genomes_project 1 159772969 159801393 - MGP_C3HHeJ_P0022574 Soat1 protein_coding protein_coding MGP_C3HHeJ_T0005932.1 MGP_C3HHeJ_G0004963.1 mouse_genomes_project 1 186090542 186093632 + Gm37406 lincRNA lincRNA MGP_C3HHeJ_T0000549.1 MGP_C3HHeJ_G0000496.1 mouse_genomes_project 1 106528576 106531534 + TEC TEC MGP_C3HHeJ_T0002683.1 MGP_C3HHeJ_G0002563.1 mouse_genomes_project 1 6858094 6906229 + 1700034P13Rik antisense antisense MGP_C3HHeJ_T0002684.1 MGP_C3HHeJ_G0002563.1 mouse_genomes_project 1 6858402 6902703 + 1700034P13Rik antisense antisense MGP_C3HHeJ_T0002685.1 MGP_C3HHeJ_G0002563.1 mouse_genomes_project 1 6858927 6883455 + 1700034P13Rik antisense antisense MGP_C3HHeJ_T0002686.1 MGP_C3HHeJ_G0002563.1 mouse_genomes_project 1 6859033 6883294 + 1700034P13Rik antisense antisense MGP_C3HHeJ_T0002687.1 MGP_C3HHeJ_G0002563.1 mouse_genomes_project 1 6894869 6902549 + 1700034P13Rik antisense antisense MGP_C3HHeJ_T0098596.1 MGP_C3HHeJ_G0036790.1 mouse_genomes_project 1 6574278 6574381 + Gm24765 snRNA snRNA MGP_C3HHeJ_T0021140.1 MGP_C3HHeJ_G0016094.1 mouse_genomes_project 1 94067406 94068861 + MGP_C3HHeJ_P0021140 Dusp28 protein_coding protein_coding MGP_C3HHeJ_T0022645.1 MGP_C3HHeJ_G0016402.1 mouse_genomes_project 1 162134656 162393823 - MGP_C3HHeJ_P0022645 Pappa2 protein_coding protein_coding MGP_C3HHeJ_T0022646.1 MGP_C3HHeJ_G0016402.1 mouse_genomes_project 1 162188945 162239567 - MGP_C3HHeJ_P0022646 Pappa2 protein_coding protein_coding MGP_C3HHeJ_T0022647.1 MGP_C3HHeJ_G0016402.1 mouse_genomes_project 1 162239371 162272710 - Pappa2 protein_coding retained_intron MGP_C3HHeJ_T0022648.1 MGP_C3HHeJ_G0016402.1 mouse_genomes_project 1 162257394 162267288 - Pappa2 protein_coding processed_transcript MGP_C3HHeJ_T0022649.1 MGP_C3HHeJ_G0016402.1 mouse_genomes_project 1 162393531 162395804 - Pappa2 protein_coding processed_transcript MGP_C3HHeJ_T0022650.1 MGP_C3HHeJ_G0016402.1 mouse_genomes_project 1 162393582 162416173 - Pappa2 protein_coding processed_transcript MGP_C3HHeJ_T0020726.1 MGP_C3HHeJ_G0015999.1 mouse_genomes_project 1 86339059 86372891 + MGP_C3HHeJ_P0020726 Sp100 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020727.1 MGP_C3HHeJ_G0015999.1 mouse_genomes_project 1 86339059 86386457 + MGP_C3HHeJ_P0020727 Sp100 protein_coding protein_coding MGP_C3HHeJ_T0020728.1 MGP_C3HHeJ_G0015999.1 mouse_genomes_project 1 86346837 86359565 + Sp100 protein_coding processed_transcript MGP_C3HHeJ_T0020729.1 MGP_C3HHeJ_G0015999.1 mouse_genomes_project 1 86348729 86356212 + Sp100 protein_coding retained_intron MGP_C3HHeJ_T0020730.1 MGP_C3HHeJ_G0015999.1 mouse_genomes_project 1 86370461 86376194 + Sp100 protein_coding retained_intron MGP_C3HHeJ_T0020731.1 MGP_C3HHeJ_G0015999.1 mouse_genomes_project 1 86370819 86385917 + MGP_C3HHeJ_P0020731 Sp100 protein_coding protein_coding MGP_C3HHeJ_T0020732.1 MGP_C3HHeJ_G0015999.1 mouse_genomes_project 1 86379952 86384506 + MGP_C3HHeJ_P0020732 Sp100 protein_coding protein_coding MGP_C3HHeJ_T0005909.1 MGP_C3HHeJ_G0004942.1 mouse_genomes_project 1 169811007 169811168 + Gm37923 lincRNA lincRNA MGP_C3HHeJ_T0021167.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94176955 94272773 - MGP_C3HHeJ_P0021167 Kif1a protein_coding protein_coding MGP_C3HHeJ_T0021168.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94179244 94272782 - MGP_C3HHeJ_P0021168 Kif1a protein_coding protein_coding MGP_C3HHeJ_T0021169.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94179433 94272902 - MGP_C3HHeJ_P0021169 Kif1a protein_coding protein_coding MGP_C3HHeJ_T0021170.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94179773 94272798 - MGP_C3HHeJ_P0021170 Kif1a protein_coding protein_coding MGP_C3HHeJ_T0021171.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94179950 94252246 - MGP_C3HHeJ_P0021171 Kif1a protein_coding protein_coding MGP_C3HHeJ_T0021172.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94183814 94186202 - MGP_C3HHeJ_P0021172 Kif1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021173.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94184986 94188699 - Kif1a protein_coding retained_intron MGP_C3HHeJ_T0021174.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94200528 94272797 - Kif1a protein_coding processed_transcript MGP_C3HHeJ_T0021175.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94203983 94219953 - MGP_C3HHeJ_P0021175 Kif1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021176.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94235957 94238583 - Kif1a protein_coding processed_transcript MGP_C3HHeJ_T0021177.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94247548 94272785 - MGP_C3HHeJ_P0021177 Kif1a protein_coding protein_coding MGP_C3HHeJ_T0020111.1 MGP_C3HHeJ_G0015887.1 mouse_genomes_project 1 66987957 67026791 - MGP_C3HHeJ_P0020111 Lancl1 protein_coding protein_coding MGP_C3HHeJ_T0020112.1 MGP_C3HHeJ_G0015887.1 mouse_genomes_project 1 66987957 67026784 - MGP_C3HHeJ_P0020112 Lancl1 protein_coding protein_coding MGP_C3HHeJ_T0020113.1 MGP_C3HHeJ_G0015887.1 mouse_genomes_project 1 66990842 67026753 - MGP_C3HHeJ_P0020113 Lancl1 protein_coding protein_coding MGP_C3HHeJ_T0020114.1 MGP_C3HHeJ_G0015887.1 mouse_genomes_project 1 66994467 67008592 - Lancl1 protein_coding processed_transcript MGP_C3HHeJ_T0020115.1 MGP_C3HHeJ_G0015887.1 mouse_genomes_project 1 66997374 67026753 - MGP_C3HHeJ_P0020115 Lancl1 protein_coding protein_coding MGP_C3HHeJ_T0020116.1 MGP_C3HHeJ_G0015887.1 mouse_genomes_project 1 67007135 67009744 - Lancl1 protein_coding retained_intron MGP_C3HHeJ_T0005705.1 MGP_C3HHeJ_G0004780.1 mouse_genomes_project 1 72464135 72493210 + D230017M19Rik lincRNA lincRNA MGP_C3HHeJ_T0005706.1 MGP_C3HHeJ_G0004780.1 mouse_genomes_project 1 72471741 72502105 + D230017M19Rik lincRNA lincRNA MGP_C3HHeJ_T0005707.1 MGP_C3HHeJ_G0004780.1 mouse_genomes_project 1 72491778 72494248 + D230017M19Rik lincRNA lincRNA MGP_C3HHeJ_T0002729.1 MGP_C3HHeJ_G0002595.1 mouse_genomes_project 1 39170242 39176488 - Gm37623 antisense antisense MGP_C3HHeJ_T0022070.1 MGP_C3HHeJ_G0016295.1 mouse_genomes_project 1 138318279 138349301 + MGP_C3HHeJ_P0022070 Csrp1 protein_coding protein_coding MGP_C3HHeJ_T0022071.1 MGP_C3HHeJ_G0016295.1 mouse_genomes_project 1 138326592 138349301 + MGP_C3HHeJ_P0022071 Csrp1 protein_coding protein_coding MGP_C3HHeJ_T0019793.1 MGP_C3HHeJ_G0015830.1 mouse_genomes_project 1 58709179 58719419 + Stradb protein_coding retained_intron MGP_C3HHeJ_T0019794.1 MGP_C3HHeJ_G0015830.1 mouse_genomes_project 1 58709179 58725790 + Stradb protein_coding retained_intron MGP_C3HHeJ_T0019795.1 MGP_C3HHeJ_G0015830.1 mouse_genomes_project 1 58709179 58729455 + MGP_C3HHeJ_P0019795 Stradb protein_coding protein_coding MGP_C3HHeJ_T0019796.1 MGP_C3HHeJ_G0015830.1 mouse_genomes_project 1 58709179 58733659 + MGP_C3HHeJ_P0019796 Stradb protein_coding protein_coding MGP_C3HHeJ_T0019797.1 MGP_C3HHeJ_G0015830.1 mouse_genomes_project 1 58709179 58733066 + MGP_C3HHeJ_P0019797 Stradb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019798.1 MGP_C3HHeJ_G0015830.1 mouse_genomes_project 1 58709179 58732941 + MGP_C3HHeJ_P0019798 Stradb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019799.1 MGP_C3HHeJ_G0015830.1 mouse_genomes_project 1 58729000 58732303 + MGP_C3HHeJ_P0019799 Stradb protein_coding protein_coding MGP_C3HHeJ_T0022557.1 MGP_C3HHeJ_G0016388.1 mouse_genomes_project 1 159634274 159652256 + MGP_C3HHeJ_P0022557 Nphs2 protein_coding protein_coding MGP_C3HHeJ_T0022558.1 MGP_C3HHeJ_G0016388.1 mouse_genomes_project 1 159634590 159650652 + MGP_C3HHeJ_P0022558 Nphs2 protein_coding protein_coding MGP_C3HHeJ_T0098323.1 MGP_C3HHeJ_G0036534.1 mouse_genomes_project 1 107207635 107208088 - Gm28404 sense_intronic sense_intronic MGP_C3HHeJ_T0002743.1 MGP_C3HHeJ_G0002607.1 mouse_genomes_project 1 57860920 57930917 - Gm15759 antisense antisense MGP_C3HHeJ_T0021424.1 MGP_C3HHeJ_G0016159.1 mouse_genomes_project 1 120302070 120313995 + MGP_C3HHeJ_P0021424 Nifk protein_coding protein_coding MGP_C3HHeJ_T0021425.1 MGP_C3HHeJ_G0016159.1 mouse_genomes_project 1 120302085 120313114 + MGP_C3HHeJ_P0021425 Nifk protein_coding protein_coding MGP_C3HHeJ_T0021426.1 MGP_C3HHeJ_G0016159.1 mouse_genomes_project 1 120302384 120309553 + MGP_C3HHeJ_P0021426 Nifk protein_coding protein_coding MGP_C3HHeJ_T0005595.1 MGP_C3HHeJ_G0004701.1 mouse_genomes_project 1 28704619 28706023 - Gm9898 lincRNA lincRNA MGP_C3HHeJ_T0020369.1 MGP_C3HHeJ_G0015941.1 mouse_genomes_project 1 75423379 75428509 + MGP_C3HHeJ_P0020369 Fam134a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020370.1 MGP_C3HHeJ_G0015941.1 mouse_genomes_project 1 75423387 75428513 + MGP_C3HHeJ_P0020370 Fam134a protein_coding protein_coding MGP_C3HHeJ_T0020371.1 MGP_C3HHeJ_G0015941.1 mouse_genomes_project 1 75423395 75428509 + MGP_C3HHeJ_P0020371 Fam134a protein_coding protein_coding MGP_C3HHeJ_T0020372.1 MGP_C3HHeJ_G0015941.1 mouse_genomes_project 1 75423581 75425264 + MGP_C3HHeJ_P0020372 Fam134a protein_coding protein_coding MGP_C3HHeJ_T0020373.1 MGP_C3HHeJ_G0015941.1 mouse_genomes_project 1 75423766 75428507 + MGP_C3HHeJ_P0020373 Fam134a protein_coding protein_coding MGP_C3HHeJ_T0020374.1 MGP_C3HHeJ_G0015941.1 mouse_genomes_project 1 75423783 75424977 + MGP_C3HHeJ_P0020374 Fam134a protein_coding protein_coding MGP_C3HHeJ_T0020375.1 MGP_C3HHeJ_G0015941.1 mouse_genomes_project 1 75423979 75424709 + Fam134a protein_coding retained_intron MGP_C3HHeJ_T0020376.1 MGP_C3HHeJ_G0015941.1 mouse_genomes_project 1 75425903 75426361 + MGP_C3HHeJ_P0020376 Fam134a protein_coding protein_coding MGP_C3HHeJ_T0023224.1 MGP_C3HHeJ_G0016523.1 mouse_genomes_project 1 175286166 175314076 + MGP_C3HHeJ_P0023224 Nectin4 protein_coding protein_coding MGP_C3HHeJ_T0023225.1 MGP_C3HHeJ_G0016523.1 mouse_genomes_project 1 175286419 175314387 + MGP_C3HHeJ_P0023225 Nectin4 protein_coding protein_coding MGP_C3HHeJ_T0023226.1 MGP_C3HHeJ_G0016523.1 mouse_genomes_project 1 175286422 175314074 + MGP_C3HHeJ_P0023226 Nectin4 protein_coding protein_coding MGP_C3HHeJ_T0020644.1 MGP_C3HHeJ_G0015984.1 mouse_genomes_project 1 82966463 83114992 - MGP_C3HHeJ_P0020644 Col4a4 protein_coding protein_coding MGP_C3HHeJ_T0020645.1 MGP_C3HHeJ_G0015984.1 mouse_genomes_project 1 83062803 83114935 - Col4a4 protein_coding retained_intron MGP_C3HHeJ_T0000450.1 MGP_C3HHeJ_G0000397.1 mouse_genomes_project 1 59200509 59202147 - TEC TEC MGP_C3HHeJ_T0005910.1 MGP_C3HHeJ_G0004943.1 mouse_genomes_project 1 170097525 170099554 - Gm15853 lincRNA lincRNA MGP_C3HHeJ_T0101593.1 MGP_C3HHeJ_G0039559.1 mouse_genomes_project 1 177427652 177427904 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005708.1 MGP_C3HHeJ_G0004781.1 mouse_genomes_project 1 73562314 73598871 + Gm29185 lincRNA lincRNA MGP_C3HHeJ_T0005692.1 MGP_C3HHeJ_G0004771.1 mouse_genomes_project 1 67851321 67867099 + Gm15669 lincRNA lincRNA MGP_C3HHeJ_T0023572.1 MGP_C3HHeJ_G0016624.1 mouse_genomes_project 1 184628111 184689923 - MGP_C3HHeJ_P0023572 Gm1305 protein_coding protein_coding MGP_C3HHeJ_T0000353.1 MGP_C3HHeJ_G0000303.1 mouse_genomes_project 1 10594744 10596995 - TEC TEC MGP_C3HHeJ_T0000342.1 MGP_C3HHeJ_G0000292.1 mouse_genomes_project 1 7339785 7341507 - TEC TEC MGP_C3HHeJ_T0000707.1 MGP_C3HHeJ_G0000652.1 mouse_genomes_project 1 172145434 172147710 - TEC TEC MGP_C3HHeJ_T0011773.1 MGP_C3HHeJ_G0009877.1 mouse_genomes_project 1 4568705 4569882 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020538.1 MGP_C3HHeJ_G0015961.1 mouse_genomes_project 1 75798165 75801455 + MGP_C3HHeJ_P0020538 Inha protein_coding protein_coding MGP_C3HHeJ_T0023435.1 MGP_C3HHeJ_G0016592.1 mouse_genomes_project 1 178976212 178977222 + MGP_C3HHeJ_P0023435 Olfr248 protein_coding protein_coding MGP_C3HHeJ_T0012202.1 MGP_C3HHeJ_G0010306.1 mouse_genomes_project 1 161018525 161018698 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023803.1 MGP_C3HHeJ_G0016669.1 mouse_genomes_project 1 189857083 189862559 - MGP_C3HHeJ_P0023803 Hlx protein_coding protein_coding MGP_C3HHeJ_T0023804.1 MGP_C3HHeJ_G0016669.1 mouse_genomes_project 1 189857090 189861540 - MGP_C3HHeJ_P0023804 Hlx protein_coding protein_coding MGP_C3HHeJ_T0011147.1 MGP_C3HHeJ_G0009280.1 mouse_genomes_project 1 30838188 30838480 + Gm23024 misc_RNA misc_RNA MGP_C3HHeJ_T0020351.1 MGP_C3HHeJ_G0015936.1 mouse_genomes_project 1 75245176 75278579 - MGP_C3HHeJ_P0020351 Ccdc108 protein_coding protein_coding MGP_C3HHeJ_T0020352.1 MGP_C3HHeJ_G0015936.1 mouse_genomes_project 1 75265311 75278574 - Ccdc108 protein_coding retained_intron MGP_C3HHeJ_T0020353.1 MGP_C3HHeJ_G0015936.1 mouse_genomes_project 1 75266400 75278572 - Ccdc108 protein_coding retained_intron MGP_C3HHeJ_T0020292.1 MGP_C3HHeJ_G0015924.1 mouse_genomes_project 1 74892425 74915203 - MGP_C3HHeJ_P0020292 Zfp142 protein_coding protein_coding MGP_C3HHeJ_T0020293.1 MGP_C3HHeJ_G0015924.1 mouse_genomes_project 1 74893724 74915200 - MGP_C3HHeJ_P0020293 Zfp142 protein_coding protein_coding MGP_C3HHeJ_T0020294.1 MGP_C3HHeJ_G0015924.1 mouse_genomes_project 1 74893800 74915320 - MGP_C3HHeJ_P0020294 Zfp142 protein_coding protein_coding MGP_C3HHeJ_T0020295.1 MGP_C3HHeJ_G0015924.1 mouse_genomes_project 1 74893981 74915421 - MGP_C3HHeJ_P0020295 Zfp142 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020296.1 MGP_C3HHeJ_G0015924.1 mouse_genomes_project 1 74894167 74912848 - MGP_C3HHeJ_P0020296 Zfp142 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020297.1 MGP_C3HHeJ_G0015924.1 mouse_genomes_project 1 74909417 74915370 - Zfp142 protein_coding retained_intron MGP_C3HHeJ_T0020298.1 MGP_C3HHeJ_G0015924.1 mouse_genomes_project 1 74909424 74915127 - Zfp142 protein_coding retained_intron MGP_C3HHeJ_T0020299.1 MGP_C3HHeJ_G0015924.1 mouse_genomes_project 1 74912769 74915308 - Zfp142 protein_coding processed_transcript MGP_C3HHeJ_T0022372.1 MGP_C3HHeJ_G0016352.1 mouse_genomes_project 1 155036281 155280043 - MGP_C3HHeJ_P0022372 1700025G04Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022373.1 MGP_C3HHeJ_G0016352.1 mouse_genomes_project 1 155069165 155280198 - MGP_C3HHeJ_P0022373 1700025G04Rik protein_coding protein_coding MGP_C3HHeJ_T0022374.1 MGP_C3HHeJ_G0016352.1 mouse_genomes_project 1 155077566 155106415 - 1700025G04Rik protein_coding retained_intron MGP_C3HHeJ_T0022375.1 MGP_C3HHeJ_G0016352.1 mouse_genomes_project 1 155077903 155245315 - MGP_C3HHeJ_P0022375 1700025G04Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000620.1 MGP_C3HHeJ_G0000566.1 mouse_genomes_project 1 140634730 140637751 + TEC TEC MGP_C3HHeJ_T0000621.1 MGP_C3HHeJ_G0000566.1 mouse_genomes_project 1 140635649 140637751 + TEC TEC MGP_C3HHeJ_T0011949.1 MGP_C3HHeJ_G0010053.1 mouse_genomes_project 1 56881094 56882071 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098619.1 MGP_C3HHeJ_G0036813.1 mouse_genomes_project 1 63173409 63173513 - Gm23448 snRNA snRNA MGP_C3HHeJ_T0020559.1 MGP_C3HHeJ_G0015964.1 mouse_genomes_project 1 77721333 77865659 - MGP_C3HHeJ_P0020559 Epha4 protein_coding protein_coding MGP_C3HHeJ_T0020560.1 MGP_C3HHeJ_G0015964.1 mouse_genomes_project 1 77721337 77865650 - MGP_C3HHeJ_P0020560 Epha4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020561.1 MGP_C3HHeJ_G0015964.1 mouse_genomes_project 1 77727273 77865659 - MGP_C3HHeJ_P0020561 Epha4 protein_coding protein_coding MGP_C3HHeJ_T0020562.1 MGP_C3HHeJ_G0015964.1 mouse_genomes_project 1 77727752 77731752 - MGP_C3HHeJ_P0020562 Epha4 protein_coding protein_coding MGP_C3HHeJ_T0020563.1 MGP_C3HHeJ_G0015964.1 mouse_genomes_project 1 77727770 77865650 - MGP_C3HHeJ_P0020563 Epha4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020564.1 MGP_C3HHeJ_G0015964.1 mouse_genomes_project 1 77752064 77865656 - Epha4 protein_coding retained_intron MGP_C3HHeJ_T0020565.1 MGP_C3HHeJ_G0015964.1 mouse_genomes_project 1 77756397 77865654 - MGP_C3HHeJ_P0020565 Epha4 protein_coding protein_coding MGP_C3HHeJ_T0022463.1 MGP_C3HHeJ_G0016371.1 mouse_genomes_project 1 157150451 157163495 + MGP_C3HHeJ_P0022463 protein_coding protein_coding MGP_C3HHeJ_T0020359.1 MGP_C3HHeJ_G0015939.1 mouse_genomes_project 1 75406140 75414495 - MGP_C3HHeJ_P0020359 Slc23a3 protein_coding protein_coding MGP_C3HHeJ_T0020360.1 MGP_C3HHeJ_G0015939.1 mouse_genomes_project 1 75412316 75414151 - Slc23a3 protein_coding retained_intron MGP_C3HHeJ_T0000781.1 MGP_C3HHeJ_G0000723.1 mouse_genomes_project 1 200750975 200753691 - TEC TEC MGP_C3HHeJ_T0019256.1 MGP_C3HHeJ_G0015725.1 mouse_genomes_project 1 37384968 37391859 + MGP_C3HHeJ_P0019256 Pdcl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019257.1 MGP_C3HHeJ_G0015725.1 mouse_genomes_project 1 37384971 37393585 + MGP_C3HHeJ_P0019257 Pdcl3 protein_coding protein_coding MGP_C3HHeJ_T0019258.1 MGP_C3HHeJ_G0015725.1 mouse_genomes_project 1 37392101 37393588 + Pdcl3 protein_coding retained_intron MGP_C3HHeJ_T0011146.1 MGP_C3HHeJ_G0009279.1 mouse_genomes_project 1 27216318 27216430 - Gm25586 misc_RNA misc_RNA MGP_C3HHeJ_T0012010.1 MGP_C3HHeJ_G0010114.1 mouse_genomes_project 1 75863859 75864351 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020392.1 MGP_C3HHeJ_G0015944.1 mouse_genomes_project 1 75462220 75474093 - MGP_C3HHeJ_P0020392 Atg9a protein_coding protein_coding MGP_C3HHeJ_T0020393.1 MGP_C3HHeJ_G0015944.1 mouse_genomes_project 1 75462225 75474363 - MGP_C3HHeJ_P0020393 Atg9a protein_coding protein_coding MGP_C3HHeJ_T0020394.1 MGP_C3HHeJ_G0015944.1 mouse_genomes_project 1 75462225 75474090 - MGP_C3HHeJ_P0020394 Atg9a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020395.1 MGP_C3HHeJ_G0015944.1 mouse_genomes_project 1 75462225 75472549 - MGP_C3HHeJ_P0020395 Atg9a protein_coding protein_coding MGP_C3HHeJ_T0020396.1 MGP_C3HHeJ_G0015944.1 mouse_genomes_project 1 75462226 75474090 - MGP_C3HHeJ_P0020396 Atg9a protein_coding protein_coding MGP_C3HHeJ_T0020397.1 MGP_C3HHeJ_G0015944.1 mouse_genomes_project 1 75465167 75468225 - MGP_C3HHeJ_P0020397 Atg9a protein_coding protein_coding MGP_C3HHeJ_T0020398.1 MGP_C3HHeJ_G0015944.1 mouse_genomes_project 1 75469723 75473892 - Atg9a protein_coding retained_intron MGP_C3HHeJ_T0020399.1 MGP_C3HHeJ_G0015944.1 mouse_genomes_project 1 75471935 75474129 - Atg9a protein_coding retained_intron MGP_C3HHeJ_T0020400.1 MGP_C3HHeJ_G0015944.1 mouse_genomes_project 1 75472283 75473881 - MGP_C3HHeJ_P0020400 Atg9a protein_coding protein_coding MGP_C3HHeJ_T0023099.1 MGP_C3HHeJ_G0016499.1 mouse_genomes_project 1 174760163 174760985 + MGP_C3HHeJ_P0023099 Gm26620 protein_coding protein_coding MGP_C3HHeJ_T0012149.1 MGP_C3HHeJ_G0010253.1 mouse_genomes_project 1 139458793 139459330 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020180.1 MGP_C3HHeJ_G0015901.1 mouse_genomes_project 1 72653897 72770075 - MGP_C3HHeJ_P0020180 March4 protein_coding protein_coding MGP_C3HHeJ_T0011955.1 MGP_C3HHeJ_G0010059.1 mouse_genomes_project 1 58404841 58415976 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023582.1 MGP_C3HHeJ_G0016626.1 mouse_genomes_project 1 184749015 184750316 + MGP_C3HHeJ_P0023582 Gm10518 protein_coding protein_coding MGP_C3HHeJ_T0005785.1 MGP_C3HHeJ_G0004845.1 mouse_genomes_project 1 107642978 107653948 - Gm7160 lincRNA lincRNA MGP_C3HHeJ_T0005786.1 MGP_C3HHeJ_G0004845.1 mouse_genomes_project 1 107652892 107653918 - Gm7160 lincRNA lincRNA MGP_C3HHeJ_T0023460.1 MGP_C3HHeJ_G0016599.1 mouse_genomes_project 1 180218504 180259252 + MGP_C3HHeJ_P0023460 Kmo protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023461.1 MGP_C3HHeJ_G0016599.1 mouse_genomes_project 1 180230148 180260143 + MGP_C3HHeJ_P0023461 Kmo protein_coding protein_coding MGP_C3HHeJ_T0023462.1 MGP_C3HHeJ_G0016599.1 mouse_genomes_project 1 180230153 180253367 + Kmo protein_coding retained_intron MGP_C3HHeJ_T0023463.1 MGP_C3HHeJ_G0016599.1 mouse_genomes_project 1 180230178 180235494 + Kmo protein_coding processed_transcript MGP_C3HHeJ_T0023464.1 MGP_C3HHeJ_G0016599.1 mouse_genomes_project 1 180230332 180261357 + MGP_C3HHeJ_P0023464 Kmo protein_coding protein_coding MGP_C3HHeJ_T0023465.1 MGP_C3HHeJ_G0016599.1 mouse_genomes_project 1 180230391 180247813 + Kmo protein_coding processed_transcript MGP_C3HHeJ_T0019458.1 MGP_C3HHeJ_G0015769.1 mouse_genomes_project 1 44804850 44833988 + protein_coding processed_transcript MGP_C3HHeJ_T0005790.1 MGP_C3HHeJ_G0004849.1 mouse_genomes_project 1 109460484 109466842 + Gm15389 lincRNA lincRNA MGP_C3HHeJ_T0018575.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 5415977 6405810 - MGP_C3HHeJ_P0018575 Sntg1 protein_coding protein_coding MGP_C3HHeJ_T0018576.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 5415977 6405145 - MGP_C3HHeJ_P0018576 Sntg1 protein_coding protein_coding MGP_C3HHeJ_T0018577.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 5415977 6405436 - MGP_C3HHeJ_P0018577 Sntg1 protein_coding protein_coding MGP_C3HHeJ_T0018578.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 5417180 6406451 - MGP_C3HHeJ_P0018578 Sntg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018579.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 5417685 5530401 - Sntg1 protein_coding processed_transcript MGP_C3HHeJ_T0018580.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 5417927 5530360 - Sntg1 protein_coding processed_transcript MGP_C3HHeJ_T0018581.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 5417977 5881909 - MGP_C3HHeJ_P0018581 Sntg1 protein_coding protein_coding MGP_C3HHeJ_T0018582.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 5756706 6405854 - MGP_C3HHeJ_P0018582 Sntg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018583.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 5861799 6406081 - Sntg1 protein_coding retained_intron MGP_C3HHeJ_T0018584.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 6052123 6054238 - Sntg1 protein_coding retained_intron MGP_C3HHeJ_T0018585.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 6052386 6404798 - Sntg1 protein_coding processed_transcript MGP_C3HHeJ_T0019878.1 MGP_C3HHeJ_G0015844.1 mouse_genomes_project 1 59904029 59958723 + MGP_C3HHeJ_P0019878 Carf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019879.1 MGP_C3HHeJ_G0015844.1 mouse_genomes_project 1 59904046 59914845 + Carf protein_coding retained_intron MGP_C3HHeJ_T0019880.1 MGP_C3HHeJ_G0015844.1 mouse_genomes_project 1 59904046 59933998 + MGP_C3HHeJ_P0019880 Carf protein_coding protein_coding MGP_C3HHeJ_T0019881.1 MGP_C3HHeJ_G0015844.1 mouse_genomes_project 1 59907028 59910264 + Carf protein_coding retained_intron MGP_C3HHeJ_T0019882.1 MGP_C3HHeJ_G0015844.1 mouse_genomes_project 1 59908461 59958378 + MGP_C3HHeJ_P0019882 Carf protein_coding unknown_likely_coding MGP_C3HHeJ_T0019883.1 MGP_C3HHeJ_G0015844.1 mouse_genomes_project 1 59913885 59958491 + MGP_C3HHeJ_P0019883 Carf protein_coding protein_coding MGP_C3HHeJ_T0019884.1 MGP_C3HHeJ_G0015844.1 mouse_genomes_project 1 59913885 59958491 + MGP_C3HHeJ_P0019884 Carf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019885.1 MGP_C3HHeJ_G0015844.1 mouse_genomes_project 1 59947258 59949674 + Carf protein_coding retained_intron MGP_C3HHeJ_T0019886.1 MGP_C3HHeJ_G0015844.1 mouse_genomes_project 1 59948910 59955718 + MGP_C3HHeJ_P0019886 Carf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012206.1 MGP_C3HHeJ_G0010310.1 mouse_genomes_project 1 164441839 164442304 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012201.1 MGP_C3HHeJ_G0010305.1 mouse_genomes_project 1 161017836 161018034 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023203.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175242161 175255940 + MGP_C3HHeJ_P0023203 Dedd protein_coding protein_coding MGP_C3HHeJ_T0023204.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175242415 175255934 + MGP_C3HHeJ_P0023204 Dedd protein_coding protein_coding MGP_C3HHeJ_T0023205.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175242424 175255295 + MGP_C3HHeJ_P0023205 Dedd protein_coding protein_coding MGP_C3HHeJ_T0023206.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175242582 175253908 + MGP_C3HHeJ_P0023206 Dedd protein_coding protein_coding MGP_C3HHeJ_T0023207.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175242623 175254563 + MGP_C3HHeJ_P0023207 Dedd protein_coding protein_coding MGP_C3HHeJ_T0023208.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175243724 175252023 + MGP_C3HHeJ_P0023208 Dedd protein_coding protein_coding MGP_C3HHeJ_T0023209.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175244001 175251952 + MGP_C3HHeJ_P0023209 Dedd protein_coding protein_coding MGP_C3HHeJ_T0023210.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175245069 175255229 + MGP_C3HHeJ_P0023210 Dedd protein_coding protein_coding MGP_C3HHeJ_T0023211.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175250422 175253745 + Dedd protein_coding retained_intron MGP_C3HHeJ_T0023212.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175251596 175253838 + MGP_C3HHeJ_P0023212 Dedd protein_coding protein_coding MGP_C3HHeJ_T0011908.1 MGP_C3HHeJ_G0010012.1 mouse_genomes_project 1 44503285 44504466 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012122.1 MGP_C3HHeJ_G0010226.1 mouse_genomes_project 1 124044782 124046090 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011871.1 MGP_C3HHeJ_G0009975.1 mouse_genomes_project 1 32742705 32743180 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101086.1 MGP_C3HHeJ_G0039277.1 mouse_genomes_project 1 117613551 117629200 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101087.1 MGP_C3HHeJ_G0039277.1 mouse_genomes_project 1 117613966 117615153 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101088.1 MGP_C3HHeJ_G0039277.1 mouse_genomes_project 1 117614394 117629205 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0020750.1 MGP_C3HHeJ_G0016004.1 mouse_genomes_project 1 86627142 86649916 - MGP_C3HHeJ_P0020750 Gpr55 protein_coding protein_coding MGP_C3HHeJ_T0011938.1 MGP_C3HHeJ_G0010042.1 mouse_genomes_project 1 52620192 52620515 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011881.1 MGP_C3HHeJ_G0009985.1 mouse_genomes_project 1 33198281 33198516 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000553.1 MGP_C3HHeJ_G0000500.1 mouse_genomes_project 1 107890441 107895394 + TEC TEC MGP_C3HHeJ_T0012062.1 MGP_C3HHeJ_G0010166.1 mouse_genomes_project 1 101742115 101743818 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022988.1 MGP_C3HHeJ_G0016468.1 mouse_genomes_project 1 169921804 169959651 - MGP_C3HHeJ_P0022988 Mael protein_coding protein_coding MGP_C3HHeJ_T0022989.1 MGP_C3HHeJ_G0016468.1 mouse_genomes_project 1 169921988 169959648 - MGP_C3HHeJ_P0022989 Mael protein_coding protein_coding MGP_C3HHeJ_T0000419.1 MGP_C3HHeJ_G0000366.1 mouse_genomes_project 1 35836558 35839312 - TEC TEC MGP_C3HHeJ_T0021587.1 MGP_C3HHeJ_G0016190.1 mouse_genomes_project 1 129962875 130002055 + MGP_C3HHeJ_P0021587 Acmsd protein_coding protein_coding MGP_C3HHeJ_T0021588.1 MGP_C3HHeJ_G0016190.1 mouse_genomes_project 1 129990192 130002055 + Acmsd protein_coding processed_transcript MGP_C3HHeJ_T0012251.1 MGP_C3HHeJ_G0010355.1 mouse_genomes_project 1 187227670 187228454 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019579.1 MGP_C3HHeJ_G0015791.1 mouse_genomes_project 1 52601601 52610457 - MGP_C3HHeJ_P0019579 Asnsd1 protein_coding protein_coding MGP_C3HHeJ_T0019580.1 MGP_C3HHeJ_G0015791.1 mouse_genomes_project 1 52601629 52610457 - MGP_C3HHeJ_P0019580 Asnsd1 protein_coding protein_coding MGP_C3HHeJ_T0019581.1 MGP_C3HHeJ_G0015791.1 mouse_genomes_project 1 52605535 52610457 - MGP_C3HHeJ_P0019581 Asnsd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019582.1 MGP_C3HHeJ_G0015791.1 mouse_genomes_project 1 52605942 52608980 - MGP_C3HHeJ_P0019582 Asnsd1 protein_coding protein_coding MGP_C3HHeJ_T0019583.1 MGP_C3HHeJ_G0015791.1 mouse_genomes_project 1 52608021 52610275 - Asnsd1 protein_coding retained_intron MGP_C3HHeJ_T0002791.1 MGP_C3HHeJ_G0002643.1 mouse_genomes_project 1 94068803 94071190 - 5033417F24Rik antisense antisense MGP_C3HHeJ_T0019638.1 MGP_C3HHeJ_G0015802.1 mouse_genomes_project 1 54621287 54648589 + MGP_C3HHeJ_P0019638 Mob4 protein_coding protein_coding MGP_C3HHeJ_T0019639.1 MGP_C3HHeJ_G0015802.1 mouse_genomes_project 1 54621287 54646562 + MGP_C3HHeJ_P0019639 Mob4 protein_coding protein_coding MGP_C3HHeJ_T0019640.1 MGP_C3HHeJ_G0015802.1 mouse_genomes_project 1 54621316 54648588 + Mob4 protein_coding retained_intron MGP_C3HHeJ_T0019641.1 MGP_C3HHeJ_G0015802.1 mouse_genomes_project 1 54621338 54645623 + MGP_C3HHeJ_P0019641 Mob4 protein_coding protein_coding MGP_C3HHeJ_T0019642.1 MGP_C3HHeJ_G0015802.1 mouse_genomes_project 1 54621343 54645983 + MGP_C3HHeJ_P0019642 Mob4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019643.1 MGP_C3HHeJ_G0015802.1 mouse_genomes_project 1 54621376 54645407 + MGP_C3HHeJ_P0019643 Mob4 protein_coding protein_coding MGP_C3HHeJ_T0019644.1 MGP_C3HHeJ_G0015802.1 mouse_genomes_project 1 54621382 54636123 + Mob4 protein_coding retained_intron MGP_C3HHeJ_T0019645.1 MGP_C3HHeJ_G0015802.1 mouse_genomes_project 1 54639582 54640470 + Mob4 protein_coding retained_intron MGP_C3HHeJ_T0020940.1 MGP_C3HHeJ_G0016043.1 mouse_genomes_project 1 88975080 89122343 + MGP_C3HHeJ_P0020940 protein_coding protein_coding MGP_C3HHeJ_T0020944.1 MGP_C3HHeJ_G0016043.1 mouse_genomes_project 1 88999196 89122337 + MGP_C3HHeJ_P0020944 protein_coding protein_coding MGP_C3HHeJ_T0012141.1 MGP_C3HHeJ_G0010245.1 mouse_genomes_project 1 134723440 134723797 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000528.1 MGP_C3HHeJ_G0000475.1 mouse_genomes_project 1 88748074 88751067 + TEC TEC MGP_C3HHeJ_T0099892.1 MGP_C3HHeJ_G0038086.1 mouse_genomes_project 1 151439134 151439263 - Gm22966 snoRNA snoRNA MGP_C3HHeJ_T0016760.1 MGP_C3HHeJ_G0014853.1 mouse_genomes_project 1 37988104 37992540 - Gm15832 processed_transcript processed_transcript MGP_C3HHeJ_T0021251.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94948959 94974020 + MGP_C3HHeJ_P0021251 Atg4b protein_coding protein_coding MGP_C3HHeJ_T0021252.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94952829 94991097 + MGP_C3HHeJ_P0021252 Atg4b protein_coding protein_coding MGP_C3HHeJ_T0021253.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94952912 94976625 + MGP_C3HHeJ_P0021253 Atg4b protein_coding protein_coding MGP_C3HHeJ_T0021254.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94952959 94985408 + MGP_C3HHeJ_P0021254 Atg4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021255.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94952969 94988661 + Atg4b protein_coding retained_intron MGP_C3HHeJ_T0021256.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94953086 94965827 + Atg4b protein_coding processed_transcript MGP_C3HHeJ_T0021257.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94965803 94973785 + Atg4b protein_coding retained_intron MGP_C3HHeJ_T0021258.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94984827 94985564 + Atg4b protein_coding retained_intron MGP_C3HHeJ_T0021259.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94985281 94988359 + MGP_C3HHeJ_P0021259 Atg4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021260.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94986065 94987063 + Atg4b protein_coding retained_intron MGP_C3HHeJ_T0021261.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94986700 94988381 + Atg4b protein_coding retained_intron MGP_C3HHeJ_T0023051.1 MGP_C3HHeJ_G0016486.1 mouse_genomes_project 1 173557444 173563989 - MGP_C3HHeJ_P0023051 Rgs4 protein_coding protein_coding MGP_C3HHeJ_T0023052.1 MGP_C3HHeJ_G0016486.1 mouse_genomes_project 1 173557810 173563991 - MGP_C3HHeJ_P0023052 Rgs4 protein_coding protein_coding MGP_C3HHeJ_T0023053.1 MGP_C3HHeJ_G0016486.1 mouse_genomes_project 1 173560208 173563972 - Rgs4 protein_coding retained_intron MGP_C3HHeJ_T0005747.1 MGP_C3HHeJ_G0004811.1 mouse_genomes_project 1 89525778 89536144 + Gm19589 lincRNA lincRNA MGP_C3HHeJ_T0012030.1 MGP_C3HHeJ_G0010134.1 mouse_genomes_project 1 83880550 83881338 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011794.1 MGP_C3HHeJ_G0009898.1 mouse_genomes_project 1 8018834 8019589 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002746.1 MGP_C3HHeJ_G0002609.1 mouse_genomes_project 1 58857477 58859767 + G730003C15Rik antisense antisense MGP_C3HHeJ_T0002747.1 MGP_C3HHeJ_G0002609.1 mouse_genomes_project 1 58857477 58859769 + G730003C15Rik antisense antisense MGP_C3HHeJ_T0000706.1 MGP_C3HHeJ_G0000651.1 mouse_genomes_project 1 172132819 172134519 - TEC TEC MGP_C3HHeJ_T0012182.1 MGP_C3HHeJ_G0010286.1 mouse_genomes_project 1 154261983 154262906 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002792.1 MGP_C3HHeJ_G0002644.1 mouse_genomes_project 1 94093940 94112040 - 9430060I03Rik antisense antisense MGP_C3HHeJ_T0000668.1 MGP_C3HHeJ_G0000613.1 mouse_genomes_project 1 160396623 160398952 + TEC TEC MGP_C3HHeJ_T0022149.1 MGP_C3HHeJ_G0016311.1 mouse_genomes_project 1 139090653 139120527 + Kif14 protein_coding retained_intron MGP_C3HHeJ_T0022150.1 MGP_C3HHeJ_G0016311.1 mouse_genomes_project 1 139092245 139158802 + MGP_C3HHeJ_P0022150 Kif14 protein_coding protein_coding MGP_C3HHeJ_T0022151.1 MGP_C3HHeJ_G0016311.1 mouse_genomes_project 1 139092245 139154937 + MGP_C3HHeJ_P0022151 Kif14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022152.1 MGP_C3HHeJ_G0016311.1 mouse_genomes_project 1 139092268 139158802 + MGP_C3HHeJ_P0022152 Kif14 protein_coding protein_coding MGP_C3HHeJ_T0022153.1 MGP_C3HHeJ_G0016311.1 mouse_genomes_project 1 139093313 139096032 + Kif14 protein_coding retained_intron MGP_C3HHeJ_T0022154.1 MGP_C3HHeJ_G0016311.1 mouse_genomes_project 1 139100675 139104842 + Kif14 protein_coding processed_transcript MGP_C3HHeJ_T0022155.1 MGP_C3HHeJ_G0016311.1 mouse_genomes_project 1 139100675 139104842 + Kif14 protein_coding processed_transcript MGP_C3HHeJ_T0022156.1 MGP_C3HHeJ_G0016311.1 mouse_genomes_project 1 139100675 139104842 + MGP_C3HHeJ_P0022156 Kif14 protein_coding protein_coding MGP_C3HHeJ_T0098328.1 MGP_C3HHeJ_G0036539.1 mouse_genomes_project 1 146709029 146712694 + Gm29170 sense_intronic sense_intronic MGP_C3HHeJ_T0000399.1 MGP_C3HHeJ_G0000347.1 mouse_genomes_project 1 30638454 30641823 + TEC TEC MGP_C3HHeJ_T0023337.1 MGP_C3HHeJ_G0016549.1 mouse_genomes_project 1 176623893 176632563 - MGP_C3HHeJ_P0023337 Kcnj9 protein_coding protein_coding MGP_C3HHeJ_T0023338.1 MGP_C3HHeJ_G0016549.1 mouse_genomes_project 1 176625494 176632527 - MGP_C3HHeJ_P0023338 Kcnj9 protein_coding protein_coding MGP_C3HHeJ_T0023339.1 MGP_C3HHeJ_G0016549.1 mouse_genomes_project 1 176628550 176631352 - Kcnj9 protein_coding retained_intron MGP_C3HHeJ_T0101591.1 MGP_C3HHeJ_G0039557.1 mouse_genomes_project 1 177378973 177379832 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012207.1 MGP_C3HHeJ_G0010311.1 mouse_genomes_project 1 164875138 164876335 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000505.1 MGP_C3HHeJ_G0000452.1 mouse_genomes_project 1 82625030 82626834 + TEC TEC MGP_C3HHeJ_T0023387.1 MGP_C3HHeJ_G0016567.1 mouse_genomes_project 1 177551910 177557837 - MGP_C3HHeJ_P0023387 Fcer1a protein_coding protein_coding MGP_C3HHeJ_T0023388.1 MGP_C3HHeJ_G0016567.1 mouse_genomes_project 1 177552019 177557817 - MGP_C3HHeJ_P0023388 Fcer1a protein_coding protein_coding MGP_C3HHeJ_T0023031.1 MGP_C3HHeJ_G0016479.1 mouse_genomes_project 1 171128308 171153322 - MGP_C3HHeJ_P0023031 Mgst3 protein_coding protein_coding MGP_C3HHeJ_T0020966.1 MGP_C3HHeJ_G0016053.1 mouse_genomes_project 1 89473381 89483554 - MGP_C3HHeJ_P0020966 Glrp1 protein_coding protein_coding MGP_C3HHeJ_T0011991.1 MGP_C3HHeJ_G0010095.1 mouse_genomes_project 1 65488884 65489658 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000605.1 MGP_C3HHeJ_G0000551.1 mouse_genomes_project 1 136330570 136332268 + TEC TEC MGP_C3HHeJ_T0019661.1 MGP_C3HHeJ_G0015807.1 mouse_genomes_project 1 56191012 56192404 - MGP_C3HHeJ_P0019661 Hsfy2 protein_coding protein_coding MGP_C3HHeJ_T0011821.1 MGP_C3HHeJ_G0009925.1 mouse_genomes_project 1 18285134 18286320 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011824.1 MGP_C3HHeJ_G0009928.1 mouse_genomes_project 1 18926608 18926804 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000379.1 MGP_C3HHeJ_G0000327.1 mouse_genomes_project 1 23024655 23027761 - TEC TEC MGP_C3HHeJ_T0099887.1 MGP_C3HHeJ_G0038081.1 mouse_genomes_project 1 140046870 140046967 - Gm23534 snoRNA snoRNA MGP_C3HHeJ_T0005819.1 MGP_C3HHeJ_G0004870.1 mouse_genomes_project 1 126706325 127057150 - lincRNA lincRNA MGP_C3HHeJ_T0021361.1 MGP_C3HHeJ_G0016138.1 mouse_genomes_project 1 108219595 108401083 - MGP_C3HHeJ_P0021361 Bcl2 protein_coding protein_coding MGP_C3HHeJ_T0021362.1 MGP_C3HHeJ_G0016138.1 mouse_genomes_project 1 108397152 108399988 - MGP_C3HHeJ_P0021362 Bcl2 protein_coding protein_coding MGP_C3HHeJ_T0012178.1 MGP_C3HHeJ_G0010282.1 mouse_genomes_project 1 152271240 152272776 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021754.1 MGP_C3HHeJ_G0016229.1 mouse_genomes_project 1 134234231 134237167 + Slc41a1 protein_coding processed_transcript MGP_C3HHeJ_T0021755.1 MGP_C3HHeJ_G0016229.1 mouse_genomes_project 1 134234715 134255745 + MGP_C3HHeJ_P0021755 Slc41a1 protein_coding protein_coding MGP_C3HHeJ_T0021756.1 MGP_C3HHeJ_G0016229.1 mouse_genomes_project 1 134249719 134253509 + Slc41a1 protein_coding retained_intron MGP_C3HHeJ_T0018936.1 MGP_C3HHeJ_G0015669.1 mouse_genomes_project 1 29208506 29242415 + MGP_C3HHeJ_P0018936 Lgsn protein_coding protein_coding MGP_C3HHeJ_T0018937.1 MGP_C3HHeJ_G0015669.1 mouse_genomes_project 1 29223347 29242415 + MGP_C3HHeJ_P0018937 Lgsn protein_coding protein_coding MGP_C3HHeJ_T0000401.1 MGP_C3HHeJ_G0000349.1 mouse_genomes_project 1 31096316 31101323 - TEC TEC MGP_C3HHeJ_T0023652.1 MGP_C3HHeJ_G0016636.1 mouse_genomes_project 1 185795738 185809929 - MGP_C3HHeJ_P0023652 H3f3a protein_coding protein_coding MGP_C3HHeJ_T0023653.1 MGP_C3HHeJ_G0016636.1 mouse_genomes_project 1 185798724 185809831 - MGP_C3HHeJ_P0023653 H3f3a protein_coding protein_coding MGP_C3HHeJ_T0023654.1 MGP_C3HHeJ_G0016636.1 mouse_genomes_project 1 185798724 185810240 - MGP_C3HHeJ_P0023654 H3f3a protein_coding protein_coding MGP_C3HHeJ_T0023655.1 MGP_C3HHeJ_G0016636.1 mouse_genomes_project 1 185806515 185809900 - MGP_C3HHeJ_P0023655 H3f3a protein_coding protein_coding MGP_C3HHeJ_T0023656.1 MGP_C3HHeJ_G0016636.1 mouse_genomes_project 1 185806523 185809900 - MGP_C3HHeJ_P0023656 H3f3a protein_coding protein_coding MGP_C3HHeJ_T0005907.1 MGP_C3HHeJ_G0004940.1 mouse_genomes_project 1 169486678 169487970 - Gm36972 lincRNA lincRNA MGP_C3HHeJ_T0012234.1 MGP_C3HHeJ_G0010338.1 mouse_genomes_project 1 176387918 176388248 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023953.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196417181 196438500 - MGP_C3HHeJ_P0023953 Tatdn3 protein_coding protein_coding MGP_C3HHeJ_T0023954.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196417193 196438472 - MGP_C3HHeJ_P0023954 Tatdn3 protein_coding protein_coding MGP_C3HHeJ_T0023955.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196417197 196438473 - MGP_C3HHeJ_P0023955 Tatdn3 protein_coding protein_coding MGP_C3HHeJ_T0023956.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196417197 196438472 - MGP_C3HHeJ_P0023956 Tatdn3 protein_coding protein_coding MGP_C3HHeJ_T0023957.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196417200 196422300 - Tatdn3 protein_coding retained_intron MGP_C3HHeJ_T0023958.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196417463 196438425 - MGP_C3HHeJ_P0023958 Tatdn3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0023959.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196429123 196433045 - Tatdn3 protein_coding retained_intron MGP_C3HHeJ_T0023960.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196432097 196433640 - Tatdn3 protein_coding retained_intron MGP_C3HHeJ_T0023961.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196432979 196438472 - Tatdn3 protein_coding retained_intron MGP_C3HHeJ_T0023962.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196434252 196438472 - Tatdn3 protein_coding retained_intron MGP_C3HHeJ_T0023543.1 MGP_C3HHeJ_G0016617.1 mouse_genomes_project 1 183289779 183321379 + Efcab2 protein_coding processed_transcript MGP_C3HHeJ_T0023544.1 MGP_C3HHeJ_G0016617.1 mouse_genomes_project 1 183289797 183370798 + MGP_C3HHeJ_P0023544 Efcab2 protein_coding protein_coding MGP_C3HHeJ_T0023545.1 MGP_C3HHeJ_G0016617.1 mouse_genomes_project 1 183332218 183367753 + Efcab2 protein_coding processed_transcript MGP_C3HHeJ_T0023227.1 MGP_C3HHeJ_G0016524.1 mouse_genomes_project 1 175314742 175336156 + Arhgap30 protein_coding retained_intron MGP_C3HHeJ_T0023228.1 MGP_C3HHeJ_G0016524.1 mouse_genomes_project 1 175314742 175336098 + Arhgap30 protein_coding retained_intron MGP_C3HHeJ_T0023229.1 MGP_C3HHeJ_G0016524.1 mouse_genomes_project 1 175314742 175336098 + MGP_C3HHeJ_P0023229 Arhgap30 protein_coding protein_coding MGP_C3HHeJ_T0023230.1 MGP_C3HHeJ_G0016524.1 mouse_genomes_project 1 175314787 175318604 + Arhgap30 protein_coding retained_intron MGP_C3HHeJ_T0023795.1 MGP_C3HHeJ_G0016666.1 mouse_genomes_project 1 188530389 188531031 + Hhipl2 protein_coding processed_transcript MGP_C3HHeJ_T0023796.1 MGP_C3HHeJ_G0016666.1 mouse_genomes_project 1 188530663 188553242 + MGP_C3HHeJ_P0023796 Hhipl2 protein_coding protein_coding MGP_C3HHeJ_T0023797.1 MGP_C3HHeJ_G0016666.1 mouse_genomes_project 1 188530760 188537944 + Hhipl2 protein_coding processed_transcript MGP_C3HHeJ_T0023798.1 MGP_C3HHeJ_G0016666.1 mouse_genomes_project 1 188530965 188552921 + MGP_C3HHeJ_P0023798 Hhipl2 protein_coding protein_coding MGP_C3HHeJ_T0098676.1 MGP_C3HHeJ_G0036870.1 mouse_genomes_project 1 181330173 181330281 + Gm26104 snRNA snRNA MGP_C3HHeJ_T0019185.1 MGP_C3HHeJ_G0015712.1 mouse_genomes_project 1 36116651 36221952 - MGP_C3HHeJ_P0019185 Tsga10 protein_coding protein_coding MGP_C3HHeJ_T0019186.1 MGP_C3HHeJ_G0015712.1 mouse_genomes_project 1 36122977 36212247 - MGP_C3HHeJ_P0019186 Tsga10 protein_coding protein_coding MGP_C3HHeJ_T0019187.1 MGP_C3HHeJ_G0015712.1 mouse_genomes_project 1 36122977 36223302 - MGP_C3HHeJ_P0019187 Tsga10 protein_coding protein_coding MGP_C3HHeJ_T0019188.1 MGP_C3HHeJ_G0015712.1 mouse_genomes_project 1 36150450 36212220 - MGP_C3HHeJ_P0019188 Tsga10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019189.1 MGP_C3HHeJ_G0015712.1 mouse_genomes_project 1 36185962 36221709 - MGP_C3HHeJ_P0019189 Tsga10 protein_coding protein_coding MGP_C3HHeJ_T0019190.1 MGP_C3HHeJ_G0015712.1 mouse_genomes_project 1 36186994 36221946 - MGP_C3HHeJ_P0019190 Tsga10 protein_coding protein_coding MGP_C3HHeJ_T0019191.1 MGP_C3HHeJ_G0015712.1 mouse_genomes_project 1 36187830 36221946 - MGP_C3HHeJ_P0019191 Tsga10 protein_coding protein_coding MGP_C3HHeJ_T0019192.1 MGP_C3HHeJ_G0015712.1 mouse_genomes_project 1 36196933 36200593 - Tsga10 protein_coding retained_intron MGP_C3HHeJ_T0023377.1 MGP_C3HHeJ_G0016560.1 mouse_genomes_project 1 177021905 177024612 + MGP_C3HHeJ_P0023377 Crp protein_coding protein_coding MGP_C3HHeJ_T0023378.1 MGP_C3HHeJ_G0016560.1 mouse_genomes_project 1 177021906 177162309 + Crp protein_coding processed_transcript MGP_C3HHeJ_T0012031.1 MGP_C3HHeJ_G0010135.1 mouse_genomes_project 1 84765927 84766473 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011757.1 MGP_C3HHeJ_G0009861.1 mouse_genomes_project 1 1844451 1845371 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023659.1 MGP_C3HHeJ_G0016638.1 mouse_genomes_project 1 185901592 185907588 + MGP_C3HHeJ_P0023659 Lefty2 protein_coding protein_coding MGP_C3HHeJ_T0023660.1 MGP_C3HHeJ_G0016638.1 mouse_genomes_project 1 185902942 185905972 + Lefty2 protein_coding retained_intron MGP_C3HHeJ_T0005899.1 MGP_C3HHeJ_G0004935.1 mouse_genomes_project 1 168336427 168368126 + Gm37184 lincRNA lincRNA MGP_C3HHeJ_T0099881.1 MGP_C3HHeJ_G0038075.1 mouse_genomes_project 1 125538106 125538237 - Gm24791 snoRNA snoRNA MGP_C3HHeJ_T0018776.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14035384 14050823 - MGP_C3HHeJ_P0018776 Tceb1 protein_coding protein_coding MGP_C3HHeJ_T0018777.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14036425 14050981 - MGP_C3HHeJ_P0018777 Tceb1 protein_coding protein_coding MGP_C3HHeJ_T0018778.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14036800 14050957 - MGP_C3HHeJ_P0018778 Tceb1 protein_coding protein_coding MGP_C3HHeJ_T0018779.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14036827 14050977 - MGP_C3HHeJ_P0018779 Tceb1 protein_coding protein_coding MGP_C3HHeJ_T0018780.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14036849 14050853 - MGP_C3HHeJ_P0018780 Tceb1 protein_coding protein_coding MGP_C3HHeJ_T0018781.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14037001 14041878 - MGP_C3HHeJ_P0018781 Tceb1 protein_coding protein_coding MGP_C3HHeJ_T0018782.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14037131 14050564 - MGP_C3HHeJ_P0018782 Tceb1 protein_coding protein_coding MGP_C3HHeJ_T0018783.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14040670 14050839 - Tceb1 protein_coding retained_intron MGP_C3HHeJ_T0018784.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14040789 14050854 - Tceb1 protein_coding retained_intron MGP_C3HHeJ_T0018785.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14041519 14050817 - Tceb1 protein_coding retained_intron MGP_C3HHeJ_T0018786.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14041574 14050981 - Tceb1 protein_coding retained_intron MGP_C3HHeJ_T0021304.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99155814 99199674 - MGP_C3HHeJ_P0021304 Pam protein_coding protein_coding MGP_C3HHeJ_T0021305.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99180048 99448933 - MGP_C3HHeJ_P0021305 Pam protein_coding protein_coding MGP_C3HHeJ_T0021306.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99180049 99448944 - MGP_C3HHeJ_P0021306 Pam protein_coding protein_coding MGP_C3HHeJ_T0021307.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99180054 99328187 - MGP_C3HHeJ_P0021307 Pam protein_coding protein_coding MGP_C3HHeJ_T0021308.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99180666 99199252 - MGP_C3HHeJ_P0021308 Pam protein_coding protein_coding MGP_C3HHeJ_T0021309.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99180926 99193510 - Pam protein_coding retained_intron MGP_C3HHeJ_T0021310.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99184521 99199744 - Pam protein_coding retained_intron MGP_C3HHeJ_T0021311.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99196394 99199254 - Pam protein_coding retained_intron MGP_C3HHeJ_T0021312.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99211787 99223327 - Pam protein_coding retained_intron MGP_C3HHeJ_T0021313.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99213496 99247054 - MGP_C3HHeJ_P0021313 Pam protein_coding protein_coding MGP_C3HHeJ_T0021314.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99285413 99328000 - Pam protein_coding retained_intron MGP_C3HHeJ_T0021315.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99308425 99328176 - Pam protein_coding processed_transcript MGP_C3HHeJ_T0021316.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99406831 99410725 - Pam protein_coding retained_intron MGP_C3HHeJ_T0021317.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99410814 99448958 - Pam protein_coding processed_transcript MGP_C3HHeJ_T0000338.1 MGP_C3HHeJ_G0000288.1 mouse_genomes_project 1 6307321 6308371 - TEC TEC MGP_C3HHeJ_T0101554.1 MGP_C3HHeJ_G0039520.1 mouse_genomes_project 1 65356218 65356386 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012113.1 MGP_C3HHeJ_G0010217.1 mouse_genomes_project 1 121813008 121813718 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021596.1 MGP_C3HHeJ_G0016192.1 mouse_genomes_project 1 130050199 130075407 - MGP_C3HHeJ_P0021596 Map3k19 protein_coding protein_coding MGP_C3HHeJ_T0021597.1 MGP_C3HHeJ_G0016192.1 mouse_genomes_project 1 130050208 130075407 - MGP_C3HHeJ_P0021597 Map3k19 protein_coding protein_coding MGP_C3HHeJ_T0021598.1 MGP_C3HHeJ_G0016192.1 mouse_genomes_project 1 130050208 130075407 - MGP_C3HHeJ_P0021598 Map3k19 protein_coding protein_coding MGP_C3HHeJ_T0021599.1 MGP_C3HHeJ_G0016192.1 mouse_genomes_project 1 130050217 130075407 - MGP_C3HHeJ_P0021599 Map3k19 protein_coding protein_coding MGP_C3HHeJ_T0021600.1 MGP_C3HHeJ_G0016192.1 mouse_genomes_project 1 130050217 130089753 - MGP_C3HHeJ_P0021600 Map3k19 protein_coding unknown_likely_coding MGP_C3HHeJ_T0021601.1 MGP_C3HHeJ_G0016192.1 mouse_genomes_project 1 130075316 130089753 - MGP_C3HHeJ_P0021601 Map3k19 protein_coding unknown_likely_coding MGP_C3HHeJ_T0023077.1 MGP_C3HHeJ_G0016492.1 mouse_genomes_project 1 174062994 174086454 + MGP_C3HHeJ_P0023077 Sh2d1b2 protein_coding protein_coding MGP_C3HHeJ_T0023078.1 MGP_C3HHeJ_G0016492.1 mouse_genomes_project 1 174063022 174084486 + MGP_C3HHeJ_P0023078 Sh2d1b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005656.1 MGP_C3HHeJ_G0004742.1 mouse_genomes_project 1 51758768 51822645 + Gm553 lincRNA lincRNA MGP_C3HHeJ_T0012109.1 MGP_C3HHeJ_G0010213.1 mouse_genomes_project 1 120807897 120808216 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005734.1 MGP_C3HHeJ_G0004800.1 mouse_genomes_project 1 80831750 80835180 + Gm29125 lincRNA lincRNA MGP_C3HHeJ_T0021353.1 MGP_C3HHeJ_G0016136.1 mouse_genomes_project 1 107654072 107698452 + MGP_C3HHeJ_P0021353 Zcchc2 protein_coding protein_coding MGP_C3HHeJ_T0021354.1 MGP_C3HHeJ_G0016136.1 mouse_genomes_project 1 107654355 107698445 + MGP_C3HHeJ_P0021354 Zcchc2 protein_coding protein_coding MGP_C3HHeJ_T0021355.1 MGP_C3HHeJ_G0016136.1 mouse_genomes_project 1 107667784 107696826 + MGP_C3HHeJ_P0021355 Zcchc2 protein_coding protein_coding MGP_C3HHeJ_T0021356.1 MGP_C3HHeJ_G0016136.1 mouse_genomes_project 1 107667799 107691879 + MGP_C3HHeJ_P0021356 Zcchc2 protein_coding protein_coding MGP_C3HHeJ_T0021357.1 MGP_C3HHeJ_G0016136.1 mouse_genomes_project 1 107675405 107687627 + MGP_C3HHeJ_P0021357 Zcchc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000484.1 MGP_C3HHeJ_G0000431.1 mouse_genomes_project 1 70762441 70768278 - TEC TEC MGP_C3HHeJ_T0000407.1 MGP_C3HHeJ_G0000354.1 mouse_genomes_project 1 32062935 32064563 - TEC TEC MGP_C3HHeJ_T0012000.1 MGP_C3HHeJ_G0010104.1 mouse_genomes_project 1 69523613 69524364 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022286.1 MGP_C3HHeJ_G0016339.1 mouse_genomes_project 1 152935341 153031966 - MGP_C3HHeJ_P0022286 Pla2g4a protein_coding protein_coding MGP_C3HHeJ_T0022287.1 MGP_C3HHeJ_G0016339.1 mouse_genomes_project 1 152935766 153042132 - MGP_C3HHeJ_P0022287 Pla2g4a protein_coding protein_coding MGP_C3HHeJ_T0022288.1 MGP_C3HHeJ_G0016339.1 mouse_genomes_project 1 152992138 153073190 - MGP_C3HHeJ_P0022288 Pla2g4a protein_coding protein_coding MGP_C3HHeJ_T0022289.1 MGP_C3HHeJ_G0016339.1 mouse_genomes_project 1 152992178 153010724 - Pla2g4a protein_coding processed_transcript MGP_C3HHeJ_T0022290.1 MGP_C3HHeJ_G0016339.1 mouse_genomes_project 1 153028403 153073216 - Pla2g4a protein_coding retained_intron MGP_C3HHeJ_T0022291.1 MGP_C3HHeJ_G0016339.1 mouse_genomes_project 1 153041938 153073187 - Pla2g4a protein_coding processed_transcript MGP_C3HHeJ_T0097957.1 MGP_C3HHeJ_G0036169.1 mouse_genomes_project 1 77486083 77486177 + Gm25974 rRNA rRNA MGP_C3HHeJ_T0012098.1 MGP_C3HHeJ_G0010202.1 mouse_genomes_project 1 114750697 114752841 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021232.1 MGP_C3HHeJ_G0016110.1 mouse_genomes_project 1 94693849 94810202 + MGP_C3HHeJ_P0021232 Farp2 protein_coding protein_coding MGP_C3HHeJ_T0021233.1 MGP_C3HHeJ_G0016110.1 mouse_genomes_project 1 94693882 94767484 + MGP_C3HHeJ_P0021233 Farp2 protein_coding protein_coding MGP_C3HHeJ_T0021035.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92321001 92345800 + Ube2f protein_coding retained_intron MGP_C3HHeJ_T0021036.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92321008 92356060 + MGP_C3HHeJ_P0021036 Ube2f protein_coding protein_coding MGP_C3HHeJ_T0021037.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92321016 92356345 + MGP_C3HHeJ_P0021037 Ube2f protein_coding protein_coding MGP_C3HHeJ_T0021038.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92321034 92360674 + MGP_C3HHeJ_P0021038 Ube2f protein_coding protein_coding MGP_C3HHeJ_T0021039.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92321062 92356093 + MGP_C3HHeJ_P0021039 Ube2f protein_coding protein_coding MGP_C3HHeJ_T0021040.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92321263 92356247 + MGP_C3HHeJ_P0021040 Ube2f protein_coding protein_coding MGP_C3HHeJ_T0021041.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92321353 92335907 + MGP_C3HHeJ_P0021041 Ube2f protein_coding protein_coding MGP_C3HHeJ_T0021042.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92335256 92346765 + Ube2f protein_coding retained_intron MGP_C3HHeJ_T0021043.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92345269 92346873 + Ube2f protein_coding retained_intron MGP_C3HHeJ_T0021044.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92346431 92355711 + Ube2f protein_coding retained_intron MGP_C3HHeJ_T0021045.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92353969 92355336 + Ube2f protein_coding retained_intron MGP_C3HHeJ_T0011869.1 MGP_C3HHeJ_G0009973.1 mouse_genomes_project 1 32552204 32553837 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005922.1 MGP_C3HHeJ_G0004954.1 mouse_genomes_project 1 180892766 180896329 + Gm38101 lincRNA lincRNA MGP_C3HHeJ_T0022406.1 MGP_C3HHeJ_G0016360.1 mouse_genomes_project 1 156166522 156339008 + MGP_C3HHeJ_P0022406 Nmnat2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022407.1 MGP_C3HHeJ_G0016360.1 mouse_genomes_project 1 156166527 156339105 + MGP_C3HHeJ_P0022407 Nmnat2 protein_coding protein_coding MGP_C3HHeJ_T0022408.1 MGP_C3HHeJ_G0016360.1 mouse_genomes_project 1 156166570 156313124 + MGP_C3HHeJ_P0022408 Nmnat2 protein_coding protein_coding MGP_C3HHeJ_T0022409.1 MGP_C3HHeJ_G0016360.1 mouse_genomes_project 1 156166803 156296017 + Nmnat2 protein_coding processed_transcript MGP_C3HHeJ_T0022410.1 MGP_C3HHeJ_G0016360.1 mouse_genomes_project 1 156250835 156293330 + Nmnat2 protein_coding retained_intron MGP_C3HHeJ_T0022411.1 MGP_C3HHeJ_G0016360.1 mouse_genomes_project 1 156312515 156313633 + Nmnat2 protein_coding processed_transcript MGP_C3HHeJ_T0012176.1 MGP_C3HHeJ_G0010280.1 mouse_genomes_project 1 152049058 152053031 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023231.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175337157 175343991 + MGP_C3HHeJ_P0023231 Usf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023232.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175337157 175345009 + MGP_C3HHeJ_P0023232 Usf1 protein_coding protein_coding MGP_C3HHeJ_T0023233.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175337157 175342843 + MGP_C3HHeJ_P0023233 Usf1 protein_coding protein_coding MGP_C3HHeJ_T0023234.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175337170 175341599 + Usf1 protein_coding processed_transcript MGP_C3HHeJ_T0023235.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175337178 175343226 + Usf1 protein_coding retained_intron MGP_C3HHeJ_T0023236.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175337218 175341475 + Usf1 protein_coding retained_intron MGP_C3HHeJ_T0023237.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175337228 175344625 + MGP_C3HHeJ_P0023237 Usf1 protein_coding protein_coding MGP_C3HHeJ_T0023238.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175337525 175344611 + MGP_C3HHeJ_P0023238 Usf1 protein_coding protein_coding MGP_C3HHeJ_T0023239.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175343199 175343800 + Usf1 protein_coding retained_intron MGP_C3HHeJ_T0023240.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175343329 175344301 + Usf1 protein_coding retained_intron MGP_C3HHeJ_T0005822.1 MGP_C3HHeJ_G0004873.1 mouse_genomes_project 1 129087531 129091852 - 4930599A14Rik lincRNA lincRNA MGP_C3HHeJ_T0005823.1 MGP_C3HHeJ_G0004873.1 mouse_genomes_project 1 129090052 129091878 - 4930599A14Rik lincRNA lincRNA MGP_C3HHeJ_T0012229.1 MGP_C3HHeJ_G0010333.1 mouse_genomes_project 1 174814483 174814778 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011149.1 MGP_C3HHeJ_G0009282.1 mouse_genomes_project 1 46848626 46848896 - Gm23829 misc_RNA misc_RNA MGP_C3HHeJ_T0000566.1 MGP_C3HHeJ_G0000513.1 mouse_genomes_project 1 124974311 124976036 + TEC TEC MGP_C3HHeJ_T0019459.1 MGP_C3HHeJ_G0015770.1 mouse_genomes_project 1 45021880 45629225 + protein_coding processed_transcript MGP_C3HHeJ_T0021178.1 MGP_C3HHeJ_G0016100.1 mouse_genomes_project 1 94303971 94314157 + MGP_C3HHeJ_P0021178 Agxt protein_coding protein_coding MGP_C3HHeJ_T0021179.1 MGP_C3HHeJ_G0016100.1 mouse_genomes_project 1 94304299 94306743 + Agxt protein_coding retained_intron MGP_C3HHeJ_T0021180.1 MGP_C3HHeJ_G0016100.1 mouse_genomes_project 1 94308611 94314153 + Agxt protein_coding processed_transcript MGP_C3HHeJ_T0012152.1 MGP_C3HHeJ_G0010256.1 mouse_genomes_project 1 141417293 141417615 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019926.1 MGP_C3HHeJ_G0015851.1 mouse_genomes_project 1 60800327 60818303 + MGP_C3HHeJ_P0019926 Icos protein_coding protein_coding MGP_C3HHeJ_T0019927.1 MGP_C3HHeJ_G0015851.1 mouse_genomes_project 1 60800327 60822810 + MGP_C3HHeJ_P0019927 Icos protein_coding protein_coding MGP_C3HHeJ_T0098621.1 MGP_C3HHeJ_G0036815.1 mouse_genomes_project 1 64930014 64930170 - Gm24788 snRNA snRNA MGP_C3HHeJ_T0009460.1 MGP_C3HHeJ_G0007593.1 mouse_genomes_project 1 171040857 171040958 + Mir6347 miRNA miRNA MGP_C3HHeJ_T0099883.1 MGP_C3HHeJ_G0038077.1 mouse_genomes_project 1 130742700 130742834 + Gm23902 snoRNA snoRNA MGP_C3HHeJ_T0005970.1 MGP_C3HHeJ_G0004989.1 mouse_genomes_project 1 191961336 191964782 + A430105J06Rik lincRNA lincRNA MGP_C3HHeJ_T0002859.1 MGP_C3HHeJ_G0002694.1 mouse_genomes_project 1 164583555 164584438 + Gm37362 antisense antisense MGP_C3HHeJ_T0024048.1 MGP_C3HHeJ_G0016718.1 mouse_genomes_project 1 198503486 198527049 - MGP_C3HHeJ_P0024048 Diexf protein_coding protein_coding MGP_C3HHeJ_T0024049.1 MGP_C3HHeJ_G0016718.1 mouse_genomes_project 1 198504948 198529931 - MGP_C3HHeJ_P0024049 Diexf protein_coding protein_coding MGP_C3HHeJ_T0024050.1 MGP_C3HHeJ_G0016718.1 mouse_genomes_project 1 198516776 198543599 - MGP_C3HHeJ_P0024050 Diexf protein_coding protein_coding MGP_C3HHeJ_T0024051.1 MGP_C3HHeJ_G0016718.1 mouse_genomes_project 1 198516792 198543571 - MGP_C3HHeJ_P0024051 Diexf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024052.1 MGP_C3HHeJ_G0016718.1 mouse_genomes_project 1 198520127 198527752 - Diexf protein_coding retained_intron MGP_C3HHeJ_T0024053.1 MGP_C3HHeJ_G0016718.1 mouse_genomes_project 1 198532851 198534845 - Diexf protein_coding retained_intron MGP_C3HHeJ_T0024054.1 MGP_C3HHeJ_G0016718.1 mouse_genomes_project 1 198533016 198541680 - Diexf protein_coding processed_transcript MGP_C3HHeJ_T0024055.1 MGP_C3HHeJ_G0016718.1 mouse_genomes_project 1 198534415 198543534 - MGP_C3HHeJ_P0024055 Diexf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024056.1 MGP_C3HHeJ_G0016718.1 mouse_genomes_project 1 198534433 198536182 - Diexf protein_coding processed_transcript MGP_C3HHeJ_T0024086.1 MGP_C3HHeJ_G0016723.1 mouse_genomes_project 1 198640277 198663500 - MGP_C3HHeJ_P0024086 Hsd11b1 protein_coding protein_coding MGP_C3HHeJ_T0024087.1 MGP_C3HHeJ_G0016723.1 mouse_genomes_project 1 198640325 198662467 - MGP_C3HHeJ_P0024087 Hsd11b1 protein_coding protein_coding MGP_C3HHeJ_T0024088.1 MGP_C3HHeJ_G0016723.1 mouse_genomes_project 1 198640332 198687722 - MGP_C3HHeJ_P0024088 Hsd11b1 protein_coding protein_coding MGP_C3HHeJ_T0024089.1 MGP_C3HHeJ_G0016723.1 mouse_genomes_project 1 198642284 198664431 - MGP_C3HHeJ_P0024089 Hsd11b1 protein_coding protein_coding MGP_C3HHeJ_T0024090.1 MGP_C3HHeJ_G0016723.1 mouse_genomes_project 1 198649611 198661269 - MGP_C3HHeJ_P0024090 Hsd11b1 protein_coding protein_coding MGP_C3HHeJ_T0024091.1 MGP_C3HHeJ_G0016723.1 mouse_genomes_project 1 198657900 198659882 - Hsd11b1 protein_coding retained_intron MGP_C3HHeJ_T0024092.1 MGP_C3HHeJ_G0016723.1 mouse_genomes_project 1 198659128 198662293 - Hsd11b1 protein_coding processed_transcript MGP_C3HHeJ_T0011918.1 MGP_C3HHeJ_G0010022.1 mouse_genomes_project 1 47621857 47622070 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022127.1 MGP_C3HHeJ_G0016306.1 mouse_genomes_project 1 138787288 138814688 - MGP_C3HHeJ_P0022127 Mroh3 protein_coding protein_coding MGP_C3HHeJ_T0022128.1 MGP_C3HHeJ_G0016306.1 mouse_genomes_project 1 138787466 138797422 - MGP_C3HHeJ_P0022128 Mroh3 protein_coding protein_coding MGP_C3HHeJ_T0022129.1 MGP_C3HHeJ_G0016306.1 mouse_genomes_project 1 138787466 138818967 - MGP_C3HHeJ_P0022129 Mroh3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0022130.1 MGP_C3HHeJ_G0016306.1 mouse_genomes_project 1 138787476 138789644 - Mroh3 protein_coding retained_intron MGP_C3HHeJ_T0022131.1 MGP_C3HHeJ_G0016306.1 mouse_genomes_project 1 138797494 138806298 - MGP_C3HHeJ_P0022131 Mroh3 protein_coding protein_coding MGP_C3HHeJ_T0002858.1 MGP_C3HHeJ_G0002693.1 mouse_genomes_project 1 163780450 163972596 + Gm36975 antisense antisense MGP_C3HHeJ_T0021631.1 MGP_C3HHeJ_G0016196.1 mouse_genomes_project 1 130485972 130505494 + MGP_C3HHeJ_P0021631 Ubxn4 protein_coding protein_coding MGP_C3HHeJ_T0021632.1 MGP_C3HHeJ_G0016196.1 mouse_genomes_project 1 130486170 130525735 + MGP_C3HHeJ_P0021632 Ubxn4 protein_coding protein_coding MGP_C3HHeJ_T0021633.1 MGP_C3HHeJ_G0016196.1 mouse_genomes_project 1 130505462 130519523 + Ubxn4 protein_coding retained_intron MGP_C3HHeJ_T0021634.1 MGP_C3HHeJ_G0016196.1 mouse_genomes_project 1 130520983 130523377 + Ubxn4 protein_coding retained_intron MGP_C3HHeJ_T0012108.1 MGP_C3HHeJ_G0010212.1 mouse_genomes_project 1 120645482 120645796 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019131.1 MGP_C3HHeJ_G0015704.1 mouse_genomes_project 1 35089792 35241856 - MGP_C3HHeJ_P0019131 Tmem131 protein_coding protein_coding MGP_C3HHeJ_T0019132.1 MGP_C3HHeJ_G0015704.1 mouse_genomes_project 1 35089795 35242151 - MGP_C3HHeJ_P0019132 Tmem131 protein_coding protein_coding MGP_C3HHeJ_T0019133.1 MGP_C3HHeJ_G0015704.1 mouse_genomes_project 1 35098602 35114296 - Tmem131 protein_coding retained_intron MGP_C3HHeJ_T0019134.1 MGP_C3HHeJ_G0015704.1 mouse_genomes_project 1 35105776 35107768 - Tmem131 protein_coding retained_intron MGP_C3HHeJ_T0019135.1 MGP_C3HHeJ_G0015704.1 mouse_genomes_project 1 35111363 35116475 - MGP_C3HHeJ_P0019135 Tmem131 protein_coding protein_coding MGP_C3HHeJ_T0019136.1 MGP_C3HHeJ_G0015704.1 mouse_genomes_project 1 35113131 35116866 - MGP_C3HHeJ_P0019136 Tmem131 protein_coding protein_coding MGP_C3HHeJ_T0019137.1 MGP_C3HHeJ_G0015704.1 mouse_genomes_project 1 35116373 35122342 - MGP_C3HHeJ_P0019137 Tmem131 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019138.1 MGP_C3HHeJ_G0015704.1 mouse_genomes_project 1 35140232 35245966 - MGP_C3HHeJ_P0019138 Tmem131 protein_coding protein_coding MGP_C3HHeJ_T0011753.1 MGP_C3HHeJ_G0009857.1 mouse_genomes_project 1 1668879 1669815 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023518.1 MGP_C3HHeJ_G0016610.1 mouse_genomes_project 1 182093306 182097187 + MGP_C3HHeJ_P0023518 Zbtb18 protein_coding protein_coding MGP_C3HHeJ_T0023519.1 MGP_C3HHeJ_G0016610.1 mouse_genomes_project 1 182093314 182097236 + MGP_C3HHeJ_P0023519 Zbtb18 protein_coding protein_coding MGP_C3HHeJ_T0023520.1 MGP_C3HHeJ_G0016610.1 mouse_genomes_project 1 182094739 182097879 + MGP_C3HHeJ_P0023520 Zbtb18 protein_coding protein_coding MGP_C3HHeJ_T0023521.1 MGP_C3HHeJ_G0016610.1 mouse_genomes_project 1 182094751 182097677 + MGP_C3HHeJ_P0023521 Zbtb18 protein_coding protein_coding MGP_C3HHeJ_T0023522.1 MGP_C3HHeJ_G0016610.1 mouse_genomes_project 1 182094827 182097609 + MGP_C3HHeJ_P0023522 Zbtb18 protein_coding protein_coding MGP_C3HHeJ_T0023523.1 MGP_C3HHeJ_G0016610.1 mouse_genomes_project 1 182095721 182096596 + Zbtb18 protein_coding processed_transcript MGP_C3HHeJ_T0023524.1 MGP_C3HHeJ_G0016610.1 mouse_genomes_project 1 182095911 182103815 + MGP_C3HHeJ_P0023524 Zbtb18 protein_coding protein_coding MGP_C3HHeJ_T0000717.1 MGP_C3HHeJ_G0000662.1 mouse_genomes_project 1 180788193 180790629 + TEC TEC MGP_C3HHeJ_T0101600.1 MGP_C3HHeJ_G0039566.1 mouse_genomes_project 1 178722678 178723621 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016763.1 MGP_C3HHeJ_G0014855.1 mouse_genomes_project 1 42754677 42774992 - Gm29247 processed_transcript processed_transcript MGP_C3HHeJ_T0016764.1 MGP_C3HHeJ_G0014855.1 mouse_genomes_project 1 42754778 42775736 - Gm29247 processed_transcript processed_transcript MGP_C3HHeJ_T0005916.1 MGP_C3HHeJ_G0004948.1 mouse_genomes_project 1 174007052 174008197 + Gm37748 lincRNA lincRNA MGP_C3HHeJ_T0021058.1 MGP_C3HHeJ_G0016072.1 mouse_genomes_project 1 92426731 92438075 + MGP_C3HHeJ_P0021058 Klhl30 protein_coding protein_coding MGP_C3HHeJ_T0005715.1 MGP_C3HHeJ_G0004785.1 mouse_genomes_project 1 73811459 73818889 + Gm29186 lincRNA lincRNA MGP_C3HHeJ_T0002812.1 MGP_C3HHeJ_G0002657.1 mouse_genomes_project 1 132838811 132934597 + antisense antisense MGP_C3HHeJ_T0005862.1 MGP_C3HHeJ_G0004906.1 mouse_genomes_project 1 153278591 153283960 - Ptgs2os2 lincRNA lincRNA MGP_C3HHeJ_T0011915.1 MGP_C3HHeJ_G0010019.1 mouse_genomes_project 1 46577367 46578698 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011750.1 MGP_C3HHeJ_G0009854.1 mouse_genomes_project 1 1315272 1320048 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101597.1 MGP_C3HHeJ_G0039563.1 mouse_genomes_project 1 178554033 178563599 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0021275.1 MGP_C3HHeJ_G0016118.1 mouse_genomes_project 1 95253715 95258680 + MGP_C3HHeJ_P0021275 Neu4 protein_coding protein_coding MGP_C3HHeJ_T0021276.1 MGP_C3HHeJ_G0016118.1 mouse_genomes_project 1 95253757 95261597 + MGP_C3HHeJ_P0021276 Neu4 protein_coding protein_coding MGP_C3HHeJ_T0002838.1 MGP_C3HHeJ_G0002677.1 mouse_genomes_project 1 143460269 143549512 - 4930590L20Rik antisense antisense MGP_C3HHeJ_T0000651.1 MGP_C3HHeJ_G0000596.1 mouse_genomes_project 1 154676336 154679364 - TEC TEC MGP_C3HHeJ_T0022755.1 MGP_C3HHeJ_G0016418.1 mouse_genomes_project 1 164971096 164994042 + MGP_C3HHeJ_P0022755 Tnfsf4 protein_coding protein_coding MGP_C3HHeJ_T0021338.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107311482 107336590 + 2310035C23Rik protein_coding processed_transcript MGP_C3HHeJ_T0021339.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107311482 107405932 + MGP_C3HHeJ_P0021339 2310035C23Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021340.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107311504 107405935 + MGP_C3HHeJ_P0021340 2310035C23Rik protein_coding protein_coding MGP_C3HHeJ_T0021341.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107311534 107407051 + MGP_C3HHeJ_P0021341 2310035C23Rik protein_coding protein_coding MGP_C3HHeJ_T0021342.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107311544 107405571 + MGP_C3HHeJ_P0021342 2310035C23Rik protein_coding protein_coding MGP_C3HHeJ_T0021343.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107311558 107312772 + 2310035C23Rik protein_coding processed_transcript MGP_C3HHeJ_T0021344.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107312062 107390375 + 2310035C23Rik protein_coding retained_intron MGP_C3HHeJ_T0021345.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107346119 107407046 + MGP_C3HHeJ_P0021345 2310035C23Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021346.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107354660 107367328 + 2310035C23Rik protein_coding retained_intron MGP_C3HHeJ_T0021347.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107381949 107386436 + 2310035C23Rik protein_coding retained_intron MGP_C3HHeJ_T0021348.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107392085 107405385 + 2310035C23Rik protein_coding retained_intron MGP_C3HHeJ_T0021349.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107392853 107402853 + 2310035C23Rik protein_coding retained_intron MGP_C3HHeJ_T0097971.1 MGP_C3HHeJ_G0036183.1 mouse_genomes_project 1 165126272 165126390 - Gm25488 rRNA rRNA MGP_C3HHeJ_T0005917.1 MGP_C3HHeJ_G0004949.1 mouse_genomes_project 1 174007254 174010412 - Gm37502 lincRNA lincRNA MGP_C3HHeJ_T0011155.1 MGP_C3HHeJ_G0009288.1 mouse_genomes_project 1 73684637 73684791 + Gm27315 misc_RNA misc_RNA MGP_C3HHeJ_T0022630.1 MGP_C3HHeJ_G0016400.1 mouse_genomes_project 1 161665573 161774779 - MGP_C3HHeJ_P0022630 Brinp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022631.1 MGP_C3HHeJ_G0016400.1 mouse_genomes_project 1 161665573 161774876 - MGP_C3HHeJ_P0022631 Brinp2 protein_coding protein_coding MGP_C3HHeJ_T0022632.1 MGP_C3HHeJ_G0016400.1 mouse_genomes_project 1 161717532 161718292 - Brinp2 protein_coding processed_transcript MGP_C3HHeJ_T0022633.1 MGP_C3HHeJ_G0016400.1 mouse_genomes_project 1 161770857 161774845 - Brinp2 protein_coding retained_intron MGP_C3HHeJ_T0021500.1 MGP_C3HHeJ_G0016171.1 mouse_genomes_project 1 122101316 122108939 - MGP_C3HHeJ_P0021500 Tmem37 protein_coding protein_coding MGP_C3HHeJ_T0005987.1 MGP_C3HHeJ_G0005003.1 mouse_genomes_project 1 198455013 198456442 - Gm31406 lincRNA lincRNA MGP_C3HHeJ_T0098606.1 MGP_C3HHeJ_G0036800.1 mouse_genomes_project 1 30671447 30671510 - Gm24732 snRNA snRNA MGP_C3HHeJ_T0011799.1 MGP_C3HHeJ_G0009903.1 mouse_genomes_project 1 9857994 9858681 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018592.1 MGP_C3HHeJ_G0015597.1 mouse_genomes_project 1 6714435 6740015 + MGP_C3HHeJ_P0018592 3110035E14Rik protein_coding protein_coding MGP_C3HHeJ_T0011946.1 MGP_C3HHeJ_G0010050.1 mouse_genomes_project 1 54837578 54837974 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016860.1 MGP_C3HHeJ_G0014885.1 mouse_genomes_project 1 175956727 175961978 - A630035G10Rik processed_transcript lincRNA MGP_C3HHeJ_T0016861.1 MGP_C3HHeJ_G0014885.1 mouse_genomes_project 1 175960164 175962021 - A630035G10Rik processed_transcript retained_intron MGP_C3HHeJ_T0019025.1 MGP_C3HHeJ_G0015686.1 mouse_genomes_project 1 33031633 33062522 - MGP_C3HHeJ_P0019025 Fam168b protein_coding protein_coding MGP_C3HHeJ_T0019026.1 MGP_C3HHeJ_G0015686.1 mouse_genomes_project 1 33031640 33062537 - MGP_C3HHeJ_P0019026 Fam168b protein_coding protein_coding MGP_C3HHeJ_T0019027.1 MGP_C3HHeJ_G0015686.1 mouse_genomes_project 1 33035639 33062436 - MGP_C3HHeJ_P0019027 Fam168b protein_coding protein_coding MGP_C3HHeJ_T0019028.1 MGP_C3HHeJ_G0015686.1 mouse_genomes_project 1 33035756 33062457 - MGP_C3HHeJ_P0019028 Fam168b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019029.1 MGP_C3HHeJ_G0015686.1 mouse_genomes_project 1 33036413 33062506 - MGP_C3HHeJ_P0019029 Fam168b protein_coding protein_coding MGP_C3HHeJ_T0019030.1 MGP_C3HHeJ_G0015686.1 mouse_genomes_project 1 33038016 33062485 - Fam168b protein_coding processed_transcript MGP_C3HHeJ_T0019031.1 MGP_C3HHeJ_G0015686.1 mouse_genomes_project 1 33038103 33062476 - MGP_C3HHeJ_P0019031 Fam168b protein_coding protein_coding MGP_C3HHeJ_T0019032.1 MGP_C3HHeJ_G0015686.1 mouse_genomes_project 1 33047095 33062537 - Fam168b protein_coding retained_intron MGP_C3HHeJ_T0023107.1 MGP_C3HHeJ_G0016502.1 mouse_genomes_project 1 174828447 174845058 - MGP_C3HHeJ_P0023107 Fcgr2b protein_coding protein_coding MGP_C3HHeJ_T0023108.1 MGP_C3HHeJ_G0016502.1 mouse_genomes_project 1 174830120 174845058 - MGP_C3HHeJ_P0023108 Fcgr2b protein_coding protein_coding MGP_C3HHeJ_T0023109.1 MGP_C3HHeJ_G0016502.1 mouse_genomes_project 1 174830294 174831191 - Fcgr2b protein_coding processed_transcript MGP_C3HHeJ_T0023110.1 MGP_C3HHeJ_G0016502.1 mouse_genomes_project 1 174830329 174845494 - MGP_C3HHeJ_P0023110 Fcgr2b protein_coding protein_coding MGP_C3HHeJ_T0023111.1 MGP_C3HHeJ_G0016502.1 mouse_genomes_project 1 174830553 174845058 - MGP_C3HHeJ_P0023111 Fcgr2b protein_coding protein_coding MGP_C3HHeJ_T0023112.1 MGP_C3HHeJ_G0016502.1 mouse_genomes_project 1 174833868 174845058 - Fcgr2b protein_coding retained_intron MGP_C3HHeJ_T0023113.1 MGP_C3HHeJ_G0016502.1 mouse_genomes_project 1 174838794 174845058 - Fcgr2b protein_coding retained_intron MGP_C3HHeJ_T0012276.1 MGP_C3HHeJ_G0010380.1 mouse_genomes_project 1 200317862 200318220 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005611.1 MGP_C3HHeJ_G0004715.1 mouse_genomes_project 1 34590416 34591132 + 4930403P22Rik lincRNA lincRNA MGP_C3HHeJ_T0022269.1 MGP_C3HHeJ_G0016335.1 mouse_genomes_project 1 147171410 147178356 - MGP_C3HHeJ_P0022269 Rgs1 protein_coding protein_coding MGP_C3HHeJ_T0022270.1 MGP_C3HHeJ_G0016335.1 mouse_genomes_project 1 147172327 147178170 - Rgs1 protein_coding retained_intron MGP_C3HHeJ_T0022271.1 MGP_C3HHeJ_G0016335.1 mouse_genomes_project 1 147173086 147178174 - MGP_C3HHeJ_P0022271 Rgs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022272.1 MGP_C3HHeJ_G0016335.1 mouse_genomes_project 1 147173709 147178174 - MGP_C3HHeJ_P0022272 Rgs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022273.1 MGP_C3HHeJ_G0016335.1 mouse_genomes_project 1 147173786 147178142 - MGP_C3HHeJ_P0022273 Rgs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022274.1 MGP_C3HHeJ_G0016335.1 mouse_genomes_project 1 147173786 147178172 - MGP_C3HHeJ_P0022274 Rgs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022275.1 MGP_C3HHeJ_G0016335.1 mouse_genomes_project 1 147174576 147178173 - MGP_C3HHeJ_P0022275 Rgs1 protein_coding protein_coding MGP_C3HHeJ_T0022276.1 MGP_C3HHeJ_G0016335.1 mouse_genomes_project 1 147176906 147178172 - Rgs1 protein_coding retained_intron MGP_C3HHeJ_T0022277.1 MGP_C3HHeJ_G0016335.1 mouse_genomes_project 1 147176909 147178175 - Rgs1 protein_coding retained_intron MGP_C3HHeJ_T0101335.1 MGP_C3HHeJ_G0039414.1 mouse_genomes_project 1 98262958 98349551 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101336.1 MGP_C3HHeJ_G0039414.1 mouse_genomes_project 1 98280964 98349211 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0005982.1 MGP_C3HHeJ_G0004999.1 mouse_genomes_project 1 196655589 196679285 + Gm37168 lincRNA lincRNA MGP_C3HHeJ_T0005864.1 MGP_C3HHeJ_G0004908.1 mouse_genomes_project 1 154297017 154301341 + C730036E19Rik lincRNA lincRNA MGP_C3HHeJ_T0011941.1 MGP_C3HHeJ_G0010045.1 mouse_genomes_project 1 54552835 54553641 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002787.1 MGP_C3HHeJ_G0002639.1 mouse_genomes_project 1 92886561 92891749 - Gm29100 antisense antisense MGP_C3HHeJ_T0000350.1 MGP_C3HHeJ_G0000300.1 mouse_genomes_project 1 10527392 10528088 - TEC TEC MGP_C3HHeJ_T0000395.1 MGP_C3HHeJ_G0000343.1 mouse_genomes_project 1 28813053 28815932 - TEC TEC MGP_C3HHeJ_T0016800.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137672545 137673483 - Ptprv processed_transcript retained_intron MGP_C3HHeJ_T0016801.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137672546 137696403 - Ptprv processed_transcript processed_transcript MGP_C3HHeJ_T0016802.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137672548 137673355 - Ptprv processed_transcript processed_transcript MGP_C3HHeJ_T0016803.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137672675 137673636 - Ptprv processed_transcript processed_transcript MGP_C3HHeJ_T0016804.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137674059 137674508 - Ptprv processed_transcript retained_intron MGP_C3HHeJ_T0016805.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137674318 137675584 - Ptprv processed_transcript retained_intron MGP_C3HHeJ_T0016806.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137675212 137676138 - Ptprv processed_transcript processed_transcript MGP_C3HHeJ_T0016807.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137690244 137696377 - Ptprv processed_transcript processed_transcript MGP_C3HHeJ_T0016808.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137690262 137692168 - Ptprv processed_transcript retained_intron MGP_C3HHeJ_T0016809.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137693369 137694973 - Ptprv processed_transcript processed_transcript MGP_C3HHeJ_T0016810.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137693480 137696352 - Ptprv processed_transcript processed_transcript MGP_C3HHeJ_T0020190.1 MGP_C3HHeJ_G0015903.1 mouse_genomes_project 1 72881067 72939481 - MGP_C3HHeJ_P0020190 Ankar protein_coding protein_coding MGP_C3HHeJ_T0002735.1 MGP_C3HHeJ_G0002600.1 mouse_genomes_project 1 43444529 43449784 - 4930521E06Rik antisense antisense MGP_C3HHeJ_T0021079.1 MGP_C3HHeJ_G0016076.1 mouse_genomes_project 1 92493091 92535876 - MGP_C3HHeJ_P0021079 Per2 protein_coding protein_coding MGP_C3HHeJ_T0021080.1 MGP_C3HHeJ_G0016076.1 mouse_genomes_project 1 92524286 92526430 - Per2 protein_coding processed_transcript MGP_C3HHeJ_T0023430.1 MGP_C3HHeJ_G0016588.1 mouse_genomes_project 1 178739200 178740246 + MGP_C3HHeJ_P0023430 Olfr420 protein_coding protein_coding MGP_C3HHeJ_T0020639.1 MGP_C3HHeJ_G0015981.1 mouse_genomes_project 1 82753959 82814460 - MGP_C3HHeJ_P0020639 Irs1 protein_coding protein_coding MGP_C3HHeJ_T0020222.1 MGP_C3HHeJ_G0015911.1 mouse_genomes_project 1 74491673 74494516 - MGP_C3HHeJ_P0020222 Cxcr1 protein_coding protein_coding MGP_C3HHeJ_T0020223.1 MGP_C3HHeJ_G0015911.1 mouse_genomes_project 1 74491673 74493120 - MGP_C3HHeJ_P0020223 Cxcr1 protein_coding protein_coding MGP_C3HHeJ_T0009406.1 MGP_C3HHeJ_G0007539.1 mouse_genomes_project 1 63021433 63021520 + Gm24557 miRNA miRNA MGP_C3HHeJ_T0101326.1 MGP_C3HHeJ_G0039410.1 mouse_genomes_project 1 15450355 15475806 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101327.1 MGP_C3HHeJ_G0039410.1 mouse_genomes_project 1 15465248 15475285 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0002800.1 MGP_C3HHeJ_G0002650.1 mouse_genomes_project 1 106979402 106986241 + Gm17634 antisense antisense MGP_C3HHeJ_T0002801.1 MGP_C3HHeJ_G0002650.1 mouse_genomes_project 1 106980156 106986383 + Gm17634 antisense antisense MGP_C3HHeJ_T0002802.1 MGP_C3HHeJ_G0002650.1 mouse_genomes_project 1 106980542 106980906 + Gm17634 antisense antisense MGP_C3HHeJ_T0011165.1 MGP_C3HHeJ_G0009298.1 mouse_genomes_project 1 181426907 181427172 + Gm25288 misc_RNA misc_RNA MGP_C3HHeJ_T0022984.1 MGP_C3HHeJ_G0016467.1 mouse_genomes_project 1 169852216 169891451 + MGP_C3HHeJ_P0022984 Gpa33 protein_coding protein_coding MGP_C3HHeJ_T0022985.1 MGP_C3HHeJ_G0016467.1 mouse_genomes_project 1 169852318 169882469 + MGP_C3HHeJ_P0022985 Gpa33 protein_coding protein_coding MGP_C3HHeJ_T0022986.1 MGP_C3HHeJ_G0016467.1 mouse_genomes_project 1 169852395 169879076 + Gpa33 protein_coding processed_transcript MGP_C3HHeJ_T0022987.1 MGP_C3HHeJ_G0016467.1 mouse_genomes_project 1 169852445 169891450 + MGP_C3HHeJ_P0022987 Gpa33 protein_coding protein_coding MGP_C3HHeJ_T0011838.1 MGP_C3HHeJ_G0009942.1 mouse_genomes_project 1 23692013 23692569 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018508.1 MGP_C3HHeJ_G0015583.1 mouse_genomes_project 1 1881326 1923572 + MGP_C3HHeJ_P0018508 Lypla1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018509.1 MGP_C3HHeJ_G0015583.1 mouse_genomes_project 1 1881361 1921788 + MGP_C3HHeJ_P0018509 Lypla1 protein_coding protein_coding MGP_C3HHeJ_T0018510.1 MGP_C3HHeJ_G0015583.1 mouse_genomes_project 1 1881368 1916309 + MGP_C3HHeJ_P0018510 Lypla1 protein_coding protein_coding MGP_C3HHeJ_T0018512.1 MGP_C3HHeJ_G0015583.1 mouse_genomes_project 1 1881434 1920224 + MGP_C3HHeJ_P0018512 Lypla1 protein_coding protein_coding MGP_C3HHeJ_T0018513.1 MGP_C3HHeJ_G0015583.1 mouse_genomes_project 1 1881436 1915992 + MGP_C3HHeJ_P0018513 Lypla1 protein_coding protein_coding MGP_C3HHeJ_T0018514.1 MGP_C3HHeJ_G0015583.1 mouse_genomes_project 1 1881449 1920402 + MGP_C3HHeJ_P0018514 Lypla1 protein_coding protein_coding MGP_C3HHeJ_T0018515.1 MGP_C3HHeJ_G0015583.1 mouse_genomes_project 1 1881479 1921788 + MGP_C3HHeJ_P0018515 Lypla1 protein_coding protein_coding MGP_C3HHeJ_T0018516.1 MGP_C3HHeJ_G0015583.1 mouse_genomes_project 1 1911924 1917847 + Lypla1 protein_coding retained_intron MGP_C3HHeJ_T0000363.1 MGP_C3HHeJ_G0000313.1 mouse_genomes_project 1 14318263 14319090 + TEC TEC MGP_C3HHeJ_T0005744.1 MGP_C3HHeJ_G0004808.1 mouse_genomes_project 1 87947101 87951211 - Gm29374 lincRNA lincRNA MGP_C3HHeJ_T0000482.1 MGP_C3HHeJ_G0000429.1 mouse_genomes_project 1 69930983 69932869 + TEC TEC MGP_C3HHeJ_T0009463.1 MGP_C3HHeJ_G0007596.1 mouse_genomes_project 1 172827129 172827249 - Mir6354 miRNA miRNA MGP_C3HHeJ_T0002830.1 MGP_C3HHeJ_G0002669.1 mouse_genomes_project 1 137673007 137677210 + Gm10535 antisense antisense MGP_C3HHeJ_T0023023.1 MGP_C3HHeJ_G0016477.1 mouse_genomes_project 1 171059561 171083985 + MGP_C3HHeJ_P0023023 Tmco1 protein_coding protein_coding MGP_C3HHeJ_T0023024.1 MGP_C3HHeJ_G0016477.1 mouse_genomes_project 1 171059853 171083985 + MGP_C3HHeJ_P0023024 Tmco1 protein_coding protein_coding MGP_C3HHeJ_T0023025.1 MGP_C3HHeJ_G0016477.1 mouse_genomes_project 1 171059919 171087166 + MGP_C3HHeJ_P0023025 Tmco1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023026.1 MGP_C3HHeJ_G0016477.1 mouse_genomes_project 1 171066710 171083800 + MGP_C3HHeJ_P0023026 Tmco1 protein_coding protein_coding MGP_C3HHeJ_T0099913.1 MGP_C3HHeJ_G0038107.1 mouse_genomes_project 1 177266362 177266485 - Gm26077 snoRNA snoRNA MGP_C3HHeJ_T0012115.1 MGP_C3HHeJ_G0010219.1 mouse_genomes_project 1 121898369 121898599 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000681.1 MGP_C3HHeJ_G0000626.1 mouse_genomes_project 1 164124026 164125284 - TEC TEC MGP_C3HHeJ_T0000434.1 MGP_C3HHeJ_G0000381.1 mouse_genomes_project 1 45978569 45982425 - TEC TEC MGP_C3HHeJ_T0020607.1 MGP_C3HHeJ_G0015975.1 mouse_genomes_project 1 80213275 80218705 + MGP_C3HHeJ_P0020607 Mrpl44 protein_coding protein_coding MGP_C3HHeJ_T0020608.1 MGP_C3HHeJ_G0015975.1 mouse_genomes_project 1 80213373 80215808 + Mrpl44 protein_coding retained_intron MGP_C3HHeJ_T0101596.1 MGP_C3HHeJ_G0039562.1 mouse_genomes_project 1 178552538 178554178 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012273.1 MGP_C3HHeJ_G0010377.1 mouse_genomes_project 1 198468450 198468565 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098683.1 MGP_C3HHeJ_G0036877.1 mouse_genomes_project 1 197184882 197184986 - Gm22446 snRNA snRNA MGP_C3HHeJ_T0002702.1 MGP_C3HHeJ_G0002573.1 mouse_genomes_project 1 16533148 16577566 - Gm15825 antisense antisense MGP_C3HHeJ_T0005695.1 MGP_C3HHeJ_G0004774.1 mouse_genomes_project 1 69642459 69645891 - Gm29113 lincRNA lincRNA MGP_C3HHeJ_T0005834.1 MGP_C3HHeJ_G0004884.1 mouse_genomes_project 1 136958924 136962877 + Platr1 lincRNA lincRNA MGP_C3HHeJ_T0023299.1 MGP_C3HHeJ_G0016542.1 mouse_genomes_project 1 176426723 176435210 + MGP_C3HHeJ_P0023299 Pex19 protein_coding protein_coding MGP_C3HHeJ_T0023300.1 MGP_C3HHeJ_G0016542.1 mouse_genomes_project 1 176426724 176430966 + Pex19 protein_coding retained_intron MGP_C3HHeJ_T0023301.1 MGP_C3HHeJ_G0016542.1 mouse_genomes_project 1 176426730 176437470 + MGP_C3HHeJ_P0023301 Pex19 protein_coding protein_coding MGP_C3HHeJ_T0023302.1 MGP_C3HHeJ_G0016542.1 mouse_genomes_project 1 176426741 176430132 + Pex19 protein_coding retained_intron MGP_C3HHeJ_T0023303.1 MGP_C3HHeJ_G0016542.1 mouse_genomes_project 1 176426741 176428859 + Pex19 protein_coding retained_intron MGP_C3HHeJ_T0023304.1 MGP_C3HHeJ_G0016542.1 mouse_genomes_project 1 176433822 176434627 + Pex19 protein_coding retained_intron MGP_C3HHeJ_T0012136.1 MGP_C3HHeJ_G0010240.1 mouse_genomes_project 1 130764302 130764610 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011795.1 MGP_C3HHeJ_G0009899.1 mouse_genomes_project 1 8362953 8363562 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018791.1 MGP_C3HHeJ_G0015630.1 mouse_genomes_project 1 14085220 14090377 + Ly96 protein_coding retained_intron MGP_C3HHeJ_T0018792.1 MGP_C3HHeJ_G0015630.1 mouse_genomes_project 1 14085604 14108990 + MGP_C3HHeJ_P0018792 Ly96 protein_coding protein_coding MGP_C3HHeJ_T0018793.1 MGP_C3HHeJ_G0015630.1 mouse_genomes_project 1 14085679 14108916 + MGP_C3HHeJ_P0018793 Ly96 protein_coding protein_coding MGP_C3HHeJ_T0022453.1 MGP_C3HHeJ_G0016369.1 mouse_genomes_project 1 157045502 157079721 - MGP_C3HHeJ_P0022453 Rgsl1 protein_coding protein_coding MGP_C3HHeJ_T0022454.1 MGP_C3HHeJ_G0016369.1 mouse_genomes_project 1 157045504 157119818 - MGP_C3HHeJ_P0022454 Rgsl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0022455.1 MGP_C3HHeJ_G0016369.1 mouse_genomes_project 1 157045507 157119846 - MGP_C3HHeJ_P0022455 Rgsl1 protein_coding protein_coding MGP_C3HHeJ_T0022456.1 MGP_C3HHeJ_G0016369.1 mouse_genomes_project 1 157045513 157098721 - MGP_C3HHeJ_P0022456 Rgsl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022457.1 MGP_C3HHeJ_G0016369.1 mouse_genomes_project 1 157047809 157056877 - Rgsl1 protein_coding processed_transcript MGP_C3HHeJ_T0022458.1 MGP_C3HHeJ_G0016369.1 mouse_genomes_project 1 157051263 157119838 - MGP_C3HHeJ_P0022458 Rgsl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022459.1 MGP_C3HHeJ_G0016369.1 mouse_genomes_project 1 157058727 157094044 - Rgsl1 protein_coding retained_intron MGP_C3HHeJ_T0022460.1 MGP_C3HHeJ_G0016369.1 mouse_genomes_project 1 157070721 157085395 - Rgsl1 protein_coding processed_transcript MGP_C3HHeJ_T0020354.1 MGP_C3HHeJ_G0015937.1 mouse_genomes_project 1 75288343 75294713 - MGP_C3HHeJ_P0020354 Ihh protein_coding protein_coding MGP_C3HHeJ_T0020355.1 MGP_C3HHeJ_G0015937.1 mouse_genomes_project 1 75290756 75294483 - Ihh protein_coding retained_intron MGP_C3HHeJ_T0012055.1 MGP_C3HHeJ_G0010159.1 mouse_genomes_project 1 98353793 98354757 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000524.1 MGP_C3HHeJ_G0000471.1 mouse_genomes_project 1 87688081 87690715 + TEC TEC MGP_C3HHeJ_T0099916.1 MGP_C3HHeJ_G0038110.1 mouse_genomes_project 1 193868852 193868983 - Gm25095 snoRNA snoRNA MGP_C3HHeJ_T0000772.1 MGP_C3HHeJ_G0000714.1 mouse_genomes_project 1 198927168 198929314 + TEC TEC MGP_C3HHeJ_T0002879.1 MGP_C3HHeJ_G0002709.1 mouse_genomes_project 1 171792012 171914017 + Gm20711 antisense antisense MGP_C3HHeJ_T0018848.1 MGP_C3HHeJ_G0015650.1 mouse_genomes_project 1 18868584 18870952 + MGP_C3HHeJ_P0018848 protein_coding protein_coding MGP_C3HHeJ_T0019887.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 59993098 60158913 + MGP_C3HHeJ_P0019887 Nbeal1 protein_coding protein_coding MGP_C3HHeJ_T0019888.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 59993311 59999200 + Nbeal1 protein_coding retained_intron MGP_C3HHeJ_T0019889.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 60037974 60051292 + MGP_C3HHeJ_P0019889 Nbeal1 protein_coding protein_coding MGP_C3HHeJ_T0019890.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 60042994 60045671 + Nbeal1 protein_coding retained_intron MGP_C3HHeJ_T0019891.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 60051194 60105272 + Nbeal1 protein_coding retained_intron MGP_C3HHeJ_T0019892.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 60083540 60146911 + MGP_C3HHeJ_P0019892 Nbeal1 protein_coding protein_coding MGP_C3HHeJ_T0019893.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 60083548 60152082 + MGP_C3HHeJ_P0019893 Nbeal1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019894.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 60089373 60092591 + Nbeal1 protein_coding retained_intron MGP_C3HHeJ_T0019895.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 60102003 60115533 + MGP_C3HHeJ_P0019895 Nbeal1 protein_coding protein_coding MGP_C3HHeJ_T0019896.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 60107168 60109430 + Nbeal1 protein_coding retained_intron MGP_C3HHeJ_T0002842.1 MGP_C3HHeJ_G0002680.1 mouse_genomes_project 1 153448988 153469376 - 2310030A07Rik antisense antisense MGP_C3HHeJ_T0000397.1 MGP_C3HHeJ_G0000345.1 mouse_genomes_project 1 30571337 30573146 + TEC TEC MGP_C3HHeJ_T0005915.1 MGP_C3HHeJ_G0004947.1 mouse_genomes_project 1 173117798 173135170 - Gm37839 lincRNA lincRNA MGP_C3HHeJ_T0012026.1 MGP_C3HHeJ_G0010130.1 mouse_genomes_project 1 83571583 83572213 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002920.1 MGP_C3HHeJ_G0002743.1 mouse_genomes_project 1 195192757 195197475 + Gm37422 antisense antisense MGP_C3HHeJ_T0011924.1 MGP_C3HHeJ_G0010028.1 mouse_genomes_project 1 48518021 48519727 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002714.1 MGP_C3HHeJ_G0002584.1 mouse_genomes_project 1 35670468 35674913 - 4930439A04Rik antisense antisense MGP_C3HHeJ_T0002715.1 MGP_C3HHeJ_G0002584.1 mouse_genomes_project 1 35674295 35674929 - 4930439A04Rik antisense antisense MGP_C3HHeJ_T0005944.1 MGP_C3HHeJ_G0004970.1 mouse_genomes_project 1 188121925 188122079 + Gm38079 lincRNA lincRNA MGP_C3HHeJ_T0009470.1 MGP_C3HHeJ_G0007603.1 mouse_genomes_project 1 183243158 183243279 - Gm27458 miRNA miRNA MGP_C3HHeJ_T0000491.1 MGP_C3HHeJ_G0000438.1 mouse_genomes_project 1 75759545 75761737 - TEC TEC MGP_C3HHeJ_T0023923.1 MGP_C3HHeJ_G0016693.1 mouse_genomes_project 1 196063163 196282327 - MGP_C3HHeJ_P0023923 Rps6kc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023924.1 MGP_C3HHeJ_G0016693.1 mouse_genomes_project 1 196138100 196200289 - MGP_C3HHeJ_P0023924 Rps6kc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023925.1 MGP_C3HHeJ_G0016693.1 mouse_genomes_project 1 196138100 196282350 - MGP_C3HHeJ_P0023925 Rps6kc1 protein_coding protein_coding MGP_C3HHeJ_T0023926.1 MGP_C3HHeJ_G0016693.1 mouse_genomes_project 1 196138100 196282318 - MGP_C3HHeJ_P0023926 Rps6kc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023927.1 MGP_C3HHeJ_G0016693.1 mouse_genomes_project 1 196160721 196212024 - Rps6kc1 protein_coding retained_intron MGP_C3HHeJ_T0023928.1 MGP_C3HHeJ_G0016693.1 mouse_genomes_project 1 196163100 196282314 - Rps6kc1 protein_coding retained_intron MGP_C3HHeJ_T0023929.1 MGP_C3HHeJ_G0016693.1 mouse_genomes_project 1 196175145 196176721 - Rps6kc1 protein_coding retained_intron MGP_C3HHeJ_T0023930.1 MGP_C3HHeJ_G0016693.1 mouse_genomes_project 1 196241838 196270152 - Rps6kc1 protein_coding processed_transcript MGP_C3HHeJ_T0023931.1 MGP_C3HHeJ_G0016693.1 mouse_genomes_project 1 196255176 196282349 - MGP_C3HHeJ_P0023931 Rps6kc1 protein_coding protein_coding MGP_C3HHeJ_T0101599.1 MGP_C3HHeJ_G0039565.1 mouse_genomes_project 1 178671154 178671620 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0000673.1 MGP_C3HHeJ_G0000618.1 mouse_genomes_project 1 161962550 161965168 + TEC TEC MGP_C3HHeJ_T0000608.1 MGP_C3HHeJ_G0000554.1 mouse_genomes_project 1 137346831 137348921 - TEC TEC MGP_C3HHeJ_T0002821.1 MGP_C3HHeJ_G0002664.1 mouse_genomes_project 1 135184256 135187728 + Gm10538 antisense antisense MGP_C3HHeJ_T0012248.1 MGP_C3HHeJ_G0010352.1 mouse_genomes_project 1 186326961 186328808 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011777.1 MGP_C3HHeJ_G0009881.1 mouse_genomes_project 1 4881007 4883230 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011751.1 MGP_C3HHeJ_G0009855.1 mouse_genomes_project 1 1588498 1592335 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021032.1 MGP_C3HHeJ_G0016068.1 mouse_genomes_project 1 92240587 92267548 + MGP_C3HHeJ_P0021032 Ramp1 protein_coding protein_coding MGP_C3HHeJ_T0021033.1 MGP_C3HHeJ_G0016068.1 mouse_genomes_project 1 92240807 92267548 + MGP_C3HHeJ_P0021033 Ramp1 protein_coding protein_coding MGP_C3HHeJ_T0021034.1 MGP_C3HHeJ_G0016068.1 mouse_genomes_project 1 92240811 92286371 + MGP_C3HHeJ_P0021034 Ramp1 protein_coding protein_coding MGP_C3HHeJ_T0009432.1 MGP_C3HHeJ_G0007565.1 mouse_genomes_project 1 94519412 94519476 + Mir6902 miRNA miRNA MGP_C3HHeJ_T0002934.1 MGP_C3HHeJ_G0002751.1 mouse_genomes_project 1 197474279 197482580 + Gm26879 antisense antisense MGP_C3HHeJ_T0011967.1 MGP_C3HHeJ_G0010071.1 mouse_genomes_project 1 60713267 60713798 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021884.1 MGP_C3HHeJ_G0016254.1 mouse_genomes_project 1 135829975 135839783 + MGP_C3HHeJ_P0021884 Ren1 protein_coding protein_coding MGP_C3HHeJ_T0021885.1 MGP_C3HHeJ_G0016254.1 mouse_genomes_project 1 135831374 135833742 + MGP_C3HHeJ_P0021885 Ren1 protein_coding protein_coding MGP_C3HHeJ_T0023405.1 MGP_C3HHeJ_G0016573.1 mouse_genomes_project 1 178161736 178168225 + MGP_C3HHeJ_P0023405 protein_coding protein_coding MGP_C3HHeJ_T0002752.1 MGP_C3HHeJ_G0002613.1 mouse_genomes_project 1 61605097 61691287 - Pard3bos1 antisense antisense MGP_C3HHeJ_T0002753.1 MGP_C3HHeJ_G0002613.1 mouse_genomes_project 1 61625511 61691365 - Pard3bos1 antisense antisense MGP_C3HHeJ_T0009476.1 MGP_C3HHeJ_G0007609.1 mouse_genomes_project 1 195835134 195835222 - miRNA miRNA MGP_C3HHeJ_T0011862.1 MGP_C3HHeJ_G0009966.1 mouse_genomes_project 1 31248370 31249121 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023874.1 MGP_C3HHeJ_G0016685.1 mouse_genomes_project 1 192830163 193288724 + MGP_C3HHeJ_P0023874 Esrrg protein_coding protein_coding MGP_C3HHeJ_T0023875.1 MGP_C3HHeJ_G0016685.1 mouse_genomes_project 1 192830401 193460469 + MGP_C3HHeJ_P0023875 Esrrg protein_coding protein_coding MGP_C3HHeJ_T0023876.1 MGP_C3HHeJ_G0016685.1 mouse_genomes_project 1 192831067 193021877 + Esrrg protein_coding processed_transcript MGP_C3HHeJ_T0023877.1 MGP_C3HHeJ_G0016685.1 mouse_genomes_project 1 193235809 193460968 + MGP_C3HHeJ_P0023877 Esrrg protein_coding protein_coding MGP_C3HHeJ_T0023878.1 MGP_C3HHeJ_G0016685.1 mouse_genomes_project 1 193235850 193460967 + MGP_C3HHeJ_P0023878 Esrrg protein_coding protein_coding MGP_C3HHeJ_T0097964.1 MGP_C3HHeJ_G0036176.1 mouse_genomes_project 1 120632312 120632429 - Gm22094 rRNA rRNA MGP_C3HHeJ_T0005650.1 MGP_C3HHeJ_G0004738.1 mouse_genomes_project 1 50413979 50416481 + Gm29325 lincRNA lincRNA MGP_C3HHeJ_T0011883.1 MGP_C3HHeJ_G0009987.1 mouse_genomes_project 1 35837899 35839689 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005737.1 MGP_C3HHeJ_G0004802.1 mouse_genomes_project 1 83357039 83357582 + Gm28942 lincRNA lincRNA MGP_C3HHeJ_T0016790.1 MGP_C3HHeJ_G0014867.1 mouse_genomes_project 1 90945629 90947258 + D130058E05Rik processed_transcript antisense MGP_C3HHeJ_T0016791.1 MGP_C3HHeJ_G0014867.1 mouse_genomes_project 1 90945656 90948686 + D130058E05Rik processed_transcript retained_intron MGP_C3HHeJ_T0024069.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198588711 198619966 - MGP_C3HHeJ_P0024069 Traf3ip3 protein_coding protein_coding MGP_C3HHeJ_T0024070.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198588752 198620179 - MGP_C3HHeJ_P0024070 Traf3ip3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024071.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198588762 198620179 - MGP_C3HHeJ_P0024071 Traf3ip3 protein_coding protein_coding MGP_C3HHeJ_T0024072.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198592495 198598073 - MGP_C3HHeJ_P0024072 Traf3ip3 protein_coding protein_coding MGP_C3HHeJ_T0024073.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198592499 198616454 - Traf3ip3 protein_coding retained_intron MGP_C3HHeJ_T0024074.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198597828 198607555 - MGP_C3HHeJ_P0024074 Traf3ip3 protein_coding protein_coding MGP_C3HHeJ_T0024075.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198597917 198600395 - MGP_C3HHeJ_P0024075 Traf3ip3 protein_coding protein_coding MGP_C3HHeJ_T0024076.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198598444 198620087 - Traf3ip3 protein_coding retained_intron MGP_C3HHeJ_T0024077.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198607620 198620148 - Traf3ip3 protein_coding retained_intron MGP_C3HHeJ_T0024078.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198607787 198616603 - MGP_C3HHeJ_P0024078 Traf3ip3 protein_coding protein_coding MGP_C3HHeJ_T0024079.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198616659 198620130 - Traf3ip3 protein_coding processed_transcript MGP_C3HHeJ_T0024080.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198616666 198620134 - Traf3ip3 protein_coding processed_transcript MGP_C3HHeJ_T0024081.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198619527 198620335 - Traf3ip3 protein_coding processed_transcript MGP_C3HHeJ_T0021390.1 MGP_C3HHeJ_G0016149.1 mouse_genomes_project 1 109266923 109286062 + MGP_C3HHeJ_P0021390 Serpinb2 protein_coding protein_coding MGP_C3HHeJ_T0021391.1 MGP_C3HHeJ_G0016149.1 mouse_genomes_project 1 109266997 109286056 + MGP_C3HHeJ_P0021391 Serpinb2 protein_coding protein_coding MGP_C3HHeJ_T0021392.1 MGP_C3HHeJ_G0016149.1 mouse_genomes_project 1 109282511 109295814 + MGP_C3HHeJ_P0021392 Serpinb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021393.1 MGP_C3HHeJ_G0016149.1 mouse_genomes_project 1 109284225 109292999 + MGP_C3HHeJ_P0021393 Serpinb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005644.1 MGP_C3HHeJ_G0004733.1 mouse_genomes_project 1 46251763 46284565 + Gm28826 lincRNA lincRNA MGP_C3HHeJ_T0098609.1 MGP_C3HHeJ_G0036803.1 mouse_genomes_project 1 31567228 31567334 + Gm23453 snRNA snRNA MGP_C3HHeJ_T0020664.1 MGP_C3HHeJ_G0015988.1 mouse_genomes_project 1 83376366 83438727 + MGP_C3HHeJ_P0020664 Agfg1 protein_coding protein_coding MGP_C3HHeJ_T0020665.1 MGP_C3HHeJ_G0015988.1 mouse_genomes_project 1 83376380 83433926 + MGP_C3HHeJ_P0020665 Agfg1 protein_coding protein_coding MGP_C3HHeJ_T0020666.1 MGP_C3HHeJ_G0015988.1 mouse_genomes_project 1 83376552 83433926 + MGP_C3HHeJ_P0020666 Agfg1 protein_coding protein_coding MGP_C3HHeJ_T0020667.1 MGP_C3HHeJ_G0015988.1 mouse_genomes_project 1 83376554 83433824 + MGP_C3HHeJ_P0020667 Agfg1 protein_coding protein_coding MGP_C3HHeJ_T0020668.1 MGP_C3HHeJ_G0015988.1 mouse_genomes_project 1 83376557 83433066 + MGP_C3HHeJ_P0020668 Agfg1 protein_coding protein_coding MGP_C3HHeJ_T0020669.1 MGP_C3HHeJ_G0015988.1 mouse_genomes_project 1 83376557 83433220 + MGP_C3HHeJ_P0020669 Agfg1 protein_coding protein_coding MGP_C3HHeJ_T0020670.1 MGP_C3HHeJ_G0015988.1 mouse_genomes_project 1 83376617 83432667 + MGP_C3HHeJ_P0020670 Agfg1 protein_coding protein_coding MGP_C3HHeJ_T0020671.1 MGP_C3HHeJ_G0015988.1 mouse_genomes_project 1 83376956 83417676 + MGP_C3HHeJ_P0020671 Agfg1 protein_coding protein_coding MGP_C3HHeJ_T0005679.1 MGP_C3HHeJ_G0004761.1 mouse_genomes_project 1 62662789 62673803 - Gm4208 lincRNA lincRNA MGP_C3HHeJ_T0011912.1 MGP_C3HHeJ_G0010016.1 mouse_genomes_project 1 44741083 44741347 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023701.1 MGP_C3HHeJ_G0016649.1 mouse_genomes_project 1 186807525 186823487 + protein_coding retained_intron MGP_C3HHeJ_T0023702.1 MGP_C3HHeJ_G0016649.1 mouse_genomes_project 1 186809573 186837667 + MGP_C3HHeJ_P0023702 protein_coding protein_coding MGP_C3HHeJ_T0023703.1 MGP_C3HHeJ_G0016649.1 mouse_genomes_project 1 186811277 186815512 + protein_coding processed_transcript MGP_C3HHeJ_T0099860.1 MGP_C3HHeJ_G0038054.1 mouse_genomes_project 1 79945523 79945649 - Gm24160 snoRNA snoRNA MGP_C3HHeJ_T0023373.1 MGP_C3HHeJ_G0016558.1 mouse_genomes_project 1 176921070 176926824 - MGP_C3HHeJ_P0023373 Fcrl6 protein_coding protein_coding MGP_C3HHeJ_T0023374.1 MGP_C3HHeJ_G0016558.1 mouse_genomes_project 1 176921965 176926820 - Fcrl6 protein_coding retained_intron MGP_C3HHeJ_T0023375.1 MGP_C3HHeJ_G0016558.1 mouse_genomes_project 1 176922404 176926824 - Fcrl6 protein_coding retained_intron MGP_C3HHeJ_T0005925.1 MGP_C3HHeJ_G0004957.1 mouse_genomes_project 1 182248187 182253691 - Gm37280 lincRNA lincRNA MGP_C3HHeJ_T0009382.1 MGP_C3HHeJ_G0007515.1 mouse_genomes_project 1 18147552 18147671 + Mir133b miRNA miRNA MGP_C3HHeJ_T0002833.1 MGP_C3HHeJ_G0002672.1 mouse_genomes_project 1 138174935 138190115 + Gm4793 antisense antisense MGP_C3HHeJ_T0002914.1 MGP_C3HHeJ_G0002738.1 mouse_genomes_project 1 192564703 192595314 - Gm38155 antisense antisense MGP_C3HHeJ_T0011849.1 MGP_C3HHeJ_G0009953.1 mouse_genomes_project 1 28762621 28762949 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005645.1 MGP_C3HHeJ_G0004734.1 mouse_genomes_project 1 48364049 48452699 + C230029F24Rik lincRNA lincRNA MGP_C3HHeJ_T0005646.1 MGP_C3HHeJ_G0004734.1 mouse_genomes_project 1 48364049 48454980 + C230029F24Rik lincRNA lincRNA MGP_C3HHeJ_T0023241.1 MGP_C3HHeJ_G0016526.1 mouse_genomes_project 1 175344738 175345233 + Tstd1 protein_coding processed_transcript MGP_C3HHeJ_T0023242.1 MGP_C3HHeJ_G0016526.1 mouse_genomes_project 1 175344899 175346219 + MGP_C3HHeJ_P0023242 Tstd1 protein_coding protein_coding MGP_C3HHeJ_T0023243.1 MGP_C3HHeJ_G0016526.1 mouse_genomes_project 1 175345585 175346218 + Tstd1 protein_coding retained_intron MGP_C3HHeJ_T0021125.1 MGP_C3HHeJ_G0016090.1 mouse_genomes_project 1 93790704 93793469 - protein_coding retained_intron MGP_C3HHeJ_T0021126.1 MGP_C3HHeJ_G0016090.1 mouse_genomes_project 1 93790704 93795483 - MGP_C3HHeJ_P0021126 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021127.1 MGP_C3HHeJ_G0016090.1 mouse_genomes_project 1 93790704 93795545 - MGP_C3HHeJ_P0021127 protein_coding protein_coding MGP_C3HHeJ_T0021128.1 MGP_C3HHeJ_G0016090.1 mouse_genomes_project 1 93790704 93794124 - MGP_C3HHeJ_P0021128 protein_coding protein_coding MGP_C3HHeJ_T0021129.1 MGP_C3HHeJ_G0016090.1 mouse_genomes_project 1 93792929 93795545 - protein_coding retained_intron MGP_C3HHeJ_T0005826.1 MGP_C3HHeJ_G0004876.1 mouse_genomes_project 1 133145302 133165530 + Gm28856 lincRNA lincRNA MGP_C3HHeJ_T0011876.1 MGP_C3HHeJ_G0009980.1 mouse_genomes_project 1 32968145 32968293 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011916.1 MGP_C3HHeJ_G0010020.1 mouse_genomes_project 1 47010636 47011463 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000526.1 MGP_C3HHeJ_G0000473.1 mouse_genomes_project 1 87837624 87840552 + TEC TEC MGP_C3HHeJ_T0011847.1 MGP_C3HHeJ_G0009951.1 mouse_genomes_project 1 27142914 27143464 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005711.1 MGP_C3HHeJ_G0004783.1 mouse_genomes_project 1 73692113 73719521 + D530049I02Rik lincRNA lincRNA MGP_C3HHeJ_T0019086.1 MGP_C3HHeJ_G0015695.1 mouse_genomes_project 1 34740317 34778719 + MGP_C3HHeJ_P0019086 Cnnm4 protein_coding protein_coding MGP_C3HHeJ_T0019087.1 MGP_C3HHeJ_G0015695.1 mouse_genomes_project 1 34741174 34742546 + Cnnm4 protein_coding retained_intron MGP_C3HHeJ_T0005757.1 MGP_C3HHeJ_G0004820.1 mouse_genomes_project 1 91305632 91309087 + Gm28723 lincRNA lincRNA MGP_C3HHeJ_T0000667.1 MGP_C3HHeJ_G0000612.1 mouse_genomes_project 1 160219855 160225067 - TEC TEC MGP_C3HHeJ_T0000767.1 MGP_C3HHeJ_G0000710.1 mouse_genomes_project 1 198244170 198246267 - TEC TEC MGP_C3HHeJ_T0000768.1 MGP_C3HHeJ_G0000710.1 mouse_genomes_project 1 198244221 198245772 - TEC TEC MGP_C3HHeJ_T0023743.1 MGP_C3HHeJ_G0016656.1 mouse_genomes_project 1 187582391 187632378 - MGP_C3HHeJ_P0023743 Capn2 protein_coding protein_coding MGP_C3HHeJ_T0023744.1 MGP_C3HHeJ_G0016656.1 mouse_genomes_project 1 187585345 187594931 - Capn2 protein_coding retained_intron MGP_C3HHeJ_T0023745.1 MGP_C3HHeJ_G0016656.1 mouse_genomes_project 1 187587670 187596618 - Capn2 protein_coding retained_intron MGP_C3HHeJ_T0023746.1 MGP_C3HHeJ_G0016656.1 mouse_genomes_project 1 187598987 187608348 - Capn2 protein_coding retained_intron MGP_C3HHeJ_T0023747.1 MGP_C3HHeJ_G0016656.1 mouse_genomes_project 1 187598992 187632462 - Capn2 protein_coding retained_intron MGP_C3HHeJ_T0005967.1 MGP_C3HHeJ_G0004987.1 mouse_genomes_project 1 191366773 191415755 + Gm37134 lincRNA lincRNA MGP_C3HHeJ_T0000427.1 MGP_C3HHeJ_G0000374.1 mouse_genomes_project 1 39049997 39053905 - TEC TEC MGP_C3HHeJ_T0011893.1 MGP_C3HHeJ_G0009997.1 mouse_genomes_project 1 42043549 42043929 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020961.1 MGP_C3HHeJ_G0016051.1 mouse_genomes_project 1 89271224 89361740 + MGP_C3HHeJ_P0020961 Trpm8 protein_coding protein_coding MGP_C3HHeJ_T0020962.1 MGP_C3HHeJ_G0016051.1 mouse_genomes_project 1 89279273 89362182 + MGP_C3HHeJ_P0020962 Trpm8 protein_coding protein_coding MGP_C3HHeJ_T0020963.1 MGP_C3HHeJ_G0016051.1 mouse_genomes_project 1 89292690 89361740 + MGP_C3HHeJ_P0020963 Trpm8 protein_coding protein_coding MGP_C3HHeJ_T0012090.1 MGP_C3HHeJ_G0010194.1 mouse_genomes_project 1 112406777 112407599 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009422.1 MGP_C3HHeJ_G0007555.1 mouse_genomes_project 1 84818367 84818480 - Mir6353 miRNA miRNA MGP_C3HHeJ_T0021007.1 MGP_C3HHeJ_G0016063.1 mouse_genomes_project 1 91966012 92007395 + MGP_C3HHeJ_P0021007 Mlph protein_coding protein_coding MGP_C3HHeJ_T0021008.1 MGP_C3HHeJ_G0016063.1 mouse_genomes_project 1 91978610 91979364 + MGP_C3HHeJ_P0021008 Mlph protein_coding protein_coding MGP_C3HHeJ_T0021009.1 MGP_C3HHeJ_G0016063.1 mouse_genomes_project 1 91993547 91994619 + Mlph protein_coding retained_intron MGP_C3HHeJ_T0002708.1 MGP_C3HHeJ_G0002579.1 mouse_genomes_project 1 32801208 32801717 - 1700101I19Rik antisense antisense MGP_C3HHeJ_T0002709.1 MGP_C3HHeJ_G0002579.1 mouse_genomes_project 1 32801230 32801619 - 1700101I19Rik antisense antisense MGP_C3HHeJ_T0000327.1 MGP_C3HHeJ_G0000277.1 mouse_genomes_project 1 805259 807610 + TEC TEC MGP_C3HHeJ_T0020448.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75521500 75531369 + MGP_C3HHeJ_P0020448 Dnajb2 protein_coding protein_coding MGP_C3HHeJ_T0020449.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75521559 75530485 + MGP_C3HHeJ_P0020449 Dnajb2 protein_coding protein_coding MGP_C3HHeJ_T0020450.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75521559 75530485 + MGP_C3HHeJ_P0020450 Dnajb2 protein_coding protein_coding MGP_C3HHeJ_T0020451.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75521563 75531373 + MGP_C3HHeJ_P0020451 Dnajb2 protein_coding protein_coding MGP_C3HHeJ_T0020452.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75521581 75531371 + MGP_C3HHeJ_P0020452 Dnajb2 protein_coding protein_coding MGP_C3HHeJ_T0020453.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75521607 75530736 + MGP_C3HHeJ_P0020453 Dnajb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020454.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75521650 75531371 + MGP_C3HHeJ_P0020454 Dnajb2 protein_coding protein_coding MGP_C3HHeJ_T0020455.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75521708 75524422 + MGP_C3HHeJ_P0020455 Dnajb2 protein_coding protein_coding MGP_C3HHeJ_T0020456.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75521866 75522776 + Dnajb2 protein_coding retained_intron MGP_C3HHeJ_T0020457.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75522169 75522619 + Dnajb2 protein_coding retained_intron MGP_C3HHeJ_T0020458.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75524012 75526596 + Dnajb2 protein_coding retained_intron MGP_C3HHeJ_T0020459.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75527083 75530608 + MGP_C3HHeJ_P0020459 Dnajb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0101601.1 MGP_C3HHeJ_G0039567.1 mouse_genomes_project 1 178757914 178759294 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005735.1 MGP_C3HHeJ_G0004801.1 mouse_genomes_project 1 80894500 80924112 + 1700016L21Rik lincRNA lincRNA MGP_C3HHeJ_T0005736.1 MGP_C3HHeJ_G0004801.1 mouse_genomes_project 1 80894508 80928319 + 1700016L21Rik lincRNA lincRNA MGP_C3HHeJ_T0011144.1 MGP_C3HHeJ_G0009277.1 mouse_genomes_project 1 11175176 11175484 + Gm25491 misc_RNA misc_RNA MGP_C3HHeJ_T0018899.1 MGP_C3HHeJ_G0015662.1 mouse_genomes_project 1 22324279 22357756 + MGP_C3HHeJ_P0018899 Lmbrd1 protein_coding protein_coding MGP_C3HHeJ_T0018900.1 MGP_C3HHeJ_G0015662.1 mouse_genomes_project 1 22324358 22377234 + MGP_C3HHeJ_P0018900 Lmbrd1 protein_coding protein_coding MGP_C3HHeJ_T0018901.1 MGP_C3HHeJ_G0015662.1 mouse_genomes_project 1 22324376 22413234 + MGP_C3HHeJ_P0018901 Lmbrd1 protein_coding protein_coding MGP_C3HHeJ_T0018902.1 MGP_C3HHeJ_G0015662.1 mouse_genomes_project 1 22373981 22390117 + Lmbrd1 protein_coding retained_intron MGP_C3HHeJ_T0018903.1 MGP_C3HHeJ_G0015662.1 mouse_genomes_project 1 22390041 22409594 + MGP_C3HHeJ_P0018903 Lmbrd1 protein_coding protein_coding MGP_C3HHeJ_T0022768.1 MGP_C3HHeJ_G0016423.1 mouse_genomes_project 1 165561920 165566171 + MGP_C3HHeJ_P0022768 Pigc protein_coding protein_coding MGP_C3HHeJ_T0022769.1 MGP_C3HHeJ_G0016423.1 mouse_genomes_project 1 165561922 165565066 + MGP_C3HHeJ_P0022769 Pigc protein_coding protein_coding MGP_C3HHeJ_T0022770.1 MGP_C3HHeJ_G0016423.1 mouse_genomes_project 1 165561962 165566170 + MGP_C3HHeJ_P0022770 Pigc protein_coding protein_coding MGP_C3HHeJ_T0022771.1 MGP_C3HHeJ_G0016423.1 mouse_genomes_project 1 165562033 165563608 + MGP_C3HHeJ_P0022771 Pigc protein_coding protein_coding MGP_C3HHeJ_T0022772.1 MGP_C3HHeJ_G0016423.1 mouse_genomes_project 1 165562036 165563267 + MGP_C3HHeJ_P0022772 Pigc protein_coding protein_coding MGP_C3HHeJ_T0022105.1 MGP_C3HHeJ_G0016301.1 mouse_genomes_project 1 138555016 138564531 - MGP_C3HHeJ_P0022105 Igfn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022106.1 MGP_C3HHeJ_G0016301.1 mouse_genomes_project 1 138555023 138607471 - MGP_C3HHeJ_P0022106 Igfn1 protein_coding protein_coding MGP_C3HHeJ_T0022107.1 MGP_C3HHeJ_G0016301.1 mouse_genomes_project 1 138555462 138585664 - MGP_C3HHeJ_P0022107 Igfn1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0022108.1 MGP_C3HHeJ_G0016301.1 mouse_genomes_project 1 138556036 138583873 - MGP_C3HHeJ_P0022108 Igfn1 protein_coding protein_coding MGP_C3HHeJ_T0000606.1 MGP_C3HHeJ_G0000552.1 mouse_genomes_project 1 136610974 136613729 - TEC TEC MGP_C3HHeJ_T0011159.1 MGP_C3HHeJ_G0009292.1 mouse_genomes_project 1 99288147 99288459 + Gm25413 misc_RNA misc_RNA MGP_C3HHeJ_T0023411.1 MGP_C3HHeJ_G0016577.1 mouse_genomes_project 1 178261946 178285042 - MGP_C3HHeJ_P0023411 Ifi204 protein_coding protein_coding MGP_C3HHeJ_T0023412.1 MGP_C3HHeJ_G0016577.1 mouse_genomes_project 1 178275825 178285109 - Ifi204 protein_coding retained_intron MGP_C3HHeJ_T0023945.1 MGP_C3HHeJ_G0016696.1 mouse_genomes_project 1 196375976 196382479 - Mfsd7b protein_coding retained_intron MGP_C3HHeJ_T0023946.1 MGP_C3HHeJ_G0016696.1 mouse_genomes_project 1 196375976 196396674 - MGP_C3HHeJ_P0023946 Mfsd7b protein_coding protein_coding MGP_C3HHeJ_T0023947.1 MGP_C3HHeJ_G0016696.1 mouse_genomes_project 1 196375978 196396483 - MGP_C3HHeJ_P0023947 Mfsd7b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023948.1 MGP_C3HHeJ_G0016696.1 mouse_genomes_project 1 196375979 196378585 - Mfsd7b protein_coding retained_intron MGP_C3HHeJ_T0023949.1 MGP_C3HHeJ_G0016696.1 mouse_genomes_project 1 196383547 196385741 - Mfsd7b protein_coding retained_intron MGP_C3HHeJ_T0023950.1 MGP_C3HHeJ_G0016696.1 mouse_genomes_project 1 196395424 196396640 - MGP_C3HHeJ_P0023950 Mfsd7b protein_coding protein_coding MGP_C3HHeJ_T0009403.1 MGP_C3HHeJ_G0007536.1 mouse_genomes_project 1 54241629 54241734 + Gm24053 miRNA miRNA MGP_C3HHeJ_T0011928.1 MGP_C3HHeJ_G0010032.1 mouse_genomes_project 1 49351648 49352395 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009449.1 MGP_C3HHeJ_G0007582.1 mouse_genomes_project 1 140676651 140676731 + Mir181b-1 miRNA miRNA MGP_C3HHeJ_T0012253.1 MGP_C3HHeJ_G0010357.1 mouse_genomes_project 1 188381057 188397151 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005800.1 MGP_C3HHeJ_G0004857.1 mouse_genomes_project 1 121343697 121353047 + Gm29455 lincRNA lincRNA MGP_C3HHeJ_T0005801.1 MGP_C3HHeJ_G0004857.1 mouse_genomes_project 1 121343739 121400366 + Gm29455 lincRNA lincRNA MGP_C3HHeJ_T0012224.1 MGP_C3HHeJ_G0010328.1 mouse_genomes_project 1 171047260 171047627 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000451.1 MGP_C3HHeJ_G0000398.1 mouse_genomes_project 1 59405817 59407689 - TEC TEC MGP_C3HHeJ_T0002927.1 MGP_C3HHeJ_G0002749.1 mouse_genomes_project 1 197312293 197327028 - 1700034H15Rik antisense antisense MGP_C3HHeJ_T0002928.1 MGP_C3HHeJ_G0002749.1 mouse_genomes_project 1 197316395 197325267 - 1700034H15Rik antisense antisense MGP_C3HHeJ_T0002929.1 MGP_C3HHeJ_G0002749.1 mouse_genomes_project 1 197316397 197325394 - 1700034H15Rik antisense antisense MGP_C3HHeJ_T0002930.1 MGP_C3HHeJ_G0002749.1 mouse_genomes_project 1 197316586 197327861 - 1700034H15Rik antisense antisense MGP_C3HHeJ_T0002931.1 MGP_C3HHeJ_G0002749.1 mouse_genomes_project 1 197320274 197333644 - 1700034H15Rik antisense antisense MGP_C3HHeJ_T0002932.1 MGP_C3HHeJ_G0002749.1 mouse_genomes_project 1 197326111 197333652 - 1700034H15Rik antisense antisense MGP_C3HHeJ_T0022773.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165575108 165888128 - MGP_C3HHeJ_P0022773 Dnm3 protein_coding protein_coding MGP_C3HHeJ_T0022774.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165575113 165578372 - Dnm3 protein_coding retained_intron MGP_C3HHeJ_T0022775.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165579942 166072112 - MGP_C3HHeJ_P0022775 Dnm3 protein_coding protein_coding MGP_C3HHeJ_T0022776.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165582852 166072112 - MGP_C3HHeJ_P0022776 Dnm3 protein_coding protein_coding MGP_C3HHeJ_T0022777.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165584152 165588652 - Dnm3 protein_coding retained_intron MGP_C3HHeJ_T0022778.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165598927 165888072 - MGP_C3HHeJ_P0022778 Dnm3 protein_coding protein_coding MGP_C3HHeJ_T0022779.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165609214 165729491 - Dnm3 protein_coding retained_intron MGP_C3HHeJ_T0022780.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165865540 165888087 - Dnm3 protein_coding processed_transcript MGP_C3HHeJ_T0022781.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165874985 165906161 - Dnm3 protein_coding processed_transcript MGP_C3HHeJ_T0022782.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165911332 166072090 - Dnm3 protein_coding retained_intron MGP_C3HHeJ_T0022783.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165976752 166017081 - Dnm3 protein_coding processed_transcript MGP_C3HHeJ_T0022784.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165997167 165999641 - Dnm3 protein_coding retained_intron MGP_C3HHeJ_T0016767.1 MGP_C3HHeJ_G0014858.1 mouse_genomes_project 1 56544749 56550239 + 9130024F11Rik processed_transcript antisense MGP_C3HHeJ_T0016768.1 MGP_C3HHeJ_G0014858.1 mouse_genomes_project 1 56546519 56548650 + 9130024F11Rik processed_transcript antisense MGP_C3HHeJ_T0016769.1 MGP_C3HHeJ_G0014858.1 mouse_genomes_project 1 56546521 56619406 + 9130024F11Rik processed_transcript antisense MGP_C3HHeJ_T0016770.1 MGP_C3HHeJ_G0014858.1 mouse_genomes_project 1 56547373 56550235 + 9130024F11Rik processed_transcript TEC MGP_C3HHeJ_T0016771.1 MGP_C3HHeJ_G0014858.1 mouse_genomes_project 1 56617283 56626975 + 9130024F11Rik processed_transcript antisense MGP_C3HHeJ_T0012163.1 MGP_C3HHeJ_G0010267.1 mouse_genomes_project 1 146044866 146046136 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002938.1 MGP_C3HHeJ_G0002754.1 mouse_genomes_project 1 198600528 198605634 + Gm15872 antisense antisense MGP_C3HHeJ_T0012217.1 MGP_C3HHeJ_G0010321.1 mouse_genomes_project 1 169339974 169340764 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012239.1 MGP_C3HHeJ_G0010343.1 mouse_genomes_project 1 181517082 181517919 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101547.1 MGP_C3HHeJ_G0039513.1 mouse_genomes_project 1 44783970 44786350 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011158.1 MGP_C3HHeJ_G0009291.1 mouse_genomes_project 1 90689865 90690176 + Gm26037 misc_RNA misc_RNA MGP_C3HHeJ_T0023562.1 MGP_C3HHeJ_G0016622.1 mouse_genomes_project 1 184479304 184560881 + MGP_C3HHeJ_P0023562 Cnst protein_coding protein_coding MGP_C3HHeJ_T0023563.1 MGP_C3HHeJ_G0016622.1 mouse_genomes_project 1 184479433 184515919 + Cnst protein_coding retained_intron MGP_C3HHeJ_T0023564.1 MGP_C3HHeJ_G0016622.1 mouse_genomes_project 1 184479443 184535440 + Cnst protein_coding retained_intron MGP_C3HHeJ_T0023565.1 MGP_C3HHeJ_G0016622.1 mouse_genomes_project 1 184526471 184537548 + Cnst protein_coding processed_transcript MGP_C3HHeJ_T0097832.1 MGP_C3HHeJ_G0036044.1 mouse_genomes_project 1 121550232 121552032 + pseudogene pseudogene MGP_C3HHeJ_T0021775.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134444856 134492814 - MGP_C3HHeJ_P0021775 Mfsd4a protein_coding protein_coding MGP_C3HHeJ_T0021776.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134445299 134451048 - Mfsd4a protein_coding retained_intron MGP_C3HHeJ_T0021777.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134448664 134492868 - MGP_C3HHeJ_P0021777 Mfsd4a protein_coding protein_coding MGP_C3HHeJ_T0021778.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134448822 134492866 - MGP_C3HHeJ_P0021778 Mfsd4a protein_coding protein_coding MGP_C3HHeJ_T0021779.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134448822 134492729 - MGP_C3HHeJ_P0021779 Mfsd4a protein_coding protein_coding MGP_C3HHeJ_T0021780.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134448849 134492965 - MGP_C3HHeJ_P0021780 Mfsd4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021781.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134459790 134492795 - MGP_C3HHeJ_P0021781 Mfsd4a protein_coding protein_coding MGP_C3HHeJ_T0021782.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134459799 134492836 - MGP_C3HHeJ_P0021782 Mfsd4a protein_coding protein_coding MGP_C3HHeJ_T0021783.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134461833 134466902 - Mfsd4a protein_coding processed_transcript MGP_C3HHeJ_T0021784.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134461937 134492803 - MGP_C3HHeJ_P0021784 Mfsd4a protein_coding protein_coding MGP_C3HHeJ_T0021785.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134463662 134471556 - Mfsd4a protein_coding retained_intron MGP_C3HHeJ_T0021786.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134471433 134479056 - MGP_C3HHeJ_P0021786 Mfsd4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018808.1 MGP_C3HHeJ_G0015636.1 mouse_genomes_project 1 15679365 15680336 - MGP_C3HHeJ_P0018808 Defb18 protein_coding protein_coding MGP_C3HHeJ_T0000545.1 MGP_C3HHeJ_G0000492.1 mouse_genomes_project 1 99230977 99232661 - TEC TEC MGP_C3HHeJ_T0018533.1 MGP_C3HHeJ_G0015588.1 mouse_genomes_project 1 2665870 2668726 + Oprk1 protein_coding retained_intron MGP_C3HHeJ_T0018534.1 MGP_C3HHeJ_G0015588.1 mouse_genomes_project 1 2665897 2683541 + MGP_C3HHeJ_P0018534 Oprk1 protein_coding protein_coding MGP_C3HHeJ_T0018535.1 MGP_C3HHeJ_G0015588.1 mouse_genomes_project 1 2665961 2680272 + MGP_C3HHeJ_P0018535 Oprk1 protein_coding protein_coding MGP_C3HHeJ_T0018536.1 MGP_C3HHeJ_G0015588.1 mouse_genomes_project 1 2666345 2681420 + MGP_C3HHeJ_P0018536 Oprk1 protein_coding protein_coding MGP_C3HHeJ_T0018537.1 MGP_C3HHeJ_G0015588.1 mouse_genomes_project 1 2673908 2680559 + Oprk1 protein_coding retained_intron MGP_C3HHeJ_T0005919.1 MGP_C3HHeJ_G0004951.1 mouse_genomes_project 1 175233801 175239390 - Gm20045 lincRNA lincRNA MGP_C3HHeJ_T0099838.1 MGP_C3HHeJ_G0038032.1 mouse_genomes_project 1 37955181 37955397 + Gm24826 snoRNA snoRNA MGP_C3HHeJ_T0000444.1 MGP_C3HHeJ_G0000391.1 mouse_genomes_project 1 54537916 54539710 - TEC TEC MGP_C3HHeJ_T0011976.1 MGP_C3HHeJ_G0010080.1 mouse_genomes_project 1 62497778 62498865 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019768.1 MGP_C3HHeJ_G0015825.1 mouse_genomes_project 1 58207359 58217698 + MGP_C3HHeJ_P0019768 Ndufb3 protein_coding protein_coding MGP_C3HHeJ_T0002857.1 MGP_C3HHeJ_G0002692.1 mouse_genomes_project 1 163412881 163416234 - Gm38039 antisense antisense MGP_C3HHeJ_T0005988.1 MGP_C3HHeJ_G0005004.1 mouse_genomes_project 1 198940763 198943701 - 4631405K08Rik lincRNA lincRNA MGP_C3HHeJ_T0009456.1 MGP_C3HHeJ_G0007589.1 mouse_genomes_project 1 165815038 165815148 + Mir199a-2 miRNA miRNA MGP_C3HHeJ_T0011761.1 MGP_C3HHeJ_G0009865.1 mouse_genomes_project 1 2696326 2696720 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005865.1 MGP_C3HHeJ_G0004909.1 mouse_genomes_project 1 154933531 154939602 - 2810414N06Rik lincRNA lincRNA MGP_C3HHeJ_T0005649.1 MGP_C3HHeJ_G0004737.1 mouse_genomes_project 1 50109574 50110884 + Gm28322 lincRNA lincRNA MGP_C3HHeJ_T0000461.1 MGP_C3HHeJ_G0000408.1 mouse_genomes_project 1 61487602 61490338 + TEC TEC MGP_C3HHeJ_T0018939.1 MGP_C3HHeJ_G0015670.1 mouse_genomes_project 1 29259597 29261048 + MGP_C3HHeJ_P0018939 Pih1d3 protein_coding protein_coding MGP_C3HHeJ_T0020197.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74205207 74420118 - MGP_C3HHeJ_P0020197 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020198.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74205208 74420120 - MGP_C3HHeJ_P0020198 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020199.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74205208 74386320 - MGP_C3HHeJ_P0020199 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020200.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74208887 74223500 - MGP_C3HHeJ_P0020200 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020201.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74209069 74289860 - MGP_C3HHeJ_P0020201 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020202.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74209093 74289860 - MGP_C3HHeJ_P0020202 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020203.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74209506 74420118 - MGP_C3HHeJ_P0020203 Tns1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0020204.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74220114 74235994 - MGP_C3HHeJ_P0020204 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020205.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74220401 74223204 - Tns1 protein_coding retained_intron MGP_C3HHeJ_T0020206.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74220401 74225798 - Tns1 protein_coding processed_transcript MGP_C3HHeJ_T0020207.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74220614 74225492 - Tns1 protein_coding processed_transcript MGP_C3HHeJ_T0020208.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74248348 74258066 - MGP_C3HHeJ_P0020208 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020209.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74275229 74281623 - Tns1 protein_coding retained_intron MGP_C3HHeJ_T0020210.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74284258 74292803 - Tns1 protein_coding retained_intron MGP_C3HHeJ_T0020211.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74284910 74310740 - Tns1 protein_coding processed_transcript MGP_C3HHeJ_T0020212.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74286637 74292803 - Tns1 protein_coding processed_transcript MGP_C3HHeJ_T0020213.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74286742 74295887 - MGP_C3HHeJ_P0020213 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020214.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74287701 74331486 - MGP_C3HHeJ_P0020214 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020215.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74289306 74292186 - Tns1 protein_coding retained_intron MGP_C3HHeJ_T0020216.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74289775 74391787 - MGP_C3HHeJ_P0020216 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020217.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74291545 74391830 - MGP_C3HHeJ_P0020217 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020218.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74296624 74331510 - Tns1 protein_coding processed_transcript MGP_C3HHeJ_T0023066.1 MGP_C3HHeJ_G0016490.1 mouse_genomes_project 1 173971284 174006830 - MGP_C3HHeJ_P0023066 Uap1 protein_coding protein_coding MGP_C3HHeJ_T0023067.1 MGP_C3HHeJ_G0016490.1 mouse_genomes_project 1 173971349 174006819 - MGP_C3HHeJ_P0023067 Uap1 protein_coding protein_coding MGP_C3HHeJ_T0023068.1 MGP_C3HHeJ_G0016490.1 mouse_genomes_project 1 173971350 174006819 - MGP_C3HHeJ_P0023068 Uap1 protein_coding protein_coding MGP_C3HHeJ_T0023069.1 MGP_C3HHeJ_G0016490.1 mouse_genomes_project 1 173971381 173973061 - Uap1 protein_coding retained_intron MGP_C3HHeJ_T0023070.1 MGP_C3HHeJ_G0016490.1 mouse_genomes_project 1 173979672 174006665 - Uap1 protein_coding retained_intron MGP_C3HHeJ_T0023071.1 MGP_C3HHeJ_G0016490.1 mouse_genomes_project 1 173991217 173991793 - Uap1 protein_coding processed_transcript MGP_C3HHeJ_T0023072.1 MGP_C3HHeJ_G0016490.1 mouse_genomes_project 1 173991235 174006639 - Uap1 protein_coding processed_transcript MGP_C3HHeJ_T0023073.1 MGP_C3HHeJ_G0016490.1 mouse_genomes_project 1 173996170 174006662 - Uap1 protein_coding retained_intron MGP_C3HHeJ_T0023074.1 MGP_C3HHeJ_G0016490.1 mouse_genomes_project 1 174000099 174006759 - Uap1 protein_coding processed_transcript MGP_C3HHeJ_T0021641.1 MGP_C3HHeJ_G0016199.1 mouse_genomes_project 1 130611378 130668030 - MGP_C3HHeJ_P0021641 Dars protein_coding protein_coding MGP_C3HHeJ_T0021642.1 MGP_C3HHeJ_G0016199.1 mouse_genomes_project 1 130623519 130628129 - Dars protein_coding retained_intron MGP_C3HHeJ_T0021643.1 MGP_C3HHeJ_G0016199.1 mouse_genomes_project 1 130662788 130668039 - MGP_C3HHeJ_P0021643 Dars protein_coding protein_coding MGP_C3HHeJ_T0021713.1 MGP_C3HHeJ_G0016220.1 mouse_genomes_project 1 133573100 133596446 - MGP_C3HHeJ_P0021713 Rassf5 protein_coding protein_coding MGP_C3HHeJ_T0021714.1 MGP_C3HHeJ_G0016220.1 mouse_genomes_project 1 133575215 133642485 - MGP_C3HHeJ_P0021714 Rassf5 protein_coding protein_coding MGP_C3HHeJ_T0021715.1 MGP_C3HHeJ_G0016220.1 mouse_genomes_project 1 133603952 133642613 - Rassf5 protein_coding processed_transcript MGP_C3HHeJ_T0023791.1 MGP_C3HHeJ_G0016665.1 mouse_genomes_project 1 188497323 188520275 + MGP_C3HHeJ_P0023791 Taf1a protein_coding protein_coding MGP_C3HHeJ_T0023792.1 MGP_C3HHeJ_G0016665.1 mouse_genomes_project 1 188497327 188517935 + MGP_C3HHeJ_P0023792 Taf1a protein_coding protein_coding MGP_C3HHeJ_T0023793.1 MGP_C3HHeJ_G0016665.1 mouse_genomes_project 1 188497404 188521132 + MGP_C3HHeJ_P0023793 Taf1a protein_coding unknown_likely_coding MGP_C3HHeJ_T0023794.1 MGP_C3HHeJ_G0016665.1 mouse_genomes_project 1 188519530 188521133 + MGP_C3HHeJ_P0023794 Taf1a protein_coding protein_coding MGP_C3HHeJ_T0009380.1 MGP_C3HHeJ_G0007513.1 mouse_genomes_project 1 11447601 11449225 + miRNA miRNA MGP_C3HHeJ_T0022884.1 MGP_C3HHeJ_G0016449.1 mouse_genomes_project 1 167930525 167949592 - MGP_C3HHeJ_P0022884 Blzf1 protein_coding protein_coding MGP_C3HHeJ_T0022885.1 MGP_C3HHeJ_G0016449.1 mouse_genomes_project 1 167932114 167949597 - MGP_C3HHeJ_P0022885 Blzf1 protein_coding protein_coding MGP_C3HHeJ_T0022886.1 MGP_C3HHeJ_G0016449.1 mouse_genomes_project 1 167932855 167949597 - MGP_C3HHeJ_P0022886 Blzf1 protein_coding protein_coding MGP_C3HHeJ_T0022887.1 MGP_C3HHeJ_G0016449.1 mouse_genomes_project 1 167941649 167949380 - Blzf1 protein_coding processed_transcript MGP_C3HHeJ_T0022889.1 MGP_C3HHeJ_G0016449.1 mouse_genomes_project 1 167947309 167949579 - Blzf1 protein_coding retained_intron MGP_C3HHeJ_T0023428.1 MGP_C3HHeJ_G0016586.1 mouse_genomes_project 1 178695518 178696442 - MGP_C3HHeJ_P0023428 Olfr231 protein_coding protein_coding MGP_C3HHeJ_T0005860.1 MGP_C3HHeJ_G0004905.1 mouse_genomes_project 1 152512390 152551258 - Gm29398 lincRNA lincRNA MGP_C3HHeJ_T0005861.1 MGP_C3HHeJ_G0004905.1 mouse_genomes_project 1 152521625 152551257 - Gm29398 lincRNA lincRNA MGP_C3HHeJ_T0097959.1 MGP_C3HHeJ_G0036171.1 mouse_genomes_project 1 83781403 83781524 - n-R5s214 rRNA rRNA MGP_C3HHeJ_T0011760.1 MGP_C3HHeJ_G0009864.1 mouse_genomes_project 1 2347783 2348825 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019680.1 MGP_C3HHeJ_G0015811.1 mouse_genomes_project 1 56992701 57005109 + MGP_C3HHeJ_P0019680 9430016H08Rik protein_coding protein_coding MGP_C3HHeJ_T0099840.1 MGP_C3HHeJ_G0038034.1 mouse_genomes_project 1 38014169 38014299 - Gm23722 snoRNA snoRNA MGP_C3HHeJ_T0022869.1 MGP_C3HHeJ_G0016444.1 mouse_genomes_project 1 167685266 167707466 + MGP_C3HHeJ_P0022869 Sell protein_coding protein_coding MGP_C3HHeJ_T0022870.1 MGP_C3HHeJ_G0016444.1 mouse_genomes_project 1 167685369 167703957 + MGP_C3HHeJ_P0022870 Sell protein_coding protein_coding MGP_C3HHeJ_T0022871.1 MGP_C3HHeJ_G0016444.1 mouse_genomes_project 1 167685473 167702977 + MGP_C3HHeJ_P0022871 Sell protein_coding protein_coding MGP_C3HHeJ_T0022872.1 MGP_C3HHeJ_G0016444.1 mouse_genomes_project 1 167692246 167703281 + MGP_C3HHeJ_P0022872 Sell protein_coding protein_coding MGP_C3HHeJ_T0020679.1 MGP_C3HHeJ_G0015992.1 mouse_genomes_project 1 83722854 83744075 + Daw1 protein_coding retained_intron MGP_C3HHeJ_T0020680.1 MGP_C3HHeJ_G0015992.1 mouse_genomes_project 1 83722864 83775297 + MGP_C3HHeJ_P0020680 Daw1 protein_coding protein_coding MGP_C3HHeJ_T0020681.1 MGP_C3HHeJ_G0015992.1 mouse_genomes_project 1 83722864 83775303 + MGP_C3HHeJ_P0020681 Daw1 protein_coding protein_coding MGP_C3HHeJ_T0020682.1 MGP_C3HHeJ_G0015992.1 mouse_genomes_project 1 83722871 83775299 + MGP_C3HHeJ_P0020682 Daw1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020683.1 MGP_C3HHeJ_G0015992.1 mouse_genomes_project 1 83722883 83775303 + MGP_C3HHeJ_P0020683 Daw1 protein_coding protein_coding MGP_C3HHeJ_T0022423.1 MGP_C3HHeJ_G0016363.1 mouse_genomes_project 1 156673028 156700440 + MGP_C3HHeJ_P0022423 Shcbp1l protein_coding protein_coding MGP_C3HHeJ_T0022424.1 MGP_C3HHeJ_G0016363.1 mouse_genomes_project 1 156673038 156687788 + MGP_C3HHeJ_P0022424 Shcbp1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022425.1 MGP_C3HHeJ_G0016363.1 mouse_genomes_project 1 156693213 156696844 + Shcbp1l protein_coding retained_intron MGP_C3HHeJ_T0000571.1 MGP_C3HHeJ_G0000518.1 mouse_genomes_project 1 125621230 125622724 - TEC TEC MGP_C3HHeJ_T0023027.1 MGP_C3HHeJ_G0016478.1 mouse_genomes_project 1 171105813 171124875 + MGP_C3HHeJ_P0023027 Aldh9a1 protein_coding protein_coding MGP_C3HHeJ_T0023028.1 MGP_C3HHeJ_G0016478.1 mouse_genomes_project 1 171106058 171110248 + Aldh9a1 protein_coding processed_transcript MGP_C3HHeJ_T0023029.1 MGP_C3HHeJ_G0016478.1 mouse_genomes_project 1 171106134 171111650 + Aldh9a1 protein_coding retained_intron MGP_C3HHeJ_T0023030.1 MGP_C3HHeJ_G0016478.1 mouse_genomes_project 1 171120508 171123990 + Aldh9a1 protein_coding retained_intron MGP_C3HHeJ_T0019571.1 MGP_C3HHeJ_G0015789.1 mouse_genomes_project 1 52569673 52582393 + MGP_C3HHeJ_P0019571 Osgepl1 protein_coding protein_coding MGP_C3HHeJ_T0019572.1 MGP_C3HHeJ_G0015789.1 mouse_genomes_project 1 52569703 52582224 + MGP_C3HHeJ_P0019572 Osgepl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019573.1 MGP_C3HHeJ_G0015789.1 mouse_genomes_project 1 52569706 52572682 + Osgepl1 protein_coding processed_transcript MGP_C3HHeJ_T0019574.1 MGP_C3HHeJ_G0015789.1 mouse_genomes_project 1 52569706 52574708 + Osgepl1 protein_coding retained_intron MGP_C3HHeJ_T0019575.1 MGP_C3HHeJ_G0015789.1 mouse_genomes_project 1 52569712 52580114 + MGP_C3HHeJ_P0019575 Osgepl1 protein_coding protein_coding MGP_C3HHeJ_T0019576.1 MGP_C3HHeJ_G0015789.1 mouse_genomes_project 1 52569722 52582217 + MGP_C3HHeJ_P0019576 Osgepl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019577.1 MGP_C3HHeJ_G0015789.1 mouse_genomes_project 1 52575758 52582225 + Osgepl1 protein_coding retained_intron MGP_C3HHeJ_T0021903.1 MGP_C3HHeJ_G0016259.1 mouse_genomes_project 1 136105149 136151026 - MGP_C3HHeJ_P0021903 Gm38394 protein_coding protein_coding MGP_C3HHeJ_T0021834.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135018266 135162002 - MGP_C3HHeJ_P0021834 Nfasc protein_coding protein_coding MGP_C3HHeJ_T0021835.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135019061 135162082 - MGP_C3HHeJ_P0021835 Nfasc protein_coding protein_coding MGP_C3HHeJ_T0021836.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135019351 135196649 - MGP_C3HHeJ_P0021836 Nfasc protein_coding protein_coding MGP_C3HHeJ_T0021837.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135019437 135161978 - MGP_C3HHeJ_P0021837 Nfasc protein_coding protein_coding MGP_C3HHeJ_T0021838.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135019440 135087914 - MGP_C3HHeJ_P0021838 Nfasc protein_coding protein_coding MGP_C3HHeJ_T0021839.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135025383 135037041 - Nfasc protein_coding processed_transcript MGP_C3HHeJ_T0021840.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135051034 135196683 - MGP_C3HHeJ_P0021840 Nfasc protein_coding protein_coding MGP_C3HHeJ_T0021841.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135052832 135056358 - Nfasc protein_coding retained_intron MGP_C3HHeJ_T0021842.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135070544 135075681 - Nfasc protein_coding retained_intron MGP_C3HHeJ_T0021843.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135118487 135196664 - Nfasc protein_coding processed_transcript MGP_C3HHeJ_T0011879.1 MGP_C3HHeJ_G0009983.1 mouse_genomes_project 1 33182216 33182445 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018904.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22729700 22894034 - MGP_C3HHeJ_P0018904 Adgrb3 protein_coding protein_coding MGP_C3HHeJ_T0018905.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22729774 23508838 - MGP_C3HHeJ_P0018905 Adgrb3 protein_coding protein_coding MGP_C3HHeJ_T0018906.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22729774 23512190 - MGP_C3HHeJ_P0018906 Adgrb3 protein_coding protein_coding MGP_C3HHeJ_T0018907.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22729774 23512384 - MGP_C3HHeJ_P0018907 Adgrb3 protein_coding protein_coding MGP_C3HHeJ_T0018908.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22729902 23509459 - MGP_C3HHeJ_P0018908 Adgrb3 protein_coding protein_coding MGP_C3HHeJ_T0018909.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22729915 22894308 - Adgrb3 protein_coding retained_intron MGP_C3HHeJ_T0018910.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22754309 22894254 - Adgrb3 protein_coding retained_intron MGP_C3HHeJ_T0018911.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22787542 22869460 - Adgrb3 protein_coding processed_transcript MGP_C3HHeJ_T0018912.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22864986 22870430 - Adgrb3 protein_coding retained_intron MGP_C3HHeJ_T0018913.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22883283 22894035 - Adgrb3 protein_coding retained_intron MGP_C3HHeJ_T0018914.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 23173006 23509046 - Adgrb3 protein_coding retained_intron MGP_C3HHeJ_T0098613.1 MGP_C3HHeJ_G0036807.1 mouse_genomes_project 1 47558524 47558645 - Gm23240 snRNA snRNA MGP_C3HHeJ_T0009409.1 MGP_C3HHeJ_G0007542.1 mouse_genomes_project 1 63961101 63961165 - Mir6899 miRNA miRNA MGP_C3HHeJ_T0020470.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75596961 75606726 - MGP_C3HHeJ_P0020470 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020471.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75596961 75606704 - MGP_C3HHeJ_P0020471 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020472.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75597005 75606060 - MGP_C3HHeJ_P0020472 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020473.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75597630 75606012 - MGP_C3HHeJ_P0020473 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020474.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75597630 75606216 - MGP_C3HHeJ_P0020474 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020475.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75598248 75602825 - Dnpep protein_coding retained_intron MGP_C3HHeJ_T0020476.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75601533 75606476 - Dnpep protein_coding retained_intron MGP_C3HHeJ_T0020477.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75603429 75605870 - MGP_C3HHeJ_P0020477 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020478.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75603432 75606088 - MGP_C3HHeJ_P0020478 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020479.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75604267 75606380 - MGP_C3HHeJ_P0020479 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020480.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75605049 75606514 - MGP_C3HHeJ_P0020480 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020481.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75605413 75606439 - Dnpep protein_coding retained_intron MGP_C3HHeJ_T0020482.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75605436 75607057 - MGP_C3HHeJ_P0020482 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020483.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75605620 75606449 - MGP_C3HHeJ_P0020483 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0012048.1 MGP_C3HHeJ_G0010152.1 mouse_genomes_project 1 94159676 94163052 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005965.1 MGP_C3HHeJ_G0004985.1 mouse_genomes_project 1 190626370 190634819 - Gm2061 lincRNA lincRNA MGP_C3HHeJ_T0012033.1 MGP_C3HHeJ_G0010137.1 mouse_genomes_project 1 87029865 87030195 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023657.1 MGP_C3HHeJ_G0016637.1 mouse_genomes_project 1 185854358 185872530 + MGP_C3HHeJ_P0023657 Sde2 protein_coding protein_coding MGP_C3HHeJ_T0023658.1 MGP_C3HHeJ_G0016637.1 mouse_genomes_project 1 185866516 185870670 + Sde2 protein_coding retained_intron MGP_C3HHeJ_T0021859.1 MGP_C3HHeJ_G0016248.1 mouse_genomes_project 1 135506608 135528232 + MGP_C3HHeJ_P0021859 Pik3c2b protein_coding protein_coding MGP_C3HHeJ_T0021860.1 MGP_C3HHeJ_G0016248.1 mouse_genomes_project 1 135506953 135529036 + Pik3c2b protein_coding retained_intron MGP_C3HHeJ_T0021861.1 MGP_C3HHeJ_G0016248.1 mouse_genomes_project 1 135506953 135543851 + Pik3c2b protein_coding retained_intron MGP_C3HHeJ_T0021862.1 MGP_C3HHeJ_G0016248.1 mouse_genomes_project 1 135506953 135572504 + MGP_C3HHeJ_P0021862 Pik3c2b protein_coding protein_coding MGP_C3HHeJ_T0012039.1 MGP_C3HHeJ_G0010143.1 mouse_genomes_project 1 89711017 89711476 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005599.1 MGP_C3HHeJ_G0004705.1 mouse_genomes_project 1 32510715 32511590 - Gm37958 lincRNA lincRNA MGP_C3HHeJ_T0018962.1 MGP_C3HHeJ_G0015676.1 mouse_genomes_project 1 31923332 31976130 - MGP_C3HHeJ_P0018962 Zfp451 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018963.1 MGP_C3HHeJ_G0015676.1 mouse_genomes_project 1 31923332 31976272 - MGP_C3HHeJ_P0018963 Zfp451 protein_coding protein_coding MGP_C3HHeJ_T0018964.1 MGP_C3HHeJ_G0015676.1 mouse_genomes_project 1 31939312 31967132 - MGP_C3HHeJ_P0018964 Zfp451 protein_coding protein_coding MGP_C3HHeJ_T0018965.1 MGP_C3HHeJ_G0015676.1 mouse_genomes_project 1 31940824 31945706 - MGP_C3HHeJ_P0018965 Zfp451 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018966.1 MGP_C3HHeJ_G0015676.1 mouse_genomes_project 1 31940957 31976171 - MGP_C3HHeJ_P0018966 Zfp451 protein_coding protein_coding MGP_C3HHeJ_T0018967.1 MGP_C3HHeJ_G0015676.1 mouse_genomes_project 1 31943946 31975956 - Zfp451 protein_coding processed_transcript MGP_C3HHeJ_T0018968.1 MGP_C3HHeJ_G0015676.1 mouse_genomes_project 1 31948210 31962507 - Zfp451 protein_coding processed_transcript MGP_C3HHeJ_T0018969.1 MGP_C3HHeJ_G0015676.1 mouse_genomes_project 1 31953876 31976315 - MGP_C3HHeJ_P0018969 Zfp451 protein_coding protein_coding MGP_C3HHeJ_T0018970.1 MGP_C3HHeJ_G0015676.1 mouse_genomes_project 1 31975271 31976340 - Zfp451 protein_coding retained_intron MGP_C3HHeJ_T0020848.1 MGP_C3HHeJ_G0016028.1 mouse_genomes_project 1 88074214 88122619 + MGP_C3HHeJ_P0020848 Efhd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020849.1 MGP_C3HHeJ_G0016028.1 mouse_genomes_project 1 88074214 88122622 + MGP_C3HHeJ_P0020849 Efhd1 protein_coding protein_coding MGP_C3HHeJ_T0020850.1 MGP_C3HHeJ_G0016028.1 mouse_genomes_project 1 88121008 88121525 + Efhd1 protein_coding processed_transcript MGP_C3HHeJ_T0098618.1 MGP_C3HHeJ_G0036812.1 mouse_genomes_project 1 61312618 61312721 + Gm25839 snRNA snRNA MGP_C3HHeJ_T0000480.1 MGP_C3HHeJ_G0000427.1 mouse_genomes_project 1 68821824 68824197 - TEC TEC MGP_C3HHeJ_T0012210.1 MGP_C3HHeJ_G0010314.1 mouse_genomes_project 1 165908568 165908998 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000664.1 MGP_C3HHeJ_G0000609.1 mouse_genomes_project 1 159913127 159919650 + TEC TEC MGP_C3HHeJ_T0021121.1 MGP_C3HHeJ_G0016087.1 mouse_genomes_project 1 93748719 93749717 + MGP_C3HHeJ_P0021121 Olfr1411 protein_coding protein_coding MGP_C3HHeJ_T0022217.1 MGP_C3HHeJ_G0016324.1 mouse_genomes_project 1 142279363 142292504 - MGP_C3HHeJ_P0022217 protein_coding protein_coding MGP_C3HHeJ_T0022218.1 MGP_C3HHeJ_G0016324.1 mouse_genomes_project 1 142282966 142285859 - MGP_C3HHeJ_P0022218 protein_coding protein_coding MGP_C3HHeJ_T0011994.1 MGP_C3HHeJ_G0010098.1 mouse_genomes_project 1 66034409 66034821 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005657.1 MGP_C3HHeJ_G0004743.1 mouse_genomes_project 1 51809414 51819694 - Gm28178 lincRNA lincRNA MGP_C3HHeJ_T0002866.1 MGP_C3HHeJ_G0002699.1 mouse_genomes_project 1 165814847 165822760 + Dnm3os antisense antisense MGP_C3HHeJ_T0002867.1 MGP_C3HHeJ_G0002699.1 mouse_genomes_project 1 165814847 165822762 + Dnm3os antisense antisense MGP_C3HHeJ_T0002868.1 MGP_C3HHeJ_G0002699.1 mouse_genomes_project 1 165814888 165819325 + Dnm3os antisense antisense MGP_C3HHeJ_T0011853.1 MGP_C3HHeJ_G0009957.1 mouse_genomes_project 1 29194659 29194884 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012047.1 MGP_C3HHeJ_G0010151.1 mouse_genomes_project 1 93530018 93530430 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000488.1 MGP_C3HHeJ_G0000435.1 mouse_genomes_project 1 74616330 74619191 + TEC TEC MGP_C3HHeJ_T0023818.1 MGP_C3HHeJ_G0016673.1 mouse_genomes_project 1 190038101 190145308 - MGP_C3HHeJ_P0023818 Mark1 protein_coding protein_coding MGP_C3HHeJ_T0023819.1 MGP_C3HHeJ_G0016673.1 mouse_genomes_project 1 190060818 190145213 - MGP_C3HHeJ_P0023819 Mark1 protein_coding protein_coding MGP_C3HHeJ_T0005930.1 MGP_C3HHeJ_G0004961.1 mouse_genomes_project 1 185755393 185761899 - Gm38293 lincRNA lincRNA MGP_C3HHeJ_T0005709.1 MGP_C3HHeJ_G0004782.1 mouse_genomes_project 1 73683163 73698721 - Pinc lincRNA lincRNA MGP_C3HHeJ_T0005710.1 MGP_C3HHeJ_G0004782.1 mouse_genomes_project 1 73688479 73698721 - Pinc lincRNA lincRNA MGP_C3HHeJ_T0022888.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 167946228 168084798 + MGP_C3HHeJ_P0022888 Nme7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022890.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 167949779 168084373 + MGP_C3HHeJ_P0022890 Nme7 protein_coding protein_coding MGP_C3HHeJ_T0022891.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 167949834 167993638 + Nme7 protein_coding processed_transcript MGP_C3HHeJ_T0022892.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 167949855 167955433 + Nme7 protein_coding retained_intron MGP_C3HHeJ_T0022893.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 167950180 168084367 + MGP_C3HHeJ_P0022893 Nme7 protein_coding protein_coding MGP_C3HHeJ_T0022894.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 167950204 167978445 + Nme7 protein_coding retained_intron MGP_C3HHeJ_T0022895.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 167955144 167992384 + MGP_C3HHeJ_P0022895 Nme7 protein_coding protein_coding MGP_C3HHeJ_T0022896.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 167989421 168026835 + Nme7 protein_coding retained_intron MGP_C3HHeJ_T0022897.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 168018456 168084309 + Nme7 protein_coding processed_transcript MGP_C3HHeJ_T0022898.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 168018456 168084365 + Nme7 protein_coding processed_transcript MGP_C3HHeJ_T0002889.1 MGP_C3HHeJ_G0002716.1 mouse_genomes_project 1 176389357 176392120 - Gm37756 antisense antisense MGP_C3HHeJ_T0012084.1 MGP_C3HHeJ_G0010188.1 mouse_genomes_project 1 110160343 110162812 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005678.1 MGP_C3HHeJ_G0004760.1 mouse_genomes_project 1 61448754 61453466 - 4930587A21Rik lincRNA lincRNA MGP_C3HHeJ_T0005985.1 MGP_C3HHeJ_G0005002.1 mouse_genomes_project 1 198252713 198253787 + 1700065J18Rik lincRNA lincRNA MGP_C3HHeJ_T0005986.1 MGP_C3HHeJ_G0005002.1 mouse_genomes_project 1 198252723 198253793 + 1700065J18Rik lincRNA lincRNA MGP_C3HHeJ_T0022551.1 MGP_C3HHeJ_G0016386.1 mouse_genomes_project 1 159430624 159519504 - MGP_C3HHeJ_P0022551 Fam163a protein_coding protein_coding MGP_C3HHeJ_T0000613.1 MGP_C3HHeJ_G0000559.1 mouse_genomes_project 1 138659583 138661836 + TEC TEC MGP_C3HHeJ_T0000455.1 MGP_C3HHeJ_G0000402.1 mouse_genomes_project 1 60174985 60176042 + TEC TEC MGP_C3HHeJ_T0099877.1 MGP_C3HHeJ_G0038071.1 mouse_genomes_project 1 114351483 114351619 + Gm22331 snoRNA snoRNA MGP_C3HHeJ_T0005591.1 MGP_C3HHeJ_G0004698.1 mouse_genomes_project 1 22619125 22620893 - Gm28237 lincRNA lincRNA MGP_C3HHeJ_T0005592.1 MGP_C3HHeJ_G0004698.1 mouse_genomes_project 1 22619912 22621075 - Gm28237 lincRNA lincRNA MGP_C3HHeJ_T0002923.1 MGP_C3HHeJ_G0002746.1 mouse_genomes_project 1 196395865 196396702 + A230020J21Rik antisense antisense MGP_C3HHeJ_T0002924.1 MGP_C3HHeJ_G0002746.1 mouse_genomes_project 1 196395866 196400345 + A230020J21Rik antisense antisense MGP_C3HHeJ_T0019279.1 MGP_C3HHeJ_G0015732.1 mouse_genomes_project 1 38108737 38165557 - MGP_C3HHeJ_P0019279 Rfx8 protein_coding protein_coding MGP_C3HHeJ_T0019280.1 MGP_C3HHeJ_G0015732.1 mouse_genomes_project 1 38124303 38135336 - Rfx8 protein_coding processed_transcript MGP_C3HHeJ_T0021130.1 MGP_C3HHeJ_G0016091.1 mouse_genomes_project 1 93797777 93802401 - MGP_C3HHeJ_P0021130 Otos protein_coding protein_coding MGP_C3HHeJ_T0021131.1 MGP_C3HHeJ_G0016091.1 mouse_genomes_project 1 93797778 93801814 - Otos protein_coding retained_intron MGP_C3HHeJ_T0000640.1 MGP_C3HHeJ_G0000585.1 mouse_genomes_project 1 149455468 149461231 - TEC TEC MGP_C3HHeJ_T0098601.1 MGP_C3HHeJ_G0036795.1 mouse_genomes_project 1 17908618 17908720 - Gm24162 snRNA snRNA MGP_C3HHeJ_T0018679.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8565947 8762813 + MGP_C3HHeJ_P0018679 A830018L16Rik protein_coding protein_coding MGP_C3HHeJ_T0018680.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8565947 9132741 + MGP_C3HHeJ_P0018680 A830018L16Rik protein_coding protein_coding MGP_C3HHeJ_T0018681.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8565954 8671955 + A830018L16Rik protein_coding processed_transcript MGP_C3HHeJ_T0018682.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8565954 8693193 + A830018L16Rik protein_coding processed_transcript MGP_C3HHeJ_T0018683.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8565954 9090174 + MGP_C3HHeJ_P0018683 A830018L16Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018684.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8566112 8760890 + MGP_C3HHeJ_P0018684 A830018L16Rik protein_coding protein_coding MGP_C3HHeJ_T0018685.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8566352 9132237 + MGP_C3HHeJ_P0018685 A830018L16Rik protein_coding protein_coding MGP_C3HHeJ_T0018686.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8566352 9132237 + MGP_C3HHeJ_P0018686 A830018L16Rik protein_coding protein_coding MGP_C3HHeJ_T0018687.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8671916 8760506 + MGP_C3HHeJ_P0018687 A830018L16Rik protein_coding protein_coding MGP_C3HHeJ_T0018688.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8739765 8757186 + A830018L16Rik protein_coding processed_transcript MGP_C3HHeJ_T0018867.1 MGP_C3HHeJ_G0015654.1 mouse_genomes_project 1 20682607 20684388 - MGP_C3HHeJ_P0018867 4933415F23Rik protein_coding protein_coding MGP_C3HHeJ_T0011807.1 MGP_C3HHeJ_G0009911.1 mouse_genomes_project 1 14144092 14144510 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023321.1 MGP_C3HHeJ_G0016545.1 mouse_genomes_project 1 176512959 176522906 - MGP_C3HHeJ_P0023321 Casq1 protein_coding protein_coding MGP_C3HHeJ_T0023322.1 MGP_C3HHeJ_G0016545.1 mouse_genomes_project 1 176512960 176517020 - Casq1 protein_coding retained_intron MGP_C3HHeJ_T0023323.1 MGP_C3HHeJ_G0016545.1 mouse_genomes_project 1 176518205 176522753 - MGP_C3HHeJ_P0023323 Casq1 protein_coding protein_coding MGP_C3HHeJ_T0022115.1 MGP_C3HHeJ_G0016304.1 mouse_genomes_project 1 138655150 138724890 + MGP_C3HHeJ_P0022115 Cacna1s protein_coding protein_coding MGP_C3HHeJ_T0022116.1 MGP_C3HHeJ_G0016304.1 mouse_genomes_project 1 138655184 138724895 + MGP_C3HHeJ_P0022116 Cacna1s protein_coding protein_coding MGP_C3HHeJ_T0022117.1 MGP_C3HHeJ_G0016304.1 mouse_genomes_project 1 138655301 138725182 + MGP_C3HHeJ_P0022117 Cacna1s protein_coding protein_coding MGP_C3HHeJ_T0022118.1 MGP_C3HHeJ_G0016304.1 mouse_genomes_project 1 138676039 138724889 + MGP_C3HHeJ_P0022118 Cacna1s protein_coding protein_coding MGP_C3HHeJ_T0022119.1 MGP_C3HHeJ_G0016304.1 mouse_genomes_project 1 138710727 138717376 + Cacna1s protein_coding retained_intron MGP_C3HHeJ_T0022120.1 MGP_C3HHeJ_G0016304.1 mouse_genomes_project 1 138722615 138724889 + Cacna1s protein_coding processed_transcript MGP_C3HHeJ_T0101563.1 MGP_C3HHeJ_G0039529.1 mouse_genomes_project 1 89048158 89048372 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0020684.1 MGP_C3HHeJ_G0015993.1 mouse_genomes_project 1 83814391 83985964 - MGP_C3HHeJ_P0020684 Sphkap protein_coding protein_coding MGP_C3HHeJ_T0020685.1 MGP_C3HHeJ_G0015993.1 mouse_genomes_project 1 83815690 83985771 - MGP_C3HHeJ_P0020685 Sphkap protein_coding unknown_likely_coding MGP_C3HHeJ_T0020686.1 MGP_C3HHeJ_G0015993.1 mouse_genomes_project 1 83815694 83839351 - MGP_C3HHeJ_P0020686 Sphkap protein_coding protein_coding MGP_C3HHeJ_T0020687.1 MGP_C3HHeJ_G0015993.1 mouse_genomes_project 1 83825326 83985929 - Sphkap protein_coding retained_intron MGP_C3HHeJ_T0020688.1 MGP_C3HHeJ_G0015993.1 mouse_genomes_project 1 83907366 83985903 - Sphkap protein_coding retained_intron MGP_C3HHeJ_T0020689.1 MGP_C3HHeJ_G0015993.1 mouse_genomes_project 1 83957837 83985929 - Sphkap protein_coding retained_intron MGP_C3HHeJ_T0000326.1 MGP_C3HHeJ_G0000276.1 mouse_genomes_project 1 734946 736580 + TEC TEC MGP_C3HHeJ_T0012204.1 MGP_C3HHeJ_G0010308.1 mouse_genomes_project 1 162847615 162848121 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000511.1 MGP_C3HHeJ_G0000458.1 mouse_genomes_project 1 84736038 84737682 - TEC TEC MGP_C3HHeJ_T0000740.1 MGP_C3HHeJ_G0000684.1 mouse_genomes_project 1 187037209 187040453 - TEC TEC MGP_C3HHeJ_T0012235.1 MGP_C3HHeJ_G0010339.1 mouse_genomes_project 1 177096048 177096479 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012097.1 MGP_C3HHeJ_G0010201.1 mouse_genomes_project 1 114289603 114290272 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005885.1 MGP_C3HHeJ_G0004924.1 mouse_genomes_project 1 163553157 163556408 - 4930562F07Rik lincRNA lincRNA MGP_C3HHeJ_T0005886.1 MGP_C3HHeJ_G0004924.1 mouse_genomes_project 1 163553157 163556341 - 4930562F07Rik lincRNA lincRNA MGP_C3HHeJ_T0005887.1 MGP_C3HHeJ_G0004924.1 mouse_genomes_project 1 163553392 163556365 - 4930562F07Rik lincRNA lincRNA MGP_C3HHeJ_T0022669.1 MGP_C3HHeJ_G0016405.1 mouse_genomes_project 1 163522264 163525711 + 4930523C07Rik protein_coding retained_intron MGP_C3HHeJ_T0022670.1 MGP_C3HHeJ_G0016405.1 mouse_genomes_project 1 163522266 163549943 + 4930523C07Rik protein_coding lincRNA MGP_C3HHeJ_T0022671.1 MGP_C3HHeJ_G0016405.1 mouse_genomes_project 1 163522266 163558630 + 4930523C07Rik protein_coding lincRNA MGP_C3HHeJ_T0022672.1 MGP_C3HHeJ_G0016405.1 mouse_genomes_project 1 163522287 163551202 + 4930523C07Rik protein_coding lincRNA MGP_C3HHeJ_T0022673.1 MGP_C3HHeJ_G0016405.1 mouse_genomes_project 1 163522329 163549912 + 4930523C07Rik protein_coding lincRNA MGP_C3HHeJ_T0022674.1 MGP_C3HHeJ_G0016405.1 mouse_genomes_project 1 163553584 163553884 + MGP_C3HHeJ_P0022674 4930523C07Rik protein_coding protein_coding MGP_C3HHeJ_T0002916.1 MGP_C3HHeJ_G0002740.1 mouse_genomes_project 1 193247362 193249778 - 9330162B11Rik antisense antisense MGP_C3HHeJ_T0005651.1 MGP_C3HHeJ_G0004739.1 mouse_genomes_project 1 50681889 50682889 - 1700072G22Rik lincRNA lincRNA MGP_C3HHeJ_T0024044.1 MGP_C3HHeJ_G0016717.1 mouse_genomes_project 1 198302853 198449513 - MGP_C3HHeJ_P0024044 Syt14 protein_coding protein_coding MGP_C3HHeJ_T0024045.1 MGP_C3HHeJ_G0016717.1 mouse_genomes_project 1 198307606 198449400 - MGP_C3HHeJ_P0024045 Syt14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024046.1 MGP_C3HHeJ_G0016717.1 mouse_genomes_project 1 198308830 198449455 - MGP_C3HHeJ_P0024046 Syt14 protein_coding protein_coding MGP_C3HHeJ_T0024047.1 MGP_C3HHeJ_G0016717.1 mouse_genomes_project 1 198343480 198449382 - Syt14 protein_coding retained_intron MGP_C3HHeJ_T0020909.1 MGP_C3HHeJ_G0016036.1 mouse_genomes_project 1 88630998 88658979 + Sag protein_coding retained_intron MGP_C3HHeJ_T0020910.1 MGP_C3HHeJ_G0016036.1 mouse_genomes_project 1 88630998 88673810 + Sag protein_coding retained_intron MGP_C3HHeJ_T0020911.1 MGP_C3HHeJ_G0016036.1 mouse_genomes_project 1 88630998 88674296 + Sag protein_coding retained_intron MGP_C3HHeJ_T0020912.1 MGP_C3HHeJ_G0016036.1 mouse_genomes_project 1 88630998 88651295 + Sag protein_coding retained_intron MGP_C3HHeJ_T0020913.1 MGP_C3HHeJ_G0016036.1 mouse_genomes_project 1 88630998 88693209 + MGP_C3HHeJ_P0020913 Sag protein_coding protein_coding MGP_C3HHeJ_T0020914.1 MGP_C3HHeJ_G0016036.1 mouse_genomes_project 1 88630998 88693344 + MGP_C3HHeJ_P0020914 Sag protein_coding protein_coding MGP_C3HHeJ_T0020915.1 MGP_C3HHeJ_G0016036.1 mouse_genomes_project 1 88645595 88658153 + Sag protein_coding processed_transcript MGP_C3HHeJ_T0020916.1 MGP_C3HHeJ_G0016036.1 mouse_genomes_project 1 88654893 88658163 + Sag protein_coding processed_transcript MGP_C3HHeJ_T0020917.1 MGP_C3HHeJ_G0016036.1 mouse_genomes_project 1 88660166 88674314 + Sag protein_coding retained_intron MGP_C3HHeJ_T0022948.1 MGP_C3HHeJ_G0016462.1 mouse_genomes_project 1 169342585 169415634 - MGP_C3HHeJ_P0022948 Rcsd1 protein_coding protein_coding MGP_C3HHeJ_T0022949.1 MGP_C3HHeJ_G0016462.1 mouse_genomes_project 1 169345016 169415596 - MGP_C3HHeJ_P0022949 Rcsd1 protein_coding protein_coding MGP_C3HHeJ_T0022950.1 MGP_C3HHeJ_G0016462.1 mouse_genomes_project 1 169366790 169416941 - MGP_C3HHeJ_P0022950 Rcsd1 protein_coding protein_coding MGP_C3HHeJ_T0022951.1 MGP_C3HHeJ_G0016462.1 mouse_genomes_project 1 169412069 169417274 - Rcsd1 protein_coding retained_intron MGP_C3HHeJ_T0022952.1 MGP_C3HHeJ_G0016462.1 mouse_genomes_project 1 169415986 169417305 - Rcsd1 protein_coding processed_transcript MGP_C3HHeJ_T0000641.1 MGP_C3HHeJ_G0000586.1 mouse_genomes_project 1 150123377 150125277 + TEC TEC MGP_C3HHeJ_T0098636.1 MGP_C3HHeJ_G0036830.1 mouse_genomes_project 1 95009496 95009598 - Gm22089 snRNA snRNA MGP_C3HHeJ_T0101603.1 MGP_C3HHeJ_G0039569.1 mouse_genomes_project 1 181489765 181489925 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099830.1 MGP_C3HHeJ_G0038024.1 mouse_genomes_project 1 18309627 18309759 - Gm24723 snoRNA snoRNA MGP_C3HHeJ_T0000502.1 MGP_C3HHeJ_G0000449.1 mouse_genomes_project 1 81195400 81197256 - TEC TEC MGP_C3HHeJ_T0009413.1 MGP_C3HHeJ_G0007546.1 mouse_genomes_project 1 74506313 74506380 - Mir1928 miRNA miRNA MGP_C3HHeJ_T0005818.1 MGP_C3HHeJ_G0004869.1 mouse_genomes_project 1 124300277 124350715 + Gm28590 lincRNA lincRNA MGP_C3HHeJ_T0012125.1 MGP_C3HHeJ_G0010229.1 mouse_genomes_project 1 125277756 125279054 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101556.1 MGP_C3HHeJ_G0039522.1 mouse_genomes_project 1 75805172 75805455 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0023324.1 MGP_C3HHeJ_G0016546.1 mouse_genomes_project 1 176527896 176564116 - MGP_C3HHeJ_P0023324 Atp1a4 protein_coding protein_coding MGP_C3HHeJ_T0023325.1 MGP_C3HHeJ_G0016546.1 mouse_genomes_project 1 176552610 176559646 - Atp1a4 protein_coding processed_transcript MGP_C3HHeJ_T0023049.1 MGP_C3HHeJ_G0016485.1 mouse_genomes_project 1 173453998 173496678 + MGP_C3HHeJ_P0023049 Rgs5 protein_coding protein_coding MGP_C3HHeJ_T0023050.1 MGP_C3HHeJ_G0016485.1 mouse_genomes_project 1 173454019 173482978 + MGP_C3HHeJ_P0023050 Rgs5 protein_coding protein_coding MGP_C3HHeJ_T0011877.1 MGP_C3HHeJ_G0009981.1 mouse_genomes_project 1 32968493 32968848 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016859.1 MGP_C3HHeJ_G0014884.1 mouse_genomes_project 1 174741836 174754595 + Gm9929 processed_transcript processed_transcript MGP_C3HHeJ_T0018847.1 MGP_C3HHeJ_G0015649.1 mouse_genomes_project 1 18868584 18884437 + MGP_C3HHeJ_P0018847 protein_coding protein_coding MGP_C3HHeJ_T0016824.1 MGP_C3HHeJ_G0014878.1 mouse_genomes_project 1 156640223 156650043 - processed_transcript processed_transcript MGP_C3HHeJ_T0016825.1 MGP_C3HHeJ_G0014878.1 mouse_genomes_project 1 156640223 156644113 - processed_transcript retained_intron MGP_C3HHeJ_T0016826.1 MGP_C3HHeJ_G0014878.1 mouse_genomes_project 1 156642621 156650184 - processed_transcript lincRNA MGP_C3HHeJ_T0021818.1 MGP_C3HHeJ_G0016242.1 mouse_genomes_project 1 134925361 134952374 + MGP_C3HHeJ_P0021818 Rbbp5 protein_coding protein_coding MGP_C3HHeJ_T0021819.1 MGP_C3HHeJ_G0016242.1 mouse_genomes_project 1 134925431 134953543 + MGP_C3HHeJ_P0021819 Rbbp5 protein_coding protein_coding MGP_C3HHeJ_T0021820.1 MGP_C3HHeJ_G0016242.1 mouse_genomes_project 1 134925487 134938477 + MGP_C3HHeJ_P0021820 Rbbp5 protein_coding protein_coding MGP_C3HHeJ_T0021821.1 MGP_C3HHeJ_G0016242.1 mouse_genomes_project 1 134925505 134951676 + MGP_C3HHeJ_P0021821 Rbbp5 protein_coding protein_coding MGP_C3HHeJ_T0021822.1 MGP_C3HHeJ_G0016242.1 mouse_genomes_project 1 134925638 134938561 + MGP_C3HHeJ_P0021822 Rbbp5 protein_coding protein_coding MGP_C3HHeJ_T0021823.1 MGP_C3HHeJ_G0016242.1 mouse_genomes_project 1 134951616 134953539 + Rbbp5 protein_coding retained_intron MGP_C3HHeJ_T0005745.1 MGP_C3HHeJ_G0004809.1 mouse_genomes_project 1 89416614 89436133 - Gm29538 lincRNA lincRNA MGP_C3HHeJ_T0020967.1 MGP_C3HHeJ_G0016054.1 mouse_genomes_project 1 89652326 89682949 - MGP_C3HHeJ_P0020967 Arl4c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020968.1 MGP_C3HHeJ_G0016054.1 mouse_genomes_project 1 89652328 89682949 - MGP_C3HHeJ_P0020968 Arl4c protein_coding protein_coding MGP_C3HHeJ_T0020969.1 MGP_C3HHeJ_G0016054.1 mouse_genomes_project 1 89679297 89683294 - MGP_C3HHeJ_P0020969 Arl4c protein_coding protein_coding MGP_C3HHeJ_T0019652.1 MGP_C3HHeJ_G0015805.1 mouse_genomes_project 1 54748541 54804281 - MGP_C3HHeJ_P0019652 Boll protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019653.1 MGP_C3HHeJ_G0015805.1 mouse_genomes_project 1 54770506 54867310 - MGP_C3HHeJ_P0019653 Boll protein_coding protein_coding MGP_C3HHeJ_T0019654.1 MGP_C3HHeJ_G0015805.1 mouse_genomes_project 1 54804171 54869295 - MGP_C3HHeJ_P0019654 Boll protein_coding protein_coding MGP_C3HHeJ_T0019655.1 MGP_C3HHeJ_G0015805.1 mouse_genomes_project 1 54804171 54869888 - MGP_C3HHeJ_P0019655 Boll protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019656.1 MGP_C3HHeJ_G0015805.1 mouse_genomes_project 1 54804171 54869888 - MGP_C3HHeJ_P0019656 Boll protein_coding protein_coding MGP_C3HHeJ_T0019657.1 MGP_C3HHeJ_G0015805.1 mouse_genomes_project 1 54852121 54870038 - MGP_C3HHeJ_P0019657 Boll protein_coding protein_coding MGP_C3HHeJ_T0019658.1 MGP_C3HHeJ_G0015805.1 mouse_genomes_project 1 54854902 54867310 - Boll protein_coding processed_transcript MGP_C3HHeJ_T0005761.1 MGP_C3HHeJ_G0004824.1 mouse_genomes_project 1 92368443 92375671 - Gm26683 lincRNA lincRNA MGP_C3HHeJ_T0099902.1 MGP_C3HHeJ_G0038096.1 mouse_genomes_project 1 164589940 164590006 + Snord78 snoRNA snoRNA MGP_C3HHeJ_T0022254.1 MGP_C3HHeJ_G0016331.1 mouse_genomes_project 1 146682017 146708456 - MGP_C3HHeJ_P0022254 Trove2 protein_coding protein_coding MGP_C3HHeJ_T0022255.1 MGP_C3HHeJ_G0016331.1 mouse_genomes_project 1 146687146 146708310 - Trove2 protein_coding retained_intron MGP_C3HHeJ_T0101105.1 MGP_C3HHeJ_G0039286.1 mouse_genomes_project 1 190667714 190679856 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101106.1 MGP_C3HHeJ_G0039286.1 mouse_genomes_project 1 190679084 190679714 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101104.1 MGP_C3HHeJ_G0039285.1 mouse_genomes_project 1 188308206 188308890 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0098320.1 MGP_C3HHeJ_G0036531.1 mouse_genomes_project 1 83271734 83273669 + sense_intronic sense_intronic MGP_C3HHeJ_T0002737.1 MGP_C3HHeJ_G0002602.1 mouse_genomes_project 1 50437073 50550376 - 9330175M20Rik antisense antisense MGP_C3HHeJ_T0002890.1 MGP_C3HHeJ_G0002717.1 mouse_genomes_project 1 176516085 176516745 + Gm17224 antisense antisense MGP_C3HHeJ_T0000583.1 MGP_C3HHeJ_G0000530.1 mouse_genomes_project 1 130336333 130340216 - TEC TEC MGP_C3HHeJ_T0002758.1 MGP_C3HHeJ_G0002618.1 mouse_genomes_project 1 66299666 66306156 - Gm10558 antisense antisense MGP_C3HHeJ_T0002860.1 MGP_C3HHeJ_G0002695.1 mouse_genomes_project 1 164593252 164594039 + Gm37634 antisense antisense MGP_C3HHeJ_T0012094.1 MGP_C3HHeJ_G0010198.1 mouse_genomes_project 1 113919552 113923767 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005639.1 MGP_C3HHeJ_G0004728.1 mouse_genomes_project 1 41358525 41360695 + Dalir lincRNA lincRNA MGP_C3HHeJ_T0019988.1 MGP_C3HHeJ_G0015862.1 mouse_genomes_project 1 63654545 63677996 + MGP_C3HHeJ_P0019988 Fastkd2 protein_coding protein_coding MGP_C3HHeJ_T0019989.1 MGP_C3HHeJ_G0015862.1 mouse_genomes_project 1 63654572 63660445 + Fastkd2 protein_coding retained_intron MGP_C3HHeJ_T0019990.1 MGP_C3HHeJ_G0015862.1 mouse_genomes_project 1 63654574 63675879 + Fastkd2 protein_coding retained_intron MGP_C3HHeJ_T0019991.1 MGP_C3HHeJ_G0015862.1 mouse_genomes_project 1 63660311 63671400 + Fastkd2 protein_coding processed_transcript MGP_C3HHeJ_T0019992.1 MGP_C3HHeJ_G0015862.1 mouse_genomes_project 1 63671363 63673618 + Fastkd2 protein_coding retained_intron MGP_C3HHeJ_T0019993.1 MGP_C3HHeJ_G0015862.1 mouse_genomes_project 1 63674562 63675806 + Fastkd2 protein_coding processed_transcript MGP_C3HHeJ_T0000411.1 MGP_C3HHeJ_G0000358.1 mouse_genomes_project 1 32450289 32451536 - TEC TEC MGP_C3HHeJ_T0012107.1 MGP_C3HHeJ_G0010211.1 mouse_genomes_project 1 120473171 120474159 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019800.1 MGP_C3HHeJ_G0015831.1 mouse_genomes_project 1 58787429 58833712 - MGP_C3HHeJ_P0019800 Als2cr11 protein_coding protein_coding MGP_C3HHeJ_T0019801.1 MGP_C3HHeJ_G0015831.1 mouse_genomes_project 1 58806512 58821660 - Als2cr11 protein_coding processed_transcript MGP_C3HHeJ_T0009417.1 MGP_C3HHeJ_G0007550.1 mouse_genomes_project 1 75494715 75494831 - Gm27943 miRNA miRNA MGP_C3HHeJ_T0000759.1 MGP_C3HHeJ_G0000702.1 mouse_genomes_project 1 193406198 193408635 + TEC TEC MGP_C3HHeJ_T0018840.1 MGP_C3HHeJ_G0015647.1 mouse_genomes_project 1 18702903 18715975 + MGP_C3HHeJ_P0018840 Tmem14a protein_coding protein_coding MGP_C3HHeJ_T0018841.1 MGP_C3HHeJ_G0015647.1 mouse_genomes_project 1 18702990 18715972 + MGP_C3HHeJ_P0018841 Tmem14a protein_coding protein_coding MGP_C3HHeJ_T0098666.1 MGP_C3HHeJ_G0036860.1 mouse_genomes_project 1 173618544 173618651 - Gm22114 snRNA snRNA MGP_C3HHeJ_T0000609.1 MGP_C3HHeJ_G0000555.1 mouse_genomes_project 1 137368024 137375634 - TEC TEC MGP_C3HHeJ_T0005610.1 MGP_C3HHeJ_G0004714.1 mouse_genomes_project 1 34384638 34393760 + Gm33280 lincRNA lincRNA MGP_C3HHeJ_T0020825.1 MGP_C3HHeJ_G0016021.1 mouse_genomes_project 1 87903527 87907132 - MGP_C3HHeJ_P0020825 Alpi protein_coding protein_coding MGP_C3HHeJ_T0099858.1 MGP_C3HHeJ_G0038052.1 mouse_genomes_project 1 66852624 66852754 + Gm25832 snoRNA snoRNA MGP_C3HHeJ_T0005700.1 MGP_C3HHeJ_G0004776.1 mouse_genomes_project 1 72115740 72144010 - Gm28818 lincRNA lincRNA MGP_C3HHeJ_T0005701.1 MGP_C3HHeJ_G0004776.1 mouse_genomes_project 1 72119678 72121870 - Gm28818 lincRNA lincRNA MGP_C3HHeJ_T0000635.1 MGP_C3HHeJ_G0000580.1 mouse_genomes_project 1 144237136 144237582 + TEC TEC MGP_C3HHeJ_T0000469.1 MGP_C3HHeJ_G0000416.1 mouse_genomes_project 1 66678565 66680313 - TEC TEC MGP_C3HHeJ_T0018948.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31877491 31882414 + Rab23 protein_coding processed_transcript MGP_C3HHeJ_T0018949.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31877491 31885468 + Rab23 protein_coding retained_intron MGP_C3HHeJ_T0018950.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31877499 31901581 + MGP_C3HHeJ_P0018950 Rab23 protein_coding protein_coding MGP_C3HHeJ_T0018951.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31877513 31901574 + MGP_C3HHeJ_P0018951 Rab23 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018952.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31877514 31884053 + Rab23 protein_coding retained_intron MGP_C3HHeJ_T0018953.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31877742 31894459 + Rab23 protein_coding retained_intron MGP_C3HHeJ_T0018954.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31878011 31901578 + MGP_C3HHeJ_P0018954 Rab23 protein_coding protein_coding MGP_C3HHeJ_T0018955.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31893632 31899728 + Rab23 protein_coding retained_intron MGP_C3HHeJ_T0018956.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31895682 31898387 + Rab23 protein_coding retained_intron MGP_C3HHeJ_T0018957.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31897153 31899789 + Rab23 protein_coding retained_intron MGP_C3HHeJ_T0000487.1 MGP_C3HHeJ_G0000434.1 mouse_genomes_project 1 74596097 74596416 - TEC TEC MGP_C3HHeJ_T0000547.1 MGP_C3HHeJ_G0000494.1 mouse_genomes_project 1 105276324 105279205 + TEC TEC MGP_C3HHeJ_T0012022.1 MGP_C3HHeJ_G0010126.1 mouse_genomes_project 1 82306152 82306858 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018525.1 MGP_C3HHeJ_G0015587.1 mouse_genomes_project 1 2159079 2248151 + MGP_C3HHeJ_P0018525 Atp6v1h protein_coding protein_coding MGP_C3HHeJ_T0018526.1 MGP_C3HHeJ_G0015587.1 mouse_genomes_project 1 2172678 2248340 + MGP_C3HHeJ_P0018526 Atp6v1h protein_coding protein_coding MGP_C3HHeJ_T0018527.1 MGP_C3HHeJ_G0015587.1 mouse_genomes_project 1 2172708 2185372 + MGP_C3HHeJ_P0018527 Atp6v1h protein_coding protein_coding MGP_C3HHeJ_T0018528.1 MGP_C3HHeJ_G0015587.1 mouse_genomes_project 1 2172722 2230854 + Atp6v1h protein_coding retained_intron MGP_C3HHeJ_T0018529.1 MGP_C3HHeJ_G0015587.1 mouse_genomes_project 1 2172730 2176386 + Atp6v1h protein_coding retained_intron MGP_C3HHeJ_T0018530.1 MGP_C3HHeJ_G0015587.1 mouse_genomes_project 1 2172730 2185303 + MGP_C3HHeJ_P0018530 Atp6v1h protein_coding protein_coding MGP_C3HHeJ_T0018531.1 MGP_C3HHeJ_G0015587.1 mouse_genomes_project 1 2172752 2248230 + MGP_C3HHeJ_P0018531 Atp6v1h protein_coding protein_coding MGP_C3HHeJ_T0018532.1 MGP_C3HHeJ_G0015587.1 mouse_genomes_project 1 2172762 2189424 + Atp6v1h protein_coding retained_intron MGP_C3HHeJ_T0002749.1 MGP_C3HHeJ_G0002611.1 mouse_genomes_project 1 59290846 59306765 - Gm28411 antisense antisense MGP_C3HHeJ_T0002751.1 MGP_C3HHeJ_G0002611.1 mouse_genomes_project 1 59300251 59307498 - Gm28411 antisense antisense MGP_C3HHeJ_T0021735.1 MGP_C3HHeJ_G0016223.1 mouse_genomes_project 1 133925811 133937782 + MGP_C3HHeJ_P0021735 Fam72a protein_coding protein_coding MGP_C3HHeJ_T0018493.1 MGP_C3HHeJ_G0015581.1 mouse_genomes_project 1 1555312 1560792 - MGP_C3HHeJ_P0018493 Sox17 protein_coding protein_coding MGP_C3HHeJ_T0018494.1 MGP_C3HHeJ_G0015581.1 mouse_genomes_project 1 1555631 1561136 - MGP_C3HHeJ_P0018494 Sox17 protein_coding protein_coding MGP_C3HHeJ_T0018495.1 MGP_C3HHeJ_G0015581.1 mouse_genomes_project 1 1555771 1561733 - MGP_C3HHeJ_P0018495 Sox17 protein_coding protein_coding MGP_C3HHeJ_T0018496.1 MGP_C3HHeJ_G0015581.1 mouse_genomes_project 1 1556094 1560742 - MGP_C3HHeJ_P0018496 Sox17 protein_coding protein_coding MGP_C3HHeJ_T0018497.1 MGP_C3HHeJ_G0015581.1 mouse_genomes_project 1 1556838 1557986 - Sox17 protein_coding retained_intron MGP_C3HHeJ_T0018498.1 MGP_C3HHeJ_G0015581.1 mouse_genomes_project 1 1556839 1560709 - MGP_C3HHeJ_P0018498 Sox17 protein_coding protein_coding MGP_C3HHeJ_T0018499.1 MGP_C3HHeJ_G0015581.1 mouse_genomes_project 1 1556846 1558117 - MGP_C3HHeJ_P0018499 Sox17 protein_coding protein_coding MGP_C3HHeJ_T0018500.1 MGP_C3HHeJ_G0015581.1 mouse_genomes_project 1 1556848 1560775 - MGP_C3HHeJ_P0018500 Sox17 protein_coding protein_coding MGP_C3HHeJ_T0002703.1 MGP_C3HHeJ_G0002574.1 mouse_genomes_project 1 17822302 17857550 + 4930486I03Rik antisense antisense MGP_C3HHeJ_T0000658.1 MGP_C3HHeJ_G0000603.1 mouse_genomes_project 1 159141270 159141505 + TEC TEC MGP_C3HHeJ_T0002933.1 MGP_C3HHeJ_G0002750.1 mouse_genomes_project 1 197409728 197414061 - Gm26670 antisense antisense MGP_C3HHeJ_T0023133.1 MGP_C3HHeJ_G0016508.1 mouse_genomes_project 1 175084973 175107944 - MGP_C3HHeJ_P0023133 Pcp4l1 protein_coding protein_coding MGP_C3HHeJ_T0019336.1 MGP_C3HHeJ_G0015744.1 mouse_genomes_project 1 39291304 39346579 + MGP_C3HHeJ_P0019336 Tmem182 protein_coding protein_coding MGP_C3HHeJ_T0005712.1 MGP_C3HHeJ_G0004784.1 mouse_genomes_project 1 73804632 73808150 - C530043A13Rik lincRNA lincRNA MGP_C3HHeJ_T0005713.1 MGP_C3HHeJ_G0004784.1 mouse_genomes_project 1 73804634 73807983 - C530043A13Rik lincRNA lincRNA MGP_C3HHeJ_T0005714.1 MGP_C3HHeJ_G0004784.1 mouse_genomes_project 1 73805755 73812312 - C530043A13Rik lincRNA lincRNA MGP_C3HHeJ_T0021513.1 MGP_C3HHeJ_G0016174.1 mouse_genomes_project 1 122225258 122302838 - MGP_C3HHeJ_P0021513 Steap3 protein_coding protein_coding MGP_C3HHeJ_T0021514.1 MGP_C3HHeJ_G0016174.1 mouse_genomes_project 1 122258617 122308666 - MGP_C3HHeJ_P0021514 Steap3 protein_coding protein_coding MGP_C3HHeJ_T0021515.1 MGP_C3HHeJ_G0016174.1 mouse_genomes_project 1 122260879 122308005 - MGP_C3HHeJ_P0021515 Steap3 protein_coding protein_coding MGP_C3HHeJ_T0021516.1 MGP_C3HHeJ_G0016174.1 mouse_genomes_project 1 122261898 122307812 - MGP_C3HHeJ_P0021516 Steap3 protein_coding protein_coding MGP_C3HHeJ_T0000562.1 MGP_C3HHeJ_G0000509.1 mouse_genomes_project 1 123349209 123349885 - TEC TEC MGP_C3HHeJ_T0012072.1 MGP_C3HHeJ_G0010176.1 mouse_genomes_project 1 106070928 106071404 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000703.1 MGP_C3HHeJ_G0000648.1 mouse_genomes_project 1 169557814 169558376 - TEC TEC MGP_C3HHeJ_T0012218.1 MGP_C3HHeJ_G0010322.1 mouse_genomes_project 1 169442840 169443902 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012102.1 MGP_C3HHeJ_G0010206.1 mouse_genomes_project 1 117141482 117142056 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002864.1 MGP_C3HHeJ_G0002698.1 mouse_genomes_project 1 165597761 165609247 + 2810442N19Rik antisense antisense MGP_C3HHeJ_T0002865.1 MGP_C3HHeJ_G0002698.1 mouse_genomes_project 1 165597964 165609256 + 2810442N19Rik antisense antisense MGP_C3HHeJ_T0012160.1 MGP_C3HHeJ_G0010264.1 mouse_genomes_project 1 145378925 145379540 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005577.1 MGP_C3HHeJ_G0004684.1 mouse_genomes_project 1 9868221 9869074 - Gm29663 lincRNA lincRNA MGP_C3HHeJ_T0000634.1 MGP_C3HHeJ_G0000579.1 mouse_genomes_project 1 143141759 143145125 + TEC TEC MGP_C3HHeJ_T0000638.1 MGP_C3HHeJ_G0000583.1 mouse_genomes_project 1 145684679 145684813 + TEC TEC MGP_C3HHeJ_T0012077.1 MGP_C3HHeJ_G0010181.1 mouse_genomes_project 1 107255986 107256603 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005906.1 MGP_C3HHeJ_G0004939.1 mouse_genomes_project 1 169429970 169431192 + Gm37073 lincRNA lincRNA MGP_C3HHeJ_T0000756.1 MGP_C3HHeJ_G0000699.1 mouse_genomes_project 1 192296010 192298962 - TEC TEC MGP_C3HHeJ_T0021417.1 MGP_C3HHeJ_G0016157.1 mouse_genomes_project 1 119985662 120007365 + MGP_C3HHeJ_P0021417 protein_coding protein_coding MGP_C3HHeJ_T0020460.1 MGP_C3HHeJ_G0015951.1 mouse_genomes_project 1 75532706 75550867 - MGP_C3HHeJ_P0020460 Ptprn protein_coding protein_coding MGP_C3HHeJ_T0020461.1 MGP_C3HHeJ_G0015951.1 mouse_genomes_project 1 75542490 75543630 - Ptprn protein_coding retained_intron MGP_C3HHeJ_T0020462.1 MGP_C3HHeJ_G0015951.1 mouse_genomes_project 1 75544123 75550547 - MGP_C3HHeJ_P0020462 Ptprn protein_coding protein_coding MGP_C3HHeJ_T0020463.1 MGP_C3HHeJ_G0015951.1 mouse_genomes_project 1 75544123 75550704 - MGP_C3HHeJ_P0020463 Ptprn protein_coding protein_coding MGP_C3HHeJ_T0020464.1 MGP_C3HHeJ_G0015951.1 mouse_genomes_project 1 75544191 75551156 - MGP_C3HHeJ_P0020464 Ptprn protein_coding protein_coding MGP_C3HHeJ_T0020465.1 MGP_C3HHeJ_G0015951.1 mouse_genomes_project 1 75544215 75550862 - Ptprn protein_coding processed_transcript MGP_C3HHeJ_T0023767.1 MGP_C3HHeJ_G0016662.1 mouse_genomes_project 1 188378878 188399688 - MGP_C3HHeJ_P0023767 Brox protein_coding protein_coding MGP_C3HHeJ_T0023768.1 MGP_C3HHeJ_G0016662.1 mouse_genomes_project 1 188378880 188399952 - MGP_C3HHeJ_P0023768 Brox protein_coding protein_coding MGP_C3HHeJ_T0023769.1 MGP_C3HHeJ_G0016662.1 mouse_genomes_project 1 188379590 188399965 - MGP_C3HHeJ_P0023769 Brox protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023770.1 MGP_C3HHeJ_G0016662.1 mouse_genomes_project 1 188386485 188388899 - Brox protein_coding retained_intron MGP_C3HHeJ_T0023771.1 MGP_C3HHeJ_G0016662.1 mouse_genomes_project 1 188388842 188395422 - Brox protein_coding retained_intron MGP_C3HHeJ_T0023772.1 MGP_C3HHeJ_G0016662.1 mouse_genomes_project 1 188388897 188399924 - MGP_C3HHeJ_P0023772 Brox protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023773.1 MGP_C3HHeJ_G0016662.1 mouse_genomes_project 1 188390457 188394989 - Brox protein_coding retained_intron MGP_C3HHeJ_T0023774.1 MGP_C3HHeJ_G0016662.1 mouse_genomes_project 1 188393559 188399952 - Brox protein_coding processed_transcript MGP_C3HHeJ_T0023775.1 MGP_C3HHeJ_G0016662.1 mouse_genomes_project 1 188394653 188398569 - MGP_C3HHeJ_P0023775 Brox protein_coding protein_coding MGP_C3HHeJ_T0000551.1 MGP_C3HHeJ_G0000498.1 mouse_genomes_project 1 107543811 107547160 - TEC TEC MGP_C3HHeJ_T0019033.1 MGP_C3HHeJ_G0015687.1 mouse_genomes_project 1 33069422 33093528 + MGP_C3HHeJ_P0019033 Plekhb2 protein_coding protein_coding MGP_C3HHeJ_T0019034.1 MGP_C3HHeJ_G0015687.1 mouse_genomes_project 1 33069438 33099153 + MGP_C3HHeJ_P0019034 Plekhb2 protein_coding protein_coding MGP_C3HHeJ_T0019035.1 MGP_C3HHeJ_G0015687.1 mouse_genomes_project 1 33071456 33083059 + MGP_C3HHeJ_P0019035 Plekhb2 protein_coding protein_coding MGP_C3HHeJ_T0019036.1 MGP_C3HHeJ_G0015687.1 mouse_genomes_project 1 33097227 33099150 + Plekhb2 protein_coding processed_transcript MGP_C3HHeJ_T0002788.1 MGP_C3HHeJ_G0002640.1 mouse_genomes_project 1 93715638 93716014 - 1700054K02Rik antisense antisense MGP_C3HHeJ_T0005683.1 MGP_C3HHeJ_G0004763.1 mouse_genomes_project 1 62975755 62986078 + Gm20342 lincRNA lincRNA MGP_C3HHeJ_T0019920.1 MGP_C3HHeJ_G0015849.1 mouse_genomes_project 1 60535150 60575364 + Cd28 protein_coding processed_transcript MGP_C3HHeJ_T0019921.1 MGP_C3HHeJ_G0015849.1 mouse_genomes_project 1 60558515 60585552 + MGP_C3HHeJ_P0019921 Cd28 protein_coding protein_coding MGP_C3HHeJ_T0019922.1 MGP_C3HHeJ_G0015849.1 mouse_genomes_project 1 60558559 60576827 + Cd28 protein_coding retained_intron MGP_C3HHeJ_T0018716.1 MGP_C3HHeJ_G0015614.1 mouse_genomes_project 1 10788032 10817253 - MGP_C3HHeJ_P0018716 Tram1 protein_coding protein_coding MGP_C3HHeJ_T0018717.1 MGP_C3HHeJ_G0015614.1 mouse_genomes_project 1 10802495 10806148 - Tram1 protein_coding retained_intron MGP_C3HHeJ_T0018718.1 MGP_C3HHeJ_G0015614.1 mouse_genomes_project 1 10804469 10817218 - MGP_C3HHeJ_P0018718 Tram1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022841.1 MGP_C3HHeJ_G0016436.1 mouse_genomes_project 1 166849767 166917566 - MGP_C3HHeJ_P0022841 Prrx1 protein_coding protein_coding MGP_C3HHeJ_T0022842.1 MGP_C3HHeJ_G0016436.1 mouse_genomes_project 1 166849767 166917528 - MGP_C3HHeJ_P0022842 Prrx1 protein_coding protein_coding MGP_C3HHeJ_T0022843.1 MGP_C3HHeJ_G0016436.1 mouse_genomes_project 1 166852229 166893716 - Prrx1 protein_coding processed_transcript MGP_C3HHeJ_T0022844.1 MGP_C3HHeJ_G0016436.1 mouse_genomes_project 1 166857500 166917524 - MGP_C3HHeJ_P0022844 Prrx1 protein_coding protein_coding MGP_C3HHeJ_T0022845.1 MGP_C3HHeJ_G0016436.1 mouse_genomes_project 1 166887300 166917527 - Prrx1 protein_coding retained_intron MGP_C3HHeJ_T0005748.1 MGP_C3HHeJ_G0004812.1 mouse_genomes_project 1 89631089 89632883 + Gm29336 lincRNA lincRNA MGP_C3HHeJ_T0022725.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164623111 164641218 + MGP_C3HHeJ_P0022725 Cenpl protein_coding protein_coding MGP_C3HHeJ_T0022726.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164623165 164640836 + MGP_C3HHeJ_P0022726 Cenpl protein_coding protein_coding MGP_C3HHeJ_T0022727.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164623165 164640836 + MGP_C3HHeJ_P0022727 Cenpl protein_coding protein_coding MGP_C3HHeJ_T0022728.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164623290 164640822 + MGP_C3HHeJ_P0022728 Cenpl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022729.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164623348 164640822 + MGP_C3HHeJ_P0022729 Cenpl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022730.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164623364 164641222 + MGP_C3HHeJ_P0022730 Cenpl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022731.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164623383 164636711 + MGP_C3HHeJ_P0022731 Cenpl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022732.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164623414 164640836 + MGP_C3HHeJ_P0022732 Cenpl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022733.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164624802 164625402 + Cenpl protein_coding processed_transcript MGP_C3HHeJ_T0022734.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164628277 164636622 + Cenpl protein_coding processed_transcript MGP_C3HHeJ_T0000587.1 MGP_C3HHeJ_G0000534.1 mouse_genomes_project 1 131574080 131576567 + TEC TEC MGP_C3HHeJ_T0012013.1 MGP_C3HHeJ_G0010117.1 mouse_genomes_project 1 76424250 76424650 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022391.1 MGP_C3HHeJ_G0016356.1 mouse_genomes_project 1 155955676 155962650 + MGP_C3HHeJ_P0022391 Apobec4 protein_coding protein_coding MGP_C3HHeJ_T0011864.1 MGP_C3HHeJ_G0009968.1 mouse_genomes_project 1 31456472 31457385 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000752.1 MGP_C3HHeJ_G0000695.1 mouse_genomes_project 1 191371701 191372189 + TEC TEC MGP_C3HHeJ_T0098600.1 MGP_C3HHeJ_G0036794.1 mouse_genomes_project 1 10573542 10573654 - Gm23169 snRNA snRNA MGP_C3HHeJ_T0011872.1 MGP_C3HHeJ_G0009976.1 mouse_genomes_project 1 32828062 32828485 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099819.1 MGP_C3HHeJ_G0038013.1 mouse_genomes_project 1 4403534 4403664 + Gm23274 snoRNA snoRNA MGP_C3HHeJ_T0000398.1 MGP_C3HHeJ_G0000346.1 mouse_genomes_project 1 30593469 30595014 + TEC TEC MGP_C3HHeJ_T0021056.1 MGP_C3HHeJ_G0016071.1 mouse_genomes_project 1 92395340 92424001 + MGP_C3HHeJ_P0021056 Espnl protein_coding protein_coding MGP_C3HHeJ_T0021057.1 MGP_C3HHeJ_G0016071.1 mouse_genomes_project 1 92395398 92421579 + MGP_C3HHeJ_P0021057 Espnl protein_coding protein_coding MGP_C3HHeJ_T0020521.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75770225 75778144 - Obsl1 protein_coding retained_intron MGP_C3HHeJ_T0020526.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75776735 75797458 - MGP_C3HHeJ_P0020526 Obsl1 protein_coding protein_coding MGP_C3HHeJ_T0020527.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75777761 75778713 - Obsl1 protein_coding retained_intron MGP_C3HHeJ_T0020528.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75778133 75778989 - Obsl1 protein_coding retained_intron MGP_C3HHeJ_T0020529.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75781444 75796738 - MGP_C3HHeJ_P0020529 Obsl1 protein_coding protein_coding MGP_C3HHeJ_T0020530.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75781759 75783978 - MGP_C3HHeJ_P0020530 Obsl1 protein_coding protein_coding MGP_C3HHeJ_T0020531.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75781879 75782722 - Obsl1 protein_coding retained_intron MGP_C3HHeJ_T0020532.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75782268 75783542 - Obsl1 protein_coding processed_transcript MGP_C3HHeJ_T0020533.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75783305 75783952 - Obsl1 protein_coding retained_intron MGP_C3HHeJ_T0020534.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75787442 75797458 - MGP_C3HHeJ_P0020534 Obsl1 protein_coding protein_coding MGP_C3HHeJ_T0020535.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75787443 75794777 - Obsl1 protein_coding retained_intron MGP_C3HHeJ_T0020536.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75792777 75797549 - Obsl1 protein_coding retained_intron MGP_C3HHeJ_T0020537.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75792777 75797458 - Obsl1 protein_coding retained_intron MGP_C3HHeJ_T0019278.1 MGP_C3HHeJ_G0015731.1 mouse_genomes_project 1 38060882 38094272 - MGP_C3HHeJ_P0019278 Creg2 protein_coding protein_coding MGP_C3HHeJ_T0101609.1 MGP_C3HHeJ_G0039575.1 mouse_genomes_project 1 186486029 186486707 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0021656.1 MGP_C3HHeJ_G0016203.1 mouse_genomes_project 1 132804020 132838980 - MGP_C3HHeJ_P0021656 Cd55 protein_coding protein_coding MGP_C3HHeJ_T0021657.1 MGP_C3HHeJ_G0016203.1 mouse_genomes_project 1 132805147 132814007 - Cd55 protein_coding retained_intron MGP_C3HHeJ_T0021658.1 MGP_C3HHeJ_G0016203.1 mouse_genomes_project 1 132811391 132817196 - MGP_C3HHeJ_P0021658 Cd55 protein_coding protein_coding MGP_C3HHeJ_T0020881.1 MGP_C3HHeJ_G0016033.1 mouse_genomes_project 1 88326048 88418330 + MGP_C3HHeJ_P0020881 Neu2 protein_coding protein_coding MGP_C3HHeJ_T0020882.1 MGP_C3HHeJ_G0016033.1 mouse_genomes_project 1 88395733 88419498 + MGP_C3HHeJ_P0020882 Neu2 protein_coding protein_coding MGP_C3HHeJ_T0020883.1 MGP_C3HHeJ_G0016033.1 mouse_genomes_project 1 88395733 88419481 + MGP_C3HHeJ_P0020883 Neu2 protein_coding protein_coding MGP_C3HHeJ_T0020884.1 MGP_C3HHeJ_G0016033.1 mouse_genomes_project 1 88395752 88418225 + MGP_C3HHeJ_P0020884 Neu2 protein_coding protein_coding MGP_C3HHeJ_T0020885.1 MGP_C3HHeJ_G0016033.1 mouse_genomes_project 1 88405725 88419505 + MGP_C3HHeJ_P0020885 Neu2 protein_coding protein_coding MGP_C3HHeJ_T0020886.1 MGP_C3HHeJ_G0016033.1 mouse_genomes_project 1 88416209 88419481 + MGP_C3HHeJ_P0020886 Neu2 protein_coding protein_coding MGP_C3HHeJ_T0020887.1 MGP_C3HHeJ_G0016033.1 mouse_genomes_project 1 88416209 88419487 + MGP_C3HHeJ_P0020887 Neu2 protein_coding protein_coding MGP_C3HHeJ_T0011983.1 MGP_C3HHeJ_G0010087.1 mouse_genomes_project 1 63763570 63764322 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005686.1 MGP_C3HHeJ_G0004765.1 mouse_genomes_project 1 63876950 63881220 + Gm13749 lincRNA lincRNA MGP_C3HHeJ_T0005867.1 MGP_C3HHeJ_G0004911.1 mouse_genomes_project 1 157234170 157236235 + Gm29290 lincRNA lincRNA MGP_C3HHeJ_T0023433.1 MGP_C3HHeJ_G0016590.1 mouse_genomes_project 1 178835142 178836230 - MGP_C3HHeJ_P0023433 Olfr419 protein_coding protein_coding MGP_C3HHeJ_T0011855.1 MGP_C3HHeJ_G0009959.1 mouse_genomes_project 1 29322924 29323488 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005640.1 MGP_C3HHeJ_G0004729.1 mouse_genomes_project 1 41874100 41929090 - Gm29040 lincRNA lincRNA MGP_C3HHeJ_T0012104.1 MGP_C3HHeJ_G0010208.1 mouse_genomes_project 1 119405893 119407169 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009452.1 MGP_C3HHeJ_G0007585.1 mouse_genomes_project 1 158655905 158656029 + Gm22569 miRNA miRNA MGP_C3HHeJ_T0012068.1 MGP_C3HHeJ_G0010172.1 mouse_genomes_project 1 103249848 103250578 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020059.1 MGP_C3HHeJ_G0015880.1 mouse_genomes_project 1 65916488 65918303 + MGP_C3HHeJ_P0020059 protein_coding protein_coding MGP_C3HHeJ_T0020060.1 MGP_C3HHeJ_G0015880.1 mouse_genomes_project 1 65916506 65918302 + MGP_C3HHeJ_P0020060 protein_coding protein_coding MGP_C3HHeJ_T0022350.1 MGP_C3HHeJ_G0016348.1 mouse_genomes_project 1 154604192 154619979 + Trmt1l protein_coding retained_intron MGP_C3HHeJ_T0022351.1 MGP_C3HHeJ_G0016348.1 mouse_genomes_project 1 154604192 154635115 + MGP_C3HHeJ_P0022351 Trmt1l protein_coding protein_coding MGP_C3HHeJ_T0022352.1 MGP_C3HHeJ_G0016348.1 mouse_genomes_project 1 154604287 154612338 + Trmt1l protein_coding retained_intron MGP_C3HHeJ_T0022353.1 MGP_C3HHeJ_G0016348.1 mouse_genomes_project 1 154604292 154627067 + Trmt1l protein_coding retained_intron MGP_C3HHeJ_T0022354.1 MGP_C3HHeJ_G0016348.1 mouse_genomes_project 1 154604298 154606286 + Trmt1l protein_coding retained_intron MGP_C3HHeJ_T0022355.1 MGP_C3HHeJ_G0016348.1 mouse_genomes_project 1 154604317 154612338 + Trmt1l protein_coding retained_intron MGP_C3HHeJ_T0022356.1 MGP_C3HHeJ_G0016348.1 mouse_genomes_project 1 154604356 154635115 + MGP_C3HHeJ_P0022356 Trmt1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000413.1 MGP_C3HHeJ_G0000360.1 mouse_genomes_project 1 34281172 34282545 - TEC TEC MGP_C3HHeJ_T0002855.1 MGP_C3HHeJ_G0002690.1 mouse_genomes_project 1 160887581 160906058 - Gm15486 antisense antisense MGP_C3HHeJ_T0011800.1 MGP_C3HHeJ_G0009904.1 mouse_genomes_project 1 10285525 10285846 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009418.1 MGP_C3HHeJ_G0007551.1 mouse_genomes_project 1 76826747 76826831 + Mir6343 miRNA miRNA MGP_C3HHeJ_T0022651.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162696974 162719331 + MGP_C3HHeJ_P0022651 Rfwd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022652.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162696974 162819980 + MGP_C3HHeJ_P0022652 Rfwd2 protein_coding protein_coding MGP_C3HHeJ_T0022653.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162697264 162758747 + MGP_C3HHeJ_P0022653 Rfwd2 protein_coding protein_coding MGP_C3HHeJ_T0022654.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162697306 162719354 + MGP_C3HHeJ_P0022654 Rfwd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022655.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162708039 162736246 + Rfwd2 protein_coding retained_intron MGP_C3HHeJ_T0022656.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162718459 162777145 + MGP_C3HHeJ_P0022656 Rfwd2 protein_coding protein_coding MGP_C3HHeJ_T0022657.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162727903 162779036 + MGP_C3HHeJ_P0022657 Rfwd2 protein_coding protein_coding MGP_C3HHeJ_T0022658.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162735993 162743806 + Rfwd2 protein_coding retained_intron MGP_C3HHeJ_T0022659.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162777183 162779657 + Rfwd2 protein_coding retained_intron MGP_C3HHeJ_T0022660.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162777194 162796068 + MGP_C3HHeJ_P0022660 Rfwd2 protein_coding protein_coding MGP_C3HHeJ_T0022661.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162778981 162796149 + Rfwd2 protein_coding retained_intron MGP_C3HHeJ_T0022662.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162792027 162796997 + Rfwd2 protein_coding retained_intron MGP_C3HHeJ_T0022663.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162814715 162817407 + Rfwd2 protein_coding retained_intron MGP_C3HHeJ_T0005702.1 MGP_C3HHeJ_G0004777.1 mouse_genomes_project 1 72187106 72234042 - 4933417E11Rik lincRNA lincRNA MGP_C3HHeJ_T0000693.1 MGP_C3HHeJ_G0000638.1 mouse_genomes_project 1 165390354 165395028 - TEC TEC MGP_C3HHeJ_T0022000.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137299732 137511649 - MGP_C3HHeJ_P0022000 Ppp1r12b protein_coding protein_coding MGP_C3HHeJ_T0022001.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137300637 137305456 - Ppp1r12b protein_coding processed_transcript MGP_C3HHeJ_T0022002.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137304167 137394684 - Ppp1r12b protein_coding processed_transcript MGP_C3HHeJ_T0022003.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137305071 137511560 - MGP_C3HHeJ_P0022003 Ppp1r12b protein_coding protein_coding MGP_C3HHeJ_T0022004.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137305511 137511491 - MGP_C3HHeJ_P0022004 Ppp1r12b protein_coding unknown_likely_coding MGP_C3HHeJ_T0022005.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137311011 137511649 - MGP_C3HHeJ_P0022005 Ppp1r12b protein_coding protein_coding MGP_C3HHeJ_T0022006.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137324983 137351908 - Ppp1r12b protein_coding retained_intron MGP_C3HHeJ_T0022007.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137327503 137329884 - Ppp1r12b protein_coding retained_intron MGP_C3HHeJ_T0022008.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137382309 137384068 - Ppp1r12b protein_coding processed_transcript MGP_C3HHeJ_T0022009.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137382312 137511637 - Ppp1r12b protein_coding retained_intron MGP_C3HHeJ_T0022010.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137502525 137511651 - MGP_C3HHeJ_P0022010 Ppp1r12b protein_coding protein_coding MGP_C3HHeJ_T0018916.1 MGP_C3HHeJ_G0015665.1 mouse_genomes_project 1 26644972 26649131 - MGP_C3HHeJ_P0018916 Gm597 protein_coding protein_coding MGP_C3HHeJ_T0024011.1 MGP_C3HHeJ_G0016712.1 mouse_genomes_project 1 197421131 197422545 - Traf5 protein_coding retained_intron MGP_C3HHeJ_T0024012.1 MGP_C3HHeJ_G0016712.1 mouse_genomes_project 1 197421131 197423899 - MGP_C3HHeJ_P0024012 Traf5 protein_coding protein_coding MGP_C3HHeJ_T0024013.1 MGP_C3HHeJ_G0016712.1 mouse_genomes_project 1 197421356 197451176 - MGP_C3HHeJ_P0024013 Traf5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0024014.1 MGP_C3HHeJ_G0016712.1 mouse_genomes_project 1 197421356 197474484 - MGP_C3HHeJ_P0024014 Traf5 protein_coding protein_coding MGP_C3HHeJ_T0024015.1 MGP_C3HHeJ_G0016712.1 mouse_genomes_project 1 197430729 197435307 - MGP_C3HHeJ_P0024015 Traf5 protein_coding protein_coding MGP_C3HHeJ_T0024016.1 MGP_C3HHeJ_G0016712.1 mouse_genomes_project 1 197431756 197435307 - Traf5 protein_coding retained_intron MGP_C3HHeJ_T0000665.1 MGP_C3HHeJ_G0000610.1 mouse_genomes_project 1 160015199 160015600 + TEC TEC MGP_C3HHeJ_T0022220.1 MGP_C3HHeJ_G0016326.1 mouse_genomes_project 1 142939746 142994751 - MGP_C3HHeJ_P0022220 protein_coding protein_coding MGP_C3HHeJ_T0022221.1 MGP_C3HHeJ_G0016326.1 mouse_genomes_project 1 142939746 142994751 - MGP_C3HHeJ_P0022221 protein_coding protein_coding MGP_C3HHeJ_T0022226.1 MGP_C3HHeJ_G0016326.1 mouse_genomes_project 1 142939755 142995340 - MGP_C3HHeJ_P0022226 protein_coding protein_coding MGP_C3HHeJ_T0098622.1 MGP_C3HHeJ_G0036816.1 mouse_genomes_project 1 66416355 66416506 + Gm25411 snRNA snRNA MGP_C3HHeJ_T0022086.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138435567 138452370 + MGP_C3HHeJ_P0022086 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022087.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138435599 138452370 + MGP_C3HHeJ_P0022087 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022088.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138435603 138438926 + Tnnt2 protein_coding retained_intron MGP_C3HHeJ_T0022089.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138435603 138443929 + Tnnt2 protein_coding retained_intron MGP_C3HHeJ_T0022090.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138435615 138447226 + MGP_C3HHeJ_P0022090 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022091.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138435623 138452370 + MGP_C3HHeJ_P0022091 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022092.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138435626 138452370 + MGP_C3HHeJ_P0022092 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022093.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138439905 138448636 + MGP_C3HHeJ_P0022093 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022094.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138440063 138452370 + MGP_C3HHeJ_P0022094 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022095.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138440081 138452370 + MGP_C3HHeJ_P0022095 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022096.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138440081 138452370 + MGP_C3HHeJ_P0022096 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022097.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138440081 138452370 + MGP_C3HHeJ_P0022097 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022098.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138440081 138452370 + MGP_C3HHeJ_P0022098 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022099.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138440081 138452370 + MGP_C3HHeJ_P0022099 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022100.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138448626 138448918 + Tnnt2 protein_coding retained_intron MGP_C3HHeJ_T0022846.1 MGP_C3HHeJ_G0016437.1 mouse_genomes_project 1 166993158 167011920 - MGP_C3HHeJ_P0022846 Gorab protein_coding protein_coding MGP_C3HHeJ_T0022847.1 MGP_C3HHeJ_G0016437.1 mouse_genomes_project 1 166993162 167011907 - MGP_C3HHeJ_P0022847 Gorab protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022848.1 MGP_C3HHeJ_G0016437.1 mouse_genomes_project 1 167002666 167011862 - Gorab protein_coding retained_intron MGP_C3HHeJ_T0012114.1 MGP_C3HHeJ_G0010218.1 mouse_genomes_project 1 121837270 121837633 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021901.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136105060 136151026 - MGP_C3HHeJ_P0021901 Zc3h11a protein_coding protein_coding MGP_C3HHeJ_T0021902.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136105069 136151088 - MGP_C3HHeJ_P0021902 Zc3h11a protein_coding protein_coding MGP_C3HHeJ_T0021904.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136110653 136113334 - Zc3h11a protein_coding processed_transcript MGP_C3HHeJ_T0021905.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136113231 136126227 - MGP_C3HHeJ_P0021905 Zc3h11a protein_coding protein_coding MGP_C3HHeJ_T0021906.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136125940 136151086 - MGP_C3HHeJ_P0021906 Zc3h11a protein_coding protein_coding MGP_C3HHeJ_T0021907.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136126198 136151066 - MGP_C3HHeJ_P0021907 Zc3h11a protein_coding protein_coding MGP_C3HHeJ_T0021908.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136127326 136151068 - Zc3h11a protein_coding retained_intron MGP_C3HHeJ_T0021909.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136127617 136150990 - MGP_C3HHeJ_P0021909 Zc3h11a protein_coding protein_coding MGP_C3HHeJ_T0021910.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136132740 136151004 - MGP_C3HHeJ_P0021910 Zc3h11a protein_coding protein_coding MGP_C3HHeJ_T0021911.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136134176 136150989 - Zc3h11a protein_coding retained_intron MGP_C3HHeJ_T0021912.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136134429 136151076 - Zc3h11a protein_coding processed_transcript MGP_C3HHeJ_T0021913.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136144027 136151067 - Zc3h11a protein_coding processed_transcript MGP_C3HHeJ_T0021914.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136144371 136151088 - Zc3h11a protein_coding retained_intron MGP_C3HHeJ_T0005795.1 MGP_C3HHeJ_G0004852.1 mouse_genomes_project 1 115183260 115184795 + Gm28189 lincRNA lincRNA MGP_C3HHeJ_T0000753.1 MGP_C3HHeJ_G0000696.1 mouse_genomes_project 1 191546671 191547783 + TEC TEC MGP_C3HHeJ_T0020764.1 MGP_C3HHeJ_G0016007.1 mouse_genomes_project 1 86756278 86762704 + protein_coding retained_intron MGP_C3HHeJ_T0020765.1 MGP_C3HHeJ_G0016007.1 mouse_genomes_project 1 86756278 86763588 + protein_coding processed_transcript MGP_C3HHeJ_T0020766.1 MGP_C3HHeJ_G0016007.1 mouse_genomes_project 1 86756511 86827083 + MGP_C3HHeJ_P0020766 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020767.1 MGP_C3HHeJ_G0016007.1 mouse_genomes_project 1 86756511 86833455 + MGP_C3HHeJ_P0020767 protein_coding protein_coding MGP_C3HHeJ_T0020768.1 MGP_C3HHeJ_G0016007.1 mouse_genomes_project 1 86756533 86759555 + protein_coding retained_intron MGP_C3HHeJ_T0020769.1 MGP_C3HHeJ_G0016007.1 mouse_genomes_project 1 86756584 86764212 + protein_coding retained_intron MGP_C3HHeJ_T0020770.1 MGP_C3HHeJ_G0016007.1 mouse_genomes_project 1 86756763 86769313 + protein_coding processed_transcript MGP_C3HHeJ_T0020773.1 MGP_C3HHeJ_G0016007.1 mouse_genomes_project 1 86805084 86827134 + protein_coding processed_transcript MGP_C3HHeJ_T0020774.1 MGP_C3HHeJ_G0016007.1 mouse_genomes_project 1 86822404 86827101 + protein_coding retained_intron MGP_C3HHeJ_T0018915.1 MGP_C3HHeJ_G0015664.1 mouse_genomes_project 1 24397678 24405163 - MGP_C3HHeJ_P0018915 4931408C20Rik protein_coding protein_coding MGP_C3HHeJ_T0020949.1 MGP_C3HHeJ_G0016045.1 mouse_genomes_project 1 89061838 89122337 + MGP_C3HHeJ_P0020949 Ugt1a5 protein_coding protein_coding MGP_C3HHeJ_T0021418.1 MGP_C3HHeJ_G0016158.1 mouse_genomes_project 1 120275022 120291625 - MGP_C3HHeJ_P0021418 Tsn protein_coding protein_coding MGP_C3HHeJ_T0021419.1 MGP_C3HHeJ_G0016158.1 mouse_genomes_project 1 120279883 120290447 - Tsn protein_coding retained_intron MGP_C3HHeJ_T0021420.1 MGP_C3HHeJ_G0016158.1 mouse_genomes_project 1 120281123 120290196 - Tsn protein_coding retained_intron MGP_C3HHeJ_T0021421.1 MGP_C3HHeJ_G0016158.1 mouse_genomes_project 1 120284924 120291671 - Tsn protein_coding processed_transcript MGP_C3HHeJ_T0021422.1 MGP_C3HHeJ_G0016158.1 mouse_genomes_project 1 120288916 120291445 - Tsn protein_coding retained_intron MGP_C3HHeJ_T0021423.1 MGP_C3HHeJ_G0016158.1 mouse_genomes_project 1 120290889 120291986 - Tsn protein_coding retained_intron MGP_C3HHeJ_T0000391.1 MGP_C3HHeJ_G0000339.1 mouse_genomes_project 1 23491406 23492422 - TEC TEC MGP_C3HHeJ_T0021518.1 MGP_C3HHeJ_G0016176.1 mouse_genomes_project 1 122528236 122560753 - MGP_C3HHeJ_P0021518 Marco protein_coding protein_coding MGP_C3HHeJ_T0021519.1 MGP_C3HHeJ_G0016176.1 mouse_genomes_project 1 122545556 122560485 - MGP_C3HHeJ_P0021519 Marco protein_coding protein_coding MGP_C3HHeJ_T0021495.1 MGP_C3HHeJ_G0016169.1 mouse_genomes_project 1 121952371 122022824 - MGP_C3HHeJ_P0021495 Cfap221 protein_coding protein_coding MGP_C3HHeJ_T0021496.1 MGP_C3HHeJ_G0016169.1 mouse_genomes_project 1 121952549 122020850 - MGP_C3HHeJ_P0021496 Cfap221 protein_coding protein_coding MGP_C3HHeJ_T0021497.1 MGP_C3HHeJ_G0016169.1 mouse_genomes_project 1 121986920 122022868 - MGP_C3HHeJ_P0021497 Cfap221 protein_coding protein_coding MGP_C3HHeJ_T0098337.1 MGP_C3HHeJ_G0036548.1 mouse_genomes_project 1 192328408 192331900 - Gm15509 sense_intronic sense_intronic MGP_C3HHeJ_T0000347.1 MGP_C3HHeJ_G0000297.1 mouse_genomes_project 1 10282907 10283458 - TEC TEC MGP_C3HHeJ_T0098623.1 MGP_C3HHeJ_G0036817.1 mouse_genomes_project 1 66842188 66842248 + Gm27934 snRNA snRNA MGP_C3HHeJ_T0002814.1 MGP_C3HHeJ_G0002659.1 mouse_genomes_project 1 133191022 133205131 - Gm15848 antisense antisense MGP_C3HHeJ_T0002815.1 MGP_C3HHeJ_G0002659.1 mouse_genomes_project 1 133191248 133201721 - Gm15848 antisense antisense MGP_C3HHeJ_T0002816.1 MGP_C3HHeJ_G0002659.1 mouse_genomes_project 1 133198448 133201751 - Gm15848 antisense antisense MGP_C3HHeJ_T0005625.1 MGP_C3HHeJ_G0004725.1 mouse_genomes_project 1 40850894 40851293 + lincRNA lincRNA MGP_C3HHeJ_T0021394.1 MGP_C3HHeJ_G0016150.1 mouse_genomes_project 1 109295843 109309605 + MGP_C3HHeJ_P0021394 protein_coding protein_coding MGP_C3HHeJ_T0021986.1 MGP_C3HHeJ_G0016278.1 mouse_genomes_project 1 137019793 137035936 + MGP_C3HHeJ_P0021986 Rabif protein_coding protein_coding MGP_C3HHeJ_T0022256.1 MGP_C3HHeJ_G0016332.1 mouse_genomes_project 1 146708659 146739319 + MGP_C3HHeJ_P0022256 Uchl5 protein_coding protein_coding MGP_C3HHeJ_T0022257.1 MGP_C3HHeJ_G0016332.1 mouse_genomes_project 1 146708663 146715623 + Uchl5 protein_coding retained_intron MGP_C3HHeJ_T0022258.1 MGP_C3HHeJ_G0016332.1 mouse_genomes_project 1 146708668 146739480 + MGP_C3HHeJ_P0022258 Uchl5 protein_coding protein_coding MGP_C3HHeJ_T0022259.1 MGP_C3HHeJ_G0016332.1 mouse_genomes_project 1 146708692 146717706 + Uchl5 protein_coding retained_intron MGP_C3HHeJ_T0022260.1 MGP_C3HHeJ_G0016332.1 mouse_genomes_project 1 146708708 146731853 + MGP_C3HHeJ_P0022260 Uchl5 protein_coding protein_coding MGP_C3HHeJ_T0022261.1 MGP_C3HHeJ_G0016332.1 mouse_genomes_project 1 146715003 146726105 + Uchl5 protein_coding retained_intron MGP_C3HHeJ_T0022262.1 MGP_C3HHeJ_G0016332.1 mouse_genomes_project 1 146726043 146738881 + MGP_C3HHeJ_P0022262 Uchl5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005831.1 MGP_C3HHeJ_G0004881.1 mouse_genomes_project 1 136095609 136099621 + Gm26706 lincRNA lincRNA MGP_C3HHeJ_T0009457.1 MGP_C3HHeJ_G0007590.1 mouse_genomes_project 1 165820581 165820691 + Mir214 miRNA miRNA MGP_C3HHeJ_T0000378.1 MGP_C3HHeJ_G0000326.1 mouse_genomes_project 1 23006313 23008846 - TEC TEC MGP_C3HHeJ_T0023466.1 MGP_C3HHeJ_G0016600.1 mouse_genomes_project 1 180261661 180292031 - MGP_C3HHeJ_P0023466 Opn3 protein_coding protein_coding MGP_C3HHeJ_T0023650.1 MGP_C3HHeJ_G0016635.1 mouse_genomes_project 1 185716098 185745771 + MGP_C3HHeJ_P0023650 Acbd3 protein_coding protein_coding MGP_C3HHeJ_T0023651.1 MGP_C3HHeJ_G0016635.1 mouse_genomes_project 1 185719912 185724550 + Acbd3 protein_coding retained_intron MGP_C3HHeJ_T0021468.1 MGP_C3HHeJ_G0016163.1 mouse_genomes_project 1 121431057 121439122 - MGP_C3HHeJ_P0021468 Inhbb protein_coding protein_coding MGP_C3HHeJ_T0009459.1 MGP_C3HHeJ_G0007592.1 mouse_genomes_project 1 169402397 169402540 + Gm44458 miRNA miRNA MGP_C3HHeJ_T0019097.1 MGP_C3HHeJ_G0015698.1 mouse_genomes_project 1 34811976 34823320 - MGP_C3HHeJ_P0019097 Ankrd39 protein_coding protein_coding MGP_C3HHeJ_T0009426.1 MGP_C3HHeJ_G0007559.1 mouse_genomes_project 1 87060208 87060355 - Mir3535 miRNA miRNA MGP_C3HHeJ_T0000632.1 MGP_C3HHeJ_G0000577.1 mouse_genomes_project 1 141815874 141820008 - TEC TEC MGP_C3HHeJ_T0005840.1 MGP_C3HHeJ_G0004890.1 mouse_genomes_project 1 139209666 139212206 - Gm33994 lincRNA lincRNA MGP_C3HHeJ_T0021939.1 MGP_C3HHeJ_G0016268.1 mouse_genomes_project 1 136701220 136710312 + MGP_C3HHeJ_P0021939 Chil1 protein_coding protein_coding MGP_C3HHeJ_T0021940.1 MGP_C3HHeJ_G0016268.1 mouse_genomes_project 1 136701448 136710305 + MGP_C3HHeJ_P0021940 Chil1 protein_coding protein_coding MGP_C3HHeJ_T0021941.1 MGP_C3HHeJ_G0016268.1 mouse_genomes_project 1 136701448 136710457 + MGP_C3HHeJ_P0021941 Chil1 protein_coding protein_coding MGP_C3HHeJ_T0021942.1 MGP_C3HHeJ_G0016268.1 mouse_genomes_project 1 136701518 136706827 + MGP_C3HHeJ_P0021942 Chil1 protein_coding protein_coding MGP_C3HHeJ_T0021943.1 MGP_C3HHeJ_G0016268.1 mouse_genomes_project 1 136701525 136706837 + MGP_C3HHeJ_P0021943 Chil1 protein_coding protein_coding MGP_C3HHeJ_T0021944.1 MGP_C3HHeJ_G0016268.1 mouse_genomes_project 1 136701526 136707114 + Chil1 protein_coding retained_intron MGP_C3HHeJ_T0021945.1 MGP_C3HHeJ_G0016268.1 mouse_genomes_project 1 136702845 136706896 + Chil1 protein_coding retained_intron MGP_C3HHeJ_T0021946.1 MGP_C3HHeJ_G0016268.1 mouse_genomes_project 1 136709401 136710303 + Chil1 protein_coding retained_intron MGP_C3HHeJ_T0005675.1 MGP_C3HHeJ_G0004757.1 mouse_genomes_project 1 61211738 61231018 + 9530026F06Rik lincRNA lincRNA MGP_C3HHeJ_T0099848.1 MGP_C3HHeJ_G0038042.1 mouse_genomes_project 1 58807680 58807811 + Gm25502 snoRNA snoRNA MGP_C3HHeJ_T0021662.1 MGP_C3HHeJ_G0016205.1 mouse_genomes_project 1 133008130 133034915 - MGP_C3HHeJ_P0021662 C4bp protein_coding protein_coding MGP_C3HHeJ_T0021663.1 MGP_C3HHeJ_G0016205.1 mouse_genomes_project 1 133010171 133021714 - MGP_C3HHeJ_P0021663 C4bp protein_coding protein_coding MGP_C3HHeJ_T0021664.1 MGP_C3HHeJ_G0016205.1 mouse_genomes_project 1 133016367 133034893 - MGP_C3HHeJ_P0021664 C4bp protein_coding protein_coding MGP_C3HHeJ_T0021665.1 MGP_C3HHeJ_G0016205.1 mouse_genomes_project 1 133031062 133034907 - C4bp protein_coding retained_intron MGP_C3HHeJ_T0005776.1 MGP_C3HHeJ_G0004838.1 mouse_genomes_project 1 97917799 97970532 - 4930533P14Rik lincRNA lincRNA MGP_C3HHeJ_T0012193.1 MGP_C3HHeJ_G0010297.1 mouse_genomes_project 1 158512460 158513041 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022239.1 MGP_C3HHeJ_G0016329.1 mouse_genomes_project 1 146559163 146573105 + MGP_C3HHeJ_P0022239 B3galt2 protein_coding protein_coding MGP_C3HHeJ_T0020939.1 MGP_C3HHeJ_G0016042.1 mouse_genomes_project 1 88975080 89123352 + MGP_C3HHeJ_P0020939 protein_coding protein_coding MGP_C3HHeJ_T0020941.1 MGP_C3HHeJ_G0016042.1 mouse_genomes_project 1 88986915 89117572 + MGP_C3HHeJ_P0020941 protein_coding protein_coding MGP_C3HHeJ_T0020942.1 MGP_C3HHeJ_G0016042.1 mouse_genomes_project 1 88986917 89123352 + MGP_C3HHeJ_P0020942 protein_coding protein_coding MGP_C3HHeJ_T0020943.1 MGP_C3HHeJ_G0016042.1 mouse_genomes_project 1 88986967 89121766 + MGP_C3HHeJ_P0020943 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099824.1 MGP_C3HHeJ_G0038018.1 mouse_genomes_project 1 12331035 12331155 - Gm26345 snoRNA snoRNA MGP_C3HHeJ_T0021414.1 MGP_C3HHeJ_G0016155.1 mouse_genomes_project 1 117629336 118583145 + MGP_C3HHeJ_P0021414 Cntnap5a protein_coding protein_coding MGP_C3HHeJ_T0021415.1 MGP_C3HHeJ_G0016155.1 mouse_genomes_project 1 117629717 118575825 + MGP_C3HHeJ_P0021415 Cntnap5a protein_coding unknown_likely_coding MGP_C3HHeJ_T0021646.1 MGP_C3HHeJ_G0016201.1 mouse_genomes_project 1 131564317 131720392 + Thsd7b protein_coding retained_intron MGP_C3HHeJ_T0021647.1 MGP_C3HHeJ_G0016201.1 mouse_genomes_project 1 131564359 132525317 + MGP_C3HHeJ_P0021647 Thsd7b protein_coding protein_coding MGP_C3HHeJ_T0021648.1 MGP_C3HHeJ_G0016201.1 mouse_genomes_project 1 131564478 132356239 + MGP_C3HHeJ_P0021648 Thsd7b protein_coding protein_coding MGP_C3HHeJ_T0021649.1 MGP_C3HHeJ_G0016201.1 mouse_genomes_project 1 131564500 131921022 + Thsd7b protein_coding processed_transcript MGP_C3HHeJ_T0021650.1 MGP_C3HHeJ_G0016201.1 mouse_genomes_project 1 131821747 131921145 + MGP_C3HHeJ_P0021650 Thsd7b protein_coding protein_coding MGP_C3HHeJ_T0021651.1 MGP_C3HHeJ_G0016201.1 mouse_genomes_project 1 131905763 131908532 + Thsd7b protein_coding retained_intron MGP_C3HHeJ_T0021652.1 MGP_C3HHeJ_G0016201.1 mouse_genomes_project 1 132214960 132491210 + Thsd7b protein_coding processed_transcript MGP_C3HHeJ_T0021653.1 MGP_C3HHeJ_G0016201.1 mouse_genomes_project 1 132471859 132525315 + Thsd7b protein_coding processed_transcript MGP_C3HHeJ_T0021654.1 MGP_C3HHeJ_G0016201.1 mouse_genomes_project 1 132471874 132473427 + Thsd7b protein_coding processed_transcript MGP_C3HHeJ_T0011956.1 MGP_C3HHeJ_G0010060.1 mouse_genomes_project 1 58474208 58474659 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098668.1 MGP_C3HHeJ_G0036862.1 mouse_genomes_project 1 174705107 174705214 - Gm25235 snRNA snRNA MGP_C3HHeJ_T0097968.1 MGP_C3HHeJ_G0036180.1 mouse_genomes_project 1 152833335 152833444 - n-R5s218 rRNA rRNA MGP_C3HHeJ_T0020577.1 MGP_C3HHeJ_G0015968.1 mouse_genomes_project 1 78909490 78928694 + MGP_C3HHeJ_P0020577 Mogat1 protein_coding protein_coding MGP_C3HHeJ_T0020578.1 MGP_C3HHeJ_G0015968.1 mouse_genomes_project 1 78909659 78930234 + MGP_C3HHeJ_P0020578 Mogat1 protein_coding protein_coding MGP_C3HHeJ_T0020579.1 MGP_C3HHeJ_G0015968.1 mouse_genomes_project 1 78909668 78939306 + MGP_C3HHeJ_P0020579 Mogat1 protein_coding protein_coding MGP_C3HHeJ_T0020580.1 MGP_C3HHeJ_G0015968.1 mouse_genomes_project 1 78910314 78923856 + MGP_C3HHeJ_P0020580 Mogat1 protein_coding protein_coding MGP_C3HHeJ_T0020581.1 MGP_C3HHeJ_G0015968.1 mouse_genomes_project 1 78910369 78939308 + MGP_C3HHeJ_P0020581 Mogat1 protein_coding protein_coding MGP_C3HHeJ_T0020582.1 MGP_C3HHeJ_G0015968.1 mouse_genomes_project 1 78938762 78939308 + Mogat1 protein_coding processed_transcript MGP_C3HHeJ_T0101583.1 MGP_C3HHeJ_G0039549.1 mouse_genomes_project 1 134320619 134321410 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011754.1 MGP_C3HHeJ_G0009858.1 mouse_genomes_project 1 1748835 1750283 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005808.1 MGP_C3HHeJ_G0004862.1 mouse_genomes_project 1 122821709 122826832 + Gm29346 lincRNA lincRNA MGP_C3HHeJ_T0000570.1 MGP_C3HHeJ_G0000517.1 mouse_genomes_project 1 125610077 125613297 - TEC TEC MGP_C3HHeJ_T0023434.1 MGP_C3HHeJ_G0016591.1 mouse_genomes_project 1 178961016 178961946 + MGP_C3HHeJ_P0023434 Olfr417 protein_coding protein_coding MGP_C3HHeJ_T0002711.1 MGP_C3HHeJ_G0002581.1 mouse_genomes_project 1 34356671 34357738 - Gm37335 antisense antisense MGP_C3HHeJ_T0023920.1 MGP_C3HHeJ_G0016692.1 mouse_genomes_project 1 195452904 195506049 - MGP_C3HHeJ_P0023920 Prox1 protein_coding protein_coding MGP_C3HHeJ_T0023921.1 MGP_C3HHeJ_G0016692.1 mouse_genomes_project 1 195457322 195504728 - MGP_C3HHeJ_P0023921 Prox1 protein_coding protein_coding MGP_C3HHeJ_T0023922.1 MGP_C3HHeJ_G0016692.1 mouse_genomes_project 1 195457879 195506015 - MGP_C3HHeJ_P0023922 Prox1 protein_coding protein_coding MGP_C3HHeJ_T0023316.1 MGP_C3HHeJ_G0016544.1 mouse_genomes_project 1 176499818 176509844 - MGP_C3HHeJ_P0023316 Pea15a protein_coding protein_coding MGP_C3HHeJ_T0023317.1 MGP_C3HHeJ_G0016544.1 mouse_genomes_project 1 176499818 176509844 - MGP_C3HHeJ_P0023317 Pea15a protein_coding protein_coding MGP_C3HHeJ_T0023318.1 MGP_C3HHeJ_G0016544.1 mouse_genomes_project 1 176501503 176502903 - Pea15a protein_coding processed_transcript MGP_C3HHeJ_T0023319.1 MGP_C3HHeJ_G0016544.1 mouse_genomes_project 1 176502248 176509737 - MGP_C3HHeJ_P0023319 Pea15a protein_coding protein_coding MGP_C3HHeJ_T0023320.1 MGP_C3HHeJ_G0016544.1 mouse_genomes_project 1 176502862 176509844 - Pea15a protein_coding retained_intron MGP_C3HHeJ_T0005777.1 MGP_C3HHeJ_G0004839.1 mouse_genomes_project 1 99479842 99486560 + 1810006J02Rik lincRNA lincRNA MGP_C3HHeJ_T0005778.1 MGP_C3HHeJ_G0004839.1 mouse_genomes_project 1 99479853 99493015 + 1810006J02Rik lincRNA lincRNA MGP_C3HHeJ_T0022664.1 MGP_C3HHeJ_G0016404.1 mouse_genomes_project 1 162998505 163416237 + MGP_C3HHeJ_P0022664 Tnr protein_coding protein_coding MGP_C3HHeJ_T0022665.1 MGP_C3HHeJ_G0016404.1 mouse_genomes_project 1 162998577 163211404 + Tnr protein_coding retained_intron MGP_C3HHeJ_T0022666.1 MGP_C3HHeJ_G0016404.1 mouse_genomes_project 1 163211118 163407843 + MGP_C3HHeJ_P0022666 Tnr protein_coding protein_coding MGP_C3HHeJ_T0022667.1 MGP_C3HHeJ_G0016404.1 mouse_genomes_project 1 163248547 163331141 + MGP_C3HHeJ_P0022667 Tnr protein_coding protein_coding MGP_C3HHeJ_T0022668.1 MGP_C3HHeJ_G0016404.1 mouse_genomes_project 1 163331195 163344418 + MGP_C3HHeJ_P0022668 Tnr protein_coding protein_coding MGP_C3HHeJ_T0011904.1 MGP_C3HHeJ_G0010008.1 mouse_genomes_project 1 43865703 43866641 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005853.1 MGP_C3HHeJ_G0004899.1 mouse_genomes_project 1 141370035 141408887 - Gm5833 lincRNA lincRNA MGP_C3HHeJ_T0005854.1 MGP_C3HHeJ_G0004899.1 mouse_genomes_project 1 141398221 141408875 - Gm5833 lincRNA lincRNA MGP_C3HHeJ_T0099865.1 MGP_C3HHeJ_G0038059.1 mouse_genomes_project 1 87064487 87064557 - Snord82 snoRNA snoRNA MGP_C3HHeJ_T0002756.1 MGP_C3HHeJ_G0002616.1 mouse_genomes_project 1 62552274 62555613 - Gm29083 antisense antisense MGP_C3HHeJ_T0012271.1 MGP_C3HHeJ_G0010375.1 mouse_genomes_project 1 198228767 198229221 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000483.1 MGP_C3HHeJ_G0000430.1 mouse_genomes_project 1 70477851 70480251 - TEC TEC MGP_C3HHeJ_T0098638.1 MGP_C3HHeJ_G0036832.1 mouse_genomes_project 1 100400408 100400508 + Gm23434 snRNA snRNA MGP_C3HHeJ_T0011822.1 MGP_C3HHeJ_G0009926.1 mouse_genomes_project 1 18417211 18418412 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024082.1 MGP_C3HHeJ_G0016722.1 mouse_genomes_project 1 198626338 198627576 + Lamb3 protein_coding retained_intron MGP_C3HHeJ_T0024083.1 MGP_C3HHeJ_G0016722.1 mouse_genomes_project 1 198626364 198774690 + MGP_C3HHeJ_P0024083 Lamb3 protein_coding protein_coding MGP_C3HHeJ_T0024084.1 MGP_C3HHeJ_G0016722.1 mouse_genomes_project 1 198626371 198755506 + MGP_C3HHeJ_P0024084 Lamb3 protein_coding protein_coding MGP_C3HHeJ_T0024085.1 MGP_C3HHeJ_G0016722.1 mouse_genomes_project 1 198626389 198677338 + Lamb3 protein_coding processed_transcript MGP_C3HHeJ_T0024094.1 MGP_C3HHeJ_G0016722.1 mouse_genomes_project 1 198697944 198706246 + Lamb3 protein_coding processed_transcript MGP_C3HHeJ_T0024095.1 MGP_C3HHeJ_G0016722.1 mouse_genomes_project 1 198730839 198774690 + MGP_C3HHeJ_P0024095 Lamb3 protein_coding protein_coding MGP_C3HHeJ_T0024096.1 MGP_C3HHeJ_G0016722.1 mouse_genomes_project 1 198731067 198732224 + Lamb3 protein_coding processed_transcript MGP_C3HHeJ_T0024097.1 MGP_C3HHeJ_G0016722.1 mouse_genomes_project 1 198731089 198774687 + MGP_C3HHeJ_P0024097 Lamb3 protein_coding protein_coding MGP_C3HHeJ_T0024098.1 MGP_C3HHeJ_G0016722.1 mouse_genomes_project 1 198750215 198755505 + Lamb3 protein_coding processed_transcript MGP_C3HHeJ_T0018743.1 MGP_C3HHeJ_G0015623.1 mouse_genomes_project 1 13411672 13423089 - MGP_C3HHeJ_P0018743 4930444P10Rik protein_coding protein_coding MGP_C3HHeJ_T0018744.1 MGP_C3HHeJ_G0015623.1 mouse_genomes_project 1 13411672 13441595 - MGP_C3HHeJ_P0018744 4930444P10Rik protein_coding protein_coding MGP_C3HHeJ_T0018745.1 MGP_C3HHeJ_G0015623.1 mouse_genomes_project 1 13411672 13441595 - MGP_C3HHeJ_P0018745 4930444P10Rik protein_coding protein_coding MGP_C3HHeJ_T0021399.1 MGP_C3HHeJ_G0016152.1 mouse_genomes_project 1 111757676 111771191 + MGP_C3HHeJ_P0021399 Cdh7 protein_coding protein_coding MGP_C3HHeJ_T0021400.1 MGP_C3HHeJ_G0016152.1 mouse_genomes_project 1 111757955 111922517 + MGP_C3HHeJ_P0021400 Cdh7 protein_coding protein_coding MGP_C3HHeJ_T0021401.1 MGP_C3HHeJ_G0016152.1 mouse_genomes_project 1 111758226 111770562 + MGP_C3HHeJ_P0021401 Cdh7 protein_coding protein_coding MGP_C3HHeJ_T0021402.1 MGP_C3HHeJ_G0016152.1 mouse_genomes_project 1 111758251 111769621 + MGP_C3HHeJ_P0021402 Cdh7 protein_coding protein_coding MGP_C3HHeJ_T0021403.1 MGP_C3HHeJ_G0016152.1 mouse_genomes_project 1 111758474 111921569 + MGP_C3HHeJ_P0021403 Cdh7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021404.1 MGP_C3HHeJ_G0016152.1 mouse_genomes_project 1 111758526 111774130 + MGP_C3HHeJ_P0021404 Cdh7 protein_coding protein_coding MGP_C3HHeJ_T0021405.1 MGP_C3HHeJ_G0016152.1 mouse_genomes_project 1 111758982 111921375 + MGP_C3HHeJ_P0021405 Cdh7 protein_coding protein_coding MGP_C3HHeJ_T0021406.1 MGP_C3HHeJ_G0016152.1 mouse_genomes_project 1 111769220 111921563 + MGP_C3HHeJ_P0021406 Cdh7 protein_coding protein_coding MGP_C3HHeJ_T0021407.1 MGP_C3HHeJ_G0016152.1 mouse_genomes_project 1 111880611 111920432 + MGP_C3HHeJ_P0021407 Cdh7 protein_coding protein_coding MGP_C3HHeJ_T0002759.1 MGP_C3HHeJ_G0002619.1 mouse_genomes_project 1 69666034 69702955 + Gm29114 antisense antisense MGP_C3HHeJ_T0005866.1 MGP_C3HHeJ_G0004910.1 mouse_genomes_project 1 156983350 157000645 - C230024C17Rik lincRNA lincRNA MGP_C3HHeJ_T0005979.1 MGP_C3HHeJ_G0004997.1 mouse_genomes_project 1 196511912 196513270 + Gm38161 lincRNA lincRNA MGP_C3HHeJ_T0022878.1 MGP_C3HHeJ_G0016446.1 mouse_genomes_project 1 167789989 167861045 + MGP_C3HHeJ_P0022878 F5 protein_coding protein_coding MGP_C3HHeJ_T0019985.1 MGP_C3HHeJ_G0015860.1 mouse_genomes_project 1 63533902 63610107 - MGP_C3HHeJ_P0019985 Dytn protein_coding protein_coding MGP_C3HHeJ_T0019986.1 MGP_C3HHeJ_G0015860.1 mouse_genomes_project 1 63585860 63610090 - Dytn protein_coding retained_intron MGP_C3HHeJ_T0012184.1 MGP_C3HHeJ_G0010288.1 mouse_genomes_project 1 154689005 154689874 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022044.1 MGP_C3HHeJ_G0016291.1 mouse_genomes_project 1 137902089 137947411 + MGP_C3HHeJ_P0022044 Lmod1 protein_coding protein_coding MGP_C3HHeJ_T0005883.1 MGP_C3HHeJ_G0004922.1 mouse_genomes_project 1 162573468 162605107 + 4930562F17Rik lincRNA lincRNA MGP_C3HHeJ_T0009454.1 MGP_C3HHeJ_G0007587.1 mouse_genomes_project 1 162811381 162811447 + Mir1843b miRNA miRNA MGP_C3HHeJ_T0018742.1 MGP_C3HHeJ_G0015622.1 mouse_genomes_project 1 13204336 13239644 - MGP_C3HHeJ_P0018742 Sbspon protein_coding protein_coding MGP_C3HHeJ_T0012016.1 MGP_C3HHeJ_G0010120.1 mouse_genomes_project 1 80392830 80393308 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005677.1 MGP_C3HHeJ_G0004759.1 mouse_genomes_project 1 61317127 61318205 + Gm28449 lincRNA lincRNA MGP_C3HHeJ_T0018705.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10376371 10613348 - MGP_C3HHeJ_P0018705 Ncoa2 protein_coding protein_coding MGP_C3HHeJ_T0018706.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10376425 10614992 - MGP_C3HHeJ_P0018706 Ncoa2 protein_coding protein_coding MGP_C3HHeJ_T0018707.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10379744 10614992 - MGP_C3HHeJ_P0018707 Ncoa2 protein_coding protein_coding MGP_C3HHeJ_T0018708.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10382571 10383886 - Ncoa2 protein_coding processed_transcript MGP_C3HHeJ_T0018709.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10383855 10385765 - Ncoa2 protein_coding retained_intron MGP_C3HHeJ_T0018710.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10385686 10388263 - Ncoa2 protein_coding retained_intron MGP_C3HHeJ_T0018711.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10403353 10614992 - Ncoa2 protein_coding retained_intron MGP_C3HHeJ_T0018712.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10404780 10614938 - Ncoa2 protein_coding retained_intron MGP_C3HHeJ_T0018713.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10422294 10613338 - Ncoa2 protein_coding retained_intron MGP_C3HHeJ_T0018714.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10424627 10614938 - Ncoa2 protein_coding retained_intron MGP_C3HHeJ_T0018715.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10430126 10537300 - MGP_C3HHeJ_P0018715 Ncoa2 protein_coding protein_coding MGP_C3HHeJ_T0019316.1 MGP_C3HHeJ_G0015739.1 mouse_genomes_project 1 38936579 38962839 + MGP_C3HHeJ_P0019316 Il18r1 protein_coding protein_coding MGP_C3HHeJ_T0019317.1 MGP_C3HHeJ_G0015739.1 mouse_genomes_project 1 38936703 38962841 + MGP_C3HHeJ_P0019317 Il18r1 protein_coding protein_coding MGP_C3HHeJ_T0019318.1 MGP_C3HHeJ_G0015739.1 mouse_genomes_project 1 38936997 38962839 + MGP_C3HHeJ_P0019318 Il18r1 protein_coding protein_coding MGP_C3HHeJ_T0019319.1 MGP_C3HHeJ_G0015739.1 mouse_genomes_project 1 38937033 38972102 + MGP_C3HHeJ_P0019319 Il18r1 protein_coding protein_coding MGP_C3HHeJ_T0019320.1 MGP_C3HHeJ_G0015739.1 mouse_genomes_project 1 38937033 38972103 + MGP_C3HHeJ_P0019320 Il18r1 protein_coding protein_coding MGP_C3HHeJ_T0019321.1 MGP_C3HHeJ_G0015739.1 mouse_genomes_project 1 38937033 38972082 + MGP_C3HHeJ_P0019321 Il18r1 protein_coding protein_coding MGP_C3HHeJ_T0020143.1 MGP_C3HHeJ_G0015893.1 mouse_genomes_project 1 71226521 71296848 - MGP_C3HHeJ_P0020143 Bard1 protein_coding protein_coding MGP_C3HHeJ_T0023447.1 MGP_C3HHeJ_G0016597.1 mouse_genomes_project 1 179641687 180085175 - MGP_C3HHeJ_P0023447 Rgs7 protein_coding protein_coding MGP_C3HHeJ_T0023448.1 MGP_C3HHeJ_G0016597.1 mouse_genomes_project 1 179641688 180084951 - MGP_C3HHeJ_P0023448 Rgs7 protein_coding protein_coding MGP_C3HHeJ_T0023449.1 MGP_C3HHeJ_G0016597.1 mouse_genomes_project 1 179641817 180085065 - MGP_C3HHeJ_P0023449 Rgs7 protein_coding protein_coding MGP_C3HHeJ_T0023450.1 MGP_C3HHeJ_G0016597.1 mouse_genomes_project 1 179642334 180083801 - MGP_C3HHeJ_P0023450 Rgs7 protein_coding protein_coding MGP_C3HHeJ_T0023451.1 MGP_C3HHeJ_G0016597.1 mouse_genomes_project 1 179642334 179668659 - MGP_C3HHeJ_P0023451 Rgs7 protein_coding protein_coding MGP_C3HHeJ_T0023452.1 MGP_C3HHeJ_G0016597.1 mouse_genomes_project 1 179642334 179668719 - MGP_C3HHeJ_P0023452 Rgs7 protein_coding protein_coding MGP_C3HHeJ_T0023453.1 MGP_C3HHeJ_G0016597.1 mouse_genomes_project 1 179642335 179661981 - MGP_C3HHeJ_P0023453 Rgs7 protein_coding protein_coding MGP_C3HHeJ_T0023454.1 MGP_C3HHeJ_G0016597.1 mouse_genomes_project 1 179657869 179661501 - Rgs7 protein_coding retained_intron MGP_C3HHeJ_T0012165.1 MGP_C3HHeJ_G0010269.1 mouse_genomes_project 1 147239848 147240253 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021074.1 MGP_C3HHeJ_G0016075.1 mouse_genomes_project 1 92487775 92489515 - Hes6 protein_coding retained_intron MGP_C3HHeJ_T0021075.1 MGP_C3HHeJ_G0016075.1 mouse_genomes_project 1 92487775 92489501 - Hes6 protein_coding retained_intron MGP_C3HHeJ_T0021076.1 MGP_C3HHeJ_G0016075.1 mouse_genomes_project 1 92487775 92489515 - MGP_C3HHeJ_P0021076 Hes6 protein_coding protein_coding MGP_C3HHeJ_T0021077.1 MGP_C3HHeJ_G0016075.1 mouse_genomes_project 1 92488579 92489501 - Hes6 protein_coding retained_intron MGP_C3HHeJ_T0021078.1 MGP_C3HHeJ_G0016075.1 mouse_genomes_project 1 92488640 92490331 - Hes6 protein_coding processed_transcript MGP_C3HHeJ_T0098652.1 MGP_C3HHeJ_G0036846.1 mouse_genomes_project 1 136802050 136802157 - Gm24517 snRNA snRNA MGP_C3HHeJ_T0021738.1 MGP_C3HHeJ_G0016225.1 mouse_genomes_project 1 134050586 134085433 + MGP_C3HHeJ_P0021738 Ctse protein_coding protein_coding MGP_C3HHeJ_T0021739.1 MGP_C3HHeJ_G0016225.1 mouse_genomes_project 1 134050774 134085431 + MGP_C3HHeJ_P0021739 Ctse protein_coding protein_coding MGP_C3HHeJ_T0021740.1 MGP_C3HHeJ_G0016225.1 mouse_genomes_project 1 134071861 134075397 + Ctse protein_coding retained_intron MGP_C3HHeJ_T0098311.1 MGP_C3HHeJ_G0036523.1 mouse_genomes_project 1 50368440 50370722 + Gm28320 sense_intronic sense_intronic MGP_C3HHeJ_T0020265.1 MGP_C3HHeJ_G0015919.1 mouse_genomes_project 1 74708940 74712651 + MGP_C3HHeJ_P0020265 protein_coding unknown_likely_coding MGP_C3HHeJ_T0020266.1 MGP_C3HHeJ_G0015919.1 mouse_genomes_project 1 74709231 74711136 + MGP_C3HHeJ_P0020266 protein_coding protein_coding MGP_C3HHeJ_T0019667.1 MGP_C3HHeJ_G0015809.1 mouse_genomes_project 1 56962355 56971749 + MGP_C3HHeJ_P0019667 1700066M21Rik protein_coding protein_coding MGP_C3HHeJ_T0019668.1 MGP_C3HHeJ_G0015809.1 mouse_genomes_project 1 56962368 56964898 + 1700066M21Rik protein_coding processed_transcript MGP_C3HHeJ_T0019669.1 MGP_C3HHeJ_G0015809.1 mouse_genomes_project 1 56962375 56964814 + 1700066M21Rik protein_coding processed_transcript MGP_C3HHeJ_T0021667.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133064558 133089956 - MGP_C3HHeJ_P0021667 protein_coding protein_coding MGP_C3HHeJ_T0021668.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133064565 133067622 - protein_coding retained_intron MGP_C3HHeJ_T0021669.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133065654 133104824 - MGP_C3HHeJ_P0021669 protein_coding protein_coding MGP_C3HHeJ_T0021670.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133066391 133089957 - MGP_C3HHeJ_P0021670 protein_coding protein_coding MGP_C3HHeJ_T0021671.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133066391 133089957 - MGP_C3HHeJ_P0021671 protein_coding protein_coding MGP_C3HHeJ_T0021672.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133073073 133089956 - MGP_C3HHeJ_P0021672 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021673.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133073073 133089956 - MGP_C3HHeJ_P0021673 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021674.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133073073 133089956 - MGP_C3HHeJ_P0021674 protein_coding protein_coding MGP_C3HHeJ_T0021675.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133073261 133091349 - MGP_C3HHeJ_P0021675 protein_coding protein_coding MGP_C3HHeJ_T0021676.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133082960 133092766 - MGP_C3HHeJ_P0021676 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000472.1 MGP_C3HHeJ_G0000419.1 mouse_genomes_project 1 66765211 66769811 + TEC TEC MGP_C3HHeJ_T0011748.1 MGP_C3HHeJ_G0009852.1 mouse_genomes_project 1 288958 289436 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020342.1 MGP_C3HHeJ_G0015931.1 mouse_genomes_project 1 75108338 75121573 + MGP_C3HHeJ_P0020342 Wnt6 protein_coding protein_coding MGP_C3HHeJ_T0020343.1 MGP_C3HHeJ_G0015931.1 mouse_genomes_project 1 75118689 75120853 + Wnt6 protein_coding retained_intron MGP_C3HHeJ_T0009399.1 MGP_C3HHeJ_G0007532.1 mouse_genomes_project 1 46564638 46564743 - Mir6350 miRNA miRNA MGP_C3HHeJ_T0002712.1 MGP_C3HHeJ_G0002582.1 mouse_genomes_project 1 34798403 34799107 - Gm38033 antisense antisense MGP_C3HHeJ_T0005893.1 MGP_C3HHeJ_G0004929.1 mouse_genomes_project 1 167216195 167219349 + Gm29500 lincRNA lincRNA MGP_C3HHeJ_T0009377.1 MGP_C3HHeJ_G0007510.1 mouse_genomes_project 1 5894820 5894930 + Gm24276 miRNA miRNA MGP_C3HHeJ_T0005839.1 MGP_C3HHeJ_G0004889.1 mouse_genomes_project 1 139170499 139188719 + Gm37799 lincRNA lincRNA MGP_C3HHeJ_T0021219.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94660834 94681846 + MGP_C3HHeJ_P0021219 Sept2 protein_coding protein_coding MGP_C3HHeJ_T0021220.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94660837 94683233 + MGP_C3HHeJ_P0021220 Sept2 protein_coding protein_coding MGP_C3HHeJ_T0021221.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94660856 94691528 + MGP_C3HHeJ_P0021221 Sept2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0021222.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94660865 94680483 + Sept2 protein_coding retained_intron MGP_C3HHeJ_T0021223.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94660879 94680089 + MGP_C3HHeJ_P0021223 Sept2 protein_coding protein_coding MGP_C3HHeJ_T0021224.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94660903 94664215 + Sept2 protein_coding retained_intron MGP_C3HHeJ_T0021225.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94660903 94683237 + MGP_C3HHeJ_P0021225 Sept2 protein_coding protein_coding MGP_C3HHeJ_T0021226.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94660952 94683262 + MGP_C3HHeJ_P0021226 Sept2 protein_coding protein_coding MGP_C3HHeJ_T0021227.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94661064 94681764 + MGP_C3HHeJ_P0021227 Sept2 protein_coding protein_coding MGP_C3HHeJ_T0021228.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94661067 94681846 + MGP_C3HHeJ_P0021228 Sept2 protein_coding protein_coding MGP_C3HHeJ_T0021229.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94661317 94683260 + MGP_C3HHeJ_P0021229 Sept2 protein_coding protein_coding MGP_C3HHeJ_T0021230.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94687920 94689747 + Sept2 protein_coding retained_intron MGP_C3HHeJ_T0021231.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94688295 94690074 + MGP_C3HHeJ_P0021231 Sept2 protein_coding protein_coding MGP_C3HHeJ_T0021427.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120379839 120602186 + MGP_C3HHeJ_P0021427 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021428.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120379839 120602254 + MGP_C3HHeJ_P0021428 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021429.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120379839 120602186 + MGP_C3HHeJ_P0021429 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021430.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120379839 120602186 + MGP_C3HHeJ_P0021430 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021431.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120380125 120496958 + Clasp1 protein_coding retained_intron MGP_C3HHeJ_T0021432.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120380243 120599955 + MGP_C3HHeJ_P0021432 Clasp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021433.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120380252 120600372 + MGP_C3HHeJ_P0021433 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021434.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120380252 120600372 + MGP_C3HHeJ_P0021434 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021435.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120380252 120602248 + MGP_C3HHeJ_P0021435 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021436.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120380253 120600529 + MGP_C3HHeJ_P0021436 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021437.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120380254 120501282 + Clasp1 protein_coding retained_intron MGP_C3HHeJ_T0021438.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120380270 120599955 + MGP_C3HHeJ_P0021438 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021439.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120380314 120601994 + MGP_C3HHeJ_P0021439 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021440.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120410861 120602257 + MGP_C3HHeJ_P0021440 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021441.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120411025 120605351 + MGP_C3HHeJ_P0021441 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021442.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120411025 120599902 + MGP_C3HHeJ_P0021442 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021443.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120453574 120491512 + Clasp1 protein_coding retained_intron MGP_C3HHeJ_T0021444.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120463595 120599889 + Clasp1 protein_coding processed_transcript MGP_C3HHeJ_T0021445.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120463650 120497641 + Clasp1 protein_coding processed_transcript MGP_C3HHeJ_T0021446.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120464411 120495135 + Clasp1 protein_coding processed_transcript MGP_C3HHeJ_T0021447.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120465596 120498662 + MGP_C3HHeJ_P0021447 Clasp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021448.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120476606 120599927 + MGP_C3HHeJ_P0021448 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021449.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120503944 120520302 + Clasp1 protein_coding retained_intron MGP_C3HHeJ_T0021450.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120506424 120542330 + MGP_C3HHeJ_P0021450 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021451.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120526523 120602214 + MGP_C3HHeJ_P0021451 Clasp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021452.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120529210 120531935 + Clasp1 protein_coding retained_intron MGP_C3HHeJ_T0021453.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120541629 120542349 + Clasp1 protein_coding retained_intron MGP_C3HHeJ_T0021454.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120542395 120574887 + MGP_C3HHeJ_P0021454 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021455.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120548647 120550739 + Clasp1 protein_coding retained_intron MGP_C3HHeJ_T0021456.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120597441 120602186 + Clasp1 protein_coding retained_intron MGP_C3HHeJ_T0005570.1 MGP_C3HHeJ_G0004681.1 mouse_genomes_project 1 4649192 4671846 + Gm30414 lincRNA lincRNA MGP_C3HHeJ_T0011990.1 MGP_C3HHeJ_G0010094.1 mouse_genomes_project 1 65459049 65459454 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023951.1 MGP_C3HHeJ_G0016697.1 mouse_genomes_project 1 196408289 196414214 + MGP_C3HHeJ_P0023951 Spata45 protein_coding protein_coding MGP_C3HHeJ_T0023952.1 MGP_C3HHeJ_G0016697.1 mouse_genomes_project 1 196408469 196414221 + MGP_C3HHeJ_P0023952 Spata45 protein_coding protein_coding MGP_C3HHeJ_T0005828.1 MGP_C3HHeJ_G0004878.1 mouse_genomes_project 1 134634472 134637221 - 1700037F24Rik lincRNA lincRNA MGP_C3HHeJ_T0000415.1 MGP_C3HHeJ_G0000362.1 mouse_genomes_project 1 35170967 35171110 - TEC TEC MGP_C3HHeJ_T0018699.1 MGP_C3HHeJ_G0015611.1 mouse_genomes_project 1 10084896 10210233 - MGP_C3HHeJ_P0018699 Slco5a1 protein_coding protein_coding MGP_C3HHeJ_T0018700.1 MGP_C3HHeJ_G0015611.1 mouse_genomes_project 1 10092726 10210652 - MGP_C3HHeJ_P0018700 Slco5a1 protein_coding protein_coding MGP_C3HHeJ_T0018701.1 MGP_C3HHeJ_G0015611.1 mouse_genomes_project 1 10092726 10210652 - MGP_C3HHeJ_P0018701 Slco5a1 protein_coding protein_coding MGP_C3HHeJ_T0018702.1 MGP_C3HHeJ_G0015611.1 mouse_genomes_project 1 10094369 10138803 - Slco5a1 protein_coding processed_transcript MGP_C3HHeJ_T0018703.1 MGP_C3HHeJ_G0015611.1 mouse_genomes_project 1 10194649 10210915 - Slco5a1 protein_coding processed_transcript MGP_C3HHeJ_T0000577.1 MGP_C3HHeJ_G0000524.1 mouse_genomes_project 1 128278897 128280219 - TEC TEC MGP_C3HHeJ_T0023751.1 MGP_C3HHeJ_G0016658.1 mouse_genomes_project 1 187884651 187886706 - MGP_C3HHeJ_P0023751 Ccdc185 protein_coding protein_coding MGP_C3HHeJ_T0019843.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59446855 59454551 + Nop58 protein_coding processed_transcript MGP_C3HHeJ_T0019844.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59446861 59475351 + MGP_C3HHeJ_P0019844 Nop58 protein_coding protein_coding MGP_C3HHeJ_T0019845.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59446869 59458744 + MGP_C3HHeJ_P0019845 Nop58 protein_coding protein_coding MGP_C3HHeJ_T0019846.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59446887 59454573 + Nop58 protein_coding retained_intron MGP_C3HHeJ_T0019847.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59446890 59452874 + Nop58 protein_coding retained_intron MGP_C3HHeJ_T0019848.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59446893 59482866 + MGP_C3HHeJ_P0019848 Nop58 protein_coding protein_coding MGP_C3HHeJ_T0019849.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59446905 59458719 + MGP_C3HHeJ_P0019849 Nop58 protein_coding protein_coding MGP_C3HHeJ_T0019850.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59446938 59461089 + MGP_C3HHeJ_P0019850 Nop58 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019851.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59452063 59461053 + Nop58 protein_coding retained_intron MGP_C3HHeJ_T0019852.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59454328 59468050 + Nop58 protein_coding retained_intron MGP_C3HHeJ_T0019853.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59458693 59468002 + MGP_C3HHeJ_P0019853 Nop58 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019854.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59461082 59470905 + MGP_C3HHeJ_P0019854 Nop58 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019855.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59467999 59472940 + MGP_C3HHeJ_P0019855 Nop58 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019856.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59468038 59475120 + MGP_C3HHeJ_P0019856 Nop58 protein_coding protein_coding MGP_C3HHeJ_T0019857.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59468549 59475121 + MGP_C3HHeJ_P0019857 Nop58 protein_coding protein_coding MGP_C3HHeJ_T0023846.1 MGP_C3HHeJ_G0016678.1 mouse_genomes_project 1 190634099 190647973 + MGP_C3HHeJ_P0023846 Slc30a10 protein_coding protein_coding MGP_C3HHeJ_T0005980.1 MGP_C3HHeJ_G0004998.1 mouse_genomes_project 1 196611623 196613005 + D730003I15Rik lincRNA lincRNA MGP_C3HHeJ_T0005981.1 MGP_C3HHeJ_G0004998.1 mouse_genomes_project 1 196611643 196613310 + D730003I15Rik lincRNA lincRNA MGP_C3HHeJ_T0101582.1 MGP_C3HHeJ_G0039548.1 mouse_genomes_project 1 133042609 133058849 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0022040.1 MGP_C3HHeJ_G0016290.1 mouse_genomes_project 1 137870642 137890192 - MGP_C3HHeJ_P0022040 Timm17a protein_coding protein_coding MGP_C3HHeJ_T0022041.1 MGP_C3HHeJ_G0016290.1 mouse_genomes_project 1 137877175 137886274 - Timm17a protein_coding retained_intron MGP_C3HHeJ_T0022042.1 MGP_C3HHeJ_G0016290.1 mouse_genomes_project 1 137879937 137890105 - MGP_C3HHeJ_P0022042 Timm17a protein_coding protein_coding MGP_C3HHeJ_T0022043.1 MGP_C3HHeJ_G0016290.1 mouse_genomes_project 1 137885559 137887761 - MGP_C3HHeJ_P0022043 Timm17a protein_coding protein_coding MGP_C3HHeJ_T0012255.1 MGP_C3HHeJ_G0010359.1 mouse_genomes_project 1 188479641 188480033 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098670.1 MGP_C3HHeJ_G0036864.1 mouse_genomes_project 1 175443961 175444077 - Gm24871 snRNA snRNA MGP_C3HHeJ_T0005716.1 MGP_C3HHeJ_G0004786.1 mouse_genomes_project 1 73900986 74025777 - 6030407O03Rik lincRNA lincRNA MGP_C3HHeJ_T0005717.1 MGP_C3HHeJ_G0004786.1 mouse_genomes_project 1 73900986 74164623 - 6030407O03Rik lincRNA lincRNA MGP_C3HHeJ_T0005810.1 MGP_C3HHeJ_G0004864.1 mouse_genomes_project 1 122912658 122923469 - Gm29348 lincRNA lincRNA MGP_C3HHeJ_T0018958.1 MGP_C3HHeJ_G0015675.1 mouse_genomes_project 1 31907483 31919584 - MGP_C3HHeJ_P0018958 Bag2 protein_coding protein_coding MGP_C3HHeJ_T0018959.1 MGP_C3HHeJ_G0015675.1 mouse_genomes_project 1 31908738 31910719 - Bag2 protein_coding retained_intron MGP_C3HHeJ_T0018960.1 MGP_C3HHeJ_G0015675.1 mouse_genomes_project 1 31908801 31919530 - MGP_C3HHeJ_P0018960 Bag2 protein_coding protein_coding MGP_C3HHeJ_T0018961.1 MGP_C3HHeJ_G0015675.1 mouse_genomes_project 1 31918563 31919516 - Bag2 protein_coding retained_intron MGP_C3HHeJ_T0011943.1 MGP_C3HHeJ_G0010047.1 mouse_genomes_project 1 54617353 54618344 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011850.1 MGP_C3HHeJ_G0009954.1 mouse_genomes_project 1 28862034 28862481 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098674.1 MGP_C3HHeJ_G0036868.1 mouse_genomes_project 1 180403444 180403620 + Gm25560 snRNA snRNA MGP_C3HHeJ_T0009404.1 MGP_C3HHeJ_G0007537.1 mouse_genomes_project 1 60441235 60441341 - Gm23762 miRNA miRNA MGP_C3HHeJ_T0002941.1 MGP_C3HHeJ_G0002757.1 mouse_genomes_project 1 200458290 200479177 - Gm16897 antisense antisense MGP_C3HHeJ_T0011900.1 MGP_C3HHeJ_G0010004.1 mouse_genomes_project 1 43182253 43182562 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098607.1 MGP_C3HHeJ_G0036801.1 mouse_genomes_project 1 31335319 31335429 + Gm24901 snRNA snRNA MGP_C3HHeJ_T0009451.1 MGP_C3HHeJ_G0007584.1 mouse_genomes_project 1 157190145 157190256 + Mir8114 miRNA miRNA MGP_C3HHeJ_T0011966.1 MGP_C3HHeJ_G0010070.1 mouse_genomes_project 1 60614757 60615584 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002757.1 MGP_C3HHeJ_G0002617.1 mouse_genomes_project 1 63998022 64010132 + Gm13748 antisense antisense MGP_C3HHeJ_T0023799.1 MGP_C3HHeJ_G0016667.1 mouse_genomes_project 1 189091143 189119100 + MGP_C3HHeJ_P0023799 Dusp10 protein_coding protein_coding MGP_C3HHeJ_T0023802.1 MGP_C3HHeJ_G0016667.1 mouse_genomes_project 1 189114722 189163112 + MGP_C3HHeJ_P0023802 Dusp10 protein_coding protein_coding MGP_C3HHeJ_T0023910.1 MGP_C3HHeJ_G0016690.1 mouse_genomes_project 1 195031265 195150852 + Ptpn14 protein_coding retained_intron MGP_C3HHeJ_T0023911.1 MGP_C3HHeJ_G0016690.1 mouse_genomes_project 1 195092262 195182953 + MGP_C3HHeJ_P0023911 Ptpn14 protein_coding unknown_likely_coding MGP_C3HHeJ_T0023912.1 MGP_C3HHeJ_G0016690.1 mouse_genomes_project 1 195093364 195162219 + Ptpn14 protein_coding retained_intron MGP_C3HHeJ_T0023913.1 MGP_C3HHeJ_G0016690.1 mouse_genomes_project 1 195093400 195182966 + MGP_C3HHeJ_P0023913 Ptpn14 protein_coding protein_coding MGP_C3HHeJ_T0023914.1 MGP_C3HHeJ_G0016690.1 mouse_genomes_project 1 195155285 195162706 + Ptpn14 protein_coding retained_intron MGP_C3HHeJ_T0023915.1 MGP_C3HHeJ_G0016690.1 mouse_genomes_project 1 195175146 195175921 + Ptpn14 protein_coding processed_transcript MGP_C3HHeJ_T0016750.1 MGP_C3HHeJ_G0014849.1 mouse_genomes_project 1 32343507 32356660 - Gm26788 processed_transcript antisense MGP_C3HHeJ_T0016751.1 MGP_C3HHeJ_G0014849.1 mouse_genomes_project 1 32353417 32356835 - Gm26788 processed_transcript retained_intron MGP_C3HHeJ_T0000527.1 MGP_C3HHeJ_G0000474.1 mouse_genomes_project 1 88713157 88713981 + TEC TEC MGP_C3HHeJ_T0005583.1 MGP_C3HHeJ_G0004690.1 mouse_genomes_project 1 16721022 16722063 + Gm28340 lincRNA lincRNA MGP_C3HHeJ_T0101568.1 MGP_C3HHeJ_G0039534.1 mouse_genomes_project 1 93741166 93741212 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0023894.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194487091 194631349 - MGP_C3HHeJ_P0023894 Kcnk2 protein_coding protein_coding MGP_C3HHeJ_T0023895.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194487098 194692685 - MGP_C3HHeJ_P0023895 Kcnk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023896.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194487098 194630989 - MGP_C3HHeJ_P0023896 Kcnk2 protein_coding protein_coding MGP_C3HHeJ_T0023897.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194488905 194692630 - MGP_C3HHeJ_P0023897 Kcnk2 protein_coding protein_coding MGP_C3HHeJ_T0023898.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194488914 194692625 - MGP_C3HHeJ_P0023898 Kcnk2 protein_coding protein_coding MGP_C3HHeJ_T0023899.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194488951 194630512 - MGP_C3HHeJ_P0023899 Kcnk2 protein_coding protein_coding MGP_C3HHeJ_T0023900.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194488951 194630864 - MGP_C3HHeJ_P0023900 Kcnk2 protein_coding protein_coding MGP_C3HHeJ_T0023901.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194489186 194494370 - Kcnk2 protein_coding processed_transcript MGP_C3HHeJ_T0023902.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194489223 194522844 - Kcnk2 protein_coding processed_transcript MGP_C3HHeJ_T0023903.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194625359 194634136 - Kcnk2 protein_coding processed_transcript MGP_C3HHeJ_T0000731.1 MGP_C3HHeJ_G0000675.1 mouse_genomes_project 1 183214185 183216055 + TEC TEC MGP_C3HHeJ_T0098327.1 MGP_C3HHeJ_G0036538.1 mouse_genomes_project 1 141709991 141711571 + 4930596I21Rik sense_intronic sense_intronic MGP_C3HHeJ_T0005968.1 MGP_C3HHeJ_G0004988.1 mouse_genomes_project 1 191722210 191770795 - A730004F24Rik lincRNA lincRNA MGP_C3HHeJ_T0005969.1 MGP_C3HHeJ_G0004988.1 mouse_genomes_project 1 191722254 191771004 - A730004F24Rik lincRNA lincRNA MGP_C3HHeJ_T0022868.1 MGP_C3HHeJ_G0016443.1 mouse_genomes_project 1 167671571 167680997 + MGP_C3HHeJ_P0022868 Sele protein_coding protein_coding MGP_C3HHeJ_T0005943.1 MGP_C3HHeJ_G0004969.1 mouse_genomes_project 1 187818803 187819302 + Gm37218 lincRNA lincRNA MGP_C3HHeJ_T0012003.1 MGP_C3HHeJ_G0010107.1 mouse_genomes_project 1 71696693 71696771 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005811.1 MGP_C3HHeJ_G0004865.1 mouse_genomes_project 1 122922656 122923991 + Gm29347 lincRNA lincRNA MGP_C3HHeJ_T0020776.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852194 86948380 + Armc9 protein_coding retained_intron MGP_C3HHeJ_T0020777.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852198 86914607 + Armc9 protein_coding retained_intron MGP_C3HHeJ_T0020778.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852198 86961902 + Armc9 protein_coding retained_intron MGP_C3HHeJ_T0020779.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852200 86868921 + Armc9 protein_coding retained_intron MGP_C3HHeJ_T0020780.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852212 86880730 + Armc9 protein_coding processed_transcript MGP_C3HHeJ_T0020781.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852212 86979770 + MGP_C3HHeJ_P0020781 Armc9 protein_coding protein_coding MGP_C3HHeJ_T0020782.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852213 86863226 + MGP_C3HHeJ_P0020782 Armc9 protein_coding protein_coding MGP_C3HHeJ_T0020783.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852224 86981342 + MGP_C3HHeJ_P0020783 Armc9 protein_coding protein_coding MGP_C3HHeJ_T0020784.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852229 86954555 + MGP_C3HHeJ_P0020784 Armc9 protein_coding protein_coding MGP_C3HHeJ_T0020785.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852233 86876635 + Armc9 protein_coding retained_intron MGP_C3HHeJ_T0020786.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86897287 86954458 + MGP_C3HHeJ_P0020786 Armc9 protein_coding protein_coding MGP_C3HHeJ_T0020787.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86903410 86954555 + MGP_C3HHeJ_P0020787 Armc9 protein_coding protein_coding MGP_C3HHeJ_T0020788.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86946619 86971718 + MGP_C3HHeJ_P0020788 Armc9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005743.1 MGP_C3HHeJ_G0004807.1 mouse_genomes_project 1 87901173 87901936 + lincRNA lincRNA MGP_C3HHeJ_T0009414.1 MGP_C3HHeJ_G0007547.1 mouse_genomes_project 1 74711376 74711461 + Mir26b miRNA miRNA MGP_C3HHeJ_T0012118.1 MGP_C3HHeJ_G0010222.1 mouse_genomes_project 1 122887908 122888118 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011882.1 MGP_C3HHeJ_G0009986.1 mouse_genomes_project 1 34204144 34205048 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011948.1 MGP_C3HHeJ_G0010052.1 mouse_genomes_project 1 54887970 54888863 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098263.1 MGP_C3HHeJ_G0036475.1 mouse_genomes_project 1 162811306 162811446 + Scarna3a scaRNA scaRNA MGP_C3HHeJ_T0002877.1 MGP_C3HHeJ_G0002707.1 mouse_genomes_project 1 170099474 170100129 - Gm15853 antisense antisense MGP_C3HHeJ_T0000425.1 MGP_C3HHeJ_G0000372.1 mouse_genomes_project 1 38503550 38504892 - TEC TEC MGP_C3HHeJ_T0099889.1 MGP_C3HHeJ_G0038083.1 mouse_genomes_project 1 142851206 142851348 + Gm26048 snoRNA snoRNA MGP_C3HHeJ_T0020179.1 MGP_C3HHeJ_G0015900.1 mouse_genomes_project 1 72534308 72622643 + MGP_C3HHeJ_P0020179 Xrcc5 protein_coding protein_coding MGP_C3HHeJ_T0101544.1 MGP_C3HHeJ_G0039510.1 mouse_genomes_project 1 18813718 18818783 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0022132.1 MGP_C3HHeJ_G0016307.1 mouse_genomes_project 1 138822117 138842757 - MGP_C3HHeJ_P0022132 5730559C18Rik protein_coding protein_coding MGP_C3HHeJ_T0022133.1 MGP_C3HHeJ_G0016307.1 mouse_genomes_project 1 138828852 138838864 - MGP_C3HHeJ_P0022133 5730559C18Rik protein_coding protein_coding MGP_C3HHeJ_T0022134.1 MGP_C3HHeJ_G0016307.1 mouse_genomes_project 1 138828890 138838885 - MGP_C3HHeJ_P0022134 5730559C18Rik protein_coding protein_coding MGP_C3HHeJ_T0022135.1 MGP_C3HHeJ_G0016307.1 mouse_genomes_project 1 138832137 138836237 - 5730559C18Rik protein_coding retained_intron MGP_C3HHeJ_T0022136.1 MGP_C3HHeJ_G0016307.1 mouse_genomes_project 1 138834767 138842612 - MGP_C3HHeJ_P0022136 5730559C18Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022137.1 MGP_C3HHeJ_G0016307.1 mouse_genomes_project 1 138834788 138838594 - MGP_C3HHeJ_P0022137 5730559C18Rik protein_coding protein_coding MGP_C3HHeJ_T0023381.1 MGP_C3HHeJ_G0016563.1 mouse_genomes_project 1 177462732 177464982 - MGP_C3HHeJ_P0023381 Olfr1408 protein_coding protein_coding MGP_C3HHeJ_T0023382.1 MGP_C3HHeJ_G0016563.1 mouse_genomes_project 1 177462732 177471383 - MGP_C3HHeJ_P0023382 Olfr1408 protein_coding protein_coding MGP_C3HHeJ_T0098649.1 MGP_C3HHeJ_G0036843.1 mouse_genomes_project 1 132974351 132974458 - Gm23623 snRNA snRNA MGP_C3HHeJ_T0018487.1 MGP_C3HHeJ_G0015578.1 mouse_genomes_project 1 248980 259441 - Xkr4 protein_coding processed_transcript MGP_C3HHeJ_T0018488.1 MGP_C3HHeJ_G0015578.1 mouse_genomes_project 1 249602 258729 - Xkr4 protein_coding processed_transcript MGP_C3HHeJ_T0018489.1 MGP_C3HHeJ_G0015578.1 mouse_genomes_project 1 257578 726432 - MGP_C3HHeJ_P0018489 Xkr4 protein_coding protein_coding MGP_C3HHeJ_T0019078.1 MGP_C3HHeJ_G0015694.1 mouse_genomes_project 1 34686442 34707361 - MGP_C3HHeJ_P0019078 Lman2l protein_coding protein_coding MGP_C3HHeJ_T0019079.1 MGP_C3HHeJ_G0015694.1 mouse_genomes_project 1 34688636 34712932 - MGP_C3HHeJ_P0019079 Lman2l protein_coding protein_coding MGP_C3HHeJ_T0019080.1 MGP_C3HHeJ_G0015694.1 mouse_genomes_project 1 34689765 34709533 - Lman2l protein_coding retained_intron MGP_C3HHeJ_T0019081.1 MGP_C3HHeJ_G0015694.1 mouse_genomes_project 1 34689765 34712932 - MGP_C3HHeJ_P0019081 Lman2l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019082.1 MGP_C3HHeJ_G0015694.1 mouse_genomes_project 1 34689765 34712932 - MGP_C3HHeJ_P0019082 Lman2l protein_coding protein_coding MGP_C3HHeJ_T0019083.1 MGP_C3HHeJ_G0015694.1 mouse_genomes_project 1 34691111 34694972 - MGP_C3HHeJ_P0019083 Lman2l protein_coding protein_coding MGP_C3HHeJ_T0019084.1 MGP_C3HHeJ_G0015694.1 mouse_genomes_project 1 34694997 34712932 - MGP_C3HHeJ_P0019084 Lman2l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019085.1 MGP_C3HHeJ_G0015694.1 mouse_genomes_project 1 34711409 34712918 - Lman2l protein_coding retained_intron MGP_C3HHeJ_T0020698.1 MGP_C3HHeJ_G0015995.1 mouse_genomes_project 1 84974645 85300484 - MGP_C3HHeJ_P0020698 Dner protein_coding protein_coding MGP_C3HHeJ_T0020699.1 MGP_C3HHeJ_G0015995.1 mouse_genomes_project 1 85142081 85300282 - Dner protein_coding retained_intron MGP_C3HHeJ_T0020700.1 MGP_C3HHeJ_G0015995.1 mouse_genomes_project 1 85185062 85245357 - MGP_C3HHeJ_P0020700 Dner protein_coding protein_coding MGP_C3HHeJ_T0020701.1 MGP_C3HHeJ_G0015995.1 mouse_genomes_project 1 85187351 85228735 - MGP_C3HHeJ_P0020701 Dner protein_coding protein_coding MGP_C3HHeJ_T0012249.1 MGP_C3HHeJ_G0010353.1 mouse_genomes_project 1 186454816 186455109 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011768.1 MGP_C3HHeJ_G0009872.1 mouse_genomes_project 1 4130188 4130347 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019861.1 MGP_C3HHeJ_G0015841.1 mouse_genomes_project 1 59699283 59776501 + MGP_C3HHeJ_P0019861 Fam117b protein_coding protein_coding MGP_C3HHeJ_T0019862.1 MGP_C3HHeJ_G0015841.1 mouse_genomes_project 1 59760219 59772670 + MGP_C3HHeJ_P0019862 Fam117b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019863.1 MGP_C3HHeJ_G0015841.1 mouse_genomes_project 1 59770335 59772093 + Fam117b protein_coding retained_intron MGP_C3HHeJ_T0005773.1 MGP_C3HHeJ_G0004835.1 mouse_genomes_project 1 96957645 96974257 - 4930598F16Rik lincRNA lincRNA MGP_C3HHeJ_T0000575.1 MGP_C3HHeJ_G0000522.1 mouse_genomes_project 1 127035144 127038171 - TEC TEC MGP_C3HHeJ_T0000467.1 MGP_C3HHeJ_G0000414.1 mouse_genomes_project 1 63110763 63111242 - TEC TEC MGP_C3HHeJ_T0000590.1 MGP_C3HHeJ_G0000537.1 mouse_genomes_project 1 132128634 132132475 + TEC TEC MGP_C3HHeJ_T0011995.1 MGP_C3HHeJ_G0010099.1 mouse_genomes_project 1 66773604 66776138 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020181.1 MGP_C3HHeJ_G0015902.1 mouse_genomes_project 1 72811452 72864415 + Smarcal1 protein_coding retained_intron MGP_C3HHeJ_T0020182.1 MGP_C3HHeJ_G0015902.1 mouse_genomes_project 1 72811452 72831288 + Smarcal1 protein_coding retained_intron MGP_C3HHeJ_T0020183.1 MGP_C3HHeJ_G0015902.1 mouse_genomes_project 1 72811452 72828143 + Smarcal1 protein_coding retained_intron MGP_C3HHeJ_T0020184.1 MGP_C3HHeJ_G0015902.1 mouse_genomes_project 1 72811452 72870653 + MGP_C3HHeJ_P0020184 Smarcal1 protein_coding protein_coding MGP_C3HHeJ_T0020185.1 MGP_C3HHeJ_G0015902.1 mouse_genomes_project 1 72811452 72814194 + MGP_C3HHeJ_P0020185 Smarcal1 protein_coding protein_coding MGP_C3HHeJ_T0020186.1 MGP_C3HHeJ_G0015902.1 mouse_genomes_project 1 72811452 72827703 + MGP_C3HHeJ_P0020186 Smarcal1 protein_coding protein_coding MGP_C3HHeJ_T0020187.1 MGP_C3HHeJ_G0015902.1 mouse_genomes_project 1 72811816 72870653 + MGP_C3HHeJ_P0020187 Smarcal1 protein_coding protein_coding MGP_C3HHeJ_T0020188.1 MGP_C3HHeJ_G0015902.1 mouse_genomes_project 1 72813840 72864415 + Smarcal1 protein_coding retained_intron MGP_C3HHeJ_T0020189.1 MGP_C3HHeJ_G0015902.1 mouse_genomes_project 1 72848549 72865795 + Smarcal1 protein_coding retained_intron MGP_C3HHeJ_T0020250.1 MGP_C3HHeJ_G0015917.1 mouse_genomes_project 1 74676181 74683224 + MGP_C3HHeJ_P0020250 Catip protein_coding protein_coding MGP_C3HHeJ_T0020251.1 MGP_C3HHeJ_G0015917.1 mouse_genomes_project 1 74676385 74681745 + MGP_C3HHeJ_P0020251 Catip protein_coding protein_coding MGP_C3HHeJ_T0020252.1 MGP_C3HHeJ_G0015917.1 mouse_genomes_project 1 74676461 74683301 + MGP_C3HHeJ_P0020252 Catip protein_coding protein_coding MGP_C3HHeJ_T0020253.1 MGP_C3HHeJ_G0015917.1 mouse_genomes_project 1 74678570 74680695 + Catip protein_coding retained_intron MGP_C3HHeJ_T0002853.1 MGP_C3HHeJ_G0002688.1 mouse_genomes_project 1 159626854 159628348 + 4930518J20Rik antisense antisense MGP_C3HHeJ_T0020972.1 MGP_C3HHeJ_G0016056.1 mouse_genomes_project 1 90450316 90910619 + MGP_C3HHeJ_P0020972 Agap1 protein_coding protein_coding MGP_C3HHeJ_T0020973.1 MGP_C3HHeJ_G0016056.1 mouse_genomes_project 1 90450384 90903003 + MGP_C3HHeJ_P0020973 Agap1 protein_coding protein_coding MGP_C3HHeJ_T0020974.1 MGP_C3HHeJ_G0016056.1 mouse_genomes_project 1 90450766 90455189 + Agap1 protein_coding retained_intron MGP_C3HHeJ_T0020975.1 MGP_C3HHeJ_G0016056.1 mouse_genomes_project 1 90578161 90908279 + MGP_C3HHeJ_P0020975 Agap1 protein_coding protein_coding MGP_C3HHeJ_T0020976.1 MGP_C3HHeJ_G0016056.1 mouse_genomes_project 1 90578672 90901896 + MGP_C3HHeJ_P0020976 Agap1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0005827.1 MGP_C3HHeJ_G0004877.1 mouse_genomes_project 1 134459820 134492848 + Gm26892 lincRNA lincRNA MGP_C3HHeJ_T0099849.1 MGP_C3HHeJ_G0038043.1 mouse_genomes_project 1 59453818 59453905 + Snord70 snoRNA snoRNA MGP_C3HHeJ_T0019052.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565415 34576873 + MGP_C3HHeJ_P0019052 Arid5a protein_coding protein_coding MGP_C3HHeJ_T0019053.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565436 34575958 + Arid5a protein_coding retained_intron MGP_C3HHeJ_T0019054.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565436 34577557 + Arid5a protein_coding retained_intron MGP_C3HHeJ_T0019055.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565436 34576884 + Arid5a protein_coding processed_transcript MGP_C3HHeJ_T0019056.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565436 34578741 + MGP_C3HHeJ_P0019056 Arid5a protein_coding protein_coding MGP_C3HHeJ_T0019057.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565436 34578198 + MGP_C3HHeJ_P0019057 Arid5a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019058.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565436 34581699 + MGP_C3HHeJ_P0019058 Arid5a protein_coding protein_coding MGP_C3HHeJ_T0019059.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565436 34575112 + MGP_C3HHeJ_P0019059 Arid5a protein_coding protein_coding MGP_C3HHeJ_T0019060.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565436 34578196 + MGP_C3HHeJ_P0019060 Arid5a protein_coding protein_coding MGP_C3HHeJ_T0019061.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565440 34570451 + Arid5a protein_coding retained_intron MGP_C3HHeJ_T0019062.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565461 34574249 + Arid5a protein_coding retained_intron MGP_C3HHeJ_T0019063.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565515 34577873 + MGP_C3HHeJ_P0019063 Arid5a protein_coding protein_coding MGP_C3HHeJ_T0019064.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34573674 34575806 + Arid5a protein_coding retained_intron MGP_C3HHeJ_T0019065.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34574696 34575802 + Arid5a protein_coding retained_intron MGP_C3HHeJ_T0009390.1 MGP_C3HHeJ_G0007523.1 mouse_genomes_project 1 32616641 32616720 - Mir5103 miRNA miRNA MGP_C3HHeJ_T0012254.1 MGP_C3HHeJ_G0010358.1 mouse_genomes_project 1 188423497 188424412 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012035.1 MGP_C3HHeJ_G0010139.1 mouse_genomes_project 1 87196863 87197211 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021987.1 MGP_C3HHeJ_G0016279.1 mouse_genomes_project 1 137069214 137077822 - MGP_C3HHeJ_P0021987 Mgat4e protein_coding protein_coding MGP_C3HHeJ_T0021988.1 MGP_C3HHeJ_G0016279.1 mouse_genomes_project 1 137069220 137075237 - MGP_C3HHeJ_P0021988 Mgat4e protein_coding protein_coding MGP_C3HHeJ_T0021989.1 MGP_C3HHeJ_G0016279.1 mouse_genomes_project 1 137069230 137075165 - MGP_C3HHeJ_P0021989 Mgat4e protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022011.1 MGP_C3HHeJ_G0016283.1 mouse_genomes_project 1 137518152 137531998 + MGP_C3HHeJ_P0022011 Ube2t protein_coding unknown_likely_coding MGP_C3HHeJ_T0022012.1 MGP_C3HHeJ_G0016283.1 mouse_genomes_project 1 137518252 137532214 + MGP_C3HHeJ_P0022012 Ube2t protein_coding protein_coding MGP_C3HHeJ_T0022013.1 MGP_C3HHeJ_G0016283.1 mouse_genomes_project 1 137518278 137521688 + Ube2t protein_coding retained_intron MGP_C3HHeJ_T0022014.1 MGP_C3HHeJ_G0016283.1 mouse_genomes_project 1 137528055 137532211 + MGP_C3HHeJ_P0022014 Ube2t protein_coding protein_coding MGP_C3HHeJ_T0022015.1 MGP_C3HHeJ_G0016283.1 mouse_genomes_project 1 137530005 137530907 + Ube2t protein_coding retained_intron MGP_C3HHeJ_T0002805.1 MGP_C3HHeJ_G0002652.1 mouse_genomes_project 1 120451809 120453254 - antisense antisense MGP_C3HHeJ_T0002806.1 MGP_C3HHeJ_G0002652.1 mouse_genomes_project 1 120452656 120452734 - antisense antisense MGP_C3HHeJ_T0097960.1 MGP_C3HHeJ_G0036172.1 mouse_genomes_project 1 86351284 86351388 + n-R5s215 rRNA rRNA MGP_C3HHeJ_T0016820.1 MGP_C3HHeJ_G0014876.1 mouse_genomes_project 1 149820217 149825059 - A230059L01Rik processed_transcript antisense MGP_C3HHeJ_T0016821.1 MGP_C3HHeJ_G0014876.1 mouse_genomes_project 1 149823871 149826557 - A230059L01Rik processed_transcript TEC MGP_C3HHeJ_T0000513.1 MGP_C3HHeJ_G0000460.1 mouse_genomes_project 1 85270124 85274379 - TEC TEC MGP_C3HHeJ_T0002707.1 MGP_C3HHeJ_G0002578.1 mouse_genomes_project 1 32628018 32633182 - Gm28306 antisense antisense MGP_C3HHeJ_T0000579.1 MGP_C3HHeJ_G0000526.1 mouse_genomes_project 1 129467693 129469087 + TEC TEC MGP_C3HHeJ_T0022062.1 MGP_C3HHeJ_G0016294.1 mouse_genomes_project 1 138015805 138175868 - MGP_C3HHeJ_P0022062 Nav1 protein_coding protein_coding MGP_C3HHeJ_T0022063.1 MGP_C3HHeJ_G0016294.1 mouse_genomes_project 1 138015805 138175518 - MGP_C3HHeJ_P0022063 Nav1 protein_coding protein_coding MGP_C3HHeJ_T0022064.1 MGP_C3HHeJ_G0016294.1 mouse_genomes_project 1 138019985 138198369 - MGP_C3HHeJ_P0022064 Nav1 protein_coding protein_coding MGP_C3HHeJ_T0022065.1 MGP_C3HHeJ_G0016294.1 mouse_genomes_project 1 138035709 138037242 - Nav1 protein_coding retained_intron MGP_C3HHeJ_T0022066.1 MGP_C3HHeJ_G0016294.1 mouse_genomes_project 1 138038650 138051405 - MGP_C3HHeJ_P0022066 Nav1 protein_coding protein_coding MGP_C3HHeJ_T0022067.1 MGP_C3HHeJ_G0016294.1 mouse_genomes_project 1 138041105 138044549 - Nav1 protein_coding retained_intron MGP_C3HHeJ_T0022068.1 MGP_C3HHeJ_G0016294.1 mouse_genomes_project 1 138041105 138097526 - Nav1 protein_coding retained_intron MGP_C3HHeJ_T0022069.1 MGP_C3HHeJ_G0016294.1 mouse_genomes_project 1 138041988 138097593 - Nav1 protein_coding processed_transcript MGP_C3HHeJ_T0000684.1 MGP_C3HHeJ_G0000629.1 mouse_genomes_project 1 164184076 164186366 - TEC TEC MGP_C3HHeJ_T0011930.1 MGP_C3HHeJ_G0010034.1 mouse_genomes_project 1 50534828 50535853 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018822.1 MGP_C3HHeJ_G0015641.1 mouse_genomes_project 1 18189875 18193466 + MGP_C3HHeJ_P0018822 Il17a protein_coding protein_coding MGP_C3HHeJ_T0011921.1 MGP_C3HHeJ_G0010025.1 mouse_genomes_project 1 47989514 47990525 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002736.1 MGP_C3HHeJ_G0002601.1 mouse_genomes_project 1 50357612 50361354 - Gm28319 antisense antisense MGP_C3HHeJ_T0023425.1 MGP_C3HHeJ_G0016584.1 mouse_genomes_project 1 178660482 178666099 + MGP_C3HHeJ_P0023425 Olfr429 protein_coding protein_coding MGP_C3HHeJ_T0023426.1 MGP_C3HHeJ_G0016584.1 mouse_genomes_project 1 178665156 178666099 + MGP_C3HHeJ_P0023426 Olfr429 protein_coding protein_coding MGP_C3HHeJ_T0022478.1 MGP_C3HHeJ_G0016375.1 mouse_genomes_project 1 158426245 158429521 - MGP_C3HHeJ_P0022478 Ier5 protein_coding protein_coding MGP_C3HHeJ_T0023383.1 MGP_C3HHeJ_G0016564.1 mouse_genomes_project 1 177513266 177514329 - MGP_C3HHeJ_P0023383 Olfr1406 protein_coding protein_coding MGP_C3HHeJ_T0023384.1 MGP_C3HHeJ_G0016564.1 mouse_genomes_project 1 177513993 177520392 - MGP_C3HHeJ_P0023384 Olfr1406 protein_coding protein_coding MGP_C3HHeJ_T0000421.1 MGP_C3HHeJ_G0000368.1 mouse_genomes_project 1 36052428 36054645 - TEC TEC MGP_C3HHeJ_T0009405.1 MGP_C3HHeJ_G0007538.1 mouse_genomes_project 1 62870468 62870573 + Gm44468 miRNA miRNA MGP_C3HHeJ_T0020030.1 MGP_C3HHeJ_G0015871.1 mouse_genomes_project 1 64979390 64982438 - MGP_C3HHeJ_P0020030 protein_coding protein_coding MGP_C3HHeJ_T0020514.1 MGP_C3HHeJ_G0015957.1 mouse_genomes_project 1 75739858 75765253 + MGP_C3HHeJ_P0020514 Asic4 protein_coding protein_coding MGP_C3HHeJ_T0020515.1 MGP_C3HHeJ_G0015957.1 mouse_genomes_project 1 75740121 75765256 + MGP_C3HHeJ_P0020515 Asic4 protein_coding protein_coding MGP_C3HHeJ_T0009461.1 MGP_C3HHeJ_G0007594.1 mouse_genomes_project 1 171095869 171095925 - Gm25911 miRNA miRNA MGP_C3HHeJ_T0022437.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156911234 156962478 + MGP_C3HHeJ_P0022437 Rgs8 protein_coding protein_coding MGP_C3HHeJ_T0022438.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156919151 156953175 + MGP_C3HHeJ_P0022438 Rgs8 protein_coding protein_coding MGP_C3HHeJ_T0022439.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156922686 156955140 + MGP_C3HHeJ_P0022439 Rgs8 protein_coding protein_coding MGP_C3HHeJ_T0022440.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156923373 156954932 + MGP_C3HHeJ_P0022440 Rgs8 protein_coding protein_coding MGP_C3HHeJ_T0022441.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156923411 156957733 + MGP_C3HHeJ_P0022441 Rgs8 protein_coding protein_coding MGP_C3HHeJ_T0022442.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156923692 156953225 + MGP_C3HHeJ_P0022442 Rgs8 protein_coding protein_coding MGP_C3HHeJ_T0022443.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156923756 156953230 + MGP_C3HHeJ_P0022443 Rgs8 protein_coding protein_coding MGP_C3HHeJ_T0022444.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156923772 156955101 + MGP_C3HHeJ_P0022444 Rgs8 protein_coding protein_coding MGP_C3HHeJ_T0022445.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156923808 156959822 + MGP_C3HHeJ_P0022445 Rgs8 protein_coding protein_coding MGP_C3HHeJ_T0022446.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156925588 156929943 + Rgs8 protein_coding processed_transcript MGP_C3HHeJ_T0012252.1 MGP_C3HHeJ_G0010356.1 mouse_genomes_project 1 187506777 187507770 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009421.1 MGP_C3HHeJ_G0007554.1 mouse_genomes_project 1 83376329 83376382 + Gm22396 miRNA miRNA MGP_C3HHeJ_T0098640.1 MGP_C3HHeJ_G0036834.1 mouse_genomes_project 1 109536834 109536941 - Gm24267 snRNA snRNA MGP_C3HHeJ_T0098685.1 MGP_C3HHeJ_G0036879.1 mouse_genomes_project 1 198153022 198153138 + Gm22265 snRNA snRNA MGP_C3HHeJ_T0022904.1 MGP_C3HHeJ_G0016453.1 mouse_genomes_project 1 168585594 168589478 - MGP_C3HHeJ_P0022904 Xcl1 protein_coding protein_coding MGP_C3HHeJ_T0012157.1 MGP_C3HHeJ_G0010261.1 mouse_genomes_project 1 142847899 142848320 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099875.1 MGP_C3HHeJ_G0038069.1 mouse_genomes_project 1 109656448 109656580 + Gm22438 snoRNA snoRNA MGP_C3HHeJ_T0012133.1 MGP_C3HHeJ_G0010237.1 mouse_genomes_project 1 129264187 129266037 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018736.1 MGP_C3HHeJ_G0015620.1 mouse_genomes_project 1 12612241 13059854 + MGP_C3HHeJ_P0018736 Kcnb2 protein_coding protein_coding MGP_C3HHeJ_T0018737.1 MGP_C3HHeJ_G0015620.1 mouse_genomes_project 1 12637769 13070968 + MGP_C3HHeJ_P0018737 Kcnb2 protein_coding protein_coding MGP_C3HHeJ_T0019987.1 MGP_C3HHeJ_G0015861.1 mouse_genomes_project 1 63622837 63654250 - MGP_C3HHeJ_P0019987 Mdh1b protein_coding protein_coding MGP_C3HHeJ_T0000709.1 MGP_C3HHeJ_G0000654.1 mouse_genomes_project 1 175269807 175271064 + TEC TEC MGP_C3HHeJ_T0023916.1 MGP_C3HHeJ_G0016691.1 mouse_genomes_project 1 195193314 195237732 - MGP_C3HHeJ_P0023916 Smyd2 protein_coding protein_coding MGP_C3HHeJ_T0023917.1 MGP_C3HHeJ_G0016691.1 mouse_genomes_project 1 195193316 195201825 - Smyd2 protein_coding processed_transcript MGP_C3HHeJ_T0023918.1 MGP_C3HHeJ_G0016691.1 mouse_genomes_project 1 195193464 195195195 - Smyd2 protein_coding retained_intron MGP_C3HHeJ_T0023919.1 MGP_C3HHeJ_G0016691.1 mouse_genomes_project 1 195197868 195237622 - Smyd2 protein_coding retained_intron MGP_C3HHeJ_T0020101.1 MGP_C3HHeJ_G0015885.1 mouse_genomes_project 1 66817900 66849086 - MGP_C3HHeJ_P0020101 Acadl protein_coding protein_coding MGP_C3HHeJ_T0020102.1 MGP_C3HHeJ_G0015885.1 mouse_genomes_project 1 66831527 66844159 - Acadl protein_coding processed_transcript MGP_C3HHeJ_T0012203.1 MGP_C3HHeJ_G0010307.1 mouse_genomes_project 1 162606858 162607341 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000325.1 MGP_C3HHeJ_G0000275.1 mouse_genomes_project 1 645894 648837 - TEC TEC MGP_C3HHeJ_T0099822.1 MGP_C3HHeJ_G0038016.1 mouse_genomes_project 1 8270438 8270566 - Gm24173 snoRNA snoRNA MGP_C3HHeJ_T0011836.1 MGP_C3HHeJ_G0009940.1 mouse_genomes_project 1 22888949 22889392 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101584.1 MGP_C3HHeJ_G0039550.1 mouse_genomes_project 1 137047950 137052094 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011906.1 MGP_C3HHeJ_G0010010.1 mouse_genomes_project 1 44223560 44224533 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021059.1 MGP_C3HHeJ_G0016073.1 mouse_genomes_project 1 92442091 92449879 + MGP_C3HHeJ_P0021059 Fam132b protein_coding protein_coding MGP_C3HHeJ_T0021060.1 MGP_C3HHeJ_G0016073.1 mouse_genomes_project 1 92446355 92449754 + MGP_C3HHeJ_P0021060 Fam132b protein_coding protein_coding MGP_C3HHeJ_T0000514.1 MGP_C3HHeJ_G0000461.1 mouse_genomes_project 1 85405329 85407363 - TEC TEC MGP_C3HHeJ_T0019819.1 MGP_C3HHeJ_G0015834.1 mouse_genomes_project 1 58898674 58976181 - MGP_C3HHeJ_P0019819 Als2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0019820.1 MGP_C3HHeJ_G0015834.1 mouse_genomes_project 1 58900216 58976241 - MGP_C3HHeJ_P0019820 Als2 protein_coding protein_coding MGP_C3HHeJ_T0019821.1 MGP_C3HHeJ_G0015834.1 mouse_genomes_project 1 58901348 58976103 - MGP_C3HHeJ_P0019821 Als2 protein_coding protein_coding MGP_C3HHeJ_T0019822.1 MGP_C3HHeJ_G0015834.1 mouse_genomes_project 1 58930294 58976241 - Als2 protein_coding retained_intron MGP_C3HHeJ_T0019823.1 MGP_C3HHeJ_G0015834.1 mouse_genomes_project 1 58954697 58976236 - MGP_C3HHeJ_P0019823 Als2 protein_coding protein_coding MGP_C3HHeJ_T0019824.1 MGP_C3HHeJ_G0015834.1 mouse_genomes_project 1 58955390 58958173 - Als2 protein_coding retained_intron MGP_C3HHeJ_T0005620.1 MGP_C3HHeJ_G0004722.1 mouse_genomes_project 1 40331257 40503204 + Gm29260 lincRNA lincRNA MGP_C3HHeJ_T0005621.1 MGP_C3HHeJ_G0004722.1 mouse_genomes_project 1 40481606 40483337 + Gm29260 lincRNA lincRNA MGP_C3HHeJ_T0021208.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94584548 94660646 - MGP_C3HHeJ_P0021208 Hdlbp protein_coding protein_coding MGP_C3HHeJ_T0021209.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94587160 94625211 - MGP_C3HHeJ_P0021209 Hdlbp protein_coding protein_coding MGP_C3HHeJ_T0021210.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94587400 94620324 - MGP_C3HHeJ_P0021210 Hdlbp protein_coding protein_coding MGP_C3HHeJ_T0021211.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94607978 94625177 - Hdlbp protein_coding retained_intron MGP_C3HHeJ_T0021212.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94610428 94625207 - MGP_C3HHeJ_P0021212 Hdlbp protein_coding protein_coding MGP_C3HHeJ_T0021213.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94610845 94620493 - MGP_C3HHeJ_P0021213 Hdlbp protein_coding protein_coding MGP_C3HHeJ_T0021214.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94616651 94624957 - MGP_C3HHeJ_P0021214 Hdlbp protein_coding protein_coding MGP_C3HHeJ_T0021215.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94616687 94660660 - MGP_C3HHeJ_P0021215 Hdlbp protein_coding protein_coding MGP_C3HHeJ_T0021216.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94619829 94625174 - Hdlbp protein_coding retained_intron MGP_C3HHeJ_T0021217.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94620219 94660222 - MGP_C3HHeJ_P0021217 Hdlbp protein_coding protein_coding MGP_C3HHeJ_T0021218.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94657015 94660225 - Hdlbp protein_coding retained_intron MGP_C3HHeJ_T0019402.1 MGP_C3HHeJ_G0015758.1 mouse_genomes_project 1 42771492 42783746 - MGP_C3HHeJ_P0019402 Kdelc1 protein_coding protein_coding MGP_C3HHeJ_T0019403.1 MGP_C3HHeJ_G0015758.1 mouse_genomes_project 1 42771831 42783691 - Kdelc1 protein_coding retained_intron MGP_C3HHeJ_T0019404.1 MGP_C3HHeJ_G0015758.1 mouse_genomes_project 1 42771833 42783703 - MGP_C3HHeJ_P0019404 Kdelc1 protein_coding protein_coding MGP_C3HHeJ_T0019405.1 MGP_C3HHeJ_G0015758.1 mouse_genomes_project 1 42777028 42783703 - Kdelc1 protein_coding retained_intron MGP_C3HHeJ_T0019406.1 MGP_C3HHeJ_G0015758.1 mouse_genomes_project 1 42779728 42783639 - MGP_C3HHeJ_P0019406 Kdelc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002780.1 MGP_C3HHeJ_G0002632.1 mouse_genomes_project 1 86978583 87008324 - Gm16341 antisense antisense MGP_C3HHeJ_T0000564.1 MGP_C3HHeJ_G0000511.1 mouse_genomes_project 1 123764777 123765526 + TEC TEC MGP_C3HHeJ_T0002680.1 MGP_C3HHeJ_G0002562.1 mouse_genomes_project 1 3307492 3312921 - 4732440D04Rik antisense antisense MGP_C3HHeJ_T0002681.1 MGP_C3HHeJ_G0002562.1 mouse_genomes_project 1 3310920 3312218 - 4732440D04Rik antisense antisense MGP_C3HHeJ_T0002682.1 MGP_C3HHeJ_G0002562.1 mouse_genomes_project 1 3312239 3312920 - 4732440D04Rik antisense antisense MGP_C3HHeJ_T0099870.1 MGP_C3HHeJ_G0038064.1 mouse_genomes_project 1 103620351 103620483 - Gm24122 snoRNA snoRNA MGP_C3HHeJ_T0019050.1 MGP_C3HHeJ_G0015690.1 mouse_genomes_project 1 34520616 34529412 - MGP_C3HHeJ_P0019050 Neurl3 protein_coding protein_coding MGP_C3HHeJ_T0019051.1 MGP_C3HHeJ_G0015690.1 mouse_genomes_project 1 34524836 34530624 - MGP_C3HHeJ_P0019051 Neurl3 protein_coding protein_coding MGP_C3HHeJ_T0005912.1 MGP_C3HHeJ_G0004945.1 mouse_genomes_project 1 170733100 170735647 - Gm16701 lincRNA lincRNA MGP_C3HHeJ_T0022703.1 MGP_C3HHeJ_G0016411.1 mouse_genomes_project 1 164527751 164530955 + Serpinc1 protein_coding retained_intron MGP_C3HHeJ_T0022704.1 MGP_C3HHeJ_G0016411.1 mouse_genomes_project 1 164527772 164548597 + MGP_C3HHeJ_P0022704 Serpinc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022705.1 MGP_C3HHeJ_G0016411.1 mouse_genomes_project 1 164527812 164558285 + MGP_C3HHeJ_P0022705 Serpinc1 protein_coding protein_coding MGP_C3HHeJ_T0022706.1 MGP_C3HHeJ_G0016411.1 mouse_genomes_project 1 164527854 164538778 + MGP_C3HHeJ_P0022706 Serpinc1 protein_coding protein_coding MGP_C3HHeJ_T0022707.1 MGP_C3HHeJ_G0016411.1 mouse_genomes_project 1 164533897 164548626 + MGP_C3HHeJ_P0022707 Serpinc1 protein_coding protein_coding MGP_C3HHeJ_T0022708.1 MGP_C3HHeJ_G0016411.1 mouse_genomes_project 1 164536206 164538868 + Serpinc1 protein_coding retained_intron MGP_C3HHeJ_T0022709.1 MGP_C3HHeJ_G0016411.1 mouse_genomes_project 1 164536662 164556081 + MGP_C3HHeJ_P0022709 Serpinc1 protein_coding protein_coding MGP_C3HHeJ_T0022710.1 MGP_C3HHeJ_G0016411.1 mouse_genomes_project 1 164538496 164554881 + MGP_C3HHeJ_P0022710 Serpinc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002772.1 MGP_C3HHeJ_G0002625.1 mouse_genomes_project 1 75537954 75543060 + Gm28294 antisense antisense MGP_C3HHeJ_T0021010.1 MGP_C3HHeJ_G0016064.1 mouse_genomes_project 1 92009345 92010265 + MGP_C3HHeJ_P0021010 Prlh protein_coding protein_coding MGP_C3HHeJ_T0000701.1 MGP_C3HHeJ_G0000646.1 mouse_genomes_project 1 169159636 169160670 + TEC TEC MGP_C3HHeJ_T0023438.1 MGP_C3HHeJ_G0016594.1 mouse_genomes_project 1 179019336 179026605 + MGP_C3HHeJ_P0023438 Olfr220 protein_coding protein_coding MGP_C3HHeJ_T0023439.1 MGP_C3HHeJ_G0016594.1 mouse_genomes_project 1 179025627 179026605 + MGP_C3HHeJ_P0023439 Olfr220 protein_coding protein_coding MGP_C3HHeJ_T0009384.1 MGP_C3HHeJ_G0007517.1 mouse_genomes_project 1 20880298 20880382 + Mir30c-2 miRNA miRNA MGP_C3HHeJ_T0005669.1 MGP_C3HHeJ_G0004751.1 mouse_genomes_project 1 59124080 59140710 + Gm29016 lincRNA lincRNA MGP_C3HHeJ_T0005647.1 MGP_C3HHeJ_G0004735.1 mouse_genomes_project 1 49583618 49584146 - Gm29665 lincRNA lincRNA MGP_C3HHeJ_T0011839.1 MGP_C3HHeJ_G0009943.1 mouse_genomes_project 1 24178965 24179616 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005671.1 MGP_C3HHeJ_G0004753.1 mouse_genomes_project 1 60588857 60593969 - Gm11579 lincRNA lincRNA MGP_C3HHeJ_T0022426.1 MGP_C3HHeJ_G0016364.1 mouse_genomes_project 1 156703623 156735474 - MGP_C3HHeJ_P0022426 Dhx9 protein_coding protein_coding MGP_C3HHeJ_T0022427.1 MGP_C3HHeJ_G0016364.1 mouse_genomes_project 1 156703623 156735526 - MGP_C3HHeJ_P0022427 Dhx9 protein_coding protein_coding MGP_C3HHeJ_T0022428.1 MGP_C3HHeJ_G0016364.1 mouse_genomes_project 1 156710498 156735511 - MGP_C3HHeJ_P0022428 Dhx9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022429.1 MGP_C3HHeJ_G0016364.1 mouse_genomes_project 1 156710504 156726005 - MGP_C3HHeJ_P0022429 Dhx9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022430.1 MGP_C3HHeJ_G0016364.1 mouse_genomes_project 1 156712207 156735517 - MGP_C3HHeJ_P0022430 Dhx9 protein_coding protein_coding MGP_C3HHeJ_T0022431.1 MGP_C3HHeJ_G0016364.1 mouse_genomes_project 1 156720060 156726019 - Dhx9 protein_coding retained_intron MGP_C3HHeJ_T0022432.1 MGP_C3HHeJ_G0016364.1 mouse_genomes_project 1 156724704 156735524 - Dhx9 protein_coding retained_intron MGP_C3HHeJ_T0022433.1 MGP_C3HHeJ_G0016364.1 mouse_genomes_project 1 156726142 156728416 - Dhx9 protein_coding retained_intron MGP_C3HHeJ_T0022434.1 MGP_C3HHeJ_G0016364.1 mouse_genomes_project 1 156730236 156735500 - Dhx9 protein_coding retained_intron MGP_C3HHeJ_T0012006.1 MGP_C3HHeJ_G0010110.1 mouse_genomes_project 1 72318089 72318736 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000431.1 MGP_C3HHeJ_G0000378.1 mouse_genomes_project 1 42200976 42202268 + TEC TEC MGP_C3HHeJ_T0002891.1 MGP_C3HHeJ_G0002718.1 mouse_genomes_project 1 176543055 176544055 + Gm37950 antisense antisense MGP_C3HHeJ_T0022181.1 MGP_C3HHeJ_G0016317.1 mouse_genomes_project 1 141549966 141567168 - MGP_C3HHeJ_P0022181 Lhx9 protein_coding protein_coding MGP_C3HHeJ_T0022182.1 MGP_C3HHeJ_G0016317.1 mouse_genomes_project 1 141549966 141572787 - MGP_C3HHeJ_P0022182 Lhx9 protein_coding protein_coding MGP_C3HHeJ_T0022183.1 MGP_C3HHeJ_G0016317.1 mouse_genomes_project 1 141549966 141574069 - MGP_C3HHeJ_P0022183 Lhx9 protein_coding protein_coding MGP_C3HHeJ_T0022184.1 MGP_C3HHeJ_G0016317.1 mouse_genomes_project 1 141553915 141572875 - MGP_C3HHeJ_P0022184 Lhx9 protein_coding protein_coding MGP_C3HHeJ_T0022185.1 MGP_C3HHeJ_G0016317.1 mouse_genomes_project 1 141555705 141567140 - MGP_C3HHeJ_P0022185 Lhx9 protein_coding protein_coding MGP_C3HHeJ_T0022186.1 MGP_C3HHeJ_G0016317.1 mouse_genomes_project 1 141556475 141558410 - Lhx9 protein_coding retained_intron MGP_C3HHeJ_T0022187.1 MGP_C3HHeJ_G0016317.1 mouse_genomes_project 1 141557611 141567165 - MGP_C3HHeJ_P0022187 Lhx9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000449.1 MGP_C3HHeJ_G0000396.1 mouse_genomes_project 1 58488646 58492487 + TEC TEC MGP_C3HHeJ_T0002837.1 MGP_C3HHeJ_G0002676.1 mouse_genomes_project 1 141240699 141275901 + Gm28501 antisense antisense MGP_C3HHeJ_T0011982.1 MGP_C3HHeJ_G0010086.1 mouse_genomes_project 1 63594438 63594942 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005805.1 MGP_C3HHeJ_G0004860.1 mouse_genomes_project 1 122488080 122490731 + 1700012E03Rik lincRNA lincRNA MGP_C3HHeJ_T0012086.1 MGP_C3HHeJ_G0010190.1 mouse_genomes_project 1 110569931 110571802 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009448.1 MGP_C3HHeJ_G0007581.1 mouse_genomes_project 1 140676467 140676554 + Mir181a-1 miRNA miRNA MGP_C3HHeJ_T0011832.1 MGP_C3HHeJ_G0009936.1 mouse_genomes_project 1 21074172 21075160 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099912.1 MGP_C3HHeJ_G0038106.1 mouse_genomes_project 1 175222014 175222105 + Gm25151 snoRNA snoRNA MGP_C3HHeJ_T0019527.1 MGP_C3HHeJ_G0015780.1 mouse_genomes_project 1 51867968 51889193 + MGP_C3HHeJ_P0019527 protein_coding protein_coding MGP_C3HHeJ_T0019528.1 MGP_C3HHeJ_G0015780.1 mouse_genomes_project 1 51868002 51889193 + MGP_C3HHeJ_P0019528 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019529.1 MGP_C3HHeJ_G0015780.1 mouse_genomes_project 1 51868012 51887910 + MGP_C3HHeJ_P0019529 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019530.1 MGP_C3HHeJ_G0015780.1 mouse_genomes_project 1 51868017 51888003 + protein_coding retained_intron MGP_C3HHeJ_T0019531.1 MGP_C3HHeJ_G0015780.1 mouse_genomes_project 1 51868062 51887976 + MGP_C3HHeJ_P0019531 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019532.1 MGP_C3HHeJ_G0015780.1 mouse_genomes_project 1 51878781 51889193 + protein_coding retained_intron MGP_C3HHeJ_T0019533.1 MGP_C3HHeJ_G0015780.1 mouse_genomes_project 1 51879249 51887930 + protein_coding processed_transcript MGP_C3HHeJ_T0019534.1 MGP_C3HHeJ_G0015780.1 mouse_genomes_project 1 51882446 51887301 + protein_coding retained_intron MGP_C3HHeJ_T0005863.1 MGP_C3HHeJ_G0004907.1 mouse_genomes_project 1 154149883 154153425 + Gm29188 lincRNA lincRNA MGP_C3HHeJ_T0000697.1 MGP_C3HHeJ_G0000642.1 mouse_genomes_project 1 168071780 168074062 + TEC TEC MGP_C3HHeJ_T0011841.1 MGP_C3HHeJ_G0009945.1 mouse_genomes_project 1 25734968 25735622 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005607.1 MGP_C3HHeJ_G0004712.1 mouse_genomes_project 1 34253419 34261471 - Gm33222 lincRNA lincRNA MGP_C3HHeJ_T0005608.1 MGP_C3HHeJ_G0004712.1 mouse_genomes_project 1 34253502 34261417 - Gm33222 lincRNA lincRNA MGP_C3HHeJ_T0000494.1 MGP_C3HHeJ_G0000441.1 mouse_genomes_project 1 78858959 78860438 - TEC TEC MGP_C3HHeJ_T0020875.1 MGP_C3HHeJ_G0016031.1 mouse_genomes_project 1 88281620 88286833 + MGP_C3HHeJ_P0020875 3110079O15Rik protein_coding protein_coding MGP_C3HHeJ_T0020876.1 MGP_C3HHeJ_G0016031.1 mouse_genomes_project 1 88283888 88286809 + 3110079O15Rik protein_coding processed_transcript MGP_C3HHeJ_T0022756.1 MGP_C3HHeJ_G0016419.1 mouse_genomes_project 1 165076021 165086654 + MGP_C3HHeJ_P0022756 Tnfsf18 protein_coding protein_coding MGP_C3HHeJ_T0099839.1 MGP_C3HHeJ_G0038033.1 mouse_genomes_project 1 37989280 37989390 - Snord89 snoRNA snoRNA MGP_C3HHeJ_T0098669.1 MGP_C3HHeJ_G0036863.1 mouse_genomes_project 1 174903164 174903328 + Gm26110 snRNA snRNA MGP_C3HHeJ_T0019421.1 MGP_C3HHeJ_G0015762.1 mouse_genomes_project 1 43261704 43503475 + MGP_C3HHeJ_P0019421 Gulp1 protein_coding protein_coding MGP_C3HHeJ_T0019422.1 MGP_C3HHeJ_G0015762.1 mouse_genomes_project 1 43261886 43495239 + MGP_C3HHeJ_P0019422 Gulp1 protein_coding protein_coding MGP_C3HHeJ_T0019423.1 MGP_C3HHeJ_G0015762.1 mouse_genomes_project 1 43261886 43503463 + MGP_C3HHeJ_P0019423 Gulp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019424.1 MGP_C3HHeJ_G0015762.1 mouse_genomes_project 1 43261920 43494832 + Gulp1 protein_coding processed_transcript MGP_C3HHeJ_T0019425.1 MGP_C3HHeJ_G0015762.1 mouse_genomes_project 1 43262786 43413798 + MGP_C3HHeJ_P0019425 Gulp1 protein_coding protein_coding MGP_C3HHeJ_T0019426.1 MGP_C3HHeJ_G0015762.1 mouse_genomes_project 1 43400556 43503462 + MGP_C3HHeJ_P0019426 Gulp1 protein_coding protein_coding MGP_C3HHeJ_T0019154.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35640143 35689014 + Inpp4a protein_coding processed_transcript MGP_C3HHeJ_T0019155.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35640169 35750780 + MGP_C3HHeJ_P0019155 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019156.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35640171 35643045 + Inpp4a protein_coding retained_intron MGP_C3HHeJ_T0019157.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35640193 35739651 + MGP_C3HHeJ_P0019157 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019158.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35640586 35748376 + MGP_C3HHeJ_P0019158 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019159.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35640586 35748820 + MGP_C3HHeJ_P0019159 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019160.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35697900 35743775 + MGP_C3HHeJ_P0019160 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019161.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35697900 35748556 + MGP_C3HHeJ_P0019161 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019162.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35698422 35748346 + MGP_C3HHeJ_P0019162 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019163.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35709703 35744519 + MGP_C3HHeJ_P0019163 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019164.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35709703 35744527 + MGP_C3HHeJ_P0019164 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019165.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35709707 35744524 + MGP_C3HHeJ_P0019165 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019166.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35717986 35720390 + Inpp4a protein_coding retained_intron MGP_C3HHeJ_T0018501.1 MGP_C3HHeJ_G0015582.1 mouse_genomes_project 1 1846522 1858828 - MGP_C3HHeJ_P0018501 Mrpl15 protein_coding protein_coding MGP_C3HHeJ_T0018502.1 MGP_C3HHeJ_G0015582.1 mouse_genomes_project 1 1847248 1858795 - MGP_C3HHeJ_P0018502 Mrpl15 protein_coding unknown_likely_coding MGP_C3HHeJ_T0018503.1 MGP_C3HHeJ_G0015582.1 mouse_genomes_project 1 1847701 1858816 - MGP_C3HHeJ_P0018503 Mrpl15 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018504.1 MGP_C3HHeJ_G0015582.1 mouse_genomes_project 1 1849653 1858857 - Mrpl15 protein_coding processed_transcript MGP_C3HHeJ_T0018505.1 MGP_C3HHeJ_G0015582.1 mouse_genomes_project 1 1853160 1857687 - Mrpl15 protein_coding retained_intron MGP_C3HHeJ_T0018506.1 MGP_C3HHeJ_G0015582.1 mouse_genomes_project 1 1854414 1858857 - MGP_C3HHeJ_P0018506 Mrpl15 protein_coding protein_coding MGP_C3HHeJ_T0018507.1 MGP_C3HHeJ_G0015582.1 mouse_genomes_project 1 1856678 1858810 - Mrpl15 protein_coding retained_intron MGP_C3HHeJ_T0018850.1 MGP_C3HHeJ_G0015652.1 mouse_genomes_project 1 18934374 19540246 - MGP_C3HHeJ_P0018850 Kcnq5 protein_coding protein_coding MGP_C3HHeJ_T0018851.1 MGP_C3HHeJ_G0015652.1 mouse_genomes_project 1 18934379 19540607 - MGP_C3HHeJ_P0018851 Kcnq5 protein_coding protein_coding MGP_C3HHeJ_T0018852.1 MGP_C3HHeJ_G0015652.1 mouse_genomes_project 1 18938153 19540246 - MGP_C3HHeJ_P0018852 Kcnq5 protein_coding protein_coding MGP_C3HHeJ_T0018853.1 MGP_C3HHeJ_G0015652.1 mouse_genomes_project 1 18938153 19540246 - MGP_C3HHeJ_P0018853 Kcnq5 protein_coding protein_coding MGP_C3HHeJ_T0018854.1 MGP_C3HHeJ_G0015652.1 mouse_genomes_project 1 18938153 19540246 - MGP_C3HHeJ_P0018854 Kcnq5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018855.1 MGP_C3HHeJ_G0015652.1 mouse_genomes_project 1 19010474 19540330 - Kcnq5 protein_coding retained_intron MGP_C3HHeJ_T0018856.1 MGP_C3HHeJ_G0015652.1 mouse_genomes_project 1 19052616 19151005 - MGP_C3HHeJ_P0018856 Kcnq5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0018857.1 MGP_C3HHeJ_G0015652.1 mouse_genomes_project 1 19131450 19431574 - Kcnq5 protein_coding processed_transcript MGP_C3HHeJ_T0011873.1 MGP_C3HHeJ_G0009977.1 mouse_genomes_project 1 32831335 32831570 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012051.1 MGP_C3HHeJ_G0010155.1 mouse_genomes_project 1 95415990 95416832 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011963.1 MGP_C3HHeJ_G0010067.1 mouse_genomes_project 1 60357924 60358341 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011977.1 MGP_C3HHeJ_G0010081.1 mouse_genomes_project 1 62501930 62502813 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012081.1 MGP_C3HHeJ_G0010185.1 mouse_genomes_project 1 108579630 108580649 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018511.1 MGP_C3HHeJ_G0015584.1 mouse_genomes_project 1 1881430 1964836 + MGP_C3HHeJ_P0018511 Gm37988 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000328.1 MGP_C3HHeJ_G0000278.1 mouse_genomes_project 1 1425346 1426830 - TEC TEC MGP_C3HHeJ_T0023831.1 MGP_C3HHeJ_G0016676.1 mouse_genomes_project 1 190500886 190531742 + MGP_C3HHeJ_P0023831 protein_coding protein_coding MGP_C3HHeJ_T0023832.1 MGP_C3HHeJ_G0016676.1 mouse_genomes_project 1 190500910 190516925 + MGP_C3HHeJ_P0023832 protein_coding protein_coding MGP_C3HHeJ_T0023833.1 MGP_C3HHeJ_G0016676.1 mouse_genomes_project 1 190500917 190529604 + MGP_C3HHeJ_P0023833 protein_coding protein_coding MGP_C3HHeJ_T0023834.1 MGP_C3HHeJ_G0016676.1 mouse_genomes_project 1 190500944 190518334 + protein_coding processed_transcript MGP_C3HHeJ_T0023835.1 MGP_C3HHeJ_G0016676.1 mouse_genomes_project 1 190508132 190529449 + MGP_C3HHeJ_P0023835 protein_coding unknown_likely_coding MGP_C3HHeJ_T0022634.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 161784972 162114699 + MGP_C3HHeJ_P0022634 Astn1 protein_coding protein_coding MGP_C3HHeJ_T0022635.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 161785003 162114701 + MGP_C3HHeJ_P0022635 Astn1 protein_coding protein_coding MGP_C3HHeJ_T0022636.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 161785038 162035745 + MGP_C3HHeJ_P0022636 Astn1 protein_coding protein_coding MGP_C3HHeJ_T0022637.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 161786235 162034337 + MGP_C3HHeJ_P0022637 Astn1 protein_coding protein_coding MGP_C3HHeJ_T0022638.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 161786248 162102462 + MGP_C3HHeJ_P0022638 Astn1 protein_coding protein_coding MGP_C3HHeJ_T0022639.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 161936822 161947949 + Astn1 protein_coding processed_transcript MGP_C3HHeJ_T0022640.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 161981390 162021474 + MGP_C3HHeJ_P0022640 Astn1 protein_coding protein_coding MGP_C3HHeJ_T0022641.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 162021224 162033506 + Astn1 protein_coding retained_intron MGP_C3HHeJ_T0022642.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 162078464 162090542 + MGP_C3HHeJ_P0022642 Astn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022643.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 162078612 162107191 + MGP_C3HHeJ_P0022643 Astn1 protein_coding protein_coding MGP_C3HHeJ_T0022644.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 162101769 162111452 + Astn1 protein_coding processed_transcript MGP_C3HHeJ_T0019759.1 MGP_C3HHeJ_G0015824.1 mouse_genomes_project 1 58142008 58207299 - MGP_C3HHeJ_P0019759 Fam126b protein_coding protein_coding MGP_C3HHeJ_T0019760.1 MGP_C3HHeJ_G0015824.1 mouse_genomes_project 1 58146223 58207242 - MGP_C3HHeJ_P0019760 Fam126b protein_coding protein_coding MGP_C3HHeJ_T0019761.1 MGP_C3HHeJ_G0015824.1 mouse_genomes_project 1 58146962 58185927 - MGP_C3HHeJ_P0019761 Fam126b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019762.1 MGP_C3HHeJ_G0015824.1 mouse_genomes_project 1 58148302 58207167 - MGP_C3HHeJ_P0019762 Fam126b protein_coding protein_coding MGP_C3HHeJ_T0019763.1 MGP_C3HHeJ_G0015824.1 mouse_genomes_project 1 58171645 58207251 - MGP_C3HHeJ_P0019763 Fam126b protein_coding protein_coding MGP_C3HHeJ_T0019764.1 MGP_C3HHeJ_G0015824.1 mouse_genomes_project 1 58176791 58207240 - Fam126b protein_coding processed_transcript MGP_C3HHeJ_T0019765.1 MGP_C3HHeJ_G0015824.1 mouse_genomes_project 1 58176818 58207253 - Fam126b protein_coding retained_intron MGP_C3HHeJ_T0019766.1 MGP_C3HHeJ_G0015824.1 mouse_genomes_project 1 58182403 58185193 - Fam126b protein_coding retained_intron MGP_C3HHeJ_T0019767.1 MGP_C3HHeJ_G0015824.1 mouse_genomes_project 1 58185576 58207273 - Fam126b protein_coding retained_intron MGP_C3HHeJ_T0012148.1 MGP_C3HHeJ_G0010252.1 mouse_genomes_project 1 139452771 139453502 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019014.1 MGP_C3HHeJ_G0015682.1 mouse_genomes_project 1 32687956 32694660 + MGP_C3HHeJ_P0019014 protein_coding protein_coding MGP_C3HHeJ_T0019015.1 MGP_C3HHeJ_G0015682.1 mouse_genomes_project 1 32687967 32691723 + MGP_C3HHeJ_P0019015 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005989.1 MGP_C3HHeJ_G0005005.1 mouse_genomes_project 1 199683739 199694309 - 4930503O07Rik lincRNA lincRNA MGP_C3HHeJ_T0000601.1 MGP_C3HHeJ_G0000548.1 mouse_genomes_project 1 135401727 135403536 - TEC TEC MGP_C3HHeJ_T0009436.1 MGP_C3HHeJ_G0007569.1 mouse_genomes_project 1 99916455 99916565 + Gm26134 miRNA miRNA MGP_C3HHeJ_T0009433.1 MGP_C3HHeJ_G0007566.1 mouse_genomes_project 1 94525474 94525602 + Mir6345 miRNA miRNA MGP_C3HHeJ_T0101080.1 MGP_C3HHeJ_G0039274.1 mouse_genomes_project 1 35056465 35056775 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101081.1 MGP_C3HHeJ_G0039274.1 mouse_genomes_project 1 35056620 35057477 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0020118.1 MGP_C3HHeJ_G0015889.1 mouse_genomes_project 1 68116191 69262061 - MGP_C3HHeJ_P0020118 Erbb4 protein_coding protein_coding MGP_C3HHeJ_T0020119.1 MGP_C3HHeJ_G0015889.1 mouse_genomes_project 1 68116191 69262364 - MGP_C3HHeJ_P0020119 Erbb4 protein_coding protein_coding MGP_C3HHeJ_T0020120.1 MGP_C3HHeJ_G0015889.1 mouse_genomes_project 1 68341357 69262061 - MGP_C3HHeJ_P0020120 Erbb4 protein_coding protein_coding MGP_C3HHeJ_T0020121.1 MGP_C3HHeJ_G0015889.1 mouse_genomes_project 1 68375225 68383454 - Erbb4 protein_coding processed_transcript MGP_C3HHeJ_T0020122.1 MGP_C3HHeJ_G0015889.1 mouse_genomes_project 1 68383285 68416455 - Erbb4 protein_coding retained_intron MGP_C3HHeJ_T0000653.1 MGP_C3HHeJ_G0000598.1 mouse_genomes_project 1 156146798 156147236 + TEC TEC MGP_C3HHeJ_T0012270.1 MGP_C3HHeJ_G0010374.1 mouse_genomes_project 1 197416800 197417032 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005580.1 MGP_C3HHeJ_G0004687.1 mouse_genomes_project 1 14527685 14532974 + Gm28783 lincRNA lincRNA MGP_C3HHeJ_T0021926.1 MGP_C3HHeJ_G0016263.1 mouse_genomes_project 1 136402750 136406879 - Optc protein_coding retained_intron MGP_C3HHeJ_T0021927.1 MGP_C3HHeJ_G0016263.1 mouse_genomes_project 1 136402750 136413774 - MGP_C3HHeJ_P0021927 Optc protein_coding protein_coding MGP_C3HHeJ_T0021928.1 MGP_C3HHeJ_G0016263.1 mouse_genomes_project 1 136402751 136414601 - MGP_C3HHeJ_P0021928 Optc protein_coding protein_coding MGP_C3HHeJ_T0021929.1 MGP_C3HHeJ_G0016263.1 mouse_genomes_project 1 136403250 136413728 - MGP_C3HHeJ_P0021929 Optc protein_coding protein_coding MGP_C3HHeJ_T0021930.1 MGP_C3HHeJ_G0016263.1 mouse_genomes_project 1 136406385 136413604 - MGP_C3HHeJ_P0021930 Optc protein_coding protein_coding MGP_C3HHeJ_T0021578.1 MGP_C3HHeJ_G0016188.1 mouse_genomes_project 1 129428016 129613423 + Mgat5 protein_coding retained_intron MGP_C3HHeJ_T0021579.1 MGP_C3HHeJ_G0016188.1 mouse_genomes_project 1 129428019 129717331 + MGP_C3HHeJ_P0021579 Mgat5 protein_coding protein_coding MGP_C3HHeJ_T0021580.1 MGP_C3HHeJ_G0016188.1 mouse_genomes_project 1 129428029 129623032 + Mgat5 protein_coding retained_intron MGP_C3HHeJ_T0021581.1 MGP_C3HHeJ_G0016188.1 mouse_genomes_project 1 129532122 129712726 + MGP_C3HHeJ_P0021581 Mgat5 protein_coding protein_coding MGP_C3HHeJ_T0000778.1 MGP_C3HHeJ_G0000720.1 mouse_genomes_project 1 200516227 200518951 + TEC TEC MGP_C3HHeJ_T0019385.1 MGP_C3HHeJ_G0015755.1 mouse_genomes_project 1 42665274 42675873 - MGP_C3HHeJ_P0019385 Mettl21c protein_coding protein_coding MGP_C3HHeJ_T0019386.1 MGP_C3HHeJ_G0015755.1 mouse_genomes_project 1 42665801 42673335 - Mettl21c protein_coding processed_transcript MGP_C3HHeJ_T0019387.1 MGP_C3HHeJ_G0015755.1 mouse_genomes_project 1 42666376 42675901 - Mettl21c protein_coding retained_intron MGP_C3HHeJ_T0022517.1 MGP_C3HHeJ_G0016382.1 mouse_genomes_project 1 159128171 159131566 - Qsox1 protein_coding retained_intron MGP_C3HHeJ_T0022518.1 MGP_C3HHeJ_G0016382.1 mouse_genomes_project 1 159130300 159165160 - MGP_C3HHeJ_P0022518 Qsox1 protein_coding protein_coding MGP_C3HHeJ_T0022519.1 MGP_C3HHeJ_G0016382.1 mouse_genomes_project 1 159130301 159165122 - MGP_C3HHeJ_P0022519 Qsox1 protein_coding protein_coding MGP_C3HHeJ_T0022520.1 MGP_C3HHeJ_G0016382.1 mouse_genomes_project 1 159130304 159165115 - MGP_C3HHeJ_P0022520 Qsox1 protein_coding protein_coding MGP_C3HHeJ_T0022521.1 MGP_C3HHeJ_G0016382.1 mouse_genomes_project 1 159132061 159134137 - Qsox1 protein_coding processed_transcript MGP_C3HHeJ_T0022522.1 MGP_C3HHeJ_G0016382.1 mouse_genomes_project 1 159146300 159165091 - Qsox1 protein_coding retained_intron MGP_C3HHeJ_T0022523.1 MGP_C3HHeJ_G0016382.1 mouse_genomes_project 1 159146474 159147549 - Qsox1 protein_coding retained_intron MGP_C3HHeJ_T0022524.1 MGP_C3HHeJ_G0016382.1 mouse_genomes_project 1 159153592 159165109 - Qsox1 protein_coding retained_intron MGP_C3HHeJ_T0005855.1 MGP_C3HHeJ_G0004900.1 mouse_genomes_project 1 141602300 141602978 - 1700019P21Rik lincRNA lincRNA MGP_C3HHeJ_T0000440.1 MGP_C3HHeJ_G0000387.1 mouse_genomes_project 1 53588303 53590936 - TEC TEC MGP_C3HHeJ_T0023617.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185190340 185193402 - Psen2 protein_coding processed_transcript MGP_C3HHeJ_T0023618.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185190340 185219693 - MGP_C3HHeJ_P0023618 Psen2 protein_coding protein_coding MGP_C3HHeJ_T0023619.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185190340 185216531 - MGP_C3HHeJ_P0023619 Psen2 protein_coding protein_coding MGP_C3HHeJ_T0023620.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185190342 185192905 - Psen2 protein_coding retained_intron MGP_C3HHeJ_T0023621.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185190342 185209347 - MGP_C3HHeJ_P0023621 Psen2 protein_coding protein_coding MGP_C3HHeJ_T0023622.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185190725 185193399 - Psen2 protein_coding processed_transcript MGP_C3HHeJ_T0023623.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185190779 185211547 - MGP_C3HHeJ_P0023623 Psen2 protein_coding protein_coding MGP_C3HHeJ_T0023624.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185190782 185209154 - MGP_C3HHeJ_P0023624 Psen2 protein_coding protein_coding MGP_C3HHeJ_T0023625.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185190804 185193362 - Psen2 protein_coding processed_transcript MGP_C3HHeJ_T0023626.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185195860 185219637 - Psen2 protein_coding retained_intron MGP_C3HHeJ_T0023627.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185198510 185202473 - Psen2 protein_coding retained_intron MGP_C3HHeJ_T0023628.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185209034 185226831 - MGP_C3HHeJ_P0023628 Psen2 protein_coding protein_coding MGP_C3HHeJ_T0021918.1 MGP_C3HHeJ_G0016262.1 mouse_genomes_project 1 136194254 136301652 - MGP_C3HHeJ_P0021918 Atp2b4 protein_coding protein_coding MGP_C3HHeJ_T0021919.1 MGP_C3HHeJ_G0016262.1 mouse_genomes_project 1 136196515 136196720 - MGP_C3HHeJ_P0021919 Atp2b4 protein_coding protein_coding MGP_C3HHeJ_T0021920.1 MGP_C3HHeJ_G0016262.1 mouse_genomes_project 1 136197659 136253748 - MGP_C3HHeJ_P0021920 Atp2b4 protein_coding protein_coding MGP_C3HHeJ_T0021921.1 MGP_C3HHeJ_G0016262.1 mouse_genomes_project 1 136197659 136253748 - MGP_C3HHeJ_P0021921 Atp2b4 protein_coding protein_coding MGP_C3HHeJ_T0021922.1 MGP_C3HHeJ_G0016262.1 mouse_genomes_project 1 136201310 136253682 - MGP_C3HHeJ_P0021922 Atp2b4 protein_coding protein_coding MGP_C3HHeJ_T0021923.1 MGP_C3HHeJ_G0016262.1 mouse_genomes_project 1 136208911 136253282 - MGP_C3HHeJ_P0021923 Atp2b4 protein_coding protein_coding MGP_C3HHeJ_T0021924.1 MGP_C3HHeJ_G0016262.1 mouse_genomes_project 1 136211253 136212860 - Atp2b4 protein_coding retained_intron MGP_C3HHeJ_T0021925.1 MGP_C3HHeJ_G0016262.1 mouse_genomes_project 1 136253700 136301647 - Atp2b4 protein_coding processed_transcript MGP_C3HHeJ_T0000573.1 MGP_C3HHeJ_G0000520.1 mouse_genomes_project 1 126001369 126004231 - TEC TEC MGP_C3HHeJ_T0020361.1 MGP_C3HHeJ_G0015940.1 mouse_genomes_project 1 75415158 75423240 - MGP_C3HHeJ_P0020361 Cnppd1 protein_coding protein_coding MGP_C3HHeJ_T0020362.1 MGP_C3HHeJ_G0015940.1 mouse_genomes_project 1 75416373 75422291 - MGP_C3HHeJ_P0020362 Cnppd1 protein_coding protein_coding MGP_C3HHeJ_T0020363.1 MGP_C3HHeJ_G0015940.1 mouse_genomes_project 1 75416376 75419475 - Cnppd1 protein_coding retained_intron MGP_C3HHeJ_T0020364.1 MGP_C3HHeJ_G0015940.1 mouse_genomes_project 1 75416376 75423299 - MGP_C3HHeJ_P0020364 Cnppd1 protein_coding protein_coding MGP_C3HHeJ_T0020365.1 MGP_C3HHeJ_G0015940.1 mouse_genomes_project 1 75417390 75418462 - Cnppd1 protein_coding retained_intron MGP_C3HHeJ_T0020366.1 MGP_C3HHeJ_G0015940.1 mouse_genomes_project 1 75417697 75418407 - Cnppd1 protein_coding retained_intron MGP_C3HHeJ_T0020367.1 MGP_C3HHeJ_G0015940.1 mouse_genomes_project 1 75419945 75422403 - MGP_C3HHeJ_P0020367 Cnppd1 protein_coding protein_coding MGP_C3HHeJ_T0020368.1 MGP_C3HHeJ_G0015940.1 mouse_genomes_project 1 75420195 75423313 - MGP_C3HHeJ_P0020368 Cnppd1 protein_coding protein_coding MGP_C3HHeJ_T0022515.1 MGP_C3HHeJ_G0016381.1 mouse_genomes_project 1 159048579 159094966 - MGP_C3HHeJ_P0022515 Lhx4 protein_coding protein_coding MGP_C3HHeJ_T0022516.1 MGP_C3HHeJ_G0016381.1 mouse_genomes_project 1 159056242 159104703 - MGP_C3HHeJ_P0022516 Lhx4 protein_coding protein_coding MGP_C3HHeJ_T0023473.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180477766 180509202 + MGP_C3HHeJ_P0023473 Exo1 protein_coding protein_coding MGP_C3HHeJ_T0023474.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180477979 180484859 + MGP_C3HHeJ_P0023474 Exo1 protein_coding protein_coding MGP_C3HHeJ_T0023475.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180477981 180487866 + MGP_C3HHeJ_P0023475 Exo1 protein_coding protein_coding MGP_C3HHeJ_T0023476.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180477998 180487888 + MGP_C3HHeJ_P0023476 Exo1 protein_coding protein_coding MGP_C3HHeJ_T0023477.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180478364 180487884 + MGP_C3HHeJ_P0023477 Exo1 protein_coding protein_coding MGP_C3HHeJ_T0023478.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180488685 180496714 + MGP_C3HHeJ_P0023478 Exo1 protein_coding protein_coding MGP_C3HHeJ_T0023479.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180497164 180504434 + MGP_C3HHeJ_P0023479 Exo1 protein_coding protein_coding MGP_C3HHeJ_T0023480.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180499945 180504251 + Exo1 protein_coding retained_intron MGP_C3HHeJ_T0023481.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180500083 180501911 + MGP_C3HHeJ_P0023481 Exo1 protein_coding protein_coding MGP_C3HHeJ_T0023482.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180503282 180504446 + Exo1 protein_coding processed_transcript MGP_C3HHeJ_T0009394.1 MGP_C3HHeJ_G0007527.1 mouse_genomes_project 1 34948671 34948746 + Gm24133 miRNA miRNA MGP_C3HHeJ_T0005935.1 MGP_C3HHeJ_G0004965.1 mouse_genomes_project 1 186719026 186742419 + lincRNA lincRNA MGP_C3HHeJ_T0005936.1 MGP_C3HHeJ_G0004965.1 mouse_genomes_project 1 186719052 186731781 + lincRNA lincRNA MGP_C3HHeJ_T0005947.1 MGP_C3HHeJ_G0004973.1 mouse_genomes_project 1 188634521 188635055 + Gm33973 lincRNA lincRNA MGP_C3HHeJ_T0021896.1 MGP_C3HHeJ_G0016257.1 mouse_genomes_project 1 136088222 136095416 - MGP_C3HHeJ_P0021896 Snrpe protein_coding protein_coding MGP_C3HHeJ_T0021897.1 MGP_C3HHeJ_G0016257.1 mouse_genomes_project 1 136088240 136095246 - MGP_C3HHeJ_P0021897 Snrpe protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021898.1 MGP_C3HHeJ_G0016257.1 mouse_genomes_project 1 136090431 136095448 - MGP_C3HHeJ_P0021898 Snrpe protein_coding protein_coding MGP_C3HHeJ_T0021899.1 MGP_C3HHeJ_G0016257.1 mouse_genomes_project 1 136090867 136095124 - MGP_C3HHeJ_P0021899 Snrpe protein_coding protein_coding MGP_C3HHeJ_T0021900.1 MGP_C3HHeJ_G0016257.1 mouse_genomes_project 1 136093205 136095414 - MGP_C3HHeJ_P0021900 Snrpe protein_coding protein_coding MGP_C3HHeJ_T0022873.1 MGP_C3HHeJ_G0016445.1 mouse_genomes_project 1 167749701 167788160 + MGP_C3HHeJ_P0022873 Selp protein_coding protein_coding MGP_C3HHeJ_T0022874.1 MGP_C3HHeJ_G0016445.1 mouse_genomes_project 1 167776334 167777809 + Selp protein_coding retained_intron MGP_C3HHeJ_T0022875.1 MGP_C3HHeJ_G0016445.1 mouse_genomes_project 1 167776893 167787275 + MGP_C3HHeJ_P0022875 Selp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022876.1 MGP_C3HHeJ_G0016445.1 mouse_genomes_project 1 167779718 167788145 + Selp protein_coding retained_intron MGP_C3HHeJ_T0022877.1 MGP_C3HHeJ_G0016445.1 mouse_genomes_project 1 167783714 167787288 + Selp protein_coding retained_intron MGP_C3HHeJ_T0005898.1 MGP_C3HHeJ_G0004934.1 mouse_genomes_project 1 168294314 168317559 - lincRNA lincRNA MGP_C3HHeJ_T0005933.1 MGP_C3HHeJ_G0004964.1 mouse_genomes_project 1 186270841 186273354 + A430110L20Rik lincRNA lincRNA MGP_C3HHeJ_T0005934.1 MGP_C3HHeJ_G0004964.1 mouse_genomes_project 1 186270931 186273346 + A430110L20Rik lincRNA lincRNA MGP_C3HHeJ_T0023248.1 MGP_C3HHeJ_G0016528.1 mouse_genomes_project 1 175444391 175445663 + MGP_C3HHeJ_P0023248 Alyref2 protein_coding protein_coding MGP_C3HHeJ_T0101589.1 MGP_C3HHeJ_G0039555.1 mouse_genomes_project 1 164737664 164806470 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0021137.1 MGP_C3HHeJ_G0016093.1 mouse_genomes_project 1 94020794 94062186 - MGP_C3HHeJ_P0021137 Ankmy1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0021138.1 MGP_C3HHeJ_G0016093.1 mouse_genomes_project 1 94030120 94062509 - MGP_C3HHeJ_P0021138 Ankmy1 protein_coding protein_coding MGP_C3HHeJ_T0021139.1 MGP_C3HHeJ_G0016093.1 mouse_genomes_project 1 94030120 94062509 - MGP_C3HHeJ_P0021139 Ankmy1 protein_coding protein_coding MGP_C3HHeJ_T0011781.1 MGP_C3HHeJ_G0009885.1 mouse_genomes_project 1 5948885 5949225 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000333.1 MGP_C3HHeJ_G0000283.1 mouse_genomes_project 1 2920428 2922197 - TEC TEC MGP_C3HHeJ_T0020271.1 MGP_C3HHeJ_G0015921.1 mouse_genomes_project 1 74755830 74829941 - MGP_C3HHeJ_P0020271 Usp37 protein_coding protein_coding MGP_C3HHeJ_T0020272.1 MGP_C3HHeJ_G0015921.1 mouse_genomes_project 1 74758076 74870949 - MGP_C3HHeJ_P0020272 Usp37 protein_coding protein_coding MGP_C3HHeJ_T0020273.1 MGP_C3HHeJ_G0015921.1 mouse_genomes_project 1 74759459 74791959 - Usp37 protein_coding processed_transcript MGP_C3HHeJ_T0020274.1 MGP_C3HHeJ_G0015921.1 mouse_genomes_project 1 74769773 74829923 - Usp37 protein_coding retained_intron MGP_C3HHeJ_T0020275.1 MGP_C3HHeJ_G0015921.1 mouse_genomes_project 1 74820048 74829944 - MGP_C3HHeJ_P0020275 Usp37 protein_coding protein_coding MGP_C3HHeJ_T0020276.1 MGP_C3HHeJ_G0015921.1 mouse_genomes_project 1 74824202 74829929 - Usp37 protein_coding retained_intron MGP_C3HHeJ_T0020277.1 MGP_C3HHeJ_G0015921.1 mouse_genomes_project 1 74824286 74830421 - Usp37 protein_coding processed_transcript MGP_C3HHeJ_T0005873.1 MGP_C3HHeJ_G0004915.1 mouse_genomes_project 1 157556162 157570049 - 4930452N14Rik lincRNA lincRNA MGP_C3HHeJ_T0002937.1 MGP_C3HHeJ_G0002753.1 mouse_genomes_project 1 198265975 198267299 + Gm15867 antisense antisense MGP_C3HHeJ_T0000688.1 MGP_C3HHeJ_G0000633.1 mouse_genomes_project 1 164462535 164463428 + TEC TEC MGP_C3HHeJ_T0019449.1 MGP_C3HHeJ_G0015767.1 mouse_genomes_project 1 44638554 44656146 - MGP_C3HHeJ_P0019449 Slc40a1 protein_coding protein_coding MGP_C3HHeJ_T0019450.1 MGP_C3HHeJ_G0015767.1 mouse_genomes_project 1 44645735 44656173 - Slc40a1 protein_coding retained_intron MGP_C3HHeJ_T0019451.1 MGP_C3HHeJ_G0015767.1 mouse_genomes_project 1 44649477 44653873 - Slc40a1 protein_coding processed_transcript MGP_C3HHeJ_T0019452.1 MGP_C3HHeJ_G0015767.1 mouse_genomes_project 1 44649485 44655826 - Slc40a1 protein_coding processed_transcript MGP_C3HHeJ_T0019453.1 MGP_C3HHeJ_G0015767.1 mouse_genomes_project 1 44651776 44657083 - MGP_C3HHeJ_P0019453 Slc40a1 protein_coding protein_coding MGP_C3HHeJ_T0019454.1 MGP_C3HHeJ_G0015767.1 mouse_genomes_project 1 44651776 44657083 - MGP_C3HHeJ_P0019454 Slc40a1 protein_coding protein_coding MGP_C3HHeJ_T0019455.1 MGP_C3HHeJ_G0015767.1 mouse_genomes_project 1 44651776 44657083 - MGP_C3HHeJ_P0019455 Slc40a1 protein_coding protein_coding MGP_C3HHeJ_T0019456.1 MGP_C3HHeJ_G0015767.1 mouse_genomes_project 1 44654295 44657087 - Slc40a1 protein_coding retained_intron MGP_C3HHeJ_T0023213.1 MGP_C3HHeJ_G0016520.1 mouse_genomes_project 1 175251624 175259027 - Nit1 protein_coding retained_intron MGP_C3HHeJ_T0023214.1 MGP_C3HHeJ_G0016520.1 mouse_genomes_project 1 175251624 175259174 - MGP_C3HHeJ_P0023214 Nit1 protein_coding protein_coding MGP_C3HHeJ_T0023215.1 MGP_C3HHeJ_G0016520.1 mouse_genomes_project 1 175254183 175259192 - MGP_C3HHeJ_P0023215 Nit1 protein_coding protein_coding MGP_C3HHeJ_T0023216.1 MGP_C3HHeJ_G0016520.1 mouse_genomes_project 1 175254941 175259186 - Nit1 protein_coding retained_intron MGP_C3HHeJ_T0023217.1 MGP_C3HHeJ_G0016520.1 mouse_genomes_project 1 175255852 175259191 - MGP_C3HHeJ_P0023217 Nit1 protein_coding protein_coding MGP_C3HHeJ_T0023218.1 MGP_C3HHeJ_G0016520.1 mouse_genomes_project 1 175257385 175259171 - MGP_C3HHeJ_P0023218 Nit1 protein_coding protein_coding MGP_C3HHeJ_T0023219.1 MGP_C3HHeJ_G0016520.1 mouse_genomes_project 1 175257440 175258010 - Nit1 protein_coding retained_intron MGP_C3HHeJ_T0023220.1 MGP_C3HHeJ_G0016520.1 mouse_genomes_project 1 175257763 175259191 - MGP_C3HHeJ_P0023220 Nit1 protein_coding protein_coding MGP_C3HHeJ_T0011933.1 MGP_C3HHeJ_G0010037.1 mouse_genomes_project 1 51534397 51535796 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005742.1 MGP_C3HHeJ_G0004806.1 mouse_genomes_project 1 86661199 86675789 - Gm28100 lincRNA lincRNA MGP_C3HHeJ_T0012242.1 MGP_C3HHeJ_G0010346.1 mouse_genomes_project 1 183648638 183649112 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020594.1 MGP_C3HHeJ_G0015972.1 mouse_genomes_project 1 79869003 79874456 - MGP_C3HHeJ_P0020594 Scg2 protein_coding protein_coding MGP_C3HHeJ_T0020595.1 MGP_C3HHeJ_G0015972.1 mouse_genomes_project 1 79869003 79874378 - MGP_C3HHeJ_P0020595 Scg2 protein_coding protein_coding MGP_C3HHeJ_T0022621.1 MGP_C3HHeJ_G0016398.1 mouse_genomes_project 1 160802353 160878372 + MGP_C3HHeJ_P0022621 BC026585 protein_coding protein_coding MGP_C3HHeJ_T0022622.1 MGP_C3HHeJ_G0016398.1 mouse_genomes_project 1 160840730 160878489 + MGP_C3HHeJ_P0022622 BC026585 protein_coding protein_coding MGP_C3HHeJ_T0022623.1 MGP_C3HHeJ_G0016398.1 mouse_genomes_project 1 160846421 160856320 + MGP_C3HHeJ_P0022623 BC026585 protein_coding protein_coding MGP_C3HHeJ_T0022624.1 MGP_C3HHeJ_G0016398.1 mouse_genomes_project 1 160857901 160882305 + MGP_C3HHeJ_P0022624 BC026585 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002901.1 MGP_C3HHeJ_G0002727.1 mouse_genomes_project 1 185733265 185747403 - Gm37768 antisense antisense MGP_C3HHeJ_T0022509.1 MGP_C3HHeJ_G0016380.1 mouse_genomes_project 1 158906277 158920446 + MGP_C3HHeJ_P0022509 Acbd6 protein_coding protein_coding MGP_C3HHeJ_T0022510.1 MGP_C3HHeJ_G0016380.1 mouse_genomes_project 1 158906279 159041166 + MGP_C3HHeJ_P0022510 Acbd6 protein_coding protein_coding MGP_C3HHeJ_T0022511.1 MGP_C3HHeJ_G0016380.1 mouse_genomes_project 1 158906283 158935948 + MGP_C3HHeJ_P0022511 Acbd6 protein_coding protein_coding MGP_C3HHeJ_T0022512.1 MGP_C3HHeJ_G0016380.1 mouse_genomes_project 1 158911274 159036935 + Acbd6 protein_coding processed_transcript MGP_C3HHeJ_T0022513.1 MGP_C3HHeJ_G0016380.1 mouse_genomes_project 1 158915405 158920417 + Acbd6 protein_coding retained_intron MGP_C3HHeJ_T0022514.1 MGP_C3HHeJ_G0016380.1 mouse_genomes_project 1 159036830 159038207 + MGP_C3HHeJ_P0022514 Acbd6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098615.1 MGP_C3HHeJ_G0036809.1 mouse_genomes_project 1 53323358 53323472 - Gm24251 snRNA snRNA MGP_C3HHeJ_T0002884.1 MGP_C3HHeJ_G0002712.1 mouse_genomes_project 1 174842275 174846681 + Gm38204 antisense antisense MGP_C3HHeJ_T0005809.1 MGP_C3HHeJ_G0004863.1 mouse_genomes_project 1 122880596 122901705 + Gm29345 lincRNA lincRNA MGP_C3HHeJ_T0012162.1 MGP_C3HHeJ_G0010266.1 mouse_genomes_project 1 145656254 145657451 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101098.1 MGP_C3HHeJ_G0039282.1 mouse_genomes_project 1 185293681 185297142 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101099.1 MGP_C3HHeJ_G0039282.1 mouse_genomes_project 1 185293885 185294935 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0018689.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 9893800 10073728 + MGP_C3HHeJ_P0018689 Sulf1 protein_coding protein_coding MGP_C3HHeJ_T0018690.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 9893846 10072907 + MGP_C3HHeJ_P0018690 Sulf1 protein_coding protein_coding MGP_C3HHeJ_T0018691.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 9894055 10064282 + MGP_C3HHeJ_P0018691 Sulf1 protein_coding protein_coding MGP_C3HHeJ_T0018692.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 9924811 10033184 + Sulf1 protein_coding retained_intron MGP_C3HHeJ_T0018693.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 9924881 10072913 + MGP_C3HHeJ_P0018693 Sulf1 protein_coding protein_coding MGP_C3HHeJ_T0018694.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 9925816 9994612 + MGP_C3HHeJ_P0018694 Sulf1 protein_coding protein_coding MGP_C3HHeJ_T0018695.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 9934469 9994702 + MGP_C3HHeJ_P0018695 Sulf1 protein_coding protein_coding MGP_C3HHeJ_T0018696.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 9993505 9996881 + Sulf1 protein_coding retained_intron MGP_C3HHeJ_T0018697.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 10046211 10050690 + Sulf1 protein_coding retained_intron MGP_C3HHeJ_T0018698.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 10054694 10073728 + MGP_C3HHeJ_P0018698 Sulf1 protein_coding protein_coding MGP_C3HHeJ_T0020344.1 MGP_C3HHeJ_G0015932.1 mouse_genomes_project 1 75128406 75142191 + MGP_C3HHeJ_P0020344 Wnt10a protein_coding protein_coding MGP_C3HHeJ_T0002835.1 MGP_C3HHeJ_G0002674.1 mouse_genomes_project 1 138824656 138833646 + Gm26568 antisense antisense MGP_C3HHeJ_T0101541.1 MGP_C3HHeJ_G0039507.1 mouse_genomes_project 1 15641451 15664026 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011785.1 MGP_C3HHeJ_G0009889.1 mouse_genomes_project 1 6557448 6558084 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021093.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93022815 93238689 - MGP_C3HHeJ_P0021093 Hdac4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0021094.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93022815 93271755 - MGP_C3HHeJ_P0021094 Hdac4 protein_coding protein_coding MGP_C3HHeJ_T0021095.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93026794 93238805 - MGP_C3HHeJ_P0021095 Hdac4 protein_coding protein_coding MGP_C3HHeJ_T0021096.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93026995 93100879 - Hdac4 protein_coding processed_transcript MGP_C3HHeJ_T0021097.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93027240 93028896 - Hdac4 protein_coding retained_intron MGP_C3HHeJ_T0021098.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93049403 93069533 - MGP_C3HHeJ_P0021098 Hdac4 protein_coding protein_coding MGP_C3HHeJ_T0021099.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93083069 93086645 - Hdac4 protein_coding retained_intron MGP_C3HHeJ_T0021100.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93097693 93100884 - Hdac4 protein_coding retained_intron MGP_C3HHeJ_T0021101.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93123206 93271711 - MGP_C3HHeJ_P0021101 Hdac4 protein_coding protein_coding MGP_C3HHeJ_T0021102.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93123217 93204294 - Hdac4 protein_coding processed_transcript MGP_C3HHeJ_T0021103.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93123301 93204294 - Hdac4 protein_coding processed_transcript MGP_C3HHeJ_T0012138.1 MGP_C3HHeJ_G0010242.1 mouse_genomes_project 1 132505412 132505821 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023762.1 MGP_C3HHeJ_G0016661.1 mouse_genomes_project 1 188185625 188324671 - MGP_C3HHeJ_P0023762 Disp1 protein_coding protein_coding MGP_C3HHeJ_T0023763.1 MGP_C3HHeJ_G0016661.1 mouse_genomes_project 1 188185625 188248640 - MGP_C3HHeJ_P0023763 Disp1 protein_coding protein_coding MGP_C3HHeJ_T0023764.1 MGP_C3HHeJ_G0016661.1 mouse_genomes_project 1 188185625 188324666 - MGP_C3HHeJ_P0023764 Disp1 protein_coding protein_coding MGP_C3HHeJ_T0023765.1 MGP_C3HHeJ_G0016661.1 mouse_genomes_project 1 188195531 188248710 - Disp1 protein_coding retained_intron MGP_C3HHeJ_T0023766.1 MGP_C3HHeJ_G0016661.1 mouse_genomes_project 1 188233041 188324703 - MGP_C3HHeJ_P0023766 Disp1 protein_coding protein_coding MGP_C3HHeJ_T0098639.1 MGP_C3HHeJ_G0036833.1 mouse_genomes_project 1 107609404 107609511 + Gm26214 snRNA snRNA MGP_C3HHeJ_T0005756.1 MGP_C3HHeJ_G0004819.1 mouse_genomes_project 1 91278395 91283240 - Gm28721 lincRNA lincRNA MGP_C3HHeJ_T0005843.1 MGP_C3HHeJ_G0004893.1 mouse_genomes_project 1 139313920 139335555 + Gm19705 lincRNA lincRNA MGP_C3HHeJ_T0005844.1 MGP_C3HHeJ_G0004893.1 mouse_genomes_project 1 139319624 139327680 + Gm19705 lincRNA lincRNA MGP_C3HHeJ_T0005845.1 MGP_C3HHeJ_G0004893.1 mouse_genomes_project 1 139328348 139338213 + Gm19705 lincRNA lincRNA MGP_C3HHeJ_T0005846.1 MGP_C3HHeJ_G0004893.1 mouse_genomes_project 1 139328581 139338211 + Gm19705 lincRNA lincRNA MGP_C3HHeJ_T0005858.1 MGP_C3HHeJ_G0004903.1 mouse_genomes_project 1 151339016 151352763 - Gm29515 lincRNA lincRNA MGP_C3HHeJ_T0011910.1 MGP_C3HHeJ_G0010014.1 mouse_genomes_project 1 44636109 44637285 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002770.1 MGP_C3HHeJ_G0002623.1 mouse_genomes_project 1 75111388 75113848 - Gm29539 antisense antisense MGP_C3HHeJ_T0000355.1 MGP_C3HHeJ_G0000305.1 mouse_genomes_project 1 11083683 11085932 - TEC TEC MGP_C3HHeJ_T0011897.1 MGP_C3HHeJ_G0010001.1 mouse_genomes_project 1 42674336 42674516 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000663.1 MGP_C3HHeJ_G0000608.1 mouse_genomes_project 1 159782908 159785501 + TEC TEC MGP_C3HHeJ_T0000554.1 MGP_C3HHeJ_G0000501.1 mouse_genomes_project 1 108287675 108289755 - TEC TEC MGP_C3HHeJ_T0012007.1 MGP_C3HHeJ_G0010111.1 mouse_genomes_project 1 73604095 73604429 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011968.1 MGP_C3HHeJ_G0010072.1 mouse_genomes_project 1 60713267 60713792 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000584.1 MGP_C3HHeJ_G0000531.1 mouse_genomes_project 1 130371647 130374143 + TEC TEC MGP_C3HHeJ_T0101608.1 MGP_C3HHeJ_G0039574.1 mouse_genomes_project 1 186096554 186105594 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098593.1 MGP_C3HHeJ_G0036787.1 mouse_genomes_project 1 839079 839137 - Gm27396 snRNA snRNA MGP_C3HHeJ_T0000460.1 MGP_C3HHeJ_G0000407.1 mouse_genomes_project 1 61376758 61377040 + TEC TEC MGP_C3HHeJ_T0011865.1 MGP_C3HHeJ_G0009969.1 mouse_genomes_project 1 31513041 31515322 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011974.1 MGP_C3HHeJ_G0010078.1 mouse_genomes_project 1 61821450 61821728 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022016.1 MGP_C3HHeJ_G0016284.1 mouse_genomes_project 1 137542351 137669341 - MGP_C3HHeJ_P0022016 Lgr6 protein_coding protein_coding MGP_C3HHeJ_T0022017.1 MGP_C3HHeJ_G0016284.1 mouse_genomes_project 1 137545958 137669067 - MGP_C3HHeJ_P0022017 Lgr6 protein_coding protein_coding MGP_C3HHeJ_T0022018.1 MGP_C3HHeJ_G0016284.1 mouse_genomes_project 1 137563179 137582637 - Lgr6 protein_coding processed_transcript MGP_C3HHeJ_T0005690.1 MGP_C3HHeJ_G0004769.1 mouse_genomes_project 1 64572369 64575189 + Gm29152 lincRNA lincRNA MGP_C3HHeJ_T0019088.1 MGP_C3HHeJ_G0015696.1 mouse_genomes_project 1 34781821 34799107 + MGP_C3HHeJ_P0019088 Cnnm3 protein_coding protein_coding MGP_C3HHeJ_T0019089.1 MGP_C3HHeJ_G0015696.1 mouse_genomes_project 1 34781821 34799107 + MGP_C3HHeJ_P0019089 Cnnm3 protein_coding protein_coding MGP_C3HHeJ_T0019090.1 MGP_C3HHeJ_G0015696.1 mouse_genomes_project 1 34783051 34790609 + Cnnm3 protein_coding retained_intron MGP_C3HHeJ_T0019091.1 MGP_C3HHeJ_G0015696.1 mouse_genomes_project 1 34788742 34789748 + Cnnm3 protein_coding retained_intron MGP_C3HHeJ_T0019092.1 MGP_C3HHeJ_G0015696.1 mouse_genomes_project 1 34790934 34796470 + Cnnm3 protein_coding retained_intron MGP_C3HHeJ_T0099874.1 MGP_C3HHeJ_G0038068.1 mouse_genomes_project 1 109193487 109193618 - Gm24553 snoRNA snoRNA MGP_C3HHeJ_T0022552.1 MGP_C3HHeJ_G0016387.1 mouse_genomes_project 1 159574900 159627030 - MGP_C3HHeJ_P0022552 Tdrd5 protein_coding protein_coding MGP_C3HHeJ_T0022553.1 MGP_C3HHeJ_G0016387.1 mouse_genomes_project 1 159574902 159626714 - MGP_C3HHeJ_P0022553 Tdrd5 protein_coding protein_coding MGP_C3HHeJ_T0022554.1 MGP_C3HHeJ_G0016387.1 mouse_genomes_project 1 159580263 159584031 - Tdrd5 protein_coding processed_transcript MGP_C3HHeJ_T0022555.1 MGP_C3HHeJ_G0016387.1 mouse_genomes_project 1 159587527 159594900 - Tdrd5 protein_coding retained_intron MGP_C3HHeJ_T0022556.1 MGP_C3HHeJ_G0016387.1 mouse_genomes_project 1 159614464 159626972 - MGP_C3HHeJ_P0022556 Tdrd5 protein_coding protein_coding MGP_C3HHeJ_T0021122.1 MGP_C3HHeJ_G0016088.1 mouse_genomes_project 1 93760064 93761073 + MGP_C3HHeJ_P0021122 Olfr1410 protein_coding protein_coding MGP_C3HHeJ_T0021123.1 MGP_C3HHeJ_G0016088.1 mouse_genomes_project 1 93760064 93761033 + MGP_C3HHeJ_P0021123 Olfr1410 protein_coding protein_coding MGP_C3HHeJ_T0020501.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75725325 75732600 + MGP_C3HHeJ_P0020501 Gmppa protein_coding protein_coding MGP_C3HHeJ_T0020502.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75725338 75732599 + MGP_C3HHeJ_P0020502 Gmppa protein_coding protein_coding MGP_C3HHeJ_T0020503.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75725356 75728269 + MGP_C3HHeJ_P0020503 Gmppa protein_coding protein_coding MGP_C3HHeJ_T0020504.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75725362 75729928 + MGP_C3HHeJ_P0020504 Gmppa protein_coding protein_coding MGP_C3HHeJ_T0020505.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75725363 75730941 + MGP_C3HHeJ_P0020505 Gmppa protein_coding protein_coding MGP_C3HHeJ_T0020506.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75725377 75731035 + MGP_C3HHeJ_P0020506 Gmppa protein_coding protein_coding MGP_C3HHeJ_T0020507.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75725379 75728815 + MGP_C3HHeJ_P0020507 Gmppa protein_coding protein_coding MGP_C3HHeJ_T0020508.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75725482 75730950 + MGP_C3HHeJ_P0020508 Gmppa protein_coding protein_coding MGP_C3HHeJ_T0020509.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75725508 75727724 + MGP_C3HHeJ_P0020509 Gmppa protein_coding protein_coding MGP_C3HHeJ_T0020510.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75726337 75731454 + MGP_C3HHeJ_P0020510 Gmppa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020511.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75731045 75732358 + Gmppa protein_coding retained_intron MGP_C3HHeJ_T0020512.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75731591 75732599 + Gmppa protein_coding retained_intron MGP_C3HHeJ_T0020513.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75731649 75732605 + Gmppa protein_coding retained_intron MGP_C3HHeJ_T0019375.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42589957 42605729 + Tpp2 protein_coding processed_transcript MGP_C3HHeJ_T0019376.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42590317 42658830 + MGP_C3HHeJ_P0019376 Tpp2 protein_coding protein_coding MGP_C3HHeJ_T0019377.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42590324 42613325 + Tpp2 protein_coding retained_intron MGP_C3HHeJ_T0019378.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42590325 42613325 + Tpp2 protein_coding retained_intron MGP_C3HHeJ_T0019379.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42590325 42658859 + MGP_C3HHeJ_P0019379 Tpp2 protein_coding protein_coding MGP_C3HHeJ_T0019380.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42590343 42646899 + MGP_C3HHeJ_P0019380 Tpp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019381.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42590355 42646880 + MGP_C3HHeJ_P0019381 Tpp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019382.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42627680 42633659 + MGP_C3HHeJ_P0019382 Tpp2 protein_coding protein_coding MGP_C3HHeJ_T0019383.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42639579 42658859 + MGP_C3HHeJ_P0019383 Tpp2 protein_coding protein_coding MGP_C3HHeJ_T0019384.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42656678 42658195 + Tpp2 protein_coding retained_intron MGP_C3HHeJ_T0002809.1 MGP_C3HHeJ_G0002655.1 mouse_genomes_project 1 129987049 130008975 - 2900009J06Rik antisense antisense MGP_C3HHeJ_T0002810.1 MGP_C3HHeJ_G0002655.1 mouse_genomes_project 1 129987049 130009013 - 2900009J06Rik antisense antisense MGP_C3HHeJ_T0101560.1 MGP_C3HHeJ_G0039526.1 mouse_genomes_project 1 89014145 89014539 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101546.1 MGP_C3HHeJ_G0039512.1 mouse_genomes_project 1 18901435 18902705 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011806.1 MGP_C3HHeJ_G0009910.1 mouse_genomes_project 1 14056927 14057610 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021916.1 MGP_C3HHeJ_G0016261.1 mouse_genomes_project 1 136170443 136181449 - MGP_C3HHeJ_P0021916 Lax1 protein_coding protein_coding MGP_C3HHeJ_T0021917.1 MGP_C3HHeJ_G0016261.1 mouse_genomes_project 1 136171812 136181427 - MGP_C3HHeJ_P0021917 Lax1 protein_coding protein_coding MGP_C3HHeJ_T0023904.1 MGP_C3HHeJ_G0016689.1 mouse_genomes_project 1 194935777 194984090 - MGP_C3HHeJ_P0023904 Cenpf protein_coding protein_coding MGP_C3HHeJ_T0023905.1 MGP_C3HHeJ_G0016689.1 mouse_genomes_project 1 194937865 194944026 - MGP_C3HHeJ_P0023905 Cenpf protein_coding protein_coding MGP_C3HHeJ_T0023906.1 MGP_C3HHeJ_G0016689.1 mouse_genomes_project 1 194954721 194984090 - MGP_C3HHeJ_P0023906 Cenpf protein_coding protein_coding MGP_C3HHeJ_T0023907.1 MGP_C3HHeJ_G0016689.1 mouse_genomes_project 1 194963756 194967145 - Cenpf protein_coding retained_intron MGP_C3HHeJ_T0023908.1 MGP_C3HHeJ_G0016689.1 mouse_genomes_project 1 194979828 194984039 - MGP_C3HHeJ_P0023908 Cenpf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023909.1 MGP_C3HHeJ_G0016689.1 mouse_genomes_project 1 194983063 194984090 - Cenpf protein_coding retained_intron MGP_C3HHeJ_T0099907.1 MGP_C3HHeJ_G0038101.1 mouse_genomes_project 1 164591267 164591343 + Gm25789 snoRNA snoRNA MGP_C3HHeJ_T0023629.1 MGP_C3HHeJ_G0016630.1 mouse_genomes_project 1 185297076 185395854 + MGP_C3HHeJ_P0023629 Itpkb protein_coding protein_coding MGP_C3HHeJ_T0023630.1 MGP_C3HHeJ_G0016630.1 mouse_genomes_project 1 185300457 185305050 + Itpkb protein_coding retained_intron MGP_C3HHeJ_T0011801.1 MGP_C3HHeJ_G0009905.1 mouse_genomes_project 1 10646626 10647267 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101606.1 MGP_C3HHeJ_G0039572.1 mouse_genomes_project 1 185989243 185989375 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012044.1 MGP_C3HHeJ_G0010148.1 mouse_genomes_project 1 92367285 92368177 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005760.1 MGP_C3HHeJ_G0004823.1 mouse_genomes_project 1 92027571 92028373 - Gm28199 lincRNA lincRNA MGP_C3HHeJ_T0012257.1 MGP_C3HHeJ_G0010361.1 mouse_genomes_project 1 188992725 188992872 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020018.1 MGP_C3HHeJ_G0015869.1 mouse_genomes_project 1 64713839 64886159 - MGP_C3HHeJ_P0020018 Plekhm3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020019.1 MGP_C3HHeJ_G0015869.1 mouse_genomes_project 1 64716977 64886159 - MGP_C3HHeJ_P0020019 Plekhm3 protein_coding protein_coding MGP_C3HHeJ_T0020020.1 MGP_C3HHeJ_G0015869.1 mouse_genomes_project 1 64721665 64764433 - Plekhm3 protein_coding processed_transcript MGP_C3HHeJ_T0020021.1 MGP_C3HHeJ_G0015869.1 mouse_genomes_project 1 64788896 64856694 - Plekhm3 protein_coding retained_intron MGP_C3HHeJ_T0020022.1 MGP_C3HHeJ_G0015869.1 mouse_genomes_project 1 64866812 64886110 - MGP_C3HHeJ_P0020022 Plekhm3 protein_coding protein_coding MGP_C3HHeJ_T0020023.1 MGP_C3HHeJ_G0015869.1 mouse_genomes_project 1 64882506 64886062 - Plekhm3 protein_coding processed_transcript MGP_C3HHeJ_T0000742.1 MGP_C3HHeJ_G0000686.1 mouse_genomes_project 1 187073380 187077249 - TEC TEC MGP_C3HHeJ_T0005921.1 MGP_C3HHeJ_G0004953.1 mouse_genomes_project 1 180172044 180176181 + Gm36307 lincRNA lincRNA MGP_C3HHeJ_T0022357.1 MGP_C3HHeJ_G0016349.1 mouse_genomes_project 1 154634957 154655262 - MGP_C3HHeJ_P0022357 Rnf2 protein_coding protein_coding MGP_C3HHeJ_T0022358.1 MGP_C3HHeJ_G0016349.1 mouse_genomes_project 1 154649690 154680621 - MGP_C3HHeJ_P0022358 Rnf2 protein_coding protein_coding MGP_C3HHeJ_T0022359.1 MGP_C3HHeJ_G0016349.1 mouse_genomes_project 1 154649722 154650602 - Rnf2 protein_coding retained_intron MGP_C3HHeJ_T0022360.1 MGP_C3HHeJ_G0016349.1 mouse_genomes_project 1 154649884 154663019 - MGP_C3HHeJ_P0022360 Rnf2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0022361.1 MGP_C3HHeJ_G0016349.1 mouse_genomes_project 1 154649887 154653219 - Rnf2 protein_coding processed_transcript MGP_C3HHeJ_T0022362.1 MGP_C3HHeJ_G0016349.1 mouse_genomes_project 1 154656000 154680582 - MGP_C3HHeJ_P0022362 Rnf2 protein_coding protein_coding MGP_C3HHeJ_T0020851.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88138705 88167783 + Gigyf2 protein_coding processed_transcript MGP_C3HHeJ_T0020852.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88138710 88266383 + MGP_C3HHeJ_P0020852 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020853.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88138736 88264731 + MGP_C3HHeJ_P0020853 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020854.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88138737 88169845 + Gigyf2 protein_coding processed_transcript MGP_C3HHeJ_T0020855.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88138740 88238613 + MGP_C3HHeJ_P0020855 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020856.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88138753 88140715 + Gigyf2 protein_coding retained_intron MGP_C3HHeJ_T0020857.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88138755 88203453 + Gigyf2 protein_coding processed_transcript MGP_C3HHeJ_T0020858.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88138773 88247142 + MGP_C3HHeJ_P0020858 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020859.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88166506 88264731 + MGP_C3HHeJ_P0020859 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020860.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88166506 88264731 + MGP_C3HHeJ_P0020860 Gigyf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020861.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88176373 88191545 + Gigyf2 protein_coding retained_intron MGP_C3HHeJ_T0020862.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88176733 88178228 + Gigyf2 protein_coding retained_intron MGP_C3HHeJ_T0020863.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88198886 88219864 + Gigyf2 protein_coding processed_transcript MGP_C3HHeJ_T0020864.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88198907 88219595 + MGP_C3HHeJ_P0020864 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020867.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88216222 88256432 + MGP_C3HHeJ_P0020867 Gigyf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020868.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88216281 88220253 + MGP_C3HHeJ_P0020868 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020869.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88217467 88220163 + MGP_C3HHeJ_P0020869 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020870.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88217499 88223254 + MGP_C3HHeJ_P0020870 Gigyf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020871.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88217515 88219918 + MGP_C3HHeJ_P0020871 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020872.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88219930 88232893 + MGP_C3HHeJ_P0020872 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020873.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88246462 88266383 + Gigyf2 protein_coding processed_transcript MGP_C3HHeJ_T0020874.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88257728 88264794 + Gigyf2 protein_coding retained_intron MGP_C3HHeJ_T0019274.1 MGP_C3HHeJ_G0015730.1 mouse_genomes_project 1 37991830 38017830 - MGP_C3HHeJ_P0019274 Rnf149 protein_coding protein_coding MGP_C3HHeJ_T0019275.1 MGP_C3HHeJ_G0015730.1 mouse_genomes_project 1 37993006 38017781 - MGP_C3HHeJ_P0019275 Rnf149 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019276.1 MGP_C3HHeJ_G0015730.1 mouse_genomes_project 1 37996140 37999295 - Rnf149 protein_coding retained_intron MGP_C3HHeJ_T0019277.1 MGP_C3HHeJ_G0015730.1 mouse_genomes_project 1 38005634 38017728 - MGP_C3HHeJ_P0019277 Rnf149 protein_coding protein_coding MGP_C3HHeJ_T0005940.1 MGP_C3HHeJ_G0004967.1 mouse_genomes_project 1 186933739 186935355 - Gm5533 lincRNA lincRNA MGP_C3HHeJ_T0020953.1 MGP_C3HHeJ_G0016049.1 mouse_genomes_project 1 89197825 89206578 + MGP_C3HHeJ_P0020953 protein_coding protein_coding MGP_C3HHeJ_T0011809.1 MGP_C3HHeJ_G0009913.1 mouse_genomes_project 1 14661527 14661906 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011886.1 MGP_C3HHeJ_G0009990.1 mouse_genomes_project 1 37302374 37303146 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097965.1 MGP_C3HHeJ_G0036177.1 mouse_genomes_project 1 137717213 137717314 - Gm26280 rRNA rRNA MGP_C3HHeJ_T0000588.1 MGP_C3HHeJ_G0000535.1 mouse_genomes_project 1 131666210 131667169 + TEC TEC MGP_C3HHeJ_T0000704.1 MGP_C3HHeJ_G0000649.1 mouse_genomes_project 1 169558879 169559878 - TEC TEC MGP_C3HHeJ_T0000646.1 MGP_C3HHeJ_G0000591.1 mouse_genomes_project 1 152532755 152534790 - TEC TEC MGP_C3HHeJ_T0011848.1 MGP_C3HHeJ_G0009952.1 mouse_genomes_project 1 27897810 27898432 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018539.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3303828 3331932 + MGP_C3HHeJ_P0018539 Rb1cc1 protein_coding protein_coding MGP_C3HHeJ_T0018540.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3303858 3335997 + MGP_C3HHeJ_P0018540 Rb1cc1 protein_coding protein_coding MGP_C3HHeJ_T0018541.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3312290 3328392 + Rb1cc1 protein_coding retained_intron MGP_C3HHeJ_T0018542.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3312470 3371389 + MGP_C3HHeJ_P0018542 Rb1cc1 protein_coding protein_coding MGP_C3HHeJ_T0018543.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3312635 3331631 + MGP_C3HHeJ_P0018543 Rb1cc1 protein_coding protein_coding MGP_C3HHeJ_T0018544.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3325686 3346679 + MGP_C3HHeJ_P0018544 Rb1cc1 protein_coding protein_coding MGP_C3HHeJ_T0018545.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3338595 3346008 + Rb1cc1 protein_coding retained_intron MGP_C3HHeJ_T0018546.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3346737 3371604 + MGP_C3HHeJ_P0018546 Rb1cc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018547.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3347626 3348909 + Rb1cc1 protein_coding processed_transcript MGP_C3HHeJ_T0018548.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3347744 3363581 + Rb1cc1 protein_coding retained_intron MGP_C3HHeJ_T0018549.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3358564 3360616 + Rb1cc1 protein_coding retained_intron MGP_C3HHeJ_T0018550.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3360664 3362665 + Rb1cc1 protein_coding retained_intron MGP_C3HHeJ_T0018551.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3360694 3371603 + MGP_C3HHeJ_P0018551 Rb1cc1 protein_coding protein_coding MGP_C3HHeJ_T0018552.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3363376 3370537 + Rb1cc1 protein_coding retained_intron MGP_C3HHeJ_T0018553.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3368449 3372689 + Rb1cc1 protein_coding retained_intron MGP_C3HHeJ_T0011170.1 MGP_C3HHeJ_G0009303.1 mouse_genomes_project 1 200357139 200357433 + Gm23885 misc_RNA misc_RNA MGP_C3HHeJ_T0005990.1 MGP_C3HHeJ_G0005006.1 mouse_genomes_project 1 200491669 200497954 - Gm32250 lincRNA lincRNA MGP_C3HHeJ_T0000711.1 MGP_C3HHeJ_G0000656.1 mouse_genomes_project 1 176693189 176695923 - TEC TEC MGP_C3HHeJ_T0011939.1 MGP_C3HHeJ_G0010043.1 mouse_genomes_project 1 52621157 52621730 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018944.1 MGP_C3HHeJ_G0015672.1 mouse_genomes_project 1 30646050 30650260 - MGP_C3HHeJ_P0018944 Gm5415 protein_coding protein_coding MGP_C3HHeJ_T0005615.1 MGP_C3HHeJ_G0004719.1 mouse_genomes_project 1 38289591 38296102 - 1700066B17Rik lincRNA lincRNA MGP_C3HHeJ_T0005616.1 MGP_C3HHeJ_G0004719.1 mouse_genomes_project 1 38292857 38297733 - 1700066B17Rik lincRNA lincRNA MGP_C3HHeJ_T0005617.1 MGP_C3HHeJ_G0004719.1 mouse_genomes_project 1 38292862 38297737 - 1700066B17Rik lincRNA lincRNA MGP_C3HHeJ_T0012241.1 MGP_C3HHeJ_G0010345.1 mouse_genomes_project 1 182452056 182452666 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002828.1 MGP_C3HHeJ_G0002667.1 mouse_genomes_project 1 136413132 136421209 + Gm15851 antisense antisense MGP_C3HHeJ_T0021537.1 MGP_C3HHeJ_G0016180.1 mouse_genomes_project 1 123569527 123590771 - MGP_C3HHeJ_P0021537 Htr5b protein_coding protein_coding MGP_C3HHeJ_T0009395.1 MGP_C3HHeJ_G0007528.1 mouse_genomes_project 1 37594419 37594516 - Mir6349 miRNA miRNA MGP_C3HHeJ_T0021160.1 MGP_C3HHeJ_G0016097.1 mouse_genomes_project 1 94112314 94142091 + MGP_C3HHeJ_P0021160 Gpr35 protein_coding protein_coding MGP_C3HHeJ_T0021161.1 MGP_C3HHeJ_G0016097.1 mouse_genomes_project 1 94119062 94142414 + MGP_C3HHeJ_P0021161 Gpr35 protein_coding protein_coding MGP_C3HHeJ_T0021162.1 MGP_C3HHeJ_G0016097.1 mouse_genomes_project 1 94132523 94144449 + MGP_C3HHeJ_P0021162 Gpr35 protein_coding protein_coding MGP_C3HHeJ_T0021163.1 MGP_C3HHeJ_G0016097.1 mouse_genomes_project 1 94132523 94145658 + MGP_C3HHeJ_P0021163 Gpr35 protein_coding protein_coding MGP_C3HHeJ_T0021164.1 MGP_C3HHeJ_G0016097.1 mouse_genomes_project 1 94134748 94145269 + MGP_C3HHeJ_P0021164 Gpr35 protein_coding protein_coding MGP_C3HHeJ_T0021165.1 MGP_C3HHeJ_G0016097.1 mouse_genomes_project 1 94138321 94145796 + MGP_C3HHeJ_P0021165 Gpr35 protein_coding protein_coding MGP_C3HHeJ_T0000542.1 MGP_C3HHeJ_G0000489.1 mouse_genomes_project 1 96996284 96998389 + TEC TEC MGP_C3HHeJ_T0098627.1 MGP_C3HHeJ_G0036821.1 mouse_genomes_project 1 72454494 72454702 + Gm25360 snRNA snRNA MGP_C3HHeJ_T0000386.1 MGP_C3HHeJ_G0000334.1 mouse_genomes_project 1 23416237 23419818 - TEC TEC MGP_C3HHeJ_T0000696.1 MGP_C3HHeJ_G0000641.1 mouse_genomes_project 1 166910663 166912937 - TEC TEC MGP_C3HHeJ_T0021363.1 MGP_C3HHeJ_G0016139.1 mouse_genomes_project 1 108407267 108447685 - MGP_C3HHeJ_P0021363 Kdsr protein_coding protein_coding MGP_C3HHeJ_T0021364.1 MGP_C3HHeJ_G0016139.1 mouse_genomes_project 1 108435459 108447657 - Kdsr protein_coding retained_intron MGP_C3HHeJ_T0021365.1 MGP_C3HHeJ_G0016139.1 mouse_genomes_project 1 108445059 108447641 - Kdsr protein_coding retained_intron MGP_C3HHeJ_T0012191.1 MGP_C3HHeJ_G0010295.1 mouse_genomes_project 1 157637867 157638420 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000504.1 MGP_C3HHeJ_G0000451.1 mouse_genomes_project 1 82028865 82030870 - TEC TEC MGP_C3HHeJ_T0020228.1 MGP_C3HHeJ_G0015913.1 mouse_genomes_project 1 74584937 74586012 + MGP_C3HHeJ_P0020228 Gpbar1 protein_coding protein_coding MGP_C3HHeJ_T0011763.1 MGP_C3HHeJ_G0009867.1 mouse_genomes_project 1 3478084 3478707 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020702.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85318218 85447834 - MGP_C3HHeJ_P0020702 Trip12 protein_coding protein_coding MGP_C3HHeJ_T0020703.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85318218 85413142 - MGP_C3HHeJ_P0020703 Trip12 protein_coding protein_coding MGP_C3HHeJ_T0020704.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85321293 85413142 - MGP_C3HHeJ_P0020704 Trip12 protein_coding protein_coding MGP_C3HHeJ_T0020705.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85321293 85347769 - MGP_C3HHeJ_P0020705 Trip12 protein_coding protein_coding MGP_C3HHeJ_T0020706.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85321606 85328742 - MGP_C3HHeJ_P0020706 Trip12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020707.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85323239 85325915 - Trip12 protein_coding retained_intron MGP_C3HHeJ_T0020708.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85325645 85328813 - Trip12 protein_coding retained_intron MGP_C3HHeJ_T0020709.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85341763 85352894 - MGP_C3HHeJ_P0020709 Trip12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020710.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85347649 85349035 - Trip12 protein_coding retained_intron MGP_C3HHeJ_T0020711.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85347710 85413142 - MGP_C3HHeJ_P0020711 Trip12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020712.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85352892 85413142 - MGP_C3HHeJ_P0020712 Trip12 protein_coding protein_coding MGP_C3HHeJ_T0020713.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85355138 85358674 - Trip12 protein_coding retained_intron MGP_C3HHeJ_T0020714.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85364472 85365237 - Trip12 protein_coding retained_intron MGP_C3HHeJ_T0020715.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85364508 85391862 - MGP_C3HHeJ_P0020715 Trip12 protein_coding protein_coding MGP_C3HHeJ_T0020716.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85380849 85382660 - Trip12 protein_coding retained_intron MGP_C3HHeJ_T0020717.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85381263 85413142 - MGP_C3HHeJ_P0020717 Trip12 protein_coding protein_coding MGP_C3HHeJ_T0020718.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85392297 85447584 - MGP_C3HHeJ_P0020718 Trip12 protein_coding protein_coding MGP_C3HHeJ_T0020719.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85392541 85446153 - MGP_C3HHeJ_P0020719 Trip12 protein_coding protein_coding MGP_C3HHeJ_T0005612.1 MGP_C3HHeJ_G0004716.1 mouse_genomes_project 1 35027872 35033572 - Gm33533 lincRNA lincRNA MGP_C3HHeJ_T0019388.1 MGP_C3HHeJ_G0015756.1 mouse_genomes_project 1 42718165 42724150 - MGP_C3HHeJ_P0019388 Gm8251 protein_coding protein_coding MGP_C3HHeJ_T0098653.1 MGP_C3HHeJ_G0036847.1 mouse_genomes_project 1 137932470 137932576 - Gm22796 snRNA snRNA MGP_C3HHeJ_T0011817.1 MGP_C3HHeJ_G0009921.1 mouse_genomes_project 1 16532705 16532984 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002726.1 MGP_C3HHeJ_G0002593.1 mouse_genomes_project 1 38538560 38548751 - Gm16894 antisense antisense MGP_C3HHeJ_T0002832.1 MGP_C3HHeJ_G0002671.1 mouse_genomes_project 1 137824151 137841936 + Gm26642 antisense antisense MGP_C3HHeJ_T0005836.1 MGP_C3HHeJ_G0004886.1 mouse_genomes_project 1 138197515 138282830 - Gm38399 lincRNA lincRNA MGP_C3HHeJ_T0000760.1 MGP_C3HHeJ_G0000703.1 mouse_genomes_project 1 194334100 194335639 + TEC TEC MGP_C3HHeJ_T0023467.1 MGP_C3HHeJ_G0016601.1 mouse_genomes_project 1 180281480 180287588 - MGP_C3HHeJ_P0023467 Chml protein_coding protein_coding MGP_C3HHeJ_T0020888.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88440250 88547195 + MGP_C3HHeJ_P0020888 Inpp5d protein_coding protein_coding MGP_C3HHeJ_T0020889.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88440294 88455318 + Inpp5d protein_coding retained_intron MGP_C3HHeJ_T0020890.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88440300 88547191 + MGP_C3HHeJ_P0020890 Inpp5d protein_coding protein_coding MGP_C3HHeJ_T0020891.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88440327 88465644 + Inpp5d protein_coding processed_transcript MGP_C3HHeJ_T0020892.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88440336 88547191 + MGP_C3HHeJ_P0020892 Inpp5d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020893.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88440427 88547198 + MGP_C3HHeJ_P0020893 Inpp5d protein_coding protein_coding MGP_C3HHeJ_T0020894.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88440565 88489805 + MGP_C3HHeJ_P0020894 Inpp5d protein_coding protein_coding MGP_C3HHeJ_T0020895.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88441612 88489729 + MGP_C3HHeJ_P0020895 Inpp5d protein_coding protein_coding MGP_C3HHeJ_T0020896.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88502398 88547190 + MGP_C3HHeJ_P0020896 Inpp5d protein_coding protein_coding MGP_C3HHeJ_T0020897.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88536028 88538847 + Inpp5d protein_coding processed_transcript MGP_C3HHeJ_T0000348.1 MGP_C3HHeJ_G0000298.1 mouse_genomes_project 1 10416239 10419732 - TEC TEC MGP_C3HHeJ_T0023807.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189945747 189982903 - MGP_C3HHeJ_P0023807 Marc2 protein_coding protein_coding MGP_C3HHeJ_T0023808.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189946357 189962884 - Marc2 protein_coding processed_transcript MGP_C3HHeJ_T0023809.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189946361 189956680 - Marc2 protein_coding retained_intron MGP_C3HHeJ_T0023810.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189946371 189962669 - Marc2 protein_coding processed_transcript MGP_C3HHeJ_T0023811.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189946373 189951850 - Marc2 protein_coding retained_intron MGP_C3HHeJ_T0023812.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189946439 189962659 - Marc2 protein_coding processed_transcript MGP_C3HHeJ_T0023813.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189951642 189982830 - Marc2 protein_coding processed_transcript MGP_C3HHeJ_T0023814.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189954781 189983473 - MGP_C3HHeJ_P0023814 Marc2 protein_coding protein_coding MGP_C3HHeJ_T0023815.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189963186 189982593 - Marc2 protein_coding processed_transcript MGP_C3HHeJ_T0023816.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189964341 189982869 - Marc2 protein_coding retained_intron MGP_C3HHeJ_T0023249.1 MGP_C3HHeJ_G0016529.1 mouse_genomes_project 1 175629525 175790836 - MGP_C3HHeJ_P0023249 Itln1 protein_coding protein_coding MGP_C3HHeJ_T0023251.1 MGP_C3HHeJ_G0016529.1 mouse_genomes_project 1 175785537 175788234 - MGP_C3HHeJ_P0023251 Itln1 protein_coding protein_coding MGP_C3HHeJ_T0101576.1 MGP_C3HHeJ_G0039542.1 mouse_genomes_project 1 106858422 106858637 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101548.1 MGP_C3HHeJ_G0039514.1 mouse_genomes_project 1 51375070 51375958 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005950.1 MGP_C3HHeJ_G0004976.1 mouse_genomes_project 1 189469023 189502257 + Gm37223 lincRNA lincRNA MGP_C3HHeJ_T0005951.1 MGP_C3HHeJ_G0004976.1 mouse_genomes_project 1 189469023 189502225 + Gm37223 lincRNA lincRNA MGP_C3HHeJ_T0005952.1 MGP_C3HHeJ_G0004976.1 mouse_genomes_project 1 189469023 189502254 + Gm37223 lincRNA lincRNA MGP_C3HHeJ_T0005953.1 MGP_C3HHeJ_G0004976.1 mouse_genomes_project 1 189469027 189505951 + Gm37223 lincRNA lincRNA MGP_C3HHeJ_T0005954.1 MGP_C3HHeJ_G0004976.1 mouse_genomes_project 1 189469038 189505979 + Gm37223 lincRNA lincRNA MGP_C3HHeJ_T0005956.1 MGP_C3HHeJ_G0004976.1 mouse_genomes_project 1 189494375 189505951 + Gm37223 lincRNA lincRNA MGP_C3HHeJ_T0097967.1 MGP_C3HHeJ_G0036179.1 mouse_genomes_project 1 141604286 141604402 - n-R5s217 rRNA rRNA MGP_C3HHeJ_T0002690.1 MGP_C3HHeJ_G0002566.1 mouse_genomes_project 1 12048334 12073707 + Gm9947 antisense antisense MGP_C3HHeJ_T0002691.1 MGP_C3HHeJ_G0002566.1 mouse_genomes_project 1 12050851 12053771 + Gm9947 antisense antisense MGP_C3HHeJ_T0101586.1 MGP_C3HHeJ_G0039552.1 mouse_genomes_project 1 142697616 142783959 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101571.1 MGP_C3HHeJ_G0039537.1 mouse_genomes_project 1 103674087 103674686 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0023101.1 MGP_C3HHeJ_G0016501.1 mouse_genomes_project 1 174795209 174806689 - MGP_C3HHeJ_P0023101 Fcrla protein_coding protein_coding MGP_C3HHeJ_T0023102.1 MGP_C3HHeJ_G0016501.1 mouse_genomes_project 1 174795508 174799482 - MGP_C3HHeJ_P0023102 Fcrla protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023103.1 MGP_C3HHeJ_G0016501.1 mouse_genomes_project 1 174795515 174806689 - MGP_C3HHeJ_P0023103 Fcrla protein_coding protein_coding MGP_C3HHeJ_T0023104.1 MGP_C3HHeJ_G0016501.1 mouse_genomes_project 1 174797997 174806661 - MGP_C3HHeJ_P0023104 Fcrla protein_coding protein_coding MGP_C3HHeJ_T0023105.1 MGP_C3HHeJ_G0016501.1 mouse_genomes_project 1 174798710 174806666 - MGP_C3HHeJ_P0023105 Fcrla protein_coding protein_coding MGP_C3HHeJ_T0023106.1 MGP_C3HHeJ_G0016501.1 mouse_genomes_project 1 174798730 174806640 - Fcrla protein_coding processed_transcript MGP_C3HHeJ_T0098645.1 MGP_C3HHeJ_G0036839.1 mouse_genomes_project 1 124622098 124622247 + Gm24547 snRNA snRNA MGP_C3HHeJ_T0021280.1 MGP_C3HHeJ_G0016121.1 mouse_genomes_project 1 96841073 96924794 - MGP_C3HHeJ_P0021280 St8sia4 protein_coding protein_coding MGP_C3HHeJ_T0021281.1 MGP_C3HHeJ_G0016121.1 mouse_genomes_project 1 96874995 96924758 - MGP_C3HHeJ_P0021281 St8sia4 protein_coding protein_coding MGP_C3HHeJ_T0021282.1 MGP_C3HHeJ_G0016121.1 mouse_genomes_project 1 96915557 96924791 - St8sia4 protein_coding retained_intron MGP_C3HHeJ_T0021283.1 MGP_C3HHeJ_G0016121.1 mouse_genomes_project 1 96921197 96924788 - St8sia4 protein_coding retained_intron MGP_C3HHeJ_T0020040.1 MGP_C3HHeJ_G0015877.1 mouse_genomes_project 1 65092211 65112758 - MGP_C3HHeJ_P0020040 Idh1 protein_coding protein_coding MGP_C3HHeJ_T0020041.1 MGP_C3HHeJ_G0015877.1 mouse_genomes_project 1 65092213 65120904 - MGP_C3HHeJ_P0020041 Idh1 protein_coding protein_coding MGP_C3HHeJ_T0020042.1 MGP_C3HHeJ_G0015877.1 mouse_genomes_project 1 65099794 65120863 - MGP_C3HHeJ_P0020042 Idh1 protein_coding protein_coding MGP_C3HHeJ_T0020043.1 MGP_C3HHeJ_G0015877.1 mouse_genomes_project 1 65099839 65120925 - MGP_C3HHeJ_P0020043 Idh1 protein_coding protein_coding MGP_C3HHeJ_T0020044.1 MGP_C3HHeJ_G0015877.1 mouse_genomes_project 1 65102184 65109134 - MGP_C3HHeJ_P0020044 Idh1 protein_coding protein_coding MGP_C3HHeJ_T0020045.1 MGP_C3HHeJ_G0015877.1 mouse_genomes_project 1 65104715 65120884 - MGP_C3HHeJ_P0020045 Idh1 protein_coding protein_coding MGP_C3HHeJ_T0020046.1 MGP_C3HHeJ_G0015877.1 mouse_genomes_project 1 65108865 65120904 - MGP_C3HHeJ_P0020046 Idh1 protein_coding protein_coding MGP_C3HHeJ_T0023419.1 MGP_C3HHeJ_G0016579.1 mouse_genomes_project 1 178534760 178549832 - MGP_C3HHeJ_P0023419 Ifi202b protein_coding protein_coding MGP_C3HHeJ_T0022956.1 MGP_C3HHeJ_G0016464.1 mouse_genomes_project 1 169499495 169585414 + MGP_C3HHeJ_P0022956 Cd247 protein_coding protein_coding MGP_C3HHeJ_T0022957.1 MGP_C3HHeJ_G0016464.1 mouse_genomes_project 1 169499495 169585414 + MGP_C3HHeJ_P0022957 Cd247 protein_coding protein_coding MGP_C3HHeJ_T0022958.1 MGP_C3HHeJ_G0016464.1 mouse_genomes_project 1 169499495 169585414 + MGP_C3HHeJ_P0022958 Cd247 protein_coding protein_coding MGP_C3HHeJ_T0022959.1 MGP_C3HHeJ_G0016464.1 mouse_genomes_project 1 169499503 169575827 + MGP_C3HHeJ_P0022959 Cd247 protein_coding protein_coding MGP_C3HHeJ_T0022960.1 MGP_C3HHeJ_G0016464.1 mouse_genomes_project 1 169499537 169581697 + MGP_C3HHeJ_P0022960 Cd247 protein_coding protein_coding MGP_C3HHeJ_T0022961.1 MGP_C3HHeJ_G0016464.1 mouse_genomes_project 1 169499579 169583355 + MGP_C3HHeJ_P0022961 Cd247 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022962.1 MGP_C3HHeJ_G0016464.1 mouse_genomes_project 1 169499579 169584510 + MGP_C3HHeJ_P0022962 Cd247 protein_coding protein_coding MGP_C3HHeJ_T0022963.1 MGP_C3HHeJ_G0016464.1 mouse_genomes_project 1 169571976 169575316 + Cd247 protein_coding retained_intron MGP_C3HHeJ_T0022964.1 MGP_C3HHeJ_G0016464.1 mouse_genomes_project 1 169578915 169591538 + Cd247 protein_coding processed_transcript MGP_C3HHeJ_T0023380.1 MGP_C3HHeJ_G0016562.1 mouse_genomes_project 1 177287996 177289432 + MGP_C3HHeJ_P0023380 Olfr16 protein_coding protein_coding MGP_C3HHeJ_T0099856.1 MGP_C3HHeJ_G0038050.1 mouse_genomes_project 1 63038377 63038509 + Snora41 snoRNA snoRNA MGP_C3HHeJ_T0002925.1 MGP_C3HHeJ_G0002747.1 mouse_genomes_project 1 196453938 196454794 - Gm38188 antisense antisense MGP_C3HHeJ_T0023535.1 MGP_C3HHeJ_G0016615.1 mouse_genomes_project 1 183197642 183212297 - MGP_C3HHeJ_P0023535 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023536.1 MGP_C3HHeJ_G0016615.1 mouse_genomes_project 1 183197702 183205190 - MGP_C3HHeJ_P0023536 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023537.1 MGP_C3HHeJ_G0016615.1 mouse_genomes_project 1 183198188 183203976 - MGP_C3HHeJ_P0023537 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011852.1 MGP_C3HHeJ_G0009956.1 mouse_genomes_project 1 28862116 28862478 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019670.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56974562 56993475 - MGP_C3HHeJ_P0019670 Tyw5 protein_coding protein_coding MGP_C3HHeJ_T0019671.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56974565 56992845 - Tyw5 protein_coding retained_intron MGP_C3HHeJ_T0019672.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56974565 56993048 - MGP_C3HHeJ_P0019672 Tyw5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019673.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56974730 56977097 - Tyw5 protein_coding processed_transcript MGP_C3HHeJ_T0019674.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56974741 56980024 - Tyw5 protein_coding retained_intron MGP_C3HHeJ_T0019675.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56974991 56992817 - MGP_C3HHeJ_P0019675 Tyw5 protein_coding protein_coding MGP_C3HHeJ_T0019676.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56975011 56978066 - Tyw5 protein_coding retained_intron MGP_C3HHeJ_T0019677.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56977037 56987849 - Tyw5 protein_coding processed_transcript MGP_C3HHeJ_T0019678.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56977754 56992845 - MGP_C3HHeJ_P0019678 Tyw5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019679.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56979510 56992911 - Tyw5 protein_coding retained_intron MGP_C3HHeJ_T0023390.1 MGP_C3HHeJ_G0016569.1 mouse_genomes_project 1 177667411 177669278 - Ackr1 protein_coding processed_transcript MGP_C3HHeJ_T0023391.1 MGP_C3HHeJ_G0016569.1 mouse_genomes_project 1 177667415 177669030 - MGP_C3HHeJ_P0023391 Ackr1 protein_coding protein_coding MGP_C3HHeJ_T0023392.1 MGP_C3HHeJ_G0016569.1 mouse_genomes_project 1 177667417 177669201 - MGP_C3HHeJ_P0023392 Ackr1 protein_coding protein_coding MGP_C3HHeJ_T0000763.1 MGP_C3HHeJ_G0000706.1 mouse_genomes_project 1 196636622 196638468 + TEC TEC MGP_C3HHeJ_T0021931.1 MGP_C3HHeJ_G0016264.1 mouse_genomes_project 1 136416690 136427801 - MGP_C3HHeJ_P0021931 Prelp protein_coding protein_coding MGP_C3HHeJ_T0021932.1 MGP_C3HHeJ_G0016264.1 mouse_genomes_project 1 136419106 136427798 - Prelp protein_coding processed_transcript MGP_C3HHeJ_T0019662.1 MGP_C3HHeJ_G0015808.1 mouse_genomes_project 1 56360317 56547544 - MGP_C3HHeJ_P0019662 Satb2 protein_coding protein_coding MGP_C3HHeJ_T0019663.1 MGP_C3HHeJ_G0015808.1 mouse_genomes_project 1 56360322 56546900 - MGP_C3HHeJ_P0019663 Satb2 protein_coding protein_coding MGP_C3HHeJ_T0019664.1 MGP_C3HHeJ_G0015808.1 mouse_genomes_project 1 56360324 56543210 - MGP_C3HHeJ_P0019664 Satb2 protein_coding protein_coding MGP_C3HHeJ_T0019665.1 MGP_C3HHeJ_G0015808.1 mouse_genomes_project 1 56520651 56543178 - MGP_C3HHeJ_P0019665 Satb2 protein_coding protein_coding MGP_C3HHeJ_T0019666.1 MGP_C3HHeJ_G0015808.1 mouse_genomes_project 1 56543077 56553667 - MGP_C3HHeJ_P0019666 Satb2 protein_coding protein_coding MGP_C3HHeJ_T0019167.1 MGP_C3HHeJ_G0015708.1 mouse_genomes_project 1 35760380 35773560 - MGP_C3HHeJ_P0019167 Coa5 protein_coding protein_coding MGP_C3HHeJ_T0019168.1 MGP_C3HHeJ_G0015708.1 mouse_genomes_project 1 35771967 35773457 - Coa5 protein_coding retained_intron MGP_C3HHeJ_T0011914.1 MGP_C3HHeJ_G0010018.1 mouse_genomes_project 1 45997622 45997918 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012043.1 MGP_C3HHeJ_G0010147.1 mouse_genomes_project 1 92232200 92232920 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022400.1 MGP_C3HHeJ_G0016359.1 mouse_genomes_project 1 156043111 156111008 - MGP_C3HHeJ_P0022400 Smg7 protein_coding protein_coding MGP_C3HHeJ_T0022401.1 MGP_C3HHeJ_G0016359.1 mouse_genomes_project 1 156043112 156086571 - MGP_C3HHeJ_P0022401 Smg7 protein_coding protein_coding MGP_C3HHeJ_T0022402.1 MGP_C3HHeJ_G0016359.1 mouse_genomes_project 1 156044986 156111032 - MGP_C3HHeJ_P0022402 Smg7 protein_coding protein_coding MGP_C3HHeJ_T0022403.1 MGP_C3HHeJ_G0016359.1 mouse_genomes_project 1 156051378 156079562 - Smg7 protein_coding processed_transcript MGP_C3HHeJ_T0022404.1 MGP_C3HHeJ_G0016359.1 mouse_genomes_project 1 156051400 156055150 - Smg7 protein_coding processed_transcript MGP_C3HHeJ_T0022405.1 MGP_C3HHeJ_G0016359.1 mouse_genomes_project 1 156052070 156055065 - Smg7 protein_coding retained_intron MGP_C3HHeJ_T0021366.1 MGP_C3HHeJ_G0016140.1 mouse_genomes_project 1 108452049 108484712 - MGP_C3HHeJ_P0021366 Vps4b protein_coding protein_coding MGP_C3HHeJ_T0021367.1 MGP_C3HHeJ_G0016140.1 mouse_genomes_project 1 108457420 108484773 - MGP_C3HHeJ_P0021367 Vps4b protein_coding protein_coding MGP_C3HHeJ_T0021368.1 MGP_C3HHeJ_G0016140.1 mouse_genomes_project 1 108465289 108470782 - Vps4b protein_coding retained_intron MGP_C3HHeJ_T0021369.1 MGP_C3HHeJ_G0016140.1 mouse_genomes_project 1 108467432 108468612 - Vps4b protein_coding retained_intron MGP_C3HHeJ_T0021370.1 MGP_C3HHeJ_G0016140.1 mouse_genomes_project 1 108473787 108477932 - Vps4b protein_coding processed_transcript MGP_C3HHeJ_T0021371.1 MGP_C3HHeJ_G0016140.1 mouse_genomes_project 1 108479082 108484622 - Vps4b protein_coding retained_intron MGP_C3HHeJ_T0020229.1 MGP_C3HHeJ_G0015914.1 mouse_genomes_project 1 74586227 74593290 - MGP_C3HHeJ_P0020229 Aamp protein_coding protein_coding MGP_C3HHeJ_T0020230.1 MGP_C3HHeJ_G0015914.1 mouse_genomes_project 1 74586233 74592568 - Aamp protein_coding retained_intron MGP_C3HHeJ_T0020231.1 MGP_C3HHeJ_G0015914.1 mouse_genomes_project 1 74586233 74593232 - MGP_C3HHeJ_P0020231 Aamp protein_coding protein_coding MGP_C3HHeJ_T0020232.1 MGP_C3HHeJ_G0015914.1 mouse_genomes_project 1 74587320 74592531 - MGP_C3HHeJ_P0020232 Aamp protein_coding protein_coding MGP_C3HHeJ_T0020233.1 MGP_C3HHeJ_G0015914.1 mouse_genomes_project 1 74587447 74589530 - Aamp protein_coding retained_intron MGP_C3HHeJ_T0020234.1 MGP_C3HHeJ_G0015914.1 mouse_genomes_project 1 74589583 74592973 - MGP_C3HHeJ_P0020234 Aamp protein_coding protein_coding MGP_C3HHeJ_T0023424.1 MGP_C3HHeJ_G0016583.1 mouse_genomes_project 1 178646896 178647850 + MGP_C3HHeJ_P0023424 Olfr430 protein_coding protein_coding MGP_C3HHeJ_T0021507.1 MGP_C3HHeJ_G0016173.1 mouse_genomes_project 1 122155716 122222749 + MGP_C3HHeJ_P0021507 3110009E18Rik protein_coding protein_coding MGP_C3HHeJ_T0021508.1 MGP_C3HHeJ_G0016173.1 mouse_genomes_project 1 122155724 122222749 + MGP_C3HHeJ_P0021508 3110009E18Rik protein_coding protein_coding MGP_C3HHeJ_T0021509.1 MGP_C3HHeJ_G0016173.1 mouse_genomes_project 1 122155729 122222749 + MGP_C3HHeJ_P0021509 3110009E18Rik protein_coding protein_coding MGP_C3HHeJ_T0021510.1 MGP_C3HHeJ_G0016173.1 mouse_genomes_project 1 122186061 122201010 + 3110009E18Rik protein_coding processed_transcript MGP_C3HHeJ_T0021511.1 MGP_C3HHeJ_G0016173.1 mouse_genomes_project 1 122186133 122205060 + MGP_C3HHeJ_P0021511 3110009E18Rik protein_coding protein_coding MGP_C3HHeJ_T0021512.1 MGP_C3HHeJ_G0016173.1 mouse_genomes_project 1 122196024 122209097 + 3110009E18Rik protein_coding processed_transcript MGP_C3HHeJ_T0011152.1 MGP_C3HHeJ_G0009285.1 mouse_genomes_project 1 59385368 59385453 + Gm24545 misc_RNA misc_RNA MGP_C3HHeJ_T0023483.1 MGP_C3HHeJ_G0016604.1 mouse_genomes_project 1 180516087 180517984 + MGP_C3HHeJ_P0023483 Gm38100 protein_coding protein_coding MGP_C3HHeJ_T0023484.1 MGP_C3HHeJ_G0016604.1 mouse_genomes_project 1 180516128 180517457 + MGP_C3HHeJ_P0023484 Gm38100 protein_coding protein_coding MGP_C3HHeJ_T0023186.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175196030 175202072 - MGP_C3HHeJ_P0023186 Usp21 protein_coding protein_coding MGP_C3HHeJ_T0023187.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175196034 175202005 - MGP_C3HHeJ_P0023187 Usp21 protein_coding protein_coding MGP_C3HHeJ_T0023188.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175196043 175197001 - Usp21 protein_coding retained_intron MGP_C3HHeJ_T0023189.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175196043 175202036 - MGP_C3HHeJ_P0023189 Usp21 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023190.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175196043 175202042 - MGP_C3HHeJ_P0023190 Usp21 protein_coding protein_coding MGP_C3HHeJ_T0023191.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175196387 175197261 - Usp21 protein_coding retained_intron MGP_C3HHeJ_T0023192.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175196893 175198668 - Usp21 protein_coding retained_intron MGP_C3HHeJ_T0023193.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175197125 175198079 - Usp21 protein_coding retained_intron MGP_C3HHeJ_T0023194.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175197499 175199695 - Usp21 protein_coding retained_intron MGP_C3HHeJ_T0023195.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175197612 175201031 - Usp21 protein_coding retained_intron MGP_C3HHeJ_T0023196.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175198543 175202040 - Usp21 protein_coding retained_intron MGP_C3HHeJ_T0023197.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175199012 175200887 - MGP_C3HHeJ_P0023197 Usp21 protein_coding protein_coding MGP_C3HHeJ_T0101570.1 MGP_C3HHeJ_G0039536.1 mouse_genomes_project 1 98544024 98668666 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0022920.1 MGP_C3HHeJ_G0016458.1 mouse_genomes_project 1 169020588 169151882 - MGP_C3HHeJ_P0022920 Dcaf6 protein_coding protein_coding MGP_C3HHeJ_T0022921.1 MGP_C3HHeJ_G0016458.1 mouse_genomes_project 1 169021207 169051121 - Dcaf6 protein_coding retained_intron MGP_C3HHeJ_T0022922.1 MGP_C3HHeJ_G0016458.1 mouse_genomes_project 1 169050180 169094600 - MGP_C3HHeJ_P0022922 Dcaf6 protein_coding protein_coding MGP_C3HHeJ_T0022923.1 MGP_C3HHeJ_G0016458.1 mouse_genomes_project 1 169050610 169094615 - MGP_C3HHeJ_P0022923 Dcaf6 protein_coding protein_coding MGP_C3HHeJ_T0022924.1 MGP_C3HHeJ_G0016458.1 mouse_genomes_project 1 169067782 169151892 - Dcaf6 protein_coding processed_transcript MGP_C3HHeJ_T0020421.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75495940 75500709 + MGP_C3HHeJ_P0020421 Stk16 protein_coding protein_coding MGP_C3HHeJ_T0020422.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75495948 75496974 + Stk16 protein_coding retained_intron MGP_C3HHeJ_T0020423.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75495950 75497338 + MGP_C3HHeJ_P0020423 Stk16 protein_coding protein_coding MGP_C3HHeJ_T0020424.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75495972 75499345 + MGP_C3HHeJ_P0020424 Stk16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020425.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75495976 75497337 + MGP_C3HHeJ_P0020425 Stk16 protein_coding protein_coding MGP_C3HHeJ_T0020426.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75495978 75499342 + Stk16 protein_coding retained_intron MGP_C3HHeJ_T0020427.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75495982 75498240 + Stk16 protein_coding processed_transcript MGP_C3HHeJ_T0020428.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75496156 75498331 + MGP_C3HHeJ_P0020428 Stk16 protein_coding protein_coding MGP_C3HHeJ_T0020429.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75496342 75499054 + MGP_C3HHeJ_P0020429 Stk16 protein_coding protein_coding MGP_C3HHeJ_T0020430.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75497064 75498290 + Stk16 protein_coding retained_intron MGP_C3HHeJ_T0020431.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75497105 75498196 + Stk16 protein_coding retained_intron MGP_C3HHeJ_T0020432.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75497107 75497508 + Stk16 protein_coding retained_intron MGP_C3HHeJ_T0020433.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75497501 75498258 + Stk16 protein_coding retained_intron MGP_C3HHeJ_T0020434.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75497726 75499119 + Stk16 protein_coding processed_transcript MGP_C3HHeJ_T0020435.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75497734 75499016 + Stk16 protein_coding retained_intron MGP_C3HHeJ_T0020436.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75498163 75499134 + Stk16 protein_coding retained_intron MGP_C3HHeJ_T0000446.1 MGP_C3HHeJ_G0000393.1 mouse_genomes_project 1 55075658 55077254 + TEC TEC MGP_C3HHeJ_T0099863.1 MGP_C3HHeJ_G0038057.1 mouse_genomes_project 1 87059396 87059529 - Snora75 snoRNA snoRNA MGP_C3HHeJ_T0002899.1 MGP_C3HHeJ_G0002725.1 mouse_genomes_project 1 183801044 183819962 - Gm16564 antisense antisense MGP_C3HHeJ_T0012069.1 MGP_C3HHeJ_G0010173.1 mouse_genomes_project 1 103385555 103385791 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021947.1 MGP_C3HHeJ_G0016269.1 mouse_genomes_project 1 136713723 136721507 + MGP_C3HHeJ_P0021947 Mybph protein_coding protein_coding MGP_C3HHeJ_T0021948.1 MGP_C3HHeJ_G0016269.1 mouse_genomes_project 1 136713732 136721508 + MGP_C3HHeJ_P0021948 Mybph protein_coding protein_coding MGP_C3HHeJ_T0019836.1 MGP_C3HHeJ_G0015838.1 mouse_genomes_project 1 59345697 59432632 - Sumo1 protein_coding processed_transcript MGP_C3HHeJ_T0019841.1 MGP_C3HHeJ_G0015838.1 mouse_genomes_project 1 59399653 59432674 - MGP_C3HHeJ_P0019841 Sumo1 protein_coding protein_coding MGP_C3HHeJ_T0019842.1 MGP_C3HHeJ_G0015838.1 mouse_genomes_project 1 59403613 59432674 - Sumo1 protein_coding retained_intron MGP_C3HHeJ_T0009387.1 MGP_C3HHeJ_G0007520.1 mouse_genomes_project 1 27365793 27365918 + Mir6342 miRNA miRNA MGP_C3HHeJ_T0022479.1 MGP_C3HHeJ_G0016376.1 mouse_genomes_project 1 158458539 158479040 - MGP_C3HHeJ_P0022479 Mr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022480.1 MGP_C3HHeJ_G0016376.1 mouse_genomes_project 1 158459136 158465281 - Mr1 protein_coding retained_intron MGP_C3HHeJ_T0022481.1 MGP_C3HHeJ_G0016376.1 mouse_genomes_project 1 158459140 158479019 - MGP_C3HHeJ_P0022481 Mr1 protein_coding protein_coding MGP_C3HHeJ_T0022482.1 MGP_C3HHeJ_G0016376.1 mouse_genomes_project 1 158460093 158479040 - MGP_C3HHeJ_P0022482 Mr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022483.1 MGP_C3HHeJ_G0016376.1 mouse_genomes_project 1 158467046 158479050 - Mr1 protein_coding retained_intron MGP_C3HHeJ_T0011901.1 MGP_C3HHeJ_G0010005.1 mouse_genomes_project 1 43354164 43354584 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002913.1 MGP_C3HHeJ_G0002737.1 mouse_genomes_project 1 192332672 192335387 + 1700007P06Rik antisense antisense MGP_C3HHeJ_T0021792.1 MGP_C3HHeJ_G0016236.1 mouse_genomes_project 1 134624875 134695555 + MGP_C3HHeJ_P0021792 Lemd1 protein_coding protein_coding MGP_C3HHeJ_T0021793.1 MGP_C3HHeJ_G0016236.1 mouse_genomes_project 1 134624899 134693710 + MGP_C3HHeJ_P0021793 Lemd1 protein_coding protein_coding MGP_C3HHeJ_T0021794.1 MGP_C3HHeJ_G0016236.1 mouse_genomes_project 1 134624901 134642964 + Lemd1 protein_coding processed_transcript MGP_C3HHeJ_T0021795.1 MGP_C3HHeJ_G0016236.1 mouse_genomes_project 1 134634366 134639201 + Lemd1 protein_coding processed_transcript MGP_C3HHeJ_T0021796.1 MGP_C3HHeJ_G0016236.1 mouse_genomes_project 1 134637269 134637927 + Lemd1 protein_coding processed_transcript MGP_C3HHeJ_T0021797.1 MGP_C3HHeJ_G0016236.1 mouse_genomes_project 1 134660462 134693517 + MGP_C3HHeJ_P0021797 Lemd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021798.1 MGP_C3HHeJ_G0016236.1 mouse_genomes_project 1 134660491 134693337 + MGP_C3HHeJ_P0021798 Lemd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021799.1 MGP_C3HHeJ_G0016236.1 mouse_genomes_project 1 134662862 134664297 + Lemd1 protein_coding retained_intron MGP_C3HHeJ_T0021800.1 MGP_C3HHeJ_G0016236.1 mouse_genomes_project 1 134662862 134693362 + MGP_C3HHeJ_P0021800 Lemd1 protein_coding protein_coding MGP_C3HHeJ_T0016856.1 MGP_C3HHeJ_G0014882.1 mouse_genomes_project 1 169491889 169500182 + Gm16565 processed_transcript sense_overlapping MGP_C3HHeJ_T0016857.1 MGP_C3HHeJ_G0014882.1 mouse_genomes_project 1 169492013 169492982 + Gm16565 processed_transcript processed_transcript MGP_C3HHeJ_T0011815.1 MGP_C3HHeJ_G0009919.1 mouse_genomes_project 1 16161777 16162686 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005680.1 MGP_C3HHeJ_G0004762.1 mouse_genomes_project 1 62971925 62973599 + Ino80dos lincRNA lincRNA MGP_C3HHeJ_T0005681.1 MGP_C3HHeJ_G0004762.1 mouse_genomes_project 1 62972822 62973970 + Ino80dos lincRNA lincRNA MGP_C3HHeJ_T0005682.1 MGP_C3HHeJ_G0004762.1 mouse_genomes_project 1 62973378 63016467 + Ino80dos lincRNA lincRNA MGP_C3HHeJ_T0021561.1 MGP_C3HHeJ_G0016186.1 mouse_genomes_project 1 128066587 128111859 - MGP_C3HHeJ_P0021561 Lypd1 protein_coding protein_coding MGP_C3HHeJ_T0021562.1 MGP_C3HHeJ_G0016186.1 mouse_genomes_project 1 128071246 128111032 - MGP_C3HHeJ_P0021562 Lypd1 protein_coding protein_coding MGP_C3HHeJ_T0021563.1 MGP_C3HHeJ_G0016186.1 mouse_genomes_project 1 128071280 128112574 - MGP_C3HHeJ_P0021563 Lypd1 protein_coding protein_coding MGP_C3HHeJ_T0021564.1 MGP_C3HHeJ_G0016186.1 mouse_genomes_project 1 128072063 128110561 - MGP_C3HHeJ_P0021564 Lypd1 protein_coding protein_coding MGP_C3HHeJ_T0021565.1 MGP_C3HHeJ_G0016186.1 mouse_genomes_project 1 128072480 128112747 - MGP_C3HHeJ_P0021565 Lypd1 protein_coding protein_coding MGP_C3HHeJ_T0021205.1 MGP_C3HHeJ_G0016107.1 mouse_genomes_project 1 94549034 94582912 + MGP_C3HHeJ_P0021205 Ano7 protein_coding protein_coding MGP_C3HHeJ_T0021206.1 MGP_C3HHeJ_G0016107.1 mouse_genomes_project 1 94549034 94582008 + MGP_C3HHeJ_P0021206 Ano7 protein_coding protein_coding MGP_C3HHeJ_T0021207.1 MGP_C3HHeJ_G0016107.1 mouse_genomes_project 1 94580465 94582178 + MGP_C3HHeJ_P0021207 Ano7 protein_coding protein_coding MGP_C3HHeJ_T0000617.1 MGP_C3HHeJ_G0000563.1 mouse_genomes_project 1 140505820 140506115 + TEC TEC MGP_C3HHeJ_T0005900.1 MGP_C3HHeJ_G0004936.1 mouse_genomes_project 1 168355827 168367868 - lincRNA lincRNA MGP_C3HHeJ_T0005901.1 MGP_C3HHeJ_G0004936.1 mouse_genomes_project 1 168356004 168367896 - lincRNA lincRNA MGP_C3HHeJ_T0002717.1 MGP_C3HHeJ_G0002586.1 mouse_genomes_project 1 36222171 36229909 + Gm26805 antisense antisense MGP_C3HHeJ_T0019333.1 MGP_C3HHeJ_G0015743.1 mouse_genomes_project 1 39254580 39274342 - MGP_C3HHeJ_P0019333 Mfsd9 protein_coding protein_coding MGP_C3HHeJ_T0019334.1 MGP_C3HHeJ_G0015743.1 mouse_genomes_project 1 39254583 39274366 - MGP_C3HHeJ_P0019334 Mfsd9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019335.1 MGP_C3HHeJ_G0015743.1 mouse_genomes_project 1 39265171 39274336 - Mfsd9 protein_coding retained_intron MGP_C3HHeJ_T0012029.1 MGP_C3HHeJ_G0010133.1 mouse_genomes_project 1 83776772 83777613 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098595.1 MGP_C3HHeJ_G0036789.1 mouse_genomes_project 1 1791819 1791922 - Gm25493 snRNA snRNA MGP_C3HHeJ_T0011880.1 MGP_C3HHeJ_G0009984.1 mouse_genomes_project 1 33182653 33183089 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009477.1 MGP_C3HHeJ_G0007610.1 mouse_genomes_project 1 197422480 197422561 - Mir3473c miRNA miRNA MGP_C3HHeJ_T0000508.1 MGP_C3HHeJ_G0000455.1 mouse_genomes_project 1 83617170 83618263 - TEC TEC MGP_C3HHeJ_T0099893.1 MGP_C3HHeJ_G0038087.1 mouse_genomes_project 1 156687929 156688069 + Gm25588 snoRNA snoRNA MGP_C3HHeJ_T0002871.1 MGP_C3HHeJ_G0002702.1 mouse_genomes_project 1 167778448 167782235 - Gm16587 antisense antisense MGP_C3HHeJ_T0021104.1 MGP_C3HHeJ_G0016081.1 mouse_genomes_project 1 93539692 93575115 - MGP_C3HHeJ_P0021104 Ndufa10 protein_coding protein_coding MGP_C3HHeJ_T0021105.1 MGP_C3HHeJ_G0016081.1 mouse_genomes_project 1 93539961 93575012 - MGP_C3HHeJ_P0021105 Ndufa10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021106.1 MGP_C3HHeJ_G0016081.1 mouse_genomes_project 1 93540523 93562022 - Ndufa10 protein_coding retained_intron MGP_C3HHeJ_T0021107.1 MGP_C3HHeJ_G0016081.1 mouse_genomes_project 1 93552732 93564296 - Ndufa10 protein_coding processed_transcript MGP_C3HHeJ_T0021108.1 MGP_C3HHeJ_G0016081.1 mouse_genomes_project 1 93563528 93572169 - Ndufa10 protein_coding retained_intron MGP_C3HHeJ_T0021109.1 MGP_C3HHeJ_G0016081.1 mouse_genomes_project 1 93564409 93572358 - Ndufa10 protein_coding retained_intron MGP_C3HHeJ_T0021110.1 MGP_C3HHeJ_G0016081.1 mouse_genomes_project 1 93568721 93575002 - MGP_C3HHeJ_P0021110 Ndufa10 protein_coding protein_coding MGP_C3HHeJ_T0021111.1 MGP_C3HHeJ_G0016081.1 mouse_genomes_project 1 93574033 93575022 - Ndufa10 protein_coding retained_intron MGP_C3HHeJ_T0021615.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130342045 130422408 + R3hdm1 protein_coding retained_intron MGP_C3HHeJ_T0021616.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130342065 130418410 + MGP_C3HHeJ_P0021616 R3hdm1 protein_coding protein_coding MGP_C3HHeJ_T0021617.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130342068 130478391 + MGP_C3HHeJ_P0021617 R3hdm1 protein_coding protein_coding MGP_C3HHeJ_T0021618.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130342068 130428132 + MGP_C3HHeJ_P0021618 R3hdm1 protein_coding protein_coding MGP_C3HHeJ_T0021619.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130342075 130351328 + R3hdm1 protein_coding retained_intron MGP_C3HHeJ_T0021620.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130381451 130426181 + MGP_C3HHeJ_P0021620 R3hdm1 protein_coding protein_coding MGP_C3HHeJ_T0021621.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130381474 130392814 + MGP_C3HHeJ_P0021621 R3hdm1 protein_coding protein_coding MGP_C3HHeJ_T0021622.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130391301 130418463 + MGP_C3HHeJ_P0021622 R3hdm1 protein_coding protein_coding MGP_C3HHeJ_T0021623.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130410819 130417422 + R3hdm1 protein_coding retained_intron MGP_C3HHeJ_T0021624.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130413938 130418398 + R3hdm1 protein_coding retained_intron MGP_C3HHeJ_T0021625.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130416115 130427932 + R3hdm1 protein_coding retained_intron MGP_C3HHeJ_T0021626.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130418423 130432782 + MGP_C3HHeJ_P0021626 R3hdm1 protein_coding protein_coding MGP_C3HHeJ_T0021627.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130421017 130450553 + MGP_C3HHeJ_P0021627 R3hdm1 protein_coding protein_coding MGP_C3HHeJ_T0021628.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130432113 130435822 + R3hdm1 protein_coding retained_intron MGP_C3HHeJ_T0021629.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130446323 130478390 + R3hdm1 protein_coding retained_intron MGP_C3HHeJ_T0021630.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130476033 130478391 + R3hdm1 protein_coding retained_intron MGP_C3HHeJ_T0020792.1 MGP_C3HHeJ_G0016012.1 mouse_genomes_project 1 87052918 87067603 - MGP_C3HHeJ_P0020792 Ncl protein_coding protein_coding MGP_C3HHeJ_T0020793.1 MGP_C3HHeJ_G0016012.1 mouse_genomes_project 1 87058722 87067567 - Ncl protein_coding retained_intron MGP_C3HHeJ_T0020794.1 MGP_C3HHeJ_G0016012.1 mouse_genomes_project 1 87058723 87059439 - Ncl protein_coding retained_intron MGP_C3HHeJ_T0020795.1 MGP_C3HHeJ_G0016012.1 mouse_genomes_project 1 87058791 87060291 - Ncl protein_coding retained_intron MGP_C3HHeJ_T0020796.1 MGP_C3HHeJ_G0016012.1 mouse_genomes_project 1 87059328 87060534 - Ncl protein_coding retained_intron MGP_C3HHeJ_T0020797.1 MGP_C3HHeJ_G0016012.1 mouse_genomes_project 1 87065538 87067172 - MGP_C3HHeJ_P0020797 Ncl protein_coding protein_coding MGP_C3HHeJ_T0009400.1 MGP_C3HHeJ_G0007533.1 mouse_genomes_project 1 48212327 48212769 + Gm22693 miRNA miRNA MGP_C3HHeJ_T0012181.1 MGP_C3HHeJ_G0010285.1 mouse_genomes_project 1 153679701 153680061 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000672.1 MGP_C3HHeJ_G0000617.1 mouse_genomes_project 1 161799645 161804213 + TEC TEC MGP_C3HHeJ_T0009427.1 MGP_C3HHeJ_G0007560.1 mouse_genomes_project 1 87386028 87386085 - Gm22955 miRNA miRNA MGP_C3HHeJ_T0023268.1 MGP_C3HHeJ_G0016536.1 mouse_genomes_project 1 176184748 176187244 + MGP_C3HHeJ_P0023268 Gm10521 protein_coding protein_coding MGP_C3HHeJ_T0098658.1 MGP_C3HHeJ_G0036852.1 mouse_genomes_project 1 147542441 147542548 - Gm23672 snRNA snRNA MGP_C3HHeJ_T0005780.1 MGP_C3HHeJ_G0004841.1 mouse_genomes_project 1 99955189 99976475 + Gm7967 lincRNA lincRNA MGP_C3HHeJ_T0005781.1 MGP_C3HHeJ_G0004841.1 mouse_genomes_project 1 99955190 99976235 + Gm7967 lincRNA lincRNA MGP_C3HHeJ_T0009465.1 MGP_C3HHeJ_G0007598.1 mouse_genomes_project 1 174975788 174975850 - Mir6546 miRNA miRNA MGP_C3HHeJ_T0012042.1 MGP_C3HHeJ_G0010146.1 mouse_genomes_project 1 90241290 90242046 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012034.1 MGP_C3HHeJ_G0010138.1 mouse_genomes_project 1 87034788 87035551 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019358.1 MGP_C3HHeJ_G0015749.1 mouse_genomes_project 1 41720296 41737521 + MGP_C3HHeJ_P0019358 AI597479 protein_coding protein_coding MGP_C3HHeJ_T0020191.1 MGP_C3HHeJ_G0015904.1 mouse_genomes_project 1 72956309 72958860 + MGP_C3HHeJ_P0020191 Rpl37a protein_coding protein_coding MGP_C3HHeJ_T0009437.1 MGP_C3HHeJ_G0007570.1 mouse_genomes_project 1 102350291 102350400 + Gm25537 miRNA miRNA MGP_C3HHeJ_T0020952.1 MGP_C3HHeJ_G0016048.1 mouse_genomes_project 1 89111960 89122337 + MGP_C3HHeJ_P0020952 Ugt1a1 protein_coding protein_coding MGP_C3HHeJ_T0020123.1 MGP_C3HHeJ_G0015890.1 mouse_genomes_project 1 69693280 69844724 - MGP_C3HHeJ_P0020123 Ikzf2 protein_coding protein_coding MGP_C3HHeJ_T0020124.1 MGP_C3HHeJ_G0015890.1 mouse_genomes_project 1 69693825 69846076 - MGP_C3HHeJ_P0020124 Ikzf2 protein_coding protein_coding MGP_C3HHeJ_T0020125.1 MGP_C3HHeJ_G0015890.1 mouse_genomes_project 1 69694011 69846108 - MGP_C3HHeJ_P0020125 Ikzf2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0020126.1 MGP_C3HHeJ_G0015890.1 mouse_genomes_project 1 69694011 69843001 - MGP_C3HHeJ_P0020126 Ikzf2 protein_coding protein_coding MGP_C3HHeJ_T0020127.1 MGP_C3HHeJ_G0015890.1 mouse_genomes_project 1 69694011 69843001 - MGP_C3HHeJ_P0020127 Ikzf2 protein_coding protein_coding MGP_C3HHeJ_T0020128.1 MGP_C3HHeJ_G0015890.1 mouse_genomes_project 1 69694011 69843001 - MGP_C3HHeJ_P0020128 Ikzf2 protein_coding protein_coding MGP_C3HHeJ_T0020129.1 MGP_C3HHeJ_G0015890.1 mouse_genomes_project 1 69732881 69844138 - MGP_C3HHeJ_P0020129 Ikzf2 protein_coding protein_coding MGP_C3HHeJ_T0020130.1 MGP_C3HHeJ_G0015890.1 mouse_genomes_project 1 69840401 69843380 - Ikzf2 protein_coding retained_intron MGP_C3HHeJ_T0020131.1 MGP_C3HHeJ_G0015890.1 mouse_genomes_project 1 69840402 69845971 - Ikzf2 protein_coding retained_intron MGP_C3HHeJ_T0002713.1 MGP_C3HHeJ_G0002583.1 mouse_genomes_project 1 35438583 35439575 - Gm37020 antisense antisense MGP_C3HHeJ_T0019718.1 MGP_C3HHeJ_G0015818.1 mouse_genomes_project 1 57888607 57985370 + MGP_C3HHeJ_P0019718 Aox2 protein_coding protein_coding MGP_C3HHeJ_T0019719.1 MGP_C3HHeJ_G0015818.1 mouse_genomes_project 1 57892814 57981436 + MGP_C3HHeJ_P0019719 Aox2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0101333.1 MGP_C3HHeJ_G0039413.1 mouse_genomes_project 1 58269533 58302022 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101334.1 MGP_C3HHeJ_G0039413.1 mouse_genomes_project 1 58301135 58301265 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0000670.1 MGP_C3HHeJ_G0000615.1 mouse_genomes_project 1 160783404 160785800 - TEC TEC MGP_C3HHeJ_T0101575.1 MGP_C3HHeJ_G0039541.1 mouse_genomes_project 1 106214459 106215819 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011843.1 MGP_C3HHeJ_G0009947.1 mouse_genomes_project 1 26430540 26430814 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000678.1 MGP_C3HHeJ_G0000623.1 mouse_genomes_project 1 163725643 163727517 + TEC TEC MGP_C3HHeJ_T0000645.1 MGP_C3HHeJ_G0000590.1 mouse_genomes_project 1 152509852 152511310 - TEC TEC MGP_C3HHeJ_T0012045.1 MGP_C3HHeJ_G0010149.1 mouse_genomes_project 1 92545930 92546123 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020617.1 MGP_C3HHeJ_G0015978.1 mouse_genomes_project 1 80701139 80777230 - MGP_C3HHeJ_P0020617 Cul3 protein_coding protein_coding MGP_C3HHeJ_T0020618.1 MGP_C3HHeJ_G0015978.1 mouse_genomes_project 1 80703039 80777061 - MGP_C3HHeJ_P0020618 Cul3 protein_coding protein_coding MGP_C3HHeJ_T0020619.1 MGP_C3HHeJ_G0015978.1 mouse_genomes_project 1 80703163 80713659 - MGP_C3HHeJ_P0020619 Cul3 protein_coding protein_coding MGP_C3HHeJ_T0020620.1 MGP_C3HHeJ_G0015978.1 mouse_genomes_project 1 80703458 80712782 - Cul3 protein_coding retained_intron MGP_C3HHeJ_T0020621.1 MGP_C3HHeJ_G0015978.1 mouse_genomes_project 1 80723268 80777057 - MGP_C3HHeJ_P0020621 Cul3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020622.1 MGP_C3HHeJ_G0015978.1 mouse_genomes_project 1 80725068 80777029 - MGP_C3HHeJ_P0020622 Cul3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020816.1 MGP_C3HHeJ_G0016019.1 mouse_genomes_project 1 87456581 87510181 + Dis3l2 protein_coding processed_transcript MGP_C3HHeJ_T0020817.1 MGP_C3HHeJ_G0016019.1 mouse_genomes_project 1 87456592 87850987 + MGP_C3HHeJ_P0020817 Dis3l2 protein_coding protein_coding MGP_C3HHeJ_T0020818.1 MGP_C3HHeJ_G0016019.1 mouse_genomes_project 1 87456601 87649983 + Dis3l2 protein_coding retained_intron MGP_C3HHeJ_T0020819.1 MGP_C3HHeJ_G0016019.1 mouse_genomes_project 1 87456601 87850087 + MGP_C3HHeJ_P0020819 Dis3l2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020820.1 MGP_C3HHeJ_G0016019.1 mouse_genomes_project 1 87456616 87850984 + MGP_C3HHeJ_P0020820 Dis3l2 protein_coding protein_coding MGP_C3HHeJ_T0020821.1 MGP_C3HHeJ_G0016019.1 mouse_genomes_project 1 87615561 87616296 + Dis3l2 protein_coding retained_intron MGP_C3HHeJ_T0011154.1 MGP_C3HHeJ_G0009287.1 mouse_genomes_project 1 70089084 70089359 - Gm22665 misc_RNA misc_RNA MGP_C3HHeJ_T0012020.1 MGP_C3HHeJ_G0010124.1 mouse_genomes_project 1 82062667 82065994 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023455.1 MGP_C3HHeJ_G0016598.1 mouse_genomes_project 1 180197999 180223761 - MGP_C3HHeJ_P0023455 Fh1 protein_coding protein_coding MGP_C3HHeJ_T0023456.1 MGP_C3HHeJ_G0016598.1 mouse_genomes_project 1 180199001 180201907 - Fh1 protein_coding retained_intron MGP_C3HHeJ_T0023457.1 MGP_C3HHeJ_G0016598.1 mouse_genomes_project 1 180199003 180204269 - Fh1 protein_coding retained_intron MGP_C3HHeJ_T0023458.1 MGP_C3HHeJ_G0016598.1 mouse_genomes_project 1 180199009 180207336 - MGP_C3HHeJ_P0023458 Fh1 protein_coding protein_coding MGP_C3HHeJ_T0023459.1 MGP_C3HHeJ_G0016598.1 mouse_genomes_project 1 180212904 180223699 - MGP_C3HHeJ_P0023459 Fh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023408.1 MGP_C3HHeJ_G0016575.1 mouse_genomes_project 1 178234005 178252508 - MGP_C3HHeJ_P0023408 AI607873 protein_coding protein_coding MGP_C3HHeJ_T0023409.1 MGP_C3HHeJ_G0016575.1 mouse_genomes_project 1 178234258 178252444 - MGP_C3HHeJ_P0023409 AI607873 protein_coding protein_coding MGP_C3HHeJ_T0005749.1 MGP_C3HHeJ_G0004813.1 mouse_genomes_project 1 89746533 89747380 + Platr5 lincRNA lincRNA MGP_C3HHeJ_T0005750.1 MGP_C3HHeJ_G0004813.1 mouse_genomes_project 1 89746597 89747353 + Platr5 lincRNA lincRNA MGP_C3HHeJ_T0021644.1 MGP_C3HHeJ_G0016200.1 mouse_genomes_project 1 130839337 130843412 - MGP_C3HHeJ_P0021644 Cxcr4 protein_coding protein_coding MGP_C3HHeJ_T0021645.1 MGP_C3HHeJ_G0016200.1 mouse_genomes_project 1 130840229 130843415 - MGP_C3HHeJ_P0021645 Cxcr4 protein_coding protein_coding MGP_C3HHeJ_T0005991.1 MGP_C3HHeJ_G0005007.1 mouse_genomes_project 1 200520337 200520688 - Gm37027 lincRNA lincRNA MGP_C3HHeJ_T0020096.1 MGP_C3HHeJ_G0015884.1 mouse_genomes_project 1 66707320 66786942 - MGP_C3HHeJ_P0020096 Kansl1l protein_coding protein_coding MGP_C3HHeJ_T0020097.1 MGP_C3HHeJ_G0015884.1 mouse_genomes_project 1 66707437 66803233 - MGP_C3HHeJ_P0020097 Kansl1l protein_coding protein_coding MGP_C3HHeJ_T0020098.1 MGP_C3HHeJ_G0015884.1 mouse_genomes_project 1 66724271 66803249 - MGP_C3HHeJ_P0020098 Kansl1l protein_coding protein_coding MGP_C3HHeJ_T0020099.1 MGP_C3HHeJ_G0015884.1 mouse_genomes_project 1 66766702 66794507 - Kansl1l protein_coding processed_transcript MGP_C3HHeJ_T0020100.1 MGP_C3HHeJ_G0015884.1 mouse_genomes_project 1 66786473 66803233 - Kansl1l protein_coding retained_intron MGP_C3HHeJ_T0023468.1 MGP_C3HHeJ_G0016602.1 mouse_genomes_project 1 180297806 180344666 + Wdr64 protein_coding processed_transcript MGP_C3HHeJ_T0023469.1 MGP_C3HHeJ_G0016602.1 mouse_genomes_project 1 180297806 180418396 + MGP_C3HHeJ_P0023469 Wdr64 protein_coding protein_coding MGP_C3HHeJ_T0023470.1 MGP_C3HHeJ_G0016602.1 mouse_genomes_project 1 180297806 180418396 + MGP_C3HHeJ_P0023470 Wdr64 protein_coding protein_coding MGP_C3HHeJ_T0023471.1 MGP_C3HHeJ_G0016602.1 mouse_genomes_project 1 180298002 180418028 + MGP_C3HHeJ_P0023471 Wdr64 protein_coding protein_coding MGP_C3HHeJ_T0023472.1 MGP_C3HHeJ_G0016602.1 mouse_genomes_project 1 180369783 180418393 + MGP_C3HHeJ_P0023472 Wdr64 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021185.1 MGP_C3HHeJ_G0016103.1 mouse_genomes_project 1 94404638 94474429 + MGP_C3HHeJ_P0021185 Sned1 protein_coding protein_coding MGP_C3HHeJ_T0021186.1 MGP_C3HHeJ_G0016103.1 mouse_genomes_project 1 94404648 94454999 + Sned1 protein_coding retained_intron MGP_C3HHeJ_T0021187.1 MGP_C3HHeJ_G0016103.1 mouse_genomes_project 1 94444945 94452808 + Sned1 protein_coding processed_transcript MGP_C3HHeJ_T0021188.1 MGP_C3HHeJ_G0016103.1 mouse_genomes_project 1 94451727 94469140 + MGP_C3HHeJ_P0021188 Sned1 protein_coding protein_coding MGP_C3HHeJ_T0021189.1 MGP_C3HHeJ_G0016103.1 mouse_genomes_project 1 94457334 94469829 + Sned1 protein_coding retained_intron MGP_C3HHeJ_T0021190.1 MGP_C3HHeJ_G0016103.1 mouse_genomes_project 1 94469047 94469951 + Sned1 protein_coding retained_intron MGP_C3HHeJ_T0000354.1 MGP_C3HHeJ_G0000304.1 mouse_genomes_project 1 10870084 10878505 - TEC TEC MGP_C3HHeJ_T0012168.1 MGP_C3HHeJ_G0010272.1 mouse_genomes_project 1 148127383 148128379 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011156.1 MGP_C3HHeJ_G0009289.1 mouse_genomes_project 1 75100576 75100669 + Gm27507 misc_RNA misc_RNA MGP_C3HHeJ_T0020751.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86706029 86713907 + Spata3 protein_coding processed_transcript MGP_C3HHeJ_T0020752.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86707918 86718549 + Spata3 protein_coding processed_transcript MGP_C3HHeJ_T0020753.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86711177 86719259 + MGP_C3HHeJ_P0020753 Spata3 protein_coding protein_coding MGP_C3HHeJ_T0020754.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86711178 86713904 + MGP_C3HHeJ_P0020754 Spata3 protein_coding protein_coding MGP_C3HHeJ_T0020755.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86711181 86713906 + MGP_C3HHeJ_P0020755 Spata3 protein_coding protein_coding MGP_C3HHeJ_T0020756.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86711181 86719259 + MGP_C3HHeJ_P0020756 Spata3 protein_coding protein_coding MGP_C3HHeJ_T0020757.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86711181 86716411 + MGP_C3HHeJ_P0020757 Spata3 protein_coding protein_coding MGP_C3HHeJ_T0020758.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86711188 86719222 + MGP_C3HHeJ_P0020758 Spata3 protein_coding protein_coding MGP_C3HHeJ_T0020759.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86711195 86718563 + MGP_C3HHeJ_P0020759 Spata3 protein_coding protein_coding MGP_C3HHeJ_T0020760.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86711196 86713907 + MGP_C3HHeJ_P0020760 Spata3 protein_coding protein_coding MGP_C3HHeJ_T0020761.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86711340 86718565 + MGP_C3HHeJ_P0020761 Spata3 protein_coding protein_coding MGP_C3HHeJ_T0002856.1 MGP_C3HHeJ_G0002691.1 mouse_genomes_project 1 161912065 161982989 - Gm37679 antisense antisense MGP_C3HHeJ_T0012087.1 MGP_C3HHeJ_G0010191.1 mouse_genomes_project 1 110806049 110807176 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021705.1 MGP_C3HHeJ_G0016219.1 mouse_genomes_project 1 133547196 133551832 + Eif2d protein_coding retained_intron MGP_C3HHeJ_T0021706.1 MGP_C3HHeJ_G0016219.1 mouse_genomes_project 1 133547196 133570169 + MGP_C3HHeJ_P0021706 Eif2d protein_coding protein_coding MGP_C3HHeJ_T0021707.1 MGP_C3HHeJ_G0016219.1 mouse_genomes_project 1 133547196 133576303 + MGP_C3HHeJ_P0021707 Eif2d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021708.1 MGP_C3HHeJ_G0016219.1 mouse_genomes_project 1 133547196 133568930 + MGP_C3HHeJ_P0021708 Eif2d protein_coding protein_coding MGP_C3HHeJ_T0021709.1 MGP_C3HHeJ_G0016219.1 mouse_genomes_project 1 133547196 133576717 + MGP_C3HHeJ_P0021709 Eif2d protein_coding protein_coding MGP_C3HHeJ_T0021710.1 MGP_C3HHeJ_G0016219.1 mouse_genomes_project 1 133547196 133571542 + MGP_C3HHeJ_P0021710 Eif2d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021711.1 MGP_C3HHeJ_G0016219.1 mouse_genomes_project 1 133547196 133583969 + MGP_C3HHeJ_P0021711 Eif2d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021712.1 MGP_C3HHeJ_G0016219.1 mouse_genomes_project 1 133561557 133568201 + Eif2d protein_coding processed_transcript MGP_C3HHeJ_T0023675.1 MGP_C3HHeJ_G0016642.1 mouse_genomes_project 1 185989295 186010732 - MGP_C3HHeJ_P0023675 Ephx1 protein_coding protein_coding MGP_C3HHeJ_T0023676.1 MGP_C3HHeJ_G0016642.1 mouse_genomes_project 1 186003269 186032145 - MGP_C3HHeJ_P0023676 Ephx1 protein_coding protein_coding MGP_C3HHeJ_T0023677.1 MGP_C3HHeJ_G0016642.1 mouse_genomes_project 1 186003269 186032145 - MGP_C3HHeJ_P0023677 Ephx1 protein_coding protein_coding MGP_C3HHeJ_T0023678.1 MGP_C3HHeJ_G0016642.1 mouse_genomes_project 1 186010710 186035480 - MGP_C3HHeJ_P0023678 Ephx1 protein_coding protein_coding MGP_C3HHeJ_T0000381.1 MGP_C3HHeJ_G0000329.1 mouse_genomes_project 1 23290235 23293089 - TEC TEC MGP_C3HHeJ_T0021501.1 MGP_C3HHeJ_G0016172.1 mouse_genomes_project 1 122147856 122155483 - MGP_C3HHeJ_P0021501 Dbi protein_coding protein_coding MGP_C3HHeJ_T0021502.1 MGP_C3HHeJ_G0016172.1 mouse_genomes_project 1 122147860 122155547 - MGP_C3HHeJ_P0021502 Dbi protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021503.1 MGP_C3HHeJ_G0016172.1 mouse_genomes_project 1 122147939 122154700 - Dbi protein_coding processed_transcript MGP_C3HHeJ_T0021504.1 MGP_C3HHeJ_G0016172.1 mouse_genomes_project 1 122147970 122155467 - MGP_C3HHeJ_P0021504 Dbi protein_coding protein_coding MGP_C3HHeJ_T0021505.1 MGP_C3HHeJ_G0016172.1 mouse_genomes_project 1 122150580 122155577 - Dbi protein_coding retained_intron MGP_C3HHeJ_T0021506.1 MGP_C3HHeJ_G0016172.1 mouse_genomes_project 1 122154287 122155544 - Dbi protein_coding retained_intron MGP_C3HHeJ_T0018586.1 MGP_C3HHeJ_G0015595.1 mouse_genomes_project 1 6659882 6661925 + MGP_C3HHeJ_P0018586 Rrs1 protein_coding protein_coding MGP_C3HHeJ_T0021521.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123353399 123376926 - MGP_C3HHeJ_P0021521 Insig2 protein_coding protein_coding MGP_C3HHeJ_T0021522.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123354951 123356375 - Insig2 protein_coding retained_intron MGP_C3HHeJ_T0021523.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123354982 123376938 - MGP_C3HHeJ_P0021523 Insig2 protein_coding protein_coding MGP_C3HHeJ_T0021524.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123355936 123361489 - Insig2 protein_coding retained_intron MGP_C3HHeJ_T0021525.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123355993 123376910 - MGP_C3HHeJ_P0021525 Insig2 protein_coding protein_coding MGP_C3HHeJ_T0021526.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123356293 123372266 - MGP_C3HHeJ_P0021526 Insig2 protein_coding protein_coding MGP_C3HHeJ_T0021527.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123360920 123368803 - Insig2 protein_coding retained_intron MGP_C3HHeJ_T0021528.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123368738 123376827 - MGP_C3HHeJ_P0021528 Insig2 protein_coding protein_coding MGP_C3HHeJ_T0021529.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123368808 123376833 - MGP_C3HHeJ_P0021529 Insig2 protein_coding protein_coding MGP_C3HHeJ_T0021530.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123368835 123381708 - MGP_C3HHeJ_P0021530 Insig2 protein_coding protein_coding MGP_C3HHeJ_T0000349.1 MGP_C3HHeJ_G0000299.1 mouse_genomes_project 1 10466990 10468606 - TEC TEC MGP_C3HHeJ_T0005978.1 MGP_C3HHeJ_G0004996.1 mouse_genomes_project 1 196362822 196364808 + Gm31373 lincRNA lincRNA MGP_C3HHeJ_T0000643.1 MGP_C3HHeJ_G0000588.1 mouse_genomes_project 1 150567263 150572061 + TEC TEC MGP_C3HHeJ_T0020172.1 MGP_C3HHeJ_G0015897.1 mouse_genomes_project 1 72387116 72440730 - MGP_C3HHeJ_P0020172 Mreg protein_coding protein_coding MGP_C3HHeJ_T0011783.1 MGP_C3HHeJ_G0009887.1 mouse_genomes_project 1 6363911 6364429 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005835.1 MGP_C3HHeJ_G0004885.1 mouse_genomes_project 1 137179460 137183713 - Gm26783 lincRNA lincRNA MGP_C3HHeJ_T0002688.1 MGP_C3HHeJ_G0002564.1 mouse_genomes_project 1 7114746 7125956 + Gm15818 antisense antisense MGP_C3HHeJ_T0012208.1 MGP_C3HHeJ_G0010312.1 mouse_genomes_project 1 165324530 165326120 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019246.1 MGP_C3HHeJ_G0015723.1 mouse_genomes_project 1 37257375 37290926 - MGP_C3HHeJ_P0019246 Chst10 protein_coding protein_coding MGP_C3HHeJ_T0019247.1 MGP_C3HHeJ_G0015723.1 mouse_genomes_project 1 37257375 37290847 - MGP_C3HHeJ_P0019247 Chst10 protein_coding protein_coding MGP_C3HHeJ_T0019248.1 MGP_C3HHeJ_G0015723.1 mouse_genomes_project 1 37257383 37265145 - MGP_C3HHeJ_P0019248 Chst10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019249.1 MGP_C3HHeJ_G0015723.1 mouse_genomes_project 1 37257385 37290998 - MGP_C3HHeJ_P0019249 Chst10 protein_coding protein_coding MGP_C3HHeJ_T0019250.1 MGP_C3HHeJ_G0015723.1 mouse_genomes_project 1 37263565 37290990 - MGP_C3HHeJ_P0019250 Chst10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019251.1 MGP_C3HHeJ_G0015723.1 mouse_genomes_project 1 37267344 37290971 - MGP_C3HHeJ_P0019251 Chst10 protein_coding protein_coding MGP_C3HHeJ_T0019252.1 MGP_C3HHeJ_G0015723.1 mouse_genomes_project 1 37283390 37290823 - Chst10 protein_coding retained_intron MGP_C3HHeJ_T0019253.1 MGP_C3HHeJ_G0015723.1 mouse_genomes_project 1 37283391 37290847 - Chst10 protein_coding retained_intron MGP_C3HHeJ_T0023118.1 MGP_C3HHeJ_G0016505.1 mouse_genomes_project 1 175022728 175035982 + MGP_C3HHeJ_P0023118 Cfap126 protein_coding protein_coding MGP_C3HHeJ_T0023119.1 MGP_C3HHeJ_G0016505.1 mouse_genomes_project 1 175022799 175035932 + MGP_C3HHeJ_P0023119 Cfap126 protein_coding protein_coding MGP_C3HHeJ_T0023120.1 MGP_C3HHeJ_G0016505.1 mouse_genomes_project 1 175030947 175036120 + MGP_C3HHeJ_P0023120 Cfap126 protein_coding protein_coding MGP_C3HHeJ_T0023121.1 MGP_C3HHeJ_G0016505.1 mouse_genomes_project 1 175030950 175032425 + Cfap126 protein_coding processed_transcript MGP_C3HHeJ_T0023122.1 MGP_C3HHeJ_G0016505.1 mouse_genomes_project 1 175031945 175035192 + MGP_C3HHeJ_P0023122 Cfap126 protein_coding protein_coding MGP_C3HHeJ_T0023123.1 MGP_C3HHeJ_G0016505.1 mouse_genomes_project 1 175032418 175036095 + MGP_C3HHeJ_P0023123 Cfap126 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023124.1 MGP_C3HHeJ_G0016505.1 mouse_genomes_project 1 175032442 175035236 + MGP_C3HHeJ_P0023124 Cfap126 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023125.1 MGP_C3HHeJ_G0016505.1 mouse_genomes_project 1 175034220 175035812 + MGP_C3HHeJ_P0023125 Cfap126 protein_coding protein_coding MGP_C3HHeJ_T0098661.1 MGP_C3HHeJ_G0036855.1 mouse_genomes_project 1 154213137 154213244 - Gm22756 snRNA snRNA MGP_C3HHeJ_T0022930.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169177319 169263111 + MGP_C3HHeJ_P0022930 Adcy10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022931.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169177319 169262506 + MGP_C3HHeJ_P0022931 Adcy10 protein_coding protein_coding MGP_C3HHeJ_T0022932.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169177319 169263481 + MGP_C3HHeJ_P0022932 Adcy10 protein_coding protein_coding MGP_C3HHeJ_T0022933.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169177325 169262505 + MGP_C3HHeJ_P0022933 Adcy10 protein_coding protein_coding MGP_C3HHeJ_T0022934.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169177329 169181677 + Adcy10 protein_coding processed_transcript MGP_C3HHeJ_T0022935.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169177347 169262503 + MGP_C3HHeJ_P0022935 Adcy10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022936.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169196069 169254453 + MGP_C3HHeJ_P0022936 Adcy10 protein_coding protein_coding MGP_C3HHeJ_T0022937.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169201824 169229986 + Adcy10 protein_coding retained_intron MGP_C3HHeJ_T0022938.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169209606 169211418 + Adcy10 protein_coding retained_intron MGP_C3HHeJ_T0022939.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169229809 169238013 + Adcy10 protein_coding processed_transcript MGP_C3HHeJ_T0000720.1 MGP_C3HHeJ_G0000665.1 mouse_genomes_project 1 181525019 181525742 + TEC TEC MGP_C3HHeJ_T0012232.1 MGP_C3HHeJ_G0010336.1 mouse_genomes_project 1 175959395 175959923 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019139.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35330020 35382073 + MGP_C3HHeJ_P0019139 Vwa3b protein_coding protein_coding MGP_C3HHeJ_T0019140.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35332717 35368891 + MGP_C3HHeJ_P0019140 Vwa3b protein_coding non_stop_decay MGP_C3HHeJ_T0019141.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35332729 35382072 + MGP_C3HHeJ_P0019141 Vwa3b protein_coding protein_coding MGP_C3HHeJ_T0019142.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35332797 35381802 + MGP_C3HHeJ_P0019142 Vwa3b protein_coding protein_coding MGP_C3HHeJ_T0019143.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35338742 35500640 + MGP_C3HHeJ_P0019143 Vwa3b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019144.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35338788 35501644 + MGP_C3HHeJ_P0019144 Vwa3b protein_coding unknown_likely_coding MGP_C3HHeJ_T0019145.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35406919 35415481 + Vwa3b protein_coding retained_intron MGP_C3HHeJ_T0019146.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35407056 35435296 + Vwa3b protein_coding processed_transcript MGP_C3HHeJ_T0019147.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35441810 35447652 + MGP_C3HHeJ_P0019147 Vwa3b protein_coding protein_coding MGP_C3HHeJ_T0019148.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35461272 35501636 + MGP_C3HHeJ_P0019148 Vwa3b protein_coding protein_coding MGP_C3HHeJ_T0019149.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35500885 35501644 + Vwa3b protein_coding retained_intron MGP_C3HHeJ_T0023089.1 MGP_C3HHeJ_G0016496.1 mouse_genomes_project 1 174500816 174540412 + MGP_C3HHeJ_P0023089 Olfml2b protein_coding protein_coding MGP_C3HHeJ_T0022742.1 MGP_C3HHeJ_G0016416.1 mouse_genomes_project 1 164701984 164724279 + MGP_C3HHeJ_P0022742 Ankrd45 protein_coding protein_coding MGP_C3HHeJ_T0022743.1 MGP_C3HHeJ_G0016416.1 mouse_genomes_project 1 164702005 164731211 + MGP_C3HHeJ_P0022743 Ankrd45 protein_coding protein_coding MGP_C3HHeJ_T0022744.1 MGP_C3HHeJ_G0016416.1 mouse_genomes_project 1 164702016 164728625 + MGP_C3HHeJ_P0022744 Ankrd45 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022745.1 MGP_C3HHeJ_G0016416.1 mouse_genomes_project 1 164702033 164725197 + MGP_C3HHeJ_P0022745 Ankrd45 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000343.1 MGP_C3HHeJ_G0000293.1 mouse_genomes_project 1 7603128 7605879 - TEC TEC MGP_C3HHeJ_T0005821.1 MGP_C3HHeJ_G0004872.1 mouse_genomes_project 1 127630884 127633705 + Gm28706 lincRNA lincRNA MGP_C3HHeJ_T0005606.1 MGP_C3HHeJ_G0004711.1 mouse_genomes_project 1 34228339 34232665 - Gm37146 lincRNA lincRNA MGP_C3HHeJ_T0005765.1 MGP_C3HHeJ_G0004828.1 mouse_genomes_project 1 93083069 93086647 + Gm26720 lincRNA lincRNA MGP_C3HHeJ_T0011950.1 MGP_C3HHeJ_G0010054.1 mouse_genomes_project 1 57103927 57104809 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022376.1 MGP_C3HHeJ_G0016353.1 mouse_genomes_project 1 155564683 155587897 - MGP_C3HHeJ_P0022376 Tsen15 protein_coding protein_coding MGP_C3HHeJ_T0022377.1 MGP_C3HHeJ_G0016353.1 mouse_genomes_project 1 155564786 155566031 - Tsen15 protein_coding retained_intron MGP_C3HHeJ_T0022378.1 MGP_C3HHeJ_G0016353.1 mouse_genomes_project 1 155565153 155587807 - MGP_C3HHeJ_P0022378 Tsen15 protein_coding protein_coding MGP_C3HHeJ_T0022379.1 MGP_C3HHeJ_G0016353.1 mouse_genomes_project 1 155565160 155578250 - Tsen15 protein_coding retained_intron MGP_C3HHeJ_T0022380.1 MGP_C3HHeJ_G0016353.1 mouse_genomes_project 1 155565723 155578597 - Tsen15 protein_coding retained_intron MGP_C3HHeJ_T0022381.1 MGP_C3HHeJ_G0016353.1 mouse_genomes_project 1 155577849 155587903 - Tsen15 protein_coding processed_transcript MGP_C3HHeJ_T0022382.1 MGP_C3HHeJ_G0016353.1 mouse_genomes_project 1 155578707 155587835 - Tsen15 protein_coding retained_intron MGP_C3HHeJ_T0011889.1 MGP_C3HHeJ_G0009993.1 mouse_genomes_project 1 38818953 38819638 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019769.1 MGP_C3HHeJ_G0015826.1 mouse_genomes_project 1 58299482 58637683 - MGP_C3HHeJ_P0019769 Als2cr12 protein_coding protein_coding MGP_C3HHeJ_T0019770.1 MGP_C3HHeJ_G0015826.1 mouse_genomes_project 1 58299482 58360538 - MGP_C3HHeJ_P0019770 Als2cr12 protein_coding protein_coding MGP_C3HHeJ_T0019771.1 MGP_C3HHeJ_G0015826.1 mouse_genomes_project 1 58299725 58360538 - MGP_C3HHeJ_P0019771 Als2cr12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019772.1 MGP_C3HHeJ_G0015826.1 mouse_genomes_project 1 58326101 58357501 - Als2cr12 protein_coding retained_intron MGP_C3HHeJ_T0023342.1 MGP_C3HHeJ_G0016552.1 mouse_genomes_project 1 176790771 176793987 + MGP_C3HHeJ_P0023342 Slamf9 protein_coding protein_coding MGP_C3HHeJ_T0020623.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 80960270 81227024 - MGP_C3HHeJ_P0020623 Dock10 protein_coding protein_coding MGP_C3HHeJ_T0020624.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 80960385 81059276 - MGP_C3HHeJ_P0020624 Dock10 protein_coding protein_coding MGP_C3HHeJ_T0020625.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 80960750 81137075 - MGP_C3HHeJ_P0020625 Dock10 protein_coding protein_coding MGP_C3HHeJ_T0020626.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 80960838 80989013 - MGP_C3HHeJ_P0020626 Dock10 protein_coding protein_coding MGP_C3HHeJ_T0020627.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 80960910 81137041 - MGP_C3HHeJ_P0020627 Dock10 protein_coding protein_coding MGP_C3HHeJ_T0020628.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 80962088 80965537 - Dock10 protein_coding retained_intron MGP_C3HHeJ_T0020629.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 80979669 80981549 - Dock10 protein_coding retained_intron MGP_C3HHeJ_T0020630.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 81048380 81227103 - Dock10 protein_coding retained_intron MGP_C3HHeJ_T0020631.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 81052082 81173655 - MGP_C3HHeJ_P0020631 Dock10 protein_coding protein_coding MGP_C3HHeJ_T0020632.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 81059044 81137058 - MGP_C3HHeJ_P0020632 Dock10 protein_coding protein_coding MGP_C3HHeJ_T0020633.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 81116175 81227063 - Dock10 protein_coding retained_intron MGP_C3HHeJ_T0020690.1 MGP_C3HHeJ_G0015994.1 mouse_genomes_project 1 84635396 84884127 - MGP_C3HHeJ_P0020690 Pid1 protein_coding protein_coding MGP_C3HHeJ_T0020691.1 MGP_C3HHeJ_G0015994.1 mouse_genomes_project 1 84636331 84936666 - MGP_C3HHeJ_P0020691 Pid1 protein_coding protein_coding MGP_C3HHeJ_T0020692.1 MGP_C3HHeJ_G0015994.1 mouse_genomes_project 1 84637026 84653137 - Pid1 protein_coding processed_transcript MGP_C3HHeJ_T0020693.1 MGP_C3HHeJ_G0015994.1 mouse_genomes_project 1 84680286 84883905 - MGP_C3HHeJ_P0020693 Pid1 protein_coding protein_coding MGP_C3HHeJ_T0020694.1 MGP_C3HHeJ_G0015994.1 mouse_genomes_project 1 84713232 84968998 - MGP_C3HHeJ_P0020694 Pid1 protein_coding protein_coding MGP_C3HHeJ_T0020695.1 MGP_C3HHeJ_G0015994.1 mouse_genomes_project 1 84720770 84944281 - MGP_C3HHeJ_P0020695 Pid1 protein_coding protein_coding MGP_C3HHeJ_T0020696.1 MGP_C3HHeJ_G0015994.1 mouse_genomes_project 1 84761072 84884093 - MGP_C3HHeJ_P0020696 Pid1 protein_coding protein_coding MGP_C3HHeJ_T0020697.1 MGP_C3HHeJ_G0015994.1 mouse_genomes_project 1 84882674 84884105 - Pid1 protein_coding retained_intron MGP_C3HHeJ_T0000708.1 MGP_C3HHeJ_G0000653.1 mouse_genomes_project 1 172474917 172475526 - TEC TEC MGP_C3HHeJ_T0020964.1 MGP_C3HHeJ_G0016052.1 mouse_genomes_project 1 89379870 89393372 + MGP_C3HHeJ_P0020964 Spp2 protein_coding protein_coding MGP_C3HHeJ_T0020965.1 MGP_C3HHeJ_G0016052.1 mouse_genomes_project 1 89380126 89399124 + MGP_C3HHeJ_P0020965 Spp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011789.1 MGP_C3HHeJ_G0009893.1 mouse_genomes_project 1 6660018 6661028 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000416.1 MGP_C3HHeJ_G0000363.1 mouse_genomes_project 1 35221790 35225471 - TEC TEC MGP_C3HHeJ_T0023114.1 MGP_C3HHeJ_G0016503.1 mouse_genomes_project 1 174894076 174905360 + MGP_C3HHeJ_P0023114 Fcgr4 protein_coding protein_coding MGP_C3HHeJ_T0098321.1 MGP_C3HHeJ_G0036532.1 mouse_genomes_project 1 90566694 90574532 + Gm28499 sense_intronic sense_intronic MGP_C3HHeJ_T0023566.1 MGP_C3HHeJ_G0016623.1 mouse_genomes_project 1 184595374 184619907 + MGP_C3HHeJ_P0023566 Sccpdh protein_coding protein_coding MGP_C3HHeJ_T0023567.1 MGP_C3HHeJ_G0016623.1 mouse_genomes_project 1 184595374 184619907 + MGP_C3HHeJ_P0023567 Sccpdh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023568.1 MGP_C3HHeJ_G0016623.1 mouse_genomes_project 1 184595424 184605553 + Sccpdh protein_coding retained_intron MGP_C3HHeJ_T0023569.1 MGP_C3HHeJ_G0016623.1 mouse_genomes_project 1 184612103 184619543 + MGP_C3HHeJ_P0023569 Sccpdh protein_coding protein_coding MGP_C3HHeJ_T0023570.1 MGP_C3HHeJ_G0016623.1 mouse_genomes_project 1 184612132 184617209 + MGP_C3HHeJ_P0023570 Sccpdh protein_coding protein_coding MGP_C3HHeJ_T0023571.1 MGP_C3HHeJ_G0016623.1 mouse_genomes_project 1 184616562 184619551 + Sccpdh protein_coding retained_intron MGP_C3HHeJ_T0020798.1 MGP_C3HHeJ_G0016013.1 mouse_genomes_project 1 87097371 87099283 - MGP_C3HHeJ_P0020798 Nmur1 protein_coding protein_coding MGP_C3HHeJ_T0000540.1 MGP_C3HHeJ_G0000487.1 mouse_genomes_project 1 96579409 96581947 + TEC TEC MGP_C3HHeJ_T0000497.1 MGP_C3HHeJ_G0000444.1 mouse_genomes_project 1 80579455 80581284 - TEC TEC MGP_C3HHeJ_T0005767.1 MGP_C3HHeJ_G0004830.1 mouse_genomes_project 1 93729509 93739424 + lincRNA lincRNA MGP_C3HHeJ_T0020800.1 MGP_C3HHeJ_G0016015.1 mouse_genomes_project 1 87264623 87267412 + MGP_C3HHeJ_P0020800 protein_coding protein_coding MGP_C3HHeJ_T0020801.1 MGP_C3HHeJ_G0016015.1 mouse_genomes_project 1 87264627 87267630 + protein_coding processed_transcript MGP_C3HHeJ_T0020802.1 MGP_C3HHeJ_G0016015.1 mouse_genomes_project 1 87264693 87267951 + MGP_C3HHeJ_P0020802 protein_coding protein_coding MGP_C3HHeJ_T0020803.1 MGP_C3HHeJ_G0016015.1 mouse_genomes_project 1 87264791 87267897 + MGP_C3HHeJ_P0020803 protein_coding unknown_likely_coding MGP_C3HHeJ_T0011913.1 MGP_C3HHeJ_G0010017.1 mouse_genomes_project 1 44758533 44759607 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002875.1 MGP_C3HHeJ_G0002705.1 mouse_genomes_project 1 169561947 169562837 - Gm37469 antisense antisense MGP_C3HHeJ_T0021566.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128113282 129043860 - MGP_C3HHeJ_P0021566 Nckap5 protein_coding protein_coding MGP_C3HHeJ_T0021567.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128113282 129043860 - MGP_C3HHeJ_P0021567 Nckap5 protein_coding protein_coding MGP_C3HHeJ_T0021568.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128113293 128711501 - MGP_C3HHeJ_P0021568 Nckap5 protein_coding protein_coding MGP_C3HHeJ_T0021569.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128113965 128169819 - Nckap5 protein_coding processed_transcript MGP_C3HHeJ_T0021570.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128114387 128669244 - MGP_C3HHeJ_P0021570 Nckap5 protein_coding protein_coding MGP_C3HHeJ_T0021571.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128114387 128666150 - MGP_C3HHeJ_P0021571 Nckap5 protein_coding protein_coding MGP_C3HHeJ_T0021572.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128114604 128227287 - MGP_C3HHeJ_P0021572 Nckap5 protein_coding protein_coding MGP_C3HHeJ_T0021573.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128232050 128239693 - Nckap5 protein_coding processed_transcript MGP_C3HHeJ_T0021574.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128439692 129044027 - MGP_C3HHeJ_P0021574 Nckap5 protein_coding protein_coding MGP_C3HHeJ_T0021575.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128476810 128958349 - MGP_C3HHeJ_P0021575 Nckap5 protein_coding protein_coding MGP_C3HHeJ_T0021576.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128748274 128958337 - Nckap5 protein_coding retained_intron MGP_C3HHeJ_T0021577.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128750816 129043709 - Nckap5 protein_coding retained_intron MGP_C3HHeJ_T0101545.1 MGP_C3HHeJ_G0039511.1 mouse_genomes_project 1 18861361 18862473 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009393.1 MGP_C3HHeJ_G0007526.1 mouse_genomes_project 1 34776517 34776658 + miRNA miRNA MGP_C3HHeJ_T0000324.1 MGP_C3HHeJ_G0000274.1 mouse_genomes_project 1 553256 555313 - TEC TEC MGP_C3HHeJ_T0021875.1 MGP_C3HHeJ_G0016251.1 mouse_genomes_project 1 135787394 135801297 + MGP_C3HHeJ_P0021875 Golt1a protein_coding protein_coding MGP_C3HHeJ_T0021880.1 MGP_C3HHeJ_G0016251.1 mouse_genomes_project 1 135787484 135799321 + MGP_C3HHeJ_P0021880 Golt1a protein_coding protein_coding MGP_C3HHeJ_T0023060.1 MGP_C3HHeJ_G0016489.1 mouse_genomes_project 1 173806070 173946918 - MGP_C3HHeJ_P0023060 Ddr2 protein_coding protein_coding MGP_C3HHeJ_T0023061.1 MGP_C3HHeJ_G0016489.1 mouse_genomes_project 1 173806071 173924010 - MGP_C3HHeJ_P0023061 Ddr2 protein_coding protein_coding MGP_C3HHeJ_T0023062.1 MGP_C3HHeJ_G0016489.1 mouse_genomes_project 1 173811713 173946858 - MGP_C3HHeJ_P0023062 Ddr2 protein_coding protein_coding MGP_C3HHeJ_T0023063.1 MGP_C3HHeJ_G0016489.1 mouse_genomes_project 1 173838584 173947086 - MGP_C3HHeJ_P0023063 Ddr2 protein_coding protein_coding MGP_C3HHeJ_T0023064.1 MGP_C3HHeJ_G0016489.1 mouse_genomes_project 1 173871109 173947119 - Ddr2 protein_coding retained_intron MGP_C3HHeJ_T0023065.1 MGP_C3HHeJ_G0016489.1 mouse_genomes_project 1 173918721 173933191 - Ddr2 protein_coding processed_transcript MGP_C3HHeJ_T0021976.1 MGP_C3HHeJ_G0016276.1 mouse_genomes_project 1 136938709 136956652 + MGP_C3HHeJ_P0021976 Adipor1 protein_coding protein_coding MGP_C3HHeJ_T0021977.1 MGP_C3HHeJ_G0016276.1 mouse_genomes_project 1 136938787 136956649 + MGP_C3HHeJ_P0021977 Adipor1 protein_coding protein_coding MGP_C3HHeJ_T0021978.1 MGP_C3HHeJ_G0016276.1 mouse_genomes_project 1 136938802 136939272 + Adipor1 protein_coding processed_transcript MGP_C3HHeJ_T0021979.1 MGP_C3HHeJ_G0016276.1 mouse_genomes_project 1 136938895 136950230 + Adipor1 protein_coding retained_intron MGP_C3HHeJ_T0018746.1 MGP_C3HHeJ_G0015624.1 mouse_genomes_project 1 13450959 13451747 - Rpl7 protein_coding processed_transcript MGP_C3HHeJ_T0018747.1 MGP_C3HHeJ_G0015624.1 mouse_genomes_project 1 13450959 13454221 - MGP_C3HHeJ_P0018747 Rpl7 protein_coding protein_coding MGP_C3HHeJ_T0018748.1 MGP_C3HHeJ_G0015624.1 mouse_genomes_project 1 13450970 13453975 - Rpl7 protein_coding retained_intron MGP_C3HHeJ_T0018749.1 MGP_C3HHeJ_G0015624.1 mouse_genomes_project 1 13451192 13452421 - Rpl7 protein_coding retained_intron MGP_C3HHeJ_T0018750.1 MGP_C3HHeJ_G0015624.1 mouse_genomes_project 1 13452155 13453957 - Rpl7 protein_coding retained_intron MGP_C3HHeJ_T0020334.1 MGP_C3HHeJ_G0015929.1 mouse_genomes_project 1 75046412 75073768 + MGP_C3HHeJ_P0020334 Cyp27a1 protein_coding protein_coding MGP_C3HHeJ_T0020335.1 MGP_C3HHeJ_G0015929.1 mouse_genomes_project 1 75071226 75072592 + Cyp27a1 protein_coding retained_intron MGP_C3HHeJ_T0020336.1 MGP_C3HHeJ_G0015929.1 mouse_genomes_project 1 75072684 75073699 + Cyp27a1 protein_coding retained_intron MGP_C3HHeJ_T0012247.1 MGP_C3HHeJ_G0010351.1 mouse_genomes_project 1 186120357 186121494 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021382.1 MGP_C3HHeJ_G0016145.1 mouse_genomes_project 1 108869459 109019348 - MGP_C3HHeJ_P0021382 Serpinb3b protein_coding protein_coding MGP_C3HHeJ_T0021383.1 MGP_C3HHeJ_G0016145.1 mouse_genomes_project 1 108993031 109000196 - MGP_C3HHeJ_P0021383 Serpinb3b protein_coding protein_coding MGP_C3HHeJ_T0005751.1 MGP_C3HHeJ_G0004814.1 mouse_genomes_project 1 89857665 89866222 - Gm29337 lincRNA lincRNA MGP_C3HHeJ_T0021681.1 MGP_C3HHeJ_G0016210.1 mouse_genomes_project 1 133181950 133195790 + MGP_C3HHeJ_P0021681 Fcamr protein_coding protein_coding MGP_C3HHeJ_T0021682.1 MGP_C3HHeJ_G0016210.1 mouse_genomes_project 1 133181950 133195758 + MGP_C3HHeJ_P0021682 Fcamr protein_coding protein_coding MGP_C3HHeJ_T0022718.1 MGP_C3HHeJ_G0016413.1 mouse_genomes_project 1 164593233 164623057 - MGP_C3HHeJ_P0022718 Dars2 protein_coding protein_coding MGP_C3HHeJ_T0022719.1 MGP_C3HHeJ_G0016413.1 mouse_genomes_project 1 164593814 164623041 - Dars2 protein_coding retained_intron MGP_C3HHeJ_T0022720.1 MGP_C3HHeJ_G0016413.1 mouse_genomes_project 1 164594123 164599590 - Dars2 protein_coding processed_transcript MGP_C3HHeJ_T0022721.1 MGP_C3HHeJ_G0016413.1 mouse_genomes_project 1 164594129 164623055 - Dars2 protein_coding retained_intron MGP_C3HHeJ_T0022722.1 MGP_C3HHeJ_G0016413.1 mouse_genomes_project 1 164597630 164623006 - Dars2 protein_coding retained_intron MGP_C3HHeJ_T0022723.1 MGP_C3HHeJ_G0016413.1 mouse_genomes_project 1 164615009 164616040 - Dars2 protein_coding retained_intron MGP_C3HHeJ_T0022724.1 MGP_C3HHeJ_G0016413.1 mouse_genomes_project 1 164615368 164623029 - Dars2 protein_coding processed_transcript MGP_C3HHeJ_T0019558.1 MGP_C3HHeJ_G0015785.1 mouse_genomes_project 1 52293930 52300370 + MGP_C3HHeJ_P0019558 Mstn protein_coding protein_coding MGP_C3HHeJ_T0019559.1 MGP_C3HHeJ_G0015785.1 mouse_genomes_project 1 52293947 52300336 + MGP_C3HHeJ_P0019559 Mstn protein_coding protein_coding MGP_C3HHeJ_T0011945.1 MGP_C3HHeJ_G0010049.1 mouse_genomes_project 1 54654430 54659177 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023661.1 MGP_C3HHeJ_G0016639.1 mouse_genomes_project 1 185912761 185916557 + MGP_C3HHeJ_P0023661 Pycr2 protein_coding protein_coding MGP_C3HHeJ_T0023662.1 MGP_C3HHeJ_G0016639.1 mouse_genomes_project 1 185912777 185915088 + Pycr2 protein_coding retained_intron MGP_C3HHeJ_T0023663.1 MGP_C3HHeJ_G0016639.1 mouse_genomes_project 1 185912791 185916556 + Pycr2 protein_coding retained_intron MGP_C3HHeJ_T0023664.1 MGP_C3HHeJ_G0016639.1 mouse_genomes_project 1 185914383 185915371 + Pycr2 protein_coding retained_intron MGP_C3HHeJ_T0022838.1 MGP_C3HHeJ_G0016434.1 mouse_genomes_project 1 166552695 166582903 - MGP_C3HHeJ_P0022838 Fmo3 protein_coding protein_coding MGP_C3HHeJ_T0022839.1 MGP_C3HHeJ_G0016434.1 mouse_genomes_project 1 166563169 166582904 - Fmo3 protein_coding retained_intron MGP_C3HHeJ_T0002897.1 MGP_C3HHeJ_G0002723.1 mouse_genomes_project 1 183187821 183193118 - B230369F24Rik antisense antisense MGP_C3HHeJ_T0005876.1 MGP_C3HHeJ_G0004917.1 mouse_genomes_project 1 158335979 158383806 - Gm29282 lincRNA lincRNA MGP_C3HHeJ_T0023508.1 MGP_C3HHeJ_G0016608.1 mouse_genomes_project 1 181447544 181589371 + Sdccag8 protein_coding retained_intron MGP_C3HHeJ_T0023509.1 MGP_C3HHeJ_G0016608.1 mouse_genomes_project 1 181447544 181478814 + Sdccag8 protein_coding retained_intron MGP_C3HHeJ_T0023510.1 MGP_C3HHeJ_G0016608.1 mouse_genomes_project 1 181447544 181493003 + MGP_C3HHeJ_P0023510 Sdccag8 protein_coding protein_coding MGP_C3HHeJ_T0023511.1 MGP_C3HHeJ_G0016608.1 mouse_genomes_project 1 181447544 181655363 + MGP_C3HHeJ_P0023511 Sdccag8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023512.1 MGP_C3HHeJ_G0016608.1 mouse_genomes_project 1 181447544 181655363 + MGP_C3HHeJ_P0023512 Sdccag8 protein_coding protein_coding MGP_C3HHeJ_T0023513.1 MGP_C3HHeJ_G0016608.1 mouse_genomes_project 1 181447873 181647621 + MGP_C3HHeJ_P0023513 Sdccag8 protein_coding unknown_likely_coding MGP_C3HHeJ_T0023514.1 MGP_C3HHeJ_G0016608.1 mouse_genomes_project 1 181632473 181655363 + Sdccag8 protein_coding processed_transcript MGP_C3HHeJ_T0023054.1 MGP_C3HHeJ_G0016487.1 mouse_genomes_project 1 173760343 173767805 + MGP_C3HHeJ_P0023054 Ccdc190 protein_coding protein_coding MGP_C3HHeJ_T0023055.1 MGP_C3HHeJ_G0016487.1 mouse_genomes_project 1 173761624 173767565 + MGP_C3HHeJ_P0023055 Ccdc190 protein_coding protein_coding MGP_C3HHeJ_T0021953.1 MGP_C3HHeJ_G0016271.1 mouse_genomes_project 1 136812750 136815310 + MGP_C3HHeJ_P0021953 Myog protein_coding protein_coding MGP_C3HHeJ_T0020832.1 MGP_C3HHeJ_G0016025.1 mouse_genomes_project 1 87994818 87995978 + Chrnd protein_coding retained_intron MGP_C3HHeJ_T0020833.1 MGP_C3HHeJ_G0016025.1 mouse_genomes_project 1 87994848 88005515 + MGP_C3HHeJ_P0020833 Chrnd protein_coding protein_coding MGP_C3HHeJ_T0020834.1 MGP_C3HHeJ_G0016025.1 mouse_genomes_project 1 87995055 88005514 + MGP_C3HHeJ_P0020834 Chrnd protein_coding protein_coding MGP_C3HHeJ_T0011979.1 MGP_C3HHeJ_G0010083.1 mouse_genomes_project 1 62931499 62931745 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011796.1 MGP_C3HHeJ_G0009900.1 mouse_genomes_project 1 8775382 8775644 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012128.1 MGP_C3HHeJ_G0010232.1 mouse_genomes_project 1 125424124 125424373 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011890.1 MGP_C3HHeJ_G0009994.1 mouse_genomes_project 1 39353351 39353847 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098326.1 MGP_C3HHeJ_G0036537.1 mouse_genomes_project 1 140639479 140640725 + Gm26930 sense_intronic sense_intronic MGP_C3HHeJ_T0005908.1 MGP_C3HHeJ_G0004941.1 mouse_genomes_project 1 169719961 169761503 + Gm26665 lincRNA lincRNA MGP_C3HHeJ_T0019307.1 MGP_C3HHeJ_G0015737.1 mouse_genomes_project 1 38782637 38787469 + Il1rl2 protein_coding retained_intron MGP_C3HHeJ_T0019308.1 MGP_C3HHeJ_G0015737.1 mouse_genomes_project 1 38782654 38830575 + MGP_C3HHeJ_P0019308 Il1rl2 protein_coding protein_coding MGP_C3HHeJ_T0019309.1 MGP_C3HHeJ_G0015737.1 mouse_genomes_project 1 38782717 38832666 + MGP_C3HHeJ_P0019309 Il1rl2 protein_coding protein_coding MGP_C3HHeJ_T0019310.1 MGP_C3HHeJ_G0015737.1 mouse_genomes_project 1 38783638 38787199 + MGP_C3HHeJ_P0019310 Il1rl2 protein_coding protein_coding MGP_C3HHeJ_T0005871.1 MGP_C3HHeJ_G0004914.1 mouse_genomes_project 1 157339905 157423908 - A830008E24Rik lincRNA lincRNA MGP_C3HHeJ_T0005872.1 MGP_C3HHeJ_G0004914.1 mouse_genomes_project 1 157350395 157425706 - A830008E24Rik lincRNA lincRNA MGP_C3HHeJ_T0012230.1 MGP_C3HHeJ_G0010334.1 mouse_genomes_project 1 175278488 175278824 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023343.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176797200 176804972 + MGP_C3HHeJ_P0023343 Igsf9 protein_coding protein_coding MGP_C3HHeJ_T0023344.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176797610 176807029 + MGP_C3HHeJ_P0023344 Igsf9 protein_coding protein_coding MGP_C3HHeJ_T0023345.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176797617 176805009 + Igsf9 protein_coding processed_transcript MGP_C3HHeJ_T0023346.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176797626 176814259 + MGP_C3HHeJ_P0023346 Igsf9 protein_coding protein_coding MGP_C3HHeJ_T0023347.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176797631 176805192 + Igsf9 protein_coding retained_intron MGP_C3HHeJ_T0023348.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176797631 176806419 + Igsf9 protein_coding retained_intron MGP_C3HHeJ_T0023349.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176797642 176814259 + MGP_C3HHeJ_P0023349 Igsf9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023350.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176797725 176814260 + MGP_C3HHeJ_P0023350 Igsf9 protein_coding protein_coding MGP_C3HHeJ_T0023351.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176806474 176807368 + Igsf9 protein_coding retained_intron MGP_C3HHeJ_T0023352.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176807351 176810255 + MGP_C3HHeJ_P0023352 Igsf9 protein_coding protein_coding MGP_C3HHeJ_T0023353.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176809322 176811117 + Igsf9 protein_coding retained_intron MGP_C3HHeJ_T0023354.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176809349 176811143 + Igsf9 protein_coding retained_intron MGP_C3HHeJ_T0023355.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176810147 176811605 + Igsf9 protein_coding retained_intron MGP_C3HHeJ_T0023356.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176813174 176813996 + Igsf9 protein_coding retained_intron MGP_C3HHeJ_T0101553.1 MGP_C3HHeJ_G0039519.1 mouse_genomes_project 1 65355572 65356252 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0021637.1 MGP_C3HHeJ_G0016198.1 mouse_genomes_project 1 130578300 130607332 - MGP_C3HHeJ_P0021637 Mcm6 protein_coding protein_coding MGP_C3HHeJ_T0021638.1 MGP_C3HHeJ_G0016198.1 mouse_genomes_project 1 130578303 130607315 - MGP_C3HHeJ_P0021638 Mcm6 protein_coding protein_coding MGP_C3HHeJ_T0021639.1 MGP_C3HHeJ_G0016198.1 mouse_genomes_project 1 130586107 130593344 - Mcm6 protein_coding retained_intron MGP_C3HHeJ_T0021640.1 MGP_C3HHeJ_G0016198.1 mouse_genomes_project 1 130587662 130590765 - Mcm6 protein_coding retained_intron MGP_C3HHeJ_T0002701.1 MGP_C3HHeJ_G0002572.1 mouse_genomes_project 1 15157586 15228001 - Gm28153 antisense antisense MGP_C3HHeJ_T0000389.1 MGP_C3HHeJ_G0000337.1 mouse_genomes_project 1 23479751 23483369 - TEC TEC MGP_C3HHeJ_T0022798.1 MGP_C3HHeJ_G0016427.1 mouse_genomes_project 1 166236757 166247232 + MGP_C3HHeJ_P0022798 Myoc protein_coding protein_coding MGP_C3HHeJ_T0011787.1 MGP_C3HHeJ_G0009891.1 mouse_genomes_project 1 6612507 6614692 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018933.1 MGP_C3HHeJ_G0015668.1 mouse_genomes_project 1 29160077 29259357 - MGP_C3HHeJ_P0018933 4931428L18Rik protein_coding protein_coding MGP_C3HHeJ_T0018934.1 MGP_C3HHeJ_G0015668.1 mouse_genomes_project 1 29166013 29259417 - MGP_C3HHeJ_P0018934 4931428L18Rik protein_coding protein_coding MGP_C3HHeJ_T0018935.1 MGP_C3HHeJ_G0015668.1 mouse_genomes_project 1 29166566 29259388 - MGP_C3HHeJ_P0018935 4931428L18Rik protein_coding protein_coding MGP_C3HHeJ_T0018938.1 MGP_C3HHeJ_G0015668.1 mouse_genomes_project 1 29240620 29259444 - MGP_C3HHeJ_P0018938 4931428L18Rik protein_coding protein_coding MGP_C3HHeJ_T0020724.1 MGP_C3HHeJ_G0015998.1 mouse_genomes_project 1 85524024 85552579 - MGP_C3HHeJ_P0020724 Slc16a14 protein_coding protein_coding MGP_C3HHeJ_T0020725.1 MGP_C3HHeJ_G0015998.1 mouse_genomes_project 1 85546940 85552302 - MGP_C3HHeJ_P0020725 Slc16a14 protein_coding protein_coding MGP_C3HHeJ_T0018738.1 MGP_C3HHeJ_G0015621.1 mouse_genomes_project 1 13152821 13195315 + MGP_C3HHeJ_P0018738 Terf1 protein_coding protein_coding MGP_C3HHeJ_T0018739.1 MGP_C3HHeJ_G0015621.1 mouse_genomes_project 1 13152832 13169000 + Terf1 protein_coding processed_transcript MGP_C3HHeJ_T0018740.1 MGP_C3HHeJ_G0015621.1 mouse_genomes_project 1 13152839 13194733 + MGP_C3HHeJ_P0018740 Terf1 protein_coding protein_coding MGP_C3HHeJ_T0018741.1 MGP_C3HHeJ_G0015621.1 mouse_genomes_project 1 13154817 13169088 + Terf1 protein_coding retained_intron MGP_C3HHeJ_T0016787.1 MGP_C3HHeJ_G0014866.1 mouse_genomes_project 1 90655626 90688972 - 4933400F21Rik processed_transcript antisense MGP_C3HHeJ_T0016788.1 MGP_C3HHeJ_G0014866.1 mouse_genomes_project 1 90682575 90688958 - 4933400F21Rik processed_transcript antisense MGP_C3HHeJ_T0016789.1 MGP_C3HHeJ_G0014866.1 mouse_genomes_project 1 90686173 90688952 - 4933400F21Rik processed_transcript retained_intron MGP_C3HHeJ_T0020570.1 MGP_C3HHeJ_G0015967.1 mouse_genomes_project 1 78811516 78882356 - MGP_C3HHeJ_P0020570 Farsb protein_coding protein_coding MGP_C3HHeJ_T0020571.1 MGP_C3HHeJ_G0015967.1 mouse_genomes_project 1 78818611 78882394 - MGP_C3HHeJ_P0020571 Farsb protein_coding protein_coding MGP_C3HHeJ_T0020572.1 MGP_C3HHeJ_G0015967.1 mouse_genomes_project 1 78818628 78882359 - MGP_C3HHeJ_P0020572 Farsb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020573.1 MGP_C3HHeJ_G0015967.1 mouse_genomes_project 1 78856503 78882356 - MGP_C3HHeJ_P0020573 Farsb protein_coding protein_coding MGP_C3HHeJ_T0020574.1 MGP_C3HHeJ_G0015967.1 mouse_genomes_project 1 78864697 78882292 - Farsb protein_coding processed_transcript MGP_C3HHeJ_T0020575.1 MGP_C3HHeJ_G0015967.1 mouse_genomes_project 1 78866083 78882339 - MGP_C3HHeJ_P0020575 Farsb protein_coding protein_coding MGP_C3HHeJ_T0020576.1 MGP_C3HHeJ_G0015967.1 mouse_genomes_project 1 78871368 78882334 - Farsb protein_coding retained_intron MGP_C3HHeJ_T0002696.1 MGP_C3HHeJ_G0002569.1 mouse_genomes_project 1 14431036 14491424 + antisense antisense MGP_C3HHeJ_T0020951.1 MGP_C3HHeJ_G0016047.1 mouse_genomes_project 1 89104775 89105826 - MGP_C3HHeJ_P0020951 Dnajb3 protein_coding protein_coding MGP_C3HHeJ_T0005741.1 MGP_C3HHeJ_G0004805.1 mouse_genomes_project 1 86454422 86464685 + 9930111H07Rik lincRNA lincRNA MGP_C3HHeJ_T0000437.1 MGP_C3HHeJ_G0000384.1 mouse_genomes_project 1 50756913 50759284 - TEC TEC MGP_C3HHeJ_T0000718.1 MGP_C3HHeJ_G0000663.1 mouse_genomes_project 1 180995344 180998899 - TEC TEC MGP_C3HHeJ_T0018849.1 MGP_C3HHeJ_G0015651.1 mouse_genomes_project 1 18918875 18922076 + MGP_C3HHeJ_P0018849 Khdc1b protein_coding protein_coding MGP_C3HHeJ_T0098651.1 MGP_C3HHeJ_G0036845.1 mouse_genomes_project 1 134529831 134529947 + Gm26034 snRNA snRNA MGP_C3HHeJ_T0099850.1 MGP_C3HHeJ_G0038044.1 mouse_genomes_project 1 59454393 59454477 + Gm26293 snoRNA snoRNA MGP_C3HHeJ_T0012132.1 MGP_C3HHeJ_G0010236.1 mouse_genomes_project 1 127856472 127857101 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000464.1 MGP_C3HHeJ_G0000411.1 mouse_genomes_project 1 61644188 61645108 + TEC TEC MGP_C3HHeJ_T0011937.1 MGP_C3HHeJ_G0010041.1 mouse_genomes_project 1 52109559 52110421 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023305.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176450988 176497885 + MGP_C3HHeJ_P0023305 Dcaf8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023306.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176450993 176492012 + Dcaf8 protein_coding retained_intron MGP_C3HHeJ_T0023307.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176451022 176498597 + MGP_C3HHeJ_P0023307 Dcaf8 protein_coding protein_coding MGP_C3HHeJ_T0023308.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176451044 176493238 + Dcaf8 protein_coding retained_intron MGP_C3HHeJ_T0023309.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176451046 176498556 + MGP_C3HHeJ_P0023309 Dcaf8 protein_coding protein_coding MGP_C3HHeJ_T0023310.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176451082 176499479 + MGP_C3HHeJ_P0023310 Dcaf8 protein_coding protein_coding MGP_C3HHeJ_T0023311.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176451849 176493238 + Dcaf8 protein_coding retained_intron MGP_C3HHeJ_T0023312.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176477986 176480231 + Dcaf8 protein_coding retained_intron MGP_C3HHeJ_T0023313.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176478090 176496012 + MGP_C3HHeJ_P0023313 Dcaf8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023314.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176482323 176486839 + Dcaf8 protein_coding retained_intron MGP_C3HHeJ_T0023315.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176490811 176500096 + MGP_C3HHeJ_P0023315 Dcaf8 protein_coding protein_coding MGP_C3HHeJ_T0000755.1 MGP_C3HHeJ_G0000698.1 mouse_genomes_project 1 192288962 192291261 - TEC TEC MGP_C3HHeJ_T0000394.1 MGP_C3HHeJ_G0000342.1 mouse_genomes_project 1 26419608 26421122 + TEC TEC MGP_C3HHeJ_T0000738.1 MGP_C3HHeJ_G0000682.1 mouse_genomes_project 1 186434271 186435582 + TEC TEC MGP_C3HHeJ_T0011808.1 MGP_C3HHeJ_G0009912.1 mouse_genomes_project 1 14153410 14155621 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019708.1 MGP_C3HHeJ_G0015816.1 mouse_genomes_project 1 57715835 57717715 + Aox3 protein_coding retained_intron MGP_C3HHeJ_T0019709.1 MGP_C3HHeJ_G0015816.1 mouse_genomes_project 1 57715841 57805342 + MGP_C3HHeJ_P0019709 Aox3 protein_coding protein_coding MGP_C3HHeJ_T0019710.1 MGP_C3HHeJ_G0015816.1 mouse_genomes_project 1 57715843 57724811 + Aox3 protein_coding retained_intron MGP_C3HHeJ_T0019711.1 MGP_C3HHeJ_G0015816.1 mouse_genomes_project 1 57715891 57742630 + MGP_C3HHeJ_P0019711 Aox3 protein_coding protein_coding MGP_C3HHeJ_T0019712.1 MGP_C3HHeJ_G0015816.1 mouse_genomes_project 1 57773840 57776464 + Aox3 protein_coding retained_intron MGP_C3HHeJ_T0000585.1 MGP_C3HHeJ_G0000532.1 mouse_genomes_project 1 130383092 130385835 + TEC TEC MGP_C3HHeJ_T0023735.1 MGP_C3HHeJ_G0016654.1 mouse_genomes_project 1 187419985 187450078 - MGP_C3HHeJ_P0023735 Fbxo28 protein_coding protein_coding MGP_C3HHeJ_T0023736.1 MGP_C3HHeJ_G0016654.1 mouse_genomes_project 1 187422071 187425271 - Fbxo28 protein_coding retained_intron MGP_C3HHeJ_T0023737.1 MGP_C3HHeJ_G0016654.1 mouse_genomes_project 1 187423346 187450060 - MGP_C3HHeJ_P0023737 Fbxo28 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023738.1 MGP_C3HHeJ_G0016654.1 mouse_genomes_project 1 187423874 187450031 - MGP_C3HHeJ_P0023738 Fbxo28 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023739.1 MGP_C3HHeJ_G0016654.1 mouse_genomes_project 1 187424127 187450089 - MGP_C3HHeJ_P0023739 Fbxo28 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005868.1 MGP_C3HHeJ_G0004912.1 mouse_genomes_project 1 157303427 157306249 - Gm29291 lincRNA lincRNA MGP_C3HHeJ_T0005869.1 MGP_C3HHeJ_G0004912.1 mouse_genomes_project 1 157303583 157306253 - Gm29291 lincRNA lincRNA MGP_C3HHeJ_T0009401.1 MGP_C3HHeJ_G0007534.1 mouse_genomes_project 1 52746053 52746178 - Gm25240 miRNA miRNA MGP_C3HHeJ_T0021277.1 MGP_C3HHeJ_G0016119.1 mouse_genomes_project 1 95272492 95286661 - MGP_C3HHeJ_P0021277 Pdcd1 protein_coding protein_coding MGP_C3HHeJ_T0005897.1 MGP_C3HHeJ_G0004933.1 mouse_genomes_project 1 168285122 168293504 + lincRNA lincRNA MGP_C3HHeJ_T0019270.1 MGP_C3HHeJ_G0015729.1 mouse_genomes_project 1 37973003 37987424 + MGP_C3HHeJ_P0019270 Cnot11 protein_coding protein_coding MGP_C3HHeJ_T0019271.1 MGP_C3HHeJ_G0015729.1 mouse_genomes_project 1 37973813 37987408 + MGP_C3HHeJ_P0019271 Cnot11 protein_coding protein_coding MGP_C3HHeJ_T0019272.1 MGP_C3HHeJ_G0015729.1 mouse_genomes_project 1 37976256 37987002 + Cnot11 protein_coding retained_intron MGP_C3HHeJ_T0019273.1 MGP_C3HHeJ_G0015729.1 mouse_genomes_project 1 37978051 37985920 + MGP_C3HHeJ_P0019273 Cnot11 protein_coding protein_coding MGP_C3HHeJ_T0012268.1 MGP_C3HHeJ_G0010372.1 mouse_genomes_project 1 196886993 196887458 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098628.1 MGP_C3HHeJ_G0036822.1 mouse_genomes_project 1 72471933 72472124 + Gm24497 snRNA snRNA MGP_C3HHeJ_T0099837.1 MGP_C3HHeJ_G0038031.1 mouse_genomes_project 1 37955181 37955396 + Gm24826 snoRNA snoRNA MGP_C3HHeJ_T0099844.1 MGP_C3HHeJ_G0038038.1 mouse_genomes_project 1 51164526 51164648 - Gm27607 snoRNA snoRNA MGP_C3HHeJ_T0000357.1 MGP_C3HHeJ_G0000307.1 mouse_genomes_project 1 11528439 11528878 - TEC TEC MGP_C3HHeJ_T0020057.1 MGP_C3HHeJ_G0015879.1 mouse_genomes_project 1 65219773 65285271 + MGP_C3HHeJ_P0020057 Pth2r protein_coding protein_coding MGP_C3HHeJ_T0020058.1 MGP_C3HHeJ_G0015879.1 mouse_genomes_project 1 65250720 65329086 + MGP_C3HHeJ_P0020058 Pth2r protein_coding protein_coding MGP_C3HHeJ_T0000435.1 MGP_C3HHeJ_G0000382.1 mouse_genomes_project 1 46528665 46530608 - TEC TEC MGP_C3HHeJ_T0000690.1 MGP_C3HHeJ_G0000635.1 mouse_genomes_project 1 164534881 164536049 + TEC TEC MGP_C3HHeJ_T0022675.1 MGP_C3HHeJ_G0016406.1 mouse_genomes_project 1 163564130 163649776 - MGP_C3HHeJ_P0022675 Tnn protein_coding protein_coding MGP_C3HHeJ_T0022676.1 MGP_C3HHeJ_G0016406.1 mouse_genomes_project 1 163565073 163644084 - MGP_C3HHeJ_P0022676 Tnn protein_coding protein_coding MGP_C3HHeJ_T0022677.1 MGP_C3HHeJ_G0016406.1 mouse_genomes_project 1 163565136 163644051 - MGP_C3HHeJ_P0022677 Tnn protein_coding unknown_likely_coding MGP_C3HHeJ_T0000650.1 MGP_C3HHeJ_G0000595.1 mouse_genomes_project 1 154621565 154624000 + TEC TEC MGP_C3HHeJ_T0098262.1 MGP_C3HHeJ_G0036474.1 mouse_genomes_project 1 129557144 129557273 + Gm23370 scaRNA scaRNA MGP_C3HHeJ_T0021410.1 MGP_C3HHeJ_G0016154.1 mouse_genomes_project 1 113737050 113743116 - Dsel protein_coding processed_transcript MGP_C3HHeJ_T0021411.1 MGP_C3HHeJ_G0016154.1 mouse_genomes_project 1 113737054 113743266 - MGP_C3HHeJ_P0021411 Dsel protein_coding protein_coding MGP_C3HHeJ_T0021412.1 MGP_C3HHeJ_G0016154.1 mouse_genomes_project 1 113741671 113743231 - Dsel protein_coding processed_transcript MGP_C3HHeJ_T0021413.1 MGP_C3HHeJ_G0016154.1 mouse_genomes_project 1 113742443 113743228 - Dsel protein_coding processed_transcript MGP_C3HHeJ_T0012220.1 MGP_C3HHeJ_G0010324.1 mouse_genomes_project 1 169767224 169767577 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000623.1 MGP_C3HHeJ_G0000568.1 mouse_genomes_project 1 140658697 140663933 + TEC TEC MGP_C3HHeJ_T0012179.1 MGP_C3HHeJ_G0010283.1 mouse_genomes_project 1 153133378 153135443 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021318.1 MGP_C3HHeJ_G0016129.1 mouse_genomes_project 1 99775203 99872593 + MGP_C3HHeJ_P0021318 Slco6d1 protein_coding protein_coding MGP_C3HHeJ_T0021319.1 MGP_C3HHeJ_G0016129.1 mouse_genomes_project 1 99775206 99880179 + MGP_C3HHeJ_P0021319 Slco6d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021320.1 MGP_C3HHeJ_G0016129.1 mouse_genomes_project 1 99775233 99872460 + MGP_C3HHeJ_P0021320 Slco6d1 protein_coding protein_coding MGP_C3HHeJ_T0021321.1 MGP_C3HHeJ_G0016129.1 mouse_genomes_project 1 99863079 99872596 + Slco6d1 protein_coding processed_transcript MGP_C3HHeJ_T0000392.1 MGP_C3HHeJ_G0000340.1 mouse_genomes_project 1 23507097 23507427 - TEC TEC MGP_C3HHeJ_T0000776.1 MGP_C3HHeJ_G0000718.1 mouse_genomes_project 1 200227719 200228251 + TEC TEC MGP_C3HHeJ_T0011150.1 MGP_C3HHeJ_G0009283.1 mouse_genomes_project 1 49394385 49394517 - Gm27330 misc_RNA misc_RNA MGP_C3HHeJ_T0002771.1 MGP_C3HHeJ_G0002624.1 mouse_genomes_project 1 75245476 75250773 + Gm15841 antisense antisense MGP_C3HHeJ_T0000476.1 MGP_C3HHeJ_G0000423.1 mouse_genomes_project 1 67991860 67994161 + TEC TEC MGP_C3HHeJ_T0020487.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75664168 75721717 + MGP_C3HHeJ_P0020487 Speg protein_coding protein_coding MGP_C3HHeJ_T0020488.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75670979 75693360 + MGP_C3HHeJ_P0020488 Speg protein_coding protein_coding MGP_C3HHeJ_T0020489.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75670979 75677141 + MGP_C3HHeJ_P0020489 Speg protein_coding protein_coding MGP_C3HHeJ_T0020490.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75670991 75672249 + Speg protein_coding retained_intron MGP_C3HHeJ_T0020491.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75671003 75676691 + MGP_C3HHeJ_P0020491 Speg protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020492.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75673403 75676744 + Speg protein_coding retained_intron MGP_C3HHeJ_T0020493.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75673531 75680719 + MGP_C3HHeJ_P0020493 Speg protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020494.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75674215 75677900 + Speg protein_coding processed_transcript MGP_C3HHeJ_T0020495.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75674313 75721700 + MGP_C3HHeJ_P0020495 Speg protein_coding protein_coding MGP_C3HHeJ_T0020496.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75688885 75692787 + MGP_C3HHeJ_P0020496 Speg protein_coding protein_coding MGP_C3HHeJ_T0020497.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75689321 75693167 + MGP_C3HHeJ_P0020497 Speg protein_coding protein_coding MGP_C3HHeJ_T0020498.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75689435 75693359 + MGP_C3HHeJ_P0020498 Speg protein_coding protein_coding MGP_C3HHeJ_T0020499.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75689810 75693004 + MGP_C3HHeJ_P0020499 Speg protein_coding protein_coding MGP_C3HHeJ_T0020500.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75712248 75717019 + Speg protein_coding retained_intron MGP_C3HHeJ_T0023977.1 MGP_C3HHeJ_G0016705.1 mouse_genomes_project 1 196745513 196796707 - MGP_C3HHeJ_P0023977 Ppp2r5a protein_coding protein_coding MGP_C3HHeJ_T0023978.1 MGP_C3HHeJ_G0016705.1 mouse_genomes_project 1 196751250 196752911 - Ppp2r5a protein_coding retained_intron MGP_C3HHeJ_T0023979.1 MGP_C3HHeJ_G0016705.1 mouse_genomes_project 1 196752779 196786142 - Ppp2r5a protein_coding processed_transcript MGP_C3HHeJ_T0023980.1 MGP_C3HHeJ_G0016705.1 mouse_genomes_project 1 196753405 196767487 - MGP_C3HHeJ_P0023980 Ppp2r5a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023981.1 MGP_C3HHeJ_G0016705.1 mouse_genomes_project 1 196758149 196767476 - Ppp2r5a protein_coding retained_intron MGP_C3HHeJ_T0023982.1 MGP_C3HHeJ_G0016705.1 mouse_genomes_project 1 196772491 196799097 - Ppp2r5a protein_coding processed_transcript MGP_C3HHeJ_T0023983.1 MGP_C3HHeJ_G0016705.1 mouse_genomes_project 1 196798453 196802864 - Ppp2r5a protein_coding retained_intron MGP_C3HHeJ_T0020547.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75842107 75843319 + Slc4a3 protein_coding retained_intron MGP_C3HHeJ_T0020548.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75842111 75857953 + MGP_C3HHeJ_P0020548 Slc4a3 protein_coding protein_coding MGP_C3HHeJ_T0020549.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75842273 75843850 + MGP_C3HHeJ_P0020549 Slc4a3 protein_coding protein_coding MGP_C3HHeJ_T0020550.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75842307 75854668 + MGP_C3HHeJ_P0020550 Slc4a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020551.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75842338 75843556 + Slc4a3 protein_coding retained_intron MGP_C3HHeJ_T0020552.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75842344 75843823 + MGP_C3HHeJ_P0020552 Slc4a3 protein_coding protein_coding MGP_C3HHeJ_T0020553.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75842455 75856660 + Slc4a3 protein_coding retained_intron MGP_C3HHeJ_T0020554.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75842467 75843346 + Slc4a3 protein_coding retained_intron MGP_C3HHeJ_T0020555.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75845410 75847194 + MGP_C3HHeJ_P0020555 Slc4a3 protein_coding protein_coding MGP_C3HHeJ_T0020556.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75845579 75846941 + Slc4a3 protein_coding retained_intron MGP_C3HHeJ_T0020557.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75846406 75850952 + MGP_C3HHeJ_P0020557 Slc4a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020558.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75847520 75849544 + MGP_C3HHeJ_P0020558 Slc4a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023485.1 MGP_C3HHeJ_G0016605.1 mouse_genomes_project 1 180558009 180891852 - MGP_C3HHeJ_P0023485 Pld5 protein_coding protein_coding MGP_C3HHeJ_T0023486.1 MGP_C3HHeJ_G0016605.1 mouse_genomes_project 1 180558110 180891866 - MGP_C3HHeJ_P0023486 Pld5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023487.1 MGP_C3HHeJ_G0016605.1 mouse_genomes_project 1 180559861 180828263 - MGP_C3HHeJ_P0023487 Pld5 protein_coding protein_coding MGP_C3HHeJ_T0023489.1 MGP_C3HHeJ_G0016605.1 mouse_genomes_project 1 180592578 180891829 - Pld5 protein_coding retained_intron MGP_C3HHeJ_T0023490.1 MGP_C3HHeJ_G0016605.1 mouse_genomes_project 1 180643626 180828162 - Pld5 protein_coding retained_intron MGP_C3HHeJ_T0023491.1 MGP_C3HHeJ_G0016605.1 mouse_genomes_project 1 180877313 180891828 - MGP_C3HHeJ_P0023491 Pld5 protein_coding protein_coding MGP_C3HHeJ_T0000556.1 MGP_C3HHeJ_G0000503.1 mouse_genomes_project 1 112780218 112785828 - TEC TEC MGP_C3HHeJ_T0098334.1 MGP_C3HHeJ_G0036545.1 mouse_genomes_project 1 168923109 168929294 - Gm38190 sense_intronic sense_intronic MGP_C3HHeJ_T0022383.1 MGP_C3HHeJ_G0016354.1 mouse_genomes_project 1 155600732 155709740 + MGP_C3HHeJ_P0022383 Colgalt2 protein_coding protein_coding MGP_C3HHeJ_T0022384.1 MGP_C3HHeJ_G0016354.1 mouse_genomes_project 1 155600732 155708863 + MGP_C3HHeJ_P0022384 Colgalt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005601.1 MGP_C3HHeJ_G0004707.1 mouse_genomes_project 1 32665948 32674868 - 4930568A12Rik lincRNA lincRNA MGP_C3HHeJ_T0005602.1 MGP_C3HHeJ_G0004707.1 mouse_genomes_project 1 32670238 32675190 - 4930568A12Rik lincRNA lincRNA MGP_C3HHeJ_T0021328.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107160362 107306579 - MGP_C3HHeJ_P0021328 Pign protein_coding protein_coding MGP_C3HHeJ_T0021329.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107160366 107311284 - MGP_C3HHeJ_P0021329 Pign protein_coding protein_coding MGP_C3HHeJ_T0021330.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107163109 107209536 - Pign protein_coding processed_transcript MGP_C3HHeJ_T0021331.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107192589 107311265 - MGP_C3HHeJ_P0021331 Pign protein_coding protein_coding MGP_C3HHeJ_T0021332.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107198791 107311284 - MGP_C3HHeJ_P0021332 Pign protein_coding protein_coding MGP_C3HHeJ_T0021333.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107294186 107311299 - Pign protein_coding retained_intron MGP_C3HHeJ_T0021334.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107294186 107311298 - Pign protein_coding retained_intron MGP_C3HHeJ_T0021335.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107294341 107297214 - Pign protein_coding retained_intron MGP_C3HHeJ_T0021336.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107305829 107311295 - Pign protein_coding retained_intron MGP_C3HHeJ_T0021337.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107306758 107311294 - Pign protein_coding retained_intron MGP_C3HHeJ_T0019300.1 MGP_C3HHeJ_G0015735.1 mouse_genomes_project 1 38536406 38575034 + MGP_C3HHeJ_P0019300 Il1r2 protein_coding protein_coding MGP_C3HHeJ_T0019301.1 MGP_C3HHeJ_G0015735.1 mouse_genomes_project 1 38547598 38591062 + MGP_C3HHeJ_P0019301 Il1r2 protein_coding protein_coding MGP_C3HHeJ_T0019302.1 MGP_C3HHeJ_G0015735.1 mouse_genomes_project 1 38547692 38591050 + MGP_C3HHeJ_P0019302 Il1r2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019303.1 MGP_C3HHeJ_G0015735.1 mouse_genomes_project 1 38548884 38565309 + MGP_C3HHeJ_P0019303 Il1r2 protein_coding protein_coding MGP_C3HHeJ_T0005590.1 MGP_C3HHeJ_G0004697.1 mouse_genomes_project 1 21173436 21197066 + Gm28822 lincRNA lincRNA MGP_C3HHeJ_T0021498.1 MGP_C3HHeJ_G0016170.1 mouse_genomes_project 1 122034454 122097477 + MGP_C3HHeJ_P0021498 Sctr protein_coding protein_coding MGP_C3HHeJ_T0021499.1 MGP_C3HHeJ_G0016170.1 mouse_genomes_project 1 122034594 122097475 + MGP_C3HHeJ_P0021499 Sctr protein_coding protein_coding MGP_C3HHeJ_T0019968.1 MGP_C3HHeJ_G0015857.1 mouse_genomes_project 1 63042064 63076506 - MGP_C3HHeJ_P0019968 Gpr1 protein_coding protein_coding MGP_C3HHeJ_T0019969.1 MGP_C3HHeJ_G0015857.1 mouse_genomes_project 1 63070662 63076186 - Gpr1 protein_coding processed_transcript MGP_C3HHeJ_T0002922.1 MGP_C3HHeJ_G0002745.1 mouse_genomes_project 1 195505628 195556097 + Prox1os antisense antisense MGP_C3HHeJ_T0000356.1 MGP_C3HHeJ_G0000306.1 mouse_genomes_project 1 11371177 11374782 - TEC TEC MGP_C3HHeJ_T0005605.1 MGP_C3HHeJ_G0004710.1 mouse_genomes_project 1 34119082 34120343 + 1110002O04Rik lincRNA lincRNA MGP_C3HHeJ_T0000567.1 MGP_C3HHeJ_G0000514.1 mouse_genomes_project 1 125510774 125514284 - TEC TEC MGP_C3HHeJ_T0002724.1 MGP_C3HHeJ_G0002591.1 mouse_genomes_project 1 37277465 37280873 + Gm37707 antisense antisense MGP_C3HHeJ_T0005783.1 MGP_C3HHeJ_G0004843.1 mouse_genomes_project 1 103400690 103402824 - Gm28187 lincRNA lincRNA MGP_C3HHeJ_T0018872.1 MGP_C3HHeJ_G0015656.1 mouse_genomes_project 1 21382746 21435124 + MGP_C3HHeJ_P0018872 B3gat2 protein_coding protein_coding MGP_C3HHeJ_T0018873.1 MGP_C3HHeJ_G0015656.1 mouse_genomes_project 1 21383370 21465434 + MGP_C3HHeJ_P0018873 B3gat2 protein_coding protein_coding MGP_C3HHeJ_T0018751.1 MGP_C3HHeJ_G0015625.1 mouse_genomes_project 1 13456966 13484767 + MGP_C3HHeJ_P0018751 Rdh10 protein_coding protein_coding MGP_C3HHeJ_T0018752.1 MGP_C3HHeJ_G0015625.1 mouse_genomes_project 1 13481678 13483723 + Rdh10 protein_coding retained_intron MGP_C3HHeJ_T0005764.1 MGP_C3HHeJ_G0004827.1 mouse_genomes_project 1 92690580 92702801 + Gm28380 lincRNA lincRNA MGP_C3HHeJ_T0005613.1 MGP_C3HHeJ_G0004717.1 mouse_genomes_project 1 36504629 36532370 + Gm5099 lincRNA lincRNA MGP_C3HHeJ_T0098644.1 MGP_C3HHeJ_G0036838.1 mouse_genomes_project 1 121554018 121554122 + Gm25322 snRNA snRNA MGP_C3HHeJ_T0000636.1 MGP_C3HHeJ_G0000581.1 mouse_genomes_project 1 144303056 144306166 - TEC TEC MGP_C3HHeJ_T0019311.1 MGP_C3HHeJ_G0015738.1 mouse_genomes_project 1 38902618 38921321 + MGP_C3HHeJ_P0019311 Il1rl1 protein_coding protein_coding MGP_C3HHeJ_T0019312.1 MGP_C3HHeJ_G0015738.1 mouse_genomes_project 1 38911177 38916013 + MGP_C3HHeJ_P0019312 Il1rl1 protein_coding protein_coding MGP_C3HHeJ_T0019313.1 MGP_C3HHeJ_G0015738.1 mouse_genomes_project 1 38914232 38936443 + MGP_C3HHeJ_P0019313 Il1rl1 protein_coding protein_coding MGP_C3HHeJ_T0019314.1 MGP_C3HHeJ_G0015738.1 mouse_genomes_project 1 38914381 38922743 + MGP_C3HHeJ_P0019314 Il1rl1 protein_coding protein_coding MGP_C3HHeJ_T0019315.1 MGP_C3HHeJ_G0015738.1 mouse_genomes_project 1 38915233 38936424 + MGP_C3HHeJ_P0019315 Il1rl1 protein_coding protein_coding MGP_C3HHeJ_T0002808.1 MGP_C3HHeJ_G0002654.1 mouse_genomes_project 1 123547695 123551603 - Gm15392 antisense antisense MGP_C3HHeJ_T0012070.1 MGP_C3HHeJ_G0010174.1 mouse_genomes_project 1 103986342 103986609 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012173.1 MGP_C3HHeJ_G0010277.1 mouse_genomes_project 1 151709049 151709839 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005817.1 MGP_C3HHeJ_G0004868.1 mouse_genomes_project 1 123404161 123409178 - 2210011K15Rik lincRNA lincRNA MGP_C3HHeJ_T0000341.1 MGP_C3HHeJ_G0000291.1 mouse_genomes_project 1 7197086 7198006 - TEC TEC MGP_C3HHeJ_T0000463.1 MGP_C3HHeJ_G0000410.1 mouse_genomes_project 1 61536353 61537718 + TEC TEC MGP_C3HHeJ_T0005931.1 MGP_C3HHeJ_G0004962.1 mouse_genomes_project 1 185797474 185805065 + Gm17275 lincRNA lincRNA MGP_C3HHeJ_T0000716.1 MGP_C3HHeJ_G0000661.1 mouse_genomes_project 1 180632568 180634212 - TEC TEC MGP_C3HHeJ_T0098625.1 MGP_C3HHeJ_G0036819.1 mouse_genomes_project 1 70117048 70117174 - Gm23879 snRNA snRNA MGP_C3HHeJ_T0000618.1 MGP_C3HHeJ_G0000564.1 mouse_genomes_project 1 140615052 140618926 + TEC TEC MGP_C3HHeJ_T0002888.1 MGP_C3HHeJ_G0002715.1 mouse_genomes_project 1 176199964 176209090 - Gm37065 antisense antisense MGP_C3HHeJ_T0002697.1 MGP_C3HHeJ_G0002570.1 mouse_genomes_project 1 15031169 15060101 - Gm28154 antisense antisense MGP_C3HHeJ_T0012196.1 MGP_C3HHeJ_G0010300.1 mouse_genomes_project 1 159217228 159217534 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020254.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74690060 74702845 + MGP_C3HHeJ_P0020254 Slc11a1 protein_coding protein_coding MGP_C3HHeJ_T0020255.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74690068 74703142 + Slc11a1 protein_coding retained_intron MGP_C3HHeJ_T0020256.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74690068 74703154 + MGP_C3HHeJ_P0020256 Slc11a1 protein_coding protein_coding MGP_C3HHeJ_T0020257.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74690090 74703141 + Slc11a1 protein_coding retained_intron MGP_C3HHeJ_T0020258.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74690118 74698751 + Slc11a1 protein_coding processed_transcript MGP_C3HHeJ_T0020259.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74690437 74691756 + Slc11a1 protein_coding processed_transcript MGP_C3HHeJ_T0020260.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74691522 74694716 + Slc11a1 protein_coding processed_transcript MGP_C3HHeJ_T0020261.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74698575 74701096 + Slc11a1 protein_coding retained_intron MGP_C3HHeJ_T0020262.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74699956 74700757 + Slc11a1 protein_coding retained_intron MGP_C3HHeJ_T0020263.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74700263 74701096 + Slc11a1 protein_coding processed_transcript MGP_C3HHeJ_T0020264.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74700522 74702287 + Slc11a1 protein_coding processed_transcript MGP_C3HHeJ_T0000766.1 MGP_C3HHeJ_G0000709.1 mouse_genomes_project 1 197520013 197520146 + TEC TEC MGP_C3HHeJ_T0021183.1 MGP_C3HHeJ_G0016102.1 mouse_genomes_project 1 94337340 94399874 + MGP_C3HHeJ_P0021183 Crocc2 protein_coding protein_coding MGP_C3HHeJ_T0021184.1 MGP_C3HHeJ_G0016102.1 mouse_genomes_project 1 94348626 94397658 + MGP_C3HHeJ_P0021184 Crocc2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0018721.1 MGP_C3HHeJ_G0015616.1 mouse_genomes_project 1 10911121 10949636 + MGP_C3HHeJ_P0018721 Xkr9 protein_coding protein_coding MGP_C3HHeJ_T0012073.1 MGP_C3HHeJ_G0010177.1 mouse_genomes_project 1 106113158 106114226 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005789.1 MGP_C3HHeJ_G0004848.1 mouse_genomes_project 1 109142171 109144383 - Gm15391 lincRNA lincRNA MGP_C3HHeJ_T0023371.1 MGP_C3HHeJ_G0016557.1 mouse_genomes_project 1 176901418 176910189 - MGP_C3HHeJ_P0023371 Slamf8 protein_coding protein_coding MGP_C3HHeJ_T0023372.1 MGP_C3HHeJ_G0016557.1 mouse_genomes_project 1 176908599 176910070 - Slamf8 protein_coding retained_intron MGP_C3HHeJ_T0011828.1 MGP_C3HHeJ_G0009932.1 mouse_genomes_project 1 19806256 19806703 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018868.1 MGP_C3HHeJ_G0015655.1 mouse_genomes_project 1 20946115 20964462 - MGP_C3HHeJ_P0018868 Ogfrl1 protein_coding protein_coding MGP_C3HHeJ_T0018869.1 MGP_C3HHeJ_G0015655.1 mouse_genomes_project 1 20949397 20962058 - Ogfrl1 protein_coding retained_intron MGP_C3HHeJ_T0018870.1 MGP_C3HHeJ_G0015655.1 mouse_genomes_project 1 20951535 20979809 - MGP_C3HHeJ_P0018870 Ogfrl1 protein_coding protein_coding MGP_C3HHeJ_T0018871.1 MGP_C3HHeJ_G0015655.1 mouse_genomes_project 1 20972920 20980040 - Ogfrl1 protein_coding processed_transcript MGP_C3HHeJ_T0002799.1 MGP_C3HHeJ_G0002649.1 mouse_genomes_project 1 106533616 106534515 - Gm15699 antisense antisense MGP_C3HHeJ_T0021716.1 MGP_C3HHeJ_G0016221.1 mouse_genomes_project 1 133651628 133662413 - Ikbke protein_coding retained_intron MGP_C3HHeJ_T0021717.1 MGP_C3HHeJ_G0016221.1 mouse_genomes_project 1 133651882 133678545 - MGP_C3HHeJ_P0021717 Ikbke protein_coding protein_coding MGP_C3HHeJ_T0021718.1 MGP_C3HHeJ_G0016221.1 mouse_genomes_project 1 133651887 133675404 - MGP_C3HHeJ_P0021718 Ikbke protein_coding protein_coding MGP_C3HHeJ_T0021719.1 MGP_C3HHeJ_G0016221.1 mouse_genomes_project 1 133656305 133663570 - Ikbke protein_coding retained_intron MGP_C3HHeJ_T0021720.1 MGP_C3HHeJ_G0016221.1 mouse_genomes_project 1 133660624 133667826 - Ikbke protein_coding retained_intron MGP_C3HHeJ_T0021721.1 MGP_C3HHeJ_G0016221.1 mouse_genomes_project 1 133668182 133669823 - Ikbke protein_coding retained_intron MGP_C3HHeJ_T0021722.1 MGP_C3HHeJ_G0016221.1 mouse_genomes_project 1 133671072 133675166 - MGP_C3HHeJ_P0021722 Ikbke protein_coding protein_coding MGP_C3HHeJ_T0011896.1 MGP_C3HHeJ_G0010000.1 mouse_genomes_project 1 42556361 42557177 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012091.1 MGP_C3HHeJ_G0010195.1 mouse_genomes_project 1 113250722 113251503 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005784.1 MGP_C3HHeJ_G0004844.1 mouse_genomes_project 1 106732676 106744848 + Gm29012 lincRNA lincRNA MGP_C3HHeJ_T0012166.1 MGP_C3HHeJ_G0010270.1 mouse_genomes_project 1 147886175 147887319 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099836.1 MGP_C3HHeJ_G0038030.1 mouse_genomes_project 1 33390836 33390965 - Gm25096 snoRNA snoRNA MGP_C3HHeJ_T0023150.1 MGP_C3HHeJ_G0016511.1 mouse_genomes_project 1 175137086 175138411 + MGP_C3HHeJ_P0023150 Apoa2 protein_coding protein_coding MGP_C3HHeJ_T0023151.1 MGP_C3HHeJ_G0016511.1 mouse_genomes_project 1 175137114 175138410 + MGP_C3HHeJ_P0023151 Apoa2 protein_coding protein_coding MGP_C3HHeJ_T0023152.1 MGP_C3HHeJ_G0016511.1 mouse_genomes_project 1 175137116 175138405 + MGP_C3HHeJ_P0023152 Apoa2 protein_coding protein_coding MGP_C3HHeJ_T0023153.1 MGP_C3HHeJ_G0016511.1 mouse_genomes_project 1 175137123 175138369 + MGP_C3HHeJ_P0023153 Apoa2 protein_coding protein_coding MGP_C3HHeJ_T0023704.1 MGP_C3HHeJ_G0016650.1 mouse_genomes_project 1 186891615 186924684 - MGP_C3HHeJ_P0023704 Lbr protein_coding protein_coding MGP_C3HHeJ_T0023705.1 MGP_C3HHeJ_G0016650.1 mouse_genomes_project 1 186891636 186896799 - Lbr protein_coding retained_intron MGP_C3HHeJ_T0023706.1 MGP_C3HHeJ_G0016650.1 mouse_genomes_project 1 186896151 186905789 - MGP_C3HHeJ_P0023706 Lbr protein_coding protein_coding MGP_C3HHeJ_T0023707.1 MGP_C3HHeJ_G0016650.1 mouse_genomes_project 1 186897830 186906057 - Lbr protein_coding retained_intron MGP_C3HHeJ_T0023708.1 MGP_C3HHeJ_G0016650.1 mouse_genomes_project 1 186917401 186925351 - MGP_C3HHeJ_P0023708 Lbr protein_coding protein_coding MGP_C3HHeJ_T0023709.1 MGP_C3HHeJ_G0016650.1 mouse_genomes_project 1 186917430 186924666 - MGP_C3HHeJ_P0023709 Lbr protein_coding protein_coding MGP_C3HHeJ_T0023710.1 MGP_C3HHeJ_G0016650.1 mouse_genomes_project 1 186917581 186925164 - MGP_C3HHeJ_P0023710 Lbr protein_coding protein_coding MGP_C3HHeJ_T0023711.1 MGP_C3HHeJ_G0016650.1 mouse_genomes_project 1 186920774 186924631 - MGP_C3HHeJ_P0023711 Lbr protein_coding protein_coding MGP_C3HHeJ_T0099853.1 MGP_C3HHeJ_G0038047.1 mouse_genomes_project 1 62878281 62878395 + Gm24942 snoRNA snoRNA MGP_C3HHeJ_T0005688.1 MGP_C3HHeJ_G0004767.1 mouse_genomes_project 1 64099964 64216343 - Gm28981 lincRNA lincRNA MGP_C3HHeJ_T0018538.1 MGP_C3HHeJ_G0015589.1 mouse_genomes_project 1 2990552 2994244 - MGP_C3HHeJ_P0018538 Npbwr1 protein_coding protein_coding MGP_C3HHeJ_T0005609.1 MGP_C3HHeJ_G0004713.1 mouse_genomes_project 1 34261498 34262320 + 4930535G08Rik lincRNA lincRNA MGP_C3HHeJ_T0000721.1 MGP_C3HHeJ_G0000666.1 mouse_genomes_project 1 181607271 181609717 + TEC TEC MGP_C3HHeJ_T0024001.1 MGP_C3HHeJ_G0016709.1 mouse_genomes_project 1 197246173 197257649 + MGP_C3HHeJ_P0024001 Nek2 protein_coding protein_coding MGP_C3HHeJ_T0024002.1 MGP_C3HHeJ_G0016709.1 mouse_genomes_project 1 197246239 197253069 + Nek2 protein_coding retained_intron MGP_C3HHeJ_T0024003.1 MGP_C3HHeJ_G0016709.1 mouse_genomes_project 1 197246911 197250600 + Nek2 protein_coding retained_intron MGP_C3HHeJ_T0024004.1 MGP_C3HHeJ_G0016709.1 mouse_genomes_project 1 197251922 197254765 + Nek2 protein_coding processed_transcript MGP_C3HHeJ_T0019830.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59273341 59394729 + MGP_C3HHeJ_P0019830 Gm973 protein_coding protein_coding MGP_C3HHeJ_T0019831.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59282145 59284823 + MGP_C3HHeJ_P0019831 Gm973 protein_coding protein_coding MGP_C3HHeJ_T0019832.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59282509 59355857 + MGP_C3HHeJ_P0019832 Gm973 protein_coding unknown_likely_coding MGP_C3HHeJ_T0019833.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59302314 59316521 + Gm973 protein_coding retained_intron MGP_C3HHeJ_T0019834.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59306807 59321941 + Gm973 protein_coding processed_transcript MGP_C3HHeJ_T0019835.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59318234 59325772 + Gm973 protein_coding retained_intron MGP_C3HHeJ_T0019837.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59365566 59387050 + Gm973 protein_coding processed_transcript MGP_C3HHeJ_T0019838.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59365600 59389092 + Gm973 protein_coding processed_transcript MGP_C3HHeJ_T0019839.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59378202 59387032 + Gm973 protein_coding processed_transcript MGP_C3HHeJ_T0019840.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59389111 59396637 + MGP_C3HHeJ_P0019840 Gm973 protein_coding protein_coding MGP_C3HHeJ_T0012185.1 MGP_C3HHeJ_G0010289.1 mouse_genomes_project 1 154700308 154700549 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000657.1 MGP_C3HHeJ_G0000602.1 mouse_genomes_project 1 157179446 157182003 - TEC TEC MGP_C3HHeJ_T0012269.1 MGP_C3HHeJ_G0010373.1 mouse_genomes_project 1 197213481 197213813 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002908.1 MGP_C3HHeJ_G0002732.1 mouse_genomes_project 1 190399975 190406039 - Gm34882 antisense antisense MGP_C3HHeJ_T0021531.1 MGP_C3HHeJ_G0016179.1 mouse_genomes_project 1 123485079 123565848 + MGP_C3HHeJ_P0021531 Ccdc93 protein_coding protein_coding MGP_C3HHeJ_T0021532.1 MGP_C3HHeJ_G0016179.1 mouse_genomes_project 1 123485105 123505720 + Ccdc93 protein_coding retained_intron MGP_C3HHeJ_T0021533.1 MGP_C3HHeJ_G0016179.1 mouse_genomes_project 1 123485125 123506413 + Ccdc93 protein_coding processed_transcript MGP_C3HHeJ_T0021534.1 MGP_C3HHeJ_G0016179.1 mouse_genomes_project 1 123485138 123500683 + Ccdc93 protein_coding processed_transcript MGP_C3HHeJ_T0021535.1 MGP_C3HHeJ_G0016179.1 mouse_genomes_project 1 123485140 123560010 + MGP_C3HHeJ_P0021535 Ccdc93 protein_coding protein_coding MGP_C3HHeJ_T0021536.1 MGP_C3HHeJ_G0016179.1 mouse_genomes_project 1 123549616 123557902 + Ccdc93 protein_coding retained_intron MGP_C3HHeJ_T0000593.1 MGP_C3HHeJ_G0000540.1 mouse_genomes_project 1 132845621 132847876 + TEC TEC MGP_C3HHeJ_T0098678.1 MGP_C3HHeJ_G0036872.1 mouse_genomes_project 1 183530078 183530245 + Gm24405 snRNA snRNA MGP_C3HHeJ_T0023126.1 MGP_C3HHeJ_G0016506.1 mouse_genomes_project 1 175036317 175061339 - MGP_C3HHeJ_P0023126 Sdhc protein_coding protein_coding MGP_C3HHeJ_T0023127.1 MGP_C3HHeJ_G0016506.1 mouse_genomes_project 1 175038551 175061327 - MGP_C3HHeJ_P0023127 Sdhc protein_coding protein_coding MGP_C3HHeJ_T0023128.1 MGP_C3HHeJ_G0016506.1 mouse_genomes_project 1 175048655 175061324 - MGP_C3HHeJ_P0023128 Sdhc protein_coding protein_coding MGP_C3HHeJ_T0021325.1 MGP_C3HHeJ_G0016131.1 mouse_genomes_project 1 106382010 106611900 + MGP_C3HHeJ_P0021325 Cdh20 protein_coding protein_coding MGP_C3HHeJ_T0018858.1 MGP_C3HHeJ_G0015653.1 mouse_genomes_project 1 19859740 20372596 - MGP_C3HHeJ_P0018858 protein_coding protein_coding MGP_C3HHeJ_T0018859.1 MGP_C3HHeJ_G0015653.1 mouse_genomes_project 1 19859740 20372596 - MGP_C3HHeJ_P0018859 protein_coding protein_coding MGP_C3HHeJ_T0018860.1 MGP_C3HHeJ_G0015653.1 mouse_genomes_project 1 19859740 20372596 - MGP_C3HHeJ_P0018860 protein_coding protein_coding MGP_C3HHeJ_T0018861.1 MGP_C3HHeJ_G0015653.1 mouse_genomes_project 1 19859740 20372596 - MGP_C3HHeJ_P0018861 protein_coding protein_coding MGP_C3HHeJ_T0018862.1 MGP_C3HHeJ_G0015653.1 mouse_genomes_project 1 19859740 20372596 - MGP_C3HHeJ_P0018862 protein_coding protein_coding MGP_C3HHeJ_T0018863.1 MGP_C3HHeJ_G0015653.1 mouse_genomes_project 1 19860404 19890843 - MGP_C3HHeJ_P0018863 protein_coding protein_coding MGP_C3HHeJ_T0018864.1 MGP_C3HHeJ_G0015653.1 mouse_genomes_project 1 19861914 20372596 - MGP_C3HHeJ_P0018864 protein_coding unknown_likely_coding MGP_C3HHeJ_T0018865.1 MGP_C3HHeJ_G0015653.1 mouse_genomes_project 1 19861914 20014490 - MGP_C3HHeJ_P0018865 protein_coding protein_coding MGP_C3HHeJ_T0018866.1 MGP_C3HHeJ_G0015653.1 mouse_genomes_project 1 20019600 20372596 - MGP_C3HHeJ_P0018866 protein_coding protein_coding MGP_C3HHeJ_T0011145.1 MGP_C3HHeJ_G0009278.1 mouse_genomes_project 1 13226471 13226774 + Gm23259 misc_RNA misc_RNA MGP_C3HHeJ_T0000332.1 MGP_C3HHeJ_G0000282.1 mouse_genomes_project 1 2479259 2481292 + TEC TEC MGP_C3HHeJ_T0023633.1 MGP_C3HHeJ_G0016632.1 mouse_genomes_project 1 185547542 185558006 + MGP_C3HHeJ_P0023633 Parp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023634.1 MGP_C3HHeJ_G0016632.1 mouse_genomes_project 1 185547547 185580167 + MGP_C3HHeJ_P0023634 Parp1 protein_coding protein_coding MGP_C3HHeJ_T0023635.1 MGP_C3HHeJ_G0016632.1 mouse_genomes_project 1 185547844 185556469 + MGP_C3HHeJ_P0023635 Parp1 protein_coding protein_coding MGP_C3HHeJ_T0023636.1 MGP_C3HHeJ_G0016632.1 mouse_genomes_project 1 185568307 185570491 + Parp1 protein_coding retained_intron MGP_C3HHeJ_T0023637.1 MGP_C3HHeJ_G0016632.1 mouse_genomes_project 1 185577137 185579109 + Parp1 protein_coding retained_intron MGP_C3HHeJ_T0023638.1 MGP_C3HHeJ_G0016632.1 mouse_genomes_project 1 185577748 185579019 + Parp1 protein_coding retained_intron MGP_C3HHeJ_T0023639.1 MGP_C3HHeJ_G0016632.1 mouse_genomes_project 1 185577900 185580165 + MGP_C3HHeJ_P0023639 Parp1 protein_coding protein_coding MGP_C3HHeJ_T0002785.1 MGP_C3HHeJ_G0002637.1 mouse_genomes_project 1 89320583 89326025 - 4930453O03Rik antisense antisense MGP_C3HHeJ_T0005829.1 MGP_C3HHeJ_G0004879.1 mouse_genomes_project 1 134712966 134718634 - Gm29630 lincRNA lincRNA MGP_C3HHeJ_T0012209.1 MGP_C3HHeJ_G0010313.1 mouse_genomes_project 1 165402772 165403976 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005581.1 MGP_C3HHeJ_G0004688.1 mouse_genomes_project 1 14574410 14579111 + Gm28784 lincRNA lincRNA MGP_C3HHeJ_T0009445.1 MGP_C3HHeJ_G0007578.1 mouse_genomes_project 1 136221393 136221481 - Mir6903 miRNA miRNA MGP_C3HHeJ_T0002820.1 MGP_C3HHeJ_G0002663.1 mouse_genomes_project 1 134820562 134821945 + Gm15849 antisense antisense MGP_C3HHeJ_T0011762.1 MGP_C3HHeJ_G0009866.1 mouse_genomes_project 1 3132096 3133179 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012264.1 MGP_C3HHeJ_G0010368.1 mouse_genomes_project 1 195137300 195137562 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002882.1 MGP_C3HHeJ_G0002711.1 mouse_genomes_project 1 174047725 174048424 + 4930500M09Rik antisense antisense MGP_C3HHeJ_T0002883.1 MGP_C3HHeJ_G0002711.1 mouse_genomes_project 1 174047725 174049291 + 4930500M09Rik antisense antisense MGP_C3HHeJ_T0000445.1 MGP_C3HHeJ_G0000392.1 mouse_genomes_project 1 54947071 54951825 + TEC TEC MGP_C3HHeJ_T0019221.1 MGP_C3HHeJ_G0015719.1 mouse_genomes_project 1 36364917 36429529 + MGP_C3HHeJ_P0019221 Eif5b protein_coding protein_coding MGP_C3HHeJ_T0019222.1 MGP_C3HHeJ_G0015719.1 mouse_genomes_project 1 36365036 36425971 + Eif5b protein_coding retained_intron MGP_C3HHeJ_T0019223.1 MGP_C3HHeJ_G0015719.1 mouse_genomes_project 1 36414863 36419356 + Eif5b protein_coding retained_intron MGP_C3HHeJ_T0019224.1 MGP_C3HHeJ_G0015719.1 mouse_genomes_project 1 36416757 36420592 + Eif5b protein_coding processed_transcript MGP_C3HHeJ_T0019225.1 MGP_C3HHeJ_G0015719.1 mouse_genomes_project 1 36418549 36422719 + Eif5b protein_coding retained_intron MGP_C3HHeJ_T0020934.1 MGP_C3HHeJ_G0016039.1 mouse_genomes_project 1 88927990 89117572 + MGP_C3HHeJ_P0020934 protein_coding protein_coding MGP_C3HHeJ_T0020935.1 MGP_C3HHeJ_G0016039.1 mouse_genomes_project 1 88928013 89122344 + MGP_C3HHeJ_P0020935 protein_coding protein_coding MGP_C3HHeJ_T0020936.1 MGP_C3HHeJ_G0016039.1 mouse_genomes_project 1 88928074 89117504 + MGP_C3HHeJ_P0020936 protein_coding protein_coding MGP_C3HHeJ_T0022829.1 MGP_C3HHeJ_G0016432.1 mouse_genomes_project 1 166467175 166493012 - MGP_C3HHeJ_P0022829 Fmo2 protein_coding protein_coding MGP_C3HHeJ_T0022830.1 MGP_C3HHeJ_G0016432.1 mouse_genomes_project 1 166467180 166479285 - Fmo2 protein_coding retained_intron MGP_C3HHeJ_T0022831.1 MGP_C3HHeJ_G0016432.1 mouse_genomes_project 1 166469294 166492965 - MGP_C3HHeJ_P0022831 Fmo2 protein_coding protein_coding MGP_C3HHeJ_T0022832.1 MGP_C3HHeJ_G0016432.1 mouse_genomes_project 1 166470897 166473556 - Fmo2 protein_coding processed_transcript MGP_C3HHeJ_T0022833.1 MGP_C3HHeJ_G0016432.1 mouse_genomes_project 1 166480337 166492784 - MGP_C3HHeJ_P0022833 Fmo2 protein_coding protein_coding MGP_C3HHeJ_T0022834.1 MGP_C3HHeJ_G0016432.1 mouse_genomes_project 1 166480847 166493026 - Fmo2 protein_coding retained_intron MGP_C3HHeJ_T0022835.1 MGP_C3HHeJ_G0016432.1 mouse_genomes_project 1 166491980 166493020 - Fmo2 protein_coding retained_intron MGP_C3HHeJ_T0019209.1 MGP_C3HHeJ_G0015716.1 mouse_genomes_project 1 36265387 36276490 - MGP_C3HHeJ_P0019209 Lyg2 protein_coding protein_coding MGP_C3HHeJ_T0012011.1 MGP_C3HHeJ_G0010115.1 mouse_genomes_project 1 75927364 75928945 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016817.1 MGP_C3HHeJ_G0014874.1 mouse_genomes_project 1 140598439 140599581 + Gm4258 processed_transcript retained_intron MGP_C3HHeJ_T0016818.1 MGP_C3HHeJ_G0014874.1 mouse_genomes_project 1 140598442 140707902 + Gm4258 processed_transcript lincRNA MGP_C3HHeJ_T0099825.1 MGP_C3HHeJ_G0038019.1 mouse_genomes_project 1 13029458 13029570 - Gm25227 snoRNA snoRNA MGP_C3HHeJ_T0000418.1 MGP_C3HHeJ_G0000365.1 mouse_genomes_project 1 35671727 35672261 - TEC TEC MGP_C3HHeJ_T0020132.1 MGP_C3HHeJ_G0015891.1 mouse_genomes_project 1 69990562 70430741 + Spag16 protein_coding processed_transcript MGP_C3HHeJ_T0020133.1 MGP_C3HHeJ_G0015891.1 mouse_genomes_project 1 69990563 70430642 + Spag16 protein_coding processed_transcript MGP_C3HHeJ_T0020134.1 MGP_C3HHeJ_G0015891.1 mouse_genomes_project 1 69990580 70918988 + MGP_C3HHeJ_P0020134 Spag16 protein_coding protein_coding MGP_C3HHeJ_T0020135.1 MGP_C3HHeJ_G0015891.1 mouse_genomes_project 1 69990584 70093854 + MGP_C3HHeJ_P0020135 Spag16 protein_coding protein_coding MGP_C3HHeJ_T0020136.1 MGP_C3HHeJ_G0015891.1 mouse_genomes_project 1 69999849 70041853 + Spag16 protein_coding processed_transcript MGP_C3HHeJ_T0020137.1 MGP_C3HHeJ_G0015891.1 mouse_genomes_project 1 70113985 70918988 + Spag16 protein_coding processed_transcript MGP_C3HHeJ_T0020138.1 MGP_C3HHeJ_G0015891.1 mouse_genomes_project 1 70114012 70446925 + Spag16 protein_coding processed_transcript MGP_C3HHeJ_T0098655.1 MGP_C3HHeJ_G0036849.1 mouse_genomes_project 1 139656140 139656200 - Gm23763 snRNA snRNA MGP_C3HHeJ_T0002829.1 MGP_C3HHeJ_G0002668.1 mouse_genomes_project 1 137382388 137394679 + Gm28892 antisense antisense MGP_C3HHeJ_T0098681.1 MGP_C3HHeJ_G0036875.1 mouse_genomes_project 1 189706748 189706846 - Gm23349 snRNA snRNA MGP_C3HHeJ_T0019628.1 MGP_C3HHeJ_G0015799.1 mouse_genomes_project 1 54539367 54559274 + MGP_C3HHeJ_P0019628 Coq10b protein_coding protein_coding MGP_C3HHeJ_T0019629.1 MGP_C3HHeJ_G0015799.1 mouse_genomes_project 1 54539367 54558525 + MGP_C3HHeJ_P0019629 Coq10b protein_coding protein_coding MGP_C3HHeJ_T0019630.1 MGP_C3HHeJ_G0015799.1 mouse_genomes_project 1 54539466 54540691 + Coq10b protein_coding retained_intron MGP_C3HHeJ_T0019631.1 MGP_C3HHeJ_G0015799.1 mouse_genomes_project 1 54546210 54548329 + Coq10b protein_coding retained_intron MGP_C3HHeJ_T0021262.1 MGP_C3HHeJ_G0016115.1 mouse_genomes_project 1 94993077 95002892 - MGP_C3HHeJ_P0021262 Dtymk protein_coding protein_coding MGP_C3HHeJ_T0021263.1 MGP_C3HHeJ_G0016115.1 mouse_genomes_project 1 94993225 95000009 - MGP_C3HHeJ_P0021263 Dtymk protein_coding protein_coding MGP_C3HHeJ_T0021264.1 MGP_C3HHeJ_G0016115.1 mouse_genomes_project 1 94999387 95000369 - Dtymk protein_coding processed_transcript MGP_C3HHeJ_T0021265.1 MGP_C3HHeJ_G0016115.1 mouse_genomes_project 1 95001053 95002864 - MGP_C3HHeJ_P0021265 Dtymk protein_coding protein_coding MGP_C3HHeJ_T0019075.1 MGP_C3HHeJ_G0015693.1 mouse_genomes_project 1 34639246 34688679 + MGP_C3HHeJ_P0019075 Fer1l5 protein_coding protein_coding MGP_C3HHeJ_T0019076.1 MGP_C3HHeJ_G0015693.1 mouse_genomes_project 1 34652435 34671430 + MGP_C3HHeJ_P0019076 Fer1l5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019077.1 MGP_C3HHeJ_G0015693.1 mouse_genomes_project 1 34683459 34688682 + MGP_C3HHeJ_P0019077 Fer1l5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000722.1 MGP_C3HHeJ_G0000667.1 mouse_genomes_project 1 181670382 181672279 - TEC TEC MGP_C3HHeJ_T0021826.1 MGP_C3HHeJ_G0016244.1 mouse_genomes_project 1 134957308 134971043 - MGP_C3HHeJ_P0021826 Cntn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021827.1 MGP_C3HHeJ_G0016244.1 mouse_genomes_project 1 134957308 134963516 - MGP_C3HHeJ_P0021827 Cntn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021828.1 MGP_C3HHeJ_G0016244.1 mouse_genomes_project 1 134959653 134991475 - Cntn2 protein_coding retained_intron MGP_C3HHeJ_T0021829.1 MGP_C3HHeJ_G0016244.1 mouse_genomes_project 1 134959657 134991524 - MGP_C3HHeJ_P0021829 Cntn2 protein_coding protein_coding MGP_C3HHeJ_T0021830.1 MGP_C3HHeJ_G0016244.1 mouse_genomes_project 1 134959667 134991450 - Cntn2 protein_coding retained_intron MGP_C3HHeJ_T0021831.1 MGP_C3HHeJ_G0016244.1 mouse_genomes_project 1 134964879 134966867 - Cntn2 protein_coding retained_intron MGP_C3HHeJ_T0021832.1 MGP_C3HHeJ_G0016244.1 mouse_genomes_project 1 134976648 134981534 - MGP_C3HHeJ_P0021832 Cntn2 protein_coding protein_coding MGP_C3HHeJ_T0021833.1 MGP_C3HHeJ_G0016244.1 mouse_genomes_project 1 134981306 134991841 - MGP_C3HHeJ_P0021833 Cntn2 protein_coding protein_coding MGP_C3HHeJ_T0002795.1 MGP_C3HHeJ_G0002647.1 mouse_genomes_project 1 94926847 94948538 + Gm10550 antisense antisense MGP_C3HHeJ_T0022802.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166270320 166341289 - MGP_C3HHeJ_P0022802 Prrc2c protein_coding protein_coding MGP_C3HHeJ_T0022803.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166270322 166341320 - MGP_C3HHeJ_P0022803 Prrc2c protein_coding protein_coding MGP_C3HHeJ_T0022804.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166271380 166304990 - MGP_C3HHeJ_P0022804 Prrc2c protein_coding protein_coding MGP_C3HHeJ_T0022805.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166271383 166305416 - MGP_C3HHeJ_P0022805 Prrc2c protein_coding protein_coding MGP_C3HHeJ_T0022806.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166272178 166341245 - MGP_C3HHeJ_P0022806 Prrc2c protein_coding protein_coding MGP_C3HHeJ_T0022807.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166272690 166341314 - MGP_C3HHeJ_P0022807 Prrc2c protein_coding protein_coding MGP_C3HHeJ_T0022808.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166283013 166288415 - Prrc2c protein_coding retained_intron MGP_C3HHeJ_T0022809.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166310590 166341168 - MGP_C3HHeJ_P0022809 Prrc2c protein_coding protein_coding MGP_C3HHeJ_T0022810.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166313025 166314240 - Prrc2c protein_coding retained_intron MGP_C3HHeJ_T0022811.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166320655 166341261 - Prrc2c protein_coding retained_intron MGP_C3HHeJ_T0022812.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166321308 166341114 - MGP_C3HHeJ_P0022812 Prrc2c protein_coding protein_coding MGP_C3HHeJ_T0022813.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166323668 166325632 - Prrc2c protein_coding retained_intron MGP_C3HHeJ_T0022814.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166329381 166331486 - Prrc2c protein_coding retained_intron MGP_C3HHeJ_T0022815.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166331021 166341251 - Prrc2c protein_coding processed_transcript MGP_C3HHeJ_T0009434.1 MGP_C3HHeJ_G0007567.1 mouse_genomes_project 1 97561752 97561841 - Gm24586 miRNA miRNA MGP_C3HHeJ_T0099832.1 MGP_C3HHeJ_G0038026.1 mouse_genomes_project 1 20831559 20831680 + Gm24176 snoRNA snoRNA MGP_C3HHeJ_T0012078.1 MGP_C3HHeJ_G0010182.1 mouse_genomes_project 1 107620136 107620691 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011993.1 MGP_C3HHeJ_G0010097.1 mouse_genomes_project 1 66017494 66017832 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101598.1 MGP_C3HHeJ_G0039564.1 mouse_genomes_project 1 178630232 178630776 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0022608.1 MGP_C3HHeJ_G0016396.1 mouse_genomes_project 1 160452683 160462161 - MGP_C3HHeJ_P0022608 Tex35 protein_coding protein_coding MGP_C3HHeJ_T0022609.1 MGP_C3HHeJ_G0016396.1 mouse_genomes_project 1 160452683 160462161 - MGP_C3HHeJ_P0022609 Tex35 protein_coding protein_coding MGP_C3HHeJ_T0022610.1 MGP_C3HHeJ_G0016396.1 mouse_genomes_project 1 160452691 160462160 - MGP_C3HHeJ_P0022610 Tex35 protein_coding protein_coding MGP_C3HHeJ_T0022611.1 MGP_C3HHeJ_G0016396.1 mouse_genomes_project 1 160452698 160462191 - MGP_C3HHeJ_P0022611 Tex35 protein_coding protein_coding MGP_C3HHeJ_T0022612.1 MGP_C3HHeJ_G0016396.1 mouse_genomes_project 1 160452857 160461899 - MGP_C3HHeJ_P0022612 Tex35 protein_coding protein_coding MGP_C3HHeJ_T0022613.1 MGP_C3HHeJ_G0016396.1 mouse_genomes_project 1 160452859 160462156 - MGP_C3HHeJ_P0022613 Tex35 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005958.1 MGP_C3HHeJ_G0004979.1 mouse_genomes_project 1 189736584 189759519 - Gm37800 lincRNA lincRNA MGP_C3HHeJ_T0005959.1 MGP_C3HHeJ_G0004979.1 mouse_genomes_project 1 189737222 189748053 - Gm37800 lincRNA lincRNA MGP_C3HHeJ_T0000648.1 MGP_C3HHeJ_G0000593.1 mouse_genomes_project 1 153452819 153454962 + TEC TEC MGP_C3HHeJ_T0019928.1 MGP_C3HHeJ_G0015852.1 mouse_genomes_project 1 61472005 61919044 + Pard3b protein_coding processed_transcript MGP_C3HHeJ_T0019929.1 MGP_C3HHeJ_G0015852.1 mouse_genomes_project 1 61472005 62482346 + MGP_C3HHeJ_P0019929 Pard3b protein_coding protein_coding MGP_C3HHeJ_T0019930.1 MGP_C3HHeJ_G0015852.1 mouse_genomes_project 1 61472056 61607528 + Pard3b protein_coding retained_intron MGP_C3HHeJ_T0019931.1 MGP_C3HHeJ_G0015852.1 mouse_genomes_project 1 61472067 62011605 + Pard3b protein_coding retained_intron MGP_C3HHeJ_T0019932.1 MGP_C3HHeJ_G0015852.1 mouse_genomes_project 1 61472424 62478011 + MGP_C3HHeJ_P0019932 Pard3b protein_coding protein_coding MGP_C3HHeJ_T0019933.1 MGP_C3HHeJ_G0015852.1 mouse_genomes_project 1 61472424 62482346 + MGP_C3HHeJ_P0019933 Pard3b protein_coding protein_coding MGP_C3HHeJ_T0011826.1 MGP_C3HHeJ_G0009930.1 mouse_genomes_project 1 19059264 19060353 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000647.1 MGP_C3HHeJ_G0000592.1 mouse_genomes_project 1 152535837 152538143 - TEC TEC MGP_C3HHeJ_T0018593.1 MGP_C3HHeJ_G0015598.1 mouse_genomes_project 1 6780125 6812684 - MGP_C3HHeJ_P0018593 Mybl1 protein_coding protein_coding MGP_C3HHeJ_T0018594.1 MGP_C3HHeJ_G0015598.1 mouse_genomes_project 1 6782246 6812499 - MGP_C3HHeJ_P0018594 Mybl1 protein_coding protein_coding MGP_C3HHeJ_T0018595.1 MGP_C3HHeJ_G0015598.1 mouse_genomes_project 1 6788835 6791311 - Mybl1 protein_coding retained_intron MGP_C3HHeJ_T0018596.1 MGP_C3HHeJ_G0015598.1 mouse_genomes_project 1 6790972 6796147 - Mybl1 protein_coding retained_intron MGP_C3HHeJ_T0018597.1 MGP_C3HHeJ_G0015598.1 mouse_genomes_project 1 6794537 6812129 - MGP_C3HHeJ_P0018597 Mybl1 protein_coding protein_coding MGP_C3HHeJ_T0023667.1 MGP_C3HHeJ_G0016641.1 mouse_genomes_project 1 185954472 185965257 + MGP_C3HHeJ_P0023667 Tmem63a protein_coding protein_coding MGP_C3HHeJ_T0023668.1 MGP_C3HHeJ_G0016641.1 mouse_genomes_project 1 185954586 185967957 + MGP_C3HHeJ_P0023668 Tmem63a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023669.1 MGP_C3HHeJ_G0016641.1 mouse_genomes_project 1 185954587 185988198 + MGP_C3HHeJ_P0023669 Tmem63a protein_coding protein_coding MGP_C3HHeJ_T0023670.1 MGP_C3HHeJ_G0016641.1 mouse_genomes_project 1 185954702 185969060 + MGP_C3HHeJ_P0023670 Tmem63a protein_coding protein_coding MGP_C3HHeJ_T0023671.1 MGP_C3HHeJ_G0016641.1 mouse_genomes_project 1 185956163 185988189 + MGP_C3HHeJ_P0023671 Tmem63a protein_coding protein_coding MGP_C3HHeJ_T0023672.1 MGP_C3HHeJ_G0016641.1 mouse_genomes_project 1 185958034 185958843 + MGP_C3HHeJ_P0023672 Tmem63a protein_coding protein_coding MGP_C3HHeJ_T0023673.1 MGP_C3HHeJ_G0016641.1 mouse_genomes_project 1 185958090 185960967 + MGP_C3HHeJ_P0023673 Tmem63a protein_coding protein_coding MGP_C3HHeJ_T0023674.1 MGP_C3HHeJ_G0016641.1 mouse_genomes_project 1 185973193 185973968 + Tmem63a protein_coding retained_intron MGP_C3HHeJ_T0002693.1 MGP_C3HHeJ_G0002568.1 mouse_genomes_project 1 13609731 13615077 + Gm7568 antisense antisense MGP_C3HHeJ_T0002694.1 MGP_C3HHeJ_G0002568.1 mouse_genomes_project 1 13609731 13624071 + Gm7568 antisense antisense MGP_C3HHeJ_T0002695.1 MGP_C3HHeJ_G0002568.1 mouse_genomes_project 1 13609768 13615073 + Gm7568 antisense antisense MGP_C3HHeJ_T0002722.1 MGP_C3HHeJ_G0002590.1 mouse_genomes_project 1 36767365 36777285 + Gm16152 antisense antisense MGP_C3HHeJ_T0002723.1 MGP_C3HHeJ_G0002590.1 mouse_genomes_project 1 36771361 36772777 + Gm16152 antisense antisense MGP_C3HHeJ_T0023784.1 MGP_C3HHeJ_G0016664.1 mouse_genomes_project 1 188432676 188453992 - MGP_C3HHeJ_P0023784 protein_coding protein_coding MGP_C3HHeJ_T0023785.1 MGP_C3HHeJ_G0016664.1 mouse_genomes_project 1 188432778 188440610 - MGP_C3HHeJ_P0023785 protein_coding protein_coding MGP_C3HHeJ_T0023786.1 MGP_C3HHeJ_G0016664.1 mouse_genomes_project 1 188433291 188478114 - MGP_C3HHeJ_P0023786 protein_coding unknown_likely_coding MGP_C3HHeJ_T0023787.1 MGP_C3HHeJ_G0016664.1 mouse_genomes_project 1 188441596 188446440 - MGP_C3HHeJ_P0023787 protein_coding protein_coding MGP_C3HHeJ_T0023788.1 MGP_C3HHeJ_G0016664.1 mouse_genomes_project 1 188452427 188459804 - protein_coding retained_intron MGP_C3HHeJ_T0023789.1 MGP_C3HHeJ_G0016664.1 mouse_genomes_project 1 188452923 188459782 - MGP_C3HHeJ_P0023789 protein_coding protein_coding MGP_C3HHeJ_T0023790.1 MGP_C3HHeJ_G0016664.1 mouse_genomes_project 1 188467113 188478111 - MGP_C3HHeJ_P0023790 protein_coding protein_coding MGP_C3HHeJ_T0023393.1 MGP_C3HHeJ_G0016570.1 mouse_genomes_project 1 177668783 177703232 - MGP_C3HHeJ_P0023393 Cadm3 protein_coding protein_coding MGP_C3HHeJ_T0023394.1 MGP_C3HHeJ_G0016570.1 mouse_genomes_project 1 177671518 177703222 - MGP_C3HHeJ_P0023394 Cadm3 protein_coding protein_coding MGP_C3HHeJ_T0023395.1 MGP_C3HHeJ_G0016570.1 mouse_genomes_project 1 177672370 177677445 - Cadm3 protein_coding retained_intron MGP_C3HHeJ_T0023396.1 MGP_C3HHeJ_G0016570.1 mouse_genomes_project 1 177678023 177703185 - Cadm3 protein_coding retained_intron MGP_C3HHeJ_T0023397.1 MGP_C3HHeJ_G0016570.1 mouse_genomes_project 1 177680417 177703170 - Cadm3 protein_coding retained_intron MGP_C3HHeJ_T0009391.1 MGP_C3HHeJ_G0007524.1 mouse_genomes_project 1 34399239 34399301 - Mir6897 miRNA miRNA MGP_C3HHeJ_T0010250.1 MGP_C3HHeJ_G0008383.1 mouse_genomes_project 2 7689027 7689135 + Gm22677 miRNA miRNA MGP_C3HHeJ_T0052515.1 MGP_C3HHeJ_G0025121.1 mouse_genomes_project 2 18775748 18785799 + MGP_C3HHeJ_P0052515 Thnsl1 protein_coding protein_coding MGP_C3HHeJ_T0052516.1 MGP_C3HHeJ_G0025121.1 mouse_genomes_project 2 18775763 18785166 + MGP_C3HHeJ_P0052516 Thnsl1 protein_coding protein_coding MGP_C3HHeJ_T0052517.1 MGP_C3HHeJ_G0025121.1 mouse_genomes_project 2 18775783 18784069 + MGP_C3HHeJ_P0052517 Thnsl1 protein_coding protein_coding MGP_C3HHeJ_T0052518.1 MGP_C3HHeJ_G0025121.1 mouse_genomes_project 2 18775797 18782332 + MGP_C3HHeJ_P0052518 Thnsl1 protein_coding protein_coding MGP_C3HHeJ_T0052519.1 MGP_C3HHeJ_G0025121.1 mouse_genomes_project 2 18775811 18785098 + MGP_C3HHeJ_P0052519 Thnsl1 protein_coding protein_coding MGP_C3HHeJ_T0057416.1 MGP_C3HHeJ_G0026241.1 mouse_genomes_project 2 133347018 133347737 + MGP_C3HHeJ_P0057416 Gm11037 protein_coding protein_coding MGP_C3HHeJ_T0054173.1 MGP_C3HHeJ_G0025402.1 mouse_genomes_project 2 34798296 34799235 + MGP_C3HHeJ_P0054173 Olfr342 protein_coding protein_coding MGP_C3HHeJ_T0056836.1 MGP_C3HHeJ_G0026106.1 mouse_genomes_project 2 122925653 122947533 + MGP_C3HHeJ_P0056836 Map1a protein_coding protein_coding MGP_C3HHeJ_T0056837.1 MGP_C3HHeJ_G0026106.1 mouse_genomes_project 2 122925823 122927097 + Map1a protein_coding processed_transcript MGP_C3HHeJ_T0056838.1 MGP_C3HHeJ_G0026106.1 mouse_genomes_project 2 122932084 122946127 + MGP_C3HHeJ_P0056838 Map1a protein_coding protein_coding MGP_C3HHeJ_T0056839.1 MGP_C3HHeJ_G0026106.1 mouse_genomes_project 2 122932093 122944310 + Map1a protein_coding processed_transcript MGP_C3HHeJ_T0007325.1 MGP_C3HHeJ_G0006002.1 mouse_genomes_project 2 173033442 173034250 - Gm14260 lincRNA lincRNA MGP_C3HHeJ_T0056787.1 MGP_C3HHeJ_G0026099.1 mouse_genomes_project 2 122675919 122715240 - MGP_C3HHeJ_P0056787 Tgm5 protein_coding protein_coding MGP_C3HHeJ_T0056788.1 MGP_C3HHeJ_G0026099.1 mouse_genomes_project 2 122703302 122715221 - Tgm5 protein_coding retained_intron MGP_C3HHeJ_T0003880.1 MGP_C3HHeJ_G0003463.1 mouse_genomes_project 2 30991578 30993825 - Gm13523 antisense antisense MGP_C3HHeJ_T0059548.1 MGP_C3HHeJ_G0026743.1 mouse_genomes_project 2 186131850 186168372 + MGP_C3HHeJ_P0059548 Dnajc5 protein_coding protein_coding MGP_C3HHeJ_T0059549.1 MGP_C3HHeJ_G0026743.1 mouse_genomes_project 2 186131891 186165510 + MGP_C3HHeJ_P0059549 Dnajc5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059550.1 MGP_C3HHeJ_G0026743.1 mouse_genomes_project 2 186131916 186165508 + MGP_C3HHeJ_P0059550 Dnajc5 protein_coding protein_coding MGP_C3HHeJ_T0059551.1 MGP_C3HHeJ_G0026743.1 mouse_genomes_project 2 186132177 186162047 + MGP_C3HHeJ_P0059551 Dnajc5 protein_coding protein_coding MGP_C3HHeJ_T0059552.1 MGP_C3HHeJ_G0026743.1 mouse_genomes_project 2 186132312 186162865 + MGP_C3HHeJ_P0059552 Dnajc5 protein_coding protein_coding MGP_C3HHeJ_T0059553.1 MGP_C3HHeJ_G0026743.1 mouse_genomes_project 2 186162600 186163533 + Dnajc5 protein_coding processed_transcript MGP_C3HHeJ_T0007336.1 MGP_C3HHeJ_G0006011.1 mouse_genomes_project 2 174294016 174295621 - Gm17619 lincRNA lincRNA MGP_C3HHeJ_T0052465.1 MGP_C3HHeJ_G0025114.1 mouse_genomes_project 2 16877957 16891070 + Msrb2 protein_coding processed_transcript MGP_C3HHeJ_T0052466.1 MGP_C3HHeJ_G0025114.1 mouse_genomes_project 2 16878153 16904270 + MGP_C3HHeJ_P0052466 Msrb2 protein_coding protein_coding MGP_C3HHeJ_T0052467.1 MGP_C3HHeJ_G0025114.1 mouse_genomes_project 2 16878185 16902614 + Msrb2 protein_coding processed_transcript MGP_C3HHeJ_T0052468.1 MGP_C3HHeJ_G0025114.1 mouse_genomes_project 2 16878358 16903558 + Msrb2 protein_coding processed_transcript MGP_C3HHeJ_T0013567.1 MGP_C3HHeJ_G0011671.1 mouse_genomes_project 2 110418538 110419024 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011407.1 MGP_C3HHeJ_G0009540.1 mouse_genomes_project 2 71787768 71788076 + Zakit misc_RNA misc_RNA MGP_C3HHeJ_T0058810.1 MGP_C3HHeJ_G0026574.1 mouse_genomes_project 2 168291464 168292602 + Wfdc2 protein_coding processed_transcript MGP_C3HHeJ_T0058811.1 MGP_C3HHeJ_G0026574.1 mouse_genomes_project 2 168291630 168297562 + MGP_C3HHeJ_P0058811 Wfdc2 protein_coding protein_coding MGP_C3HHeJ_T0058812.1 MGP_C3HHeJ_G0026574.1 mouse_genomes_project 2 168291750 168297562 + MGP_C3HHeJ_P0058812 Wfdc2 protein_coding protein_coding MGP_C3HHeJ_T0058813.1 MGP_C3HHeJ_G0026574.1 mouse_genomes_project 2 168291765 168297562 + MGP_C3HHeJ_P0058813 Wfdc2 protein_coding protein_coding MGP_C3HHeJ_T0058814.1 MGP_C3HHeJ_G0026574.1 mouse_genomes_project 2 168292070 168293238 + MGP_C3HHeJ_P0058814 Wfdc2 protein_coding protein_coding MGP_C3HHeJ_T0055131.1 MGP_C3HHeJ_G0025599.1 mouse_genomes_project 2 76251106 76254056 + MGP_C3HHeJ_P0055131 Dfnb59 protein_coding protein_coding MGP_C3HHeJ_T0055132.1 MGP_C3HHeJ_G0025599.1 mouse_genomes_project 2 76251129 76258428 + MGP_C3HHeJ_P0055132 Dfnb59 protein_coding protein_coding MGP_C3HHeJ_T0055133.1 MGP_C3HHeJ_G0025599.1 mouse_genomes_project 2 76252903 76261119 + MGP_C3HHeJ_P0055133 Dfnb59 protein_coding protein_coding MGP_C3HHeJ_T0003861.1 MGP_C3HHeJ_G0003446.1 mouse_genomes_project 2 24898978 24916459 - Dbhos antisense antisense MGP_C3HHeJ_T0013613.1 MGP_C3HHeJ_G0011717.1 mouse_genomes_project 2 133541623 133541902 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058089.1 MGP_C3HHeJ_G0026417.1 mouse_genomes_project 2 157033456 157048257 - MGP_C3HHeJ_P0058089 Sun5 protein_coding protein_coding MGP_C3HHeJ_T0058090.1 MGP_C3HHeJ_G0026417.1 mouse_genomes_project 2 157038700 157048257 - Sun5 protein_coding processed_transcript MGP_C3HHeJ_T0058091.1 MGP_C3HHeJ_G0026417.1 mouse_genomes_project 2 157042571 157048257 - Sun5 protein_coding processed_transcript MGP_C3HHeJ_T0054222.1 MGP_C3HHeJ_G0025430.1 mouse_genomes_project 2 35774877 35942979 - MGP_C3HHeJ_P0054222 Strbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054228.1 MGP_C3HHeJ_G0025430.1 mouse_genomes_project 2 35862413 35943045 - MGP_C3HHeJ_P0054228 Strbp protein_coding protein_coding MGP_C3HHeJ_T0054229.1 MGP_C3HHeJ_G0025430.1 mouse_genomes_project 2 35862566 35887060 - Strbp protein_coding processed_transcript MGP_C3HHeJ_T0054230.1 MGP_C3HHeJ_G0025430.1 mouse_genomes_project 2 35872136 35879101 - MGP_C3HHeJ_P0054230 Strbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054231.1 MGP_C3HHeJ_G0025430.1 mouse_genomes_project 2 35875753 36001324 - MGP_C3HHeJ_P0054231 Strbp protein_coding protein_coding MGP_C3HHeJ_T0054232.1 MGP_C3HHeJ_G0025430.1 mouse_genomes_project 2 35929408 36001397 - Strbp protein_coding processed_transcript MGP_C3HHeJ_T0054233.1 MGP_C3HHeJ_G0025430.1 mouse_genomes_project 2 35929937 35954164 - MGP_C3HHeJ_P0054233 Strbp protein_coding protein_coding MGP_C3HHeJ_T0054234.1 MGP_C3HHeJ_G0025430.1 mouse_genomes_project 2 35935329 36001908 - MGP_C3HHeJ_P0054234 Strbp protein_coding protein_coding MGP_C3HHeJ_T0054235.1 MGP_C3HHeJ_G0025430.1 mouse_genomes_project 2 35942879 36001198 - Strbp protein_coding processed_transcript MGP_C3HHeJ_T0013472.1 MGP_C3HHeJ_G0011576.1 mouse_genomes_project 2 78507602 78507770 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013369.1 MGP_C3HHeJ_G0011473.1 mouse_genomes_project 2 38553298 38553761 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010266.1 MGP_C3HHeJ_G0008399.1 mouse_genomes_project 2 7698872 7698983 + miRNA miRNA MGP_C3HHeJ_T0056282.1 MGP_C3HHeJ_G0025961.1 mouse_genomes_project 2 110861110 110871982 + MGP_C3HHeJ_P0056282 Lin7c protein_coding protein_coding MGP_C3HHeJ_T0056283.1 MGP_C3HHeJ_G0025961.1 mouse_genomes_project 2 110861127 110867652 + Lin7c protein_coding retained_intron MGP_C3HHeJ_T0055357.1 MGP_C3HHeJ_G0025643.1 mouse_genomes_project 2 84580544 84583748 + MGP_C3HHeJ_P0055357 Timm10 protein_coding protein_coding MGP_C3HHeJ_T0055358.1 MGP_C3HHeJ_G0025643.1 mouse_genomes_project 2 84580931 84583648 + MGP_C3HHeJ_P0055358 Timm10 protein_coding protein_coding MGP_C3HHeJ_T0007057.1 MGP_C3HHeJ_G0005785.1 mouse_genomes_project 2 8581721 8638356 - 8030442B05Rik lincRNA lincRNA MGP_C3HHeJ_T0013592.1 MGP_C3HHeJ_G0011696.1 mouse_genomes_project 2 123039361 123039608 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057260.1 MGP_C3HHeJ_G0026206.1 mouse_genomes_project 2 131434769 131444936 - MGP_C3HHeJ_P0057260 Il1a protein_coding protein_coding MGP_C3HHeJ_T0059150.1 MGP_C3HHeJ_G0026648.1 mouse_genomes_project 2 172926929 172994236 - MGP_C3HHeJ_P0059150 Zfp64 protein_coding protein_coding MGP_C3HHeJ_T0059151.1 MGP_C3HHeJ_G0026648.1 mouse_genomes_project 2 172941981 172948923 - MGP_C3HHeJ_P0059151 Zfp64 protein_coding protein_coding MGP_C3HHeJ_T0059152.1 MGP_C3HHeJ_G0026648.1 mouse_genomes_project 2 172963302 172993921 - MGP_C3HHeJ_P0059152 Zfp64 protein_coding protein_coding MGP_C3HHeJ_T0059153.1 MGP_C3HHeJ_G0026648.1 mouse_genomes_project 2 172972772 172993938 - MGP_C3HHeJ_P0059153 Zfp64 protein_coding protein_coding MGP_C3HHeJ_T0059154.1 MGP_C3HHeJ_G0026648.1 mouse_genomes_project 2 172989171 172993915 - Zfp64 protein_coding retained_intron MGP_C3HHeJ_T0013444.1 MGP_C3HHeJ_G0011548.1 mouse_genomes_project 2 69084240 69084673 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054346.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43494809 43636053 - MGP_C3HHeJ_P0054346 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054347.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43498304 43630703 - MGP_C3HHeJ_P0054347 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054348.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43498306 43628226 - MGP_C3HHeJ_P0054348 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054349.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43498306 43630997 - MGP_C3HHeJ_P0054349 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054350.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43499517 43630720 - MGP_C3HHeJ_P0054350 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054351.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43499583 43627999 - MGP_C3HHeJ_P0054351 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054352.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43499624 43630608 - MGP_C3HHeJ_P0054352 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054353.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43507989 43628163 - MGP_C3HHeJ_P0054353 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054354.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43512878 43628884 - MGP_C3HHeJ_P0054354 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054355.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43512903 43536564 - MGP_C3HHeJ_P0054355 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054356.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43512969 43627955 - MGP_C3HHeJ_P0054356 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054357.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43513868 43567671 - Zeb2 protein_coding processed_transcript MGP_C3HHeJ_T0054358.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43513870 43628866 - MGP_C3HHeJ_P0054358 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054359.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43520305 43628786 - Zeb2 protein_coding processed_transcript MGP_C3HHeJ_T0054360.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43531076 43630986 - MGP_C3HHeJ_P0054360 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054361.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43534469 43630807 - Zeb2 protein_coding retained_intron MGP_C3HHeJ_T0054362.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43534548 43630963 - Zeb2 protein_coding retained_intron MGP_C3HHeJ_T0054363.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43536552 43628338 - MGP_C3HHeJ_P0054363 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054364.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43536637 43631002 - MGP_C3HHeJ_P0054364 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054365.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43536708 43628465 - MGP_C3HHeJ_P0054365 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054366.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43609395 43628444 - MGP_C3HHeJ_P0054366 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054367.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43621777 43630966 - Zeb2 protein_coding processed_transcript MGP_C3HHeJ_T0054368.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43621777 43628198 - Zeb2 protein_coding processed_transcript MGP_C3HHeJ_T0054369.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43621777 43630934 - Zeb2 protein_coding processed_transcript MGP_C3HHeJ_T0054370.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43623004 43627787 - Zeb2 protein_coding processed_transcript MGP_C3HHeJ_T0054371.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43623865 43628195 - Zeb2 protein_coding processed_transcript MGP_C3HHeJ_T0054372.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43624224 43630719 - Zeb2 protein_coding retained_intron MGP_C3HHeJ_T0054373.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43627799 43631222 - Zeb2 protein_coding processed_transcript MGP_C3HHeJ_T0101872.1 MGP_C3HHeJ_G0039837.1 mouse_genomes_project 2 20076716 20078911 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010292.1 MGP_C3HHeJ_G0008425.1 mouse_genomes_project 2 17418700 17418776 + Gm44457 miRNA miRNA MGP_C3HHeJ_T0056735.1 MGP_C3HHeJ_G0026091.1 mouse_genomes_project 2 122222253 122236657 + MGP_C3HHeJ_P0056735 Haus2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056736.1 MGP_C3HHeJ_G0026091.1 mouse_genomes_project 2 122222323 122235969 + MGP_C3HHeJ_P0056736 Haus2 protein_coding protein_coding MGP_C3HHeJ_T0055377.1 MGP_C3HHeJ_G0025649.1 mouse_genomes_project 2 84745301 84783723 - MGP_C3HHeJ_P0055377 P2rx3 protein_coding protein_coding MGP_C3HHeJ_T0055378.1 MGP_C3HHeJ_G0025649.1 mouse_genomes_project 2 84745502 84781583 - MGP_C3HHeJ_P0055378 P2rx3 protein_coding protein_coding MGP_C3HHeJ_T0055379.1 MGP_C3HHeJ_G0025649.1 mouse_genomes_project 2 84745672 84783356 - MGP_C3HHeJ_P0055379 P2rx3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055380.1 MGP_C3HHeJ_G0025649.1 mouse_genomes_project 2 84771373 84779571 - P2rx3 protein_coding processed_transcript MGP_C3HHeJ_T0055381.1 MGP_C3HHeJ_G0025649.1 mouse_genomes_project 2 84778313 84779455 - P2rx3 protein_coding processed_transcript MGP_C3HHeJ_T0017659.1 MGP_C3HHeJ_G0015238.1 mouse_genomes_project 2 148426397 148467965 + BC039771 processed_transcript processed_transcript MGP_C3HHeJ_T0017660.1 MGP_C3HHeJ_G0015238.1 mouse_genomes_project 2 148454170 148507796 + BC039771 processed_transcript processed_transcript MGP_C3HHeJ_T0056333.1 MGP_C3HHeJ_G0025993.1 mouse_genomes_project 2 113113246 113115152 - MGP_C3HHeJ_P0056333 Olfr1306 protein_coding protein_coding MGP_C3HHeJ_T0004011.1 MGP_C3HHeJ_G0003553.1 mouse_genomes_project 2 131383461 131404979 + Gm14024 antisense antisense MGP_C3HHeJ_T0003819.1 MGP_C3HHeJ_G0003415.1 mouse_genomes_project 2 2931041 2935652 + Gm13267 antisense antisense MGP_C3HHeJ_T0003820.1 MGP_C3HHeJ_G0003415.1 mouse_genomes_project 2 2931131 2934423 + Gm13267 antisense antisense MGP_C3HHeJ_T0055489.1 MGP_C3HHeJ_G0025737.1 mouse_genomes_project 2 87551313 87554651 - MGP_C3HHeJ_P0055489 Pramel7 protein_coding protein_coding MGP_C3HHeJ_T0055490.1 MGP_C3HHeJ_G0025737.1 mouse_genomes_project 2 87553116 87558894 - Pramel7 protein_coding processed_transcript MGP_C3HHeJ_T0055491.1 MGP_C3HHeJ_G0025737.1 mouse_genomes_project 2 87553210 87562889 - Pramel7 protein_coding processed_transcript MGP_C3HHeJ_T0055492.1 MGP_C3HHeJ_G0025737.1 mouse_genomes_project 2 87553352 87558903 - Pramel7 protein_coding processed_transcript MGP_C3HHeJ_T0100470.1 MGP_C3HHeJ_G0038664.1 mouse_genomes_project 2 97666308 97666431 + Gm22957 snoRNA snoRNA MGP_C3HHeJ_T0052894.1 MGP_C3HHeJ_G0025189.1 mouse_genomes_project 2 23248397 23258092 - MGP_C3HHeJ_P0052894 Mamdc4 protein_coding protein_coding MGP_C3HHeJ_T0052895.1 MGP_C3HHeJ_G0025189.1 mouse_genomes_project 2 23248419 23258134 - MGP_C3HHeJ_P0052895 Mamdc4 protein_coding protein_coding MGP_C3HHeJ_T0052896.1 MGP_C3HHeJ_G0025189.1 mouse_genomes_project 2 23248592 23257030 - MGP_C3HHeJ_P0052896 Mamdc4 protein_coding protein_coding MGP_C3HHeJ_T0052897.1 MGP_C3HHeJ_G0025189.1 mouse_genomes_project 2 23255233 23256261 - Mamdc4 protein_coding processed_transcript MGP_C3HHeJ_T0052898.1 MGP_C3HHeJ_G0025189.1 mouse_genomes_project 2 23255277 23255891 - Mamdc4 protein_coding processed_transcript MGP_C3HHeJ_T0052899.1 MGP_C3HHeJ_G0025189.1 mouse_genomes_project 2 23256949 23261620 - Mamdc4 protein_coding processed_transcript MGP_C3HHeJ_T0003812.1 MGP_C3HHeJ_G0003411.1 mouse_genomes_project 2 1117763 1126714 - 1700080N15Rik antisense antisense MGP_C3HHeJ_T0003813.1 MGP_C3HHeJ_G0003411.1 mouse_genomes_project 2 1117765 1126714 - 1700080N15Rik antisense antisense MGP_C3HHeJ_T0003814.1 MGP_C3HHeJ_G0003411.1 mouse_genomes_project 2 1121173 1126712 - 1700080N15Rik antisense antisense MGP_C3HHeJ_T0058858.1 MGP_C3HHeJ_G0026595.1 mouse_genomes_project 2 168586294 168588434 - Spata25 protein_coding processed_transcript MGP_C3HHeJ_T0058859.1 MGP_C3HHeJ_G0026595.1 mouse_genomes_project 2 168587287 168588443 - MGP_C3HHeJ_P0058859 Spata25 protein_coding protein_coding MGP_C3HHeJ_T0001002.1 MGP_C3HHeJ_G0000939.1 mouse_genomes_project 2 9670060 9671462 - TEC TEC MGP_C3HHeJ_T0057369.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132894458 133038975 - MGP_C3HHeJ_P0057369 4930402H24Rik protein_coding protein_coding MGP_C3HHeJ_T0057370.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132899065 132909981 - MGP_C3HHeJ_P0057370 4930402H24Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057371.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132900534 132917172 - MGP_C3HHeJ_P0057371 4930402H24Rik protein_coding protein_coding MGP_C3HHeJ_T0057372.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132929770 132932753 - 4930402H24Rik protein_coding retained_intron MGP_C3HHeJ_T0057373.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132932249 132951687 - 4930402H24Rik protein_coding processed_transcript MGP_C3HHeJ_T0057374.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132932260 132964901 - MGP_C3HHeJ_P0057374 4930402H24Rik protein_coding protein_coding MGP_C3HHeJ_T0057375.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132941707 133039061 - 4930402H24Rik protein_coding retained_intron MGP_C3HHeJ_T0057376.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132971381 132972458 - 4930402H24Rik protein_coding processed_transcript MGP_C3HHeJ_T0057377.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132971578 133007184 - 4930402H24Rik protein_coding processed_transcript MGP_C3HHeJ_T0057378.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132979067 133039040 - 4930402H24Rik protein_coding retained_intron MGP_C3HHeJ_T0057379.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132999274 133010771 - 4930402H24Rik protein_coding processed_transcript MGP_C3HHeJ_T0057380.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 133001205 133039074 - MGP_C3HHeJ_P0057380 4930402H24Rik protein_coding protein_coding MGP_C3HHeJ_T0057381.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 133007151 133039066 - MGP_C3HHeJ_P0057381 4930402H24Rik protein_coding protein_coding MGP_C3HHeJ_T0057382.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 133007186 133039063 - MGP_C3HHeJ_P0057382 4930402H24Rik protein_coding protein_coding MGP_C3HHeJ_T0057383.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 133009142 133111481 - MGP_C3HHeJ_P0057383 4930402H24Rik protein_coding protein_coding MGP_C3HHeJ_T0055845.1 MGP_C3HHeJ_G0025878.1 mouse_genomes_project 2 92109203 92315273 + MGP_C3HHeJ_P0055845 Ambra1 protein_coding protein_coding MGP_C3HHeJ_T0055846.1 MGP_C3HHeJ_G0025878.1 mouse_genomes_project 2 92109207 92315272 + MGP_C3HHeJ_P0055846 Ambra1 protein_coding protein_coding MGP_C3HHeJ_T0055847.1 MGP_C3HHeJ_G0025878.1 mouse_genomes_project 2 92109251 92197525 + Ambra1 protein_coding processed_transcript MGP_C3HHeJ_T0055848.1 MGP_C3HHeJ_G0025878.1 mouse_genomes_project 2 92109251 92197525 + Ambra1 protein_coding processed_transcript MGP_C3HHeJ_T0055849.1 MGP_C3HHeJ_G0025878.1 mouse_genomes_project 2 92109253 92315272 + MGP_C3HHeJ_P0055849 Ambra1 protein_coding protein_coding MGP_C3HHeJ_T0055850.1 MGP_C3HHeJ_G0025878.1 mouse_genomes_project 2 92109294 92315273 + MGP_C3HHeJ_P0055850 Ambra1 protein_coding protein_coding MGP_C3HHeJ_T0055851.1 MGP_C3HHeJ_G0025878.1 mouse_genomes_project 2 92150414 92315273 + MGP_C3HHeJ_P0055851 Ambra1 protein_coding protein_coding MGP_C3HHeJ_T0055852.1 MGP_C3HHeJ_G0025878.1 mouse_genomes_project 2 92157802 92212328 + Ambra1 protein_coding processed_transcript MGP_C3HHeJ_T0055853.1 MGP_C3HHeJ_G0025878.1 mouse_genomes_project 2 92198223 92213161 + Ambra1 protein_coding processed_transcript MGP_C3HHeJ_T0001004.1 MGP_C3HHeJ_G0000941.1 mouse_genomes_project 2 9705853 9708465 - TEC TEC MGP_C3HHeJ_T0058201.1 MGP_C3HHeJ_G0026449.1 mouse_genomes_project 2 158542828 158544613 + MGP_C3HHeJ_P0058201 Map1lc3a protein_coding protein_coding MGP_C3HHeJ_T0058202.1 MGP_C3HHeJ_G0026449.1 mouse_genomes_project 2 158543074 158544610 + Map1lc3a protein_coding processed_transcript MGP_C3HHeJ_T0058203.1 MGP_C3HHeJ_G0026449.1 mouse_genomes_project 2 158543420 158544608 + Map1lc3a protein_coding processed_transcript MGP_C3HHeJ_T0007259.1 MGP_C3HHeJ_G0005947.1 mouse_genomes_project 2 140316953 140323743 - Gm14062 lincRNA lincRNA MGP_C3HHeJ_T0017508.1 MGP_C3HHeJ_G0015155.1 mouse_genomes_project 2 7555462 7596725 - Gm13261 processed_transcript processed_transcript MGP_C3HHeJ_T0054184.1 MGP_C3HHeJ_G0025412.1 mouse_genomes_project 2 35149275 35150223 + MGP_C3HHeJ_P0054184 Olfr352 protein_coding protein_coding MGP_C3HHeJ_T0013693.1 MGP_C3HHeJ_G0011797.1 mouse_genomes_project 2 160188395 160202687 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056937.1 MGP_C3HHeJ_G0026123.1 mouse_genomes_project 2 123778133 123838199 - MGP_C3HHeJ_P0056937 Spg11 protein_coding protein_coding MGP_C3HHeJ_T0056938.1 MGP_C3HHeJ_G0026123.1 mouse_genomes_project 2 123811978 123838109 - Spg11 protein_coding processed_transcript MGP_C3HHeJ_T0056939.1 MGP_C3HHeJ_G0026123.1 mouse_genomes_project 2 123826377 123838188 - Spg11 protein_coding processed_transcript MGP_C3HHeJ_T0055630.1 MGP_C3HHeJ_G0025846.1 mouse_genomes_project 2 90327994 90361615 - MGP_C3HHeJ_P0055630 protein_coding protein_coding MGP_C3HHeJ_T0013441.1 MGP_C3HHeJ_G0011545.1 mouse_genomes_project 2 67340164 67340703 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052336.1 MGP_C3HHeJ_G0025090.1 mouse_genomes_project 2 10925043 10925950 + MGP_C3HHeJ_P0052336 Vim protein_coding protein_coding MGP_C3HHeJ_T0052337.1 MGP_C3HHeJ_G0025090.1 mouse_genomes_project 2 10925068 10933930 + MGP_C3HHeJ_P0052337 Vim protein_coding protein_coding MGP_C3HHeJ_T0052338.1 MGP_C3HHeJ_G0025090.1 mouse_genomes_project 2 10925397 10933929 + MGP_C3HHeJ_P0052338 Vim protein_coding protein_coding MGP_C3HHeJ_T0052339.1 MGP_C3HHeJ_G0025090.1 mouse_genomes_project 2 10925438 10929721 + Vim protein_coding retained_intron MGP_C3HHeJ_T0052340.1 MGP_C3HHeJ_G0025090.1 mouse_genomes_project 2 10925639 10928565 + Vim protein_coding retained_intron MGP_C3HHeJ_T0052341.1 MGP_C3HHeJ_G0025090.1 mouse_genomes_project 2 10930484 10933582 + Vim protein_coding retained_intron MGP_C3HHeJ_T0013590.1 MGP_C3HHeJ_G0011694.1 mouse_genomes_project 2 121447194 121447529 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013674.1 MGP_C3HHeJ_G0011778.1 mouse_genomes_project 2 155686769 155686986 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099196.1 MGP_C3HHeJ_G0037390.1 mouse_genomes_project 2 70904856 70904960 + Gm23253 snRNA snRNA MGP_C3HHeJ_T0052886.1 MGP_C3HHeJ_G0025187.1 mouse_genomes_project 2 23201458 23232126 - MGP_C3HHeJ_P0052886 Traf2 protein_coding protein_coding MGP_C3HHeJ_T0052887.1 MGP_C3HHeJ_G0025187.1 mouse_genomes_project 2 23202342 23223931 - Traf2 protein_coding retained_intron MGP_C3HHeJ_T0052888.1 MGP_C3HHeJ_G0025187.1 mouse_genomes_project 2 23202342 23232096 - MGP_C3HHeJ_P0052888 Traf2 protein_coding protein_coding MGP_C3HHeJ_T0059463.1 MGP_C3HHeJ_G0026728.1 mouse_genomes_project 2 185788160 185789685 + MGP_C3HHeJ_P0059463 Ppdpf protein_coding protein_coding MGP_C3HHeJ_T0059464.1 MGP_C3HHeJ_G0026728.1 mouse_genomes_project 2 185788209 185789655 + Ppdpf protein_coding retained_intron MGP_C3HHeJ_T0059465.1 MGP_C3HHeJ_G0026728.1 mouse_genomes_project 2 185788249 185789418 + MGP_C3HHeJ_P0059465 Ppdpf protein_coding protein_coding MGP_C3HHeJ_T0059466.1 MGP_C3HHeJ_G0026728.1 mouse_genomes_project 2 185788260 185789418 + Ppdpf protein_coding retained_intron MGP_C3HHeJ_T0059467.1 MGP_C3HHeJ_G0026728.1 mouse_genomes_project 2 185788448 185789418 + Ppdpf protein_coding retained_intron MGP_C3HHeJ_T0059468.1 MGP_C3HHeJ_G0026728.1 mouse_genomes_project 2 185788826 185789418 + Ppdpf protein_coding retained_intron MGP_C3HHeJ_T0055524.1 MGP_C3HHeJ_G0025762.1 mouse_genomes_project 2 88044069 88045042 - MGP_C3HHeJ_P0055524 Olfr1156 protein_coding protein_coding MGP_C3HHeJ_T0010270.1 MGP_C3HHeJ_G0008403.1 mouse_genomes_project 2 7712115 7712218 + Gm22239 miRNA miRNA MGP_C3HHeJ_T0099208.1 MGP_C3HHeJ_G0037402.1 mouse_genomes_project 2 118658243 118658407 + Gm25189 snRNA snRNA MGP_C3HHeJ_T0053490.1 MGP_C3HHeJ_G0025299.1 mouse_genomes_project 2 28231225 28293413 + MGP_C3HHeJ_P0053490 Nup188 protein_coding protein_coding MGP_C3HHeJ_T0053491.1 MGP_C3HHeJ_G0025299.1 mouse_genomes_project 2 28231225 28256492 + MGP_C3HHeJ_P0053491 Nup188 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053492.1 MGP_C3HHeJ_G0025299.1 mouse_genomes_project 2 28231245 28252252 + Nup188 protein_coding processed_transcript MGP_C3HHeJ_T0053493.1 MGP_C3HHeJ_G0025299.1 mouse_genomes_project 2 28231252 28251970 + MGP_C3HHeJ_P0053493 Nup188 protein_coding protein_coding MGP_C3HHeJ_T0053494.1 MGP_C3HHeJ_G0025299.1 mouse_genomes_project 2 28231255 28251969 + MGP_C3HHeJ_P0053494 Nup188 protein_coding protein_coding MGP_C3HHeJ_T0053495.1 MGP_C3HHeJ_G0025299.1 mouse_genomes_project 2 28231257 28275841 + Nup188 protein_coding retained_intron MGP_C3HHeJ_T0053496.1 MGP_C3HHeJ_G0025299.1 mouse_genomes_project 2 28292086 28293292 + Nup188 protein_coding retained_intron MGP_C3HHeJ_T0058071.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804137 156848853 + MGP_C3HHeJ_P0058071 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058072.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804137 156848853 + MGP_C3HHeJ_P0058072 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058073.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804140 156848853 + MGP_C3HHeJ_P0058073 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058074.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804140 156848853 + MGP_C3HHeJ_P0058074 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058075.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804140 156848853 + MGP_C3HHeJ_P0058075 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058076.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804141 156848853 + MGP_C3HHeJ_P0058076 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058077.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804141 156848853 + MGP_C3HHeJ_P0058077 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058078.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804141 156848853 + MGP_C3HHeJ_P0058078 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058079.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804141 156848849 + MGP_C3HHeJ_P0058079 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058080.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804304 156848439 + MGP_C3HHeJ_P0058080 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058081.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156822426 156824585 + Dnmt3b protein_coding retained_intron MGP_C3HHeJ_T0058082.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156825995 156827043 + Dnmt3b protein_coding retained_intron MGP_C3HHeJ_T0058798.1 MGP_C3HHeJ_G0026571.1 mouse_genomes_project 2 168194255 168197669 - MGP_C3HHeJ_P0058798 Trp53tg5 protein_coding protein_coding MGP_C3HHeJ_T0055391.1 MGP_C3HHeJ_G0025651.1 mouse_genomes_project 2 84794786 84798906 + Tnks1bp1 protein_coding processed_transcript MGP_C3HHeJ_T0055392.1 MGP_C3HHeJ_G0025651.1 mouse_genomes_project 2 84794819 84821473 + Tnks1bp1 protein_coding processed_transcript MGP_C3HHeJ_T0055393.1 MGP_C3HHeJ_G0025651.1 mouse_genomes_project 2 84795396 84810840 + MGP_C3HHeJ_P0055393 Tnks1bp1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055394.1 MGP_C3HHeJ_G0025651.1 mouse_genomes_project 2 84797233 84798824 + Tnks1bp1 protein_coding processed_transcript MGP_C3HHeJ_T0055395.1 MGP_C3HHeJ_G0025651.1 mouse_genomes_project 2 84797233 84821477 + MGP_C3HHeJ_P0055395 Tnks1bp1 protein_coding protein_coding MGP_C3HHeJ_T0055396.1 MGP_C3HHeJ_G0025651.1 mouse_genomes_project 2 84797381 84821467 + Tnks1bp1 protein_coding processed_transcript MGP_C3HHeJ_T0055397.1 MGP_C3HHeJ_G0025651.1 mouse_genomes_project 2 84797666 84805319 + Tnks1bp1 protein_coding processed_transcript MGP_C3HHeJ_T0055398.1 MGP_C3HHeJ_G0025651.1 mouse_genomes_project 2 84804920 84821477 + MGP_C3HHeJ_P0055398 Tnks1bp1 protein_coding protein_coding MGP_C3HHeJ_T0055078.1 MGP_C3HHeJ_G0025578.1 mouse_genomes_project 2 74197375 74200067 + MGP_C3HHeJ_P0055078 Hoxd12 protein_coding protein_coding MGP_C3HHeJ_T0052595.1 MGP_C3HHeJ_G0025142.1 mouse_genomes_project 2 21948916 21964245 + MGP_C3HHeJ_P0052595 Il1rn protein_coding protein_coding MGP_C3HHeJ_T0052596.1 MGP_C3HHeJ_G0025142.1 mouse_genomes_project 2 21948919 21951473 + Il1rn protein_coding retained_intron MGP_C3HHeJ_T0052597.1 MGP_C3HHeJ_G0025142.1 mouse_genomes_project 2 21948919 21962208 + MGP_C3HHeJ_P0052597 Il1rn protein_coding protein_coding MGP_C3HHeJ_T0052598.1 MGP_C3HHeJ_G0025142.1 mouse_genomes_project 2 21957351 21962558 + MGP_C3HHeJ_P0052598 Il1rn protein_coding protein_coding MGP_C3HHeJ_T0052599.1 MGP_C3HHeJ_G0025142.1 mouse_genomes_project 2 21957373 21963687 + MGP_C3HHeJ_P0052599 Il1rn protein_coding protein_coding MGP_C3HHeJ_T0052600.1 MGP_C3HHeJ_G0025142.1 mouse_genomes_project 2 21957411 21959105 + Il1rn protein_coding processed_transcript MGP_C3HHeJ_T0013341.1 MGP_C3HHeJ_G0011445.1 mouse_genomes_project 2 31801920 31804168 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057433.1 MGP_C3HHeJ_G0026246.1 mouse_genomes_project 2 133421903 133427250 + Ap5s1 protein_coding processed_transcript MGP_C3HHeJ_T0057434.1 MGP_C3HHeJ_G0026246.1 mouse_genomes_project 2 133421911 133429668 + MGP_C3HHeJ_P0057434 Ap5s1 protein_coding protein_coding MGP_C3HHeJ_T0057435.1 MGP_C3HHeJ_G0026246.1 mouse_genomes_project 2 133426172 133429934 + Ap5s1 protein_coding processed_transcript MGP_C3HHeJ_T0057436.1 MGP_C3HHeJ_G0026246.1 mouse_genomes_project 2 133426199 133429526 + Ap5s1 protein_coding processed_transcript MGP_C3HHeJ_T0057437.1 MGP_C3HHeJ_G0026246.1 mouse_genomes_project 2 133426226 133430443 + MGP_C3HHeJ_P0057437 Ap5s1 protein_coding protein_coding MGP_C3HHeJ_T0057438.1 MGP_C3HHeJ_G0026246.1 mouse_genomes_project 2 133426242 133430446 + MGP_C3HHeJ_P0057438 Ap5s1 protein_coding protein_coding MGP_C3HHeJ_T0057439.1 MGP_C3HHeJ_G0026246.1 mouse_genomes_project 2 133426242 133430446 + MGP_C3HHeJ_P0057439 Ap5s1 protein_coding protein_coding MGP_C3HHeJ_T0057440.1 MGP_C3HHeJ_G0026246.1 mouse_genomes_project 2 133426406 133429796 + MGP_C3HHeJ_P0057440 Ap5s1 protein_coding protein_coding MGP_C3HHeJ_T0099181.1 MGP_C3HHeJ_G0037375.1 mouse_genomes_project 2 22995783 22995878 + Gm25220 snRNA snRNA MGP_C3HHeJ_T0007297.1 MGP_C3HHeJ_G0005978.1 mouse_genomes_project 2 166317571 166318646 + Gm14246 lincRNA lincRNA MGP_C3HHeJ_T0052018.1 MGP_C3HHeJ_G0025041.1 mouse_genomes_project 2 429789 449006 - MGP_C3HHeJ_P0052018 Suv39h2 protein_coding protein_coding MGP_C3HHeJ_T0052019.1 MGP_C3HHeJ_G0025041.1 mouse_genomes_project 2 431554 448935 - MGP_C3HHeJ_P0052019 Suv39h2 protein_coding protein_coding MGP_C3HHeJ_T0052020.1 MGP_C3HHeJ_G0025041.1 mouse_genomes_project 2 431555 448394 - MGP_C3HHeJ_P0052020 Suv39h2 protein_coding protein_coding MGP_C3HHeJ_T0052021.1 MGP_C3HHeJ_G0025041.1 mouse_genomes_project 2 431577 448944 - MGP_C3HHeJ_P0052021 Suv39h2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0017619.1 MGP_C3HHeJ_G0015219.1 mouse_genomes_project 2 115929582 115974159 + Gm13972 processed_transcript processed_transcript MGP_C3HHeJ_T0007070.1 MGP_C3HHeJ_G0005795.1 mouse_genomes_project 2 21934567 21935100 + Gm13411 lincRNA lincRNA MGP_C3HHeJ_T0055405.1 MGP_C3HHeJ_G0025656.1 mouse_genomes_project 2 85172963 85173893 - MGP_C3HHeJ_P0055405 Olfr992 protein_coding protein_coding MGP_C3HHeJ_T0053576.1 MGP_C3HHeJ_G0025308.1 mouse_genomes_project 2 28782636 28799352 + MGP_C3HHeJ_P0053576 Ntmt1 protein_coding protein_coding MGP_C3HHeJ_T0053577.1 MGP_C3HHeJ_G0025308.1 mouse_genomes_project 2 28782751 28799336 + MGP_C3HHeJ_P0053577 Ntmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053578.1 MGP_C3HHeJ_G0025308.1 mouse_genomes_project 2 28782752 28798704 + MGP_C3HHeJ_P0053578 Ntmt1 protein_coding protein_coding MGP_C3HHeJ_T0053579.1 MGP_C3HHeJ_G0025308.1 mouse_genomes_project 2 28782767 28791914 + Ntmt1 protein_coding processed_transcript MGP_C3HHeJ_T0053580.1 MGP_C3HHeJ_G0025308.1 mouse_genomes_project 2 28782804 28792378 + Ntmt1 protein_coding processed_transcript MGP_C3HHeJ_T0053581.1 MGP_C3HHeJ_G0025308.1 mouse_genomes_project 2 28782923 28798871 + MGP_C3HHeJ_P0053581 Ntmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053582.1 MGP_C3HHeJ_G0025308.1 mouse_genomes_project 2 28783000 28797009 + MGP_C3HHeJ_P0053582 Ntmt1 protein_coding protein_coding MGP_C3HHeJ_T0053583.1 MGP_C3HHeJ_G0025308.1 mouse_genomes_project 2 28794456 28797129 + MGP_C3HHeJ_P0053583 Ntmt1 protein_coding protein_coding MGP_C3HHeJ_T0053584.1 MGP_C3HHeJ_G0025308.1 mouse_genomes_project 2 28796162 28798878 + MGP_C3HHeJ_P0053584 Ntmt1 protein_coding protein_coding MGP_C3HHeJ_T0055423.1 MGP_C3HHeJ_G0025674.1 mouse_genomes_project 2 85683886 85684822 + MGP_C3HHeJ_P0055423 Olfr1023 protein_coding protein_coding MGP_C3HHeJ_T0099184.1 MGP_C3HHeJ_G0037378.1 mouse_genomes_project 2 27844899 27844996 - Gm23865 snRNA snRNA MGP_C3HHeJ_T0013575.1 MGP_C3HHeJ_G0011679.1 mouse_genomes_project 2 112914436 112915647 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004112.1 MGP_C3HHeJ_G0003629.1 mouse_genomes_project 2 178448054 178509694 - Gm10714 antisense antisense MGP_C3HHeJ_T0004113.1 MGP_C3HHeJ_G0003629.1 mouse_genomes_project 2 178448576 178448905 - Gm10714 antisense antisense MGP_C3HHeJ_T0013389.1 MGP_C3HHeJ_G0011493.1 mouse_genomes_project 2 49216154 49217018 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010393.1 MGP_C3HHeJ_G0008526.1 mouse_genomes_project 2 166749309 166749434 + Gm22174 miRNA miRNA MGP_C3HHeJ_T0101897.1 MGP_C3HHeJ_G0039862.1 mouse_genomes_project 2 86352557 86353500 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001042.1 MGP_C3HHeJ_G0000979.1 mouse_genomes_project 2 36855956 36858552 - TEC TEC MGP_C3HHeJ_T0007299.1 MGP_C3HHeJ_G0005980.1 mouse_genomes_project 2 166780012 166802014 + Gm11454 lincRNA lincRNA MGP_C3HHeJ_T0059210.1 MGP_C3HHeJ_G0026670.1 mouse_genomes_project 2 177287045 177299057 + MGP_C3HHeJ_P0059210 Rbm38 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059211.1 MGP_C3HHeJ_G0026670.1 mouse_genomes_project 2 177287059 177299872 + Rbm38 protein_coding retained_intron MGP_C3HHeJ_T0059212.1 MGP_C3HHeJ_G0026670.1 mouse_genomes_project 2 177287186 177298953 + MGP_C3HHeJ_P0059212 Rbm38 protein_coding protein_coding MGP_C3HHeJ_T0059213.1 MGP_C3HHeJ_G0026670.1 mouse_genomes_project 2 177287257 177298794 + MGP_C3HHeJ_P0059213 Rbm38 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059214.1 MGP_C3HHeJ_G0026670.1 mouse_genomes_project 2 177287584 177298853 + MGP_C3HHeJ_P0059214 Rbm38 protein_coding protein_coding MGP_C3HHeJ_T0059215.1 MGP_C3HHeJ_G0026670.1 mouse_genomes_project 2 177288195 177299844 + Rbm38 protein_coding retained_intron MGP_C3HHeJ_T0013431.1 MGP_C3HHeJ_G0011535.1 mouse_genomes_project 2 63673070 63673848 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059175.1 MGP_C3HHeJ_G0026654.1 mouse_genomes_project 2 174625706 174633124 + MGP_C3HHeJ_P0059175 Pfdn4 protein_coding protein_coding MGP_C3HHeJ_T0059176.1 MGP_C3HHeJ_G0026654.1 mouse_genomes_project 2 174625707 174633337 + MGP_C3HHeJ_P0059176 Pfdn4 protein_coding protein_coding MGP_C3HHeJ_T0013660.1 MGP_C3HHeJ_G0011764.1 mouse_genomes_project 2 150918158 150918652 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059471.1 MGP_C3HHeJ_G0026731.1 mouse_genomes_project 2 185821999 185824862 + MGP_C3HHeJ_P0059471 BC051628 protein_coding protein_coding MGP_C3HHeJ_T0059472.1 MGP_C3HHeJ_G0026731.1 mouse_genomes_project 2 185822025 185824457 + MGP_C3HHeJ_P0059472 BC051628 protein_coding protein_coding MGP_C3HHeJ_T0003875.1 MGP_C3HHeJ_G0003458.1 mouse_genomes_project 2 29930331 29935815 - Gm13441 antisense antisense MGP_C3HHeJ_T0054466.1 MGP_C3HHeJ_G0025466.1 mouse_genomes_project 2 51162177 51188542 - MGP_C3HHeJ_P0054466 Arl5a protein_coding unknown_likely_coding MGP_C3HHeJ_T0054467.1 MGP_C3HHeJ_G0025466.1 mouse_genomes_project 2 51162178 51188808 - MGP_C3HHeJ_P0054467 Arl5a protein_coding protein_coding MGP_C3HHeJ_T0054468.1 MGP_C3HHeJ_G0025466.1 mouse_genomes_project 2 51166620 51176614 - Arl5a protein_coding retained_intron MGP_C3HHeJ_T0013547.1 MGP_C3HHeJ_G0011651.1 mouse_genomes_project 2 104537490 104538222 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013619.1 MGP_C3HHeJ_G0011723.1 mouse_genomes_project 2 134930007 134930462 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059221.1 MGP_C3HHeJ_G0026673.1 mouse_genomes_project 2 177494486 177506799 - MGP_C3HHeJ_P0059221 Zbp1 protein_coding protein_coding MGP_C3HHeJ_T0059222.1 MGP_C3HHeJ_G0026673.1 mouse_genomes_project 2 177494489 177506773 - Zbp1 protein_coding retained_intron MGP_C3HHeJ_T0059223.1 MGP_C3HHeJ_G0026673.1 mouse_genomes_project 2 177501609 177506786 - MGP_C3HHeJ_P0059223 Zbp1 protein_coding protein_coding MGP_C3HHeJ_T0013477.1 MGP_C3HHeJ_G0011581.1 mouse_genomes_project 2 80231837 80232119 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013529.1 MGP_C3HHeJ_G0011633.1 mouse_genomes_project 2 97548606 97549276 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099217.1 MGP_C3HHeJ_G0037411.1 mouse_genomes_project 2 135293343 135293511 + Gm25704 snRNA snRNA MGP_C3HHeJ_T0007258.1 MGP_C3HHeJ_G0005946.1 mouse_genomes_project 2 140086790 140264136 + Gm14064 lincRNA lincRNA MGP_C3HHeJ_T0010367.1 MGP_C3HHeJ_G0008500.1 mouse_genomes_project 2 123737078 123737152 + Gm27325 miRNA miRNA MGP_C3HHeJ_T0000992.1 MGP_C3HHeJ_G0000929.1 mouse_genomes_project 2 7244172 7245854 + TEC TEC MGP_C3HHeJ_T0058691.1 MGP_C3HHeJ_G0026533.1 mouse_genomes_project 2 166669032 166699656 + MGP_C3HHeJ_P0058691 Ift52 protein_coding protein_coding MGP_C3HHeJ_T0058692.1 MGP_C3HHeJ_G0026533.1 mouse_genomes_project 2 166669169 166685374 + MGP_C3HHeJ_P0058692 Ift52 protein_coding protein_coding MGP_C3HHeJ_T0058693.1 MGP_C3HHeJ_G0026533.1 mouse_genomes_project 2 166669197 166676671 + Ift52 protein_coding processed_transcript MGP_C3HHeJ_T0058694.1 MGP_C3HHeJ_G0026533.1 mouse_genomes_project 2 166675572 166682533 + Ift52 protein_coding processed_transcript MGP_C3HHeJ_T0001050.1 MGP_C3HHeJ_G0000987.1 mouse_genomes_project 2 68192096 68195317 + TEC TEC MGP_C3HHeJ_T0052708.1 MGP_C3HHeJ_G0025156.1 mouse_genomes_project 2 22841546 22845467 - MGP_C3HHeJ_P0052708 Tor4a protein_coding protein_coding MGP_C3HHeJ_T0052709.1 MGP_C3HHeJ_G0025156.1 mouse_genomes_project 2 22843637 22845340 - MGP_C3HHeJ_P0052709 Tor4a protein_coding protein_coding MGP_C3HHeJ_T0052710.1 MGP_C3HHeJ_G0025156.1 mouse_genomes_project 2 22844372 22845352 - MGP_C3HHeJ_P0052710 Tor4a protein_coding protein_coding MGP_C3HHeJ_T0056317.1 MGP_C3HHeJ_G0025977.1 mouse_genomes_project 2 112291163 112292517 + MGP_C3HHeJ_P0056317 protein_coding protein_coding MGP_C3HHeJ_T0052679.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699069 22707592 + MGP_C3HHeJ_P0052679 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052680.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699087 22705273 + MGP_C3HHeJ_P0052680 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052681.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699093 22707591 + MGP_C3HHeJ_P0052681 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052682.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699098 22707592 + MGP_C3HHeJ_P0052682 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052683.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699117 22701590 + Nsmf protein_coding retained_intron MGP_C3HHeJ_T0052684.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699121 22699811 + Nsmf protein_coding retained_intron MGP_C3HHeJ_T0052685.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699127 22707592 + MGP_C3HHeJ_P0052685 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052686.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699127 22707592 + MGP_C3HHeJ_P0052686 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052687.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699139 22703767 + MGP_C3HHeJ_P0052687 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052688.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699149 22707592 + MGP_C3HHeJ_P0052688 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052689.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699170 22707592 + MGP_C3HHeJ_P0052689 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052690.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699182 22707592 + MGP_C3HHeJ_P0052690 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052691.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699182 22707339 + MGP_C3HHeJ_P0052691 Nsmf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052692.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22700594 22702058 + Nsmf protein_coding retained_intron MGP_C3HHeJ_T0052693.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22701857 22707592 + MGP_C3HHeJ_P0052693 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052694.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22702286 22704370 + Nsmf protein_coding retained_intron MGP_C3HHeJ_T0052695.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22704846 22705818 + Nsmf protein_coding retained_intron MGP_C3HHeJ_T0052696.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22705539 22706420 + Nsmf protein_coding retained_intron MGP_C3HHeJ_T0007156.1 MGP_C3HHeJ_G0005863.1 mouse_genomes_project 2 74280971 74281614 + Gm14426 lincRNA lincRNA MGP_C3HHeJ_T0007335.1 MGP_C3HHeJ_G0006010.1 mouse_genomes_project 2 174157796 174167209 - A630075F10Rik lincRNA lincRNA MGP_C3HHeJ_T0010379.1 MGP_C3HHeJ_G0008512.1 mouse_genomes_project 2 148634367 148634555 + Gm25026 miRNA miRNA MGP_C3HHeJ_T0013692.1 MGP_C3HHeJ_G0011796.1 mouse_genomes_project 2 160188395 160202690 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052329.1 MGP_C3HHeJ_G0025088.1 mouse_genomes_project 2 10610781 10832196 - MGP_C3HHeJ_P0052329 Cubn protein_coding unknown_likely_coding MGP_C3HHeJ_T0052330.1 MGP_C3HHeJ_G0025088.1 mouse_genomes_project 2 10611867 10832196 - MGP_C3HHeJ_P0052330 Cubn protein_coding protein_coding MGP_C3HHeJ_T0052331.1 MGP_C3HHeJ_G0025088.1 mouse_genomes_project 2 10761848 10796303 - Cubn protein_coding retained_intron MGP_C3HHeJ_T0052332.1 MGP_C3HHeJ_G0025088.1 mouse_genomes_project 2 10797315 10800156 - Cubn protein_coding retained_intron MGP_C3HHeJ_T0013709.1 MGP_C3HHeJ_G0011813.1 mouse_genomes_project 2 168225335 168226060 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007271.1 MGP_C3HHeJ_G0005956.1 mouse_genomes_project 2 152132181 152137039 + Gm14135 lincRNA lincRNA MGP_C3HHeJ_T0057925.1 MGP_C3HHeJ_G0026365.1 mouse_genomes_project 2 154957246 154992400 + MGP_C3HHeJ_P0057925 Angpt4 protein_coding protein_coding MGP_C3HHeJ_T0052494.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18402443 18525696 - MGP_C3HHeJ_P0052494 Arhgap21 protein_coding protein_coding MGP_C3HHeJ_T0052495.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18402443 18524536 - MGP_C3HHeJ_P0052495 Arhgap21 protein_coding protein_coding MGP_C3HHeJ_T0052496.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18402464 18524535 - MGP_C3HHeJ_P0052496 Arhgap21 protein_coding protein_coding MGP_C3HHeJ_T0052497.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18403118 18525341 - MGP_C3HHeJ_P0052497 Arhgap21 protein_coding protein_coding MGP_C3HHeJ_T0052498.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18404476 18407772 - Arhgap21 protein_coding retained_intron MGP_C3HHeJ_T0052499.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18404567 18439290 - MGP_C3HHeJ_P0052499 Arhgap21 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052500.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18404768 18414413 - Arhgap21 protein_coding retained_intron MGP_C3HHeJ_T0052501.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18404904 18409156 - Arhgap21 protein_coding retained_intron MGP_C3HHeJ_T0052502.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18407565 18410230 - Arhgap21 protein_coding processed_transcript MGP_C3HHeJ_T0052503.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18407566 18414406 - Arhgap21 protein_coding processed_transcript MGP_C3HHeJ_T0052504.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18413439 18426910 - MGP_C3HHeJ_P0052504 Arhgap21 protein_coding protein_coding MGP_C3HHeJ_T0052505.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18413953 18415627 - Arhgap21 protein_coding retained_intron MGP_C3HHeJ_T0052506.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18442418 18470855 - Arhgap21 protein_coding processed_transcript MGP_C3HHeJ_T0052507.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18445960 18500369 - MGP_C3HHeJ_P0052507 Arhgap21 protein_coding protein_coding MGP_C3HHeJ_T0052508.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18470960 18525440 - MGP_C3HHeJ_P0052508 Arhgap21 protein_coding protein_coding MGP_C3HHeJ_T0052509.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18524412 18525299 - Arhgap21 protein_coding processed_transcript MGP_C3HHeJ_T0052510.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18524437 18525647 - Arhgap21 protein_coding processed_transcript MGP_C3HHeJ_T0052511.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18524504 18525695 - Arhgap21 protein_coding processed_transcript MGP_C3HHeJ_T0055417.1 MGP_C3HHeJ_G0025668.1 mouse_genomes_project 2 85579793 85580732 + MGP_C3HHeJ_P0055417 Olfr1015 protein_coding protein_coding MGP_C3HHeJ_T0101904.1 MGP_C3HHeJ_G0039869.1 mouse_genomes_project 2 87319907 87321268 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0052619.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22226418 22384095 - MGP_C3HHeJ_P0052619 Cacna1b protein_coding protein_coding MGP_C3HHeJ_T0052620.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22226425 22384072 - MGP_C3HHeJ_P0052620 Cacna1b protein_coding protein_coding MGP_C3HHeJ_T0052621.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22228906 22383990 - MGP_C3HHeJ_P0052621 Cacna1b protein_coding protein_coding MGP_C3HHeJ_T0052622.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22228910 22230066 - MGP_C3HHeJ_P0052622 Cacna1b protein_coding protein_coding MGP_C3HHeJ_T0052623.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22229101 22383990 - MGP_C3HHeJ_P0052623 Cacna1b protein_coding protein_coding MGP_C3HHeJ_T0052624.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22229101 22383990 - MGP_C3HHeJ_P0052624 Cacna1b protein_coding protein_coding MGP_C3HHeJ_T0052625.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22230522 22240854 - MGP_C3HHeJ_P0052625 Cacna1b protein_coding protein_coding MGP_C3HHeJ_T0052626.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22232463 22259529 - MGP_C3HHeJ_P0052626 Cacna1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052627.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22245131 22254557 - MGP_C3HHeJ_P0052627 Cacna1b protein_coding protein_coding MGP_C3HHeJ_T0052628.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22301488 22307857 - MGP_C3HHeJ_P0052628 Cacna1b protein_coding protein_coding MGP_C3HHeJ_T0101524.1 MGP_C3HHeJ_G0026739.1 mouse_genomes_project 2 185991292 185994651 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101525.1 MGP_C3HHeJ_G0026739.1 mouse_genomes_project 2 185991453 185994264 + unitary_pseudogene unitary_pseudogene MGP_C3HHeJ_T0053134.1 MGP_C3HHeJ_G0025236.1 mouse_genomes_project 2 24666886 24680756 - MGP_C3HHeJ_P0053134 Surf4 protein_coding protein_coding MGP_C3HHeJ_T0053135.1 MGP_C3HHeJ_G0025236.1 mouse_genomes_project 2 24668808 24680230 - MGP_C3HHeJ_P0053135 Surf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053136.1 MGP_C3HHeJ_G0025236.1 mouse_genomes_project 2 24671816 24680609 - MGP_C3HHeJ_P0053136 Surf4 protein_coding protein_coding MGP_C3HHeJ_T0059093.1 MGP_C3HHeJ_G0026637.1 mouse_genomes_project 2 171894848 171940526 + Ptpn1 protein_coding processed_transcript MGP_C3HHeJ_T0059094.1 MGP_C3HHeJ_G0026637.1 mouse_genomes_project 2 171895118 171945174 + MGP_C3HHeJ_P0059094 Ptpn1 protein_coding protein_coding MGP_C3HHeJ_T0059095.1 MGP_C3HHeJ_G0026637.1 mouse_genomes_project 2 171895163 171932403 + Ptpn1 protein_coding processed_transcript MGP_C3HHeJ_T0059096.1 MGP_C3HHeJ_G0026637.1 mouse_genomes_project 2 171895163 171945174 + Ptpn1 protein_coding processed_transcript MGP_C3HHeJ_T0059097.1 MGP_C3HHeJ_G0026637.1 mouse_genomes_project 2 171895186 171928305 + Ptpn1 protein_coding processed_transcript MGP_C3HHeJ_T0059098.1 MGP_C3HHeJ_G0026637.1 mouse_genomes_project 2 171895186 171932351 + Ptpn1 protein_coding processed_transcript MGP_C3HHeJ_T0059099.1 MGP_C3HHeJ_G0026637.1 mouse_genomes_project 2 171915122 171929685 + Ptpn1 protein_coding processed_transcript MGP_C3HHeJ_T0007118.1 MGP_C3HHeJ_G0005832.1 mouse_genomes_project 2 50070649 50074648 - lincRNA lincRNA MGP_C3HHeJ_T0100473.1 MGP_C3HHeJ_G0038667.1 mouse_genomes_project 2 104972821 104972951 - Gm22501 snoRNA snoRNA MGP_C3HHeJ_T0001025.1 MGP_C3HHeJ_G0000962.1 mouse_genomes_project 2 21054404 21055922 + TEC TEC MGP_C3HHeJ_T0100513.1 MGP_C3HHeJ_G0038707.1 mouse_genomes_project 2 170969330 170969419 + Gm23201 snoRNA snoRNA MGP_C3HHeJ_T0057475.1 MGP_C3HHeJ_G0026251.1 mouse_genomes_project 2 133792646 133809109 - MGP_C3HHeJ_P0057475 Adra1d protein_coding protein_coding MGP_C3HHeJ_T0011394.1 MGP_C3HHeJ_G0009527.1 mouse_genomes_project 2 18767714 18767891 - Gm23007 misc_RNA misc_RNA MGP_C3HHeJ_T0053892.1 MGP_C3HHeJ_G0025354.1 mouse_genomes_project 2 30845710 30847969 - 6330409D20Rik protein_coding processed_transcript MGP_C3HHeJ_T0053893.1 MGP_C3HHeJ_G0025354.1 mouse_genomes_project 2 30845710 30853837 - MGP_C3HHeJ_P0053893 6330409D20Rik protein_coding protein_coding MGP_C3HHeJ_T0054495.1 MGP_C3HHeJ_G0025473.1 mouse_genomes_project 2 53296472 53980588 + MGP_C3HHeJ_P0054495 Galnt13 protein_coding protein_coding MGP_C3HHeJ_T0054496.1 MGP_C3HHeJ_G0025473.1 mouse_genomes_project 2 53296542 53980588 + MGP_C3HHeJ_P0054496 Galnt13 protein_coding protein_coding MGP_C3HHeJ_T0054497.1 MGP_C3HHeJ_G0025473.1 mouse_genomes_project 2 53296542 53980588 + MGP_C3HHeJ_P0054497 Galnt13 protein_coding protein_coding MGP_C3HHeJ_T0054498.1 MGP_C3HHeJ_G0025473.1 mouse_genomes_project 2 53296646 53584631 + MGP_C3HHeJ_P0054498 Galnt13 protein_coding protein_coding MGP_C3HHeJ_T0054499.1 MGP_C3HHeJ_G0025473.1 mouse_genomes_project 2 53391545 53975208 + MGP_C3HHeJ_P0054499 Galnt13 protein_coding protein_coding MGP_C3HHeJ_T0003920.1 MGP_C3HHeJ_G0003493.1 mouse_genomes_project 2 66528472 66629464 - Gm13599 antisense antisense MGP_C3HHeJ_T0057987.1 MGP_C3HHeJ_G0026394.1 mouse_genomes_project 2 155818590 155819749 + MGP_C3HHeJ_P0057987 Id1 protein_coding protein_coding MGP_C3HHeJ_T0057988.1 MGP_C3HHeJ_G0026394.1 mouse_genomes_project 2 155818590 155819749 + MGP_C3HHeJ_P0057988 Id1 protein_coding protein_coding MGP_C3HHeJ_T0013436.1 MGP_C3HHeJ_G0011540.1 mouse_genomes_project 2 65630894 65631266 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098389.1 MGP_C3HHeJ_G0036595.1 mouse_genomes_project 2 1089032 1092644 + Gm38085 sense_intronic sense_intronic MGP_C3HHeJ_T0007351.1 MGP_C3HHeJ_G0006025.1 mouse_genomes_project 2 185415711 185490468 - Gm14342 lincRNA lincRNA MGP_C3HHeJ_T0054114.1 MGP_C3HHeJ_G0025388.1 mouse_genomes_project 2 33607687 33632262 - MGP_C3HHeJ_P0054114 4930402F06Rik protein_coding protein_coding MGP_C3HHeJ_T0054115.1 MGP_C3HHeJ_G0025388.1 mouse_genomes_project 2 33607707 33632144 - MGP_C3HHeJ_P0054115 4930402F06Rik protein_coding protein_coding MGP_C3HHeJ_T0058602.1 MGP_C3HHeJ_G0026515.1 mouse_genomes_project 2 162119768 162134470 + Actr5 protein_coding retained_intron MGP_C3HHeJ_T0058603.1 MGP_C3HHeJ_G0026515.1 mouse_genomes_project 2 162119768 162124038 + Actr5 protein_coding retained_intron MGP_C3HHeJ_T0058604.1 MGP_C3HHeJ_G0026515.1 mouse_genomes_project 2 162119768 162134470 + MGP_C3HHeJ_P0058604 Actr5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058605.1 MGP_C3HHeJ_G0026515.1 mouse_genomes_project 2 162119768 162134483 + MGP_C3HHeJ_P0058605 Actr5 protein_coding protein_coding MGP_C3HHeJ_T0058606.1 MGP_C3HHeJ_G0026515.1 mouse_genomes_project 2 162126509 162131969 + Actr5 protein_coding processed_transcript MGP_C3HHeJ_T0003927.1 MGP_C3HHeJ_G0003499.1 mouse_genomes_project 2 69876476 69882185 - Erich2os antisense antisense MGP_C3HHeJ_T0057785.1 MGP_C3HHeJ_G0026321.1 mouse_genomes_project 2 149889864 149891991 - MGP_C3HHeJ_P0057785 Nkx2-4 protein_coding protein_coding MGP_C3HHeJ_T0058263.1 MGP_C3HHeJ_G0026459.1 mouse_genomes_project 2 159027256 159027313 - MGP_C3HHeJ_P0058263 Gm17581 protein_coding protein_coding MGP_C3HHeJ_T0057324.1 MGP_C3HHeJ_G0026222.1 mouse_genomes_project 2 132580752 132582182 + MGP_C3HHeJ_P0057324 Tmem239 protein_coding protein_coding MGP_C3HHeJ_T0058118.1 MGP_C3HHeJ_G0026428.1 mouse_genomes_project 2 157407581 157424665 + MGP_C3HHeJ_P0058118 Bpifb5 protein_coding protein_coding MGP_C3HHeJ_T0017580.1 MGP_C3HHeJ_G0015203.1 mouse_genomes_project 2 91240796 91249939 - Ptpmt1 processed_transcript processed_transcript MGP_C3HHeJ_T0017581.1 MGP_C3HHeJ_G0015203.1 mouse_genomes_project 2 91242793 91250340 - Ptpmt1 processed_transcript processed_transcript MGP_C3HHeJ_T0017582.1 MGP_C3HHeJ_G0015203.1 mouse_genomes_project 2 91242793 91250132 - Ptpmt1 processed_transcript processed_transcript MGP_C3HHeJ_T0017583.1 MGP_C3HHeJ_G0015203.1 mouse_genomes_project 2 91243074 91249677 - Ptpmt1 processed_transcript processed_transcript MGP_C3HHeJ_T0017584.1 MGP_C3HHeJ_G0015203.1 mouse_genomes_project 2 91246118 91249750 - Ptpmt1 processed_transcript processed_transcript MGP_C3HHeJ_T0053560.1 MGP_C3HHeJ_G0025305.1 mouse_genomes_project 2 28426227 28428908 - MGP_C3HHeJ_P0053560 Ier5l protein_coding protein_coding MGP_C3HHeJ_T0099218.1 MGP_C3HHeJ_G0037412.1 mouse_genomes_project 2 135632898 135632957 + Gm27449 snRNA snRNA MGP_C3HHeJ_T0058111.1 MGP_C3HHeJ_G0026425.1 mouse_genomes_project 2 157332667 157338990 + MGP_C3HHeJ_P0058111 Bpifa1 protein_coding protein_coding MGP_C3HHeJ_T0058112.1 MGP_C3HHeJ_G0026425.1 mouse_genomes_project 2 157332686 157334945 + Bpifa1 protein_coding processed_transcript MGP_C3HHeJ_T0058113.1 MGP_C3HHeJ_G0026425.1 mouse_genomes_project 2 157334118 157337516 + Bpifa1 protein_coding processed_transcript MGP_C3HHeJ_T0013348.1 MGP_C3HHeJ_G0011452.1 mouse_genomes_project 2 33733369 33733676 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017538.1 MGP_C3HHeJ_G0015173.1 mouse_genomes_project 2 28682583 28690457 - Gm14488 processed_transcript processed_transcript MGP_C3HHeJ_T0017539.1 MGP_C3HHeJ_G0015173.1 mouse_genomes_project 2 28682586 28687528 - Gm14488 processed_transcript retained_intron MGP_C3HHeJ_T0055607.1 MGP_C3HHeJ_G0025832.1 mouse_genomes_project 2 89984346 89985596 - MGP_C3HHeJ_P0055607 protein_coding protein_coding MGP_C3HHeJ_T0053455.1 MGP_C3HHeJ_G0025291.1 mouse_genomes_project 2 28112635 28115212 + MGP_C3HHeJ_P0053455 Endog protein_coding protein_coding MGP_C3HHeJ_T0055532.1 MGP_C3HHeJ_G0025770.1 mouse_genomes_project 2 88149795 88150740 - MGP_C3HHeJ_P0055532 Olfr1162 protein_coding protein_coding MGP_C3HHeJ_T0055533.1 MGP_C3HHeJ_G0025770.1 mouse_genomes_project 2 88149795 88151230 - MGP_C3HHeJ_P0055533 Olfr1162 protein_coding protein_coding MGP_C3HHeJ_T0004036.1 MGP_C3HHeJ_G0003569.1 mouse_genomes_project 2 145570274 145570882 + Kif16bos antisense antisense MGP_C3HHeJ_T0059408.1 MGP_C3HHeJ_G0026721.1 mouse_genomes_project 2 185530611 185535596 + Birc7 protein_coding retained_intron MGP_C3HHeJ_T0059409.1 MGP_C3HHeJ_G0026721.1 mouse_genomes_project 2 185530611 185535599 + MGP_C3HHeJ_P0059409 Birc7 protein_coding protein_coding MGP_C3HHeJ_T0010260.1 MGP_C3HHeJ_G0008393.1 mouse_genomes_project 2 7694622 7694703 + Mir669d-2 miRNA miRNA MGP_C3HHeJ_T0003854.1 MGP_C3HHeJ_G0003443.1 mouse_genomes_project 2 24120274 24126007 + Gm13563 antisense antisense MGP_C3HHeJ_T0003855.1 MGP_C3HHeJ_G0003443.1 mouse_genomes_project 2 24124300 24126543 + Gm13563 antisense antisense MGP_C3HHeJ_T0003856.1 MGP_C3HHeJ_G0003443.1 mouse_genomes_project 2 24126205 24127767 + Gm13563 antisense antisense MGP_C3HHeJ_T0007301.1 MGP_C3HHeJ_G0005982.1 mouse_genomes_project 2 168278362 168288730 + Gm14317 lincRNA lincRNA MGP_C3HHeJ_T0055529.1 MGP_C3HHeJ_G0025767.1 mouse_genomes_project 2 88105123 88106970 - MGP_C3HHeJ_P0055529 protein_coding protein_coding MGP_C3HHeJ_T0053563.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28769705 28778571 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053564.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28770237 28776643 - MGP_C3HHeJ_P0053564 1700001O22Rik protein_coding protein_coding MGP_C3HHeJ_T0053565.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28770404 28771601 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053566.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28770499 28778597 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053567.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28770502 28778580 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053568.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28770509 28775937 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053569.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28770516 28778593 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053570.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28770540 28778579 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053571.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28770593 28778580 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053572.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28770610 28771812 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053573.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28771044 28778580 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053574.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28771118 28778580 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053575.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28772189 28778559 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0003991.1 MGP_C3HHeJ_G0003536.1 mouse_genomes_project 2 116902544 116928893 - Gm13977 antisense antisense MGP_C3HHeJ_T0054191.1 MGP_C3HHeJ_G0025419.1 mouse_genomes_project 2 35359046 35362558 + MGP_C3HHeJ_P0054191 Olfr360 protein_coding protein_coding MGP_C3HHeJ_T0054192.1 MGP_C3HHeJ_G0025419.1 mouse_genomes_project 2 35361604 35362558 + MGP_C3HHeJ_P0054192 Olfr360 protein_coding protein_coding MGP_C3HHeJ_T0007146.1 MGP_C3HHeJ_G0005855.1 mouse_genomes_project 2 73418681 73427960 + Gm10822 lincRNA lincRNA MGP_C3HHeJ_T0056941.1 MGP_C3HHeJ_G0026125.1 mouse_genomes_project 2 123867796 123873187 + MGP_C3HHeJ_P0056941 B2m protein_coding protein_coding MGP_C3HHeJ_T0054770.1 MGP_C3HHeJ_G0025518.1 mouse_genomes_project 2 65870363 65983133 - MGP_C3HHeJ_P0054770 Scn7a protein_coding protein_coding MGP_C3HHeJ_T0058700.1 MGP_C3HHeJ_G0026535.1 mouse_genomes_project 2 166743516 166744338 - MGP_C3HHeJ_P0058700 Gtsf1l protein_coding protein_coding MGP_C3HHeJ_T0011396.1 MGP_C3HHeJ_G0009529.1 mouse_genomes_project 2 22223896 22224221 + Gm25455 misc_RNA misc_RNA MGP_C3HHeJ_T0013574.1 MGP_C3HHeJ_G0011678.1 mouse_genomes_project 2 112851382 112851538 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053691.1 MGP_C3HHeJ_G0025325.1 mouse_genomes_project 2 29843365 29848967 - MGP_C3HHeJ_P0053691 Qrfp protein_coding protein_coding MGP_C3HHeJ_T0052629.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22410864 22518111 - MGP_C3HHeJ_P0052629 Ehmt1 protein_coding protein_coding MGP_C3HHeJ_T0052630.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22411212 22548235 - MGP_C3HHeJ_P0052630 Ehmt1 protein_coding protein_coding MGP_C3HHeJ_T0052631.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22411212 22426423 - MGP_C3HHeJ_P0052631 Ehmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052632.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22411212 22548235 - MGP_C3HHeJ_P0052632 Ehmt1 protein_coding protein_coding MGP_C3HHeJ_T0052633.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22412019 22548277 - MGP_C3HHeJ_P0052633 Ehmt1 protein_coding protein_coding MGP_C3HHeJ_T0052634.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22425300 22445241 - Ehmt1 protein_coding retained_intron MGP_C3HHeJ_T0052635.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22426337 22463844 - MGP_C3HHeJ_P0052635 Ehmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052636.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22426395 22427350 - Ehmt1 protein_coding processed_transcript MGP_C3HHeJ_T0052637.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22443177 22548251 - MGP_C3HHeJ_P0052637 Ehmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052638.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22444821 22478996 - MGP_C3HHeJ_P0052638 Ehmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052639.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22459354 22548240 - Ehmt1 protein_coding retained_intron MGP_C3HHeJ_T0052640.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22472279 22503959 - MGP_C3HHeJ_P0052640 Ehmt1 protein_coding protein_coding MGP_C3HHeJ_T0052641.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22489642 22510791 - MGP_C3HHeJ_P0052641 Ehmt1 protein_coding protein_coding MGP_C3HHeJ_T0052642.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22489711 22548268 - MGP_C3HHeJ_P0052642 Ehmt1 protein_coding protein_coding MGP_C3HHeJ_T0052643.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22490308 22548259 - MGP_C3HHeJ_P0052643 Ehmt1 protein_coding protein_coding MGP_C3HHeJ_T0056271.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110629213 110682570 + MGP_C3HHeJ_P0056271 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056272.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110630410 110682570 + MGP_C3HHeJ_P0056272 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056273.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110630410 110682570 + MGP_C3HHeJ_P0056273 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056274.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110630410 110682570 + MGP_C3HHeJ_P0056274 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056275.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110631545 110682570 + MGP_C3HHeJ_P0056275 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056276.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110646986 110682570 + MGP_C3HHeJ_P0056276 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056277.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110647576 110682570 + MGP_C3HHeJ_P0056277 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056278.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110648092 110682570 + MGP_C3HHeJ_P0056278 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056279.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110648938 110682570 + MGP_C3HHeJ_P0056279 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056280.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110648998 110682570 + MGP_C3HHeJ_P0056280 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056281.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110664873 110682570 + MGP_C3HHeJ_P0056281 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0055485.1 MGP_C3HHeJ_G0025733.1 mouse_genomes_project 2 87449721 87450702 + MGP_C3HHeJ_P0055485 Olfr1122 protein_coding protein_coding MGP_C3HHeJ_T0057902.1 MGP_C3HHeJ_G0026359.1 mouse_genomes_project 2 154610969 154628348 + MGP_C3HHeJ_P0057902 Sdcbp2 protein_coding protein_coding MGP_C3HHeJ_T0055534.1 MGP_C3HHeJ_G0025771.1 mouse_genomes_project 2 88171028 88171979 - MGP_C3HHeJ_P0055534 Olfr1163 protein_coding protein_coding MGP_C3HHeJ_T0013376.1 MGP_C3HHeJ_G0011480.1 mouse_genomes_project 2 43854144 43854378 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010280.1 MGP_C3HHeJ_G0008413.1 mouse_genomes_project 2 7717504 7717584 + Mir466g miRNA miRNA MGP_C3HHeJ_T0057965.1 MGP_C3HHeJ_G0026380.1 mouse_genomes_project 2 155549754 155552626 + MGP_C3HHeJ_P0057965 Defb20 protein_coding protein_coding MGP_C3HHeJ_T0013271.1 MGP_C3HHeJ_G0011375.1 mouse_genomes_project 2 2188169 2188995 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003888.1 MGP_C3HHeJ_G0003468.1 mouse_genomes_project 2 32475504 32492585 + C79798 antisense antisense MGP_C3HHeJ_T0013267.1 MGP_C3HHeJ_G0011371.1 mouse_genomes_project 2 1063718 1064282 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053534.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28351477 28366764 - MGP_C3HHeJ_P0053534 Crat protein_coding protein_coding MGP_C3HHeJ_T0053535.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28351482 28357691 - Crat protein_coding processed_transcript MGP_C3HHeJ_T0053536.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28352107 28366806 - MGP_C3HHeJ_P0053536 Crat protein_coding protein_coding MGP_C3HHeJ_T0053537.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28353504 28356299 - MGP_C3HHeJ_P0053537 Crat protein_coding protein_coding MGP_C3HHeJ_T0053538.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28353584 28366517 - MGP_C3HHeJ_P0053538 Crat protein_coding protein_coding MGP_C3HHeJ_T0053539.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28353643 28355972 - MGP_C3HHeJ_P0053539 Crat protein_coding protein_coding MGP_C3HHeJ_T0053540.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28359094 28366301 - MGP_C3HHeJ_P0053540 Crat protein_coding protein_coding MGP_C3HHeJ_T0053541.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28359139 28366541 - MGP_C3HHeJ_P0053541 Crat protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053542.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28364041 28365332 - Crat protein_coding processed_transcript MGP_C3HHeJ_T0053543.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28364137 28366511 - MGP_C3HHeJ_P0053543 Crat protein_coding protein_coding MGP_C3HHeJ_T0053544.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28364158 28366326 - MGP_C3HHeJ_P0053544 Crat protein_coding protein_coding MGP_C3HHeJ_T0053545.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28365052 28366593 - Crat protein_coding processed_transcript MGP_C3HHeJ_T0053546.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28365587 28366400 - MGP_C3HHeJ_P0053546 Crat protein_coding protein_coding MGP_C3HHeJ_T0013665.1 MGP_C3HHeJ_G0011769.1 mouse_genomes_project 2 153320752 153321147 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017658.1 MGP_C3HHeJ_G0015237.1 mouse_genomes_project 2 141751075 142221905 - processed_transcript processed_transcript MGP_C3HHeJ_T0013297.1 MGP_C3HHeJ_G0011401.1 mouse_genomes_project 2 15219735 15220886 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055556.1 MGP_C3HHeJ_G0025792.1 mouse_genomes_project 2 88916538 88918922 + MGP_C3HHeJ_P0055556 Olfr1201 protein_coding protein_coding MGP_C3HHeJ_T0055617.1 MGP_C3HHeJ_G0025839.1 mouse_genomes_project 2 90154461 90157891 + MGP_C3HHeJ_P0055617 Olfr1258 protein_coding protein_coding MGP_C3HHeJ_T0055618.1 MGP_C3HHeJ_G0025839.1 mouse_genomes_project 2 90156955 90157891 + MGP_C3HHeJ_P0055618 Olfr1258 protein_coding protein_coding MGP_C3HHeJ_T0053137.1 MGP_C3HHeJ_G0025237.1 mouse_genomes_project 2 24680874 24690147 + MGP_C3HHeJ_P0053137 Stkld1 protein_coding protein_coding MGP_C3HHeJ_T0053138.1 MGP_C3HHeJ_G0025237.1 mouse_genomes_project 2 24680896 24705265 + MGP_C3HHeJ_P0053138 Stkld1 protein_coding protein_coding MGP_C3HHeJ_T0053139.1 MGP_C3HHeJ_G0025237.1 mouse_genomes_project 2 24682150 24705160 + MGP_C3HHeJ_P0053139 Stkld1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0013278.1 MGP_C3HHeJ_G0011382.1 mouse_genomes_project 2 8119069 8119880 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054307.1 MGP_C3HHeJ_G0025445.1 mouse_genomes_project 2 37555925 37589118 - MGP_C3HHeJ_P0054307 Ppp6c protein_coding protein_coding MGP_C3HHeJ_T0054308.1 MGP_C3HHeJ_G0025445.1 mouse_genomes_project 2 37558305 37588949 - MGP_C3HHeJ_P0054308 Ppp6c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054309.1 MGP_C3HHeJ_G0025445.1 mouse_genomes_project 2 37558348 37588987 - MGP_C3HHeJ_P0054309 Ppp6c protein_coding protein_coding MGP_C3HHeJ_T0054310.1 MGP_C3HHeJ_G0025445.1 mouse_genomes_project 2 37559068 37562562 - Ppp6c protein_coding processed_transcript MGP_C3HHeJ_T0057445.1 MGP_C3HHeJ_G0026248.1 mouse_genomes_project 2 133480242 133501637 + Pank2 protein_coding processed_transcript MGP_C3HHeJ_T0057446.1 MGP_C3HHeJ_G0026248.1 mouse_genomes_project 2 133480247 133518239 + MGP_C3HHeJ_P0057446 Pank2 protein_coding protein_coding MGP_C3HHeJ_T0057447.1 MGP_C3HHeJ_G0026248.1 mouse_genomes_project 2 133480272 133515124 + MGP_C3HHeJ_P0057447 Pank2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057448.1 MGP_C3HHeJ_G0026248.1 mouse_genomes_project 2 133480315 133518237 + MGP_C3HHeJ_P0057448 Pank2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057449.1 MGP_C3HHeJ_G0026248.1 mouse_genomes_project 2 133480543 133514967 + MGP_C3HHeJ_P0057449 Pank2 protein_coding protein_coding MGP_C3HHeJ_T0057450.1 MGP_C3HHeJ_G0026248.1 mouse_genomes_project 2 133480586 133515327 + Pank2 protein_coding processed_transcript MGP_C3HHeJ_T0057451.1 MGP_C3HHeJ_G0026248.1 mouse_genomes_project 2 133492278 133512157 + MGP_C3HHeJ_P0057451 Pank2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057452.1 MGP_C3HHeJ_G0026248.1 mouse_genomes_project 2 133492386 133514944 + MGP_C3HHeJ_P0057452 Pank2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0003829.1 MGP_C3HHeJ_G0003423.1 mouse_genomes_project 2 11019448 11021367 + Gm37126 antisense antisense MGP_C3HHeJ_T0007191.1 MGP_C3HHeJ_G0005892.1 mouse_genomes_project 2 99964179 99964664 - Gm29235 lincRNA lincRNA MGP_C3HHeJ_T0055996.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94465743 94469894 - Alkbh3 protein_coding processed_transcript MGP_C3HHeJ_T0055997.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94465743 94469925 - Alkbh3 protein_coding processed_transcript MGP_C3HHeJ_T0055998.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94465743 94496746 - MGP_C3HHeJ_P0055998 Alkbh3 protein_coding protein_coding MGP_C3HHeJ_T0055999.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94465822 94466820 - Alkbh3 protein_coding processed_transcript MGP_C3HHeJ_T0056000.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94465830 94496669 - MGP_C3HHeJ_P0056000 Alkbh3 protein_coding protein_coding MGP_C3HHeJ_T0056001.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94481278 94496370 - Alkbh3 protein_coding processed_transcript MGP_C3HHeJ_T0056002.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94481347 94490237 - Alkbh3 protein_coding processed_transcript MGP_C3HHeJ_T0056003.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94481347 94496693 - MGP_C3HHeJ_P0056003 Alkbh3 protein_coding protein_coding MGP_C3HHeJ_T0056004.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94490823 94496693 - Alkbh3 protein_coding processed_transcript MGP_C3HHeJ_T0056005.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94491293 94496691 - Alkbh3 protein_coding processed_transcript MGP_C3HHeJ_T0056006.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94493086 94496691 - Alkbh3 protein_coding processed_transcript MGP_C3HHeJ_T0010375.1 MGP_C3HHeJ_G0008508.1 mouse_genomes_project 2 133506804 133506890 + Mir103-2 miRNA miRNA MGP_C3HHeJ_T0017700.1 MGP_C3HHeJ_G0015257.1 mouse_genomes_project 2 176637507 176654677 - Gm14455 processed_transcript processed_transcript MGP_C3HHeJ_T0007114.1 MGP_C3HHeJ_G0005828.1 mouse_genomes_project 2 48475004 48481965 - Gm13480 lincRNA lincRNA MGP_C3HHeJ_T0056661.1 MGP_C3HHeJ_G0026083.1 mouse_genomes_project 2 121885847 121898252 - Pla2g4f protein_coding retained_intron MGP_C3HHeJ_T0056662.1 MGP_C3HHeJ_G0026083.1 mouse_genomes_project 2 121885856 121900057 - MGP_C3HHeJ_P0056662 Pla2g4f protein_coding protein_coding MGP_C3HHeJ_T0010295.1 MGP_C3HHeJ_G0008428.1 mouse_genomes_project 2 22567271 22567397 + Gm22875 miRNA miRNA MGP_C3HHeJ_T0010314.1 MGP_C3HHeJ_G0008447.1 mouse_genomes_project 2 30405496 30405575 + Gm23363 miRNA miRNA MGP_C3HHeJ_T0007072.1 MGP_C3HHeJ_G0005797.1 mouse_genomes_project 2 22768542 22792846 - Gm13387 lincRNA lincRNA MGP_C3HHeJ_T0007073.1 MGP_C3HHeJ_G0005797.1 mouse_genomes_project 2 22788472 22792846 - Gm13387 lincRNA lincRNA MGP_C3HHeJ_T0007074.1 MGP_C3HHeJ_G0005797.1 mouse_genomes_project 2 22791266 22792773 - Gm13387 lincRNA lincRNA MGP_C3HHeJ_T0010351.1 MGP_C3HHeJ_G0008484.1 mouse_genomes_project 2 94726247 94726337 - Mir129-2 miRNA miRNA MGP_C3HHeJ_T0100515.1 MGP_C3HHeJ_G0038709.1 mouse_genomes_project 2 172325473 172325610 + Gm22704 snoRNA snoRNA MGP_C3HHeJ_T0017572.1 MGP_C3HHeJ_G0015196.1 mouse_genomes_project 2 83526649 83550508 - Gm13684 processed_transcript processed_transcript MGP_C3HHeJ_T0055348.1 MGP_C3HHeJ_G0025639.1 mouse_genomes_project 2 84488392 84489879 - MGP_C3HHeJ_P0055348 Gm19426 protein_coding protein_coding MGP_C3HHeJ_T0059530.1 MGP_C3HHeJ_G0026740.1 mouse_genomes_project 2 185994826 186071106 - MGP_C3HHeJ_P0059530 Zbtb46 protein_coding protein_coding MGP_C3HHeJ_T0059531.1 MGP_C3HHeJ_G0026740.1 mouse_genomes_project 2 185997950 186032272 - MGP_C3HHeJ_P0059531 Zbtb46 protein_coding protein_coding MGP_C3HHeJ_T0059532.1 MGP_C3HHeJ_G0026740.1 mouse_genomes_project 2 186018450 186071106 - MGP_C3HHeJ_P0059532 Zbtb46 protein_coding protein_coding MGP_C3HHeJ_T0059533.1 MGP_C3HHeJ_G0026740.1 mouse_genomes_project 2 186029421 186071106 - Zbtb46 protein_coding retained_intron MGP_C3HHeJ_T0059534.1 MGP_C3HHeJ_G0026740.1 mouse_genomes_project 2 186032111 186071059 - MGP_C3HHeJ_P0059534 Zbtb46 protein_coding protein_coding MGP_C3HHeJ_T0017612.1 MGP_C3HHeJ_G0015218.1 mouse_genomes_project 2 115283970 115298406 + A530058N18Rik processed_transcript antisense MGP_C3HHeJ_T0017613.1 MGP_C3HHeJ_G0015218.1 mouse_genomes_project 2 115284078 115303602 + A530058N18Rik processed_transcript antisense MGP_C3HHeJ_T0017614.1 MGP_C3HHeJ_G0015218.1 mouse_genomes_project 2 115284079 115302894 + A530058N18Rik processed_transcript antisense MGP_C3HHeJ_T0017615.1 MGP_C3HHeJ_G0015218.1 mouse_genomes_project 2 115284081 115303415 + A530058N18Rik processed_transcript antisense MGP_C3HHeJ_T0017616.1 MGP_C3HHeJ_G0015218.1 mouse_genomes_project 2 115284094 115291039 + A530058N18Rik processed_transcript retained_intron MGP_C3HHeJ_T0017617.1 MGP_C3HHeJ_G0015218.1 mouse_genomes_project 2 115284112 115287881 + A530058N18Rik processed_transcript antisense MGP_C3HHeJ_T0017618.1 MGP_C3HHeJ_G0015218.1 mouse_genomes_project 2 115284113 115302762 + A530058N18Rik processed_transcript antisense MGP_C3HHeJ_T0056350.1 MGP_C3HHeJ_G0026007.1 mouse_genomes_project 2 113494868 113638456 + MGP_C3HHeJ_P0056350 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007148.1 MGP_C3HHeJ_G0005857.1 mouse_genomes_project 2 73666552 73667102 + Gm28640 lincRNA lincRNA MGP_C3HHeJ_T0017590.1 MGP_C3HHeJ_G0015208.1 mouse_genomes_project 2 93481167 93488867 + 4631405J19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017591.1 MGP_C3HHeJ_G0015208.1 mouse_genomes_project 2 93481167 93488867 + 4631405J19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017592.1 MGP_C3HHeJ_G0015208.1 mouse_genomes_project 2 93482559 93488894 + 4631405J19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017593.1 MGP_C3HHeJ_G0015208.1 mouse_genomes_project 2 93482560 93487165 + 4631405J19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017594.1 MGP_C3HHeJ_G0015208.1 mouse_genomes_project 2 93485899 93501813 + 4631405J19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0053720.1 MGP_C3HHeJ_G0025331.1 mouse_genomes_project 2 30156885 30173512 + MGP_C3HHeJ_P0053720 Plpp7 protein_coding protein_coding MGP_C3HHeJ_T0053721.1 MGP_C3HHeJ_G0025331.1 mouse_genomes_project 2 30156922 30172818 + MGP_C3HHeJ_P0053721 Plpp7 protein_coding protein_coding MGP_C3HHeJ_T0053722.1 MGP_C3HHeJ_G0025331.1 mouse_genomes_project 2 30157512 30173500 + MGP_C3HHeJ_P0053722 Plpp7 protein_coding protein_coding MGP_C3HHeJ_T0003838.1 MGP_C3HHeJ_G0003431.1 mouse_genomes_project 2 17838406 17858040 - Gm17171 antisense antisense MGP_C3HHeJ_T0001006.1 MGP_C3HHeJ_G0000943.1 mouse_genomes_project 2 10328338 10330939 + TEC TEC MGP_C3HHeJ_T0017654.1 MGP_C3HHeJ_G0015235.1 mouse_genomes_project 2 133517180 133518886 + Gm14233 processed_transcript processed_transcript MGP_C3HHeJ_T0007212.1 MGP_C3HHeJ_G0005910.1 mouse_genomes_project 2 116473891 116476128 + Gm28493 lincRNA lincRNA MGP_C3HHeJ_T0059156.1 MGP_C3HHeJ_G0026650.1 mouse_genomes_project 2 173712485 174004493 + MGP_C3HHeJ_P0059156 Tshz2 protein_coding protein_coding MGP_C3HHeJ_T0059157.1 MGP_C3HHeJ_G0026650.1 mouse_genomes_project 2 173713142 173977632 + MGP_C3HHeJ_P0059157 Tshz2 protein_coding protein_coding MGP_C3HHeJ_T0059158.1 MGP_C3HHeJ_G0026650.1 mouse_genomes_project 2 173974021 174168354 + MGP_C3HHeJ_P0059158 Tshz2 protein_coding protein_coding MGP_C3HHeJ_T0059159.1 MGP_C3HHeJ_G0026650.1 mouse_genomes_project 2 173974021 174168354 + MGP_C3HHeJ_P0059159 Tshz2 protein_coding protein_coding MGP_C3HHeJ_T0059160.1 MGP_C3HHeJ_G0026650.1 mouse_genomes_project 2 173974963 174004493 + MGP_C3HHeJ_P0059160 Tshz2 protein_coding protein_coding MGP_C3HHeJ_T0011401.1 MGP_C3HHeJ_G0009534.1 mouse_genomes_project 2 43630205 43630266 + Gm27676 misc_RNA misc_RNA MGP_C3HHeJ_T0057188.1 MGP_C3HHeJ_G0026186.1 mouse_genomes_project 2 129825006 129874898 - MGP_C3HHeJ_P0057188 Nphp1 protein_coding protein_coding MGP_C3HHeJ_T0057189.1 MGP_C3HHeJ_G0026186.1 mouse_genomes_project 2 129825008 129828939 - Nphp1 protein_coding processed_transcript MGP_C3HHeJ_T0057190.1 MGP_C3HHeJ_G0026186.1 mouse_genomes_project 2 129825010 129874941 - MGP_C3HHeJ_P0057190 Nphp1 protein_coding protein_coding MGP_C3HHeJ_T0057191.1 MGP_C3HHeJ_G0026186.1 mouse_genomes_project 2 129830020 129838328 - Nphp1 protein_coding retained_intron MGP_C3HHeJ_T0013481.1 MGP_C3HHeJ_G0011585.1 mouse_genomes_project 2 80649387 80651393 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054197.1 MGP_C3HHeJ_G0025424.1 mouse_genomes_project 2 35619656 35620640 + MGP_C3HHeJ_P0054197 Olfr368 protein_coding protein_coding MGP_C3HHeJ_T0010286.1 MGP_C3HHeJ_G0008419.1 mouse_genomes_project 2 7720495 7720622 + Mir669i miRNA miRNA MGP_C3HHeJ_T0058187.1 MGP_C3HHeJ_G0026446.1 mouse_genomes_project 2 158322032 158337015 - MGP_C3HHeJ_P0058187 protein_coding protein_coding MGP_C3HHeJ_T0058188.1 MGP_C3HHeJ_G0026446.1 mouse_genomes_project 2 158328311 158336965 - MGP_C3HHeJ_P0058188 protein_coding protein_coding MGP_C3HHeJ_T0058189.1 MGP_C3HHeJ_G0026446.1 mouse_genomes_project 2 158331105 158336965 - protein_coding retained_intron MGP_C3HHeJ_T0053166.1 MGP_C3HHeJ_G0025242.1 mouse_genomes_project 2 24815353 24826514 - MGP_C3HHeJ_P0053166 Tmem8c protein_coding protein_coding MGP_C3HHeJ_T0053167.1 MGP_C3HHeJ_G0025242.1 mouse_genomes_project 2 24815355 24822203 - MGP_C3HHeJ_P0053167 Tmem8c protein_coding protein_coding MGP_C3HHeJ_T0013474.1 MGP_C3HHeJ_G0011578.1 mouse_genomes_project 2 78707593 78707795 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001030.1 MGP_C3HHeJ_G0000967.1 mouse_genomes_project 2 31122220 31127422 - TEC TEC MGP_C3HHeJ_T0055477.1 MGP_C3HHeJ_G0025725.1 mouse_genomes_project 2 87133799 87134738 - MGP_C3HHeJ_P0055477 Olfr1110 protein_coding protein_coding MGP_C3HHeJ_T0057224.1 MGP_C3HHeJ_G0026194.1 mouse_genomes_project 2 130812955 130916717 + MGP_C3HHeJ_P0057224 Mertk protein_coding protein_coding MGP_C3HHeJ_T0057225.1 MGP_C3HHeJ_G0026194.1 mouse_genomes_project 2 130886646 130916506 + Mertk protein_coding processed_transcript MGP_C3HHeJ_T0007342.1 MGP_C3HHeJ_G0006016.1 mouse_genomes_project 2 176166821 176167822 - Gm14272 lincRNA lincRNA MGP_C3HHeJ_T0055453.1 MGP_C3HHeJ_G0025703.1 mouse_genomes_project 2 86430553 86431501 - MGP_C3HHeJ_P0055453 Olfr1079 protein_coding protein_coding MGP_C3HHeJ_T0055454.1 MGP_C3HHeJ_G0025703.1 mouse_genomes_project 2 86430553 86435084 - MGP_C3HHeJ_P0055454 Olfr1079 protein_coding protein_coding MGP_C3HHeJ_T0052808.1 MGP_C3HHeJ_G0025176.1 mouse_genomes_project 2 23037207 23043100 + MGP_C3HHeJ_P0052808 Sapcd2 protein_coding protein_coding MGP_C3HHeJ_T0052809.1 MGP_C3HHeJ_G0025176.1 mouse_genomes_project 2 23037216 23041690 + MGP_C3HHeJ_P0052809 Sapcd2 protein_coding protein_coding MGP_C3HHeJ_T0052810.1 MGP_C3HHeJ_G0025176.1 mouse_genomes_project 2 23037220 23041690 + MGP_C3HHeJ_P0052810 Sapcd2 protein_coding protein_coding MGP_C3HHeJ_T0052811.1 MGP_C3HHeJ_G0025176.1 mouse_genomes_project 2 23037246 23040029 + Sapcd2 protein_coding processed_transcript MGP_C3HHeJ_T0052812.1 MGP_C3HHeJ_G0025176.1 mouse_genomes_project 2 23039907 23041159 + Sapcd2 protein_coding processed_transcript MGP_C3HHeJ_T0052813.1 MGP_C3HHeJ_G0025176.1 mouse_genomes_project 2 23040660 23041664 + Sapcd2 protein_coding processed_transcript MGP_C3HHeJ_T0052814.1 MGP_C3HHeJ_G0025176.1 mouse_genomes_project 2 23040846 23041687 + Sapcd2 protein_coding processed_transcript MGP_C3HHeJ_T0058623.1 MGP_C3HHeJ_G0026519.1 mouse_genomes_project 2 163875450 163877679 - MGP_C3HHeJ_P0058623 Gm826 protein_coding protein_coding MGP_C3HHeJ_T0058624.1 MGP_C3HHeJ_G0026519.1 mouse_genomes_project 2 163875801 163898132 - Gm826 protein_coding processed_transcript MGP_C3HHeJ_T0058625.1 MGP_C3HHeJ_G0026519.1 mouse_genomes_project 2 163875918 163891468 - MGP_C3HHeJ_P0058625 Gm826 protein_coding protein_coding MGP_C3HHeJ_T0101880.1 MGP_C3HHeJ_G0039845.1 mouse_genomes_project 2 34810071 34810374 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100429.1 MGP_C3HHeJ_G0038623.1 mouse_genomes_project 2 8238409 8238538 - Gm23877 snoRNA snoRNA MGP_C3HHeJ_T0003849.1 MGP_C3HHeJ_G0003439.1 mouse_genomes_project 2 23397083 23400950 - A230005M16Rik antisense antisense MGP_C3HHeJ_T0003850.1 MGP_C3HHeJ_G0003439.1 mouse_genomes_project 2 23397740 23399499 - A230005M16Rik antisense antisense MGP_C3HHeJ_T0052572.1 MGP_C3HHeJ_G0025132.1 mouse_genomes_project 2 20743710 20809833 + MGP_C3HHeJ_P0052572 4931423N10Rik protein_coding protein_coding MGP_C3HHeJ_T0052573.1 MGP_C3HHeJ_G0025132.1 mouse_genomes_project 2 20743731 20807336 + MGP_C3HHeJ_P0052573 4931423N10Rik protein_coding protein_coding MGP_C3HHeJ_T0057106.1 MGP_C3HHeJ_G0026166.1 mouse_genomes_project 2 129065117 129093570 + Ap4e1 protein_coding retained_intron MGP_C3HHeJ_T0057107.1 MGP_C3HHeJ_G0026166.1 mouse_genomes_project 2 129065121 129069953 + Ap4e1 protein_coding retained_intron MGP_C3HHeJ_T0057108.1 MGP_C3HHeJ_G0026166.1 mouse_genomes_project 2 129065124 129102091 + MGP_C3HHeJ_P0057108 Ap4e1 protein_coding protein_coding MGP_C3HHeJ_T0057109.1 MGP_C3HHeJ_G0026166.1 mouse_genomes_project 2 129065130 129126432 + MGP_C3HHeJ_P0057109 Ap4e1 protein_coding protein_coding MGP_C3HHeJ_T0057110.1 MGP_C3HHeJ_G0026166.1 mouse_genomes_project 2 129065152 129084995 + MGP_C3HHeJ_P0057110 Ap4e1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057111.1 MGP_C3HHeJ_G0026166.1 mouse_genomes_project 2 129065154 129119058 + MGP_C3HHeJ_P0057111 Ap4e1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057112.1 MGP_C3HHeJ_G0026166.1 mouse_genomes_project 2 129065154 129104448 + MGP_C3HHeJ_P0057112 Ap4e1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057113.1 MGP_C3HHeJ_G0026166.1 mouse_genomes_project 2 129106612 129118887 + MGP_C3HHeJ_P0057113 Ap4e1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098284.1 MGP_C3HHeJ_G0036496.1 mouse_genomes_project 2 160335882 160336018 - Gm27653 scaRNA scaRNA MGP_C3HHeJ_T0055401.1 MGP_C3HHeJ_G0025653.1 mouse_genomes_project 2 84904773 84942633 - MGP_C3HHeJ_P0055401 Lrrc55 protein_coding protein_coding MGP_C3HHeJ_T0055402.1 MGP_C3HHeJ_G0025653.1 mouse_genomes_project 2 84934004 84942633 - MGP_C3HHeJ_P0055402 Lrrc55 protein_coding protein_coding MGP_C3HHeJ_T0057722.1 MGP_C3HHeJ_G0026309.1 mouse_genomes_project 2 147321928 147323241 + MGP_C3HHeJ_P0057722 Gm561 protein_coding protein_coding MGP_C3HHeJ_T0055600.1 MGP_C3HHeJ_G0025827.1 mouse_genomes_project 2 89735951 89736875 - MGP_C3HHeJ_P0055600 Olfr1245 protein_coding protein_coding MGP_C3HHeJ_T0099232.1 MGP_C3HHeJ_G0037426.1 mouse_genomes_project 2 185784407 185784511 + Gm24892 snRNA snRNA MGP_C3HHeJ_T0010319.1 MGP_C3HHeJ_G0008452.1 mouse_genomes_project 2 30820776 30820858 - Mir2861 miRNA miRNA MGP_C3HHeJ_T0003999.1 MGP_C3HHeJ_G0003544.1 mouse_genomes_project 2 123561214 123562152 - Gm14019 antisense antisense MGP_C3HHeJ_T0055062.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74048205 74107177 - MGP_C3HHeJ_P0055062 Lnpk1 protein_coding protein_coding MGP_C3HHeJ_T0055063.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74048248 74107177 - MGP_C3HHeJ_P0055063 Lnpk1 protein_coding protein_coding MGP_C3HHeJ_T0055064.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74048255 74061014 - Lnpk1 protein_coding processed_transcript MGP_C3HHeJ_T0055065.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74049247 74107160 - Lnpk1 protein_coding processed_transcript MGP_C3HHeJ_T0055066.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74049955 74106452 - MGP_C3HHeJ_P0055066 Lnpk1 protein_coding protein_coding MGP_C3HHeJ_T0055067.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74059816 74107608 - MGP_C3HHeJ_P0055067 Lnpk1 protein_coding protein_coding MGP_C3HHeJ_T0055068.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74065285 74106746 - MGP_C3HHeJ_P0055068 Lnpk1 protein_coding protein_coding MGP_C3HHeJ_T0055069.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74075269 74082887 - Lnpk1 protein_coding processed_transcript MGP_C3HHeJ_T0055070.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74075895 74107664 - Lnpk1 protein_coding processed_transcript MGP_C3HHeJ_T0055071.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74078945 74079785 - Lnpk1 protein_coding processed_transcript MGP_C3HHeJ_T0055072.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74079238 74107145 - Lnpk1 protein_coding processed_transcript MGP_C3HHeJ_T0055073.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74097032 74107109 - Lnpk1 protein_coding processed_transcript MGP_C3HHeJ_T0055074.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74097297 74107123 - MGP_C3HHeJ_P0055074 Lnpk1 protein_coding protein_coding MGP_C3HHeJ_T0057312.1 MGP_C3HHeJ_G0026218.1 mouse_genomes_project 2 132469418 132543949 + MGP_C3HHeJ_P0057312 Ebf4 protein_coding protein_coding MGP_C3HHeJ_T0057313.1 MGP_C3HHeJ_G0026218.1 mouse_genomes_project 2 132470188 132543949 + Ebf4 protein_coding retained_intron MGP_C3HHeJ_T0057314.1 MGP_C3HHeJ_G0026218.1 mouse_genomes_project 2 132470188 132543949 + MGP_C3HHeJ_P0057314 Ebf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057315.1 MGP_C3HHeJ_G0026218.1 mouse_genomes_project 2 132470188 132543949 + MGP_C3HHeJ_P0057315 Ebf4 protein_coding protein_coding MGP_C3HHeJ_T0057316.1 MGP_C3HHeJ_G0026218.1 mouse_genomes_project 2 132470188 132543949 + MGP_C3HHeJ_P0057316 Ebf4 protein_coding protein_coding MGP_C3HHeJ_T0057317.1 MGP_C3HHeJ_G0026218.1 mouse_genomes_project 2 132470188 132543949 + MGP_C3HHeJ_P0057317 Ebf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099177.1 MGP_C3HHeJ_G0037371.1 mouse_genomes_project 2 17811201 17811308 + Gm23970 snRNA snRNA MGP_C3HHeJ_T0057941.1 MGP_C3HHeJ_G0026372.1 mouse_genomes_project 2 155355626 155375967 + MGP_C3HHeJ_P0057941 Tbc1d20 protein_coding protein_coding MGP_C3HHeJ_T0057942.1 MGP_C3HHeJ_G0026372.1 mouse_genomes_project 2 155355649 155369810 + MGP_C3HHeJ_P0057942 Tbc1d20 protein_coding protein_coding MGP_C3HHeJ_T0057943.1 MGP_C3HHeJ_G0026372.1 mouse_genomes_project 2 155355670 155375967 + Tbc1d20 protein_coding retained_intron MGP_C3HHeJ_T0057944.1 MGP_C3HHeJ_G0026372.1 mouse_genomes_project 2 155355978 155370156 + MGP_C3HHeJ_P0057944 Tbc1d20 protein_coding protein_coding MGP_C3HHeJ_T0057945.1 MGP_C3HHeJ_G0026372.1 mouse_genomes_project 2 155369926 155372789 + Tbc1d20 protein_coding retained_intron MGP_C3HHeJ_T0011391.1 MGP_C3HHeJ_G0009524.1 mouse_genomes_project 2 5576861 5577152 - Gm24534 misc_RNA misc_RNA MGP_C3HHeJ_T0013542.1 MGP_C3HHeJ_G0011646.1 mouse_genomes_project 2 102865248 102865687 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054695.1 MGP_C3HHeJ_G0025507.1 mouse_genomes_project 2 63051982 63180767 - MGP_C3HHeJ_P0054695 Fign protein_coding protein_coding MGP_C3HHeJ_T0054696.1 MGP_C3HHeJ_G0025507.1 mouse_genomes_project 2 63057794 63180793 - MGP_C3HHeJ_P0054696 Fign protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054697.1 MGP_C3HHeJ_G0025507.1 mouse_genomes_project 2 63060901 63180743 - Fign protein_coding processed_transcript MGP_C3HHeJ_T0054698.1 MGP_C3HHeJ_G0025507.1 mouse_genomes_project 2 63061070 63180765 - Fign protein_coding processed_transcript MGP_C3HHeJ_T0004082.1 MGP_C3HHeJ_G0003607.1 mouse_genomes_project 2 167337205 167338157 + 0610039K10Rik antisense antisense MGP_C3HHeJ_T0004083.1 MGP_C3HHeJ_G0003607.1 mouse_genomes_project 2 167337205 167338156 + 0610039K10Rik antisense antisense MGP_C3HHeJ_T0059588.1 MGP_C3HHeJ_G0026748.1 mouse_genomes_project 2 186286227 186288032 - MGP_C3HHeJ_P0059588 Sox18 protein_coding protein_coding MGP_C3HHeJ_T0057018.1 MGP_C3HHeJ_G0026144.1 mouse_genomes_project 2 127088071 127106303 + MGP_C3HHeJ_P0057018 Ctxn2 protein_coding protein_coding MGP_C3HHeJ_T0011413.1 MGP_C3HHeJ_G0009546.1 mouse_genomes_project 2 105915153 105915388 - Gm27308 misc_RNA misc_RNA MGP_C3HHeJ_T0057458.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737444 133766999 + MGP_C3HHeJ_P0057458 Smox protein_coding protein_coding MGP_C3HHeJ_T0057459.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737712 133771969 + MGP_C3HHeJ_P0057459 Smox protein_coding protein_coding MGP_C3HHeJ_T0057460.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737871 133767038 + MGP_C3HHeJ_P0057460 Smox protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057461.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737891 133771958 + Smox protein_coding retained_intron MGP_C3HHeJ_T0057462.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737891 133771958 + MGP_C3HHeJ_P0057462 Smox protein_coding protein_coding MGP_C3HHeJ_T0057463.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737891 133771958 + MGP_C3HHeJ_P0057463 Smox protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057464.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737891 133771958 + MGP_C3HHeJ_P0057464 Smox protein_coding protein_coding MGP_C3HHeJ_T0057465.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737891 133771958 + MGP_C3HHeJ_P0057465 Smox protein_coding protein_coding MGP_C3HHeJ_T0057466.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737891 133771958 + MGP_C3HHeJ_P0057466 Smox protein_coding protein_coding MGP_C3HHeJ_T0057467.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737891 133771958 + MGP_C3HHeJ_P0057467 Smox protein_coding protein_coding MGP_C3HHeJ_T0057468.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737891 133771958 + MGP_C3HHeJ_P0057468 Smox protein_coding protein_coding MGP_C3HHeJ_T0057469.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737912 133772708 + MGP_C3HHeJ_P0057469 Smox protein_coding protein_coding MGP_C3HHeJ_T0057470.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737941 133771953 + MGP_C3HHeJ_P0057470 Smox protein_coding protein_coding MGP_C3HHeJ_T0057471.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133738212 133758866 + MGP_C3HHeJ_P0057471 Smox protein_coding protein_coding MGP_C3HHeJ_T0057472.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133755640 133758903 + Smox protein_coding processed_transcript MGP_C3HHeJ_T0057473.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133766941 133771665 + MGP_C3HHeJ_P0057473 Smox protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057474.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133768680 133771927 + Smox protein_coding retained_intron MGP_C3HHeJ_T0010345.1 MGP_C3HHeJ_G0008478.1 mouse_genomes_project 2 92616578 92616676 + Mir1955 miRNA miRNA MGP_C3HHeJ_T0057930.1 MGP_C3HHeJ_G0026367.1 mouse_genomes_project 2 155054735 155058773 + MGP_C3HHeJ_P0057930 Slc52a3 protein_coding protein_coding MGP_C3HHeJ_T0055352.1 MGP_C3HHeJ_G0025641.1 mouse_genomes_project 2 84548098 84561909 + MGP_C3HHeJ_P0055352 Ube2l6 protein_coding protein_coding MGP_C3HHeJ_T0055353.1 MGP_C3HHeJ_G0025641.1 mouse_genomes_project 2 84548104 84555604 + MGP_C3HHeJ_P0055353 Ube2l6 protein_coding protein_coding MGP_C3HHeJ_T0055354.1 MGP_C3HHeJ_G0025641.1 mouse_genomes_project 2 84551912 84562066 + Ube2l6 protein_coding processed_transcript MGP_C3HHeJ_T0055355.1 MGP_C3HHeJ_G0025641.1 mouse_genomes_project 2 84555441 84560043 + Ube2l6 protein_coding retained_intron MGP_C3HHeJ_T0010329.1 MGP_C3HHeJ_G0008462.1 mouse_genomes_project 2 51042235 51042385 + Gm22095 miRNA miRNA MGP_C3HHeJ_T0007101.1 MGP_C3HHeJ_G0005818.1 mouse_genomes_project 2 34496281 34497007 + Gm13431 lincRNA lincRNA MGP_C3HHeJ_T0007102.1 MGP_C3HHeJ_G0005818.1 mouse_genomes_project 2 34496329 34502449 + Gm13431 lincRNA lincRNA MGP_C3HHeJ_T0007103.1 MGP_C3HHeJ_G0005818.1 mouse_genomes_project 2 34499996 34502381 + Gm13431 lincRNA lincRNA MGP_C3HHeJ_T0058343.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159390669 159434159 - MGP_C3HHeJ_P0058343 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058344.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159390672 159434112 - Cpne1 protein_coding retained_intron MGP_C3HHeJ_T0058345.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159390672 159434163 - MGP_C3HHeJ_P0058345 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058348.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159390674 159434167 - MGP_C3HHeJ_P0058348 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058349.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159392165 159393128 - Cpne1 protein_coding processed_transcript MGP_C3HHeJ_T0058350.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159392187 159434125 - MGP_C3HHeJ_P0058350 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058351.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159392221 159395085 - MGP_C3HHeJ_P0058351 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058352.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159392226 159395110 - Cpne1 protein_coding retained_intron MGP_C3HHeJ_T0058353.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159392340 159434128 - MGP_C3HHeJ_P0058353 Cpne1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058354.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159392345 159396993 - MGP_C3HHeJ_P0058354 Cpne1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058355.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159392930 159395385 - Cpne1 protein_coding retained_intron MGP_C3HHeJ_T0058356.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159393033 159434189 - MGP_C3HHeJ_P0058356 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058357.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159396231 159434133 - MGP_C3HHeJ_P0058357 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058358.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159396252 159397424 - Cpne1 protein_coding retained_intron MGP_C3HHeJ_T0058359.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159396999 159434183 - MGP_C3HHeJ_P0058359 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058360.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159397406 159434133 - MGP_C3HHeJ_P0058360 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058361.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159397732 159434087 - MGP_C3HHeJ_P0058361 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058362.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159397743 159423321 - MGP_C3HHeJ_P0058362 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0053585.1 MGP_C3HHeJ_G0025309.1 mouse_genomes_project 2 28799415 28804573 - Asb6 protein_coding retained_intron MGP_C3HHeJ_T0053586.1 MGP_C3HHeJ_G0025309.1 mouse_genomes_project 2 28799415 28806652 - MGP_C3HHeJ_P0053586 Asb6 protein_coding protein_coding MGP_C3HHeJ_T0053587.1 MGP_C3HHeJ_G0025309.1 mouse_genomes_project 2 28800788 28804584 - MGP_C3HHeJ_P0053587 Asb6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053588.1 MGP_C3HHeJ_G0025309.1 mouse_genomes_project 2 28801474 28804610 - Asb6 protein_coding retained_intron MGP_C3HHeJ_T0053589.1 MGP_C3HHeJ_G0025309.1 mouse_genomes_project 2 28801778 28803813 - Asb6 protein_coding retained_intron MGP_C3HHeJ_T0098394.1 MGP_C3HHeJ_G0036600.1 mouse_genomes_project 2 3998583 4001124 - Gm10855 sense_intronic sense_intronic MGP_C3HHeJ_T0007339.1 MGP_C3HHeJ_G0006014.1 mouse_genomes_project 2 175374287 175376735 + Gm14640 lincRNA lincRNA MGP_C3HHeJ_T0053733.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30315521 30335119 + MGP_C3HHeJ_P0053733 Pomt1 protein_coding protein_coding MGP_C3HHeJ_T0053734.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30315574 30316632 + Pomt1 protein_coding retained_intron MGP_C3HHeJ_T0053735.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30315603 30322947 + Pomt1 protein_coding retained_intron MGP_C3HHeJ_T0053736.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30315616 30335115 + Pomt1 protein_coding retained_intron MGP_C3HHeJ_T0053737.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30315968 30322572 + MGP_C3HHeJ_P0053737 Pomt1 protein_coding protein_coding MGP_C3HHeJ_T0053738.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30316270 30322662 + MGP_C3HHeJ_P0053738 Pomt1 protein_coding protein_coding MGP_C3HHeJ_T0053739.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30323308 30329859 + MGP_C3HHeJ_P0053739 Pomt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053740.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30324239 30327641 + Pomt1 protein_coding retained_intron MGP_C3HHeJ_T0053741.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30326522 30330721 + Pomt1 protein_coding retained_intron MGP_C3HHeJ_T0053742.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30327612 30332735 + MGP_C3HHeJ_P0053742 Pomt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053743.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30330222 30331642 + Pomt1 protein_coding retained_intron MGP_C3HHeJ_T0052584.1 MGP_C3HHeJ_G0025136.1 mouse_genomes_project 2 21654464 21681578 - MGP_C3HHeJ_P0052584 Tbpl2 protein_coding protein_coding MGP_C3HHeJ_T0052585.1 MGP_C3HHeJ_G0025136.1 mouse_genomes_project 2 21654658 21681515 - MGP_C3HHeJ_P0052585 Tbpl2 protein_coding protein_coding MGP_C3HHeJ_T0054194.1 MGP_C3HHeJ_G0025421.1 mouse_genomes_project 2 35401210 35402164 - MGP_C3HHeJ_P0054194 Olfr362 protein_coding protein_coding MGP_C3HHeJ_T0010273.1 MGP_C3HHeJ_G0008406.1 mouse_genomes_project 2 7713321 7713430 + Mir297b miRNA miRNA MGP_C3HHeJ_T0056288.1 MGP_C3HHeJ_G0025963.1 mouse_genomes_project 2 110992920 111016304 + MGP_C3HHeJ_P0056288 Ccdc34 protein_coding protein_coding MGP_C3HHeJ_T0056289.1 MGP_C3HHeJ_G0025963.1 mouse_genomes_project 2 110993065 111130111 + MGP_C3HHeJ_P0056289 Ccdc34 protein_coding protein_coding MGP_C3HHeJ_T0056290.1 MGP_C3HHeJ_G0025963.1 mouse_genomes_project 2 110993083 111016310 + MGP_C3HHeJ_P0056290 Ccdc34 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056291.1 MGP_C3HHeJ_G0025963.1 mouse_genomes_project 2 110997125 111012283 + Ccdc34 protein_coding retained_intron MGP_C3HHeJ_T0056292.1 MGP_C3HHeJ_G0025963.1 mouse_genomes_project 2 111009043 111015875 + Ccdc34 protein_coding retained_intron MGP_C3HHeJ_T0056293.1 MGP_C3HHeJ_G0025963.1 mouse_genomes_project 2 111011911 111015690 + Ccdc34 protein_coding retained_intron MGP_C3HHeJ_T0013480.1 MGP_C3HHeJ_G0011584.1 mouse_genomes_project 2 80614067 80615195 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055177.1 MGP_C3HHeJ_G0025604.1 mouse_genomes_project 2 76803856 76862526 - MGP_C3HHeJ_P0055177 Sestd1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055178.1 MGP_C3HHeJ_G0025604.1 mouse_genomes_project 2 76814494 76817037 - Sestd1 protein_coding processed_transcript MGP_C3HHeJ_T0055179.1 MGP_C3HHeJ_G0025604.1 mouse_genomes_project 2 76814496 76897609 - Sestd1 protein_coding processed_transcript MGP_C3HHeJ_T0058108.1 MGP_C3HHeJ_G0026424.1 mouse_genomes_project 2 157320001 157328040 + MGP_C3HHeJ_P0058108 Bpifa3 protein_coding protein_coding MGP_C3HHeJ_T0058109.1 MGP_C3HHeJ_G0026424.1 mouse_genomes_project 2 157320001 157328040 + MGP_C3HHeJ_P0058109 Bpifa3 protein_coding protein_coding MGP_C3HHeJ_T0058110.1 MGP_C3HHeJ_G0026424.1 mouse_genomes_project 2 157325231 157327303 + MGP_C3HHeJ_P0058110 Bpifa3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055104.1 MGP_C3HHeJ_G0025589.1 mouse_genomes_project 2 75239337 75269090 - MGP_C3HHeJ_P0055104 Nfe2l2 protein_coding protein_coding MGP_C3HHeJ_T0055105.1 MGP_C3HHeJ_G0025589.1 mouse_genomes_project 2 75255508 75268938 - Nfe2l2 protein_coding processed_transcript MGP_C3HHeJ_T0052946.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23552068 23605364 + MGP_C3HHeJ_P0052946 Kcnt1 protein_coding protein_coding MGP_C3HHeJ_T0052947.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23552129 23577261 + Kcnt1 protein_coding retained_intron MGP_C3HHeJ_T0052948.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23552188 23604436 + MGP_C3HHeJ_P0052948 Kcnt1 protein_coding protein_coding MGP_C3HHeJ_T0052949.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23552302 23604436 + MGP_C3HHeJ_P0052949 Kcnt1 protein_coding protein_coding MGP_C3HHeJ_T0052950.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23566102 23605882 + MGP_C3HHeJ_P0052950 Kcnt1 protein_coding protein_coding MGP_C3HHeJ_T0052951.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23566176 23583494 + Kcnt1 protein_coding retained_intron MGP_C3HHeJ_T0052952.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23566182 23604930 + MGP_C3HHeJ_P0052952 Kcnt1 protein_coding protein_coding MGP_C3HHeJ_T0052953.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23566189 23605399 + Kcnt1 protein_coding retained_intron MGP_C3HHeJ_T0052954.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23566192 23606592 + MGP_C3HHeJ_P0052954 Kcnt1 protein_coding protein_coding MGP_C3HHeJ_T0052955.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23566200 23604436 + MGP_C3HHeJ_P0052955 Kcnt1 protein_coding protein_coding MGP_C3HHeJ_T0052956.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23582661 23604911 + Kcnt1 protein_coding retained_intron MGP_C3HHeJ_T0052957.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23589209 23591714 + MGP_C3HHeJ_P0052957 Kcnt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052958.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23591820 23598228 + MGP_C3HHeJ_P0052958 Kcnt1 protein_coding protein_coding MGP_C3HHeJ_T0052959.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23596381 23605242 + Kcnt1 protein_coding retained_intron MGP_C3HHeJ_T0052960.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23599212 23604559 + Kcnt1 protein_coding retained_intron MGP_C3HHeJ_T0057077.1 MGP_C3HHeJ_G0026161.1 mouse_genomes_project 2 128651046 128701427 - MGP_C3HHeJ_P0057077 Gabpb1 protein_coding protein_coding MGP_C3HHeJ_T0057078.1 MGP_C3HHeJ_G0026161.1 mouse_genomes_project 2 128652517 128701361 - MGP_C3HHeJ_P0057078 Gabpb1 protein_coding protein_coding MGP_C3HHeJ_T0057079.1 MGP_C3HHeJ_G0026161.1 mouse_genomes_project 2 128652519 128701403 - MGP_C3HHeJ_P0057079 Gabpb1 protein_coding protein_coding MGP_C3HHeJ_T0057080.1 MGP_C3HHeJ_G0026161.1 mouse_genomes_project 2 128662270 128702194 - MGP_C3HHeJ_P0057080 Gabpb1 protein_coding protein_coding MGP_C3HHeJ_T0057081.1 MGP_C3HHeJ_G0026161.1 mouse_genomes_project 2 128662655 128701345 - MGP_C3HHeJ_P0057081 Gabpb1 protein_coding protein_coding MGP_C3HHeJ_T0057082.1 MGP_C3HHeJ_G0026161.1 mouse_genomes_project 2 128671406 128701451 - MGP_C3HHeJ_P0057082 Gabpb1 protein_coding protein_coding MGP_C3HHeJ_T0057083.1 MGP_C3HHeJ_G0026161.1 mouse_genomes_project 2 128675999 128701198 - Gabpb1 protein_coding processed_transcript MGP_C3HHeJ_T0057084.1 MGP_C3HHeJ_G0026161.1 mouse_genomes_project 2 128677290 128701211 - MGP_C3HHeJ_P0057084 Gabpb1 protein_coding protein_coding MGP_C3HHeJ_T0057085.1 MGP_C3HHeJ_G0026161.1 mouse_genomes_project 2 128677367 128687700 - MGP_C3HHeJ_P0057085 Gabpb1 protein_coding protein_coding MGP_C3HHeJ_T0013528.1 MGP_C3HHeJ_G0011632.1 mouse_genomes_project 2 96638257 96638417 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010373.1 MGP_C3HHeJ_G0008506.1 mouse_genomes_project 2 132710470 132710533 - Gm23876 miRNA miRNA MGP_C3HHeJ_T0007079.1 MGP_C3HHeJ_G0005801.1 mouse_genomes_project 2 23870065 23871063 + 1810012K08Rik lincRNA lincRNA MGP_C3HHeJ_T0013471.1 MGP_C3HHeJ_G0011575.1 mouse_genomes_project 2 78314542 78315040 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013309.1 MGP_C3HHeJ_G0011413.1 mouse_genomes_project 2 17200765 17202118 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057103.1 MGP_C3HHeJ_G0026165.1 mouse_genomes_project 2 128938066 128983174 - MGP_C3HHeJ_P0057103 Sppl2a protein_coding protein_coding MGP_C3HHeJ_T0057104.1 MGP_C3HHeJ_G0026165.1 mouse_genomes_project 2 128941922 128967961 - MGP_C3HHeJ_P0057104 Sppl2a protein_coding protein_coding MGP_C3HHeJ_T0057105.1 MGP_C3HHeJ_G0026165.1 mouse_genomes_project 2 128962480 128971982 - Sppl2a protein_coding retained_intron MGP_C3HHeJ_T0053235.1 MGP_C3HHeJ_G0025257.1 mouse_genomes_project 2 26319298 26325670 + Gbgt1 protein_coding processed_transcript MGP_C3HHeJ_T0053236.1 MGP_C3HHeJ_G0025257.1 mouse_genomes_project 2 26319298 26327823 + MGP_C3HHeJ_P0053236 Gbgt1 protein_coding protein_coding MGP_C3HHeJ_T0053237.1 MGP_C3HHeJ_G0025257.1 mouse_genomes_project 2 26320153 26327823 + MGP_C3HHeJ_P0053237 Gbgt1 protein_coding protein_coding MGP_C3HHeJ_T0054559.1 MGP_C3HHeJ_G0025487.1 mouse_genomes_project 2 58411188 58431966 + MGP_C3HHeJ_P0054559 Dapl1 protein_coding protein_coding MGP_C3HHeJ_T0054560.1 MGP_C3HHeJ_G0025487.1 mouse_genomes_project 2 58411204 58431966 + Dapl1 protein_coding processed_transcript MGP_C3HHeJ_T0053847.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30701826 30722424 + MGP_C3HHeJ_P0053847 St6galnac6 protein_coding protein_coding MGP_C3HHeJ_T0053848.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30701843 30721477 + MGP_C3HHeJ_P0053848 St6galnac6 protein_coding protein_coding MGP_C3HHeJ_T0053849.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30709087 30723701 + MGP_C3HHeJ_P0053849 St6galnac6 protein_coding protein_coding MGP_C3HHeJ_T0053850.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30709101 30723701 + MGP_C3HHeJ_P0053850 St6galnac6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053851.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30710132 30723699 + MGP_C3HHeJ_P0053851 St6galnac6 protein_coding protein_coding MGP_C3HHeJ_T0053852.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30710146 30719725 + St6galnac6 protein_coding retained_intron MGP_C3HHeJ_T0053853.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30710525 30723699 + MGP_C3HHeJ_P0053853 St6galnac6 protein_coding protein_coding MGP_C3HHeJ_T0053854.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30710778 30714389 + MGP_C3HHeJ_P0053854 St6galnac6 protein_coding protein_coding MGP_C3HHeJ_T0053855.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30711074 30717878 + MGP_C3HHeJ_P0053855 St6galnac6 protein_coding protein_coding MGP_C3HHeJ_T0053856.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30711104 30717898 + MGP_C3HHeJ_P0053856 St6galnac6 protein_coding protein_coding MGP_C3HHeJ_T0053857.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30711363 30723708 + MGP_C3HHeJ_P0053857 St6galnac6 protein_coding protein_coding MGP_C3HHeJ_T0013675.1 MGP_C3HHeJ_G0011779.1 mouse_genomes_project 2 155827934 155828535 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013347.1 MGP_C3HHeJ_G0011451.1 mouse_genomes_project 2 33725707 33726229 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010291.1 MGP_C3HHeJ_G0008424.1 mouse_genomes_project 2 15507435 15507493 + Mir7655 miRNA miRNA MGP_C3HHeJ_T0010316.1 MGP_C3HHeJ_G0008449.1 mouse_genomes_project 2 30755162 30755248 + Mir1954 miRNA miRNA MGP_C3HHeJ_T0056161.1 MGP_C3HHeJ_G0025936.1 mouse_genomes_project 2 104862333 104864317 + MGP_C3HHeJ_P0056161 A930018P22Rik protein_coding protein_coding MGP_C3HHeJ_T0058500.1 MGP_C3HHeJ_G0026494.1 mouse_genomes_project 2 160522304 160588264 - MGP_C3HHeJ_P0058500 Rbl1 protein_coding protein_coding MGP_C3HHeJ_T0058501.1 MGP_C3HHeJ_G0026494.1 mouse_genomes_project 2 160549018 160588286 - Rbl1 protein_coding retained_intron MGP_C3HHeJ_T0058502.1 MGP_C3HHeJ_G0026494.1 mouse_genomes_project 2 160557528 160588278 - Rbl1 protein_coding retained_intron MGP_C3HHeJ_T0058503.1 MGP_C3HHeJ_G0026494.1 mouse_genomes_project 2 160570596 160574715 - Rbl1 protein_coding retained_intron MGP_C3HHeJ_T0010275.1 MGP_C3HHeJ_G0008408.1 mouse_genomes_project 2 7713857 7713954 + Gm26092 miRNA miRNA MGP_C3HHeJ_T0058998.1 MGP_C3HHeJ_G0026619.1 mouse_genomes_project 2 169907203 169998608 - Sulf2 protein_coding processed_transcript MGP_C3HHeJ_T0058999.1 MGP_C3HHeJ_G0026619.1 mouse_genomes_project 2 169907723 169909073 - Sulf2 protein_coding retained_intron MGP_C3HHeJ_T0059000.1 MGP_C3HHeJ_G0026619.1 mouse_genomes_project 2 169907841 169997839 - MGP_C3HHeJ_P0059000 Sulf2 protein_coding protein_coding MGP_C3HHeJ_T0059001.1 MGP_C3HHeJ_G0026619.1 mouse_genomes_project 2 169907868 169911169 - Sulf2 protein_coding processed_transcript MGP_C3HHeJ_T0059002.1 MGP_C3HHeJ_G0026619.1 mouse_genomes_project 2 169926402 169997809 - Sulf2 protein_coding processed_transcript MGP_C3HHeJ_T0059003.1 MGP_C3HHeJ_G0026619.1 mouse_genomes_project 2 169973674 169997426 - Sulf2 protein_coding processed_transcript MGP_C3HHeJ_T0007190.1 MGP_C3HHeJ_G0005891.1 mouse_genomes_project 2 97532504 97632300 - 4930445B16Rik lincRNA lincRNA MGP_C3HHeJ_T0053111.1 MGP_C3HHeJ_G0025233.1 mouse_genomes_project 2 24656681 24660165 + MGP_C3HHeJ_P0053111 Rpl7a protein_coding protein_coding MGP_C3HHeJ_T0053112.1 MGP_C3HHeJ_G0025233.1 mouse_genomes_project 2 24657663 24659904 + Rpl7a protein_coding processed_transcript MGP_C3HHeJ_T0053113.1 MGP_C3HHeJ_G0025233.1 mouse_genomes_project 2 24657667 24660165 + Rpl7a protein_coding processed_transcript MGP_C3HHeJ_T0053114.1 MGP_C3HHeJ_G0025233.1 mouse_genomes_project 2 24657852 24660165 + Rpl7a protein_coding processed_transcript MGP_C3HHeJ_T0053115.1 MGP_C3HHeJ_G0025233.1 mouse_genomes_project 2 24659038 24660165 + Rpl7a protein_coding processed_transcript MGP_C3HHeJ_T0053116.1 MGP_C3HHeJ_G0025233.1 mouse_genomes_project 2 24659465 24660165 + Rpl7a protein_coding processed_transcript MGP_C3HHeJ_T0053117.1 MGP_C3HHeJ_G0025233.1 mouse_genomes_project 2 24659517 24660059 + Rpl7a protein_coding processed_transcript MGP_C3HHeJ_T0013385.1 MGP_C3HHeJ_G0011489.1 mouse_genomes_project 2 47976569 47977344 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054288.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37370132 37421701 - MGP_C3HHeJ_P0054288 Golga1 protein_coding protein_coding MGP_C3HHeJ_T0054289.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37370368 37421728 - MGP_C3HHeJ_P0054289 Golga1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0054290.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37370374 37409224 - MGP_C3HHeJ_P0054290 Golga1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054291.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37370650 37372278 - Golga1 protein_coding processed_transcript MGP_C3HHeJ_T0054292.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37371524 37372438 - Golga1 protein_coding retained_intron MGP_C3HHeJ_T0054293.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37371684 37373433 - MGP_C3HHeJ_P0054293 Golga1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054294.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37372025 37373113 - Golga1 protein_coding retained_intron MGP_C3HHeJ_T0054295.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37377338 37421701 - Golga1 protein_coding retained_intron MGP_C3HHeJ_T0054296.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37397601 37412332 - MGP_C3HHeJ_P0054296 Golga1 protein_coding protein_coding MGP_C3HHeJ_T0054297.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37403306 37421698 - Golga1 protein_coding retained_intron MGP_C3HHeJ_T0001036.1 MGP_C3HHeJ_G0000973.1 mouse_genomes_project 2 34335016 34338188 - TEC TEC MGP_C3HHeJ_T0052990.1 MGP_C3HHeJ_G0025214.1 mouse_genomes_project 2 23983046 24035267 - MGP_C3HHeJ_P0052990 Ccdc187 protein_coding unknown_likely_coding MGP_C3HHeJ_T0052992.1 MGP_C3HHeJ_G0025214.1 mouse_genomes_project 2 24011441 24035441 - MGP_C3HHeJ_P0052992 Ccdc187 protein_coding protein_coding MGP_C3HHeJ_T0052993.1 MGP_C3HHeJ_G0025214.1 mouse_genomes_project 2 24020867 24028943 - MGP_C3HHeJ_P0052993 Ccdc187 protein_coding protein_coding MGP_C3HHeJ_T0010293.1 MGP_C3HHeJ_G0008426.1 mouse_genomes_project 2 20152316 20152384 + Mir3967 miRNA miRNA MGP_C3HHeJ_T0098398.1 MGP_C3HHeJ_G0036604.1 mouse_genomes_project 2 116237294 116238312 + Gm28492 sense_intronic sense_intronic MGP_C3HHeJ_T0056162.1 MGP_C3HHeJ_G0025937.1 mouse_genomes_project 2 104887465 105166587 - MGP_C3HHeJ_P0056162 D430041D05Rik protein_coding protein_coding MGP_C3HHeJ_T0056163.1 MGP_C3HHeJ_G0025937.1 mouse_genomes_project 2 104891438 104975271 - D430041D05Rik protein_coding retained_intron MGP_C3HHeJ_T0056164.1 MGP_C3HHeJ_G0025937.1 mouse_genomes_project 2 104893171 105007211 - MGP_C3HHeJ_P0056164 D430041D05Rik protein_coding protein_coding MGP_C3HHeJ_T0056165.1 MGP_C3HHeJ_G0025937.1 mouse_genomes_project 2 104896568 104902842 - D430041D05Rik protein_coding retained_intron MGP_C3HHeJ_T0056166.1 MGP_C3HHeJ_G0025937.1 mouse_genomes_project 2 104928539 104985812 - D430041D05Rik protein_coding retained_intron MGP_C3HHeJ_T0056167.1 MGP_C3HHeJ_G0025937.1 mouse_genomes_project 2 104952437 105005562 - D430041D05Rik protein_coding retained_intron MGP_C3HHeJ_T0056168.1 MGP_C3HHeJ_G0025937.1 mouse_genomes_project 2 105002707 105166245 - MGP_C3HHeJ_P0056168 D430041D05Rik protein_coding protein_coding MGP_C3HHeJ_T0056169.1 MGP_C3HHeJ_G0025937.1 mouse_genomes_project 2 105003000 105166246 - MGP_C3HHeJ_P0056169 D430041D05Rik protein_coding protein_coding MGP_C3HHeJ_T0058839.1 MGP_C3HHeJ_G0026589.1 mouse_genomes_project 2 168526262 168529272 + MGP_C3HHeJ_P0058839 Ube2c protein_coding protein_coding MGP_C3HHeJ_T0058840.1 MGP_C3HHeJ_G0026589.1 mouse_genomes_project 2 168526267 168535187 + MGP_C3HHeJ_P0058840 Ube2c protein_coding protein_coding MGP_C3HHeJ_T0004114.1 MGP_C3HHeJ_G0003630.1 mouse_genomes_project 2 178608958 178623697 - Nespas antisense antisense MGP_C3HHeJ_T0004115.1 MGP_C3HHeJ_G0003630.1 mouse_genomes_project 2 178609915 178623650 - Nespas antisense antisense MGP_C3HHeJ_T0004116.1 MGP_C3HHeJ_G0003630.1 mouse_genomes_project 2 178612074 178613157 - Nespas antisense antisense MGP_C3HHeJ_T0052727.1 MGP_C3HHeJ_G0025160.1 mouse_genomes_project 2 22870728 22873244 - MGP_C3HHeJ_P0052727 Tubb4b protein_coding protein_coding MGP_C3HHeJ_T0052728.1 MGP_C3HHeJ_G0025160.1 mouse_genomes_project 2 22872064 22873196 - Tubb4b protein_coding processed_transcript MGP_C3HHeJ_T0003851.1 MGP_C3HHeJ_G0003440.1 mouse_genomes_project 2 23472281 23475352 + antisense antisense MGP_C3HHeJ_T0003810.1 MGP_C3HHeJ_G0003409.1 mouse_genomes_project 2 442587 448521 + Gm13184 antisense antisense MGP_C3HHeJ_T0052135.1 MGP_C3HHeJ_G0025062.1 mouse_genomes_project 2 3126058 3159759 - MGP_C3HHeJ_P0052135 Proser2 protein_coding protein_coding MGP_C3HHeJ_T0052136.1 MGP_C3HHeJ_G0025062.1 mouse_genomes_project 2 3128477 3159694 - MGP_C3HHeJ_P0052136 Proser2 protein_coding protein_coding MGP_C3HHeJ_T0052137.1 MGP_C3HHeJ_G0025062.1 mouse_genomes_project 2 3129652 3159687 - MGP_C3HHeJ_P0052137 Proser2 protein_coding protein_coding MGP_C3HHeJ_T0052138.1 MGP_C3HHeJ_G0025062.1 mouse_genomes_project 2 3154354 3159729 - Proser2 protein_coding processed_transcript MGP_C3HHeJ_T0017639.1 MGP_C3HHeJ_G0015228.1 mouse_genomes_project 2 130298943 130535463 - Gm14005 processed_transcript processed_transcript MGP_C3HHeJ_T0017640.1 MGP_C3HHeJ_G0015228.1 mouse_genomes_project 2 130405231 130535644 - Gm14005 processed_transcript processed_transcript MGP_C3HHeJ_T0017641.1 MGP_C3HHeJ_G0015228.1 mouse_genomes_project 2 130424806 130535670 - Gm14005 processed_transcript processed_transcript MGP_C3HHeJ_T0017642.1 MGP_C3HHeJ_G0015228.1 mouse_genomes_project 2 130424982 130535493 - Gm14005 processed_transcript processed_transcript MGP_C3HHeJ_T0017643.1 MGP_C3HHeJ_G0015228.1 mouse_genomes_project 2 130452287 130535563 - Gm14005 processed_transcript processed_transcript MGP_C3HHeJ_T0017644.1 MGP_C3HHeJ_G0015228.1 mouse_genomes_project 2 130475851 130535509 - Gm14005 processed_transcript processed_transcript MGP_C3HHeJ_T0017645.1 MGP_C3HHeJ_G0015228.1 mouse_genomes_project 2 130475852 130535214 - Gm14005 processed_transcript processed_transcript MGP_C3HHeJ_T0059399.1 MGP_C3HHeJ_G0026718.1 mouse_genomes_project 2 185302501 185322936 + MGP_C3HHeJ_P0059399 Slc17a9 protein_coding protein_coding MGP_C3HHeJ_T0059400.1 MGP_C3HHeJ_G0026718.1 mouse_genomes_project 2 185302617 185312038 + Slc17a9 protein_coding retained_intron MGP_C3HHeJ_T0059401.1 MGP_C3HHeJ_G0026718.1 mouse_genomes_project 2 185302638 185316845 + Slc17a9 protein_coding processed_transcript MGP_C3HHeJ_T0059402.1 MGP_C3HHeJ_G0026718.1 mouse_genomes_project 2 185316150 185321994 + Slc17a9 protein_coding processed_transcript MGP_C3HHeJ_T0059403.1 MGP_C3HHeJ_G0026718.1 mouse_genomes_project 2 185318006 185322072 + Slc17a9 protein_coding retained_intron MGP_C3HHeJ_T0055445.1 MGP_C3HHeJ_G0025695.1 mouse_genomes_project 2 86212414 86213353 - MGP_C3HHeJ_P0055445 Olfr1054 protein_coding protein_coding MGP_C3HHeJ_T0057178.1 MGP_C3HHeJ_G0026183.1 mouse_genomes_project 2 129675192 129694862 + MGP_C3HHeJ_P0057178 Mrps5 protein_coding protein_coding MGP_C3HHeJ_T0057179.1 MGP_C3HHeJ_G0026183.1 mouse_genomes_project 2 129675389 129692550 + Mrps5 protein_coding retained_intron MGP_C3HHeJ_T0057180.1 MGP_C3HHeJ_G0026183.1 mouse_genomes_project 2 129675389 129684072 + Mrps5 protein_coding retained_intron MGP_C3HHeJ_T0057181.1 MGP_C3HHeJ_G0026183.1 mouse_genomes_project 2 129678395 129683694 + MGP_C3HHeJ_P0057181 Mrps5 protein_coding protein_coding MGP_C3HHeJ_T0057182.1 MGP_C3HHeJ_G0026183.1 mouse_genomes_project 2 129683671 129686388 + Mrps5 protein_coding retained_intron MGP_C3HHeJ_T0057183.1 MGP_C3HHeJ_G0026183.1 mouse_genomes_project 2 129687839 129691880 + Mrps5 protein_coding retained_intron MGP_C3HHeJ_T0057184.1 MGP_C3HHeJ_G0026183.1 mouse_genomes_project 2 129688044 129689257 + Mrps5 protein_coding retained_intron MGP_C3HHeJ_T0007174.1 MGP_C3HHeJ_G0005879.1 mouse_genomes_project 2 91597583 91602836 - Gm17281 lincRNA lincRNA MGP_C3HHeJ_T0004019.1 MGP_C3HHeJ_G0003559.1 mouse_genomes_project 2 134390820 134468046 + Gm14051 antisense antisense MGP_C3HHeJ_T0004045.1 MGP_C3HHeJ_G0003575.1 mouse_genomes_project 2 148295854 148300185 - Gm14092 antisense antisense MGP_C3HHeJ_T0004017.1 MGP_C3HHeJ_G0003557.1 mouse_genomes_project 2 133808439 133810005 + Gm14285 antisense antisense MGP_C3HHeJ_T0057811.1 MGP_C3HHeJ_G0026332.1 mouse_genomes_project 2 151624979 151627991 - MGP_C3HHeJ_P0057811 Cst11 protein_coding protein_coding MGP_C3HHeJ_T0101910.1 MGP_C3HHeJ_G0039875.1 mouse_genomes_project 2 87947916 87948969 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0057156.1 MGP_C3HHeJ_G0026177.1 mouse_genomes_project 2 129443486 129447535 + MGP_C3HHeJ_P0057156 Adra2b protein_coding protein_coding MGP_C3HHeJ_T0057157.1 MGP_C3HHeJ_G0026177.1 mouse_genomes_project 2 129443564 129447535 + MGP_C3HHeJ_P0057157 Adra2b protein_coding protein_coding MGP_C3HHeJ_T0056188.1 MGP_C3HHeJ_G0025941.1 mouse_genomes_project 2 105489264 105491696 - MGP_C3HHeJ_P0056188 Pin1rt1 protein_coding protein_coding MGP_C3HHeJ_T0057017.1 MGP_C3HHeJ_G0026143.1 mouse_genomes_project 2 127049081 127073257 - MGP_C3HHeJ_P0057017 Gm9833 protein_coding protein_coding MGP_C3HHeJ_T0055500.1 MGP_C3HHeJ_G0025740.1 mouse_genomes_project 2 87651379 87655244 + MGP_C3HHeJ_P0055500 Olfr1129 protein_coding protein_coding MGP_C3HHeJ_T0055512.1 MGP_C3HHeJ_G0025751.1 mouse_genomes_project 2 87815356 87816292 - MGP_C3HHeJ_P0055512 Olfr1138 protein_coding protein_coding MGP_C3HHeJ_T0007086.1 MGP_C3HHeJ_G0005806.1 mouse_genomes_project 2 28494011 28498311 + Gm14487 lincRNA lincRNA MGP_C3HHeJ_T0058772.1 MGP_C3HHeJ_G0026561.1 mouse_genomes_project 2 167954677 167961102 - MGP_C3HHeJ_P0058772 Svs3a protein_coding protein_coding MGP_C3HHeJ_T0058569.1 MGP_C3HHeJ_G0026507.1 mouse_genomes_project 2 161636683 161684912 - MGP_C3HHeJ_P0058569 D630003M21Rik protein_coding protein_coding MGP_C3HHeJ_T0058570.1 MGP_C3HHeJ_G0026507.1 mouse_genomes_project 2 161641893 161684912 - MGP_C3HHeJ_P0058570 D630003M21Rik protein_coding protein_coding MGP_C3HHeJ_T0058571.1 MGP_C3HHeJ_G0026507.1 mouse_genomes_project 2 161651480 161684912 - MGP_C3HHeJ_P0058571 D630003M21Rik protein_coding protein_coding MGP_C3HHeJ_T0053954.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31109876 31218174 - MGP_C3HHeJ_P0053954 Garnl3 protein_coding protein_coding MGP_C3HHeJ_T0053955.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31110026 31265505 - MGP_C3HHeJ_P0053955 Garnl3 protein_coding protein_coding MGP_C3HHeJ_T0053956.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31110026 31216141 - MGP_C3HHeJ_P0053956 Garnl3 protein_coding protein_coding MGP_C3HHeJ_T0053957.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31129734 31133431 - Garnl3 protein_coding retained_intron MGP_C3HHeJ_T0053958.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31134030 31237593 - Garnl3 protein_coding processed_transcript MGP_C3HHeJ_T0053959.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31141088 31161544 - MGP_C3HHeJ_P0053959 Garnl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053960.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31145185 31153954 - Garnl3 protein_coding retained_intron MGP_C3HHeJ_T0053961.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31174201 31217721 - Garnl3 protein_coding processed_transcript MGP_C3HHeJ_T0053962.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31181766 31216330 - Garnl3 protein_coding processed_transcript MGP_C3HHeJ_T0053963.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31181771 31265719 - MGP_C3HHeJ_P0053963 Garnl3 protein_coding protein_coding MGP_C3HHeJ_T0053964.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31181773 31265723 - MGP_C3HHeJ_P0053964 Garnl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053965.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31181818 31264677 - MGP_C3HHeJ_P0053965 Garnl3 protein_coding protein_coding MGP_C3HHeJ_T0007062.1 MGP_C3HHeJ_G0005790.1 mouse_genomes_project 2 16304007 16306581 - Carlr lincRNA lincRNA MGP_C3HHeJ_T0003894.1 MGP_C3HHeJ_G0003474.1 mouse_genomes_project 2 37036129 37044861 + Nr5a1os antisense antisense MGP_C3HHeJ_T0055871.1 MGP_C3HHeJ_G0025882.1 mouse_genomes_project 2 92344587 92346540 + MGP_C3HHeJ_P0055871 Gm9821 protein_coding protein_coding MGP_C3HHeJ_T0052092.1 MGP_C3HHeJ_G0025053.1 mouse_genomes_project 2 2035468 2052945 - Optn protein_coding processed_transcript MGP_C3HHeJ_T0052093.1 MGP_C3HHeJ_G0025053.1 mouse_genomes_project 2 2035468 2086507 - MGP_C3HHeJ_P0052093 Optn protein_coding protein_coding MGP_C3HHeJ_T0052094.1 MGP_C3HHeJ_G0025053.1 mouse_genomes_project 2 2035470 2086400 - MGP_C3HHeJ_P0052094 Optn protein_coding protein_coding MGP_C3HHeJ_T0052095.1 MGP_C3HHeJ_G0025053.1 mouse_genomes_project 2 2036127 2054239 - Optn protein_coding processed_transcript MGP_C3HHeJ_T0052096.1 MGP_C3HHeJ_G0025053.1 mouse_genomes_project 2 2068201 2086513 - Optn protein_coding processed_transcript MGP_C3HHeJ_T0054740.1 MGP_C3HHeJ_G0025513.1 mouse_genomes_project 2 65021400 65219379 + MGP_C3HHeJ_P0054740 Csrnp3 protein_coding protein_coding MGP_C3HHeJ_T0054741.1 MGP_C3HHeJ_G0025513.1 mouse_genomes_project 2 65021475 65213439 + MGP_C3HHeJ_P0054741 Csrnp3 protein_coding protein_coding MGP_C3HHeJ_T0054742.1 MGP_C3HHeJ_G0025513.1 mouse_genomes_project 2 65021478 65058551 + Csrnp3 protein_coding retained_intron MGP_C3HHeJ_T0054743.1 MGP_C3HHeJ_G0025513.1 mouse_genomes_project 2 65021488 65211112 + MGP_C3HHeJ_P0054743 Csrnp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054744.1 MGP_C3HHeJ_G0025513.1 mouse_genomes_project 2 65040257 65130908 + Csrnp3 protein_coding retained_intron MGP_C3HHeJ_T0054745.1 MGP_C3HHeJ_G0025513.1 mouse_genomes_project 2 65110946 65211779 + MGP_C3HHeJ_P0054745 Csrnp3 protein_coding protein_coding MGP_C3HHeJ_T0054746.1 MGP_C3HHeJ_G0025513.1 mouse_genomes_project 2 65112675 65211317 + MGP_C3HHeJ_P0054746 Csrnp3 protein_coding protein_coding MGP_C3HHeJ_T0054747.1 MGP_C3HHeJ_G0025513.1 mouse_genomes_project 2 65130417 65210886 + MGP_C3HHeJ_P0054747 Csrnp3 protein_coding protein_coding MGP_C3HHeJ_T0054707.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64206626 64367016 - MGP_C3HHeJ_P0054707 Cobll1 protein_coding protein_coding MGP_C3HHeJ_T0054708.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64206637 64367016 - MGP_C3HHeJ_P0054708 Cobll1 protein_coding protein_coding MGP_C3HHeJ_T0054709.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64206637 64367016 - MGP_C3HHeJ_P0054709 Cobll1 protein_coding protein_coding MGP_C3HHeJ_T0054710.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64206637 64367111 - MGP_C3HHeJ_P0054710 Cobll1 protein_coding protein_coding MGP_C3HHeJ_T0054711.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64206637 64366963 - MGP_C3HHeJ_P0054711 Cobll1 protein_coding protein_coding MGP_C3HHeJ_T0054712.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64222728 64229341 - Cobll1 protein_coding processed_transcript MGP_C3HHeJ_T0054713.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64250293 64367434 - MGP_C3HHeJ_P0054713 Cobll1 protein_coding protein_coding MGP_C3HHeJ_T0054714.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64258102 64367486 - MGP_C3HHeJ_P0054714 Cobll1 protein_coding protein_coding MGP_C3HHeJ_T0054715.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64260672 64364385 - Cobll1 protein_coding processed_transcript MGP_C3HHeJ_T0054716.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64260705 64366963 - MGP_C3HHeJ_P0054716 Cobll1 protein_coding protein_coding MGP_C3HHeJ_T0054717.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64273702 64367437 - Cobll1 protein_coding processed_transcript MGP_C3HHeJ_T0054718.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64276259 64367793 - Cobll1 protein_coding processed_transcript MGP_C3HHeJ_T0054719.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64276423 64366864 - Cobll1 protein_coding processed_transcript MGP_C3HHeJ_T0017544.1 MGP_C3HHeJ_G0015176.1 mouse_genomes_project 2 33135341 33138490 + Gm13448 processed_transcript processed_transcript MGP_C3HHeJ_T0097893.1 MGP_C3HHeJ_G0036105.1 mouse_genomes_project 2 27637333 27637664 - pseudogene pseudogene MGP_C3HHeJ_T0053749.1 MGP_C3HHeJ_G0025335.1 mouse_genomes_project 2 30361317 30371391 - MGP_C3HHeJ_P0053749 Swi5 protein_coding protein_coding MGP_C3HHeJ_T0053750.1 MGP_C3HHeJ_G0025335.1 mouse_genomes_project 2 30361317 30366187 - MGP_C3HHeJ_P0053750 Swi5 protein_coding protein_coding MGP_C3HHeJ_T0053751.1 MGP_C3HHeJ_G0025335.1 mouse_genomes_project 2 30361317 30371328 - MGP_C3HHeJ_P0053751 Swi5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053752.1 MGP_C3HHeJ_G0025335.1 mouse_genomes_project 2 30361317 30371258 - MGP_C3HHeJ_P0053752 Swi5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053753.1 MGP_C3HHeJ_G0025335.1 mouse_genomes_project 2 30361317 30371398 - MGP_C3HHeJ_P0053753 Swi5 protein_coding protein_coding MGP_C3HHeJ_T0053754.1 MGP_C3HHeJ_G0025335.1 mouse_genomes_project 2 30361419 30371392 - MGP_C3HHeJ_P0053754 Swi5 protein_coding protein_coding MGP_C3HHeJ_T0053755.1 MGP_C3HHeJ_G0025335.1 mouse_genomes_project 2 30366603 30371354 - Swi5 protein_coding retained_intron MGP_C3HHeJ_T0052132.1 MGP_C3HHeJ_G0025061.1 mouse_genomes_project 2 2985496 3091194 + MGP_C3HHeJ_P0052132 Upf2 protein_coding protein_coding MGP_C3HHeJ_T0052133.1 MGP_C3HHeJ_G0025061.1 mouse_genomes_project 2 3057856 3091189 + MGP_C3HHeJ_P0052133 Upf2 protein_coding protein_coding MGP_C3HHeJ_T0052134.1 MGP_C3HHeJ_G0025061.1 mouse_genomes_project 2 3084942 3089993 + Upf2 protein_coding processed_transcript MGP_C3HHeJ_T0011408.1 MGP_C3HHeJ_G0009541.1 mouse_genomes_project 2 73350362 73350529 - Gm27421 misc_RNA misc_RNA MGP_C3HHeJ_T0013358.1 MGP_C3HHeJ_G0011462.1 mouse_genomes_project 2 36809040 36809175 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056575.1 MGP_C3HHeJ_G0026064.1 mouse_genomes_project 2 121052488 121085089 - MGP_C3HHeJ_P0056575 Exd1 protein_coding protein_coding MGP_C3HHeJ_T0056576.1 MGP_C3HHeJ_G0026064.1 mouse_genomes_project 2 121052494 121078968 - MGP_C3HHeJ_P0056576 Exd1 protein_coding protein_coding MGP_C3HHeJ_T0056577.1 MGP_C3HHeJ_G0026064.1 mouse_genomes_project 2 121076306 121084656 - MGP_C3HHeJ_P0056577 Exd1 protein_coding protein_coding MGP_C3HHeJ_T0059274.1 MGP_C3HHeJ_G0026686.1 mouse_genomes_project 2 178784281 178792539 + MGP_C3HHeJ_P0059274 Tubb1 protein_coding protein_coding MGP_C3HHeJ_T0101909.1 MGP_C3HHeJ_G0039874.1 mouse_genomes_project 2 87941607 87942052 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004001.1 MGP_C3HHeJ_G0003546.1 mouse_genomes_project 2 127165387 127175279 - Gm14002 antisense antisense MGP_C3HHeJ_T0010365.1 MGP_C3HHeJ_G0008498.1 mouse_genomes_project 2 122603994 122604071 - Gm44325 miRNA miRNA MGP_C3HHeJ_T0058114.1 MGP_C3HHeJ_G0026426.1 mouse_genomes_project 2 157352442 157358286 + MGP_C3HHeJ_P0058114 Bpifa5 protein_coding protein_coding MGP_C3HHeJ_T0013717.1 MGP_C3HHeJ_G0011821.1 mouse_genomes_project 2 171001334 171001532 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010369.1 MGP_C3HHeJ_G0008502.1 mouse_genomes_project 2 128949865 128950001 - Mir3473g miRNA miRNA MGP_C3HHeJ_T0053696.1 MGP_C3HHeJ_G0025328.1 mouse_genomes_project 2 30005230 30026086 + MGP_C3HHeJ_P0053696 Aif1l protein_coding protein_coding MGP_C3HHeJ_T0053697.1 MGP_C3HHeJ_G0025328.1 mouse_genomes_project 2 30005247 30028305 + MGP_C3HHeJ_P0053697 Aif1l protein_coding protein_coding MGP_C3HHeJ_T0053698.1 MGP_C3HHeJ_G0025328.1 mouse_genomes_project 2 30005359 30024599 + Aif1l protein_coding retained_intron MGP_C3HHeJ_T0053699.1 MGP_C3HHeJ_G0025328.1 mouse_genomes_project 2 30005413 30026192 + Aif1l protein_coding retained_intron MGP_C3HHeJ_T0053700.1 MGP_C3HHeJ_G0025328.1 mouse_genomes_project 2 30015240 30025878 + Aif1l protein_coding processed_transcript MGP_C3HHeJ_T0053701.1 MGP_C3HHeJ_G0025328.1 mouse_genomes_project 2 30016221 30024595 + Aif1l protein_coding processed_transcript MGP_C3HHeJ_T0053702.1 MGP_C3HHeJ_G0025328.1 mouse_genomes_project 2 30016811 30025802 + Aif1l protein_coding retained_intron MGP_C3HHeJ_T0053703.1 MGP_C3HHeJ_G0025328.1 mouse_genomes_project 2 30018157 30025849 + Aif1l protein_coding processed_transcript MGP_C3HHeJ_T0053704.1 MGP_C3HHeJ_G0025328.1 mouse_genomes_project 2 30024168 30026009 + Aif1l protein_coding retained_intron MGP_C3HHeJ_T0053828.1 MGP_C3HHeJ_G0025343.1 mouse_genomes_project 2 30636974 30671843 + Fam102a protein_coding retained_intron MGP_C3HHeJ_T0053829.1 MGP_C3HHeJ_G0025343.1 mouse_genomes_project 2 30636975 30637833 + MGP_C3HHeJ_P0053829 Fam102a protein_coding protein_coding MGP_C3HHeJ_T0053830.1 MGP_C3HHeJ_G0025343.1 mouse_genomes_project 2 30637001 30671849 + MGP_C3HHeJ_P0053830 Fam102a protein_coding protein_coding MGP_C3HHeJ_T0053831.1 MGP_C3HHeJ_G0025343.1 mouse_genomes_project 2 30637375 30659941 + MGP_C3HHeJ_P0053831 Fam102a protein_coding protein_coding MGP_C3HHeJ_T0053832.1 MGP_C3HHeJ_G0025343.1 mouse_genomes_project 2 30641832 30661979 + Fam102a protein_coding processed_transcript MGP_C3HHeJ_T0055611.1 MGP_C3HHeJ_G0025835.1 mouse_genomes_project 2 90049479 90051171 + MGP_C3HHeJ_P0055611 protein_coding protein_coding MGP_C3HHeJ_T0055448.1 MGP_C3HHeJ_G0025698.1 mouse_genomes_project 2 86267506 86270893 - MGP_C3HHeJ_P0055448 protein_coding protein_coding MGP_C3HHeJ_T0013366.1 MGP_C3HHeJ_G0011470.1 mouse_genomes_project 2 37914144 37914736 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052284.1 MGP_C3HHeJ_G0025083.1 mouse_genomes_project 2 9412902 9609547 - MGP_C3HHeJ_P0052284 Itga8 protein_coding protein_coding MGP_C3HHeJ_T0052285.1 MGP_C3HHeJ_G0025083.1 mouse_genomes_project 2 9413749 9609517 - MGP_C3HHeJ_P0052285 Itga8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052286.1 MGP_C3HHeJ_G0025083.1 mouse_genomes_project 2 9415340 9438534 - MGP_C3HHeJ_P0052286 Itga8 protein_coding protein_coding MGP_C3HHeJ_T0052287.1 MGP_C3HHeJ_G0025083.1 mouse_genomes_project 2 9482534 9495159 - Itga8 protein_coding retained_intron MGP_C3HHeJ_T0052288.1 MGP_C3HHeJ_G0025083.1 mouse_genomes_project 2 9523207 9549426 - Itga8 protein_coding processed_transcript MGP_C3HHeJ_T0052289.1 MGP_C3HHeJ_G0025083.1 mouse_genomes_project 2 9556761 9609547 - Itga8 protein_coding retained_intron MGP_C3HHeJ_T0052290.1 MGP_C3HHeJ_G0025083.1 mouse_genomes_project 2 9594588 9609213 - Itga8 protein_coding processed_transcript MGP_C3HHeJ_T0010402.1 MGP_C3HHeJ_G0008535.1 mouse_genomes_project 2 178007902 178008021 - Mir6340 miRNA miRNA MGP_C3HHeJ_T0053118.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24660227 24661606 - Surf1 protein_coding retained_intron MGP_C3HHeJ_T0053119.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24660229 24663315 - MGP_C3HHeJ_P0053119 Surf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053120.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24660229 24663147 - MGP_C3HHeJ_P0053120 Surf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053121.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24660229 24663377 - MGP_C3HHeJ_P0053121 Surf1 protein_coding protein_coding MGP_C3HHeJ_T0053122.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24660423 24663167 - MGP_C3HHeJ_P0053122 Surf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053123.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24660423 24663192 - MGP_C3HHeJ_P0053123 Surf1 protein_coding protein_coding MGP_C3HHeJ_T0053124.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24661077 24663158 - Surf1 protein_coding retained_intron MGP_C3HHeJ_T0053125.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24661321 24662339 - Surf1 protein_coding retained_intron MGP_C3HHeJ_T0053126.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24661704 24663179 - MGP_C3HHeJ_P0053126 Surf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053127.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24662303 24663192 - MGP_C3HHeJ_P0053127 Surf1 protein_coding protein_coding MGP_C3HHeJ_T0013387.1 MGP_C3HHeJ_G0011491.1 mouse_genomes_project 2 49096303 49096585 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007282.1 MGP_C3HHeJ_G0005965.1 mouse_genomes_project 2 159770139 159772736 - Gm14225 lincRNA lincRNA MGP_C3HHeJ_T0054438.1 MGP_C3HHeJ_G0025462.1 mouse_genomes_project 2 50691663 50718947 - MGP_C3HHeJ_P0054438 Nmi protein_coding protein_coding MGP_C3HHeJ_T0054439.1 MGP_C3HHeJ_G0025462.1 mouse_genomes_project 2 50691677 50718729 - MGP_C3HHeJ_P0054439 Nmi protein_coding protein_coding MGP_C3HHeJ_T0054440.1 MGP_C3HHeJ_G0025462.1 mouse_genomes_project 2 50691681 50718741 - MGP_C3HHeJ_P0054440 Nmi protein_coding protein_coding MGP_C3HHeJ_T0054441.1 MGP_C3HHeJ_G0025462.1 mouse_genomes_project 2 50691701 50695729 - MGP_C3HHeJ_P0054441 Nmi protein_coding protein_coding MGP_C3HHeJ_T0054442.1 MGP_C3HHeJ_G0025462.1 mouse_genomes_project 2 50700662 50719204 - MGP_C3HHeJ_P0054442 Nmi protein_coding protein_coding MGP_C3HHeJ_T0054443.1 MGP_C3HHeJ_G0025462.1 mouse_genomes_project 2 50704942 50718697 - Nmi protein_coding retained_intron MGP_C3HHeJ_T0007105.1 MGP_C3HHeJ_G0005820.1 mouse_genomes_project 2 36740178 36772714 + Gm13589 lincRNA lincRNA MGP_C3HHeJ_T0003879.1 MGP_C3HHeJ_G0003462.1 mouse_genomes_project 2 30961511 30963494 + Gm13524 antisense antisense MGP_C3HHeJ_T0004060.1 MGP_C3HHeJ_G0003589.1 mouse_genomes_project 2 157849856 157852538 - Gm14198 antisense antisense MGP_C3HHeJ_T0007116.1 MGP_C3HHeJ_G0005830.1 mouse_genomes_project 2 49916798 49917279 + Gm28639 lincRNA lincRNA MGP_C3HHeJ_T0017674.1 MGP_C3HHeJ_G0015246.1 mouse_genomes_project 2 161564637 161565389 + Gm20412 processed_transcript processed_transcript MGP_C3HHeJ_T0010361.1 MGP_C3HHeJ_G0008494.1 mouse_genomes_project 2 116990135 116990224 + Mir1951 miRNA miRNA MGP_C3HHeJ_T0057125.1 MGP_C3HHeJ_G0026169.1 mouse_genomes_project 2 129200405 129205054 - MGP_C3HHeJ_P0057125 Itpripl1 protein_coding protein_coding MGP_C3HHeJ_T0057126.1 MGP_C3HHeJ_G0026169.1 mouse_genomes_project 2 129202020 129204917 - MGP_C3HHeJ_P0057126 Itpripl1 protein_coding protein_coding MGP_C3HHeJ_T0057127.1 MGP_C3HHeJ_G0026169.1 mouse_genomes_project 2 129202140 129204202 - MGP_C3HHeJ_P0057127 Itpripl1 protein_coding protein_coding MGP_C3HHeJ_T0056652.1 MGP_C3HHeJ_G0026080.1 mouse_genomes_project 2 121662459 121730119 - MGP_C3HHeJ_P0056652 Ehd4 protein_coding protein_coding MGP_C3HHeJ_T0056653.1 MGP_C3HHeJ_G0026080.1 mouse_genomes_project 2 121675987 121704224 - Ehd4 protein_coding processed_transcript MGP_C3HHeJ_T0056654.1 MGP_C3HHeJ_G0026080.1 mouse_genomes_project 2 121676172 121712073 - Ehd4 protein_coding processed_transcript MGP_C3HHeJ_T0056655.1 MGP_C3HHeJ_G0026080.1 mouse_genomes_project 2 121696906 121729972 - Ehd4 protein_coding processed_transcript MGP_C3HHeJ_T0053308.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27062021 27120582 - MGP_C3HHeJ_P0053308 Ntng2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053309.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27062274 27120556 - MGP_C3HHeJ_P0053309 Ntng2 protein_coding protein_coding MGP_C3HHeJ_T0053310.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27062301 27120497 - MGP_C3HHeJ_P0053310 Ntng2 protein_coding protein_coding MGP_C3HHeJ_T0053311.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27062301 27120497 - MGP_C3HHeJ_P0053311 Ntng2 protein_coding protein_coding MGP_C3HHeJ_T0053312.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27062301 27120497 - MGP_C3HHeJ_P0053312 Ntng2 protein_coding protein_coding MGP_C3HHeJ_T0053313.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27065948 27071482 - Ntng2 protein_coding processed_transcript MGP_C3HHeJ_T0053314.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27066121 27072380 - Ntng2 protein_coding processed_transcript MGP_C3HHeJ_T0053315.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27068019 27071482 - Ntng2 protein_coding processed_transcript MGP_C3HHeJ_T0053316.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27068133 27072380 - Ntng2 protein_coding processed_transcript MGP_C3HHeJ_T0053317.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27071279 27125462 - MGP_C3HHeJ_P0053317 Ntng2 protein_coding protein_coding MGP_C3HHeJ_T0053318.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27101104 27120589 - Ntng2 protein_coding processed_transcript MGP_C3HHeJ_T0003940.1 MGP_C3HHeJ_G0003506.1 mouse_genomes_project 2 72932234 72939466 + Gm13707 antisense antisense MGP_C3HHeJ_T0055709.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91398844 91408504 - MGP_C3HHeJ_P0055709 Slc39a13 protein_coding protein_coding MGP_C3HHeJ_T0055710.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91398844 91408316 - MGP_C3HHeJ_P0055710 Slc39a13 protein_coding protein_coding MGP_C3HHeJ_T0055711.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91399927 91408370 - MGP_C3HHeJ_P0055711 Slc39a13 protein_coding protein_coding MGP_C3HHeJ_T0055712.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91400175 91402500 - Slc39a13 protein_coding processed_transcript MGP_C3HHeJ_T0055713.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91400178 91401440 - Slc39a13 protein_coding processed_transcript MGP_C3HHeJ_T0055714.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91400458 91408385 - Slc39a13 protein_coding processed_transcript MGP_C3HHeJ_T0055715.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91401694 91403230 - Slc39a13 protein_coding processed_transcript MGP_C3HHeJ_T0055716.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91402634 91408326 - Slc39a13 protein_coding processed_transcript MGP_C3HHeJ_T0055717.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91403099 91408274 - MGP_C3HHeJ_P0055717 Slc39a13 protein_coding protein_coding MGP_C3HHeJ_T0055718.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91406517 91406958 - Slc39a13 protein_coding processed_transcript MGP_C3HHeJ_T0055719.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91407204 91408326 - Slc39a13 protein_coding processed_transcript MGP_C3HHeJ_T0054963.1 MGP_C3HHeJ_G0025557.1 mouse_genomes_project 2 70953597 70956943 - MGP_C3HHeJ_P0054963 Dlx2 protein_coding protein_coding MGP_C3HHeJ_T0054964.1 MGP_C3HHeJ_G0025557.1 mouse_genomes_project 2 70955054 70956139 - Dlx2 protein_coding retained_intron MGP_C3HHeJ_T0056754.1 MGP_C3HHeJ_G0026094.1 mouse_genomes_project 2 122360629 122468821 - MGP_C3HHeJ_P0056754 Ttbk2 protein_coding protein_coding MGP_C3HHeJ_T0056755.1 MGP_C3HHeJ_G0026094.1 mouse_genomes_project 2 122360629 122468635 - MGP_C3HHeJ_P0056755 Ttbk2 protein_coding protein_coding MGP_C3HHeJ_T0056756.1 MGP_C3HHeJ_G0026094.1 mouse_genomes_project 2 122360629 122468621 - MGP_C3HHeJ_P0056756 Ttbk2 protein_coding protein_coding MGP_C3HHeJ_T0056757.1 MGP_C3HHeJ_G0026094.1 mouse_genomes_project 2 122373473 122468605 - MGP_C3HHeJ_P0056757 Ttbk2 protein_coding protein_coding MGP_C3HHeJ_T0056758.1 MGP_C3HHeJ_G0026094.1 mouse_genomes_project 2 122379739 122468579 - MGP_C3HHeJ_P0056758 Ttbk2 protein_coding protein_coding MGP_C3HHeJ_T0056759.1 MGP_C3HHeJ_G0026094.1 mouse_genomes_project 2 122421174 122468652 - Ttbk2 protein_coding processed_transcript MGP_C3HHeJ_T0055456.1 MGP_C3HHeJ_G0025705.1 mouse_genomes_project 2 86625003 86625936 - MGP_C3HHeJ_P0055456 Olfr1086 protein_coding protein_coding MGP_C3HHeJ_T0007178.1 MGP_C3HHeJ_G0005883.1 mouse_genomes_project 2 92959753 92971137 - Gm13817 lincRNA lincRNA MGP_C3HHeJ_T0010304.1 MGP_C3HHeJ_G0008437.1 mouse_genomes_project 2 26563016 26563090 + Mir3088 miRNA miRNA MGP_C3HHeJ_T0056358.1 MGP_C3HHeJ_G0026008.1 mouse_genomes_project 2 113592012 113599011 - MGP_C3HHeJ_P0056358 Emc4 protein_coding protein_coding MGP_C3HHeJ_T0056359.1 MGP_C3HHeJ_G0026008.1 mouse_genomes_project 2 113593999 113599004 - Emc4 protein_coding processed_transcript MGP_C3HHeJ_T0057193.1 MGP_C3HHeJ_G0026188.1 mouse_genomes_project 2 129880246 129912428 - MGP_C3HHeJ_P0057193 Bub1 protein_coding protein_coding MGP_C3HHeJ_T0057194.1 MGP_C3HHeJ_G0026188.1 mouse_genomes_project 2 129883629 129884392 - Bub1 protein_coding retained_intron MGP_C3HHeJ_T0057195.1 MGP_C3HHeJ_G0026188.1 mouse_genomes_project 2 129888601 129893976 - Bub1 protein_coding processed_transcript MGP_C3HHeJ_T0057196.1 MGP_C3HHeJ_G0026188.1 mouse_genomes_project 2 129890648 129895025 - Bub1 protein_coding processed_transcript MGP_C3HHeJ_T0057197.1 MGP_C3HHeJ_G0026188.1 mouse_genomes_project 2 129904239 129912367 - Bub1 protein_coding retained_intron MGP_C3HHeJ_T0100502.1 MGP_C3HHeJ_G0038696.1 mouse_genomes_project 2 161138929 161139063 - Gm25407 snoRNA snoRNA MGP_C3HHeJ_T0056007.1 MGP_C3HHeJ_G0025905.1 mouse_genomes_project 2 94521407 94556060 - Hsd17b12 protein_coding processed_transcript MGP_C3HHeJ_T0056008.1 MGP_C3HHeJ_G0025905.1 mouse_genomes_project 2 94521407 94648645 - MGP_C3HHeJ_P0056008 Hsd17b12 protein_coding protein_coding MGP_C3HHeJ_T0056009.1 MGP_C3HHeJ_G0025905.1 mouse_genomes_project 2 94521420 94648590 - Hsd17b12 protein_coding processed_transcript MGP_C3HHeJ_T0056010.1 MGP_C3HHeJ_G0025905.1 mouse_genomes_project 2 94522238 94556355 - Hsd17b12 protein_coding processed_transcript MGP_C3HHeJ_T0056011.1 MGP_C3HHeJ_G0025905.1 mouse_genomes_project 2 94604974 94648574 - Hsd17b12 protein_coding processed_transcript MGP_C3HHeJ_T0052802.1 MGP_C3HHeJ_G0025175.1 mouse_genomes_project 2 23023425 23029219 - MGP_C3HHeJ_P0052802 Uap1l1 protein_coding protein_coding MGP_C3HHeJ_T0052803.1 MGP_C3HHeJ_G0025175.1 mouse_genomes_project 2 23025025 23026267 - Uap1l1 protein_coding processed_transcript MGP_C3HHeJ_T0052804.1 MGP_C3HHeJ_G0025175.1 mouse_genomes_project 2 23025026 23027235 - Uap1l1 protein_coding processed_transcript MGP_C3HHeJ_T0052805.1 MGP_C3HHeJ_G0025175.1 mouse_genomes_project 2 23025030 23027665 - Uap1l1 protein_coding processed_transcript MGP_C3HHeJ_T0052806.1 MGP_C3HHeJ_G0025175.1 mouse_genomes_project 2 23026879 23028194 - Uap1l1 protein_coding processed_transcript MGP_C3HHeJ_T0052807.1 MGP_C3HHeJ_G0025175.1 mouse_genomes_project 2 23027654 23029152 - Uap1l1 protein_coding processed_transcript MGP_C3HHeJ_T0053039.1 MGP_C3HHeJ_G0025221.1 mouse_genomes_project 2 24128087 24135871 + MGP_C3HHeJ_P0053039 Pmpca protein_coding protein_coding MGP_C3HHeJ_T0053040.1 MGP_C3HHeJ_G0025221.1 mouse_genomes_project 2 24128096 24132690 + MGP_C3HHeJ_P0053040 Pmpca protein_coding protein_coding MGP_C3HHeJ_T0053041.1 MGP_C3HHeJ_G0025221.1 mouse_genomes_project 2 24128102 24129044 + Pmpca protein_coding processed_transcript MGP_C3HHeJ_T0053042.1 MGP_C3HHeJ_G0025221.1 mouse_genomes_project 2 24128102 24128951 + Pmpca protein_coding processed_transcript MGP_C3HHeJ_T0053043.1 MGP_C3HHeJ_G0025221.1 mouse_genomes_project 2 24128104 24130715 + Pmpca protein_coding processed_transcript MGP_C3HHeJ_T0053044.1 MGP_C3HHeJ_G0025221.1 mouse_genomes_project 2 24129675 24131147 + Pmpca protein_coding processed_transcript MGP_C3HHeJ_T0059282.1 MGP_C3HHeJ_G0026689.1 mouse_genomes_project 2 178982440 179055416 + MGP_C3HHeJ_P0059282 Zfp831 protein_coding protein_coding MGP_C3HHeJ_T0017585.1 MGP_C3HHeJ_G0015204.1 mouse_genomes_project 2 91380135 91389908 - Gm13778 processed_transcript processed_transcript MGP_C3HHeJ_T0017586.1 MGP_C3HHeJ_G0015204.1 mouse_genomes_project 2 91380438 91389923 - Gm13778 processed_transcript processed_transcript MGP_C3HHeJ_T0013368.1 MGP_C3HHeJ_G0011472.1 mouse_genomes_project 2 38020566 38020686 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013559.1 MGP_C3HHeJ_G0011663.1 mouse_genomes_project 2 107788123 107788593 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055415.1 MGP_C3HHeJ_G0025666.1 mouse_genomes_project 2 85548466 85549402 - MGP_C3HHeJ_P0055415 Olfr1012 protein_coding protein_coding MGP_C3HHeJ_T0007267.1 MGP_C3HHeJ_G0005954.1 mouse_genomes_project 2 150778357 150814453 - 9030622O22Rik lincRNA lincRNA MGP_C3HHeJ_T0007268.1 MGP_C3HHeJ_G0005954.1 mouse_genomes_project 2 150811005 150885777 - 9030622O22Rik lincRNA lincRNA MGP_C3HHeJ_T0007269.1 MGP_C3HHeJ_G0005954.1 mouse_genomes_project 2 150811159 150883846 - 9030622O22Rik lincRNA lincRNA MGP_C3HHeJ_T0058595.1 MGP_C3HHeJ_G0026512.1 mouse_genomes_project 2 161993060 161998643 + MGP_C3HHeJ_P0058595 Adig protein_coding protein_coding MGP_C3HHeJ_T0058596.1 MGP_C3HHeJ_G0026512.1 mouse_genomes_project 2 161993101 161998643 + MGP_C3HHeJ_P0058596 Adig protein_coding protein_coding MGP_C3HHeJ_T0058597.1 MGP_C3HHeJ_G0026512.1 mouse_genomes_project 2 161993187 161996354 + Adig protein_coding processed_transcript MGP_C3HHeJ_T0053319.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27218175 27407083 + MGP_C3HHeJ_P0053319 Med27 protein_coding protein_coding MGP_C3HHeJ_T0053320.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27218189 27359856 + MGP_C3HHeJ_P0053320 Med27 protein_coding protein_coding MGP_C3HHeJ_T0053321.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27249824 27391753 + MGP_C3HHeJ_P0053321 Med27 protein_coding protein_coding MGP_C3HHeJ_T0053322.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27249824 27381741 + MGP_C3HHeJ_P0053322 Med27 protein_coding protein_coding MGP_C3HHeJ_T0053323.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27250498 27381638 + MGP_C3HHeJ_P0053323 Med27 protein_coding protein_coding MGP_C3HHeJ_T0053324.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27250517 27406845 + MGP_C3HHeJ_P0053324 Med27 protein_coding protein_coding MGP_C3HHeJ_T0053325.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27250589 27359052 + MGP_C3HHeJ_P0053325 Med27 protein_coding protein_coding MGP_C3HHeJ_T0053326.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27263327 27405141 + Med27 protein_coding processed_transcript MGP_C3HHeJ_T0053327.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27377933 27381963 + Med27 protein_coding retained_intron MGP_C3HHeJ_T0053328.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27387157 27406971 + Med27 protein_coding processed_transcript MGP_C3HHeJ_T0058788.1 MGP_C3HHeJ_G0026568.1 mouse_genomes_project 2 168148232 168167155 - MGP_C3HHeJ_P0058788 Sdc4 protein_coding protein_coding MGP_C3HHeJ_T0058789.1 MGP_C3HHeJ_G0026568.1 mouse_genomes_project 2 168149880 168167856 - Sdc4 protein_coding processed_transcript MGP_C3HHeJ_T0055572.1 MGP_C3HHeJ_G0025806.1 mouse_genomes_project 2 89226187 89227123 - MGP_C3HHeJ_P0055572 Olfr1218 protein_coding protein_coding MGP_C3HHeJ_T0055224.1 MGP_C3HHeJ_G0025610.1 mouse_genomes_project 2 79143922 79148152 - MGP_C3HHeJ_P0055224 Neurod1 protein_coding protein_coding MGP_C3HHeJ_T0058523.1 MGP_C3HHeJ_G0026498.1 mouse_genomes_project 2 160777195 160809262 + MGP_C3HHeJ_P0058523 Manbal protein_coding protein_coding MGP_C3HHeJ_T0059198.1 MGP_C3HHeJ_G0026667.1 mouse_genomes_project 2 177130900 177204353 - MGP_C3HHeJ_P0059198 Bmp7 protein_coding protein_coding MGP_C3HHeJ_T0059199.1 MGP_C3HHeJ_G0026667.1 mouse_genomes_project 2 177180244 177204124 - Bmp7 protein_coding retained_intron MGP_C3HHeJ_T0055138.1 MGP_C3HHeJ_G0025601.1 mouse_genomes_project 2 76278273 76300275 + MGP_C3HHeJ_P0055138 Plekha3 protein_coding protein_coding MGP_C3HHeJ_T0055139.1 MGP_C3HHeJ_G0025601.1 mouse_genomes_project 2 76293293 76296211 + Plekha3 protein_coding processed_transcript MGP_C3HHeJ_T0007092.1 MGP_C3HHeJ_G0005811.1 mouse_genomes_project 2 31877824 31880374 - 9430024E24Rik lincRNA lincRNA MGP_C3HHeJ_T0057441.1 MGP_C3HHeJ_G0026247.1 mouse_genomes_project 2 133451877 133465763 + MGP_C3HHeJ_P0057441 Mavs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057442.1 MGP_C3HHeJ_G0026247.1 mouse_genomes_project 2 133451881 133465766 + MGP_C3HHeJ_P0057442 Mavs protein_coding protein_coding MGP_C3HHeJ_T0057443.1 MGP_C3HHeJ_G0026247.1 mouse_genomes_project 2 133451919 133465766 + MGP_C3HHeJ_P0057443 Mavs protein_coding protein_coding MGP_C3HHeJ_T0057444.1 MGP_C3HHeJ_G0026247.1 mouse_genomes_project 2 133459679 133463406 + Mavs protein_coding processed_transcript MGP_C3HHeJ_T0098108.1 MGP_C3HHeJ_G0036320.1 mouse_genomes_project 2 113696908 113697022 - n-R5s202 rRNA rRNA MGP_C3HHeJ_T0056460.1 MGP_C3HHeJ_G0026035.1 mouse_genomes_project 2 119958904 119962023 - MGP_C3HHeJ_P0056460 Srp14 protein_coding protein_coding MGP_C3HHeJ_T0056461.1 MGP_C3HHeJ_G0026035.1 mouse_genomes_project 2 119958905 119961156 - Srp14 protein_coding processed_transcript MGP_C3HHeJ_T0056462.1 MGP_C3HHeJ_G0026035.1 mouse_genomes_project 2 119958915 119961960 - Srp14 protein_coding processed_transcript MGP_C3HHeJ_T0056463.1 MGP_C3HHeJ_G0026035.1 mouse_genomes_project 2 119960837 119961947 - MGP_C3HHeJ_P0056463 Srp14 protein_coding protein_coding MGP_C3HHeJ_T0013642.1 MGP_C3HHeJ_G0011746.1 mouse_genomes_project 2 146561844 146562175 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100436.1 MGP_C3HHeJ_G0038630.1 mouse_genomes_project 2 24386898 24387030 - Snora17 snoRNA snoRNA MGP_C3HHeJ_T0003961.1 MGP_C3HHeJ_G0003520.1 mouse_genomes_project 2 89078287 89086486 - Gm13763 antisense antisense MGP_C3HHeJ_T0013440.1 MGP_C3HHeJ_G0011544.1 mouse_genomes_project 2 67012736 67012819 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007168.1 MGP_C3HHeJ_G0005873.1 mouse_genomes_project 2 79145386 79152499 + Gm26755 lincRNA lincRNA MGP_C3HHeJ_T0057606.1 MGP_C3HHeJ_G0026280.1 mouse_genomes_project 2 139301827 139482578 + MGP_C3HHeJ_P0057606 Slx4ip protein_coding protein_coding MGP_C3HHeJ_T0057607.1 MGP_C3HHeJ_G0026280.1 mouse_genomes_project 2 139302110 139411803 + MGP_C3HHeJ_P0057607 Slx4ip protein_coding protein_coding MGP_C3HHeJ_T0057608.1 MGP_C3HHeJ_G0026280.1 mouse_genomes_project 2 139302217 139485087 + Slx4ip protein_coding processed_transcript MGP_C3HHeJ_T0057609.1 MGP_C3HHeJ_G0026280.1 mouse_genomes_project 2 139302777 139481196 + Slx4ip protein_coding processed_transcript MGP_C3HHeJ_T0057610.1 MGP_C3HHeJ_G0026280.1 mouse_genomes_project 2 139302777 139485087 + MGP_C3HHeJ_P0057610 Slx4ip protein_coding protein_coding MGP_C3HHeJ_T0057611.1 MGP_C3HHeJ_G0026280.1 mouse_genomes_project 2 139316538 139482707 + MGP_C3HHeJ_P0057611 Slx4ip protein_coding protein_coding MGP_C3HHeJ_T0100441.1 MGP_C3HHeJ_G0038635.1 mouse_genomes_project 2 30300261 30300346 + Gm22192 snoRNA snoRNA MGP_C3HHeJ_T0013499.1 MGP_C3HHeJ_G0011603.1 mouse_genomes_project 2 87211478 87212940 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053252.1 MGP_C3HHeJ_G0025261.1 mouse_genomes_project 2 26393130 26411325 - MGP_C3HHeJ_P0053252 Gtf3c5 protein_coding protein_coding MGP_C3HHeJ_T0053253.1 MGP_C3HHeJ_G0025261.1 mouse_genomes_project 2 26393130 26411235 - MGP_C3HHeJ_P0053253 Gtf3c5 protein_coding protein_coding MGP_C3HHeJ_T0053254.1 MGP_C3HHeJ_G0025261.1 mouse_genomes_project 2 26395574 26399411 - Gtf3c5 protein_coding retained_intron MGP_C3HHeJ_T0053255.1 MGP_C3HHeJ_G0025261.1 mouse_genomes_project 2 26400469 26402145 - Gtf3c5 protein_coding retained_intron MGP_C3HHeJ_T0053256.1 MGP_C3HHeJ_G0025261.1 mouse_genomes_project 2 26407276 26411313 - Gtf3c5 protein_coding retained_intron MGP_C3HHeJ_T0053257.1 MGP_C3HHeJ_G0025261.1 mouse_genomes_project 2 26407809 26411034 - MGP_C3HHeJ_P0053257 Gtf3c5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053258.1 MGP_C3HHeJ_G0025261.1 mouse_genomes_project 2 26411050 26411797 - Gtf3c5 protein_coding processed_transcript MGP_C3HHeJ_T0053804.1 MGP_C3HHeJ_G0025338.1 mouse_genomes_project 2 30468763 30473532 - MGP_C3HHeJ_P0053804 1110008P14Rik protein_coding protein_coding MGP_C3HHeJ_T0053805.1 MGP_C3HHeJ_G0025338.1 mouse_genomes_project 2 30470770 30473608 - MGP_C3HHeJ_P0053805 1110008P14Rik protein_coding protein_coding MGP_C3HHeJ_T0013296.1 MGP_C3HHeJ_G0011400.1 mouse_genomes_project 2 14593784 14594590 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053464.1 MGP_C3HHeJ_G0025293.1 mouse_genomes_project 2 28129345 28154748 - MGP_C3HHeJ_P0053464 Kyat1 protein_coding protein_coding MGP_C3HHeJ_T0053465.1 MGP_C3HHeJ_G0025293.1 mouse_genomes_project 2 28129347 28154717 - Kyat1 protein_coding processed_transcript MGP_C3HHeJ_T0053466.1 MGP_C3HHeJ_G0025293.1 mouse_genomes_project 2 28129347 28154676 - MGP_C3HHeJ_P0053466 Kyat1 protein_coding protein_coding MGP_C3HHeJ_T0053467.1 MGP_C3HHeJ_G0025293.1 mouse_genomes_project 2 28129352 28143000 - MGP_C3HHeJ_P0053467 Kyat1 protein_coding protein_coding MGP_C3HHeJ_T0053468.1 MGP_C3HHeJ_G0025293.1 mouse_genomes_project 2 28129352 28154702 - MGP_C3HHeJ_P0053468 Kyat1 protein_coding protein_coding MGP_C3HHeJ_T0053469.1 MGP_C3HHeJ_G0025293.1 mouse_genomes_project 2 28129489 28138338 - MGP_C3HHeJ_P0053469 Kyat1 protein_coding protein_coding MGP_C3HHeJ_T0053470.1 MGP_C3HHeJ_G0025293.1 mouse_genomes_project 2 28129489 28138338 - MGP_C3HHeJ_P0053470 Kyat1 protein_coding protein_coding MGP_C3HHeJ_T0053471.1 MGP_C3HHeJ_G0025293.1 mouse_genomes_project 2 28135343 28154690 - Kyat1 protein_coding processed_transcript MGP_C3HHeJ_T0055548.1 MGP_C3HHeJ_G0025784.1 mouse_genomes_project 2 88698211 88699132 + MGP_C3HHeJ_P0055548 Olfr1189 protein_coding protein_coding MGP_C3HHeJ_T0013462.1 MGP_C3HHeJ_G0011566.1 mouse_genomes_project 2 74422050 74422685 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056519.1 MGP_C3HHeJ_G0026048.1 mouse_genomes_project 2 120528713 120540919 - MGP_C3HHeJ_P0056519 Ccdc32 protein_coding protein_coding MGP_C3HHeJ_T0056520.1 MGP_C3HHeJ_G0026048.1 mouse_genomes_project 2 120532654 120540919 - MGP_C3HHeJ_P0056520 Ccdc32 protein_coding protein_coding MGP_C3HHeJ_T0056521.1 MGP_C3HHeJ_G0026048.1 mouse_genomes_project 2 120532725 120540903 - MGP_C3HHeJ_P0056521 Ccdc32 protein_coding protein_coding MGP_C3HHeJ_T0013483.1 MGP_C3HHeJ_G0011587.1 mouse_genomes_project 2 81921026 81921621 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013432.1 MGP_C3HHeJ_G0011536.1 mouse_genomes_project 2 63974948 63975452 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052459.1 MGP_C3HHeJ_G0025111.1 mouse_genomes_project 2 16348712 16507610 - MGP_C3HHeJ_P0052459 Pip4k2a protein_coding protein_coding MGP_C3HHeJ_T0052460.1 MGP_C3HHeJ_G0025111.1 mouse_genomes_project 2 16350828 16374047 - MGP_C3HHeJ_P0052460 Pip4k2a protein_coding protein_coding MGP_C3HHeJ_T0052461.1 MGP_C3HHeJ_G0025111.1 mouse_genomes_project 2 16353954 16413687 - MGP_C3HHeJ_P0052461 Pip4k2a protein_coding protein_coding MGP_C3HHeJ_T0010396.1 MGP_C3HHeJ_G0008529.1 mouse_genomes_project 2 171588965 171589061 - Gm22355 miRNA miRNA MGP_C3HHeJ_T0055606.1 MGP_C3HHeJ_G0025831.1 mouse_genomes_project 2 89954497 89955641 - MGP_C3HHeJ_P0055606 protein_coding protein_coding MGP_C3HHeJ_T0056141.1 MGP_C3HHeJ_G0025930.1 mouse_genomes_project 2 104697055 104751566 - 4931422A03Rik protein_coding processed_transcript MGP_C3HHeJ_T0056148.1 MGP_C3HHeJ_G0025930.1 mouse_genomes_project 2 104722605 104752075 - MGP_C3HHeJ_P0056148 4931422A03Rik protein_coding protein_coding MGP_C3HHeJ_T0056149.1 MGP_C3HHeJ_G0025930.1 mouse_genomes_project 2 104749666 104752128 - 4931422A03Rik protein_coding retained_intron MGP_C3HHeJ_T0053976.1 MGP_C3HHeJ_G0025367.1 mouse_genomes_project 2 31544325 31572685 - MGP_C3HHeJ_P0053976 Zbtb34 protein_coding protein_coding MGP_C3HHeJ_T0053977.1 MGP_C3HHeJ_G0025367.1 mouse_genomes_project 2 31544325 31569583 - MGP_C3HHeJ_P0053977 Zbtb34 protein_coding protein_coding MGP_C3HHeJ_T0053978.1 MGP_C3HHeJ_G0025367.1 mouse_genomes_project 2 31550136 31572678 - Zbtb34 protein_coding processed_transcript MGP_C3HHeJ_T0010337.1 MGP_C3HHeJ_G0008470.1 mouse_genomes_project 2 74248620 74248688 + Mir10b miRNA miRNA MGP_C3HHeJ_T0056792.1 MGP_C3HHeJ_G0026102.1 mouse_genomes_project 2 122771984 122776696 + Adal protein_coding retained_intron MGP_C3HHeJ_T0056793.1 MGP_C3HHeJ_G0026102.1 mouse_genomes_project 2 122771995 122790152 + MGP_C3HHeJ_P0056793 Adal protein_coding protein_coding MGP_C3HHeJ_T0056794.1 MGP_C3HHeJ_G0026102.1 mouse_genomes_project 2 122772000 122776694 + Adal protein_coding retained_intron MGP_C3HHeJ_T0056795.1 MGP_C3HHeJ_G0026102.1 mouse_genomes_project 2 122772009 122782852 + Adal protein_coding processed_transcript MGP_C3HHeJ_T0056796.1 MGP_C3HHeJ_G0026102.1 mouse_genomes_project 2 122772055 122789063 + MGP_C3HHeJ_P0056796 Adal protein_coding protein_coding MGP_C3HHeJ_T0056797.1 MGP_C3HHeJ_G0026102.1 mouse_genomes_project 2 122772077 122783040 + Adal protein_coding retained_intron MGP_C3HHeJ_T0056798.1 MGP_C3HHeJ_G0026102.1 mouse_genomes_project 2 122773448 122790158 + MGP_C3HHeJ_P0056798 Adal protein_coding protein_coding MGP_C3HHeJ_T0056799.1 MGP_C3HHeJ_G0026102.1 mouse_genomes_project 2 122782615 122789813 + Adal protein_coding retained_intron MGP_C3HHeJ_T0013697.1 MGP_C3HHeJ_G0011801.1 mouse_genomes_project 2 161881294 161881583 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054093.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33408116 33428672 - MGP_C3HHeJ_P0054093 Rab14 protein_coding protein_coding MGP_C3HHeJ_T0054094.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33408116 33428672 - MGP_C3HHeJ_P0054094 Rab14 protein_coding protein_coding MGP_C3HHeJ_T0054095.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33409709 33411631 - Rab14 protein_coding processed_transcript MGP_C3HHeJ_T0054096.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33410770 33411729 - Rab14 protein_coding processed_transcript MGP_C3HHeJ_T0054097.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33411183 33428524 - Rab14 protein_coding retained_intron MGP_C3HHeJ_T0054098.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33413865 33420244 - Rab14 protein_coding processed_transcript MGP_C3HHeJ_T0054099.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33415286 33419003 - Rab14 protein_coding retained_intron MGP_C3HHeJ_T0054100.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33417480 33428341 - Rab14 protein_coding processed_transcript MGP_C3HHeJ_T0054101.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33419101 33420424 - Rab14 protein_coding processed_transcript MGP_C3HHeJ_T0054102.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33423560 33428534 - Rab14 protein_coding retained_intron MGP_C3HHeJ_T0054103.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33427425 33428530 - Rab14 protein_coding processed_transcript MGP_C3HHeJ_T0101876.1 MGP_C3HHeJ_G0039841.1 mouse_genomes_project 2 34565550 34566456 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013650.1 MGP_C3HHeJ_G0011754.1 mouse_genomes_project 2 148648110 148648725 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058753.1 MGP_C3HHeJ_G0026552.1 mouse_genomes_project 2 167744001 167756955 - Tomm34 protein_coding retained_intron MGP_C3HHeJ_T0058754.1 MGP_C3HHeJ_G0026552.1 mouse_genomes_project 2 167744001 167764326 - MGP_C3HHeJ_P0058754 Tomm34 protein_coding protein_coding MGP_C3HHeJ_T0058755.1 MGP_C3HHeJ_G0026552.1 mouse_genomes_project 2 167744001 167764259 - MGP_C3HHeJ_P0058755 Tomm34 protein_coding protein_coding MGP_C3HHeJ_T0001056.1 MGP_C3HHeJ_G0000993.1 mouse_genomes_project 2 74911976 74912571 - TEC TEC MGP_C3HHeJ_T0052387.1 MGP_C3HHeJ_G0025100.1 mouse_genomes_project 2 12946801 13669135 + MGP_C3HHeJ_P0052387 Malrd1 protein_coding protein_coding MGP_C3HHeJ_T0004120.1 MGP_C3HHeJ_G0003634.1 mouse_genomes_project 2 186192744 186199388 + Uckl1os antisense antisense MGP_C3HHeJ_T0004121.1 MGP_C3HHeJ_G0003634.1 mouse_genomes_project 2 186192749 186194956 + Uckl1os antisense antisense MGP_C3HHeJ_T0004122.1 MGP_C3HHeJ_G0003634.1 mouse_genomes_project 2 186192782 186194967 + Uckl1os antisense antisense MGP_C3HHeJ_T0004123.1 MGP_C3HHeJ_G0003634.1 mouse_genomes_project 2 186193753 186195246 + Uckl1os antisense antisense MGP_C3HHeJ_T0004124.1 MGP_C3HHeJ_G0003634.1 mouse_genomes_project 2 186193796 186196420 + Uckl1os antisense antisense MGP_C3HHeJ_T0004125.1 MGP_C3HHeJ_G0003634.1 mouse_genomes_project 2 186193862 186195479 + Uckl1os antisense antisense MGP_C3HHeJ_T0004126.1 MGP_C3HHeJ_G0003634.1 mouse_genomes_project 2 186196510 186199439 + Uckl1os antisense antisense MGP_C3HHeJ_T0013704.1 MGP_C3HHeJ_G0011808.1 mouse_genomes_project 2 165090315 165090791 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013443.1 MGP_C3HHeJ_G0011547.1 mouse_genomes_project 2 68641570 68642072 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052034.1 MGP_C3HHeJ_G0025045.1 mouse_genomes_project 2 593009 766544 + MGP_C3HHeJ_P0052034 Fam107b protein_coding protein_coding MGP_C3HHeJ_T0052035.1 MGP_C3HHeJ_G0025045.1 mouse_genomes_project 2 695550 768899 + MGP_C3HHeJ_P0052035 Fam107b protein_coding protein_coding MGP_C3HHeJ_T0052036.1 MGP_C3HHeJ_G0025045.1 mouse_genomes_project 2 695570 766678 + MGP_C3HHeJ_P0052036 Fam107b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052037.1 MGP_C3HHeJ_G0025045.1 mouse_genomes_project 2 756162 758426 + MGP_C3HHeJ_P0052037 Fam107b protein_coding protein_coding MGP_C3HHeJ_T0052038.1 MGP_C3HHeJ_G0025045.1 mouse_genomes_project 2 756188 768897 + MGP_C3HHeJ_P0052038 Fam107b protein_coding protein_coding MGP_C3HHeJ_T0052039.1 MGP_C3HHeJ_G0025045.1 mouse_genomes_project 2 759400 766382 + MGP_C3HHeJ_P0052039 Fam107b protein_coding protein_coding MGP_C3HHeJ_T0007294.1 MGP_C3HHeJ_G0005975.1 mouse_genomes_project 2 164768797 164808551 + Gm14243 lincRNA lincRNA MGP_C3HHeJ_T0013434.1 MGP_C3HHeJ_G0011538.1 mouse_genomes_project 2 64427027 64428219 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055995.1 MGP_C3HHeJ_G0025903.1 mouse_genomes_project 2 94445452 94481455 - MGP_C3HHeJ_P0055995 Gm27027 protein_coding protein_coding MGP_C3HHeJ_T0007208.1 MGP_C3HHeJ_G0005906.1 mouse_genomes_project 2 112003918 112010228 - Gm13942 lincRNA lincRNA MGP_C3HHeJ_T0017668.1 MGP_C3HHeJ_G0015243.1 mouse_genomes_project 2 159934117 159939370 - Gm14169 processed_transcript processed_transcript MGP_C3HHeJ_T0055292.1 MGP_C3HHeJ_G0025628.1 mouse_genomes_project 2 84072193 84171846 - MGP_C3HHeJ_P0055292 Calcrl protein_coding protein_coding MGP_C3HHeJ_T0055293.1 MGP_C3HHeJ_G0025628.1 mouse_genomes_project 2 84072226 84119493 - MGP_C3HHeJ_P0055293 Calcrl protein_coding protein_coding MGP_C3HHeJ_T0055294.1 MGP_C3HHeJ_G0025628.1 mouse_genomes_project 2 84119429 84171701 - Calcrl protein_coding processed_transcript MGP_C3HHeJ_T0053898.1 MGP_C3HHeJ_G0025355.1 mouse_genomes_project 2 30870649 30888788 - MGP_C3HHeJ_P0053898 Ttc16 protein_coding protein_coding MGP_C3HHeJ_T0053907.1 MGP_C3HHeJ_G0025355.1 mouse_genomes_project 2 30875573 30888989 - MGP_C3HHeJ_P0053907 Ttc16 protein_coding protein_coding MGP_C3HHeJ_T0053908.1 MGP_C3HHeJ_G0025355.1 mouse_genomes_project 2 30875736 30888842 - MGP_C3HHeJ_P0053908 Ttc16 protein_coding protein_coding MGP_C3HHeJ_T0053909.1 MGP_C3HHeJ_G0025355.1 mouse_genomes_project 2 30877524 30889038 - MGP_C3HHeJ_P0053909 Ttc16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053910.1 MGP_C3HHeJ_G0025355.1 mouse_genomes_project 2 30886164 30888992 - Ttc16 protein_coding retained_intron MGP_C3HHeJ_T0053911.1 MGP_C3HHeJ_G0025355.1 mouse_genomes_project 2 30887911 30889036 - MGP_C3HHeJ_P0053911 Ttc16 protein_coding protein_coding MGP_C3HHeJ_T0013666.1 MGP_C3HHeJ_G0011770.1 mouse_genomes_project 2 153485523 153486731 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004016.1 MGP_C3HHeJ_G0003556.1 mouse_genomes_project 2 133373596 133385396 + Gm14232 antisense antisense MGP_C3HHeJ_T0053613.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28980382 29022794 + MGP_C3HHeJ_P0053613 Usp20 protein_coding protein_coding MGP_C3HHeJ_T0053614.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28980437 28982338 + Usp20 protein_coding retained_intron MGP_C3HHeJ_T0053615.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28980466 29006800 + MGP_C3HHeJ_P0053615 Usp20 protein_coding protein_coding MGP_C3HHeJ_T0053616.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28980500 29002155 + MGP_C3HHeJ_P0053616 Usp20 protein_coding protein_coding MGP_C3HHeJ_T0053617.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28980532 28998266 + MGP_C3HHeJ_P0053617 Usp20 protein_coding protein_coding MGP_C3HHeJ_T0053618.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28994012 29001824 + MGP_C3HHeJ_P0053618 Usp20 protein_coding protein_coding MGP_C3HHeJ_T0053619.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28994113 29002155 + MGP_C3HHeJ_P0053619 Usp20 protein_coding protein_coding MGP_C3HHeJ_T0053620.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28994399 29022790 + MGP_C3HHeJ_P0053620 Usp20 protein_coding protein_coding MGP_C3HHeJ_T0053621.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28994405 29005601 + Usp20 protein_coding processed_transcript MGP_C3HHeJ_T0053622.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28997029 29005630 + MGP_C3HHeJ_P0053622 Usp20 protein_coding protein_coding MGP_C3HHeJ_T0053623.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 29001766 29002932 + Usp20 protein_coding retained_intron MGP_C3HHeJ_T0053624.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 29019026 29020589 + Usp20 protein_coding retained_intron MGP_C3HHeJ_T0013572.1 MGP_C3HHeJ_G0011676.1 mouse_genomes_project 2 112734302 112735240 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054190.1 MGP_C3HHeJ_G0025418.1 mouse_genomes_project 2 35290638 35291631 - MGP_C3HHeJ_P0054190 Olfr358 protein_coding protein_coding MGP_C3HHeJ_T0013435.1 MGP_C3HHeJ_G0011539.1 mouse_genomes_project 2 65331570 65331792 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057040.1 MGP_C3HHeJ_G0026153.1 mouse_genomes_project 2 127804731 127833327 - MGP_C3HHeJ_P0057040 Cops2 protein_coding protein_coding MGP_C3HHeJ_T0057041.1 MGP_C3HHeJ_G0026153.1 mouse_genomes_project 2 127806034 127833227 - MGP_C3HHeJ_P0057041 Cops2 protein_coding protein_coding MGP_C3HHeJ_T0057042.1 MGP_C3HHeJ_G0026153.1 mouse_genomes_project 2 127806037 127833327 - MGP_C3HHeJ_P0057042 Cops2 protein_coding protein_coding MGP_C3HHeJ_T0057043.1 MGP_C3HHeJ_G0026153.1 mouse_genomes_project 2 127816832 127833184 - Cops2 protein_coding processed_transcript MGP_C3HHeJ_T0057044.1 MGP_C3HHeJ_G0026153.1 mouse_genomes_project 2 127823957 127833251 - Cops2 protein_coding processed_transcript MGP_C3HHeJ_T0013500.1 MGP_C3HHeJ_G0011604.1 mouse_genomes_project 2 87281971 87282641 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011429.1 MGP_C3HHeJ_G0009562.1 mouse_genomes_project 2 178614329 178614393 + Gm27899 misc_RNA misc_RNA MGP_C3HHeJ_T0055424.1 MGP_C3HHeJ_G0025675.1 mouse_genomes_project 2 85701121 85702105 - MGP_C3HHeJ_P0055424 Olfr1024 protein_coding protein_coding MGP_C3HHeJ_T0055570.1 MGP_C3HHeJ_G0025804.1 mouse_genomes_project 2 89157078 89158014 - MGP_C3HHeJ_P0055570 Olfr1216 protein_coding protein_coding MGP_C3HHeJ_T0010259.1 MGP_C3HHeJ_G0008392.1 mouse_genomes_project 2 7692238 7692336 + Mir669l miRNA miRNA MGP_C3HHeJ_T0013561.1 MGP_C3HHeJ_G0011665.1 mouse_genomes_project 2 107871522 107872020 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054517.1 MGP_C3HHeJ_G0025479.1 mouse_genomes_project 2 57064098 57098398 - MGP_C3HHeJ_P0054517 Cytip protein_coding protein_coding MGP_C3HHeJ_T0054518.1 MGP_C3HHeJ_G0025479.1 mouse_genomes_project 2 57068803 57131114 - Cytip protein_coding processed_transcript MGP_C3HHeJ_T0054519.1 MGP_C3HHeJ_G0025479.1 mouse_genomes_project 2 57068888 57131124 - Cytip protein_coding processed_transcript MGP_C3HHeJ_T0054520.1 MGP_C3HHeJ_G0025479.1 mouse_genomes_project 2 57069020 57094689 - Cytip protein_coding processed_transcript MGP_C3HHeJ_T0054521.1 MGP_C3HHeJ_G0025479.1 mouse_genomes_project 2 57082449 57098024 - Cytip protein_coding processed_transcript MGP_C3HHeJ_T0054522.1 MGP_C3HHeJ_G0025479.1 mouse_genomes_project 2 57082624 57131125 - Cytip protein_coding processed_transcript MGP_C3HHeJ_T0054523.1 MGP_C3HHeJ_G0025479.1 mouse_genomes_project 2 57097880 57131129 - Cytip protein_coding processed_transcript MGP_C3HHeJ_T0054524.1 MGP_C3HHeJ_G0025479.1 mouse_genomes_project 2 57097941 57098560 - Cytip protein_coding processed_transcript MGP_C3HHeJ_T0056342.1 MGP_C3HHeJ_G0026002.1 mouse_genomes_project 2 113353299 113354946 + MGP_C3HHeJ_P0056342 protein_coding protein_coding MGP_C3HHeJ_T0003862.1 MGP_C3HHeJ_G0003447.1 mouse_genomes_project 2 24943818 24991495 + Sardhos antisense antisense MGP_C3HHeJ_T0058098.1 MGP_C3HHeJ_G0026421.1 mouse_genomes_project 2 157114485 157119069 + Bpifb4 protein_coding retained_intron MGP_C3HHeJ_T0058099.1 MGP_C3HHeJ_G0026421.1 mouse_genomes_project 2 157114494 157140501 + MGP_C3HHeJ_P0058099 Bpifb4 protein_coding protein_coding MGP_C3HHeJ_T0058100.1 MGP_C3HHeJ_G0026421.1 mouse_genomes_project 2 157117329 157140276 + MGP_C3HHeJ_P0058100 Bpifb4 protein_coding protein_coding MGP_C3HHeJ_T0058101.1 MGP_C3HHeJ_G0026421.1 mouse_genomes_project 2 157118735 157121304 + Bpifb4 protein_coding retained_intron MGP_C3HHeJ_T0058102.1 MGP_C3HHeJ_G0026421.1 mouse_genomes_project 2 157120389 157140276 + MGP_C3HHeJ_P0058102 Bpifb4 protein_coding protein_coding MGP_C3HHeJ_T0052082.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2004612 2026639 - MGP_C3HHeJ_P0052082 Mcm10 protein_coding protein_coding MGP_C3HHeJ_T0052083.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2005622 2010699 - Mcm10 protein_coding retained_intron MGP_C3HHeJ_T0052084.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2005622 2016349 - Mcm10 protein_coding retained_intron MGP_C3HHeJ_T0052085.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2005622 2027168 - MGP_C3HHeJ_P0052085 Mcm10 protein_coding protein_coding MGP_C3HHeJ_T0052086.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2005929 2008062 - Mcm10 protein_coding retained_intron MGP_C3HHeJ_T0052087.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2006158 2009643 - Mcm10 protein_coding retained_intron MGP_C3HHeJ_T0052088.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2013811 2019890 - Mcm10 protein_coding retained_intron MGP_C3HHeJ_T0052089.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2018832 2020110 - Mcm10 protein_coding retained_intron MGP_C3HHeJ_T0052090.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2021301 2027130 - Mcm10 protein_coding processed_transcript MGP_C3HHeJ_T0052091.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2021788 2027092 - Mcm10 protein_coding retained_intron MGP_C3HHeJ_T0055539.1 MGP_C3HHeJ_G0025776.1 mouse_genomes_project 2 88508068 88508992 - MGP_C3HHeJ_P0055539 Olfr1179 protein_coding protein_coding MGP_C3HHeJ_T0057924.1 MGP_C3HHeJ_G0026364.1 mouse_genomes_project 2 154888926 154920719 + MGP_C3HHeJ_P0057924 Rspo4 protein_coding protein_coding MGP_C3HHeJ_T0054802.1 MGP_C3HHeJ_G0025527.1 mouse_genomes_project 2 68487339 68502284 - MGP_C3HHeJ_P0054802 Spc25 protein_coding protein_coding MGP_C3HHeJ_T0054803.1 MGP_C3HHeJ_G0025527.1 mouse_genomes_project 2 68490308 68502594 - MGP_C3HHeJ_P0054803 Spc25 protein_coding protein_coding MGP_C3HHeJ_T0054804.1 MGP_C3HHeJ_G0025527.1 mouse_genomes_project 2 68493554 68501585 - MGP_C3HHeJ_P0054804 Spc25 protein_coding protein_coding MGP_C3HHeJ_T0054805.1 MGP_C3HHeJ_G0025527.1 mouse_genomes_project 2 68493597 68502617 - MGP_C3HHeJ_P0054805 Spc25 protein_coding protein_coding MGP_C3HHeJ_T0054806.1 MGP_C3HHeJ_G0025527.1 mouse_genomes_project 2 68495091 68502560 - Spc25 protein_coding processed_transcript MGP_C3HHeJ_T0054807.1 MGP_C3HHeJ_G0025527.1 mouse_genomes_project 2 68496366 68501670 - Spc25 protein_coding processed_transcript MGP_C3HHeJ_T0054808.1 MGP_C3HHeJ_G0025527.1 mouse_genomes_project 2 68502074 68502616 - Spc25 protein_coding processed_transcript MGP_C3HHeJ_T0099233.1 MGP_C3HHeJ_G0037427.1 mouse_genomes_project 2 186033816 186033919 - Gm22708 snRNA snRNA MGP_C3HHeJ_T0100514.1 MGP_C3HHeJ_G0038708.1 mouse_genomes_project 2 170969608 170969698 + Snord12 snoRNA snoRNA MGP_C3HHeJ_T0054608.1 MGP_C3HHeJ_G0025492.1 mouse_genomes_project 2 59210793 59246275 - MGP_C3HHeJ_P0054608 Cd302 protein_coding protein_coding MGP_C3HHeJ_T0054609.1 MGP_C3HHeJ_G0025492.1 mouse_genomes_project 2 59210793 59246205 - MGP_C3HHeJ_P0054609 Cd302 protein_coding protein_coding MGP_C3HHeJ_T0053263.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26468058 26500691 + MGP_C3HHeJ_P0053263 Tsc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053264.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26468067 26519229 + MGP_C3HHeJ_P0053264 Tsc1 protein_coding protein_coding MGP_C3HHeJ_T0053265.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26468071 26516610 + MGP_C3HHeJ_P0053265 Tsc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053266.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26468071 26519229 + MGP_C3HHeJ_P0053266 Tsc1 protein_coding protein_coding MGP_C3HHeJ_T0053267.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26468073 26519229 + MGP_C3HHeJ_P0053267 Tsc1 protein_coding protein_coding MGP_C3HHeJ_T0053268.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26468080 26501937 + Tsc1 protein_coding retained_intron MGP_C3HHeJ_T0053269.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26468084 26494977 + Tsc1 protein_coding retained_intron MGP_C3HHeJ_T0053270.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26485551 26519229 + MGP_C3HHeJ_P0053270 Tsc1 protein_coding protein_coding MGP_C3HHeJ_T0053271.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26490355 26492983 + Tsc1 protein_coding retained_intron MGP_C3HHeJ_T0053272.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26498032 26501371 + Tsc1 protein_coding retained_intron MGP_C3HHeJ_T0053273.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26500461 26501513 + Tsc1 protein_coding retained_intron MGP_C3HHeJ_T0013701.1 MGP_C3HHeJ_G0011805.1 mouse_genomes_project 2 163406274 163407140 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053070.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24324650 24335196 + MGP_C3HHeJ_P0053070 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053071.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24325692 24338496 + MGP_C3HHeJ_P0053071 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053072.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24329770 24338493 + MGP_C3HHeJ_P0053072 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053073.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24329786 24338494 + MGP_C3HHeJ_P0053073 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053074.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24329811 24338932 + MGP_C3HHeJ_P0053074 Egfl7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053075.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24332439 24338493 + MGP_C3HHeJ_P0053075 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053077.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24332470 24336720 + Egfl7 protein_coding processed_transcript MGP_C3HHeJ_T0053078.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24332481 24336751 + MGP_C3HHeJ_P0053078 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053079.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24332498 24336301 + MGP_C3HHeJ_P0053079 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053080.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24334354 24338255 + MGP_C3HHeJ_P0053080 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053081.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24335146 24337375 + Egfl7 protein_coding retained_intron MGP_C3HHeJ_T0053082.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24336331 24336784 + Egfl7 protein_coding retained_intron MGP_C3HHeJ_T0053083.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24336776 24338488 + MGP_C3HHeJ_P0053083 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053084.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24336840 24338494 + MGP_C3HHeJ_P0053084 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053085.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24337245 24338494 + MGP_C3HHeJ_P0053085 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053086.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24337246 24338494 + MGP_C3HHeJ_P0053086 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053087.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24337257 24338102 + Egfl7 protein_coding retained_intron MGP_C3HHeJ_T0053088.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24337834 24338493 + Egfl7 protein_coding processed_transcript MGP_C3HHeJ_T0053089.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24337958 24338494 + Egfl7 protein_coding retained_intron MGP_C3HHeJ_T0099223.1 MGP_C3HHeJ_G0037417.1 mouse_genomes_project 2 150708292 150708399 - Gm25516 snRNA snRNA MGP_C3HHeJ_T0053681.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29715417 29725906 + Abl1 protein_coding retained_intron MGP_C3HHeJ_T0053682.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29715578 29735175 + Abl1 protein_coding processed_transcript MGP_C3HHeJ_T0053683.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29715592 29840792 + MGP_C3HHeJ_P0053683 Abl1 protein_coding protein_coding MGP_C3HHeJ_T0053684.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29715593 29837590 + MGP_C3HHeJ_P0053684 Abl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053685.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29716506 29812484 + MGP_C3HHeJ_P0053685 Abl1 protein_coding protein_coding MGP_C3HHeJ_T0053686.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29716652 29813116 + MGP_C3HHeJ_P0053686 Abl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053687.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29794014 29841478 + MGP_C3HHeJ_P0053687 Abl1 protein_coding protein_coding MGP_C3HHeJ_T0053688.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29794244 29813116 + MGP_C3HHeJ_P0053688 Abl1 protein_coding protein_coding MGP_C3HHeJ_T0053689.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29826146 29830528 + Abl1 protein_coding retained_intron MGP_C3HHeJ_T0053690.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29833896 29835243 + Abl1 protein_coding retained_intron MGP_C3HHeJ_T0013591.1 MGP_C3HHeJ_G0011695.1 mouse_genomes_project 2 122679385 122680153 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003877.1 MGP_C3HHeJ_G0003460.1 mouse_genomes_project 2 30074064 30074765 - Gm13609 antisense antisense MGP_C3HHeJ_T0010277.1 MGP_C3HHeJ_G0008410.1 mouse_genomes_project 2 7716343 7716441 + Mir669m-2 miRNA miRNA MGP_C3HHeJ_T0010338.1 MGP_C3HHeJ_G0008471.1 mouse_genomes_project 2 75221917 75221991 + Gm24574 miRNA miRNA MGP_C3HHeJ_T0057259.1 MGP_C3HHeJ_G0026205.1 mouse_genomes_project 2 131404660 131432186 - MGP_C3HHeJ_P0057259 Ckap2l protein_coding protein_coding MGP_C3HHeJ_T0100510.1 MGP_C3HHeJ_G0038704.1 mouse_genomes_project 2 166394419 166394545 + Gm22936 snoRNA snoRNA MGP_C3HHeJ_T0055654.1 MGP_C3HHeJ_G0025853.1 mouse_genomes_project 2 91106728 91142761 + MGP_C3HHeJ_P0055654 Agbl2 protein_coding protein_coding MGP_C3HHeJ_T0055655.1 MGP_C3HHeJ_G0025853.1 mouse_genomes_project 2 91106728 91162468 + MGP_C3HHeJ_P0055655 Agbl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055656.1 MGP_C3HHeJ_G0025853.1 mouse_genomes_project 2 91106729 91136186 + MGP_C3HHeJ_P0055656 Agbl2 protein_coding protein_coding MGP_C3HHeJ_T0055657.1 MGP_C3HHeJ_G0025853.1 mouse_genomes_project 2 91106745 91141748 + MGP_C3HHeJ_P0055657 Agbl2 protein_coding protein_coding MGP_C3HHeJ_T0055658.1 MGP_C3HHeJ_G0025853.1 mouse_genomes_project 2 91107171 91139786 + MGP_C3HHeJ_P0055658 Agbl2 protein_coding protein_coding MGP_C3HHeJ_T0055659.1 MGP_C3HHeJ_G0025853.1 mouse_genomes_project 2 91107198 91157311 + Agbl2 protein_coding processed_transcript MGP_C3HHeJ_T0055660.1 MGP_C3HHeJ_G0025853.1 mouse_genomes_project 2 91107506 91141748 + MGP_C3HHeJ_P0055660 Agbl2 protein_coding protein_coding MGP_C3HHeJ_T0055661.1 MGP_C3HHeJ_G0025853.1 mouse_genomes_project 2 91107560 91141030 + MGP_C3HHeJ_P0055661 Agbl2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055662.1 MGP_C3HHeJ_G0025853.1 mouse_genomes_project 2 91107993 91122234 + Agbl2 protein_coding processed_transcript MGP_C3HHeJ_T0017556.1 MGP_C3HHeJ_G0015183.1 mouse_genomes_project 2 56071205 56075003 + processed_transcript processed_transcript MGP_C3HHeJ_T0013719.1 MGP_C3HHeJ_G0011823.1 mouse_genomes_project 2 171462430 171462707 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054809.1 MGP_C3HHeJ_G0025528.1 mouse_genomes_project 2 68507959 68526072 + G6pc2 protein_coding processed_transcript MGP_C3HHeJ_T0054810.1 MGP_C3HHeJ_G0025528.1 mouse_genomes_project 2 68519358 68527230 + MGP_C3HHeJ_P0054810 G6pc2 protein_coding protein_coding MGP_C3HHeJ_T0054811.1 MGP_C3HHeJ_G0025528.1 mouse_genomes_project 2 68519385 68527230 + MGP_C3HHeJ_P0054811 G6pc2 protein_coding protein_coding MGP_C3HHeJ_T0054812.1 MGP_C3HHeJ_G0025528.1 mouse_genomes_project 2 68519415 68526224 + G6pc2 protein_coding processed_transcript MGP_C3HHeJ_T0013715.1 MGP_C3HHeJ_G0011819.1 mouse_genomes_project 2 170907632 170910679 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058270.1 MGP_C3HHeJ_G0026462.1 mouse_genomes_project 2 159120300 159121988 - MGP_C3HHeJ_P0058270 BC029722 protein_coding protein_coding MGP_C3HHeJ_T0059516.1 MGP_C3HHeJ_G0026737.1 mouse_genomes_project 2 185971980 185987837 + MGP_C3HHeJ_P0059516 Zgpat protein_coding protein_coding MGP_C3HHeJ_T0059517.1 MGP_C3HHeJ_G0026737.1 mouse_genomes_project 2 185972463 185987825 + MGP_C3HHeJ_P0059517 Zgpat protein_coding protein_coding MGP_C3HHeJ_T0059518.1 MGP_C3HHeJ_G0026737.1 mouse_genomes_project 2 185972481 185990671 + MGP_C3HHeJ_P0059518 Zgpat protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059519.1 MGP_C3HHeJ_G0026737.1 mouse_genomes_project 2 185972510 185990669 + Zgpat protein_coding retained_intron MGP_C3HHeJ_T0059520.1 MGP_C3HHeJ_G0026737.1 mouse_genomes_project 2 185985436 185986862 + Zgpat protein_coding retained_intron MGP_C3HHeJ_T0059521.1 MGP_C3HHeJ_G0026737.1 mouse_genomes_project 2 185986681 185987781 + MGP_C3HHeJ_P0059521 Zgpat protein_coding protein_coding MGP_C3HHeJ_T0056025.1 MGP_C3HHeJ_G0025909.1 mouse_genomes_project 2 102224266 102240485 - MGP_C3HHeJ_P0056025 B230118H07Rik protein_coding protein_coding MGP_C3HHeJ_T0056026.1 MGP_C3HHeJ_G0025909.1 mouse_genomes_project 2 102224331 102296646 - MGP_C3HHeJ_P0056026 B230118H07Rik protein_coding protein_coding MGP_C3HHeJ_T0056027.1 MGP_C3HHeJ_G0025909.1 mouse_genomes_project 2 102224367 102296598 - MGP_C3HHeJ_P0056027 B230118H07Rik protein_coding protein_coding MGP_C3HHeJ_T0056028.1 MGP_C3HHeJ_G0025909.1 mouse_genomes_project 2 102224371 102249233 - B230118H07Rik protein_coding processed_transcript MGP_C3HHeJ_T0056029.1 MGP_C3HHeJ_G0025909.1 mouse_genomes_project 2 102240394 102295960 - MGP_C3HHeJ_P0056029 B230118H07Rik protein_coding protein_coding MGP_C3HHeJ_T0056030.1 MGP_C3HHeJ_G0025909.1 mouse_genomes_project 2 102277036 102296665 - B230118H07Rik protein_coding retained_intron MGP_C3HHeJ_T0056031.1 MGP_C3HHeJ_G0025909.1 mouse_genomes_project 2 102277562 102288743 - B230118H07Rik protein_coding retained_intron MGP_C3HHeJ_T0056032.1 MGP_C3HHeJ_G0025909.1 mouse_genomes_project 2 102278072 102317135 - B230118H07Rik protein_coding retained_intron MGP_C3HHeJ_T0054283.1 MGP_C3HHeJ_G0025442.1 mouse_genomes_project 2 37358646 37369198 + Arpc5l protein_coding processed_transcript MGP_C3HHeJ_T0054284.1 MGP_C3HHeJ_G0025442.1 mouse_genomes_project 2 37361362 37369749 + MGP_C3HHeJ_P0054284 Arpc5l protein_coding protein_coding MGP_C3HHeJ_T0054285.1 MGP_C3HHeJ_G0025442.1 mouse_genomes_project 2 37361427 37367771 + Arpc5l protein_coding processed_transcript MGP_C3HHeJ_T0054286.1 MGP_C3HHeJ_G0025442.1 mouse_genomes_project 2 37361443 37369265 + MGP_C3HHeJ_P0054286 Arpc5l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054287.1 MGP_C3HHeJ_G0025442.1 mouse_genomes_project 2 37363304 37369749 + Arpc5l protein_coding processed_transcript MGP_C3HHeJ_T0100465.1 MGP_C3HHeJ_G0038659.1 mouse_genomes_project 2 80600215 80600346 + Gm22652 snoRNA snoRNA MGP_C3HHeJ_T0056873.1 MGP_C3HHeJ_G0026110.1 mouse_genomes_project 2 123029888 123053417 - MGP_C3HHeJ_P0056873 Catsper2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056874.1 MGP_C3HHeJ_G0026110.1 mouse_genomes_project 2 123030273 123053572 - MGP_C3HHeJ_P0056874 Catsper2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0056875.1 MGP_C3HHeJ_G0026110.1 mouse_genomes_project 2 123031614 123053600 - MGP_C3HHeJ_P0056875 Catsper2 protein_coding protein_coding MGP_C3HHeJ_T0056876.1 MGP_C3HHeJ_G0026110.1 mouse_genomes_project 2 123031616 123035606 - Catsper2 protein_coding retained_intron MGP_C3HHeJ_T0056877.1 MGP_C3HHeJ_G0026110.1 mouse_genomes_project 2 123050053 123052099 - Catsper2 protein_coding retained_intron MGP_C3HHeJ_T0013538.1 MGP_C3HHeJ_G0011642.1 mouse_genomes_project 2 101028842 101029629 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058585.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161888382 161989702 + MGP_C3HHeJ_P0058585 Ralgapb protein_coding protein_coding MGP_C3HHeJ_T0058586.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161888387 161989702 + MGP_C3HHeJ_P0058586 Ralgapb protein_coding protein_coding MGP_C3HHeJ_T0058587.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161888410 161915484 + Ralgapb protein_coding retained_intron MGP_C3HHeJ_T0058588.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161888413 161927059 + Ralgapb protein_coding retained_intron MGP_C3HHeJ_T0058589.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161888416 161930699 + Ralgapb protein_coding processed_transcript MGP_C3HHeJ_T0058590.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161888485 161988109 + MGP_C3HHeJ_P0058590 Ralgapb protein_coding protein_coding MGP_C3HHeJ_T0058591.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161888636 161908328 + MGP_C3HHeJ_P0058591 Ralgapb protein_coding protein_coding MGP_C3HHeJ_T0058592.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161923966 161989702 + MGP_C3HHeJ_P0058592 Ralgapb protein_coding protein_coding MGP_C3HHeJ_T0058593.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161953066 161962698 + Ralgapb protein_coding retained_intron MGP_C3HHeJ_T0058594.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161967005 161973989 + Ralgapb protein_coding processed_transcript MGP_C3HHeJ_T0101884.1 MGP_C3HHeJ_G0039849.1 mouse_genomes_project 2 37323539 37327661 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013733.1 MGP_C3HHeJ_G0011837.1 mouse_genomes_project 2 183877378 183878129 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017568.1 MGP_C3HHeJ_G0015192.1 mouse_genomes_project 2 74205807 74216557 + Gm28309 processed_transcript processed_transcript MGP_C3HHeJ_T0057549.1 MGP_C3HHeJ_G0026268.1 mouse_genomes_project 2 135152779 135165293 - MGP_C3HHeJ_P0057549 Lrrn4 protein_coding protein_coding MGP_C3HHeJ_T0004074.1 MGP_C3HHeJ_G0003602.1 mouse_genomes_project 2 164408902 164461712 - Gm16751 antisense antisense MGP_C3HHeJ_T0013304.1 MGP_C3HHeJ_G0011408.1 mouse_genomes_project 2 16148567 16148829 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054406.1 MGP_C3HHeJ_G0025455.1 mouse_genomes_project 2 48279348 48440601 + MGP_C3HHeJ_P0054406 Kif5c protein_coding protein_coding MGP_C3HHeJ_T0054407.1 MGP_C3HHeJ_G0025455.1 mouse_genomes_project 2 48364315 48396243 + MGP_C3HHeJ_P0054407 Kif5c protein_coding protein_coding MGP_C3HHeJ_T0054408.1 MGP_C3HHeJ_G0025455.1 mouse_genomes_project 2 48387790 48401576 + Kif5c protein_coding processed_transcript MGP_C3HHeJ_T0054409.1 MGP_C3HHeJ_G0025455.1 mouse_genomes_project 2 48398602 48401567 + Kif5c protein_coding processed_transcript MGP_C3HHeJ_T0054410.1 MGP_C3HHeJ_G0025455.1 mouse_genomes_project 2 48410516 48423379 + Kif5c protein_coding processed_transcript MGP_C3HHeJ_T0054411.1 MGP_C3HHeJ_G0025455.1 mouse_genomes_project 2 48418181 48424900 + Kif5c protein_coding processed_transcript MGP_C3HHeJ_T0007125.1 MGP_C3HHeJ_G0005837.1 mouse_genomes_project 2 54312076 54316423 - Gm26794 lincRNA lincRNA MGP_C3HHeJ_T0004103.1 MGP_C3HHeJ_G0003623.1 mouse_genomes_project 2 174695142 174697513 + Gm14637 antisense antisense MGP_C3HHeJ_T0007201.1 MGP_C3HHeJ_G0005899.1 mouse_genomes_project 2 106273450 106274310 + 4930527A07Rik lincRNA lincRNA MGP_C3HHeJ_T0013517.1 MGP_C3HHeJ_G0011621.1 mouse_genomes_project 2 92012306 92012544 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017648.1 MGP_C3HHeJ_G0015231.1 mouse_genomes_project 2 131340696 131362481 - 9830144P21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017649.1 MGP_C3HHeJ_G0015231.1 mouse_genomes_project 2 131360226 131366614 - 9830144P21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0052291.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9660237 9736280 - Fam188a protein_coding processed_transcript MGP_C3HHeJ_T0052292.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9660237 9736302 - MGP_C3HHeJ_P0052292 Fam188a protein_coding protein_coding MGP_C3HHeJ_T0052293.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9660237 9736280 - MGP_C3HHeJ_P0052293 Fam188a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052294.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9660237 9736276 - MGP_C3HHeJ_P0052294 Fam188a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052295.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9660237 9736267 - MGP_C3HHeJ_P0052295 Fam188a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052296.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9660240 9736284 - MGP_C3HHeJ_P0052296 Fam188a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052297.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9660606 9669886 - MGP_C3HHeJ_P0052297 Fam188a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052298.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9660892 9713867 - Fam188a protein_coding retained_intron MGP_C3HHeJ_T0052299.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9660940 9736120 - Fam188a protein_coding processed_transcript MGP_C3HHeJ_T0052300.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9663904 9736242 - MGP_C3HHeJ_P0052300 Fam188a protein_coding protein_coding MGP_C3HHeJ_T0052301.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9669759 9736263 - Fam188a protein_coding retained_intron MGP_C3HHeJ_T0052302.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9677273 9679118 - Fam188a protein_coding retained_intron MGP_C3HHeJ_T0052303.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9677442 9736281 - MGP_C3HHeJ_P0052303 Fam188a protein_coding protein_coding MGP_C3HHeJ_T0052304.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9701960 9702796 - Fam188a protein_coding retained_intron MGP_C3HHeJ_T0052305.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9702661 9725737 - MGP_C3HHeJ_P0052305 Fam188a protein_coding protein_coding MGP_C3HHeJ_T0052306.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9715640 9736273 - Fam188a protein_coding retained_intron MGP_C3HHeJ_T0052307.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9716025 9725876 - Fam188a protein_coding retained_intron MGP_C3HHeJ_T0052308.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9717040 9736223 - MGP_C3HHeJ_P0052308 Fam188a protein_coding protein_coding MGP_C3HHeJ_T0052309.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9717051 9736081 - MGP_C3HHeJ_P0052309 Fam188a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052310.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9719979 9720711 - Fam188a protein_coding processed_transcript MGP_C3HHeJ_T0058756.1 MGP_C3HHeJ_G0026553.1 mouse_genomes_project 2 167763478 167781453 + MGP_C3HHeJ_P0058756 Stk4 protein_coding protein_coding MGP_C3HHeJ_T0058757.1 MGP_C3HHeJ_G0026553.1 mouse_genomes_project 2 167769029 167856490 + MGP_C3HHeJ_P0058757 Stk4 protein_coding protein_coding MGP_C3HHeJ_T0058758.1 MGP_C3HHeJ_G0026553.1 mouse_genomes_project 2 167776458 167793828 + Stk4 protein_coding processed_transcript MGP_C3HHeJ_T0058759.1 MGP_C3HHeJ_G0026553.1 mouse_genomes_project 2 167796509 167815507 + MGP_C3HHeJ_P0058759 Stk4 protein_coding protein_coding MGP_C3HHeJ_T0058760.1 MGP_C3HHeJ_G0026553.1 mouse_genomes_project 2 167806998 167856490 + MGP_C3HHeJ_P0058760 Stk4 protein_coding protein_coding MGP_C3HHeJ_T0057662.1 MGP_C3HHeJ_G0026294.1 mouse_genomes_project 2 145753205 145756446 + MGP_C3HHeJ_P0057662 Otor protein_coding protein_coding MGP_C3HHeJ_T0007095.1 MGP_C3HHeJ_G0005813.1 mouse_genomes_project 2 32155736 32157815 + Gm13404 lincRNA lincRNA MGP_C3HHeJ_T0013349.1 MGP_C3HHeJ_G0011453.1 mouse_genomes_project 2 34406580 34406945 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003956.1 MGP_C3HHeJ_G0003516.1 mouse_genomes_project 2 80126128 80131977 + Gm13752 antisense antisense MGP_C3HHeJ_T0054772.1 MGP_C3HHeJ_G0025520.1 mouse_genomes_project 2 66673527 66752339 + MGP_C3HHeJ_P0054772 Xirp2 protein_coding protein_coding MGP_C3HHeJ_T0054773.1 MGP_C3HHeJ_G0025520.1 mouse_genomes_project 2 66673527 66752347 + MGP_C3HHeJ_P0054773 Xirp2 protein_coding protein_coding MGP_C3HHeJ_T0100507.1 MGP_C3HHeJ_G0038701.1 mouse_genomes_project 2 161848542 161848675 + Gm25129 snoRNA snoRNA MGP_C3HHeJ_T0100495.1 MGP_C3HHeJ_G0038689.1 mouse_genomes_project 2 153840849 153840993 + Gm23598 snoRNA snoRNA MGP_C3HHeJ_T0004085.1 MGP_C3HHeJ_G0003609.1 mouse_genomes_project 2 167836670 167841387 + Gm11455 antisense antisense MGP_C3HHeJ_T0054116.1 MGP_C3HHeJ_G0025389.1 mouse_genomes_project 2 33635260 33668055 - MGP_C3HHeJ_P0054116 Ggta1 protein_coding protein_coding MGP_C3HHeJ_T0054117.1 MGP_C3HHeJ_G0025389.1 mouse_genomes_project 2 33635260 33703544 - MGP_C3HHeJ_P0054117 Ggta1 protein_coding protein_coding MGP_C3HHeJ_T0054118.1 MGP_C3HHeJ_G0025389.1 mouse_genomes_project 2 33635264 33703727 - MGP_C3HHeJ_P0054118 Ggta1 protein_coding protein_coding MGP_C3HHeJ_T0054119.1 MGP_C3HHeJ_G0025389.1 mouse_genomes_project 2 33635264 33703527 - MGP_C3HHeJ_P0054119 Ggta1 protein_coding protein_coding MGP_C3HHeJ_T0054120.1 MGP_C3HHeJ_G0025389.1 mouse_genomes_project 2 33637190 33658403 - MGP_C3HHeJ_P0054120 Ggta1 protein_coding protein_coding MGP_C3HHeJ_T0054121.1 MGP_C3HHeJ_G0025389.1 mouse_genomes_project 2 33637190 33658403 - MGP_C3HHeJ_P0054121 Ggta1 protein_coding protein_coding MGP_C3HHeJ_T0054122.1 MGP_C3HHeJ_G0025389.1 mouse_genomes_project 2 33643000 33678426 - MGP_C3HHeJ_P0054122 Ggta1 protein_coding protein_coding MGP_C3HHeJ_T0054123.1 MGP_C3HHeJ_G0025389.1 mouse_genomes_project 2 33658404 33682156 - Ggta1 protein_coding processed_transcript MGP_C3HHeJ_T0054124.1 MGP_C3HHeJ_G0025389.1 mouse_genomes_project 2 33667935 33705406 - Ggta1 protein_coding processed_transcript MGP_C3HHeJ_T0052077.1 MGP_C3HHeJ_G0025051.1 mouse_genomes_project 2 1991065 2000650 + MGP_C3HHeJ_P0052077 Ucma protein_coding protein_coding MGP_C3HHeJ_T0052078.1 MGP_C3HHeJ_G0025051.1 mouse_genomes_project 2 1991068 1996222 + Ucma protein_coding processed_transcript MGP_C3HHeJ_T0052079.1 MGP_C3HHeJ_G0025051.1 mouse_genomes_project 2 1991094 2000642 + MGP_C3HHeJ_P0052079 Ucma protein_coding protein_coding MGP_C3HHeJ_T0052080.1 MGP_C3HHeJ_G0025051.1 mouse_genomes_project 2 1991124 2000647 + MGP_C3HHeJ_P0052080 Ucma protein_coding protein_coding MGP_C3HHeJ_T0052081.1 MGP_C3HHeJ_G0025051.1 mouse_genomes_project 2 1991127 2000547 + MGP_C3HHeJ_P0052081 Ucma protein_coding protein_coding MGP_C3HHeJ_T0004077.1 MGP_C3HHeJ_G0003605.1 mouse_genomes_project 2 167161196 167162245 + 2310001K24Rik antisense antisense MGP_C3HHeJ_T0004078.1 MGP_C3HHeJ_G0003605.1 mouse_genomes_project 2 167161784 167162243 + 2310001K24Rik antisense antisense MGP_C3HHeJ_T0100493.1 MGP_C3HHeJ_G0038687.1 mouse_genomes_project 2 151485842 151485954 + Gm25866 snoRNA snoRNA MGP_C3HHeJ_T0055551.1 MGP_C3HHeJ_G0025787.1 mouse_genomes_project 2 88836109 88836726 - MGP_C3HHeJ_P0055551 protein_coding protein_coding MGP_C3HHeJ_T0057238.1 MGP_C3HHeJ_G0026200.1 mouse_genomes_project 2 131159672 131170402 - MGP_C3HHeJ_P0057238 protein_coding protein_coding MGP_C3HHeJ_T0054404.1 MGP_C3HHeJ_G0025454.1 mouse_genomes_project 2 48110788 48211217 + MGP_C3HHeJ_P0054404 Epc2 protein_coding protein_coding MGP_C3HHeJ_T0054405.1 MGP_C3HHeJ_G0025454.1 mouse_genomes_project 2 48188143 48196350 + MGP_C3HHeJ_P0054405 Epc2 protein_coding protein_coding MGP_C3HHeJ_T0013414.1 MGP_C3HHeJ_G0011518.1 mouse_genomes_project 2 57273869 57282079 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099187.1 MGP_C3HHeJ_G0037381.1 mouse_genomes_project 2 35572794 35572901 + Gm22306 snRNA snRNA MGP_C3HHeJ_T0010284.1 MGP_C3HHeJ_G0008417.1 mouse_genomes_project 2 7719958 7720056 + Mir297a-4 miRNA miRNA MGP_C3HHeJ_T0059278.1 MGP_C3HHeJ_G0026688.1 mouse_genomes_project 2 178799735 178807512 - MGP_C3HHeJ_P0059278 Slmo2 protein_coding protein_coding MGP_C3HHeJ_T0059279.1 MGP_C3HHeJ_G0026688.1 mouse_genomes_project 2 178800340 178807583 - MGP_C3HHeJ_P0059279 Slmo2 protein_coding protein_coding MGP_C3HHeJ_T0059280.1 MGP_C3HHeJ_G0026688.1 mouse_genomes_project 2 178803818 178807540 - Slmo2 protein_coding retained_intron MGP_C3HHeJ_T0059281.1 MGP_C3HHeJ_G0026688.1 mouse_genomes_project 2 178804027 178807580 - MGP_C3HHeJ_P0059281 Slmo2 protein_coding protein_coding MGP_C3HHeJ_T0057517.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134786452 134799404 - Gpcpd1 protein_coding retained_intron MGP_C3HHeJ_T0057518.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134786452 134835532 - MGP_C3HHeJ_P0057518 Gpcpd1 protein_coding protein_coding MGP_C3HHeJ_T0057519.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134786452 134835477 - MGP_C3HHeJ_P0057519 Gpcpd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057520.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134786452 134835486 - MGP_C3HHeJ_P0057520 Gpcpd1 protein_coding protein_coding MGP_C3HHeJ_T0057521.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134786452 134835547 - MGP_C3HHeJ_P0057521 Gpcpd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057522.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134786452 134835534 - MGP_C3HHeJ_P0057522 Gpcpd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057523.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134786453 134835547 - MGP_C3HHeJ_P0057523 Gpcpd1 protein_coding protein_coding MGP_C3HHeJ_T0057524.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134790095 134835432 - MGP_C3HHeJ_P0057524 Gpcpd1 protein_coding protein_coding MGP_C3HHeJ_T0057525.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134791521 134795502 - MGP_C3HHeJ_P0057525 Gpcpd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057526.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134807840 134835486 - MGP_C3HHeJ_P0057526 Gpcpd1 protein_coding protein_coding MGP_C3HHeJ_T0057527.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134811292 134844988 - MGP_C3HHeJ_P0057527 Gpcpd1 protein_coding protein_coding MGP_C3HHeJ_T0057528.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134811404 134835516 - Gpcpd1 protein_coding processed_transcript MGP_C3HHeJ_T0057529.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134821881 134835545 - Gpcpd1 protein_coding processed_transcript MGP_C3HHeJ_T0056059.1 MGP_C3HHeJ_G0025917.1 mouse_genomes_project 2 103157360 103160502 - MGP_C3HHeJ_P0056059 protein_coding protein_coding MGP_C3HHeJ_T0007196.1 MGP_C3HHeJ_G0005895.1 mouse_genomes_project 2 103931743 103935892 - Gm13869 lincRNA lincRNA MGP_C3HHeJ_T0054514.1 MGP_C3HHeJ_G0025477.1 mouse_genomes_project 2 56935749 56982580 + MGP_C3HHeJ_P0054514 Galnt5 protein_coding protein_coding MGP_C3HHeJ_T0054515.1 MGP_C3HHeJ_G0025477.1 mouse_genomes_project 2 56935749 56976590 + MGP_C3HHeJ_P0054515 Galnt5 protein_coding protein_coding MGP_C3HHeJ_T0001037.1 MGP_C3HHeJ_G0000974.1 mouse_genomes_project 2 34527989 34530013 - TEC TEC MGP_C3HHeJ_T0007311.1 MGP_C3HHeJ_G0005991.1 mouse_genomes_project 2 170369330 170372807 - Gm14267 lincRNA lincRNA MGP_C3HHeJ_T0100496.1 MGP_C3HHeJ_G0038690.1 mouse_genomes_project 2 154024083 154024212 + Gm22187 snoRNA snoRNA MGP_C3HHeJ_T0059110.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172190437 172212693 - MGP_C3HHeJ_P0059110 Dpm1 protein_coding protein_coding MGP_C3HHeJ_T0059111.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172191670 172199054 - Dpm1 protein_coding retained_intron MGP_C3HHeJ_T0059112.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172191670 172212905 - MGP_C3HHeJ_P0059112 Dpm1 protein_coding protein_coding MGP_C3HHeJ_T0059113.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172191671 172197319 - Dpm1 protein_coding retained_intron MGP_C3HHeJ_T0059114.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172191905 172194651 - Dpm1 protein_coding retained_intron MGP_C3HHeJ_T0059115.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172191931 172212642 - MGP_C3HHeJ_P0059115 Dpm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059116.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172191977 172205629 - Dpm1 protein_coding retained_intron MGP_C3HHeJ_T0059117.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172192773 172212390 - Dpm1 protein_coding processed_transcript MGP_C3HHeJ_T0059118.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172198966 172212544 - Dpm1 protein_coding retained_intron MGP_C3HHeJ_T0059119.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172202268 172212676 - Dpm1 protein_coding retained_intron MGP_C3HHeJ_T0058855.1 MGP_C3HHeJ_G0026593.1 mouse_genomes_project 2 168564603 168582036 + MGP_C3HHeJ_P0058855 Zswim3 protein_coding protein_coding MGP_C3HHeJ_T0054215.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35733393 35787232 + MGP_C3HHeJ_P0054215 Rabgap1 protein_coding protein_coding MGP_C3HHeJ_T0054216.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35733399 35858991 + MGP_C3HHeJ_P0054216 Rabgap1 protein_coding protein_coding MGP_C3HHeJ_T0054217.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35733410 35779813 + Rabgap1 protein_coding retained_intron MGP_C3HHeJ_T0054218.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35741747 35743900 + Rabgap1 protein_coding processed_transcript MGP_C3HHeJ_T0054219.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35742356 35766784 + MGP_C3HHeJ_P0054219 Rabgap1 protein_coding protein_coding MGP_C3HHeJ_T0054220.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35742356 35837038 + MGP_C3HHeJ_P0054220 Rabgap1 protein_coding protein_coding MGP_C3HHeJ_T0054221.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35742378 35859008 + MGP_C3HHeJ_P0054221 Rabgap1 protein_coding protein_coding MGP_C3HHeJ_T0054223.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35782509 35785589 + Rabgap1 protein_coding retained_intron MGP_C3HHeJ_T0054224.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35783573 35801414 + Rabgap1 protein_coding processed_transcript MGP_C3HHeJ_T0054226.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35808604 35857607 + Rabgap1 protein_coding processed_transcript MGP_C3HHeJ_T0052455.1 MGP_C3HHeJ_G0025110.1 mouse_genomes_project 2 16194788 16199641 + Spag6 protein_coding processed_transcript MGP_C3HHeJ_T0052456.1 MGP_C3HHeJ_G0025110.1 mouse_genomes_project 2 16194808 16199794 + Spag6 protein_coding processed_transcript MGP_C3HHeJ_T0052457.1 MGP_C3HHeJ_G0025110.1 mouse_genomes_project 2 16199779 16254979 + MGP_C3HHeJ_P0052457 Spag6 protein_coding protein_coding MGP_C3HHeJ_T0052458.1 MGP_C3HHeJ_G0025110.1 mouse_genomes_project 2 16199840 16234441 + MGP_C3HHeJ_P0052458 Spag6 protein_coding protein_coding MGP_C3HHeJ_T0013371.1 MGP_C3HHeJ_G0011475.1 mouse_genomes_project 2 38661691 38662208 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007256.1 MGP_C3HHeJ_G0005944.1 mouse_genomes_project 2 139614448 139615198 + Gm28214 lincRNA lincRNA MGP_C3HHeJ_T0058964.1 MGP_C3HHeJ_G0026615.1 mouse_genomes_project 2 169298015 169313312 + MGP_C3HHeJ_P0058964 Slc2a10 protein_coding protein_coding MGP_C3HHeJ_T0058965.1 MGP_C3HHeJ_G0026615.1 mouse_genomes_project 2 169302666 169308174 + Slc2a10 protein_coding processed_transcript MGP_C3HHeJ_T0010397.1 MGP_C3HHeJ_G0008530.1 mouse_genomes_project 2 172036509 172036587 - Gm24327 miRNA miRNA MGP_C3HHeJ_T0003826.1 MGP_C3HHeJ_G0003421.1 mouse_genomes_project 2 8777423 8786181 + Gm10851 antisense antisense MGP_C3HHeJ_T0054627.1 MGP_C3HHeJ_G0025496.1 mouse_genomes_project 2 59732872 59956095 - MGP_C3HHeJ_P0054627 Rbms1 protein_coding protein_coding MGP_C3HHeJ_T0054628.1 MGP_C3HHeJ_G0025496.1 mouse_genomes_project 2 59735541 59870768 - MGP_C3HHeJ_P0054628 Rbms1 protein_coding protein_coding MGP_C3HHeJ_T0054629.1 MGP_C3HHeJ_G0025496.1 mouse_genomes_project 2 59736310 59870800 - MGP_C3HHeJ_P0054629 Rbms1 protein_coding protein_coding MGP_C3HHeJ_T0054630.1 MGP_C3HHeJ_G0025496.1 mouse_genomes_project 2 59737142 59745885 - Rbms1 protein_coding processed_transcript MGP_C3HHeJ_T0054631.1 MGP_C3HHeJ_G0025496.1 mouse_genomes_project 2 59739017 59764310 - Rbms1 protein_coding processed_transcript MGP_C3HHeJ_T0054632.1 MGP_C3HHeJ_G0025496.1 mouse_genomes_project 2 59830672 59877385 - Rbms1 protein_coding processed_transcript MGP_C3HHeJ_T0054633.1 MGP_C3HHeJ_G0025496.1 mouse_genomes_project 2 59830672 59878360 - Rbms1 protein_coding processed_transcript MGP_C3HHeJ_T0054634.1 MGP_C3HHeJ_G0025496.1 mouse_genomes_project 2 59877541 59877838 - Rbms1 protein_coding processed_transcript MGP_C3HHeJ_T0054635.1 MGP_C3HHeJ_G0025496.1 mouse_genomes_project 2 59877753 59878326 - Rbms1 protein_coding processed_transcript MGP_C3HHeJ_T0097897.1 MGP_C3HHeJ_G0036109.1 mouse_genomes_project 2 111553727 111553936 - pseudogene pseudogene MGP_C3HHeJ_T0057838.1 MGP_C3HHeJ_G0026344.1 mouse_genomes_project 2 153082382 153205938 + MGP_C3HHeJ_P0057838 protein_coding protein_coding MGP_C3HHeJ_T0058743.1 MGP_C3HHeJ_G0026548.1 mouse_genomes_project 2 167531241 167537053 + MGP_C3HHeJ_P0058743 Kcnk15 protein_coding protein_coding MGP_C3HHeJ_T0058744.1 MGP_C3HHeJ_G0026548.1 mouse_genomes_project 2 167531323 167537857 + MGP_C3HHeJ_P0058744 Kcnk15 protein_coding protein_coding MGP_C3HHeJ_T0013527.1 MGP_C3HHeJ_G0011631.1 mouse_genomes_project 2 96151347 96151486 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054817.1 MGP_C3HHeJ_G0025530.1 mouse_genomes_project 2 68696283 68720134 + MGP_C3HHeJ_P0054817 Dhrs9 protein_coding protein_coding MGP_C3HHeJ_T0101930.1 MGP_C3HHeJ_G0039895.1 mouse_genomes_project 2 151795036 151799009 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0052772.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22941643 22969715 - MGP_C3HHeJ_P0052772 Grin1 protein_coding protein_coding MGP_C3HHeJ_T0052773.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22941643 22969807 - MGP_C3HHeJ_P0052773 Grin1 protein_coding protein_coding MGP_C3HHeJ_T0052774.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22941643 22969740 - MGP_C3HHeJ_P0052774 Grin1 protein_coding protein_coding MGP_C3HHeJ_T0052775.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22941643 22969715 - MGP_C3HHeJ_P0052775 Grin1 protein_coding protein_coding MGP_C3HHeJ_T0052776.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22941643 22969715 - MGP_C3HHeJ_P0052776 Grin1 protein_coding protein_coding MGP_C3HHeJ_T0052777.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22941643 22969740 - MGP_C3HHeJ_P0052777 Grin1 protein_coding protein_coding MGP_C3HHeJ_T0052778.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22941643 22969740 - MGP_C3HHeJ_P0052778 Grin1 protein_coding protein_coding MGP_C3HHeJ_T0052779.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22941643 22969715 - MGP_C3HHeJ_P0052779 Grin1 protein_coding protein_coding MGP_C3HHeJ_T0052780.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22941819 22954435 - Grin1 protein_coding processed_transcript MGP_C3HHeJ_T0052781.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22942520 22947142 - Grin1 protein_coding processed_transcript MGP_C3HHeJ_T0052782.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22954130 22955720 - Grin1 protein_coding processed_transcript MGP_C3HHeJ_T0052783.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22954233 22956017 - Grin1 protein_coding processed_transcript MGP_C3HHeJ_T0052784.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22961420 22969746 - Grin1 protein_coding processed_transcript MGP_C3HHeJ_T0052785.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22965020 22969783 - Grin1 protein_coding processed_transcript MGP_C3HHeJ_T0057663.1 MGP_C3HHeJ_G0026295.1 mouse_genomes_project 2 146237903 146494361 + MGP_C3HHeJ_P0057663 Pcsk2 protein_coding protein_coding MGP_C3HHeJ_T0057664.1 MGP_C3HHeJ_G0026295.1 mouse_genomes_project 2 146238018 146268270 + Pcsk2 protein_coding processed_transcript MGP_C3HHeJ_T0055023.1 MGP_C3HHeJ_G0025569.1 mouse_genomes_project 2 72851639 72896903 - MGP_C3HHeJ_P0055023 Gpr155 protein_coding protein_coding MGP_C3HHeJ_T0055024.1 MGP_C3HHeJ_G0025569.1 mouse_genomes_project 2 72852091 72896743 - MGP_C3HHeJ_P0055024 Gpr155 protein_coding protein_coding MGP_C3HHeJ_T0055025.1 MGP_C3HHeJ_G0025569.1 mouse_genomes_project 2 72853123 72896774 - MGP_C3HHeJ_P0055025 Gpr155 protein_coding protein_coding MGP_C3HHeJ_T0055026.1 MGP_C3HHeJ_G0025569.1 mouse_genomes_project 2 72857780 72872842 - MGP_C3HHeJ_P0055026 Gpr155 protein_coding protein_coding MGP_C3HHeJ_T0055027.1 MGP_C3HHeJ_G0025569.1 mouse_genomes_project 2 72861025 72896729 - Gpr155 protein_coding processed_transcript MGP_C3HHeJ_T0055028.1 MGP_C3HHeJ_G0025569.1 mouse_genomes_project 2 72861025 72896729 - Gpr155 protein_coding retained_intron MGP_C3HHeJ_T0055029.1 MGP_C3HHeJ_G0025569.1 mouse_genomes_project 2 72872750 72880460 - Gpr155 protein_coding processed_transcript MGP_C3HHeJ_T0055030.1 MGP_C3HHeJ_G0025569.1 mouse_genomes_project 2 72891736 72896742 - Gpr155 protein_coding retained_intron MGP_C3HHeJ_T0059231.1 MGP_C3HHeJ_G0026677.1 mouse_genomes_project 2 177966219 178014216 + MGP_C3HHeJ_P0059231 Rab22a protein_coding protein_coding MGP_C3HHeJ_T0059232.1 MGP_C3HHeJ_G0026677.1 mouse_genomes_project 2 177966219 178014188 + MGP_C3HHeJ_P0059232 Rab22a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059233.1 MGP_C3HHeJ_G0026677.1 mouse_genomes_project 2 177966315 178008027 + MGP_C3HHeJ_P0059233 Rab22a protein_coding protein_coding MGP_C3HHeJ_T0056482.1 MGP_C3HHeJ_G0026040.1 mouse_genomes_project 2 120210299 120231881 - MGP_C3HHeJ_P0056482 Plcb2 protein_coding protein_coding MGP_C3HHeJ_T0056483.1 MGP_C3HHeJ_G0026040.1 mouse_genomes_project 2 120210778 120231802 - MGP_C3HHeJ_P0056483 Plcb2 protein_coding protein_coding MGP_C3HHeJ_T0056484.1 MGP_C3HHeJ_G0026040.1 mouse_genomes_project 2 120210962 120214153 - Plcb2 protein_coding retained_intron MGP_C3HHeJ_T0056485.1 MGP_C3HHeJ_G0026040.1 mouse_genomes_project 2 120211481 120212524 - Plcb2 protein_coding retained_intron MGP_C3HHeJ_T0056486.1 MGP_C3HHeJ_G0026040.1 mouse_genomes_project 2 120213599 120216892 - Plcb2 protein_coding retained_intron MGP_C3HHeJ_T0056487.1 MGP_C3HHeJ_G0026040.1 mouse_genomes_project 2 120217020 120231834 - Plcb2 protein_coding retained_intron MGP_C3HHeJ_T0058161.1 MGP_C3HHeJ_G0026441.1 mouse_genomes_project 2 157873141 157920534 + Chmp4b protein_coding processed_transcript MGP_C3HHeJ_T0058162.1 MGP_C3HHeJ_G0026441.1 mouse_genomes_project 2 157878635 157920539 + MGP_C3HHeJ_P0058162 Chmp4b protein_coding protein_coding MGP_C3HHeJ_T0058163.1 MGP_C3HHeJ_G0026441.1 mouse_genomes_project 2 157914580 157920035 + Chmp4b protein_coding retained_intron MGP_C3HHeJ_T0013582.1 MGP_C3HHeJ_G0011686.1 mouse_genomes_project 2 115985709 115986491 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013628.1 MGP_C3HHeJ_G0011732.1 mouse_genomes_project 2 139156245 139156715 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013605.1 MGP_C3HHeJ_G0011709.1 mouse_genomes_project 2 131500132 131500233 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101927.1 MGP_C3HHeJ_G0039892.1 mouse_genomes_project 2 131516570 131517696 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017705.1 MGP_C3HHeJ_G0015260.1 mouse_genomes_project 2 184512925 184515077 + 4921531C22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017706.1 MGP_C3HHeJ_G0015260.1 mouse_genomes_project 2 184513512 184514051 + 4921531C22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0057957.1 MGP_C3HHeJ_G0026375.1 mouse_genomes_project 2 155433552 155441418 - MGP_C3HHeJ_P0057957 Nrsn2 protein_coding protein_coding MGP_C3HHeJ_T0055286.1 MGP_C3HHeJ_G0025625.1 mouse_genomes_project 2 83606706 83671690 + MGP_C3HHeJ_P0055286 Fam171b protein_coding protein_coding MGP_C3HHeJ_T0055287.1 MGP_C3HHeJ_G0025625.1 mouse_genomes_project 2 83654857 83657235 + Fam171b protein_coding processed_transcript MGP_C3HHeJ_T0057236.1 MGP_C3HHeJ_G0026199.1 mouse_genomes_project 2 131083898 131134702 + MGP_C3HHeJ_P0057236 Zc3h6 protein_coding protein_coding MGP_C3HHeJ_T0057237.1 MGP_C3HHeJ_G0026199.1 mouse_genomes_project 2 131083905 131110379 + MGP_C3HHeJ_P0057237 Zc3h6 protein_coding protein_coding MGP_C3HHeJ_T0057619.1 MGP_C3HHeJ_G0026284.1 mouse_genomes_project 2 142222368 142305657 + MGP_C3HHeJ_P0057619 Ism1 protein_coding protein_coding MGP_C3HHeJ_T0057620.1 MGP_C3HHeJ_G0026284.1 mouse_genomes_project 2 142222368 142305658 + MGP_C3HHeJ_P0057620 Ism1 protein_coding protein_coding MGP_C3HHeJ_T0057235.1 MGP_C3HHeJ_G0026198.1 mouse_genomes_project 2 131083085 131084222 - MGP_C3HHeJ_P0057235 Gm10762 protein_coding protein_coding MGP_C3HHeJ_T0058607.1 MGP_C3HHeJ_G0026516.1 mouse_genomes_project 2 162161735 162255993 + Ppp1r16b protein_coding retained_intron MGP_C3HHeJ_T0058608.1 MGP_C3HHeJ_G0026516.1 mouse_genomes_project 2 162161735 162263287 + MGP_C3HHeJ_P0058608 Ppp1r16b protein_coding protein_coding MGP_C3HHeJ_T0058609.1 MGP_C3HHeJ_G0026516.1 mouse_genomes_project 2 162163070 162263287 + MGP_C3HHeJ_P0058609 Ppp1r16b protein_coding protein_coding MGP_C3HHeJ_T0058610.1 MGP_C3HHeJ_G0026516.1 mouse_genomes_project 2 162163456 162263287 + MGP_C3HHeJ_P0058610 Ppp1r16b protein_coding protein_coding MGP_C3HHeJ_T0058611.1 MGP_C3HHeJ_G0026516.1 mouse_genomes_project 2 162192257 162263287 + MGP_C3HHeJ_P0058611 Ppp1r16b protein_coding protein_coding MGP_C3HHeJ_T0057584.1 MGP_C3HHeJ_G0026275.1 mouse_genomes_project 2 138436973 138444286 + MGP_C3HHeJ_P0057584 Lamp5 protein_coding protein_coding MGP_C3HHeJ_T0057585.1 MGP_C3HHeJ_G0026275.1 mouse_genomes_project 2 138442681 138456969 + MGP_C3HHeJ_P0057585 Lamp5 protein_coding protein_coding MGP_C3HHeJ_T0057586.1 MGP_C3HHeJ_G0026275.1 mouse_genomes_project 2 138443006 138446249 + Lamp5 protein_coding retained_intron MGP_C3HHeJ_T0057587.1 MGP_C3HHeJ_G0026275.1 mouse_genomes_project 2 138443006 138443968 + Lamp5 protein_coding processed_transcript MGP_C3HHeJ_T0057588.1 MGP_C3HHeJ_G0026275.1 mouse_genomes_project 2 138444185 138456957 + Lamp5 protein_coding processed_transcript MGP_C3HHeJ_T0056435.1 MGP_C3HHeJ_G0026027.1 mouse_genomes_project 2 118276982 118277915 - MGP_C3HHeJ_P0056435 Olfr1466 protein_coding protein_coding MGP_C3HHeJ_T0003897.1 MGP_C3HHeJ_G0003476.1 mouse_genomes_project 2 37350011 37351557 - Gm13496 antisense antisense MGP_C3HHeJ_T0003938.1 MGP_C3HHeJ_G0003504.1 mouse_genomes_project 2 72867401 72874664 + Gm13703 antisense antisense MGP_C3HHeJ_T0007179.1 MGP_C3HHeJ_G0005884.1 mouse_genomes_project 2 93172315 93191365 + Gm13816 lincRNA lincRNA MGP_C3HHeJ_T0100428.1 MGP_C3HHeJ_G0038622.1 mouse_genomes_project 2 7273993 7274121 - Gm23608 snoRNA snoRNA MGP_C3HHeJ_T0017573.1 MGP_C3HHeJ_G0015197.1 mouse_genomes_project 2 84822044 84829894 - processed_transcript processed_transcript MGP_C3HHeJ_T0056450.1 MGP_C3HHeJ_G0026032.1 mouse_genomes_project 2 119680466 119734063 - MGP_C3HHeJ_P0056450 Fsip1 protein_coding protein_coding MGP_C3HHeJ_T0056451.1 MGP_C3HHeJ_G0026032.1 mouse_genomes_project 2 119721503 119734053 - MGP_C3HHeJ_P0056451 Fsip1 protein_coding protein_coding MGP_C3HHeJ_T0054185.1 MGP_C3HHeJ_G0025413.1 mouse_genomes_project 2 35169620 35170556 - MGP_C3HHeJ_P0054185 Olfr353 protein_coding protein_coding MGP_C3HHeJ_T0053250.1 MGP_C3HHeJ_G0025260.1 mouse_genomes_project 2 26380239 26387807 - MGP_C3HHeJ_P0053250 Cel protein_coding protein_coding MGP_C3HHeJ_T0053251.1 MGP_C3HHeJ_G0025260.1 mouse_genomes_project 2 26384961 26387848 - Cel protein_coding processed_transcript MGP_C3HHeJ_T0055487.1 MGP_C3HHeJ_G0025735.1 mouse_genomes_project 2 87495923 87496877 + MGP_C3HHeJ_P0055487 Olfr1124 protein_coding protein_coding MGP_C3HHeJ_T0055478.1 MGP_C3HHeJ_G0025726.1 mouse_genomes_project 2 87152839 87153778 - MGP_C3HHeJ_P0055478 Olfr1111 protein_coding protein_coding MGP_C3HHeJ_T0101175.1 MGP_C3HHeJ_G0039324.1 mouse_genomes_project 2 106334370 106334760 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0057935.1 MGP_C3HHeJ_G0026370.1 mouse_genomes_project 2 155207775 155213312 + MGP_C3HHeJ_P0057935 Tcf15 protein_coding protein_coding MGP_C3HHeJ_T0099230.1 MGP_C3HHeJ_G0037424.1 mouse_genomes_project 2 170644197 170644300 + Gm24477 snRNA snRNA MGP_C3HHeJ_T0017702.1 MGP_C3HHeJ_G0015259.1 mouse_genomes_project 2 179184205 179186778 - Gm14617 processed_transcript retained_intron MGP_C3HHeJ_T0017703.1 MGP_C3HHeJ_G0015259.1 mouse_genomes_project 2 179184332 179189318 - Gm14617 processed_transcript lincRNA MGP_C3HHeJ_T0017704.1 MGP_C3HHeJ_G0015259.1 mouse_genomes_project 2 179186200 179189195 - Gm14617 processed_transcript lincRNA MGP_C3HHeJ_T0013694.1 MGP_C3HHeJ_G0011798.1 mouse_genomes_project 2 160238573 160239117 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053765.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30394636 30441912 - MGP_C3HHeJ_P0053765 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053766.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30394636 30441873 - MGP_C3HHeJ_P0053766 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053767.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30394636 30441894 - MGP_C3HHeJ_P0053767 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053768.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30394636 30441900 - MGP_C3HHeJ_P0053768 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053769.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30394636 30441948 - MGP_C3HHeJ_P0053769 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053770.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30394636 30441893 - MGP_C3HHeJ_P0053770 Dnm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053771.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30394643 30441844 - MGP_C3HHeJ_P0053771 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053772.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30394662 30407808 - MGP_C3HHeJ_P0053772 Dnm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053773.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30395006 30441880 - MGP_C3HHeJ_P0053773 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053774.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30395089 30396801 - Dnm1 protein_coding retained_intron MGP_C3HHeJ_T0053775.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30395640 30399089 - MGP_C3HHeJ_P0053775 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053776.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30395644 30441912 - MGP_C3HHeJ_P0053776 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053777.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30396015 30399059 - MGP_C3HHeJ_P0053777 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053778.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30396428 30399055 - MGP_C3HHeJ_P0053778 Dnm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053779.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30398392 30404563 - Dnm1 protein_coding processed_transcript MGP_C3HHeJ_T0053780.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30398407 30399243 - Dnm1 protein_coding retained_intron MGP_C3HHeJ_T0053781.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30427063 30441861 - MGP_C3HHeJ_P0053781 Dnm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010307.1 MGP_C3HHeJ_G0008440.1 mouse_genomes_project 2 27751189 27751254 + Mir219b miRNA miRNA MGP_C3HHeJ_T0055542.1 MGP_C3HHeJ_G0025779.1 mouse_genomes_project 2 88575066 88575978 + MGP_C3HHeJ_P0055542 Olfr1183 protein_coding protein_coding MGP_C3HHeJ_T0055594.1 MGP_C3HHeJ_G0025824.1 mouse_genomes_project 2 89643045 89643990 - MGP_C3HHeJ_P0055594 Olfr1241 protein_coding protein_coding MGP_C3HHeJ_T0017655.1 MGP_C3HHeJ_G0015236.1 mouse_genomes_project 2 134072264 134101218 - 5330413P13Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017656.1 MGP_C3HHeJ_G0015236.1 mouse_genomes_project 2 134097184 134101223 - 5330413P13Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017657.1 MGP_C3HHeJ_G0015236.1 mouse_genomes_project 2 134097401 134101186 - 5330413P13Rik processed_transcript processed_transcript MGP_C3HHeJ_T0010296.1 MGP_C3HHeJ_G0008429.1 mouse_genomes_project 2 22699823 22699890 - Gm24328 miRNA miRNA MGP_C3HHeJ_T0053012.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24099703 24118639 - MGP_C3HHeJ_P0053012 Snapc4 protein_coding protein_coding MGP_C3HHeJ_T0053013.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24099705 24101963 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053014.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24099712 24118643 - MGP_C3HHeJ_P0053014 Snapc4 protein_coding protein_coding MGP_C3HHeJ_T0053015.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24099714 24118622 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053016.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24103552 24104709 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053017.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24106395 24110570 - MGP_C3HHeJ_P0053017 Snapc4 protein_coding protein_coding MGP_C3HHeJ_T0053018.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24106424 24110550 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053019.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24106445 24108081 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053020.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24106922 24111067 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053021.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24107771 24110294 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053022.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24107771 24118625 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053023.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24110500 24111677 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053024.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24114576 24118643 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053025.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24115281 24118616 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053337.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27660266 27687185 - MGP_C3HHeJ_P0053337 Trub2 protein_coding protein_coding MGP_C3HHeJ_T0053341.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27674362 27687197 - MGP_C3HHeJ_P0053341 Trub2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053342.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27675778 27688039 - MGP_C3HHeJ_P0053342 Trub2 protein_coding protein_coding MGP_C3HHeJ_T0053343.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27677200 27687171 - MGP_C3HHeJ_P0053343 Trub2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053344.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27677269 27687159 - MGP_C3HHeJ_P0053344 Trub2 protein_coding protein_coding MGP_C3HHeJ_T0053345.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27678106 27687208 - MGP_C3HHeJ_P0053345 Trub2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053346.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27678265 27681881 - Trub2 protein_coding retained_intron MGP_C3HHeJ_T0053347.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27678719 27681735 - Trub2 protein_coding retained_intron MGP_C3HHeJ_T0053348.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27682757 27687167 - Trub2 protein_coding retained_intron MGP_C3HHeJ_T0053349.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27684458 27687170 - Trub2 protein_coding retained_intron MGP_C3HHeJ_T0004053.1 MGP_C3HHeJ_G0003582.1 mouse_genomes_project 2 154911312 154912958 - Rspo4os antisense antisense MGP_C3HHeJ_T0101169.1 MGP_C3HHeJ_G0039320.1 mouse_genomes_project 2 37518536 37523286 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101170.1 MGP_C3HHeJ_G0039320.1 mouse_genomes_project 2 37522267 37523040 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0003993.1 MGP_C3HHeJ_G0003538.1 mouse_genomes_project 2 119784482 119787727 + 1700054M17Rik antisense antisense MGP_C3HHeJ_T0101869.1 MGP_C3HHeJ_G0039834.1 mouse_genomes_project 2 9178258 9188375 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007061.1 MGP_C3HHeJ_G0005789.1 mouse_genomes_project 2 14603666 14607411 - Gm13322 lincRNA lincRNA MGP_C3HHeJ_T0056297.1 MGP_C3HHeJ_G0025966.1 mouse_genomes_project 2 111554597 111605477 + MGP_C3HHeJ_P0056297 Slc5a12 protein_coding protein_coding MGP_C3HHeJ_T0056298.1 MGP_C3HHeJ_G0025966.1 mouse_genomes_project 2 111554606 111605484 + MGP_C3HHeJ_P0056298 Slc5a12 protein_coding protein_coding MGP_C3HHeJ_T0056299.1 MGP_C3HHeJ_G0025966.1 mouse_genomes_project 2 111554727 111583299 + Slc5a12 protein_coding retained_intron MGP_C3HHeJ_T0056300.1 MGP_C3HHeJ_G0025966.1 mouse_genomes_project 2 111555032 111563697 + Slc5a12 protein_coding processed_transcript MGP_C3HHeJ_T0056301.1 MGP_C3HHeJ_G0025966.1 mouse_genomes_project 2 111563631 111604293 + Slc5a12 protein_coding processed_transcript MGP_C3HHeJ_T0052771.1 MGP_C3HHeJ_G0025171.1 mouse_genomes_project 2 22940377 22941643 + MGP_C3HHeJ_P0052771 Lrrc26 protein_coding protein_coding MGP_C3HHeJ_T0013345.1 MGP_C3HHeJ_G0011449.1 mouse_genomes_project 2 33183490 33183657 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099228.1 MGP_C3HHeJ_G0037422.1 mouse_genomes_project 2 167205750 167205853 + Gm25881 snRNA snRNA MGP_C3HHeJ_T0056253.1 MGP_C3HHeJ_G0025955.1 mouse_genomes_project 2 107832678 107844455 - MGP_C3HHeJ_P0056253 Arl14ep protein_coding protein_coding MGP_C3HHeJ_T0056254.1 MGP_C3HHeJ_G0025955.1 mouse_genomes_project 2 107834587 107840568 - MGP_C3HHeJ_P0056254 Arl14ep protein_coding protein_coding MGP_C3HHeJ_T0056255.1 MGP_C3HHeJ_G0025955.1 mouse_genomes_project 2 107835348 107839454 - Arl14ep protein_coding retained_intron MGP_C3HHeJ_T0056256.1 MGP_C3HHeJ_G0025955.1 mouse_genomes_project 2 107837541 107844428 - Arl14ep protein_coding retained_intron MGP_C3HHeJ_T0007324.1 MGP_C3HHeJ_G0006001.1 mouse_genomes_project 2 173022181 173022820 + 1700017J07Rik lincRNA lincRNA MGP_C3HHeJ_T0013459.1 MGP_C3HHeJ_G0011563.1 mouse_genomes_project 2 73331970 73332234 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057916.1 MGP_C3HHeJ_G0026362.1 mouse_genomes_project 2 154740922 154746221 + MGP_C3HHeJ_P0057916 Tmem74b protein_coding protein_coding MGP_C3HHeJ_T0057917.1 MGP_C3HHeJ_G0026362.1 mouse_genomes_project 2 154741225 154751036 + MGP_C3HHeJ_P0057917 Tmem74b protein_coding protein_coding MGP_C3HHeJ_T0007251.1 MGP_C3HHeJ_G0005939.1 mouse_genomes_project 2 135740666 135766446 + A430048G15Rik lincRNA lincRNA MGP_C3HHeJ_T0013446.1 MGP_C3HHeJ_G0011550.1 mouse_genomes_project 2 69149893 69151080 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101913.1 MGP_C3HHeJ_G0039878.1 mouse_genomes_project 2 88431444 88432588 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0055434.1 MGP_C3HHeJ_G0025684.1 mouse_genomes_project 2 86000350 86002577 - MGP_C3HHeJ_P0055434 Olfr1042 protein_coding protein_coding MGP_C3HHeJ_T0056319.1 MGP_C3HHeJ_G0025979.1 mouse_genomes_project 2 112429223 112429893 - MGP_C3HHeJ_P0056319 protein_coding protein_coding MGP_C3HHeJ_T0013601.1 MGP_C3HHeJ_G0011705.1 mouse_genomes_project 2 129773014 129774858 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059015.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170793106 170832725 + Cse1l protein_coding processed_transcript MGP_C3HHeJ_T0059016.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170793125 170834564 + MGP_C3HHeJ_P0059016 Cse1l protein_coding protein_coding MGP_C3HHeJ_T0059017.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170793177 170834276 + MGP_C3HHeJ_P0059017 Cse1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059018.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170802793 170833968 + MGP_C3HHeJ_P0059018 Cse1l protein_coding protein_coding MGP_C3HHeJ_T0059019.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170815037 170833983 + MGP_C3HHeJ_P0059019 Cse1l protein_coding protein_coding MGP_C3HHeJ_T0059020.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170815072 170820572 + Cse1l protein_coding retained_intron MGP_C3HHeJ_T0059021.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170815231 170823256 + Cse1l protein_coding retained_intron MGP_C3HHeJ_T0059022.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170815275 170825590 + Cse1l protein_coding processed_transcript MGP_C3HHeJ_T0059023.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170822923 170833028 + Cse1l protein_coding retained_intron MGP_C3HHeJ_T0059024.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170822950 170829629 + MGP_C3HHeJ_P0059024 Cse1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059025.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170825261 170829425 + Cse1l protein_coding retained_intron MGP_C3HHeJ_T0059026.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170829007 170829994 + Cse1l protein_coding retained_intron MGP_C3HHeJ_T0056086.1 MGP_C3HHeJ_G0025922.1 mouse_genomes_project 2 103796698 103820133 + MGP_C3HHeJ_P0056086 Apip protein_coding protein_coding MGP_C3HHeJ_T0056087.1 MGP_C3HHeJ_G0025922.1 mouse_genomes_project 2 103796718 103820120 + Apip protein_coding processed_transcript MGP_C3HHeJ_T0056088.1 MGP_C3HHeJ_G0025922.1 mouse_genomes_project 2 103805966 103819279 + Apip protein_coding processed_transcript MGP_C3HHeJ_T0056089.1 MGP_C3HHeJ_G0025922.1 mouse_genomes_project 2 103819324 103820127 + Apip protein_coding processed_transcript MGP_C3HHeJ_T0059297.1 MGP_C3HHeJ_G0026693.1 mouse_genomes_project 2 182913419 182916686 - MGP_C3HHeJ_P0059297 Ppp1r3d protein_coding protein_coding MGP_C3HHeJ_T0054720.1 MGP_C3HHeJ_G0025510.1 mouse_genomes_project 2 64447057 64496462 - MGP_C3HHeJ_P0054720 Slc38a11 protein_coding protein_coding MGP_C3HHeJ_T0054721.1 MGP_C3HHeJ_G0025510.1 mouse_genomes_project 2 64447112 64496918 - MGP_C3HHeJ_P0054721 Slc38a11 protein_coding protein_coding MGP_C3HHeJ_T0054722.1 MGP_C3HHeJ_G0025510.1 mouse_genomes_project 2 64455127 64497033 - MGP_C3HHeJ_P0054722 Slc38a11 protein_coding protein_coding MGP_C3HHeJ_T0054723.1 MGP_C3HHeJ_G0025510.1 mouse_genomes_project 2 64482474 64497033 - Slc38a11 protein_coding processed_transcript MGP_C3HHeJ_T0054724.1 MGP_C3HHeJ_G0025510.1 mouse_genomes_project 2 64483038 64496999 - MGP_C3HHeJ_P0054724 Slc38a11 protein_coding protein_coding MGP_C3HHeJ_T0054725.1 MGP_C3HHeJ_G0025510.1 mouse_genomes_project 2 64485887 64496922 - Slc38a11 protein_coding processed_transcript MGP_C3HHeJ_T0054726.1 MGP_C3HHeJ_G0025510.1 mouse_genomes_project 2 64487796 64497029 - Slc38a11 protein_coding processed_transcript MGP_C3HHeJ_T0003885.1 MGP_C3HHeJ_G0003467.1 mouse_genomes_project 2 31970219 31977993 + Nron antisense antisense MGP_C3HHeJ_T0003886.1 MGP_C3HHeJ_G0003467.1 mouse_genomes_project 2 31970231 31976857 + Nron antisense antisense MGP_C3HHeJ_T0003887.1 MGP_C3HHeJ_G0003467.1 mouse_genomes_project 2 31970262 31975840 + Nron antisense antisense MGP_C3HHeJ_T0057555.1 MGP_C3HHeJ_G0026271.1 mouse_genomes_project 2 136835949 136892469 - MGP_C3HHeJ_P0057555 Hao1 protein_coding protein_coding MGP_C3HHeJ_T0057556.1 MGP_C3HHeJ_G0026271.1 mouse_genomes_project 2 136867418 136892408 - Hao1 protein_coding processed_transcript MGP_C3HHeJ_T0003830.1 MGP_C3HHeJ_G0003424.1 mouse_genomes_project 2 12090854 12118058 - Gm10848 antisense antisense MGP_C3HHeJ_T0054171.1 MGP_C3HHeJ_G0025400.1 mouse_genomes_project 2 34725679 34726618 + MGP_C3HHeJ_P0054171 Olfr340 protein_coding protein_coding MGP_C3HHeJ_T0017662.1 MGP_C3HHeJ_G0015240.1 mouse_genomes_project 2 153634068 153635510 + E130215H24Rik processed_transcript processed_transcript MGP_C3HHeJ_T0058306.1 MGP_C3HHeJ_G0026469.1 mouse_genomes_project 2 159288303 159325294 - MGP_C3HHeJ_P0058306 6430550D23Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058311.1 MGP_C3HHeJ_G0026469.1 mouse_genomes_project 2 159317820 159321835 - MGP_C3HHeJ_P0058311 6430550D23Rik protein_coding protein_coding MGP_C3HHeJ_T0058312.1 MGP_C3HHeJ_G0026469.1 mouse_genomes_project 2 159317987 159325310 - 6430550D23Rik protein_coding retained_intron MGP_C3HHeJ_T0058313.1 MGP_C3HHeJ_G0026469.1 mouse_genomes_project 2 159318646 159321294 - MGP_C3HHeJ_P0058313 6430550D23Rik protein_coding protein_coding MGP_C3HHeJ_T0058314.1 MGP_C3HHeJ_G0026469.1 mouse_genomes_project 2 159320550 159325306 - MGP_C3HHeJ_P0058314 6430550D23Rik protein_coding protein_coding MGP_C3HHeJ_T0058315.1 MGP_C3HHeJ_G0026469.1 mouse_genomes_project 2 159320643 159325364 - MGP_C3HHeJ_P0058315 6430550D23Rik protein_coding protein_coding MGP_C3HHeJ_T0058316.1 MGP_C3HHeJ_G0026469.1 mouse_genomes_project 2 159320730 159321835 - MGP_C3HHeJ_P0058316 6430550D23Rik protein_coding protein_coding MGP_C3HHeJ_T0058317.1 MGP_C3HHeJ_G0026469.1 mouse_genomes_project 2 159320773 159321544 - MGP_C3HHeJ_P0058317 6430550D23Rik protein_coding protein_coding MGP_C3HHeJ_T0058318.1 MGP_C3HHeJ_G0026469.1 mouse_genomes_project 2 159320805 159321544 - MGP_C3HHeJ_P0058318 6430550D23Rik protein_coding protein_coding MGP_C3HHeJ_T0057592.1 MGP_C3HHeJ_G0026277.1 mouse_genomes_project 2 138905043 138918649 + protein_coding processed_transcript MGP_C3HHeJ_T0057593.1 MGP_C3HHeJ_G0026277.1 mouse_genomes_project 2 138905088 138909881 + protein_coding processed_transcript MGP_C3HHeJ_T0057594.1 MGP_C3HHeJ_G0026277.1 mouse_genomes_project 2 138905124 138955646 + MGP_C3HHeJ_P0057594 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057595.1 MGP_C3HHeJ_G0026277.1 mouse_genomes_project 2 138905314 138917348 + protein_coding processed_transcript MGP_C3HHeJ_T0057596.1 MGP_C3HHeJ_G0026277.1 mouse_genomes_project 2 138918652 138954344 + MGP_C3HHeJ_P0057596 protein_coding protein_coding MGP_C3HHeJ_T0057597.1 MGP_C3HHeJ_G0026277.1 mouse_genomes_project 2 138934690 138960335 + MGP_C3HHeJ_P0057597 protein_coding unknown_likely_coding MGP_C3HHeJ_T0057598.1 MGP_C3HHeJ_G0026277.1 mouse_genomes_project 2 138957238 138958034 + protein_coding processed_transcript MGP_C3HHeJ_T0057599.1 MGP_C3HHeJ_G0026277.1 mouse_genomes_project 2 138957253 138960395 + protein_coding processed_transcript MGP_C3HHeJ_T0100486.1 MGP_C3HHeJ_G0038680.1 mouse_genomes_project 2 132450977 132451063 + Gm23187 snoRNA snoRNA MGP_C3HHeJ_T0007181.1 MGP_C3HHeJ_G0005886.1 mouse_genomes_project 2 93920055 93937104 + Gm10804 lincRNA lincRNA MGP_C3HHeJ_T0007182.1 MGP_C3HHeJ_G0005886.1 mouse_genomes_project 2 93920056 93923956 + Gm10804 lincRNA lincRNA MGP_C3HHeJ_T0007183.1 MGP_C3HHeJ_G0005886.1 mouse_genomes_project 2 93920057 93933632 + Gm10804 lincRNA lincRNA MGP_C3HHeJ_T0007184.1 MGP_C3HHeJ_G0005886.1 mouse_genomes_project 2 93935671 93935908 + Gm10804 lincRNA lincRNA MGP_C3HHeJ_T0059309.1 MGP_C3HHeJ_G0026697.1 mouse_genomes_project 2 184444375 184512719 - MGP_C3HHeJ_P0059309 Taf4 protein_coding protein_coding MGP_C3HHeJ_T0059310.1 MGP_C3HHeJ_G0026697.1 mouse_genomes_project 2 184445662 184473126 - MGP_C3HHeJ_P0059310 Taf4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0059311.1 MGP_C3HHeJ_G0026697.1 mouse_genomes_project 2 184454414 184455395 - Taf4 protein_coding processed_transcript MGP_C3HHeJ_T0059312.1 MGP_C3HHeJ_G0026697.1 mouse_genomes_project 2 184455190 184462527 - Taf4 protein_coding processed_transcript MGP_C3HHeJ_T0017663.1 MGP_C3HHeJ_G0015241.1 mouse_genomes_project 2 155407428 155440104 + Gm14164 processed_transcript processed_transcript MGP_C3HHeJ_T0017664.1 MGP_C3HHeJ_G0015241.1 mouse_genomes_project 2 155439527 155439929 + Gm14164 processed_transcript processed_transcript MGP_C3HHeJ_T0003986.1 MGP_C3HHeJ_G0003535.1 mouse_genomes_project 2 115325630 115332650 + C130080G10Rik antisense antisense MGP_C3HHeJ_T0003987.1 MGP_C3HHeJ_G0003535.1 mouse_genomes_project 2 115325691 115332627 + C130080G10Rik antisense antisense MGP_C3HHeJ_T0003988.1 MGP_C3HHeJ_G0003535.1 mouse_genomes_project 2 115326541 115332130 + C130080G10Rik antisense antisense MGP_C3HHeJ_T0003989.1 MGP_C3HHeJ_G0003535.1 mouse_genomes_project 2 115327570 115332435 + C130080G10Rik antisense antisense MGP_C3HHeJ_T0003990.1 MGP_C3HHeJ_G0003535.1 mouse_genomes_project 2 115327595 115337019 + C130080G10Rik antisense antisense MGP_C3HHeJ_T0099190.1 MGP_C3HHeJ_G0037384.1 mouse_genomes_project 2 42927612 42927721 + Gm22867 snRNA snRNA MGP_C3HHeJ_T0052940.1 MGP_C3HHeJ_G0025203.1 mouse_genomes_project 2 23453233 23455764 + MGP_C3HHeJ_P0052940 Lcn3 protein_coding protein_coding MGP_C3HHeJ_T0003870.1 MGP_C3HHeJ_G0003453.1 mouse_genomes_project 2 28364708 28366331 + Gm16323 antisense antisense MGP_C3HHeJ_T0007048.1 MGP_C3HHeJ_G0005778.1 mouse_genomes_project 2 4602757 4604124 + Gm28641 lincRNA lincRNA MGP_C3HHeJ_T0055562.1 MGP_C3HHeJ_G0025798.1 mouse_genomes_project 2 89076715 89077651 - MGP_C3HHeJ_P0055562 Olfr1211 protein_coding protein_coding MGP_C3HHeJ_T0058828.1 MGP_C3HHeJ_G0026584.1 mouse_genomes_project 2 168432072 168434738 + MGP_C3HHeJ_P0058828 Wfdc13 protein_coding protein_coding MGP_C3HHeJ_T0056309.1 MGP_C3HHeJ_G0025970.1 mouse_genomes_project 2 112081498 112100064 - MGP_C3HHeJ_P0056309 Gm15130 protein_coding protein_coding MGP_C3HHeJ_T0057866.1 MGP_C3HHeJ_G0026353.1 mouse_genomes_project 2 153864349 153888410 + Gins1 protein_coding processed_transcript MGP_C3HHeJ_T0057867.1 MGP_C3HHeJ_G0026353.1 mouse_genomes_project 2 153869465 153893793 + MGP_C3HHeJ_P0057867 Gins1 protein_coding protein_coding MGP_C3HHeJ_T0057868.1 MGP_C3HHeJ_G0026353.1 mouse_genomes_project 2 153869488 153888604 + Gins1 protein_coding processed_transcript MGP_C3HHeJ_T0057869.1 MGP_C3HHeJ_G0026353.1 mouse_genomes_project 2 153875153 153890052 + Gins1 protein_coding processed_transcript MGP_C3HHeJ_T0053456.1 MGP_C3HHeJ_G0025292.1 mouse_genomes_project 2 28114595 28119572 - D2Wsu81e protein_coding retained_intron MGP_C3HHeJ_T0053457.1 MGP_C3HHeJ_G0025292.1 mouse_genomes_project 2 28114595 28119585 - D2Wsu81e protein_coding retained_intron MGP_C3HHeJ_T0053458.1 MGP_C3HHeJ_G0025292.1 mouse_genomes_project 2 28114610 28118648 - D2Wsu81e protein_coding retained_intron MGP_C3HHeJ_T0053459.1 MGP_C3HHeJ_G0025292.1 mouse_genomes_project 2 28114613 28119127 - D2Wsu81e protein_coding retained_intron MGP_C3HHeJ_T0053460.1 MGP_C3HHeJ_G0025292.1 mouse_genomes_project 2 28114613 28119593 - MGP_C3HHeJ_P0053460 D2Wsu81e protein_coding protein_coding MGP_C3HHeJ_T0053461.1 MGP_C3HHeJ_G0025292.1 mouse_genomes_project 2 28114615 28119602 - D2Wsu81e protein_coding retained_intron MGP_C3HHeJ_T0053462.1 MGP_C3HHeJ_G0025292.1 mouse_genomes_project 2 28116073 28119108 - D2Wsu81e protein_coding processed_transcript MGP_C3HHeJ_T0053463.1 MGP_C3HHeJ_G0025292.1 mouse_genomes_project 2 28117505 28119598 - D2Wsu81e protein_coding retained_intron MGP_C3HHeJ_T0007281.1 MGP_C3HHeJ_G0005964.1 mouse_genomes_project 2 158361744 158364034 - 2310005A03Rik lincRNA lincRNA MGP_C3HHeJ_T0013595.1 MGP_C3HHeJ_G0011699.1 mouse_genomes_project 2 123396141 123396820 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011422.1 MGP_C3HHeJ_G0009555.1 mouse_genomes_project 2 150115114 150115572 + Nkx2-2os misc_RNA misc_RNA MGP_C3HHeJ_T0011420.1 MGP_C3HHeJ_G0009553.1 mouse_genomes_project 2 148232181 148232506 - Gm22390 misc_RNA misc_RNA MGP_C3HHeJ_T0056917.1 MGP_C3HHeJ_G0026119.1 mouse_genomes_project 2 123562404 123633521 + MGP_C3HHeJ_P0056917 Casc4 protein_coding protein_coding MGP_C3HHeJ_T0056918.1 MGP_C3HHeJ_G0026119.1 mouse_genomes_project 2 123562404 123633521 + MGP_C3HHeJ_P0056918 Casc4 protein_coding protein_coding MGP_C3HHeJ_T0056919.1 MGP_C3HHeJ_G0026119.1 mouse_genomes_project 2 123562563 123597192 + Casc4 protein_coding retained_intron MGP_C3HHeJ_T0056920.1 MGP_C3HHeJ_G0026119.1 mouse_genomes_project 2 123562564 123603207 + Casc4 protein_coding retained_intron MGP_C3HHeJ_T0056921.1 MGP_C3HHeJ_G0026119.1 mouse_genomes_project 2 123562564 123633406 + MGP_C3HHeJ_P0056921 Casc4 protein_coding protein_coding MGP_C3HHeJ_T0056922.1 MGP_C3HHeJ_G0026119.1 mouse_genomes_project 2 123562564 123633368 + MGP_C3HHeJ_P0056922 Casc4 protein_coding protein_coding MGP_C3HHeJ_T0056923.1 MGP_C3HHeJ_G0026119.1 mouse_genomes_project 2 123563139 123631152 + Casc4 protein_coding processed_transcript MGP_C3HHeJ_T0056924.1 MGP_C3HHeJ_G0026119.1 mouse_genomes_project 2 123595789 123631117 + MGP_C3HHeJ_P0056924 Casc4 protein_coding protein_coding MGP_C3HHeJ_T0013702.1 MGP_C3HHeJ_G0011806.1 mouse_genomes_project 2 164413679 164414537 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011432.1 MGP_C3HHeJ_G0009565.1 mouse_genomes_project 2 185426282 185426400 + Gm22842 misc_RNA misc_RNA MGP_C3HHeJ_T0053007.1 MGP_C3HHeJ_G0025217.1 mouse_genomes_project 2 24085062 24089042 - Dnlz protein_coding processed_transcript MGP_C3HHeJ_T0053008.1 MGP_C3HHeJ_G0025217.1 mouse_genomes_project 2 24085062 24089052 - MGP_C3HHeJ_P0053008 Dnlz protein_coding protein_coding MGP_C3HHeJ_T0059389.1 MGP_C3HHeJ_G0026716.1 mouse_genomes_project 2 185235312 185279638 - MGP_C3HHeJ_P0059389 Dido1 protein_coding protein_coding MGP_C3HHeJ_T0059390.1 MGP_C3HHeJ_G0026716.1 mouse_genomes_project 2 185245621 185287287 - MGP_C3HHeJ_P0059390 Dido1 protein_coding protein_coding MGP_C3HHeJ_T0059391.1 MGP_C3HHeJ_G0026716.1 mouse_genomes_project 2 185245623 185253250 - MGP_C3HHeJ_P0059391 Dido1 protein_coding protein_coding MGP_C3HHeJ_T0059392.1 MGP_C3HHeJ_G0026716.1 mouse_genomes_project 2 185246546 185279638 - MGP_C3HHeJ_P0059392 Dido1 protein_coding protein_coding MGP_C3HHeJ_T0059393.1 MGP_C3HHeJ_G0026716.1 mouse_genomes_project 2 185258349 185287287 - MGP_C3HHeJ_P0059393 Dido1 protein_coding protein_coding MGP_C3HHeJ_T0059394.1 MGP_C3HHeJ_G0026716.1 mouse_genomes_project 2 185258364 185279638 - MGP_C3HHeJ_P0059394 Dido1 protein_coding protein_coding MGP_C3HHeJ_T0059395.1 MGP_C3HHeJ_G0026716.1 mouse_genomes_project 2 185262317 185279280 - Dido1 protein_coding processed_transcript MGP_C3HHeJ_T0004029.1 MGP_C3HHeJ_G0003564.1 mouse_genomes_project 2 137534282 137580299 - 4930545L23Rik antisense antisense MGP_C3HHeJ_T0057166.1 MGP_C3HHeJ_G0026180.1 mouse_genomes_project 2 129541460 129609263 - MGP_C3HHeJ_P0057166 Kcnip3 protein_coding protein_coding MGP_C3HHeJ_T0057167.1 MGP_C3HHeJ_G0026180.1 mouse_genomes_project 2 129541460 129609263 - MGP_C3HHeJ_P0057167 Kcnip3 protein_coding protein_coding MGP_C3HHeJ_T0057168.1 MGP_C3HHeJ_G0026180.1 mouse_genomes_project 2 129543088 129568805 - MGP_C3HHeJ_P0057168 Kcnip3 protein_coding protein_coding MGP_C3HHeJ_T0057169.1 MGP_C3HHeJ_G0026180.1 mouse_genomes_project 2 129543170 129609987 - Kcnip3 protein_coding processed_transcript MGP_C3HHeJ_T0013696.1 MGP_C3HHeJ_G0011800.1 mouse_genomes_project 2 160551362 160551722 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053026.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24121550 24128065 - MGP_C3HHeJ_P0053026 Sdccag3 protein_coding protein_coding MGP_C3HHeJ_T0053027.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24121550 24128040 - MGP_C3HHeJ_P0053027 Sdccag3 protein_coding protein_coding MGP_C3HHeJ_T0053028.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24121550 24128046 - MGP_C3HHeJ_P0053028 Sdccag3 protein_coding protein_coding MGP_C3HHeJ_T0053029.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24121550 24128053 - MGP_C3HHeJ_P0053029 Sdccag3 protein_coding protein_coding MGP_C3HHeJ_T0053030.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24121551 24126330 - Sdccag3 protein_coding processed_transcript MGP_C3HHeJ_T0053031.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24122303 24123962 - Sdccag3 protein_coding processed_transcript MGP_C3HHeJ_T0053032.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24122312 24124358 - Sdccag3 protein_coding processed_transcript MGP_C3HHeJ_T0053033.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24125403 24128032 - Sdccag3 protein_coding processed_transcript MGP_C3HHeJ_T0053034.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24125403 24128055 - Sdccag3 protein_coding processed_transcript MGP_C3HHeJ_T0053035.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24125761 24128044 - Sdccag3 protein_coding processed_transcript MGP_C3HHeJ_T0053036.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24125853 24127443 - MGP_C3HHeJ_P0053036 Sdccag3 protein_coding protein_coding MGP_C3HHeJ_T0053037.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24125874 24128016 - Sdccag3 protein_coding processed_transcript MGP_C3HHeJ_T0053038.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24126304 24127914 - Sdccag3 protein_coding processed_transcript MGP_C3HHeJ_T0055086.1 MGP_C3HHeJ_G0025583.1 mouse_genomes_project 2 74234482 74274814 + MGP_C3HHeJ_P0055086 Hoxd3 protein_coding protein_coding MGP_C3HHeJ_T0055091.1 MGP_C3HHeJ_G0025583.1 mouse_genomes_project 2 74255463 74270758 + MGP_C3HHeJ_P0055091 Hoxd3 protein_coding protein_coding MGP_C3HHeJ_T0055092.1 MGP_C3HHeJ_G0025583.1 mouse_genomes_project 2 74258978 74274458 + MGP_C3HHeJ_P0055092 Hoxd3 protein_coding protein_coding MGP_C3HHeJ_T0055093.1 MGP_C3HHeJ_G0025583.1 mouse_genomes_project 2 74262082 74274443 + MGP_C3HHeJ_P0055093 Hoxd3 protein_coding protein_coding MGP_C3HHeJ_T0055094.1 MGP_C3HHeJ_G0025583.1 mouse_genomes_project 2 74272216 74273139 + MGP_C3HHeJ_P0055094 Hoxd3 protein_coding protein_coding MGP_C3HHeJ_T0055095.1 MGP_C3HHeJ_G0025583.1 mouse_genomes_project 2 74272264 74274985 + Hoxd3 protein_coding retained_intron MGP_C3HHeJ_T0057490.1 MGP_C3HHeJ_G0026257.1 mouse_genomes_project 2 134294834 134391396 - MGP_C3HHeJ_P0057490 Slc23a2 protein_coding protein_coding MGP_C3HHeJ_T0057491.1 MGP_C3HHeJ_G0026257.1 mouse_genomes_project 2 134297752 134299024 - Slc23a2 protein_coding processed_transcript MGP_C3HHeJ_T0057492.1 MGP_C3HHeJ_G0026257.1 mouse_genomes_project 2 134303046 134309373 - Slc23a2 protein_coding processed_transcript MGP_C3HHeJ_T0057493.1 MGP_C3HHeJ_G0026257.1 mouse_genomes_project 2 134317241 134391396 - Slc23a2 protein_coding processed_transcript MGP_C3HHeJ_T0057494.1 MGP_C3HHeJ_G0026257.1 mouse_genomes_project 2 134318013 134320293 - Slc23a2 protein_coding processed_transcript MGP_C3HHeJ_T0057495.1 MGP_C3HHeJ_G0026257.1 mouse_genomes_project 2 134331392 134338008 - Slc23a2 protein_coding processed_transcript MGP_C3HHeJ_T0057496.1 MGP_C3HHeJ_G0026257.1 mouse_genomes_project 2 134337602 134354840 - MGP_C3HHeJ_P0057496 Slc23a2 protein_coding protein_coding MGP_C3HHeJ_T0013596.1 MGP_C3HHeJ_G0011700.1 mouse_genomes_project 2 123928479 123928830 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099227.1 MGP_C3HHeJ_G0037421.1 mouse_genomes_project 2 166453670 166453828 - Gm24478 snRNA snRNA MGP_C3HHeJ_T0056337.1 MGP_C3HHeJ_G0025997.1 mouse_genomes_project 2 113234801 113235740 - MGP_C3HHeJ_P0056337 protein_coding protein_coding MGP_C3HHeJ_T0010343.1 MGP_C3HHeJ_G0008476.1 mouse_genomes_project 2 91767450 91767533 - Gm22071 miRNA miRNA MGP_C3HHeJ_T0003984.1 MGP_C3HHeJ_G0003533.1 mouse_genomes_project 2 114764538 114767866 - Gm13964 antisense antisense MGP_C3HHeJ_T0099231.1 MGP_C3HHeJ_G0037425.1 mouse_genomes_project 2 185275353 185275460 + Gm22502 snRNA snRNA MGP_C3HHeJ_T0099213.1 MGP_C3HHeJ_G0037407.1 mouse_genomes_project 2 128658153 128658302 - Gm23753 snRNA snRNA MGP_C3HHeJ_T0052931.1 MGP_C3HHeJ_G0025198.1 mouse_genomes_project 2 23365083 23369906 + MGP_C3HHeJ_P0052931 Lcn6 protein_coding protein_coding MGP_C3HHeJ_T0052932.1 MGP_C3HHeJ_G0025198.1 mouse_genomes_project 2 23367563 23369903 + MGP_C3HHeJ_P0052932 Lcn6 protein_coding protein_coding MGP_C3HHeJ_T0052933.1 MGP_C3HHeJ_G0025198.1 mouse_genomes_project 2 23368258 23369899 + MGP_C3HHeJ_P0052933 Lcn6 protein_coding protein_coding MGP_C3HHeJ_T0052934.1 MGP_C3HHeJ_G0025198.1 mouse_genomes_project 2 23368410 23369899 + Lcn6 protein_coding processed_transcript MGP_C3HHeJ_T0017570.1 MGP_C3HHeJ_G0015194.1 mouse_genomes_project 2 75348287 75354260 + Gm13657 processed_transcript processed_transcript MGP_C3HHeJ_T0055540.1 MGP_C3HHeJ_G0025777.1 mouse_genomes_project 2 88517982 88518912 - MGP_C3HHeJ_P0055540 Olfr1180 protein_coding protein_coding MGP_C3HHeJ_T0054487.1 MGP_C3HHeJ_G0025470.1 mouse_genomes_project 2 51950758 52007843 - MGP_C3HHeJ_P0054487 Prpf40a protein_coding protein_coding MGP_C3HHeJ_T0054488.1 MGP_C3HHeJ_G0025470.1 mouse_genomes_project 2 51955280 51961426 - Prpf40a protein_coding processed_transcript MGP_C3HHeJ_T0054489.1 MGP_C3HHeJ_G0025470.1 mouse_genomes_project 2 51969208 52007902 - MGP_C3HHeJ_P0054489 Prpf40a protein_coding protein_coding MGP_C3HHeJ_T0054490.1 MGP_C3HHeJ_G0025470.1 mouse_genomes_project 2 51988296 52007822 - Prpf40a protein_coding processed_transcript MGP_C3HHeJ_T0054491.1 MGP_C3HHeJ_G0025470.1 mouse_genomes_project 2 51992069 52007843 - Prpf40a protein_coding processed_transcript MGP_C3HHeJ_T0052410.1 MGP_C3HHeJ_G0025105.1 mouse_genomes_project 2 15490287 15494184 - Skida1 protein_coding processed_transcript MGP_C3HHeJ_T0052411.1 MGP_C3HHeJ_G0025105.1 mouse_genomes_project 2 15493694 15498663 - MGP_C3HHeJ_P0052411 Skida1 protein_coding protein_coding MGP_C3HHeJ_T0052412.1 MGP_C3HHeJ_G0025105.1 mouse_genomes_project 2 15494864 15498061 - MGP_C3HHeJ_P0052412 Skida1 protein_coding protein_coding MGP_C3HHeJ_T0052413.1 MGP_C3HHeJ_G0025105.1 mouse_genomes_project 2 15497327 15498396 - MGP_C3HHeJ_P0052413 Skida1 protein_coding protein_coding MGP_C3HHeJ_T0052414.1 MGP_C3HHeJ_G0025105.1 mouse_genomes_project 2 15497755 15498643 - MGP_C3HHeJ_P0052414 Skida1 protein_coding protein_coding MGP_C3HHeJ_T0017559.1 MGP_C3HHeJ_G0015185.1 mouse_genomes_project 2 58295453 58299634 - 5330411J11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017560.1 MGP_C3HHeJ_G0015185.1 mouse_genomes_project 2 58296744 58301053 - 5330411J11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0056189.1 MGP_C3HHeJ_G0025942.1 mouse_genomes_project 2 105497090 105518258 - MGP_C3HHeJ_P0056189 Depdc7 protein_coding protein_coding MGP_C3HHeJ_T0056190.1 MGP_C3HHeJ_G0025942.1 mouse_genomes_project 2 105497915 105498510 - Depdc7 protein_coding retained_intron MGP_C3HHeJ_T0056973.1 MGP_C3HHeJ_G0026136.1 mouse_genomes_project 2 124473652 124477404 + MGP_C3HHeJ_P0056973 AA467197 protein_coding protein_coding MGP_C3HHeJ_T0056974.1 MGP_C3HHeJ_G0026136.1 mouse_genomes_project 2 124474517 124477868 + MGP_C3HHeJ_P0056974 AA467197 protein_coding protein_coding MGP_C3HHeJ_T0056975.1 MGP_C3HHeJ_G0026136.1 mouse_genomes_project 2 124474582 124477618 + AA467197 protein_coding processed_transcript MGP_C3HHeJ_T0056976.1 MGP_C3HHeJ_G0026136.1 mouse_genomes_project 2 124474582 124477760 + MGP_C3HHeJ_P0056976 AA467197 protein_coding protein_coding MGP_C3HHeJ_T0059275.1 MGP_C3HHeJ_G0026687.1 mouse_genomes_project 2 178795718 178798752 - MGP_C3HHeJ_P0059275 Atp5e protein_coding protein_coding MGP_C3HHeJ_T0059276.1 MGP_C3HHeJ_G0026687.1 mouse_genomes_project 2 178795721 178798696 - Atp5e protein_coding retained_intron MGP_C3HHeJ_T0059277.1 MGP_C3HHeJ_G0026687.1 mouse_genomes_project 2 178797162 178798736 - Atp5e protein_coding retained_intron MGP_C3HHeJ_T0055241.1 MGP_C3HHeJ_G0025614.1 mouse_genomes_project 2 80017464 80020349 + MGP_C3HHeJ_P0055241 Prdx6b protein_coding protein_coding MGP_C3HHeJ_T0055519.1 MGP_C3HHeJ_G0025757.1 mouse_genomes_project 2 87934458 87935760 + MGP_C3HHeJ_P0055519 Olfr1148 protein_coding protein_coding MGP_C3HHeJ_T0017588.1 MGP_C3HHeJ_G0015206.1 mouse_genomes_project 2 92837717 92861117 + D930015M05Rik processed_transcript processed_transcript MGP_C3HHeJ_T0011400.1 MGP_C3HHeJ_G0009533.1 mouse_genomes_project 2 43628880 43629011 + Gm27761 misc_RNA misc_RNA MGP_C3HHeJ_T0057985.1 MGP_C3HHeJ_G0026393.1 mouse_genomes_project 2 155768378 155769314 + MGP_C3HHeJ_P0057985 Mcts2 protein_coding protein_coding MGP_C3HHeJ_T0052944.1 MGP_C3HHeJ_G0025206.1 mouse_genomes_project 2 23509435 23511820 + MGP_C3HHeJ_P0052944 Lcn9 protein_coding protein_coding MGP_C3HHeJ_T0056039.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102384176 102479290 - MGP_C3HHeJ_P0056039 Prr5l protein_coding protein_coding MGP_C3HHeJ_T0056040.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102384176 102523174 - MGP_C3HHeJ_P0056040 Prr5l protein_coding protein_coding MGP_C3HHeJ_T0056041.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102386131 102479291 - MGP_C3HHeJ_P0056041 Prr5l protein_coding protein_coding MGP_C3HHeJ_T0056042.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102387139 102479233 - MGP_C3HHeJ_P0056042 Prr5l protein_coding protein_coding MGP_C3HHeJ_T0056043.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102414836 102523174 - MGP_C3HHeJ_P0056043 Prr5l protein_coding protein_coding MGP_C3HHeJ_T0056044.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102434127 102568634 - MGP_C3HHeJ_P0056044 Prr5l protein_coding protein_coding MGP_C3HHeJ_T0056045.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102447732 102479637 - MGP_C3HHeJ_P0056045 Prr5l protein_coding protein_coding MGP_C3HHeJ_T0056046.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102447776 102496634 - MGP_C3HHeJ_P0056046 Prr5l protein_coding protein_coding MGP_C3HHeJ_T0056047.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102447887 102479316 - Prr5l protein_coding processed_transcript MGP_C3HHeJ_T0056048.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102515640 102568647 - Prr5l protein_coding processed_transcript MGP_C3HHeJ_T0058598.1 MGP_C3HHeJ_G0026513.1 mouse_genomes_project 2 162003542 162042545 + MGP_C3HHeJ_P0058598 Arhgap40 protein_coding protein_coding MGP_C3HHeJ_T0058599.1 MGP_C3HHeJ_G0026513.1 mouse_genomes_project 2 162003542 162042690 + MGP_C3HHeJ_P0058599 Arhgap40 protein_coding protein_coding MGP_C3HHeJ_T0058600.1 MGP_C3HHeJ_G0026513.1 mouse_genomes_project 2 162033537 162042690 + Arhgap40 protein_coding retained_intron MGP_C3HHeJ_T0058832.1 MGP_C3HHeJ_G0026587.1 mouse_genomes_project 2 168483886 168499368 - MGP_C3HHeJ_P0058832 Wfdc3 protein_coding protein_coding MGP_C3HHeJ_T0058833.1 MGP_C3HHeJ_G0026587.1 mouse_genomes_project 2 168483886 168496750 - MGP_C3HHeJ_P0058833 Wfdc3 protein_coding protein_coding MGP_C3HHeJ_T0058834.1 MGP_C3HHeJ_G0026587.1 mouse_genomes_project 2 168497001 168499368 - Wfdc3 protein_coding processed_transcript MGP_C3HHeJ_T0013400.1 MGP_C3HHeJ_G0011504.1 mouse_genomes_project 2 52209951 52210930 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058489.1 MGP_C3HHeJ_G0026492.1 mouse_genomes_project 2 160462051 160471584 + MGP_C3HHeJ_P0058489 Tldc2 protein_coding protein_coding MGP_C3HHeJ_T0058490.1 MGP_C3HHeJ_G0026492.1 mouse_genomes_project 2 160463504 160471602 + MGP_C3HHeJ_P0058490 Tldc2 protein_coding protein_coding MGP_C3HHeJ_T0007218.1 MGP_C3HHeJ_G0005914.1 mouse_genomes_project 2 117425386 117426608 - 2700033N17Rik lincRNA lincRNA MGP_C3HHeJ_T0059300.1 MGP_C3HHeJ_G0026695.1 mouse_genomes_project 2 182935191 182992057 + MGP_C3HHeJ_P0059300 Cdh26 protein_coding protein_coding MGP_C3HHeJ_T0059301.1 MGP_C3HHeJ_G0026695.1 mouse_genomes_project 2 182935267 182992059 + MGP_C3HHeJ_P0059301 Cdh26 protein_coding protein_coding MGP_C3HHeJ_T0059302.1 MGP_C3HHeJ_G0026695.1 mouse_genomes_project 2 182964735 182971265 + Cdh26 protein_coding retained_intron MGP_C3HHeJ_T0052991.1 MGP_C3HHeJ_G0025215.1 mouse_genomes_project 2 23988470 23994268 - MGP_C3HHeJ_P0052991 C030048H21Rik protein_coding protein_coding MGP_C3HHeJ_T0004061.1 MGP_C3HHeJ_G0003590.1 mouse_genomes_project 2 158830977 158840885 - Acss2os antisense antisense MGP_C3HHeJ_T0007326.1 MGP_C3HHeJ_G0006003.1 mouse_genomes_project 2 173072352 173073713 + Gm9873 lincRNA lincRNA MGP_C3HHeJ_T0007327.1 MGP_C3HHeJ_G0006003.1 mouse_genomes_project 2 173072597 173073694 + Gm9873 lincRNA lincRNA MGP_C3HHeJ_T0057841.1 MGP_C3HHeJ_G0026347.1 mouse_genomes_project 2 153549771 153575148 - MGP_C3HHeJ_P0057841 Apmap protein_coding protein_coding MGP_C3HHeJ_T0057842.1 MGP_C3HHeJ_G0026347.1 mouse_genomes_project 2 153553812 153566835 - Apmap protein_coding processed_transcript MGP_C3HHeJ_T0057843.1 MGP_C3HHeJ_G0026347.1 mouse_genomes_project 2 153561203 153575125 - Apmap protein_coding processed_transcript MGP_C3HHeJ_T0056327.1 MGP_C3HHeJ_G0025987.1 mouse_genomes_project 2 112789447 112790386 - MGP_C3HHeJ_P0056327 protein_coding protein_coding MGP_C3HHeJ_T0058815.1 MGP_C3HHeJ_G0026575.1 mouse_genomes_project 2 168298742 168302232 - MGP_C3HHeJ_P0058815 Spint3 protein_coding protein_coding MGP_C3HHeJ_T0052757.1 MGP_C3HHeJ_G0025167.1 mouse_genomes_project 2 22912057 22919316 + MGP_C3HHeJ_P0052757 Tprn protein_coding protein_coding MGP_C3HHeJ_T0052758.1 MGP_C3HHeJ_G0025167.1 mouse_genomes_project 2 22913680 22918987 + Tprn protein_coding processed_transcript MGP_C3HHeJ_T0052759.1 MGP_C3HHeJ_G0025167.1 mouse_genomes_project 2 22916994 22918602 + Tprn protein_coding processed_transcript MGP_C3HHeJ_T0052760.1 MGP_C3HHeJ_G0025167.1 mouse_genomes_project 2 22918366 22918946 + Tprn protein_coding processed_transcript MGP_C3HHeJ_T0004034.1 MGP_C3HHeJ_G0003568.1 mouse_genomes_project 2 143828719 143884790 - Macrod2os1 antisense antisense MGP_C3HHeJ_T0056215.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106465682 106497601 + MGP_C3HHeJ_P0056215 Pax6 protein_coding protein_coding MGP_C3HHeJ_T0056216.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106465702 106496701 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056217.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106465717 106484125 + MGP_C3HHeJ_P0056217 Pax6 protein_coding protein_coding MGP_C3HHeJ_T0056218.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106469370 106497481 + MGP_C3HHeJ_P0056218 Pax6 protein_coding protein_coding MGP_C3HHeJ_T0056219.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106471397 106473312 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056220.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106472005 106496594 + MGP_C3HHeJ_P0056220 Pax6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0056221.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106472544 106473423 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056222.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106472627 106473259 + Pax6 protein_coding retained_intron MGP_C3HHeJ_T0056223.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106472627 106497481 + MGP_C3HHeJ_P0056223 Pax6 protein_coding protein_coding MGP_C3HHeJ_T0056224.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106472963 106497310 + MGP_C3HHeJ_P0056224 Pax6 protein_coding protein_coding MGP_C3HHeJ_T0056225.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106473579 106497598 + MGP_C3HHeJ_P0056225 Pax6 protein_coding protein_coding MGP_C3HHeJ_T0056226.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106475729 106486052 + MGP_C3HHeJ_P0056226 Pax6 protein_coding protein_coding MGP_C3HHeJ_T0056227.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106477205 106492498 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056228.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106479051 106485239 + Pax6 protein_coding retained_intron MGP_C3HHeJ_T0056229.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106479802 106492509 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056230.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106479847 106492541 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056231.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106479874 106496592 + Pax6 protein_coding retained_intron MGP_C3HHeJ_T0056232.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106479876 106492007 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056233.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106479886 106492519 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056234.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106479976 106491978 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056235.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106484008 106485200 + Pax6 protein_coding retained_intron MGP_C3HHeJ_T0056236.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106485578 106497601 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056237.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106492758 106493401 + Pax6 protein_coding retained_intron MGP_C3HHeJ_T0013263.1 MGP_C3HHeJ_G0011367.1 mouse_genomes_project 2 511639 511955 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004066.1 MGP_C3HHeJ_G0003594.1 mouse_genomes_project 2 159132242 159133406 + Gm16098 antisense antisense MGP_C3HHeJ_T0004021.1 MGP_C3HHeJ_G0003561.1 mouse_genomes_project 2 134748087 134769718 + 1700026D11Rik antisense antisense MGP_C3HHeJ_T0004022.1 MGP_C3HHeJ_G0003561.1 mouse_genomes_project 2 134748169 134769759 + 1700026D11Rik antisense antisense MGP_C3HHeJ_T0004023.1 MGP_C3HHeJ_G0003561.1 mouse_genomes_project 2 134748169 134771325 + 1700026D11Rik antisense antisense MGP_C3HHeJ_T0004024.1 MGP_C3HHeJ_G0003561.1 mouse_genomes_project 2 134748181 134781427 + 1700026D11Rik antisense antisense MGP_C3HHeJ_T0004025.1 MGP_C3HHeJ_G0003561.1 mouse_genomes_project 2 134748197 134781320 + 1700026D11Rik antisense antisense MGP_C3HHeJ_T0004026.1 MGP_C3HHeJ_G0003561.1 mouse_genomes_project 2 134748197 134769719 + 1700026D11Rik antisense antisense MGP_C3HHeJ_T0013734.1 MGP_C3HHeJ_G0011838.1 mouse_genomes_project 2 184531589 184531986 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055565.1 MGP_C3HHeJ_G0025801.1 mouse_genomes_project 2 89116128 89123430 - MGP_C3HHeJ_P0055565 protein_coding protein_coding MGP_C3HHeJ_T0055566.1 MGP_C3HHeJ_G0025801.1 mouse_genomes_project 2 89116627 89123400 - protein_coding processed_transcript MGP_C3HHeJ_T0055567.1 MGP_C3HHeJ_G0025801.1 mouse_genomes_project 2 89116844 89123424 - protein_coding processed_transcript MGP_C3HHeJ_T0098390.1 MGP_C3HHeJ_G0036596.1 mouse_genomes_project 2 1124556 1128200 + Gm37814 sense_intronic sense_intronic MGP_C3HHeJ_T0054748.1 MGP_C3HHeJ_G0025514.1 mouse_genomes_project 2 65268310 65311539 - MGP_C3HHeJ_P0054748 Galnt3 protein_coding protein_coding MGP_C3HHeJ_T0054749.1 MGP_C3HHeJ_G0025514.1 mouse_genomes_project 2 65269630 65280648 - Galnt3 protein_coding processed_transcript MGP_C3HHeJ_T0054750.1 MGP_C3HHeJ_G0025514.1 mouse_genomes_project 2 65276586 65279503 - Galnt3 protein_coding processed_transcript MGP_C3HHeJ_T0054751.1 MGP_C3HHeJ_G0025514.1 mouse_genomes_project 2 65283050 65289840 - Galnt3 protein_coding processed_transcript MGP_C3HHeJ_T0054699.1 MGP_C3HHeJ_G0025508.1 mouse_genomes_project 2 64018684 64022704 - Grb14 protein_coding processed_transcript MGP_C3HHeJ_T0054700.1 MGP_C3HHeJ_G0025508.1 mouse_genomes_project 2 64018684 64025000 - MGP_C3HHeJ_P0054700 Grb14 protein_coding protein_coding MGP_C3HHeJ_T0054701.1 MGP_C3HHeJ_G0025508.1 mouse_genomes_project 2 64018684 64136073 - MGP_C3HHeJ_P0054701 Grb14 protein_coding protein_coding MGP_C3HHeJ_T0054702.1 MGP_C3HHeJ_G0025508.1 mouse_genomes_project 2 64018684 64024925 - MGP_C3HHeJ_P0054702 Grb14 protein_coding protein_coding MGP_C3HHeJ_T0054703.1 MGP_C3HHeJ_G0025508.1 mouse_genomes_project 2 64036174 64041901 - Grb14 protein_coding processed_transcript MGP_C3HHeJ_T0054704.1 MGP_C3HHeJ_G0025508.1 mouse_genomes_project 2 64037640 64084049 - MGP_C3HHeJ_P0054704 Grb14 protein_coding protein_coding MGP_C3HHeJ_T0054705.1 MGP_C3HHeJ_G0025508.1 mouse_genomes_project 2 64043750 64084026 - Grb14 protein_coding processed_transcript MGP_C3HHeJ_T0054706.1 MGP_C3HHeJ_G0025508.1 mouse_genomes_project 2 64135958 64141940 - Grb14 protein_coding processed_transcript MGP_C3HHeJ_T0001020.1 MGP_C3HHeJ_G0000957.1 mouse_genomes_project 2 12336936 12338873 + TEC TEC MGP_C3HHeJ_T0055521.1 MGP_C3HHeJ_G0025759.1 mouse_genomes_project 2 87969451 87970384 + MGP_C3HHeJ_P0055521 Olfr1152 protein_coding protein_coding MGP_C3HHeJ_T0101871.1 MGP_C3HHeJ_G0039836.1 mouse_genomes_project 2 20074345 20078911 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0055450.1 MGP_C3HHeJ_G0025700.1 mouse_genomes_project 2 86343391 86344274 - MGP_C3HHeJ_P0055450 protein_coding protein_coding MGP_C3HHeJ_T0013361.1 MGP_C3HHeJ_G0011465.1 mouse_genomes_project 2 37515014 37515740 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013334.1 MGP_C3HHeJ_G0011438.1 mouse_genomes_project 2 28918116 28918496 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098400.1 MGP_C3HHeJ_G0036606.1 mouse_genomes_project 2 138046447 138047420 + Gm14209 sense_intronic sense_intronic MGP_C3HHeJ_T0007163.1 MGP_C3HHeJ_G0005870.1 mouse_genomes_project 2 77485036 77487323 + Gm13661 lincRNA lincRNA MGP_C3HHeJ_T0003918.1 MGP_C3HHeJ_G0003492.1 mouse_genomes_project 2 65625027 65732115 + Gm13629 antisense antisense MGP_C3HHeJ_T0003919.1 MGP_C3HHeJ_G0003492.1 mouse_genomes_project 2 65625043 65695495 + Gm13629 antisense antisense MGP_C3HHeJ_T0003943.1 MGP_C3HHeJ_G0003508.1 mouse_genomes_project 2 73115016 73135958 + Chn1os3 antisense antisense MGP_C3HHeJ_T0003944.1 MGP_C3HHeJ_G0003508.1 mouse_genomes_project 2 73115314 73117691 + Chn1os3 antisense antisense MGP_C3HHeJ_T0001068.1 MGP_C3HHeJ_G0001004.1 mouse_genomes_project 2 159403458 159405131 - TEC TEC MGP_C3HHeJ_T0056310.1 MGP_C3HHeJ_G0025971.1 mouse_genomes_project 2 112111128 112169594 - MGP_C3HHeJ_P0056310 4930430A15Rik protein_coding protein_coding MGP_C3HHeJ_T0056311.1 MGP_C3HHeJ_G0025971.1 mouse_genomes_project 2 112153742 112197489 - MGP_C3HHeJ_P0056311 4930430A15Rik protein_coding protein_coding MGP_C3HHeJ_T0013680.1 MGP_C3HHeJ_G0011784.1 mouse_genomes_project 2 158734178 158737312 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056247.1 MGP_C3HHeJ_G0025954.1 mouse_genomes_project 2 107559874 107740114 + MGP_C3HHeJ_P0056247 Mpped2 protein_coding protein_coding MGP_C3HHeJ_T0056248.1 MGP_C3HHeJ_G0025954.1 mouse_genomes_project 2 107561824 107612337 + MGP_C3HHeJ_P0056248 Mpped2 protein_coding protein_coding MGP_C3HHeJ_T0056249.1 MGP_C3HHeJ_G0025954.1 mouse_genomes_project 2 107562213 107738966 + MGP_C3HHeJ_P0056249 Mpped2 protein_coding protein_coding MGP_C3HHeJ_T0056250.1 MGP_C3HHeJ_G0025954.1 mouse_genomes_project 2 107562235 107653416 + Mpped2 protein_coding processed_transcript MGP_C3HHeJ_T0056251.1 MGP_C3HHeJ_G0025954.1 mouse_genomes_project 2 107562461 107738795 + MGP_C3HHeJ_P0056251 Mpped2 protein_coding protein_coding MGP_C3HHeJ_T0056252.1 MGP_C3HHeJ_G0025954.1 mouse_genomes_project 2 107598024 107653561 + Mpped2 protein_coding processed_transcript MGP_C3HHeJ_T0056335.1 MGP_C3HHeJ_G0025995.1 mouse_genomes_project 2 113189682 113190645 - MGP_C3HHeJ_P0056335 Olfr1309 protein_coding protein_coding MGP_C3HHeJ_T0100467.1 MGP_C3HHeJ_G0038661.1 mouse_genomes_project 2 91966065 91966176 + Snord67 snoRNA snoRNA MGP_C3HHeJ_T0056389.1 MGP_C3HHeJ_G0026018.1 mouse_genomes_project 2 115105629 115120897 - MGP_C3HHeJ_P0056389 Arhgap11a protein_coding protein_coding MGP_C3HHeJ_T0056390.1 MGP_C3HHeJ_G0026018.1 mouse_genomes_project 2 115105917 115121105 - MGP_C3HHeJ_P0056390 Arhgap11a protein_coding protein_coding MGP_C3HHeJ_T0057397.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133259572 133263018 - Adam33 protein_coding retained_intron MGP_C3HHeJ_T0057398.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133259798 133272791 - MGP_C3HHeJ_P0057398 Adam33 protein_coding protein_coding MGP_C3HHeJ_T0057399.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133259806 133272546 - Adam33 protein_coding retained_intron MGP_C3HHeJ_T0057400.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133259844 133265349 - MGP_C3HHeJ_P0057400 Adam33 protein_coding protein_coding MGP_C3HHeJ_T0057401.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133259856 133272522 - MGP_C3HHeJ_P0057401 Adam33 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057402.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133260090 133272791 - MGP_C3HHeJ_P0057402 Adam33 protein_coding protein_coding MGP_C3HHeJ_T0057403.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133260091 133265463 - Adam33 protein_coding retained_intron MGP_C3HHeJ_T0057404.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133262023 133263508 - MGP_C3HHeJ_P0057404 Adam33 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057405.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133262071 133263498 - Adam33 protein_coding processed_transcript MGP_C3HHeJ_T0057406.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133262202 133263041 - Adam33 protein_coding processed_transcript MGP_C3HHeJ_T0057407.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133262503 133263511 - Adam33 protein_coding retained_intron MGP_C3HHeJ_T0057408.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133266515 133272490 - MGP_C3HHeJ_P0057408 Adam33 protein_coding protein_coding MGP_C3HHeJ_T0057409.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133271034 133272520 - Adam33 protein_coding retained_intron MGP_C3HHeJ_T0098106.1 MGP_C3HHeJ_G0036318.1 mouse_genomes_project 2 105037594 105037707 + Gm25554 rRNA rRNA MGP_C3HHeJ_T0004054.1 MGP_C3HHeJ_G0003583.1 mouse_genomes_project 2 154995099 154998460 - Gm14154 antisense antisense MGP_C3HHeJ_T0058164.1 MGP_C3HHeJ_G0026442.1 mouse_genomes_project 2 158002518 158003294 - Gm14214 protein_coding translated_processed_pseudogene MGP_C3HHeJ_T0058165.1 MGP_C3HHeJ_G0026442.1 mouse_genomes_project 2 158002518 158003196 - MGP_C3HHeJ_P0058165 Gm14214 protein_coding protein_coding MGP_C3HHeJ_T0057033.1 MGP_C3HHeJ_G0026150.1 mouse_genomes_project 2 127599489 127691890 - MGP_C3HHeJ_P0057033 Shc4 protein_coding protein_coding MGP_C3HHeJ_T0057034.1 MGP_C3HHeJ_G0026150.1 mouse_genomes_project 2 127601624 127641239 - MGP_C3HHeJ_P0057034 Shc4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0057036.1 MGP_C3HHeJ_G0026150.1 mouse_genomes_project 2 127660389 127692651 - Shc4 protein_coding retained_intron MGP_C3HHeJ_T0004072.1 MGP_C3HHeJ_G0003600.1 mouse_genomes_project 2 162105173 162106084 - Gm14205 antisense antisense MGP_C3HHeJ_T0055140.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76307995 76587676 - MGP_C3HHeJ_P0055140 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055141.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76307995 76587676 - MGP_C3HHeJ_P0055141 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055142.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76307999 76587768 - MGP_C3HHeJ_P0055142 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055143.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76309046 76585403 - MGP_C3HHeJ_P0055143 Ttn protein_coding unknown_likely_coding MGP_C3HHeJ_T0055144.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76309046 76585403 - MGP_C3HHeJ_P0055144 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055145.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76418577 76542065 - MGP_C3HHeJ_P0055145 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055146.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76419085 76496729 - MGP_C3HHeJ_P0055146 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055147.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76419119 76474485 - MGP_C3HHeJ_P0055147 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055148.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76419120 76474485 - MGP_C3HHeJ_P0055148 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055149.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76419120 76474485 - MGP_C3HHeJ_P0055149 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055150.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76419120 76474485 - MGP_C3HHeJ_P0055150 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055151.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76419138 76474485 - MGP_C3HHeJ_P0055151 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055152.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76425512 76430924 - MGP_C3HHeJ_P0055152 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055153.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76426911 76446667 - MGP_C3HHeJ_P0055153 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055154.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76435754 76436788 - MGP_C3HHeJ_P0055154 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055155.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76436529 76438621 - MGP_C3HHeJ_P0055155 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055156.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76441478 76442328 - MGP_C3HHeJ_P0055156 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055157.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76441478 76444410 - MGP_C3HHeJ_P0055157 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055158.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76449746 76453274 - MGP_C3HHeJ_P0055158 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055159.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76455374 76477416 - MGP_C3HHeJ_P0055159 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055160.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76495554 76496311 - Ttn protein_coding processed_transcript MGP_C3HHeJ_T0055161.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76520483 76587676 - MGP_C3HHeJ_P0055161 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055162.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76545748 76548349 - Ttn protein_coding retained_intron MGP_C3HHeJ_T0055163.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76568038 76587768 - Ttn protein_coding retained_intron MGP_C3HHeJ_T0055164.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76568844 76587768 - MGP_C3HHeJ_P0055164 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055165.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76576805 76587768 - Ttn protein_coding retained_intron MGP_C3HHeJ_T0057968.1 MGP_C3HHeJ_G0026383.1 mouse_genomes_project 2 155591837 155595030 + MGP_C3HHeJ_P0057968 Defb28 protein_coding protein_coding MGP_C3HHeJ_T0058235.1 MGP_C3HHeJ_G0026455.1 mouse_genomes_project 2 158847199 158880287 - MGP_C3HHeJ_P0058235 Gss protein_coding protein_coding MGP_C3HHeJ_T0058236.1 MGP_C3HHeJ_G0026455.1 mouse_genomes_project 2 158847207 158880191 - MGP_C3HHeJ_P0058236 Gss protein_coding protein_coding MGP_C3HHeJ_T0058237.1 MGP_C3HHeJ_G0026455.1 mouse_genomes_project 2 158847507 158858690 - MGP_C3HHeJ_P0058237 Gss protein_coding protein_coding MGP_C3HHeJ_T0058238.1 MGP_C3HHeJ_G0026455.1 mouse_genomes_project 2 158848229 158860075 - Gss protein_coding retained_intron MGP_C3HHeJ_T0058241.1 MGP_C3HHeJ_G0026455.1 mouse_genomes_project 2 158858650 158868855 - MGP_C3HHeJ_P0058241 Gss protein_coding protein_coding MGP_C3HHeJ_T0058242.1 MGP_C3HHeJ_G0026455.1 mouse_genomes_project 2 158862480 158880204 - Gss protein_coding processed_transcript MGP_C3HHeJ_T0058243.1 MGP_C3HHeJ_G0026455.1 mouse_genomes_project 2 158863216 158873773 - Gss protein_coding retained_intron MGP_C3HHeJ_T0058244.1 MGP_C3HHeJ_G0026455.1 mouse_genomes_project 2 158863287 158880044 - MGP_C3HHeJ_P0058244 Gss protein_coding protein_coding MGP_C3HHeJ_T0058245.1 MGP_C3HHeJ_G0026455.1 mouse_genomes_project 2 158863999 158868847 - Gss protein_coding processed_transcript MGP_C3HHeJ_T0013600.1 MGP_C3HHeJ_G0011704.1 mouse_genomes_project 2 129682434 129691878 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054971.1 MGP_C3HHeJ_G0025559.1 mouse_genomes_project 2 71323432 71354491 + MGP_C3HHeJ_P0054971 Pdk1 protein_coding protein_coding MGP_C3HHeJ_T0054972.1 MGP_C3HHeJ_G0025559.1 mouse_genomes_project 2 71323528 71334579 + Pdk1 protein_coding processed_transcript MGP_C3HHeJ_T0054973.1 MGP_C3HHeJ_G0025559.1 mouse_genomes_project 2 71323534 71336959 + Pdk1 protein_coding processed_transcript MGP_C3HHeJ_T0054974.1 MGP_C3HHeJ_G0025559.1 mouse_genomes_project 2 71323554 71352619 + Pdk1 protein_coding processed_transcript MGP_C3HHeJ_T0054975.1 MGP_C3HHeJ_G0025559.1 mouse_genomes_project 2 71323759 71334831 + Pdk1 protein_coding processed_transcript MGP_C3HHeJ_T0054976.1 MGP_C3HHeJ_G0025559.1 mouse_genomes_project 2 71323951 71339599 + Pdk1 protein_coding processed_transcript MGP_C3HHeJ_T0054977.1 MGP_C3HHeJ_G0025559.1 mouse_genomes_project 2 71325287 71334254 + Pdk1 protein_coding processed_transcript MGP_C3HHeJ_T0054978.1 MGP_C3HHeJ_G0025559.1 mouse_genomes_project 2 71338064 71347126 + Pdk1 protein_coding processed_transcript MGP_C3HHeJ_T0013552.1 MGP_C3HHeJ_G0011656.1 mouse_genomes_project 2 105304008 105305031 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059338.1 MGP_C3HHeJ_G0026703.1 mouse_genomes_project 2 184661883 184711142 + MGP_C3HHeJ_P0059338 Osbpl2 protein_coding protein_coding MGP_C3HHeJ_T0059339.1 MGP_C3HHeJ_G0026703.1 mouse_genomes_project 2 184661912 184685627 + Osbpl2 protein_coding processed_transcript MGP_C3HHeJ_T0059340.1 MGP_C3HHeJ_G0026703.1 mouse_genomes_project 2 184661981 184707681 + Osbpl2 protein_coding retained_intron MGP_C3HHeJ_T0059341.1 MGP_C3HHeJ_G0026703.1 mouse_genomes_project 2 184697919 184699949 + Osbpl2 protein_coding retained_intron MGP_C3HHeJ_T0058022.1 MGP_C3HHeJ_G0026402.1 mouse_genomes_project 2 156103059 156115104 - MGP_C3HHeJ_P0058022 Pdrg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058023.1 MGP_C3HHeJ_G0026402.1 mouse_genomes_project 2 156103059 156115104 - MGP_C3HHeJ_P0058023 Pdrg1 protein_coding protein_coding MGP_C3HHeJ_T0058024.1 MGP_C3HHeJ_G0026402.1 mouse_genomes_project 2 156103640 156112167 - Pdrg1 protein_coding retained_intron MGP_C3HHeJ_T0058025.1 MGP_C3HHeJ_G0026402.1 mouse_genomes_project 2 156104465 156115043 - MGP_C3HHeJ_P0058025 Pdrg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058026.1 MGP_C3HHeJ_G0026402.1 mouse_genomes_project 2 156111889 156115023 - Pdrg1 protein_coding retained_intron MGP_C3HHeJ_T0058027.1 MGP_C3HHeJ_G0026402.1 mouse_genomes_project 2 156112059 156115039 - MGP_C3HHeJ_P0058027 Pdrg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058028.1 MGP_C3HHeJ_G0026402.1 mouse_genomes_project 2 156113027 156115054 - Pdrg1 protein_coding retained_intron MGP_C3HHeJ_T0058029.1 MGP_C3HHeJ_G0026402.1 mouse_genomes_project 2 156113691 156115019 - Pdrg1 protein_coding processed_transcript MGP_C3HHeJ_T0055113.1 MGP_C3HHeJ_G0025591.1 mouse_genomes_project 2 75521900 75526408 - MGP_C3HHeJ_P0055113 protein_coding protein_coding MGP_C3HHeJ_T0058580.1 MGP_C3HHeJ_G0026510.1 mouse_genomes_project 2 161844646 161855158 + MGP_C3HHeJ_P0058580 Snhg11 protein_coding protein_coding MGP_C3HHeJ_T0058581.1 MGP_C3HHeJ_G0026510.1 mouse_genomes_project 2 161844669 161846215 + Snhg11 protein_coding retained_intron MGP_C3HHeJ_T0058582.1 MGP_C3HHeJ_G0026510.1 mouse_genomes_project 2 161844706 161850598 + MGP_C3HHeJ_P0058582 Snhg11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058583.1 MGP_C3HHeJ_G0026510.1 mouse_genomes_project 2 161844723 161848071 + Snhg11 protein_coding retained_intron MGP_C3HHeJ_T0058584.1 MGP_C3HHeJ_G0026510.1 mouse_genomes_project 2 161844733 161850071 + MGP_C3HHeJ_P0058584 Snhg11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013516.1 MGP_C3HHeJ_G0011620.1 mouse_genomes_project 2 91892036 91892341 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013531.1 MGP_C3HHeJ_G0011635.1 mouse_genomes_project 2 98481273 98482325 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055558.1 MGP_C3HHeJ_G0025794.1 mouse_genomes_project 2 88965106 88967532 + MGP_C3HHeJ_P0055558 Olfr1205 protein_coding protein_coding MGP_C3HHeJ_T0053654.1 MGP_C3HHeJ_G0025319.1 mouse_genomes_project 2 29322563 29474828 + MGP_C3HHeJ_P0053654 Hmcn2 protein_coding protein_coding MGP_C3HHeJ_T0053655.1 MGP_C3HHeJ_G0025319.1 mouse_genomes_project 2 29322563 29474485 + MGP_C3HHeJ_P0053655 Hmcn2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0053656.1 MGP_C3HHeJ_G0025319.1 mouse_genomes_project 2 29411509 29417033 + MGP_C3HHeJ_P0053656 Hmcn2 protein_coding protein_coding MGP_C3HHeJ_T0053657.1 MGP_C3HHeJ_G0025319.1 mouse_genomes_project 2 29451175 29474813 + Hmcn2 protein_coding retained_intron MGP_C3HHeJ_T0053658.1 MGP_C3HHeJ_G0025319.1 mouse_genomes_project 2 29459847 29474827 + Hmcn2 protein_coding processed_transcript MGP_C3HHeJ_T0053659.1 MGP_C3HHeJ_G0025319.1 mouse_genomes_project 2 29468804 29472087 + Hmcn2 protein_coding retained_intron MGP_C3HHeJ_T0052976.1 MGP_C3HHeJ_G0025211.1 mouse_genomes_project 2 23764996 23812097 - MGP_C3HHeJ_P0052976 Nacc2 protein_coding protein_coding MGP_C3HHeJ_T0052977.1 MGP_C3HHeJ_G0025211.1 mouse_genomes_project 2 23764996 23852625 - MGP_C3HHeJ_P0052977 Nacc2 protein_coding protein_coding MGP_C3HHeJ_T0052978.1 MGP_C3HHeJ_G0025211.1 mouse_genomes_project 2 23770543 23771970 - Nacc2 protein_coding processed_transcript MGP_C3HHeJ_T0052979.1 MGP_C3HHeJ_G0025211.1 mouse_genomes_project 2 23773849 23811739 - Nacc2 protein_coding processed_transcript MGP_C3HHeJ_T0052980.1 MGP_C3HHeJ_G0025211.1 mouse_genomes_project 2 23773971 23810295 - Nacc2 protein_coding processed_transcript MGP_C3HHeJ_T0052981.1 MGP_C3HHeJ_G0025211.1 mouse_genomes_project 2 23809726 23853027 - Nacc2 protein_coding processed_transcript MGP_C3HHeJ_T0052982.1 MGP_C3HHeJ_G0025211.1 mouse_genomes_project 2 23810005 23852590 - MGP_C3HHeJ_P0052982 Nacc2 protein_coding protein_coding MGP_C3HHeJ_T0052983.1 MGP_C3HHeJ_G0025211.1 mouse_genomes_project 2 23810247 23852595 - Nacc2 protein_coding processed_transcript MGP_C3HHeJ_T0003895.1 MGP_C3HHeJ_G0003475.1 mouse_genomes_project 2 37155824 37171464 + Nr6a1os antisense antisense MGP_C3HHeJ_T0003896.1 MGP_C3HHeJ_G0003475.1 mouse_genomes_project 2 37155908 37186060 + Nr6a1os antisense antisense MGP_C3HHeJ_T0056326.1 MGP_C3HHeJ_G0025986.1 mouse_genomes_project 2 112765282 112766221 - MGP_C3HHeJ_P0056326 Olfr1297 protein_coding protein_coding MGP_C3HHeJ_T0056243.1 MGP_C3HHeJ_G0025953.1 mouse_genomes_project 2 106759697 106813609 - Dnajc24 protein_coding processed_transcript MGP_C3HHeJ_T0056244.1 MGP_C3HHeJ_G0025953.1 mouse_genomes_project 2 106759877 106813568 - MGP_C3HHeJ_P0056244 Dnajc24 protein_coding protein_coding MGP_C3HHeJ_T0056245.1 MGP_C3HHeJ_G0025953.1 mouse_genomes_project 2 106759925 106813548 - Dnajc24 protein_coding processed_transcript MGP_C3HHeJ_T0056246.1 MGP_C3HHeJ_G0025953.1 mouse_genomes_project 2 106763353 106812537 - Dnajc24 protein_coding processed_transcript MGP_C3HHeJ_T0100504.1 MGP_C3HHeJ_G0038698.1 mouse_genomes_project 2 161826810 161826923 - Gm26003 snoRNA snoRNA MGP_C3HHeJ_T0059571.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186196372 186207103 - MGP_C3HHeJ_P0059571 Zfp512b protein_coding protein_coding MGP_C3HHeJ_T0059572.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186196374 186205225 - MGP_C3HHeJ_P0059572 Zfp512b protein_coding protein_coding MGP_C3HHeJ_T0059573.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186198858 186200672 - Zfp512b protein_coding retained_intron MGP_C3HHeJ_T0059574.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186199446 186200578 - MGP_C3HHeJ_P0059574 Zfp512b protein_coding protein_coding MGP_C3HHeJ_T0059575.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186199452 186200630 - MGP_C3HHeJ_P0059575 Zfp512b protein_coding protein_coding MGP_C3HHeJ_T0059576.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186200989 186201951 - Zfp512b protein_coding retained_intron MGP_C3HHeJ_T0059577.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186201385 186203045 - MGP_C3HHeJ_P0059577 Zfp512b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059578.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186202371 186203592 - Zfp512b protein_coding processed_transcript MGP_C3HHeJ_T0059579.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186204328 186207058 - Zfp512b protein_coding processed_transcript MGP_C3HHeJ_T0059580.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186204827 186207103 - MGP_C3HHeJ_P0059580 Zfp512b protein_coding protein_coding MGP_C3HHeJ_T0007059.1 MGP_C3HHeJ_G0005787.1 mouse_genomes_project 2 8624069 8626091 + Gm13291 lincRNA lincRNA MGP_C3HHeJ_T0017596.1 MGP_C3HHeJ_G0015210.1 mouse_genomes_project 2 94894786 94900318 + 2810002D19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0013405.1 MGP_C3HHeJ_G0011509.1 mouse_genomes_project 2 54166028 54167054 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053806.1 MGP_C3HHeJ_G0025339.1 mouse_genomes_project 2 30476302 30479392 - Lcn2 protein_coding processed_transcript MGP_C3HHeJ_T0053807.1 MGP_C3HHeJ_G0025339.1 mouse_genomes_project 2 30476302 30479467 - MGP_C3HHeJ_P0053807 Lcn2 protein_coding protein_coding MGP_C3HHeJ_T0053808.1 MGP_C3HHeJ_G0025339.1 mouse_genomes_project 2 30476308 30477669 - Lcn2 protein_coding retained_intron MGP_C3HHeJ_T0053809.1 MGP_C3HHeJ_G0025339.1 mouse_genomes_project 2 30476852 30477777 - Lcn2 protein_coding retained_intron MGP_C3HHeJ_T0053810.1 MGP_C3HHeJ_G0025339.1 mouse_genomes_project 2 30477114 30479922 - MGP_C3HHeJ_P0053810 Lcn2 protein_coding protein_coding MGP_C3HHeJ_T0053811.1 MGP_C3HHeJ_G0025339.1 mouse_genomes_project 2 30478225 30479429 - Lcn2 protein_coding retained_intron MGP_C3HHeJ_T0057665.1 MGP_C3HHeJ_G0026296.1 mouse_genomes_project 2 146504639 146546837 - MGP_C3HHeJ_P0057665 Bfsp1 protein_coding protein_coding MGP_C3HHeJ_T0057666.1 MGP_C3HHeJ_G0026296.1 mouse_genomes_project 2 146504639 146546607 - MGP_C3HHeJ_P0057666 Bfsp1 protein_coding protein_coding MGP_C3HHeJ_T0001000.1 MGP_C3HHeJ_G0000937.1 mouse_genomes_project 2 8787940 8790043 - TEC TEC MGP_C3HHeJ_T0013643.1 MGP_C3HHeJ_G0011747.1 mouse_genomes_project 2 146565067 146565400 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097896.1 MGP_C3HHeJ_G0036108.1 mouse_genomes_project 2 94445014 94445763 - pseudogene pseudogene MGP_C3HHeJ_T0007331.1 MGP_C3HHeJ_G0006007.1 mouse_genomes_project 2 173472132 173478400 - 4930529I22Rik lincRNA lincRNA MGP_C3HHeJ_T0053979.1 MGP_C3HHeJ_G0025368.1 mouse_genomes_project 2 31593250 31605007 - MGP_C3HHeJ_P0053979 Zbtb43 protein_coding protein_coding MGP_C3HHeJ_T0053980.1 MGP_C3HHeJ_G0025368.1 mouse_genomes_project 2 31593250 31612208 - MGP_C3HHeJ_P0053980 Zbtb43 protein_coding protein_coding MGP_C3HHeJ_T0053981.1 MGP_C3HHeJ_G0025368.1 mouse_genomes_project 2 31596485 31612181 - MGP_C3HHeJ_P0053981 Zbtb43 protein_coding protein_coding MGP_C3HHeJ_T0053982.1 MGP_C3HHeJ_G0025368.1 mouse_genomes_project 2 31597582 31607736 - MGP_C3HHeJ_P0053982 Zbtb43 protein_coding protein_coding MGP_C3HHeJ_T0053983.1 MGP_C3HHeJ_G0025368.1 mouse_genomes_project 2 31597851 31612235 - MGP_C3HHeJ_P0053983 Zbtb43 protein_coding protein_coding MGP_C3HHeJ_T0100462.1 MGP_C3HHeJ_G0038656.1 mouse_genomes_project 2 66647489 66647621 + Gm23328 snoRNA snoRNA MGP_C3HHeJ_T0010353.1 MGP_C3HHeJ_G0008486.1 mouse_genomes_project 2 94746693 94746793 - Mir670 miRNA miRNA MGP_C3HHeJ_T0054195.1 MGP_C3HHeJ_G0025422.1 mouse_genomes_project 2 35482720 35487973 + MGP_C3HHeJ_P0054195 protein_coding protein_coding MGP_C3HHeJ_T0055959.1 MGP_C3HHeJ_G0025897.1 mouse_genomes_project 2 94038850 94042643 + MGP_C3HHeJ_P0055959 Gm10803 protein_coding protein_coding MGP_C3HHeJ_T0055114.1 MGP_C3HHeJ_G0025592.1 mouse_genomes_project 2 75564829 75567294 - MGP_C3HHeJ_P0055114 Ttc30a2 protein_coding protein_coding MGP_C3HHeJ_T0017688.1 MGP_C3HHeJ_G0015249.1 mouse_genomes_project 2 163497651 163531644 + 4933416E03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0013424.1 MGP_C3HHeJ_G0011528.1 mouse_genomes_project 2 59552490 59553632 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058777.1 MGP_C3HHeJ_G0026565.1 mouse_genomes_project 2 168076650 168079085 - MGP_C3HHeJ_P0058777 Slpi protein_coding protein_coding MGP_C3HHeJ_T0058778.1 MGP_C3HHeJ_G0026565.1 mouse_genomes_project 2 168076742 168078645 - MGP_C3HHeJ_P0058778 Slpi protein_coding protein_coding MGP_C3HHeJ_T0058779.1 MGP_C3HHeJ_G0026565.1 mouse_genomes_project 2 168078172 168112606 - MGP_C3HHeJ_P0058779 Slpi protein_coding protein_coding MGP_C3HHeJ_T0052786.1 MGP_C3HHeJ_G0025173.1 mouse_genomes_project 2 22988484 23005797 + MGP_C3HHeJ_P0052786 Man1b1 protein_coding protein_coding MGP_C3HHeJ_T0052787.1 MGP_C3HHeJ_G0025173.1 mouse_genomes_project 2 22988875 23014831 + MGP_C3HHeJ_P0052787 Man1b1 protein_coding protein_coding MGP_C3HHeJ_T0052788.1 MGP_C3HHeJ_G0025173.1 mouse_genomes_project 2 22988908 23007065 + Man1b1 protein_coding processed_transcript MGP_C3HHeJ_T0052789.1 MGP_C3HHeJ_G0025173.1 mouse_genomes_project 2 22988919 22994316 + Man1b1 protein_coding processed_transcript MGP_C3HHeJ_T0052790.1 MGP_C3HHeJ_G0025173.1 mouse_genomes_project 2 22994259 23007779 + Man1b1 protein_coding processed_transcript MGP_C3HHeJ_T0052791.1 MGP_C3HHeJ_G0025173.1 mouse_genomes_project 2 23007513 23008217 + Man1b1 protein_coding processed_transcript MGP_C3HHeJ_T0058676.1 MGP_C3HHeJ_G0026529.1 mouse_genomes_project 2 166559127 166559782 - MGP_C3HHeJ_P0058676 Cisd3 protein_coding protein_coding MGP_C3HHeJ_T0013502.1 MGP_C3HHeJ_G0011606.1 mouse_genomes_project 2 87378776 87379008 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057812.1 MGP_C3HHeJ_G0026333.1 mouse_genomes_project 2 151638029 151641942 + MGP_C3HHeJ_P0057812 8030411F24Rik protein_coding protein_coding MGP_C3HHeJ_T0056949.1 MGP_C3HHeJ_G0026130.1 mouse_genomes_project 2 124023823 124027858 + MGP_C3HHeJ_P0056949 Duoxa2 protein_coding protein_coding MGP_C3HHeJ_T0017647.1 MGP_C3HHeJ_G0015230.1 mouse_genomes_project 2 131183293 131188184 - Gm14022 processed_transcript processed_transcript MGP_C3HHeJ_T0100448.1 MGP_C3HHeJ_G0038642.1 mouse_genomes_project 2 38674495 38674621 + Gm24467 snoRNA snoRNA MGP_C3HHeJ_T0101178.1 MGP_C3HHeJ_G0039327.1 mouse_genomes_project 2 134098905 134099145 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0059354.1 MGP_C3HHeJ_G0026706.1 mouse_genomes_project 2 184806449 184807518 + MGP_C3HHeJ_P0059354 Rps21 protein_coding protein_coding MGP_C3HHeJ_T0059355.1 MGP_C3HHeJ_G0026706.1 mouse_genomes_project 2 184806451 184807515 + Rps21 protein_coding retained_intron MGP_C3HHeJ_T0059356.1 MGP_C3HHeJ_G0026706.1 mouse_genomes_project 2 184806490 184807067 + Rps21 protein_coding retained_intron MGP_C3HHeJ_T0059357.1 MGP_C3HHeJ_G0026706.1 mouse_genomes_project 2 184806490 184807216 + Rps21 protein_coding retained_intron MGP_C3HHeJ_T0057284.1 MGP_C3HHeJ_G0026212.1 mouse_genomes_project 2 132172554 132210559 + MGP_C3HHeJ_P0057284 protein_coding protein_coding MGP_C3HHeJ_T0053547.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28367031 28402841 + MGP_C3HHeJ_P0053547 Ptpa protein_coding protein_coding MGP_C3HHeJ_T0053548.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28367123 28402842 + MGP_C3HHeJ_P0053548 Ptpa protein_coding protein_coding MGP_C3HHeJ_T0053549.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28367129 28386014 + MGP_C3HHeJ_P0053549 Ptpa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053550.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28367134 28402653 + MGP_C3HHeJ_P0053550 Ptpa protein_coding protein_coding MGP_C3HHeJ_T0053551.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28367188 28402840 + Ptpa protein_coding retained_intron MGP_C3HHeJ_T0053552.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28367294 28382390 + Ptpa protein_coding processed_transcript MGP_C3HHeJ_T0053553.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28382341 28393137 + Ptpa protein_coding retained_intron MGP_C3HHeJ_T0053554.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28393264 28401986 + MGP_C3HHeJ_P0053554 Ptpa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053555.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28396888 28402167 + MGP_C3HHeJ_P0053555 Ptpa protein_coding protein_coding MGP_C3HHeJ_T0053556.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28397770 28401842 + MGP_C3HHeJ_P0053556 Ptpa protein_coding protein_coding MGP_C3HHeJ_T0053557.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28398254 28401935 + Ptpa protein_coding processed_transcript MGP_C3HHeJ_T0053558.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28400691 28402110 + Ptpa protein_coding processed_transcript MGP_C3HHeJ_T0053559.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28400751 28401812 + Ptpa protein_coding processed_transcript MGP_C3HHeJ_T0013508.1 MGP_C3HHeJ_G0011612.1 mouse_genomes_project 2 87639267 87639991 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003816.1 MGP_C3HHeJ_G0003413.1 mouse_genomes_project 2 1583776 1585040 - Gm13179 antisense antisense MGP_C3HHeJ_T0003817.1 MGP_C3HHeJ_G0003413.1 mouse_genomes_project 2 1584080 1585040 - Gm13179 antisense antisense MGP_C3HHeJ_T0010248.1 MGP_C3HHeJ_G0008381.1 mouse_genomes_project 2 6394167 6394244 - Gm23963 miRNA miRNA MGP_C3HHeJ_T0057798.1 MGP_C3HHeJ_G0026326.1 mouse_genomes_project 2 151267634 151271357 - MGP_C3HHeJ_P0057798 Thbd protein_coding protein_coding MGP_C3HHeJ_T0003977.1 MGP_C3HHeJ_G0003528.1 mouse_genomes_project 2 106333127 106467858 - Pax6os1 antisense antisense MGP_C3HHeJ_T0003978.1 MGP_C3HHeJ_G0003528.1 mouse_genomes_project 2 106334216 106467808 - Pax6os1 antisense antisense MGP_C3HHeJ_T0013653.1 MGP_C3HHeJ_G0011757.1 mouse_genomes_project 2 149680862 149681465 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055872.1 MGP_C3HHeJ_G0025883.1 mouse_genomes_project 2 92388048 92430199 - MGP_C3HHeJ_P0055872 Creb3l1 protein_coding protein_coding MGP_C3HHeJ_T0058249.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158921865 158984227 - MGP_C3HHeJ_P0058249 Trpc4ap protein_coding protein_coding MGP_C3HHeJ_T0058250.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158921902 158984175 - MGP_C3HHeJ_P0058250 Trpc4ap protein_coding protein_coding MGP_C3HHeJ_T0058251.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158922339 158925337 - Trpc4ap protein_coding processed_transcript MGP_C3HHeJ_T0058252.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158923190 158925383 - Trpc4ap protein_coding retained_intron MGP_C3HHeJ_T0058253.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158926576 158961843 - Trpc4ap protein_coding retained_intron MGP_C3HHeJ_T0058254.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158926583 158928135 - Trpc4ap protein_coding retained_intron MGP_C3HHeJ_T0058255.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158931213 158952594 - Trpc4ap protein_coding retained_intron MGP_C3HHeJ_T0058256.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158942233 158984225 - Trpc4ap protein_coding retained_intron MGP_C3HHeJ_T0058257.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158954661 158957292 - Trpc4ap protein_coding retained_intron MGP_C3HHeJ_T0058258.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158961848 158983966 - Trpc4ap protein_coding processed_transcript MGP_C3HHeJ_T0013661.1 MGP_C3HHeJ_G0011765.1 mouse_genomes_project 2 151277096 151277331 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001033.1 MGP_C3HHeJ_G0000970.1 mouse_genomes_project 2 33671742 33672733 - TEC TEC MGP_C3HHeJ_T0054376.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47539579 47586806 - MGP_C3HHeJ_P0054376 Orc4 protein_coding protein_coding MGP_C3HHeJ_T0054377.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47541635 47546193 - Orc4 protein_coding processed_transcript MGP_C3HHeJ_T0054378.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47542071 47586761 - Orc4 protein_coding processed_transcript MGP_C3HHeJ_T0054379.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47542134 47546848 - Orc4 protein_coding processed_transcript MGP_C3HHeJ_T0054380.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47542169 47548755 - Orc4 protein_coding processed_transcript MGP_C3HHeJ_T0054381.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47547583 47586764 - Orc4 protein_coding processed_transcript MGP_C3HHeJ_T0054382.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47553384 47587569 - MGP_C3HHeJ_P0054382 Orc4 protein_coding protein_coding MGP_C3HHeJ_T0054383.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47566531 47577901 - Orc4 protein_coding processed_transcript MGP_C3HHeJ_T0054384.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47568863 47586764 - MGP_C3HHeJ_P0054384 Orc4 protein_coding protein_coding MGP_C3HHeJ_T0054385.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47570058 47571108 - Orc4 protein_coding processed_transcript MGP_C3HHeJ_T0054386.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47574011 47586762 - Orc4 protein_coding processed_transcript MGP_C3HHeJ_T0054387.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47574307 47586771 - MGP_C3HHeJ_P0054387 Orc4 protein_coding protein_coding MGP_C3HHeJ_T0054388.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47574378 47587807 - MGP_C3HHeJ_P0054388 Orc4 protein_coding protein_coding MGP_C3HHeJ_T0004111.1 MGP_C3HHeJ_G0003628.1 mouse_genomes_project 2 177566358 177568089 + Pmepa1os antisense antisense MGP_C3HHeJ_T0058884.1 MGP_C3HHeJ_G0026599.1 mouse_genomes_project 2 168644122 168648873 + Pcif1 protein_coding retained_intron MGP_C3HHeJ_T0058885.1 MGP_C3HHeJ_G0026599.1 mouse_genomes_project 2 168644183 168660146 + MGP_C3HHeJ_P0058885 Pcif1 protein_coding protein_coding MGP_C3HHeJ_T0058886.1 MGP_C3HHeJ_G0026599.1 mouse_genomes_project 2 168644870 168648784 + Pcif1 protein_coding retained_intron MGP_C3HHeJ_T0058887.1 MGP_C3HHeJ_G0026599.1 mouse_genomes_project 2 168649606 168650368 + Pcif1 protein_coding retained_intron MGP_C3HHeJ_T0007283.1 MGP_C3HHeJ_G0005966.1 mouse_genomes_project 2 159777024 159780744 - Gm14224 lincRNA lincRNA MGP_C3HHeJ_T0101388.1 MGP_C3HHeJ_G0039439.1 mouse_genomes_project 2 35556204 35560097 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101389.1 MGP_C3HHeJ_G0039439.1 mouse_genomes_project 2 35559665 35560610 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0013416.1 MGP_C3HHeJ_G0011520.1 mouse_genomes_project 2 57854637 57854966 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0051991.1 MGP_C3HHeJ_G0025034.1 mouse_genomes_project 2 73602 190248 + MGP_C3HHeJ_P0051991 Fam171a1 protein_coding protein_coding MGP_C3HHeJ_T0051992.1 MGP_C3HHeJ_G0025034.1 mouse_genomes_project 2 73731 190245 + MGP_C3HHeJ_P0051992 Fam171a1 protein_coding protein_coding MGP_C3HHeJ_T0055612.1 MGP_C3HHeJ_G0025836.1 mouse_genomes_project 2 90069415 90075120 - MGP_C3HHeJ_P0055612 Olfr1256 protein_coding protein_coding MGP_C3HHeJ_T0055613.1 MGP_C3HHeJ_G0025836.1 mouse_genomes_project 2 90069415 90070336 - MGP_C3HHeJ_P0055613 Olfr1256 protein_coding protein_coding MGP_C3HHeJ_T0013519.1 MGP_C3HHeJ_G0011623.1 mouse_genomes_project 2 92659664 92659997 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013520.1 MGP_C3HHeJ_G0011624.1 mouse_genomes_project 2 92739231 92739921 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054778.1 MGP_C3HHeJ_G0025522.1 mouse_genomes_project 2 67470786 67748071 - MGP_C3HHeJ_P0054778 Stk39 protein_coding protein_coding MGP_C3HHeJ_T0054779.1 MGP_C3HHeJ_G0025522.1 mouse_genomes_project 2 67470789 67632318 - Stk39 protein_coding retained_intron MGP_C3HHeJ_T0054780.1 MGP_C3HHeJ_G0025522.1 mouse_genomes_project 2 67472081 67483675 - Stk39 protein_coding processed_transcript MGP_C3HHeJ_T0054781.1 MGP_C3HHeJ_G0025522.1 mouse_genomes_project 2 67472081 67512509 - Stk39 protein_coding processed_transcript MGP_C3HHeJ_T0054782.1 MGP_C3HHeJ_G0025522.1 mouse_genomes_project 2 67472081 67512514 - Stk39 protein_coding processed_transcript MGP_C3HHeJ_T0054783.1 MGP_C3HHeJ_G0025522.1 mouse_genomes_project 2 67472087 67512487 - Stk39 protein_coding processed_transcript MGP_C3HHeJ_T0054784.1 MGP_C3HHeJ_G0025522.1 mouse_genomes_project 2 67524890 67747743 - Stk39 protein_coding retained_intron MGP_C3HHeJ_T0054785.1 MGP_C3HHeJ_G0025522.1 mouse_genomes_project 2 67624088 67657226 - Stk39 protein_coding processed_transcript MGP_C3HHeJ_T0057729.1 MGP_C3HHeJ_G0026312.1 mouse_genomes_project 2 147911172 148389992 + MGP_C3HHeJ_P0057729 Slc24a3 protein_coding protein_coding MGP_C3HHeJ_T0057730.1 MGP_C3HHeJ_G0026312.1 mouse_genomes_project 2 147911337 148263114 + Slc24a3 protein_coding processed_transcript MGP_C3HHeJ_T0057731.1 MGP_C3HHeJ_G0026312.1 mouse_genomes_project 2 147977998 148389992 + Slc24a3 protein_coding processed_transcript MGP_C3HHeJ_T0057732.1 MGP_C3HHeJ_G0026312.1 mouse_genomes_project 2 147978009 148388192 + MGP_C3HHeJ_P0057732 Slc24a3 protein_coding protein_coding MGP_C3HHeJ_T0057733.1 MGP_C3HHeJ_G0026312.1 mouse_genomes_project 2 148357118 148366218 + Slc24a3 protein_coding processed_transcript MGP_C3HHeJ_T0058835.1 MGP_C3HHeJ_G0026588.1 mouse_genomes_project 2 168499419 168524642 + MGP_C3HHeJ_P0058835 Dnttip1 protein_coding protein_coding MGP_C3HHeJ_T0058836.1 MGP_C3HHeJ_G0026588.1 mouse_genomes_project 2 168499450 168504889 + MGP_C3HHeJ_P0058836 Dnttip1 protein_coding protein_coding MGP_C3HHeJ_T0058837.1 MGP_C3HHeJ_G0026588.1 mouse_genomes_project 2 168499467 168516579 + MGP_C3HHeJ_P0058837 Dnttip1 protein_coding protein_coding MGP_C3HHeJ_T0058838.1 MGP_C3HHeJ_G0026588.1 mouse_genomes_project 2 168507632 168514578 + Dnttip1 protein_coding retained_intron MGP_C3HHeJ_T0052462.1 MGP_C3HHeJ_G0025112.1 mouse_genomes_project 2 16507826 16509281 + MGP_C3HHeJ_P0052462 4930426L09Rik protein_coding protein_coding MGP_C3HHeJ_T0001058.1 MGP_C3HHeJ_G0000995.1 mouse_genomes_project 2 96348945 96372689 + TEC TEC MGP_C3HHeJ_T0099201.1 MGP_C3HHeJ_G0037395.1 mouse_genomes_project 2 80741291 80741398 - Gm23452 snRNA snRNA MGP_C3HHeJ_T0007164.1 MGP_C3HHeJ_G0005871.1 mouse_genomes_project 2 77686627 77706470 + lincRNA lincRNA MGP_C3HHeJ_T0007165.1 MGP_C3HHeJ_G0005871.1 mouse_genomes_project 2 77686673 77847039 + lincRNA lincRNA MGP_C3HHeJ_T0056033.1 MGP_C3HHeJ_G0025910.1 mouse_genomes_project 2 102292388 102300185 + MGP_C3HHeJ_P0056033 Rag2 protein_coding protein_coding MGP_C3HHeJ_T0056034.1 MGP_C3HHeJ_G0025910.1 mouse_genomes_project 2 102292416 102298709 + MGP_C3HHeJ_P0056034 Rag2 protein_coding protein_coding MGP_C3HHeJ_T0056320.1 MGP_C3HHeJ_G0025980.1 mouse_genomes_project 2 112458919 112465675 - MGP_C3HHeJ_P0056320 Olfr1283 protein_coding protein_coding MGP_C3HHeJ_T0058007.1 MGP_C3HHeJ_G0026398.1 mouse_genomes_project 2 156001452 156012970 + MGP_C3HHeJ_P0058007 Mylk2 protein_coding protein_coding MGP_C3HHeJ_T0001028.1 MGP_C3HHeJ_G0000965.1 mouse_genomes_project 2 22515855 22520920 - TEC TEC MGP_C3HHeJ_T0057648.1 MGP_C3HHeJ_G0026291.1 mouse_genomes_project 2 143241181 143261708 - Flrt3 protein_coding processed_transcript MGP_C3HHeJ_T0057649.1 MGP_C3HHeJ_G0026291.1 mouse_genomes_project 2 143248465 143261727 - MGP_C3HHeJ_P0057649 Flrt3 protein_coding protein_coding MGP_C3HHeJ_T0057650.1 MGP_C3HHeJ_G0026291.1 mouse_genomes_project 2 143249584 143261658 - MGP_C3HHeJ_P0057650 Flrt3 protein_coding protein_coding MGP_C3HHeJ_T0003915.1 MGP_C3HHeJ_G0003489.1 mouse_genomes_project 2 65032058 65040280 - Gm13619 antisense antisense MGP_C3HHeJ_T0053992.1 MGP_C3HHeJ_G0025371.1 mouse_genomes_project 2 32350799 32562915 - MGP_C3HHeJ_P0053992 Pbx3 protein_coding protein_coding MGP_C3HHeJ_T0053993.1 MGP_C3HHeJ_G0025371.1 mouse_genomes_project 2 32352214 32476586 - Pbx3 protein_coding processed_transcript MGP_C3HHeJ_T0053994.1 MGP_C3HHeJ_G0025371.1 mouse_genomes_project 2 32352222 32562915 - MGP_C3HHeJ_P0053994 Pbx3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053995.1 MGP_C3HHeJ_G0025371.1 mouse_genomes_project 2 32352222 32562915 - MGP_C3HHeJ_P0053995 Pbx3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053996.1 MGP_C3HHeJ_G0025371.1 mouse_genomes_project 2 32356200 32561841 - MGP_C3HHeJ_P0053996 Pbx3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053997.1 MGP_C3HHeJ_G0025371.1 mouse_genomes_project 2 32397193 32564879 - MGP_C3HHeJ_P0053997 Pbx3 protein_coding protein_coding MGP_C3HHeJ_T0053998.1 MGP_C3HHeJ_G0025371.1 mouse_genomes_project 2 32408190 32562248 - MGP_C3HHeJ_P0053998 Pbx3 protein_coding protein_coding MGP_C3HHeJ_T0053999.1 MGP_C3HHeJ_G0025371.1 mouse_genomes_project 2 32408317 32562145 - MGP_C3HHeJ_P0053999 Pbx3 protein_coding protein_coding MGP_C3HHeJ_T0054000.1 MGP_C3HHeJ_G0025371.1 mouse_genomes_project 2 32559106 32562787 - Pbx3 protein_coding retained_intron MGP_C3HHeJ_T0011412.1 MGP_C3HHeJ_G0009545.1 mouse_genomes_project 2 105912950 105913072 - Gm27636 misc_RNA misc_RNA MGP_C3HHeJ_T0058049.1 MGP_C3HHeJ_G0026408.1 mouse_genomes_project 2 156347421 156382328 + MGP_C3HHeJ_P0058049 Pofut1 protein_coding protein_coding MGP_C3HHeJ_T0058050.1 MGP_C3HHeJ_G0026408.1 mouse_genomes_project 2 156347429 156375229 + MGP_C3HHeJ_P0058050 Pofut1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058051.1 MGP_C3HHeJ_G0026408.1 mouse_genomes_project 2 156347429 156375229 + MGP_C3HHeJ_P0058051 Pofut1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058052.1 MGP_C3HHeJ_G0026408.1 mouse_genomes_project 2 156347439 156371213 + MGP_C3HHeJ_P0058052 Pofut1 protein_coding protein_coding MGP_C3HHeJ_T0058053.1 MGP_C3HHeJ_G0026408.1 mouse_genomes_project 2 156347457 156358244 + Pofut1 protein_coding retained_intron MGP_C3HHeJ_T0058054.1 MGP_C3HHeJ_G0026408.1 mouse_genomes_project 2 156347466 156378584 + MGP_C3HHeJ_P0058054 Pofut1 protein_coding protein_coding MGP_C3HHeJ_T0058055.1 MGP_C3HHeJ_G0026408.1 mouse_genomes_project 2 156366226 156379367 + MGP_C3HHeJ_P0058055 Pofut1 protein_coding protein_coding MGP_C3HHeJ_T0058056.1 MGP_C3HHeJ_G0026408.1 mouse_genomes_project 2 156366316 156380144 + MGP_C3HHeJ_P0058056 Pofut1 protein_coding protein_coding MGP_C3HHeJ_T0007250.1 MGP_C3HHeJ_G0005938.1 mouse_genomes_project 2 135242130 135243494 + Gm14102 lincRNA lincRNA MGP_C3HHeJ_T0055663.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91176998 91197886 + MGP_C3HHeJ_P0055663 Mtch2 protein_coding protein_coding MGP_C3HHeJ_T0055664.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91177021 91196464 + MGP_C3HHeJ_P0055664 Mtch2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055665.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91177033 91178158 + Mtch2 protein_coding processed_transcript MGP_C3HHeJ_T0055666.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91177074 91197716 + MGP_C3HHeJ_P0055666 Mtch2 protein_coding protein_coding MGP_C3HHeJ_T0055667.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91177096 91182696 + Mtch2 protein_coding retained_intron MGP_C3HHeJ_T0055668.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91177116 91197716 + MGP_C3HHeJ_P0055668 Mtch2 protein_coding protein_coding MGP_C3HHeJ_T0055669.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91177130 91196467 + Mtch2 protein_coding processed_transcript MGP_C3HHeJ_T0055670.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91177142 91196346 + MGP_C3HHeJ_P0055670 Mtch2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055671.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91183266 91186823 + Mtch2 protein_coding retained_intron MGP_C3HHeJ_T0055672.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91183901 91187940 + Mtch2 protein_coding retained_intron MGP_C3HHeJ_T0055673.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91192315 91196547 + Mtch2 protein_coding retained_intron MGP_C3HHeJ_T0055674.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91194534 91196464 + Mtch2 protein_coding retained_intron MGP_C3HHeJ_T0054818.1 MGP_C3HHeJ_G0025531.1 mouse_genomes_project 2 68739507 68911891 - MGP_C3HHeJ_P0054818 Lrp2 protein_coding protein_coding MGP_C3HHeJ_T0054819.1 MGP_C3HHeJ_G0025531.1 mouse_genomes_project 2 68823857 68911855 - MGP_C3HHeJ_P0054819 Lrp2 protein_coding protein_coding MGP_C3HHeJ_T0054820.1 MGP_C3HHeJ_G0025531.1 mouse_genomes_project 2 68825276 68826799 - Lrp2 protein_coding processed_transcript MGP_C3HHeJ_T0054821.1 MGP_C3HHeJ_G0025531.1 mouse_genomes_project 2 68845911 68911855 - MGP_C3HHeJ_P0054821 Lrp2 protein_coding protein_coding MGP_C3HHeJ_T0099214.1 MGP_C3HHeJ_G0037408.1 mouse_genomes_project 2 130190734 130190871 + Gm23101 snRNA snRNA MGP_C3HHeJ_T0052262.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9003212 9004291 - Fbxo18 protein_coding processed_transcript MGP_C3HHeJ_T0052263.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9003214 9037142 - MGP_C3HHeJ_P0052263 Fbxo18 protein_coding protein_coding MGP_C3HHeJ_T0052264.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9004306 9009546 - Fbxo18 protein_coding retained_intron MGP_C3HHeJ_T0052265.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9008166 9037067 - Fbxo18 protein_coding retained_intron MGP_C3HHeJ_T0052266.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9008753 9017125 - MGP_C3HHeJ_P0052266 Fbxo18 protein_coding protein_coding MGP_C3HHeJ_T0052267.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9009771 9012083 - Fbxo18 protein_coding retained_intron MGP_C3HHeJ_T0052268.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9011992 9018042 - Fbxo18 protein_coding retained_intron MGP_C3HHeJ_T0052269.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9022500 9037110 - Fbxo18 protein_coding processed_transcript MGP_C3HHeJ_T0052270.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9023793 9037108 - Fbxo18 protein_coding processed_transcript MGP_C3HHeJ_T0052271.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9027063 9037067 - Fbxo18 protein_coding processed_transcript MGP_C3HHeJ_T0055261.1 MGP_C3HHeJ_G0025620.1 mouse_genomes_project 2 80382011 80401967 + MGP_C3HHeJ_P0055261 Nup35 protein_coding protein_coding MGP_C3HHeJ_T0007328.1 MGP_C3HHeJ_G0006004.1 mouse_genomes_project 2 173161257 173165219 + Gm14258 lincRNA lincRNA MGP_C3HHeJ_T0010333.1 MGP_C3HHeJ_G0008466.1 mouse_genomes_project 2 66921015 66921075 + Mir7224 miRNA miRNA MGP_C3HHeJ_T0001040.1 MGP_C3HHeJ_G0000977.1 mouse_genomes_project 2 36407398 36410303 - TEC TEC MGP_C3HHeJ_T0055550.1 MGP_C3HHeJ_G0025786.1 mouse_genomes_project 2 88812407 88813334 - MGP_C3HHeJ_P0055550 Olfr1195 protein_coding protein_coding MGP_C3HHeJ_T0052917.1 MGP_C3HHeJ_G0025194.1 mouse_genomes_project 2 23309835 23311774 - MGP_C3HHeJ_P0052917 Tmem141 protein_coding protein_coding MGP_C3HHeJ_T0052918.1 MGP_C3HHeJ_G0025194.1 mouse_genomes_project 2 23309835 23311754 - MGP_C3HHeJ_P0052918 Tmem141 protein_coding protein_coding MGP_C3HHeJ_T0052919.1 MGP_C3HHeJ_G0025194.1 mouse_genomes_project 2 23309872 23311732 - Tmem141 protein_coding processed_transcript MGP_C3HHeJ_T0052920.1 MGP_C3HHeJ_G0025194.1 mouse_genomes_project 2 23310095 23311549 - Tmem141 protein_coding processed_transcript MGP_C3HHeJ_T0052921.1 MGP_C3HHeJ_G0025194.1 mouse_genomes_project 2 23310815 23311740 - Tmem141 protein_coding processed_transcript MGP_C3HHeJ_T0052922.1 MGP_C3HHeJ_G0025194.1 mouse_genomes_project 2 23310815 23311737 - Tmem141 protein_coding processed_transcript MGP_C3HHeJ_T0052923.1 MGP_C3HHeJ_G0025194.1 mouse_genomes_project 2 23311262 23311676 - Tmem141 protein_coding processed_transcript MGP_C3HHeJ_T0007303.1 MGP_C3HHeJ_G0005984.1 mouse_genomes_project 2 169807548 169816480 - Platr29 lincRNA lincRNA MGP_C3HHeJ_T0013583.1 MGP_C3HHeJ_G0011687.1 mouse_genomes_project 2 116359477 116360371 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058057.1 MGP_C3HHeJ_G0026409.1 mouse_genomes_project 2 156411366 156457748 + MGP_C3HHeJ_P0058057 Kif3b protein_coding protein_coding MGP_C3HHeJ_T0013433.1 MGP_C3HHeJ_G0011537.1 mouse_genomes_project 2 64408611 64409621 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013534.1 MGP_C3HHeJ_G0011638.1 mouse_genomes_project 2 99197969 99198294 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007085.1 MGP_C3HHeJ_G0005805.1 mouse_genomes_project 2 26113804 26122654 - Gm13373 lincRNA lincRNA MGP_C3HHeJ_T0003914.1 MGP_C3HHeJ_G0003488.1 mouse_genomes_project 2 64660349 64663674 + Gm13595 antisense antisense MGP_C3HHeJ_T0056680.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121993421 122013762 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056681.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121993726 122009611 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056682.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121993727 122059861 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056683.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121993735 122014527 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056684.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121993749 122063518 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056685.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121993839 122009609 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056686.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121993863 122005777 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056687.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121994293 122064376 + MGP_C3HHeJ_P0056687 Ganc protein_coding protein_coding MGP_C3HHeJ_T0056688.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121994299 122004480 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056689.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121994505 122063541 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056690.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121995651 122062891 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056691.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 122001731 122035249 + Ganc protein_coding retained_intron MGP_C3HHeJ_T0056692.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 122013603 122021108 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056693.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 122055135 122063013 + Ganc protein_coding retained_intron MGP_C3HHeJ_T0058319.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159325431 159335543 + MGP_C3HHeJ_P0058319 Ergic3 protein_coding protein_coding MGP_C3HHeJ_T0058320.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159325492 159335543 + MGP_C3HHeJ_P0058320 Ergic3 protein_coding protein_coding MGP_C3HHeJ_T0058321.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159325609 159328609 + Ergic3 protein_coding retained_intron MGP_C3HHeJ_T0058322.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159326005 159334902 + MGP_C3HHeJ_P0058322 Ergic3 protein_coding protein_coding MGP_C3HHeJ_T0058323.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159327824 159335351 + MGP_C3HHeJ_P0058323 Ergic3 protein_coding protein_coding MGP_C3HHeJ_T0058324.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159333772 159335414 + Ergic3 protein_coding processed_transcript MGP_C3HHeJ_T0058325.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159334478 159335360 + Ergic3 protein_coding processed_transcript MGP_C3HHeJ_T0058326.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159334757 159335543 + Ergic3 protein_coding retained_intron MGP_C3HHeJ_T0058327.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159334809 159335543 + Ergic3 protein_coding retained_intron MGP_C3HHeJ_T0058328.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159334911 159335541 + Ergic3 protein_coding retained_intron MGP_C3HHeJ_T0101885.1 MGP_C3HHeJ_G0039850.1 mouse_genomes_project 2 37746792 37753443 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0056314.1 MGP_C3HHeJ_G0025974.1 mouse_genomes_project 2 112251015 112251927 - MGP_C3HHeJ_P0056314 Olfr1277 protein_coding protein_coding MGP_C3HHeJ_T0058119.1 MGP_C3HHeJ_G0026429.1 mouse_genomes_project 2 157441481 157455691 + protein_coding retained_intron MGP_C3HHeJ_T0058120.1 MGP_C3HHeJ_G0026429.1 mouse_genomes_project 2 157441481 157459653 + MGP_C3HHeJ_P0058120 protein_coding protein_coding MGP_C3HHeJ_T0058122.1 MGP_C3HHeJ_G0026429.1 mouse_genomes_project 2 157455242 157459653 + protein_coding processed_transcript MGP_C3HHeJ_T0001066.1 MGP_C3HHeJ_G0001002.1 mouse_genomes_project 2 139089432 139089698 + TEC TEC MGP_C3HHeJ_T0010332.1 MGP_C3HHeJ_G0008465.1 mouse_genomes_project 2 64497294 64497399 - Mir6337 miRNA miRNA MGP_C3HHeJ_T0010336.1 MGP_C3HHeJ_G0008469.1 mouse_genomes_project 2 74223361 74223498 - Gm44463 miRNA miRNA MGP_C3HHeJ_T0052837.1 MGP_C3HHeJ_G0025180.1 mouse_genomes_project 2 23099384 23119222 + MGP_C3HHeJ_P0052837 Abca2 protein_coding protein_coding MGP_C3HHeJ_T0052838.1 MGP_C3HHeJ_G0025180.1 mouse_genomes_project 2 23111989 23113599 + Abca2 protein_coding processed_transcript MGP_C3HHeJ_T0052839.1 MGP_C3HHeJ_G0025180.1 mouse_genomes_project 2 23113629 23114495 + Abca2 protein_coding processed_transcript MGP_C3HHeJ_T0052840.1 MGP_C3HHeJ_G0025180.1 mouse_genomes_project 2 23115843 23117547 + Abca2 protein_coding processed_transcript MGP_C3HHeJ_T0052841.1 MGP_C3HHeJ_G0025180.1 mouse_genomes_project 2 23116346 23117749 + Abca2 protein_coding processed_transcript MGP_C3HHeJ_T0052842.1 MGP_C3HHeJ_G0025180.1 mouse_genomes_project 2 23116503 23117224 + Abca2 protein_coding processed_transcript MGP_C3HHeJ_T0052843.1 MGP_C3HHeJ_G0025180.1 mouse_genomes_project 2 23116524 23117158 + Abca2 protein_coding processed_transcript MGP_C3HHeJ_T0055543.1 MGP_C3HHeJ_G0025780.1 mouse_genomes_project 2 88598309 88599245 + MGP_C3HHeJ_P0055543 Olfr1184 protein_coding protein_coding MGP_C3HHeJ_T0013363.1 MGP_C3HHeJ_G0011467.1 mouse_genomes_project 2 37598541 37598857 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007123.1 MGP_C3HHeJ_G0005836.1 mouse_genomes_project 2 54284946 54299892 + Gm14033 lincRNA lincRNA MGP_C3HHeJ_T0007124.1 MGP_C3HHeJ_G0005836.1 mouse_genomes_project 2 54284971 54311998 + Gm14033 lincRNA lincRNA MGP_C3HHeJ_T0013303.1 MGP_C3HHeJ_G0011407.1 mouse_genomes_project 2 16137585 16137902 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055962.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94143750 94312582 - MGP_C3HHeJ_P0055962 Ext2 protein_coding protein_coding MGP_C3HHeJ_T0055963.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94179064 94312601 - MGP_C3HHeJ_P0055963 Ext2 protein_coding protein_coding MGP_C3HHeJ_T0055964.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94179546 94188548 - Ext2 protein_coding retained_intron MGP_C3HHeJ_T0055965.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94179560 94312578 - MGP_C3HHeJ_P0055965 Ext2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055966.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94186393 94190752 - MGP_C3HHeJ_P0055966 Ext2 protein_coding protein_coding MGP_C3HHeJ_T0055967.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94186976 94187947 - MGP_C3HHeJ_P0055967 Ext2 protein_coding protein_coding MGP_C3HHeJ_T0055968.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94199406 94312582 - Ext2 protein_coding processed_transcript MGP_C3HHeJ_T0055969.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94251201 94284412 - Ext2 protein_coding retained_intron MGP_C3HHeJ_T0055970.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94294545 94312598 - MGP_C3HHeJ_P0055970 Ext2 protein_coding protein_coding MGP_C3HHeJ_T0055971.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94301545 94312578 - Ext2 protein_coding retained_intron MGP_C3HHeJ_T0055972.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94301970 94312581 - MGP_C3HHeJ_P0055972 Ext2 protein_coding protein_coding MGP_C3HHeJ_T0055973.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94302355 94312586 - Ext2 protein_coding processed_transcript MGP_C3HHeJ_T0053692.1 MGP_C3HHeJ_G0025326.1 mouse_genomes_project 2 29851677 29885850 - MGP_C3HHeJ_P0053692 Fibcd1 protein_coding protein_coding MGP_C3HHeJ_T0013359.1 MGP_C3HHeJ_G0011463.1 mouse_genomes_project 2 37105450 37106056 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056506.1 MGP_C3HHeJ_G0026045.1 mouse_genomes_project 2 120366760 120386017 + MGP_C3HHeJ_P0056506 Ivd protein_coding protein_coding MGP_C3HHeJ_T0056507.1 MGP_C3HHeJ_G0026045.1 mouse_genomes_project 2 120366834 120373462 + Ivd protein_coding retained_intron MGP_C3HHeJ_T0056508.1 MGP_C3HHeJ_G0026045.1 mouse_genomes_project 2 120374442 120375347 + Ivd protein_coding processed_transcript MGP_C3HHeJ_T0056509.1 MGP_C3HHeJ_G0026045.1 mouse_genomes_project 2 120375372 120380047 + Ivd protein_coding processed_transcript MGP_C3HHeJ_T0056510.1 MGP_C3HHeJ_G0026045.1 mouse_genomes_project 2 120375850 120377846 + Ivd protein_coding retained_intron MGP_C3HHeJ_T0056511.1 MGP_C3HHeJ_G0026045.1 mouse_genomes_project 2 120377391 120383637 + Ivd protein_coding processed_transcript MGP_C3HHeJ_T0056512.1 MGP_C3HHeJ_G0026045.1 mouse_genomes_project 2 120378783 120384072 + Ivd protein_coding processed_transcript MGP_C3HHeJ_T0056513.1 MGP_C3HHeJ_G0026045.1 mouse_genomes_project 2 120379520 120380978 + Ivd protein_coding processed_transcript MGP_C3HHeJ_T0056158.1 MGP_C3HHeJ_G0025934.1 mouse_genomes_project 2 104796386 104812323 + MGP_C3HHeJ_P0056158 Cd59b protein_coding protein_coding MGP_C3HHeJ_T0056376.1 MGP_C3HHeJ_G0026014.1 mouse_genomes_project 2 114541250 114558385 + MGP_C3HHeJ_P0056376 Tmco5b protein_coding protein_coding MGP_C3HHeJ_T0007176.1 MGP_C3HHeJ_G0005881.1 mouse_genomes_project 2 92468344 92472726 - 2900072N19Rik lincRNA lincRNA MGP_C3HHeJ_T0010340.1 MGP_C3HHeJ_G0008473.1 mouse_genomes_project 2 76080301 76080404 + Gm23164 miRNA miRNA MGP_C3HHeJ_T0056394.1 MGP_C3HHeJ_G0026021.1 mouse_genomes_project 2 115373616 115447890 - MGP_C3HHeJ_P0056394 Aqr protein_coding protein_coding MGP_C3HHeJ_T0056395.1 MGP_C3HHeJ_G0026021.1 mouse_genomes_project 2 115377608 115447828 - MGP_C3HHeJ_P0056395 Aqr protein_coding protein_coding MGP_C3HHeJ_T0056396.1 MGP_C3HHeJ_G0026021.1 mouse_genomes_project 2 115384567 115391645 - Aqr protein_coding processed_transcript MGP_C3HHeJ_T0056397.1 MGP_C3HHeJ_G0026021.1 mouse_genomes_project 2 115405437 115413592 - Aqr protein_coding processed_transcript MGP_C3HHeJ_T0056398.1 MGP_C3HHeJ_G0026021.1 mouse_genomes_project 2 115405818 115447797 - Aqr protein_coding processed_transcript MGP_C3HHeJ_T0056399.1 MGP_C3HHeJ_G0026021.1 mouse_genomes_project 2 115425102 115447889 - Aqr protein_coding processed_transcript MGP_C3HHeJ_T0056400.1 MGP_C3HHeJ_G0026021.1 mouse_genomes_project 2 115430980 115447889 - Aqr protein_coding processed_transcript MGP_C3HHeJ_T0056401.1 MGP_C3HHeJ_G0026021.1 mouse_genomes_project 2 115442407 115447967 - Aqr protein_coding processed_transcript MGP_C3HHeJ_T0052769.1 MGP_C3HHeJ_G0025170.1 mouse_genomes_project 2 22938607 22939650 + MGP_C3HHeJ_P0052769 Tmem210 protein_coding protein_coding MGP_C3HHeJ_T0052770.1 MGP_C3HHeJ_G0025170.1 mouse_genomes_project 2 22938663 22939652 + Tmem210 protein_coding processed_transcript MGP_C3HHeJ_T0007090.1 MGP_C3HHeJ_G0005809.1 mouse_genomes_project 2 30625257 30629436 + Gm13412 lincRNA lincRNA MGP_C3HHeJ_T0003845.1 MGP_C3HHeJ_G0003438.1 mouse_genomes_project 2 23298047 23321484 + Fcnaos antisense antisense MGP_C3HHeJ_T0003846.1 MGP_C3HHeJ_G0003438.1 mouse_genomes_project 2 23305727 23321484 + Fcnaos antisense antisense MGP_C3HHeJ_T0003847.1 MGP_C3HHeJ_G0003438.1 mouse_genomes_project 2 23317368 23321485 + Fcnaos antisense antisense MGP_C3HHeJ_T0003848.1 MGP_C3HHeJ_G0003438.1 mouse_genomes_project 2 23320371 23321487 + Fcnaos antisense antisense MGP_C3HHeJ_T0054881.1 MGP_C3HHeJ_G0025543.1 mouse_genomes_project 2 69846383 69849151 + MGP_C3HHeJ_P0054881 Sp5 protein_coding protein_coding MGP_C3HHeJ_T0056315.1 MGP_C3HHeJ_G0025975.1 mouse_genomes_project 2 112267800 112268807 + MGP_C3HHeJ_P0056315 Olfr1278 protein_coding protein_coding MGP_C3HHeJ_T0059522.1 MGP_C3HHeJ_G0026738.1 mouse_genomes_project 2 185987120 185990158 + MGP_C3HHeJ_P0059522 Lime1 protein_coding protein_coding MGP_C3HHeJ_T0059523.1 MGP_C3HHeJ_G0026738.1 mouse_genomes_project 2 185988277 185990671 + MGP_C3HHeJ_P0059523 Lime1 protein_coding protein_coding MGP_C3HHeJ_T0059524.1 MGP_C3HHeJ_G0026738.1 mouse_genomes_project 2 185988400 185990597 + Lime1 protein_coding retained_intron MGP_C3HHeJ_T0059525.1 MGP_C3HHeJ_G0026738.1 mouse_genomes_project 2 185988400 185989997 + Lime1 protein_coding retained_intron MGP_C3HHeJ_T0059526.1 MGP_C3HHeJ_G0026738.1 mouse_genomes_project 2 185988400 185990666 + MGP_C3HHeJ_P0059526 Lime1 protein_coding protein_coding MGP_C3HHeJ_T0059527.1 MGP_C3HHeJ_G0026738.1 mouse_genomes_project 2 185988914 185990671 + MGP_C3HHeJ_P0059527 Lime1 protein_coding protein_coding MGP_C3HHeJ_T0059529.1 MGP_C3HHeJ_G0026738.1 mouse_genomes_project 2 185989528 185990356 + Lime1 protein_coding retained_intron MGP_C3HHeJ_T0058904.1 MGP_C3HHeJ_G0026603.1 mouse_genomes_project 2 168772028 168807326 - MGP_C3HHeJ_P0058904 Ncoa5 protein_coding protein_coding MGP_C3HHeJ_T0058905.1 MGP_C3HHeJ_G0026603.1 mouse_genomes_project 2 168772031 168807276 - MGP_C3HHeJ_P0058905 Ncoa5 protein_coding protein_coding MGP_C3HHeJ_T0058906.1 MGP_C3HHeJ_G0026603.1 mouse_genomes_project 2 168772034 168807247 - MGP_C3HHeJ_P0058906 Ncoa5 protein_coding protein_coding MGP_C3HHeJ_T0058907.1 MGP_C3HHeJ_G0026603.1 mouse_genomes_project 2 168774345 168776328 - Ncoa5 protein_coding retained_intron MGP_C3HHeJ_T0058908.1 MGP_C3HHeJ_G0026603.1 mouse_genomes_project 2 168781774 168807262 - Ncoa5 protein_coding retained_intron MGP_C3HHeJ_T0058909.1 MGP_C3HHeJ_G0026603.1 mouse_genomes_project 2 168785688 168807288 - MGP_C3HHeJ_P0058909 Ncoa5 protein_coding protein_coding MGP_C3HHeJ_T0058910.1 MGP_C3HHeJ_G0026603.1 mouse_genomes_project 2 168795356 168795898 - Ncoa5 protein_coding processed_transcript MGP_C3HHeJ_T0058911.1 MGP_C3HHeJ_G0026603.1 mouse_genomes_project 2 168795626 168807246 - Ncoa5 protein_coding retained_intron MGP_C3HHeJ_T0010268.1 MGP_C3HHeJ_G0008401.1 mouse_genomes_project 2 7699453 7711639 + miRNA miRNA MGP_C3HHeJ_T0013598.1 MGP_C3HHeJ_G0011702.1 mouse_genomes_project 2 128907914 128908763 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100497.1 MGP_C3HHeJ_G0038691.1 mouse_genomes_project 2 154037763 154037899 - snoRNA snoRNA MGP_C3HHeJ_T0101888.1 MGP_C3HHeJ_G0039853.1 mouse_genomes_project 2 85162292 85163188 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0057128.1 MGP_C3HHeJ_G0026170.1 mouse_genomes_project 2 129263705 129286186 - MGP_C3HHeJ_P0057128 1810024B03Rik protein_coding protein_coding MGP_C3HHeJ_T0057129.1 MGP_C3HHeJ_G0026170.1 mouse_genomes_project 2 129279912 129286160 - 1810024B03Rik protein_coding processed_transcript MGP_C3HHeJ_T0055834.1 MGP_C3HHeJ_G0025876.1 mouse_genomes_project 2 92045879 92069605 - MGP_C3HHeJ_P0055834 Atg13 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055835.1 MGP_C3HHeJ_G0025876.1 mouse_genomes_project 2 92045882 92088030 - MGP_C3HHeJ_P0055835 Atg13 protein_coding protein_coding MGP_C3HHeJ_T0055836.1 MGP_C3HHeJ_G0025876.1 mouse_genomes_project 2 92045883 92087973 - MGP_C3HHeJ_P0055836 Atg13 protein_coding protein_coding MGP_C3HHeJ_T0055837.1 MGP_C3HHeJ_G0025876.1 mouse_genomes_project 2 92047582 92053420 - Atg13 protein_coding processed_transcript MGP_C3HHeJ_T0055838.1 MGP_C3HHeJ_G0025876.1 mouse_genomes_project 2 92050642 92056443 - Atg13 protein_coding processed_transcript MGP_C3HHeJ_T0055839.1 MGP_C3HHeJ_G0025876.1 mouse_genomes_project 2 92059912 92083213 - Atg13 protein_coding processed_transcript MGP_C3HHeJ_T0058092.1 MGP_C3HHeJ_G0026418.1 mouse_genomes_project 2 157051491 157071491 + MGP_C3HHeJ_P0058092 Bpifb2 protein_coding protein_coding MGP_C3HHeJ_T0058093.1 MGP_C3HHeJ_G0026418.1 mouse_genomes_project 2 157051521 157052832 + Bpifb2 protein_coding retained_intron MGP_C3HHeJ_T0052594.1 MGP_C3HHeJ_G0025141.1 mouse_genomes_project 2 21903744 21906369 + MGP_C3HHeJ_P0052594 Il1f10 protein_coding protein_coding MGP_C3HHeJ_T0013521.1 MGP_C3HHeJ_G0011625.1 mouse_genomes_project 2 92991101 92991513 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100471.1 MGP_C3HHeJ_G0038665.1 mouse_genomes_project 2 97779042 97779171 + Gm22313 snoRNA snoRNA MGP_C3HHeJ_T0003840.1 MGP_C3HHeJ_G0003433.1 mouse_genomes_project 2 18263132 18266991 - Gm13362 antisense antisense MGP_C3HHeJ_T0101874.1 MGP_C3HHeJ_G0039839.1 mouse_genomes_project 2 21866827 21871436 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007047.1 MGP_C3HHeJ_G0005777.1 mouse_genomes_project 2 4148143 4153360 + Gm26565 lincRNA lincRNA MGP_C3HHeJ_T0057345.1 MGP_C3HHeJ_G0026227.1 mouse_genomes_project 2 132755488 132756403 + MGP_C3HHeJ_P0057345 Oxt protein_coding protein_coding MGP_C3HHeJ_T0007132.1 MGP_C3HHeJ_G0005844.1 mouse_genomes_project 2 65311861 65362138 + Gm28638 lincRNA lincRNA MGP_C3HHeJ_T0056318.1 MGP_C3HHeJ_G0025978.1 mouse_genomes_project 2 112363860 112364985 + MGP_C3HHeJ_P0056318 protein_coding protein_coding MGP_C3HHeJ_T0059267.1 MGP_C3HHeJ_G0026684.1 mouse_genomes_project 2 178749312 178761011 + MGP_C3HHeJ_P0059267 Nelfcd protein_coding protein_coding MGP_C3HHeJ_T0059268.1 MGP_C3HHeJ_G0026684.1 mouse_genomes_project 2 178749359 178761011 + MGP_C3HHeJ_P0059268 Nelfcd protein_coding protein_coding MGP_C3HHeJ_T0059269.1 MGP_C3HHeJ_G0026684.1 mouse_genomes_project 2 178749388 178756181 + Nelfcd protein_coding processed_transcript MGP_C3HHeJ_T0059270.1 MGP_C3HHeJ_G0026684.1 mouse_genomes_project 2 178756900 178758422 + Nelfcd protein_coding retained_intron MGP_C3HHeJ_T0059271.1 MGP_C3HHeJ_G0026684.1 mouse_genomes_project 2 178758188 178759457 + Nelfcd protein_coding retained_intron MGP_C3HHeJ_T0059272.1 MGP_C3HHeJ_G0026684.1 mouse_genomes_project 2 178759870 178760906 + Nelfcd protein_coding retained_intron MGP_C3HHeJ_T0057793.1 MGP_C3HHeJ_G0026324.1 mouse_genomes_project 2 150888609 150891682 - MGP_C3HHeJ_P0057793 Foxa2 protein_coding protein_coding MGP_C3HHeJ_T0057794.1 MGP_C3HHeJ_G0026324.1 mouse_genomes_project 2 150888609 150892703 - MGP_C3HHeJ_P0057794 Foxa2 protein_coding protein_coding MGP_C3HHeJ_T0057795.1 MGP_C3HHeJ_G0026324.1 mouse_genomes_project 2 150889274 150892630 - MGP_C3HHeJ_P0057795 Foxa2 protein_coding protein_coding MGP_C3HHeJ_T0057796.1 MGP_C3HHeJ_G0026324.1 mouse_genomes_project 2 150889972 150891198 - Foxa2 protein_coding processed_transcript MGP_C3HHeJ_T0098109.1 MGP_C3HHeJ_G0036321.1 mouse_genomes_project 2 119829065 119829159 + Gm22651 rRNA rRNA MGP_C3HHeJ_T0053782.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30440952 30469964 + MGP_C3HHeJ_P0053782 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053783.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30454838 30459236 + Ciz1 protein_coding processed_transcript MGP_C3HHeJ_T0053784.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30454838 30459357 + MGP_C3HHeJ_P0053784 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053785.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30454889 30461951 + MGP_C3HHeJ_P0053785 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053786.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30455026 30469964 + MGP_C3HHeJ_P0053786 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053787.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30455026 30469970 + MGP_C3HHeJ_P0053787 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053788.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30455181 30472640 + Ciz1 protein_coding retained_intron MGP_C3HHeJ_T0053789.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30455261 30457680 + Ciz1 protein_coding processed_transcript MGP_C3HHeJ_T0053790.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30455382 30462152 + MGP_C3HHeJ_P0053790 Ciz1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053791.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30455584 30456816 + Ciz1 protein_coding retained_intron MGP_C3HHeJ_T0053792.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30455633 30469970 + MGP_C3HHeJ_P0053792 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053793.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30455638 30469965 + MGP_C3HHeJ_P0053793 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053794.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30457173 30459343 + Ciz1 protein_coding retained_intron MGP_C3HHeJ_T0053795.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30459240 30463122 + MGP_C3HHeJ_P0053795 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053796.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30459300 30464134 + MGP_C3HHeJ_P0053796 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053797.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30461890 30463579 + Ciz1 protein_coding processed_transcript MGP_C3HHeJ_T0053798.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30462737 30467205 + MGP_C3HHeJ_P0053798 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053799.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30463663 30466223 + Ciz1 protein_coding retained_intron MGP_C3HHeJ_T0053800.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30464145 30466667 + Ciz1 protein_coding retained_intron MGP_C3HHeJ_T0053801.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30465875 30469966 + Ciz1 protein_coding retained_intron MGP_C3HHeJ_T0053802.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30466774 30468057 + Ciz1 protein_coding retained_intron MGP_C3HHeJ_T0053803.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30467155 30471896 + MGP_C3HHeJ_P0053803 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0001021.1 MGP_C3HHeJ_G0000958.1 mouse_genomes_project 2 12361132 12362458 + TEC TEC MGP_C3HHeJ_T0003954.1 MGP_C3HHeJ_G0003515.1 mouse_genomes_project 2 77097426 77117294 + Gm13944 antisense antisense MGP_C3HHeJ_T0003955.1 MGP_C3HHeJ_G0003515.1 mouse_genomes_project 2 77097434 77117639 + Gm13944 antisense antisense MGP_C3HHeJ_T0055561.1 MGP_C3HHeJ_G0025797.1 mouse_genomes_project 2 89056410 89057343 - MGP_C3HHeJ_P0055561 Olfr1209 protein_coding protein_coding MGP_C3HHeJ_T0010258.1 MGP_C3HHeJ_G0008391.1 mouse_genomes_project 2 7691942 7692036 + Mir466f-2 miRNA miRNA MGP_C3HHeJ_T0013615.1 MGP_C3HHeJ_G0011719.1 mouse_genomes_project 2 133693742 133694259 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004097.1 MGP_C3HHeJ_G0003617.1 mouse_genomes_project 2 171116355 171117579 + Gm14291 antisense antisense MGP_C3HHeJ_T0058601.1 MGP_C3HHeJ_G0026514.1 mouse_genomes_project 2 162105030 162110012 + MGP_C3HHeJ_P0058601 Slc32a1 protein_coding protein_coding MGP_C3HHeJ_T0055573.1 MGP_C3HHeJ_G0025807.1 mouse_genomes_project 2 89265291 89266227 - MGP_C3HHeJ_P0055573 Olfr1220 protein_coding protein_coding MGP_C3HHeJ_T0056349.1 MGP_C3HHeJ_G0026006.1 mouse_genomes_project 2 113494379 113588253 + MGP_C3HHeJ_P0056349 protein_coding protein_coding MGP_C3HHeJ_T0056351.1 MGP_C3HHeJ_G0026006.1 mouse_genomes_project 2 113495288 113585137 + MGP_C3HHeJ_P0056351 protein_coding protein_coding MGP_C3HHeJ_T0056352.1 MGP_C3HHeJ_G0026006.1 mouse_genomes_project 2 113495364 113592158 + MGP_C3HHeJ_P0056352 protein_coding protein_coding MGP_C3HHeJ_T0056353.1 MGP_C3HHeJ_G0026006.1 mouse_genomes_project 2 113518120 113592158 + MGP_C3HHeJ_P0056353 protein_coding protein_coding MGP_C3HHeJ_T0056354.1 MGP_C3HHeJ_G0026006.1 mouse_genomes_project 2 113576009 113580503 + protein_coding processed_transcript MGP_C3HHeJ_T0056355.1 MGP_C3HHeJ_G0026006.1 mouse_genomes_project 2 113581389 113583112 + protein_coding processed_transcript MGP_C3HHeJ_T0056356.1 MGP_C3HHeJ_G0026006.1 mouse_genomes_project 2 113583075 113585994 + protein_coding processed_transcript MGP_C3HHeJ_T0056357.1 MGP_C3HHeJ_G0026006.1 mouse_genomes_project 2 113585302 113592165 + protein_coding retained_intron MGP_C3HHeJ_T0054210.1 MGP_C3HHeJ_G0025427.1 mouse_genomes_project 2 35715626 35721046 - MGP_C3HHeJ_P0054210 Zbtb6 protein_coding protein_coding MGP_C3HHeJ_T0054211.1 MGP_C3HHeJ_G0025427.1 mouse_genomes_project 2 35715629 35733286 - MGP_C3HHeJ_P0054211 Zbtb6 protein_coding protein_coding MGP_C3HHeJ_T0057453.1 MGP_C3HHeJ_G0026249.1 mouse_genomes_project 2 133516699 133571199 - MGP_C3HHeJ_P0057453 Rnf24 protein_coding protein_coding MGP_C3HHeJ_T0057454.1 MGP_C3HHeJ_G0026249.1 mouse_genomes_project 2 133516700 133532015 - MGP_C3HHeJ_P0057454 Rnf24 protein_coding protein_coding MGP_C3HHeJ_T0057455.1 MGP_C3HHeJ_G0026249.1 mouse_genomes_project 2 133516702 133548541 - MGP_C3HHeJ_P0057455 Rnf24 protein_coding protein_coding MGP_C3HHeJ_T0057456.1 MGP_C3HHeJ_G0026249.1 mouse_genomes_project 2 133521696 133571180 - MGP_C3HHeJ_P0057456 Rnf24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057457.1 MGP_C3HHeJ_G0026249.1 mouse_genomes_project 2 133531257 133571210 - Rnf24 protein_coding retained_intron MGP_C3HHeJ_T0098111.1 MGP_C3HHeJ_G0036323.1 mouse_genomes_project 2 122255867 122255992 - n-R5s205 rRNA rRNA MGP_C3HHeJ_T0052564.1 MGP_C3HHeJ_G0025130.1 mouse_genomes_project 2 20646846 20690514 - MGP_C3HHeJ_P0052564 Mastl protein_coding protein_coding MGP_C3HHeJ_T0052565.1 MGP_C3HHeJ_G0025130.1 mouse_genomes_project 2 20670450 20690387 - Mastl protein_coding processed_transcript MGP_C3HHeJ_T0013549.1 MGP_C3HHeJ_G0011653.1 mouse_genomes_project 2 104567172 104567454 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057554.1 MGP_C3HHeJ_G0026270.1 mouse_genomes_project 2 135865027 135876338 + MGP_C3HHeJ_P0057554 Bmp2 protein_coding protein_coding MGP_C3HHeJ_T0004086.1 MGP_C3HHeJ_G0003610.1 mouse_genomes_project 2 167878541 167897528 + A730032A03Rik antisense antisense MGP_C3HHeJ_T0004087.1 MGP_C3HHeJ_G0003610.1 mouse_genomes_project 2 167893732 167897528 + A730032A03Rik antisense antisense MGP_C3HHeJ_T0056294.1 MGP_C3HHeJ_G0025964.1 mouse_genomes_project 2 111216597 111271576 - MGP_C3HHeJ_P0056294 Bbox1 protein_coding protein_coding MGP_C3HHeJ_T0056295.1 MGP_C3HHeJ_G0025964.1 mouse_genomes_project 2 111258862 111281378 - MGP_C3HHeJ_P0056295 Bbox1 protein_coding protein_coding MGP_C3HHeJ_T0052765.1 MGP_C3HHeJ_G0025169.1 mouse_genomes_project 2 22921908 22936378 + MGP_C3HHeJ_P0052765 Anapc2 protein_coding protein_coding MGP_C3HHeJ_T0052766.1 MGP_C3HHeJ_G0025169.1 mouse_genomes_project 2 22922025 22927147 + Anapc2 protein_coding processed_transcript MGP_C3HHeJ_T0052767.1 MGP_C3HHeJ_G0025169.1 mouse_genomes_project 2 22922908 22929181 + MGP_C3HHeJ_P0052767 Anapc2 protein_coding protein_coding MGP_C3HHeJ_T0052768.1 MGP_C3HHeJ_G0025169.1 mouse_genomes_project 2 22929768 22931233 + Anapc2 protein_coding processed_transcript MGP_C3HHeJ_T0010410.1 MGP_C3HHeJ_G0008543.1 mouse_genomes_project 2 185494846 185494914 + Mir124a-3 miRNA miRNA MGP_C3HHeJ_T0007175.1 MGP_C3HHeJ_G0005880.1 mouse_genomes_project 2 92454479 92512656 - lincRNA lincRNA MGP_C3HHeJ_T0058829.1 MGP_C3HHeJ_G0026585.1 mouse_genomes_project 2 168447995 168451946 + MGP_C3HHeJ_P0058829 Spint4 protein_coding protein_coding MGP_C3HHeJ_T0013695.1 MGP_C3HHeJ_G0011799.1 mouse_genomes_project 2 160243608 160243845 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055894.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92793522 92799459 - MGP_C3HHeJ_P0055894 Gyltl1b protein_coding protein_coding MGP_C3HHeJ_T0055895.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92793522 92799530 - MGP_C3HHeJ_P0055895 Gyltl1b protein_coding protein_coding MGP_C3HHeJ_T0055896.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92793523 92799509 - Gyltl1b protein_coding retained_intron MGP_C3HHeJ_T0055897.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92793527 92799491 - MGP_C3HHeJ_P0055897 Gyltl1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055898.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92793528 92799484 - MGP_C3HHeJ_P0055898 Gyltl1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055899.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92793536 92799501 - MGP_C3HHeJ_P0055899 Gyltl1b protein_coding protein_coding MGP_C3HHeJ_T0055900.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92793536 92800440 - MGP_C3HHeJ_P0055900 Gyltl1b protein_coding protein_coding MGP_C3HHeJ_T0055901.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92793547 92799506 - MGP_C3HHeJ_P0055901 Gyltl1b protein_coding protein_coding MGP_C3HHeJ_T0055902.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92794268 92794998 - Gyltl1b protein_coding retained_intron MGP_C3HHeJ_T0055903.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92794451 92795253 - Gyltl1b protein_coding retained_intron MGP_C3HHeJ_T0055904.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92795494 92797951 - Gyltl1b protein_coding retained_intron MGP_C3HHeJ_T0055905.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92795790 92798138 - Gyltl1b protein_coding processed_transcript MGP_C3HHeJ_T0055906.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92795863 92798546 - Gyltl1b protein_coding retained_intron MGP_C3HHeJ_T0055907.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92796545 92799506 - Gyltl1b protein_coding retained_intron MGP_C3HHeJ_T0055908.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92798182 92799491 - Gyltl1b protein_coding retained_intron MGP_C3HHeJ_T0055909.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92798407 92803715 - MGP_C3HHeJ_P0055909 Gyltl1b protein_coding protein_coding MGP_C3HHeJ_T0055910.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92798457 92800418 - Gyltl1b protein_coding retained_intron MGP_C3HHeJ_T0052720.1 MGP_C3HHeJ_G0025158.1 mouse_genomes_project 2 22860758 22862203 - Stpg3 protein_coding processed_transcript MGP_C3HHeJ_T0052721.1 MGP_C3HHeJ_G0025158.1 mouse_genomes_project 2 22860759 22863183 - Stpg3 protein_coding processed_transcript MGP_C3HHeJ_T0052722.1 MGP_C3HHeJ_G0025158.1 mouse_genomes_project 2 22861110 22863182 - MGP_C3HHeJ_P0052722 Stpg3 protein_coding protein_coding MGP_C3HHeJ_T0052723.1 MGP_C3HHeJ_G0025158.1 mouse_genomes_project 2 22861313 22863189 - MGP_C3HHeJ_P0052723 Stpg3 protein_coding protein_coding MGP_C3HHeJ_T0052724.1 MGP_C3HHeJ_G0025158.1 mouse_genomes_project 2 22861469 22863143 - Stpg3 protein_coding processed_transcript MGP_C3HHeJ_T0013401.1 MGP_C3HHeJ_G0011505.1 mouse_genomes_project 2 52365034 52365801 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057152.1 MGP_C3HHeJ_G0026176.1 mouse_genomes_project 2 129418969 129437947 + MGP_C3HHeJ_P0057152 Astl protein_coding protein_coding MGP_C3HHeJ_T0057153.1 MGP_C3HHeJ_G0026176.1 mouse_genomes_project 2 129421955 129437946 + MGP_C3HHeJ_P0057153 Astl protein_coding protein_coding MGP_C3HHeJ_T0057154.1 MGP_C3HHeJ_G0026176.1 mouse_genomes_project 2 129421969 129437945 + MGP_C3HHeJ_P0057154 Astl protein_coding protein_coding MGP_C3HHeJ_T0057155.1 MGP_C3HHeJ_G0026176.1 mouse_genomes_project 2 129422243 129430466 + MGP_C3HHeJ_P0057155 Astl protein_coding protein_coding MGP_C3HHeJ_T0053899.1 MGP_C3HHeJ_G0025356.1 mouse_genomes_project 2 30870857 30875640 + MGP_C3HHeJ_P0053899 Tor2a protein_coding protein_coding MGP_C3HHeJ_T0053900.1 MGP_C3HHeJ_G0025356.1 mouse_genomes_project 2 30870868 30875335 + MGP_C3HHeJ_P0053900 Tor2a protein_coding protein_coding MGP_C3HHeJ_T0053901.1 MGP_C3HHeJ_G0025356.1 mouse_genomes_project 2 30870878 30875126 + MGP_C3HHeJ_P0053901 Tor2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053902.1 MGP_C3HHeJ_G0025356.1 mouse_genomes_project 2 30870883 30875640 + MGP_C3HHeJ_P0053902 Tor2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053903.1 MGP_C3HHeJ_G0025356.1 mouse_genomes_project 2 30870899 30875638 + Tor2a protein_coding retained_intron MGP_C3HHeJ_T0053904.1 MGP_C3HHeJ_G0025356.1 mouse_genomes_project 2 30870914 30871607 + Tor2a protein_coding processed_transcript MGP_C3HHeJ_T0053905.1 MGP_C3HHeJ_G0025356.1 mouse_genomes_project 2 30870942 30874990 + MGP_C3HHeJ_P0053905 Tor2a protein_coding protein_coding MGP_C3HHeJ_T0053906.1 MGP_C3HHeJ_G0025356.1 mouse_genomes_project 2 30873917 30875185 + Tor2a protein_coding retained_intron MGP_C3HHeJ_T0010272.1 MGP_C3HHeJ_G0008405.1 mouse_genomes_project 2 7713024 7713120 + Gm23542 miRNA miRNA MGP_C3HHeJ_T0052360.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 11983989 11986663 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0052361.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 11986355 12383652 + MGP_C3HHeJ_P0052361 Cacnb2 protein_coding protein_coding MGP_C3HHeJ_T0052362.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 11987171 12355792 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0052363.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12117551 12383651 + Cacnb2 protein_coding processed_transcript MGP_C3HHeJ_T0052364.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12143190 12356626 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0052365.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12216057 12367087 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0052366.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12216123 12378835 + MGP_C3HHeJ_P0052366 Cacnb2 protein_coding protein_coding MGP_C3HHeJ_T0052367.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12268742 12367002 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0052368.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12268743 12367087 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0052369.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12268756 12378773 + MGP_C3HHeJ_P0052369 Cacnb2 protein_coding protein_coding MGP_C3HHeJ_T0052370.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12269078 12358602 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0052371.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12269508 12292780 + MGP_C3HHeJ_P0052371 Cacnb2 protein_coding protein_coding MGP_C3HHeJ_T0052372.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12269835 12360354 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0052373.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12269839 12382840 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0052374.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12355710 12374001 + MGP_C3HHeJ_P0052374 Cacnb2 protein_coding protein_coding MGP_C3HHeJ_T0052375.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12374736 12377038 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0100516.1 MGP_C3HHeJ_G0038710.1 mouse_genomes_project 2 172915728 172915857 - Gm25214 snoRNA snoRNA MGP_C3HHeJ_T0053285.1 MGP_C3HHeJ_G0025267.1 mouse_genomes_project 2 26675253 26682359 + Ddx31 protein_coding processed_transcript MGP_C3HHeJ_T0053286.1 MGP_C3HHeJ_G0025267.1 mouse_genomes_project 2 26675306 26744173 + MGP_C3HHeJ_P0053286 Ddx31 protein_coding protein_coding MGP_C3HHeJ_T0053287.1 MGP_C3HHeJ_G0025267.1 mouse_genomes_project 2 26679749 26691075 + Ddx31 protein_coding processed_transcript MGP_C3HHeJ_T0053288.1 MGP_C3HHeJ_G0025267.1 mouse_genomes_project 2 26691984 26694921 + Ddx31 protein_coding processed_transcript MGP_C3HHeJ_T0100505.1 MGP_C3HHeJ_G0038699.1 mouse_genomes_project 2 161828248 161828380 - Gm23925 snoRNA snoRNA MGP_C3HHeJ_T0054831.1 MGP_C3HHeJ_G0025534.1 mouse_genomes_project 2 69024822 69054364 - MGP_C3HHeJ_P0054831 Fastkd1 protein_coding protein_coding MGP_C3HHeJ_T0054832.1 MGP_C3HHeJ_G0025534.1 mouse_genomes_project 2 69024944 69054216 - MGP_C3HHeJ_P0054832 Fastkd1 protein_coding protein_coding MGP_C3HHeJ_T0054833.1 MGP_C3HHeJ_G0025534.1 mouse_genomes_project 2 69043706 69056271 - Fastkd1 protein_coding retained_intron MGP_C3HHeJ_T0054834.1 MGP_C3HHeJ_G0025534.1 mouse_genomes_project 2 69048374 69056289 - Fastkd1 protein_coding retained_intron MGP_C3HHeJ_T0059013.1 MGP_C3HHeJ_G0026621.1 mouse_genomes_project 2 170688584 170785375 + MGP_C3HHeJ_P0059013 Arfgef2 protein_coding protein_coding MGP_C3HHeJ_T0059014.1 MGP_C3HHeJ_G0026621.1 mouse_genomes_project 2 170709823 170732627 + MGP_C3HHeJ_P0059014 Arfgef2 protein_coding protein_coding MGP_C3HHeJ_T0013395.1 MGP_C3HHeJ_G0011499.1 mouse_genomes_project 2 50552253 50552918 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100457.1 MGP_C3HHeJ_G0038651.1 mouse_genomes_project 2 56570261 56570412 - Gm25388 snoRNA snoRNA MGP_C3HHeJ_T0013530.1 MGP_C3HHeJ_G0011634.1 mouse_genomes_project 2 97591334 97592735 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003945.1 MGP_C3HHeJ_G0003509.1 mouse_genomes_project 2 73176271 73178265 + Chn1os1 antisense antisense MGP_C3HHeJ_T0003933.1 MGP_C3HHeJ_G0003502.1 mouse_genomes_project 2 71707816 71712567 - Rapgef4os3 antisense antisense MGP_C3HHeJ_T0056588.1 MGP_C3HHeJ_G0026068.1 mouse_genomes_project 2 121205311 121215524 - MGP_C3HHeJ_P0056588 Ndufaf1 protein_coding protein_coding MGP_C3HHeJ_T0056589.1 MGP_C3HHeJ_G0026068.1 mouse_genomes_project 2 121211498 121215502 - Ndufaf1 protein_coding processed_transcript MGP_C3HHeJ_T0056590.1 MGP_C3HHeJ_G0026068.1 mouse_genomes_project 2 121211678 121215517 - Ndufaf1 protein_coding processed_transcript MGP_C3HHeJ_T0056056.1 MGP_C3HHeJ_G0025916.1 mouse_genomes_project 2 103000099 103105600 - MGP_C3HHeJ_P0056056 Trim44 protein_coding protein_coding MGP_C3HHeJ_T0056057.1 MGP_C3HHeJ_G0025916.1 mouse_genomes_project 2 103004468 103104957 - MGP_C3HHeJ_P0056057 Trim44 protein_coding protein_coding MGP_C3HHeJ_T0056058.1 MGP_C3HHeJ_G0025916.1 mouse_genomes_project 2 103058672 103113653 - MGP_C3HHeJ_P0056058 Trim44 protein_coding protein_coding MGP_C3HHeJ_T0000999.1 MGP_C3HHeJ_G0000936.1 mouse_genomes_project 2 8622853 8623974 - TEC TEC MGP_C3HHeJ_T0010298.1 MGP_C3HHeJ_G0008431.1 mouse_genomes_project 2 23113460 23113516 + Mir3087 miRNA miRNA MGP_C3HHeJ_T0058418.1 MGP_C3HHeJ_G0026480.1 mouse_genomes_project 2 159632108 159632966 - MGP_C3HHeJ_P0058418 Scand1 protein_coding protein_coding MGP_C3HHeJ_T0007228.1 MGP_C3HHeJ_G0005921.1 mouse_genomes_project 2 119286578 119377677 + 4930412B13Rik lincRNA lincRNA MGP_C3HHeJ_T0059027.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170835652 170896151 - MGP_C3HHeJ_P0059027 Stau1 protein_coding protein_coding MGP_C3HHeJ_T0059028.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170836250 170843488 - Stau1 protein_coding retained_intron MGP_C3HHeJ_T0059029.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170836250 170896138 - MGP_C3HHeJ_P0059029 Stau1 protein_coding protein_coding MGP_C3HHeJ_T0059030.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170836250 170895976 - MGP_C3HHeJ_P0059030 Stau1 protein_coding protein_coding MGP_C3HHeJ_T0059031.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170836376 170896172 - MGP_C3HHeJ_P0059031 Stau1 protein_coding protein_coding MGP_C3HHeJ_T0059032.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170837349 170839335 - Stau1 protein_coding retained_intron MGP_C3HHeJ_T0059033.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170837395 170853686 - MGP_C3HHeJ_P0059033 Stau1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059034.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170837797 170839060 - Stau1 protein_coding retained_intron MGP_C3HHeJ_T0059035.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170840407 170848426 - Stau1 protein_coding retained_intron MGP_C3HHeJ_T0059036.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170841010 170852411 - Stau1 protein_coding retained_intron MGP_C3HHeJ_T0059037.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170852476 170870330 - Stau1 protein_coding processed_transcript MGP_C3HHeJ_T0057005.1 MGP_C3HHeJ_G0026141.1 mouse_genomes_project 2 127016283 127037839 + MGP_C3HHeJ_P0057005 Slc24a5 protein_coding protein_coding MGP_C3HHeJ_T0057006.1 MGP_C3HHeJ_G0026141.1 mouse_genomes_project 2 127017398 127032476 + Slc24a5 protein_coding processed_transcript MGP_C3HHeJ_T0057007.1 MGP_C3HHeJ_G0026141.1 mouse_genomes_project 2 127028939 127032329 + Slc24a5 protein_coding retained_intron MGP_C3HHeJ_T0055483.1 MGP_C3HHeJ_G0025731.1 mouse_genomes_project 2 87408816 87409761 + MGP_C3HHeJ_P0055483 Olfr1120 protein_coding protein_coding MGP_C3HHeJ_T0052936.1 MGP_C3HHeJ_G0025200.1 mouse_genomes_project 2 23388902 23394560 + MGP_C3HHeJ_P0052936 Obp2a protein_coding protein_coding MGP_C3HHeJ_T0056886.1 MGP_C3HHeJ_G0026114.1 mouse_genomes_project 2 123093675 123097772 + MGP_C3HHeJ_P0056886 Serf2 protein_coding protein_coding MGP_C3HHeJ_T0056887.1 MGP_C3HHeJ_G0026114.1 mouse_genomes_project 2 123093848 123097357 + Serf2 protein_coding retained_intron MGP_C3HHeJ_T0056888.1 MGP_C3HHeJ_G0026114.1 mouse_genomes_project 2 123093858 123095790 + MGP_C3HHeJ_P0056888 Serf2 protein_coding protein_coding MGP_C3HHeJ_T0056889.1 MGP_C3HHeJ_G0026114.1 mouse_genomes_project 2 123093863 123095554 + MGP_C3HHeJ_P0056889 Serf2 protein_coding protein_coding MGP_C3HHeJ_T0056890.1 MGP_C3HHeJ_G0026114.1 mouse_genomes_project 2 123093892 123102692 + MGP_C3HHeJ_P0056890 Serf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056891.1 MGP_C3HHeJ_G0026114.1 mouse_genomes_project 2 123093892 123102690 + MGP_C3HHeJ_P0056891 Serf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057989.1 MGP_C3HHeJ_G0026395.1 mouse_genomes_project 2 155838522 155850164 + MGP_C3HHeJ_P0057989 Cox4i2 protein_coding protein_coding MGP_C3HHeJ_T0057990.1 MGP_C3HHeJ_G0026395.1 mouse_genomes_project 2 155839443 155850161 + MGP_C3HHeJ_P0057990 Cox4i2 protein_coding protein_coding MGP_C3HHeJ_T0053329.1 MGP_C3HHeJ_G0025274.1 mouse_genomes_project 2 27514896 27639352 + MGP_C3HHeJ_P0053329 Rapgef1 protein_coding protein_coding MGP_C3HHeJ_T0053330.1 MGP_C3HHeJ_G0025274.1 mouse_genomes_project 2 27514917 27639362 + MGP_C3HHeJ_P0053330 Rapgef1 protein_coding protein_coding MGP_C3HHeJ_T0053331.1 MGP_C3HHeJ_G0025274.1 mouse_genomes_project 2 27514946 27639970 + MGP_C3HHeJ_P0053331 Rapgef1 protein_coding protein_coding MGP_C3HHeJ_T0053332.1 MGP_C3HHeJ_G0025274.1 mouse_genomes_project 2 27514998 27639361 + MGP_C3HHeJ_P0053332 Rapgef1 protein_coding protein_coding MGP_C3HHeJ_T0053333.1 MGP_C3HHeJ_G0025274.1 mouse_genomes_project 2 27515727 27637326 + MGP_C3HHeJ_P0053333 Rapgef1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053334.1 MGP_C3HHeJ_G0025274.1 mouse_genomes_project 2 27629778 27634847 + Rapgef1 protein_coding processed_transcript MGP_C3HHeJ_T0053335.1 MGP_C3HHeJ_G0025274.1 mouse_genomes_project 2 27631558 27633223 + Rapgef1 protein_coding retained_intron MGP_C3HHeJ_T0059088.1 MGP_C3HHeJ_G0026635.1 mouse_genomes_project 2 171587197 171606160 - MGP_C3HHeJ_P0059088 protein_coding protein_coding MGP_C3HHeJ_T0059089.1 MGP_C3HHeJ_G0026635.1 mouse_genomes_project 2 171587829 171636484 - protein_coding processed_transcript MGP_C3HHeJ_T0059090.1 MGP_C3HHeJ_G0026635.1 mouse_genomes_project 2 171588337 171589781 - protein_coding retained_intron MGP_C3HHeJ_T0059091.1 MGP_C3HHeJ_G0026635.1 mouse_genomes_project 2 171598788 171606158 - protein_coding retained_intron MGP_C3HHeJ_T0017579.1 MGP_C3HHeJ_G0015202.1 mouse_genomes_project 2 89277783 89282558 - Gm13764 processed_transcript processed_transcript MGP_C3HHeJ_T0057541.1 MGP_C3HHeJ_G0026266.1 mouse_genomes_project 2 135098116 135127709 + MGP_C3HHeJ_P0057541 Mcm8 protein_coding protein_coding MGP_C3HHeJ_T0057542.1 MGP_C3HHeJ_G0026266.1 mouse_genomes_project 2 135098116 135127408 + MGP_C3HHeJ_P0057542 Mcm8 protein_coding protein_coding MGP_C3HHeJ_T0057543.1 MGP_C3HHeJ_G0026266.1 mouse_genomes_project 2 135098199 135100000 + Mcm8 protein_coding processed_transcript MGP_C3HHeJ_T0001013.1 MGP_C3HHeJ_G0000950.1 mouse_genomes_project 2 11391467 11394066 - TEC TEC MGP_C3HHeJ_T0058765.1 MGP_C3HHeJ_G0026557.1 mouse_genomes_project 2 167899826 167901094 - MGP_C3HHeJ_P0058765 Wfdc15a protein_coding protein_coding MGP_C3HHeJ_T0007344.1 MGP_C3HHeJ_G0006018.1 mouse_genomes_project 2 176494902 176497290 + Gm14275 lincRNA lincRNA MGP_C3HHeJ_T0013381.1 MGP_C3HHeJ_G0011485.1 mouse_genomes_project 2 46907029 46907281 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055819.1 MGP_C3HHeJ_G0025874.1 mouse_genomes_project 2 92014292 92020343 - MGP_C3HHeJ_P0055819 Zfp408 protein_coding protein_coding MGP_C3HHeJ_T0055820.1 MGP_C3HHeJ_G0025874.1 mouse_genomes_project 2 92014311 92020355 - MGP_C3HHeJ_P0055820 Zfp408 protein_coding protein_coding MGP_C3HHeJ_T0055821.1 MGP_C3HHeJ_G0025874.1 mouse_genomes_project 2 92016901 92018859 - Zfp408 protein_coding retained_intron MGP_C3HHeJ_T0055822.1 MGP_C3HHeJ_G0025874.1 mouse_genomes_project 2 92018291 92020323 - MGP_C3HHeJ_P0055822 Zfp408 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055823.1 MGP_C3HHeJ_G0025874.1 mouse_genomes_project 2 92018639 92020307 - Zfp408 protein_coding processed_transcript MGP_C3HHeJ_T0055824.1 MGP_C3HHeJ_G0025874.1 mouse_genomes_project 2 92019499 92020324 - Zfp408 protein_coding processed_transcript MGP_C3HHeJ_T0056858.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122994704 122997031 + MGP_C3HHeJ_P0056858 Ckmt1 protein_coding protein_coding MGP_C3HHeJ_T0056859.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122994766 123000705 + MGP_C3HHeJ_P0056859 Ckmt1 protein_coding protein_coding MGP_C3HHeJ_T0056860.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122994830 122996768 + MGP_C3HHeJ_P0056860 Ckmt1 protein_coding protein_coding MGP_C3HHeJ_T0056861.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122994897 122997959 + MGP_C3HHeJ_P0056861 Ckmt1 protein_coding protein_coding MGP_C3HHeJ_T0056862.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122995602 123000705 + MGP_C3HHeJ_P0056862 Ckmt1 protein_coding protein_coding MGP_C3HHeJ_T0056863.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122995648 122997956 + MGP_C3HHeJ_P0056863 Ckmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056864.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122995651 122997352 + Ckmt1 protein_coding retained_intron MGP_C3HHeJ_T0056865.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122995658 122997598 + MGP_C3HHeJ_P0056865 Ckmt1 protein_coding protein_coding MGP_C3HHeJ_T0056866.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122995836 122997010 + MGP_C3HHeJ_P0056866 Ckmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056867.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122999889 123000704 + Ckmt1 protein_coding retained_intron MGP_C3HHeJ_T0055520.1 MGP_C3HHeJ_G0025758.1 mouse_genomes_project 2 87959143 87960194 + MGP_C3HHeJ_P0055520 Olfr1151 protein_coding protein_coding MGP_C3HHeJ_T0010409.1 MGP_C3HHeJ_G0008542.1 mouse_genomes_project 2 184951114 184951218 + Mir133a-2 miRNA miRNA MGP_C3HHeJ_T0013672.1 MGP_C3HHeJ_G0011776.1 mouse_genomes_project 2 155528469 155528777 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013673.1 MGP_C3HHeJ_G0011777.1 mouse_genomes_project 2 155540086 155540569 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057961.1 MGP_C3HHeJ_G0026378.1 mouse_genomes_project 2 155483846 155513752 + MGP_C3HHeJ_P0057961 6820408C15Rik protein_coding protein_coding MGP_C3HHeJ_T0057962.1 MGP_C3HHeJ_G0026378.1 mouse_genomes_project 2 155496400 155513751 + MGP_C3HHeJ_P0057962 6820408C15Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057963.1 MGP_C3HHeJ_G0026378.1 mouse_genomes_project 2 155496427 155509065 + MGP_C3HHeJ_P0057963 6820408C15Rik protein_coding protein_coding MGP_C3HHeJ_T0055948.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93884857 93929643 - MGP_C3HHeJ_P0055948 Cd82 protein_coding protein_coding MGP_C3HHeJ_T0055949.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93884857 93929734 - MGP_C3HHeJ_P0055949 Cd82 protein_coding protein_coding MGP_C3HHeJ_T0055950.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93884862 93930178 - MGP_C3HHeJ_P0055950 Cd82 protein_coding protein_coding MGP_C3HHeJ_T0055951.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93884900 93886033 - Cd82 protein_coding processed_transcript MGP_C3HHeJ_T0055952.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93885575 93919916 - MGP_C3HHeJ_P0055952 Cd82 protein_coding protein_coding MGP_C3HHeJ_T0055953.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93886402 93929618 - MGP_C3HHeJ_P0055953 Cd82 protein_coding protein_coding MGP_C3HHeJ_T0055954.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93887572 93919920 - MGP_C3HHeJ_P0055954 Cd82 protein_coding protein_coding MGP_C3HHeJ_T0055955.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93887572 93929144 - MGP_C3HHeJ_P0055955 Cd82 protein_coding protein_coding MGP_C3HHeJ_T0055956.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93896299 93930372 - MGP_C3HHeJ_P0055956 Cd82 protein_coding protein_coding MGP_C3HHeJ_T0055957.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93899623 93929675 - Cd82 protein_coding processed_transcript MGP_C3HHeJ_T0055958.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93903523 93930144 - MGP_C3HHeJ_P0055958 Cd82 protein_coding protein_coding MGP_C3HHeJ_T0059179.1 MGP_C3HHeJ_G0026657.1 mouse_genomes_project 2 176214331 176221562 - MGP_C3HHeJ_P0059179 Cbln4 protein_coding protein_coding MGP_C3HHeJ_T0010387.1 MGP_C3HHeJ_G0008520.1 mouse_genomes_project 2 160980459 160980546 - Gm23134 miRNA miRNA MGP_C3HHeJ_T0054445.1 MGP_C3HHeJ_G0025464.1 mouse_genomes_project 2 50828474 50882707 + MGP_C3HHeJ_P0054445 Rif1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0054446.1 MGP_C3HHeJ_G0025464.1 mouse_genomes_project 2 50828526 50878355 + MGP_C3HHeJ_P0054446 Rif1 protein_coding protein_coding MGP_C3HHeJ_T0054447.1 MGP_C3HHeJ_G0025464.1 mouse_genomes_project 2 50828531 50878357 + MGP_C3HHeJ_P0054447 Rif1 protein_coding protein_coding MGP_C3HHeJ_T0054448.1 MGP_C3HHeJ_G0025464.1 mouse_genomes_project 2 50828761 50831896 + Rif1 protein_coding processed_transcript MGP_C3HHeJ_T0054449.1 MGP_C3HHeJ_G0025464.1 mouse_genomes_project 2 50845226 50863088 + Rif1 protein_coding processed_transcript MGP_C3HHeJ_T0054450.1 MGP_C3HHeJ_G0025464.1 mouse_genomes_project 2 50848803 50854049 + Rif1 protein_coding processed_transcript MGP_C3HHeJ_T0054451.1 MGP_C3HHeJ_G0025464.1 mouse_genomes_project 2 50867009 50878029 + Rif1 protein_coding processed_transcript MGP_C3HHeJ_T0054452.1 MGP_C3HHeJ_G0025464.1 mouse_genomes_project 2 50867486 50878082 + Rif1 protein_coding processed_transcript MGP_C3HHeJ_T0054453.1 MGP_C3HHeJ_G0025464.1 mouse_genomes_project 2 50868158 50878355 + Rif1 protein_coding processed_transcript MGP_C3HHeJ_T0101908.1 MGP_C3HHeJ_G0039873.1 mouse_genomes_project 2 87924495 87925432 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0056012.1 MGP_C3HHeJ_G0025906.1 mouse_genomes_project 2 94786575 94895301 - MGP_C3HHeJ_P0056012 Ttc17 protein_coding protein_coding MGP_C3HHeJ_T0056013.1 MGP_C3HHeJ_G0025906.1 mouse_genomes_project 2 94786577 94895315 - MGP_C3HHeJ_P0056013 Ttc17 protein_coding protein_coding MGP_C3HHeJ_T0056014.1 MGP_C3HHeJ_G0025906.1 mouse_genomes_project 2 94813427 94895324 - MGP_C3HHeJ_P0056014 Ttc17 protein_coding protein_coding MGP_C3HHeJ_T0056015.1 MGP_C3HHeJ_G0025906.1 mouse_genomes_project 2 94840405 94849638 - Ttc17 protein_coding processed_transcript MGP_C3HHeJ_T0056016.1 MGP_C3HHeJ_G0025906.1 mouse_genomes_project 2 94866431 94893637 - Ttc17 protein_coding processed_transcript MGP_C3HHeJ_T0053160.1 MGP_C3HHeJ_G0025241.1 mouse_genomes_project 2 24773159 24781351 - Slc2a6 protein_coding processed_transcript MGP_C3HHeJ_T0053161.1 MGP_C3HHeJ_G0025241.1 mouse_genomes_project 2 24773159 24781375 - Slc2a6 protein_coding processed_transcript MGP_C3HHeJ_T0053162.1 MGP_C3HHeJ_G0025241.1 mouse_genomes_project 2 24773159 24781338 - MGP_C3HHeJ_P0053162 Slc2a6 protein_coding protein_coding MGP_C3HHeJ_T0053163.1 MGP_C3HHeJ_G0025241.1 mouse_genomes_project 2 24773159 24781427 - MGP_C3HHeJ_P0053163 Slc2a6 protein_coding protein_coding MGP_C3HHeJ_T0053164.1 MGP_C3HHeJ_G0025241.1 mouse_genomes_project 2 24777496 24779420 - Slc2a6 protein_coding processed_transcript MGP_C3HHeJ_T0053165.1 MGP_C3HHeJ_G0025241.1 mouse_genomes_project 2 24779516 24781420 - MGP_C3HHeJ_P0053165 Slc2a6 protein_coding protein_coding MGP_C3HHeJ_T0007171.1 MGP_C3HHeJ_G0005876.1 mouse_genomes_project 2 84249312 84274053 - Gm13710 lincRNA lincRNA MGP_C3HHeJ_T0055547.1 MGP_C3HHeJ_G0025783.1 mouse_genomes_project 2 88663098 88664038 + MGP_C3HHeJ_P0055547 protein_coding protein_coding MGP_C3HHeJ_T0007039.1 MGP_C3HHeJ_G0005771.1 mouse_genomes_project 2 910077 913393 - Gm13191 lincRNA lincRNA MGP_C3HHeJ_T0057035.1 MGP_C3HHeJ_G0026151.1 mouse_genomes_project 2 127641303 127642990 + MGP_C3HHeJ_P0057035 Eid1 protein_coding protein_coding MGP_C3HHeJ_T0007119.1 MGP_C3HHeJ_G0005833.1 mouse_genomes_project 2 50135441 50154683 - 1700057H21Rik lincRNA lincRNA MGP_C3HHeJ_T0007120.1 MGP_C3HHeJ_G0005833.1 mouse_genomes_project 2 50135507 50153836 - 1700057H21Rik lincRNA lincRNA MGP_C3HHeJ_T0055769.1 MGP_C3HHeJ_G0025867.1 mouse_genomes_project 2 91555331 91582409 - Ddb2 protein_coding processed_transcript MGP_C3HHeJ_T0055770.1 MGP_C3HHeJ_G0025867.1 mouse_genomes_project 2 91555347 91583823 - Ddb2 protein_coding processed_transcript MGP_C3HHeJ_T0055771.1 MGP_C3HHeJ_G0025867.1 mouse_genomes_project 2 91555362 91583801 - MGP_C3HHeJ_P0055771 Ddb2 protein_coding protein_coding MGP_C3HHeJ_T0055772.1 MGP_C3HHeJ_G0025867.1 mouse_genomes_project 2 91555380 91583876 - Ddb2 protein_coding processed_transcript MGP_C3HHeJ_T0055773.1 MGP_C3HHeJ_G0025867.1 mouse_genomes_project 2 91555615 91583898 - MGP_C3HHeJ_P0055773 Ddb2 protein_coding protein_coding MGP_C3HHeJ_T0004093.1 MGP_C3HHeJ_G0003613.1 mouse_genomes_project 2 168942419 168946972 + Gm14397 antisense antisense MGP_C3HHeJ_T0100438.1 MGP_C3HHeJ_G0038632.1 mouse_genomes_project 2 24659064 24659138 + Gm22879 snoRNA snoRNA MGP_C3HHeJ_T0059180.1 MGP_C3HHeJ_G0026658.1 mouse_genomes_project 2 176454875 176457494 + MGP_C3HHeJ_P0059180 Mc3r protein_coding protein_coding MGP_C3HHeJ_T0057135.1 MGP_C3HHeJ_G0026172.1 mouse_genomes_project 2 129320790 129327652 - MGP_C3HHeJ_P0057135 Ciao1 protein_coding protein_coding MGP_C3HHeJ_T0057136.1 MGP_C3HHeJ_G0026172.1 mouse_genomes_project 2 129322470 129327456 - MGP_C3HHeJ_P0057136 Ciao1 protein_coding protein_coding MGP_C3HHeJ_T0057137.1 MGP_C3HHeJ_G0026172.1 mouse_genomes_project 2 129322725 129325882 - Ciao1 protein_coding retained_intron MGP_C3HHeJ_T0057138.1 MGP_C3HHeJ_G0026172.1 mouse_genomes_project 2 129322852 129327456 - MGP_C3HHeJ_P0057138 Ciao1 protein_coding protein_coding MGP_C3HHeJ_T0057139.1 MGP_C3HHeJ_G0026172.1 mouse_genomes_project 2 129325691 129327456 - MGP_C3HHeJ_P0057139 Ciao1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100476.1 MGP_C3HHeJ_G0038670.1 mouse_genomes_project 2 109004999 109005130 - Gm23749 snoRNA snoRNA MGP_C3HHeJ_T0058634.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164299786 164330978 + MGP_C3HHeJ_P0058634 Plcg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058635.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164299796 164344429 + MGP_C3HHeJ_P0058635 Plcg1 protein_coding protein_coding MGP_C3HHeJ_T0058636.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164300185 164316364 + MGP_C3HHeJ_P0058636 Plcg1 protein_coding protein_coding MGP_C3HHeJ_T0058637.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164300219 164331762 + MGP_C3HHeJ_P0058637 Plcg1 protein_coding protein_coding MGP_C3HHeJ_T0058638.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164309462 164330982 + Plcg1 protein_coding processed_transcript MGP_C3HHeJ_T0058640.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164320962 164330631 + Plcg1 protein_coding retained_intron MGP_C3HHeJ_T0058641.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164321027 164327383 + Plcg1 protein_coding retained_intron MGP_C3HHeJ_T0058642.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164322542 164323340 + Plcg1 protein_coding retained_intron MGP_C3HHeJ_T0058643.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164323022 164323645 + Plcg1 protein_coding retained_intron MGP_C3HHeJ_T0058644.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164323047 164327923 + Plcg1 protein_coding processed_transcript MGP_C3HHeJ_T0058645.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164323381 164325623 + Plcg1 protein_coding retained_intron MGP_C3HHeJ_T0058646.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164328593 164330693 + MGP_C3HHeJ_P0058646 Plcg1 protein_coding protein_coding MGP_C3HHeJ_T0007188.1 MGP_C3HHeJ_G0005889.1 mouse_genomes_project 2 95878056 95881162 + Gm13794 lincRNA lincRNA MGP_C3HHeJ_T0054793.1 MGP_C3HHeJ_G0025525.1 mouse_genomes_project 2 68140772 68400190 + MGP_C3HHeJ_P0054793 Cers6 protein_coding protein_coding MGP_C3HHeJ_T0054794.1 MGP_C3HHeJ_G0025525.1 mouse_genomes_project 2 68140773 68142056 + Cers6 protein_coding retained_intron MGP_C3HHeJ_T0054795.1 MGP_C3HHeJ_G0025525.1 mouse_genomes_project 2 68140781 68356286 + Cers6 protein_coding retained_intron MGP_C3HHeJ_T0054796.1 MGP_C3HHeJ_G0025525.1 mouse_genomes_project 2 68140801 68216592 + Cers6 protein_coding retained_intron MGP_C3HHeJ_T0054797.1 MGP_C3HHeJ_G0025525.1 mouse_genomes_project 2 68140917 68394500 + MGP_C3HHeJ_P0054797 Cers6 protein_coding protein_coding MGP_C3HHeJ_T0054798.1 MGP_C3HHeJ_G0025525.1 mouse_genomes_project 2 68228823 68334902 + Cers6 protein_coding retained_intron MGP_C3HHeJ_T0054799.1 MGP_C3HHeJ_G0025525.1 mouse_genomes_project 2 68241474 68335258 + Cers6 protein_coding retained_intron MGP_C3HHeJ_T0056363.1 MGP_C3HHeJ_G0026011.1 mouse_genomes_project 2 113706356 113707955 - MGP_C3HHeJ_P0056363 Chrm5 protein_coding protein_coding MGP_C3HHeJ_T0017684.1 MGP_C3HHeJ_G0015248.1 mouse_genomes_project 2 162089487 162104923 - Gm14204 processed_transcript processed_transcript MGP_C3HHeJ_T0017685.1 MGP_C3HHeJ_G0015248.1 mouse_genomes_project 2 162092184 162104987 - Gm14204 processed_transcript processed_transcript MGP_C3HHeJ_T0017686.1 MGP_C3HHeJ_G0015248.1 mouse_genomes_project 2 162097017 162104870 - Gm14204 processed_transcript processed_transcript MGP_C3HHeJ_T0017687.1 MGP_C3HHeJ_G0015248.1 mouse_genomes_project 2 162097156 162104854 - Gm14204 processed_transcript processed_transcript MGP_C3HHeJ_T0054212.1 MGP_C3HHeJ_G0025428.1 mouse_genomes_project 2 35722292 35733236 - MGP_C3HHeJ_P0054212 Zbtb26 protein_coding protein_coding MGP_C3HHeJ_T0054213.1 MGP_C3HHeJ_G0025428.1 mouse_genomes_project 2 35725142 35733235 - MGP_C3HHeJ_P0054213 Zbtb26 protein_coding protein_coding MGP_C3HHeJ_T0054214.1 MGP_C3HHeJ_G0025428.1 mouse_genomes_project 2 35728593 35733250 - Zbtb26 protein_coding processed_transcript MGP_C3HHeJ_T0058993.1 MGP_C3HHeJ_G0026618.1 mouse_genomes_project 2 169823198 169903825 + MGP_C3HHeJ_P0058993 Ncoa3 protein_coding protein_coding MGP_C3HHeJ_T0058994.1 MGP_C3HHeJ_G0026618.1 mouse_genomes_project 2 169823199 169906297 + MGP_C3HHeJ_P0058994 Ncoa3 protein_coding protein_coding MGP_C3HHeJ_T0058995.1 MGP_C3HHeJ_G0026618.1 mouse_genomes_project 2 169880302 169884762 + Ncoa3 protein_coding processed_transcript MGP_C3HHeJ_T0058996.1 MGP_C3HHeJ_G0026618.1 mouse_genomes_project 2 169893206 169898569 + Ncoa3 protein_coding retained_intron MGP_C3HHeJ_T0058997.1 MGP_C3HHeJ_G0026618.1 mouse_genomes_project 2 169899809 169902558 + Ncoa3 protein_coding retained_intron MGP_C3HHeJ_T0001015.1 MGP_C3HHeJ_G0000952.1 mouse_genomes_project 2 11539429 11539570 - TEC TEC MGP_C3HHeJ_T0058762.1 MGP_C3HHeJ_G0026555.1 mouse_genomes_project 2 167877284 167883708 - MGP_C3HHeJ_P0058762 Wfdc5 protein_coding protein_coding MGP_C3HHeJ_T0058763.1 MGP_C3HHeJ_G0026555.1 mouse_genomes_project 2 167878424 167883564 - MGP_C3HHeJ_P0058763 Wfdc5 protein_coding protein_coding MGP_C3HHeJ_T0007306.1 MGP_C3HHeJ_G0005987.1 mouse_genomes_project 2 170056489 170057887 - Gm11467 lincRNA lincRNA MGP_C3HHeJ_T0057612.1 MGP_C3HHeJ_G0026281.1 mouse_genomes_project 2 139494599 139531210 - MGP_C3HHeJ_P0057612 Jag1 protein_coding protein_coding MGP_C3HHeJ_T0057613.1 MGP_C3HHeJ_G0026281.1 mouse_genomes_project 2 139495906 139498964 - Jag1 protein_coding retained_intron MGP_C3HHeJ_T0100451.1 MGP_C3HHeJ_G0038645.1 mouse_genomes_project 2 44876440 44876563 + Gm23072 snoRNA snoRNA MGP_C3HHeJ_T0055554.1 MGP_C3HHeJ_G0025790.1 mouse_genomes_project 2 88884345 88885278 - MGP_C3HHeJ_P0055554 Olfr1199 protein_coding protein_coding MGP_C3HHeJ_T0007290.1 MGP_C3HHeJ_G0005971.1 mouse_genomes_project 2 161828247 161828379 - Gm23925 lincRNA lincRNA MGP_C3HHeJ_T0007346.1 MGP_C3HHeJ_G0006020.1 mouse_genomes_project 2 179190448 179201960 - Gm14618 lincRNA lincRNA MGP_C3HHeJ_T0056656.1 MGP_C3HHeJ_G0026081.1 mouse_genomes_project 2 121746584 121772055 - Pla2g4e protein_coding retained_intron MGP_C3HHeJ_T0056657.1 MGP_C3HHeJ_G0026081.1 mouse_genomes_project 2 121746584 121824614 - MGP_C3HHeJ_P0056657 Pla2g4e protein_coding protein_coding MGP_C3HHeJ_T0056658.1 MGP_C3HHeJ_G0026081.1 mouse_genomes_project 2 121752323 121824367 - Pla2g4e protein_coding retained_intron MGP_C3HHeJ_T0056659.1 MGP_C3HHeJ_G0026081.1 mouse_genomes_project 2 121770229 121824393 - Pla2g4e protein_coding processed_transcript MGP_C3HHeJ_T0055288.1 MGP_C3HHeJ_G0025626.1 mouse_genomes_project 2 83712239 83731869 - MGP_C3HHeJ_P0055288 Zswim2 protein_coding protein_coding MGP_C3HHeJ_T0055289.1 MGP_C3HHeJ_G0025626.1 mouse_genomes_project 2 83713929 83731871 - MGP_C3HHeJ_P0055289 Zswim2 protein_coding protein_coding MGP_C3HHeJ_T0055290.1 MGP_C3HHeJ_G0025626.1 mouse_genomes_project 2 83720149 83720590 - Zswim2 protein_coding processed_transcript MGP_C3HHeJ_T0004100.1 MGP_C3HHeJ_G0003620.1 mouse_genomes_project 2 174466404 174490313 + Bcas1os2 antisense antisense MGP_C3HHeJ_T0055538.1 MGP_C3HHeJ_G0025775.1 mouse_genomes_project 2 88494596 88495568 + MGP_C3HHeJ_P0055538 Olfr1178 protein_coding protein_coding MGP_C3HHeJ_T0099175.1 MGP_C3HHeJ_G0037369.1 mouse_genomes_project 2 8318852 8318985 - Gm26478 snRNA snRNA MGP_C3HHeJ_T0007096.1 MGP_C3HHeJ_G0005814.1 mouse_genomes_project 2 32194350 32284731 - C230014O12Rik lincRNA lincRNA MGP_C3HHeJ_T0007098.1 MGP_C3HHeJ_G0005814.1 mouse_genomes_project 2 32277045 32284737 - C230014O12Rik lincRNA lincRNA MGP_C3HHeJ_T0056958.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124075823 124093945 - MGP_C3HHeJ_P0056958 protein_coding protein_coding MGP_C3HHeJ_T0056959.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124075824 124096038 - MGP_C3HHeJ_P0056959 protein_coding protein_coding MGP_C3HHeJ_T0056960.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124076059 124095952 - MGP_C3HHeJ_P0056960 protein_coding protein_coding MGP_C3HHeJ_T0056961.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124076059 124096282 - MGP_C3HHeJ_P0056961 protein_coding protein_coding MGP_C3HHeJ_T0056962.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124076059 124086570 - MGP_C3HHeJ_P0056962 protein_coding protein_coding MGP_C3HHeJ_T0056963.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124076130 124085221 - MGP_C3HHeJ_P0056963 protein_coding protein_coding MGP_C3HHeJ_T0056964.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124076130 124085247 - MGP_C3HHeJ_P0056964 protein_coding protein_coding MGP_C3HHeJ_T0056965.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124076284 124096252 - MGP_C3HHeJ_P0056965 protein_coding protein_coding MGP_C3HHeJ_T0056966.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124076319 124084201 - MGP_C3HHeJ_P0056966 protein_coding protein_coding MGP_C3HHeJ_T0056967.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124076435 124081103 - protein_coding retained_intron MGP_C3HHeJ_T0057778.1 MGP_C3HHeJ_G0026319.1 mouse_genomes_project 2 149653628 149771470 + MGP_C3HHeJ_P0057778 Kiz protein_coding protein_coding MGP_C3HHeJ_T0057779.1 MGP_C3HHeJ_G0026319.1 mouse_genomes_project 2 149653673 149688113 + MGP_C3HHeJ_P0057779 Kiz protein_coding protein_coding MGP_C3HHeJ_T0057780.1 MGP_C3HHeJ_G0026319.1 mouse_genomes_project 2 149753149 149771465 + Kiz protein_coding retained_intron MGP_C3HHeJ_T0001023.1 MGP_C3HHeJ_G0000960.1 mouse_genomes_project 2 12463570 12466331 + TEC TEC MGP_C3HHeJ_T0054847.1 MGP_C3HHeJ_G0025536.1 mouse_genomes_project 2 69104596 69139590 - MGP_C3HHeJ_P0054847 Ccdc173 protein_coding protein_coding MGP_C3HHeJ_T0054848.1 MGP_C3HHeJ_G0025536.1 mouse_genomes_project 2 69129505 69130563 - Ccdc173 protein_coding processed_transcript MGP_C3HHeJ_T0001038.1 MGP_C3HHeJ_G0000975.1 mouse_genomes_project 2 36320837 36324787 - TEC TEC MGP_C3HHeJ_T0055728.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91521696 - MGP_C3HHeJ_P0055728 Madd protein_coding protein_coding MGP_C3HHeJ_T0055729.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91526199 - MGP_C3HHeJ_P0055729 Madd protein_coding protein_coding MGP_C3HHeJ_T0055730.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91526199 - MGP_C3HHeJ_P0055730 Madd protein_coding protein_coding MGP_C3HHeJ_T0055731.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91526199 - MGP_C3HHeJ_P0055731 Madd protein_coding protein_coding MGP_C3HHeJ_T0055732.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91521698 - MGP_C3HHeJ_P0055732 Madd protein_coding protein_coding MGP_C3HHeJ_T0055733.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91525227 - MGP_C3HHeJ_P0055733 Madd protein_coding protein_coding MGP_C3HHeJ_T0055734.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91521702 - MGP_C3HHeJ_P0055734 Madd protein_coding protein_coding MGP_C3HHeJ_T0055735.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91526199 - MGP_C3HHeJ_P0055735 Madd protein_coding protein_coding MGP_C3HHeJ_T0055736.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91521707 - MGP_C3HHeJ_P0055736 Madd protein_coding protein_coding MGP_C3HHeJ_T0055737.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91525268 - MGP_C3HHeJ_P0055737 Madd protein_coding protein_coding MGP_C3HHeJ_T0055738.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91526199 - MGP_C3HHeJ_P0055738 Madd protein_coding protein_coding MGP_C3HHeJ_T0055739.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91525267 - MGP_C3HHeJ_P0055739 Madd protein_coding protein_coding MGP_C3HHeJ_T0055740.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478524 91526199 - Madd protein_coding processed_transcript MGP_C3HHeJ_T0055741.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478524 91526199 - Madd protein_coding processed_transcript MGP_C3HHeJ_T0055742.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478524 91526199 - Madd protein_coding processed_transcript MGP_C3HHeJ_T0055743.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478524 91526199 - Madd protein_coding processed_transcript MGP_C3HHeJ_T0055744.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478524 91526199 - Madd protein_coding processed_transcript MGP_C3HHeJ_T0055745.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478524 91526199 - MGP_C3HHeJ_P0055745 Madd protein_coding protein_coding MGP_C3HHeJ_T0055746.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91479513 91480420 - Madd protein_coding retained_intron MGP_C3HHeJ_T0055747.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91484191 91497437 - Madd protein_coding retained_intron MGP_C3HHeJ_T0055748.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91484420 91494977 - Madd protein_coding retained_intron MGP_C3HHeJ_T0055749.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91494632 91497281 - Madd protein_coding retained_intron MGP_C3HHeJ_T0055750.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91498043 91502843 - Madd protein_coding retained_intron MGP_C3HHeJ_T0055751.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91503531 91525405 - Madd protein_coding retained_intron MGP_C3HHeJ_T0055752.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91503878 91525426 - MGP_C3HHeJ_P0055752 Madd protein_coding protein_coding MGP_C3HHeJ_T0055753.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91510301 91518206 - MGP_C3HHeJ_P0055753 Madd protein_coding protein_coding MGP_C3HHeJ_T0055754.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91520017 91526218 - Madd protein_coding retained_intron MGP_C3HHeJ_T0055755.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91520829 91525418 - Madd protein_coding processed_transcript MGP_C3HHeJ_T0053239.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26335514 26365314 + MGP_C3HHeJ_P0053239 Ralgds protein_coding protein_coding MGP_C3HHeJ_T0053240.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26335715 26377526 + MGP_C3HHeJ_P0053240 Ralgds protein_coding protein_coding MGP_C3HHeJ_T0053241.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26355746 26377511 + MGP_C3HHeJ_P0053241 Ralgds protein_coding protein_coding MGP_C3HHeJ_T0053242.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26355933 26377081 + MGP_C3HHeJ_P0053242 Ralgds protein_coding protein_coding MGP_C3HHeJ_T0053243.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26355940 26377515 + Ralgds protein_coding retained_intron MGP_C3HHeJ_T0053244.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26355942 26377523 + MGP_C3HHeJ_P0053244 Ralgds protein_coding unknown_likely_coding MGP_C3HHeJ_T0053245.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26363089 26365266 + Ralgds protein_coding retained_intron MGP_C3HHeJ_T0053246.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26364696 26369521 + MGP_C3HHeJ_P0053246 Ralgds protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053247.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26369737 26371665 + Ralgds protein_coding retained_intron MGP_C3HHeJ_T0053248.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26371994 26373421 + Ralgds protein_coding retained_intron MGP_C3HHeJ_T0053249.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26373502 26376770 + MGP_C3HHeJ_P0053249 Ralgds protein_coding protein_coding MGP_C3HHeJ_T0055591.1 MGP_C3HHeJ_G0025821.1 mouse_genomes_project 2 89568478 89569426 - MGP_C3HHeJ_P0055591 Olfr1238 protein_coding protein_coding MGP_C3HHeJ_T0013497.1 MGP_C3HHeJ_G0011601.1 mouse_genomes_project 2 87121491 87122026 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013611.1 MGP_C3HHeJ_G0011715.1 mouse_genomes_project 2 133196346 133196964 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056302.1 MGP_C3HHeJ_G0025967.1 mouse_genomes_project 2 111613264 111921888 - MGP_C3HHeJ_P0056302 Ano3 protein_coding protein_coding MGP_C3HHeJ_T0056303.1 MGP_C3HHeJ_G0025967.1 mouse_genomes_project 2 111646760 111921338 - Ano3 protein_coding retained_intron MGP_C3HHeJ_T0056304.1 MGP_C3HHeJ_G0025967.1 mouse_genomes_project 2 111670406 111721127 - MGP_C3HHeJ_P0056304 Ano3 protein_coding protein_coding MGP_C3HHeJ_T0007238.1 MGP_C3HHeJ_G0005929.1 mouse_genomes_project 2 127238895 127240185 - Gm14003 lincRNA lincRNA MGP_C3HHeJ_T0003965.1 MGP_C3HHeJ_G0003523.1 mouse_genomes_project 2 102728085 102755913 + Gm13919 antisense antisense MGP_C3HHeJ_T0003966.1 MGP_C3HHeJ_G0003523.1 mouse_genomes_project 2 102728093 102730722 + Gm13919 antisense antisense MGP_C3HHeJ_T0057829.1 MGP_C3HHeJ_G0026342.1 mouse_genomes_project 2 152714393 152715083 - MGP_C3HHeJ_P0057829 C530025M09Rik protein_coding protein_coding MGP_C3HHeJ_T0055480.1 MGP_C3HHeJ_G0025728.1 mouse_genomes_project 2 87224477 87242984 + MGP_C3HHeJ_P0055480 Olfr1113 protein_coding protein_coding MGP_C3HHeJ_T0013579.1 MGP_C3HHeJ_G0011683.1 mouse_genomes_project 2 113621322 113621622 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055368.1 MGP_C3HHeJ_G0025646.1 mouse_genomes_project 2 84684123 84685360 + MGP_C3HHeJ_P0055368 Slc43a3 protein_coding protein_coding MGP_C3HHeJ_T0055369.1 MGP_C3HHeJ_G0025646.1 mouse_genomes_project 2 84684161 84685859 + MGP_C3HHeJ_P0055369 Slc43a3 protein_coding protein_coding MGP_C3HHeJ_T0055370.1 MGP_C3HHeJ_G0025646.1 mouse_genomes_project 2 84684190 84692099 + MGP_C3HHeJ_P0055370 Slc43a3 protein_coding protein_coding MGP_C3HHeJ_T0055371.1 MGP_C3HHeJ_G0025646.1 mouse_genomes_project 2 84684208 84705844 + MGP_C3HHeJ_P0055371 Slc43a3 protein_coding protein_coding MGP_C3HHeJ_T0055372.1 MGP_C3HHeJ_G0025646.1 mouse_genomes_project 2 84684233 84685207 + Slc43a3 protein_coding processed_transcript MGP_C3HHeJ_T0055373.1 MGP_C3HHeJ_G0025646.1 mouse_genomes_project 2 84684415 84695647 + Slc43a3 protein_coding retained_intron MGP_C3HHeJ_T0055537.1 MGP_C3HHeJ_G0025774.1 mouse_genomes_project 2 88448414 88449362 + MGP_C3HHeJ_P0055537 Olfr1176 protein_coding protein_coding MGP_C3HHeJ_T0059193.1 MGP_C3HHeJ_G0026664.1 mouse_genomes_project 2 176664420 176672683 - MGP_C3HHeJ_P0059193 Gcnt7 protein_coding protein_coding MGP_C3HHeJ_T0059194.1 MGP_C3HHeJ_G0026664.1 mouse_genomes_project 2 176664421 176668841 - MGP_C3HHeJ_P0059194 Gcnt7 protein_coding protein_coding MGP_C3HHeJ_T0100430.1 MGP_C3HHeJ_G0038624.1 mouse_genomes_project 2 17216777 17216909 + Gm24670 snoRNA snoRNA MGP_C3HHeJ_T0057174.1 MGP_C3HHeJ_G0026182.1 mouse_genomes_project 2 129662873 129675083 - MGP_C3HHeJ_P0057174 Zfp661 protein_coding protein_coding MGP_C3HHeJ_T0057175.1 MGP_C3HHeJ_G0026182.1 mouse_genomes_project 2 129663717 129672653 - MGP_C3HHeJ_P0057175 Zfp661 protein_coding protein_coding MGP_C3HHeJ_T0057176.1 MGP_C3HHeJ_G0026182.1 mouse_genomes_project 2 129663724 129672661 - MGP_C3HHeJ_P0057176 Zfp661 protein_coding protein_coding MGP_C3HHeJ_T0057177.1 MGP_C3HHeJ_G0026182.1 mouse_genomes_project 2 129665124 129669500 - MGP_C3HHeJ_P0057177 Zfp661 protein_coding protein_coding MGP_C3HHeJ_T0013730.1 MGP_C3HHeJ_G0011834.1 mouse_genomes_project 2 181687655 181688052 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011393.1 MGP_C3HHeJ_G0009526.1 mouse_genomes_project 2 18100837 18100926 + Gm27446 misc_RNA misc_RNA MGP_C3HHeJ_T0017610.1 MGP_C3HHeJ_G0015217.1 mouse_genomes_project 2 115283931 115340805 + A530058N18Rik processed_transcript antisense MGP_C3HHeJ_T0017611.1 MGP_C3HHeJ_G0015217.1 mouse_genomes_project 2 115283935 115332685 + A530058N18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017569.1 MGP_C3HHeJ_G0015193.1 mouse_genomes_project 2 75269218 75274494 + E030042O20Rik processed_transcript processed_transcript MGP_C3HHeJ_T0004070.1 MGP_C3HHeJ_G0003598.1 mouse_genomes_project 2 161514289 161538095 - 2010009K17Rik antisense antisense MGP_C3HHeJ_T0010267.1 MGP_C3HHeJ_G0008400.1 mouse_genomes_project 2 7699171 7699273 + Gm24342 miRNA miRNA MGP_C3HHeJ_T0013554.1 MGP_C3HHeJ_G0011658.1 mouse_genomes_project 2 105596240 105597423 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013487.1 MGP_C3HHeJ_G0011591.1 mouse_genomes_project 2 83220608 83221092 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017563.1 MGP_C3HHeJ_G0015188.1 mouse_genomes_project 2 69398896 69402391 + Gm13631 processed_transcript processed_transcript MGP_C3HHeJ_T0099212.1 MGP_C3HHeJ_G0037406.1 mouse_genomes_project 2 128099182 128099269 - Gm26496 snRNA snRNA MGP_C3HHeJ_T0010317.1 MGP_C3HHeJ_G0008450.1 mouse_genomes_project 2 30778685 30778750 + miRNA miRNA MGP_C3HHeJ_T0057198.1 MGP_C3HHeJ_G0026189.1 mouse_genomes_project 2 129919589 129960790 + Acoxl protein_coding processed_transcript MGP_C3HHeJ_T0057199.1 MGP_C3HHeJ_G0026189.1 mouse_genomes_project 2 129935217 130225622 + MGP_C3HHeJ_P0057199 Acoxl protein_coding protein_coding MGP_C3HHeJ_T0057200.1 MGP_C3HHeJ_G0026189.1 mouse_genomes_project 2 129997052 130225257 + MGP_C3HHeJ_P0057200 Acoxl protein_coding protein_coding MGP_C3HHeJ_T0007206.1 MGP_C3HHeJ_G0005904.1 mouse_genomes_project 2 109119084 109229111 - Gm13912 lincRNA lincRNA MGP_C3HHeJ_T0017557.1 MGP_C3HHeJ_G0015184.1 mouse_genomes_project 2 56114815 56117097 - A930012O16Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017558.1 MGP_C3HHeJ_G0015184.1 mouse_genomes_project 2 56114815 56117097 - A930012O16Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017692.1 MGP_C3HHeJ_G0015253.1 mouse_genomes_project 2 171101527 171106056 + 1110018N20Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017693.1 MGP_C3HHeJ_G0015253.1 mouse_genomes_project 2 171101737 171106322 + 1110018N20Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017694.1 MGP_C3HHeJ_G0015253.1 mouse_genomes_project 2 171102272 171106605 + 1110018N20Rik processed_transcript processed_transcript MGP_C3HHeJ_T0054030.1 MGP_C3HHeJ_G0025375.1 mouse_genomes_project 2 32985128 33009860 - MGP_C3HHeJ_P0054030 Rabepk protein_coding protein_coding MGP_C3HHeJ_T0054031.1 MGP_C3HHeJ_G0025375.1 mouse_genomes_project 2 32986458 33009710 - MGP_C3HHeJ_P0054031 Rabepk protein_coding protein_coding MGP_C3HHeJ_T0054032.1 MGP_C3HHeJ_G0025375.1 mouse_genomes_project 2 32986669 33003927 - MGP_C3HHeJ_P0054032 Rabepk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054033.1 MGP_C3HHeJ_G0025375.1 mouse_genomes_project 2 32992641 33009956 - MGP_C3HHeJ_P0054033 Rabepk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054034.1 MGP_C3HHeJ_G0025375.1 mouse_genomes_project 2 32993033 33009993 - MGP_C3HHeJ_P0054034 Rabepk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054035.1 MGP_C3HHeJ_G0025375.1 mouse_genomes_project 2 32993505 33009846 - Rabepk protein_coding retained_intron MGP_C3HHeJ_T0052407.1 MGP_C3HHeJ_G0025104.1 mouse_genomes_project 2 15474821 15487349 - MGP_C3HHeJ_P0052407 A930004D18Rik protein_coding protein_coding MGP_C3HHeJ_T0052408.1 MGP_C3HHeJ_G0025104.1 mouse_genomes_project 2 15477554 15478389 - A930004D18Rik protein_coding processed_transcript MGP_C3HHeJ_T0052409.1 MGP_C3HHeJ_G0025104.1 mouse_genomes_project 2 15477602 15478500 - A930004D18Rik protein_coding processed_transcript MGP_C3HHeJ_T0007215.1 MGP_C3HHeJ_G0005913.1 mouse_genomes_project 2 116839848 116858484 - 3110099E03Rik lincRNA lincRNA MGP_C3HHeJ_T0007216.1 MGP_C3HHeJ_G0005913.1 mouse_genomes_project 2 116841366 116874581 - 3110099E03Rik lincRNA lincRNA MGP_C3HHeJ_T0007217.1 MGP_C3HHeJ_G0005913.1 mouse_genomes_project 2 116842073 116858490 - 3110099E03Rik lincRNA lincRNA MGP_C3HHeJ_T0007235.1 MGP_C3HHeJ_G0005926.1 mouse_genomes_project 2 126048942 126059124 - 4930517E11Rik lincRNA lincRNA MGP_C3HHeJ_T0055443.1 MGP_C3HHeJ_G0025693.1 mouse_genomes_project 2 86179014 86179953 + MGP_C3HHeJ_P0055443 Olfr1052 protein_coding protein_coding MGP_C3HHeJ_T0052119.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2906749 2930964 - MGP_C3HHeJ_P0052119 Sec61a2 protein_coding protein_coding MGP_C3HHeJ_T0052120.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2906791 2930866 - MGP_C3HHeJ_P0052120 Sec61a2 protein_coding protein_coding MGP_C3HHeJ_T0052121.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2907357 2912231 - MGP_C3HHeJ_P0052121 Sec61a2 protein_coding protein_coding MGP_C3HHeJ_T0052122.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2907755 2910559 - Sec61a2 protein_coding processed_transcript MGP_C3HHeJ_T0052123.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2909173 2910053 - Sec61a2 protein_coding processed_transcript MGP_C3HHeJ_T0052124.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2909560 2912795 - Sec61a2 protein_coding processed_transcript MGP_C3HHeJ_T0052125.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2912176 2913762 - Sec61a2 protein_coding processed_transcript MGP_C3HHeJ_T0052126.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2912244 2914143 - Sec61a2 protein_coding processed_transcript MGP_C3HHeJ_T0052127.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2913626 2930851 - MGP_C3HHeJ_P0052127 Sec61a2 protein_coding protein_coding MGP_C3HHeJ_T0052128.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2917619 2930866 - Sec61a2 protein_coding retained_intron MGP_C3HHeJ_T0057413.1 MGP_C3HHeJ_G0026240.1 mouse_genomes_project 2 133339759 133359834 + MGP_C3HHeJ_P0057413 Hspa12b protein_coding protein_coding MGP_C3HHeJ_T0057414.1 MGP_C3HHeJ_G0026240.1 mouse_genomes_project 2 133339921 133350857 + MGP_C3HHeJ_P0057414 Hspa12b protein_coding protein_coding MGP_C3HHeJ_T0057415.1 MGP_C3HHeJ_G0026240.1 mouse_genomes_project 2 133339973 133358740 + MGP_C3HHeJ_P0057415 Hspa12b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007100.1 MGP_C3HHeJ_G0005817.1 mouse_genomes_project 2 33746978 33749453 + Gm35202 lincRNA lincRNA MGP_C3HHeJ_T0010289.1 MGP_C3HHeJ_G0008422.1 mouse_genomes_project 2 14378551 14378661 - Gm24933 miRNA miRNA MGP_C3HHeJ_T0003837.1 MGP_C3HHeJ_G0003430.1 mouse_genomes_project 2 17155740 17158693 - Gm13348 antisense antisense MGP_C3HHeJ_T0054822.1 MGP_C3HHeJ_G0025532.1 mouse_genomes_project 2 68980967 69002348 + MGP_C3HHeJ_P0054822 Bbs5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054823.1 MGP_C3HHeJ_G0025532.1 mouse_genomes_project 2 68981004 69002601 + MGP_C3HHeJ_P0054823 Bbs5 protein_coding protein_coding MGP_C3HHeJ_T0054824.1 MGP_C3HHeJ_G0025532.1 mouse_genomes_project 2 68981012 69002601 + MGP_C3HHeJ_P0054824 Bbs5 protein_coding protein_coding MGP_C3HHeJ_T0054825.1 MGP_C3HHeJ_G0025532.1 mouse_genomes_project 2 68981026 68984550 + Bbs5 protein_coding retained_intron MGP_C3HHeJ_T0054826.1 MGP_C3HHeJ_G0025532.1 mouse_genomes_project 2 68981049 68989222 + Bbs5 protein_coding retained_intron MGP_C3HHeJ_T0054827.1 MGP_C3HHeJ_G0025532.1 mouse_genomes_project 2 68981059 68988064 + Bbs5 protein_coding retained_intron MGP_C3HHeJ_T0054828.1 MGP_C3HHeJ_G0025532.1 mouse_genomes_project 2 68990397 69000058 + Bbs5 protein_coding retained_intron MGP_C3HHeJ_T0054829.1 MGP_C3HHeJ_G0025532.1 mouse_genomes_project 2 68992252 69002601 + MGP_C3HHeJ_P0054829 Bbs5 protein_coding protein_coding MGP_C3HHeJ_T0003836.1 MGP_C3HHeJ_G0003429.1 mouse_genomes_project 2 16954008 16959096 - Ptf1aos antisense antisense MGP_C3HHeJ_T0013669.1 MGP_C3HHeJ_G0011773.1 mouse_genomes_project 2 153955996 153956779 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054147.1 MGP_C3HHeJ_G0025394.1 mouse_genomes_project 2 34351562 34373705 - MGP_C3HHeJ_P0054147 Lhx6 protein_coding protein_coding MGP_C3HHeJ_T0054148.1 MGP_C3HHeJ_G0025394.1 mouse_genomes_project 2 34351562 34373705 - MGP_C3HHeJ_P0054148 Lhx6 protein_coding protein_coding MGP_C3HHeJ_T0054149.1 MGP_C3HHeJ_G0025394.1 mouse_genomes_project 2 34351562 34375052 - MGP_C3HHeJ_P0054149 Lhx6 protein_coding protein_coding MGP_C3HHeJ_T0054150.1 MGP_C3HHeJ_G0025394.1 mouse_genomes_project 2 34351562 34374915 - MGP_C3HHeJ_P0054150 Lhx6 protein_coding protein_coding MGP_C3HHeJ_T0054151.1 MGP_C3HHeJ_G0025394.1 mouse_genomes_project 2 34351563 34375052 - MGP_C3HHeJ_P0054151 Lhx6 protein_coding protein_coding MGP_C3HHeJ_T0054152.1 MGP_C3HHeJ_G0025394.1 mouse_genomes_project 2 34353294 34363884 - MGP_C3HHeJ_P0054152 Lhx6 protein_coding protein_coding MGP_C3HHeJ_T0054153.1 MGP_C3HHeJ_G0025394.1 mouse_genomes_project 2 34353297 34374535 - MGP_C3HHeJ_P0054153 Lhx6 protein_coding protein_coding MGP_C3HHeJ_T0054154.1 MGP_C3HHeJ_G0025394.1 mouse_genomes_project 2 34363835 34373237 - Lhx6 protein_coding retained_intron MGP_C3HHeJ_T0054155.1 MGP_C3HHeJ_G0025394.1 mouse_genomes_project 2 34370941 34374899 - Lhx6 protein_coding processed_transcript MGP_C3HHeJ_T0007226.1 MGP_C3HHeJ_G0005919.1 mouse_genomes_project 2 119267279 119268807 - Gm28183 lincRNA lincRNA MGP_C3HHeJ_T0058860.1 MGP_C3HHeJ_G0026596.1 mouse_genomes_project 2 168591265 168595136 - MGP_C3HHeJ_P0058860 Neurl2 protein_coding protein_coding MGP_C3HHeJ_T0058407.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159515542 159571498 + MGP_C3HHeJ_P0058407 Phf20 protein_coding protein_coding MGP_C3HHeJ_T0058408.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159515718 159626396 + MGP_C3HHeJ_P0058408 Phf20 protein_coding protein_coding MGP_C3HHeJ_T0058409.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159515810 159630005 + Phf20 protein_coding processed_transcript MGP_C3HHeJ_T0058410.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159515830 159540715 + Phf20 protein_coding retained_intron MGP_C3HHeJ_T0058411.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159515832 159571700 + Phf20 protein_coding retained_intron MGP_C3HHeJ_T0058412.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159539680 159569013 + Phf20 protein_coding processed_transcript MGP_C3HHeJ_T0058413.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159580353 159591075 + Phf20 protein_coding processed_transcript MGP_C3HHeJ_T0058414.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159600446 159610258 + Phf20 protein_coding processed_transcript MGP_C3HHeJ_T0058415.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159611478 159616338 + Phf20 protein_coding retained_intron MGP_C3HHeJ_T0058416.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159613762 159616430 + Phf20 protein_coding processed_transcript MGP_C3HHeJ_T0058417.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159614139 159622071 + Phf20 protein_coding processed_transcript MGP_C3HHeJ_T0013633.1 MGP_C3HHeJ_G0011737.1 mouse_genomes_project 2 142671694 142672075 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055926.1 MGP_C3HHeJ_G0025890.1 mouse_genomes_project 2 92881281 92888665 - MGP_C3HHeJ_P0055926 Slc35c1 protein_coding protein_coding MGP_C3HHeJ_T0055927.1 MGP_C3HHeJ_G0025890.1 mouse_genomes_project 2 92881284 92889409 - MGP_C3HHeJ_P0055927 Slc35c1 protein_coding protein_coding MGP_C3HHeJ_T0055928.1 MGP_C3HHeJ_G0025890.1 mouse_genomes_project 2 92887556 92888580 - MGP_C3HHeJ_P0055928 Slc35c1 protein_coding protein_coding MGP_C3HHeJ_T0013428.1 MGP_C3HHeJ_G0011532.1 mouse_genomes_project 2 60712713 60713412 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099202.1 MGP_C3HHeJ_G0037396.1 mouse_genomes_project 2 84447652 84447753 + Gm27942 snRNA snRNA MGP_C3HHeJ_T0013280.1 MGP_C3HHeJ_G0011384.1 mouse_genomes_project 2 8179102 8179940 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017638.1 MGP_C3HHeJ_G0015227.1 mouse_genomes_project 2 127074041 127085706 - Gm14004 processed_transcript processed_transcript MGP_C3HHeJ_T0011406.1 MGP_C3HHeJ_G0009539.1 mouse_genomes_project 2 67759978 67760220 + Gm26321 misc_RNA misc_RNA MGP_C3HHeJ_T0101895.1 MGP_C3HHeJ_G0039860.1 mouse_genomes_project 2 85731526 85732868 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007104.1 MGP_C3HHeJ_G0005819.1 mouse_genomes_project 2 35378366 35379243 - Gm13434 lincRNA lincRNA MGP_C3HHeJ_T0003960.1 MGP_C3HHeJ_G0003519.1 mouse_genomes_project 2 84942865 84944611 + Gm13716 antisense antisense MGP_C3HHeJ_T0058259.1 MGP_C3HHeJ_G0026458.1 mouse_genomes_project 2 158993526 159021126 - MGP_C3HHeJ_P0058259 Edem2 protein_coding protein_coding MGP_C3HHeJ_T0058260.1 MGP_C3HHeJ_G0026458.1 mouse_genomes_project 2 158997572 159005201 - Edem2 protein_coding processed_transcript MGP_C3HHeJ_T0058261.1 MGP_C3HHeJ_G0026458.1 mouse_genomes_project 2 159000405 159002875 - Edem2 protein_coding retained_intron MGP_C3HHeJ_T0058262.1 MGP_C3HHeJ_G0026458.1 mouse_genomes_project 2 159000888 159008263 - Edem2 protein_coding retained_intron MGP_C3HHeJ_T0058166.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024324 158101539 + MGP_C3HHeJ_P0058166 Raly protein_coding protein_coding MGP_C3HHeJ_T0058167.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024334 158098013 + MGP_C3HHeJ_P0058167 Raly protein_coding protein_coding MGP_C3HHeJ_T0058168.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024338 158101555 + MGP_C3HHeJ_P0058168 Raly protein_coding protein_coding MGP_C3HHeJ_T0058169.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024346 158096113 + MGP_C3HHeJ_P0058169 Raly protein_coding protein_coding MGP_C3HHeJ_T0058170.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024361 158101538 + MGP_C3HHeJ_P0058170 Raly protein_coding protein_coding MGP_C3HHeJ_T0058171.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024385 158101555 + MGP_C3HHeJ_P0058171 Raly protein_coding protein_coding MGP_C3HHeJ_T0058172.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024580 158098226 + MGP_C3HHeJ_P0058172 Raly protein_coding protein_coding MGP_C3HHeJ_T0058173.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024582 158082648 + Raly protein_coding processed_transcript MGP_C3HHeJ_T0058174.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024597 158091541 + Raly protein_coding processed_transcript MGP_C3HHeJ_T0058176.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024941 158091654 + Raly protein_coding processed_transcript MGP_C3HHeJ_T0013445.1 MGP_C3HHeJ_G0011549.1 mouse_genomes_project 2 69149893 69150994 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013420.1 MGP_C3HHeJ_G0011524.1 mouse_genomes_project 2 58315893 58316689 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053289.1 MGP_C3HHeJ_G0025268.1 mouse_genomes_project 2 26746282 26754998 - MGP_C3HHeJ_P0053289 Barhl1 protein_coding protein_coding MGP_C3HHeJ_T0053290.1 MGP_C3HHeJ_G0025268.1 mouse_genomes_project 2 26746287 26751099 - Barhl1 protein_coding processed_transcript MGP_C3HHeJ_T0053291.1 MGP_C3HHeJ_G0025268.1 mouse_genomes_project 2 26747572 26755017 - MGP_C3HHeJ_P0053291 Barhl1 protein_coding protein_coding MGP_C3HHeJ_T0053292.1 MGP_C3HHeJ_G0025268.1 mouse_genomes_project 2 26747572 26755239 - MGP_C3HHeJ_P0053292 Barhl1 protein_coding protein_coding MGP_C3HHeJ_T0053293.1 MGP_C3HHeJ_G0025268.1 mouse_genomes_project 2 26748243 26754091 - Barhl1 protein_coding processed_transcript MGP_C3HHeJ_T0099188.1 MGP_C3HHeJ_G0037382.1 mouse_genomes_project 2 36799258 36799366 + Gm25081 snRNA snRNA MGP_C3HHeJ_T0055211.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79020081 79028185 - MGP_C3HHeJ_P0055211 Cerkl protein_coding protein_coding MGP_C3HHeJ_T0055212.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79021290 79122210 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0055213.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79022040 79023265 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0055214.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79022068 79122147 - MGP_C3HHeJ_P0055214 Cerkl protein_coding protein_coding MGP_C3HHeJ_T0055215.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79022113 79122147 - MGP_C3HHeJ_P0055215 Cerkl protein_coding unknown_likely_coding MGP_C3HHeJ_T0055216.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79022131 79122163 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0055217.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79022131 79122147 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0055218.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79022133 79122253 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0055219.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79028150 79148186 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0055220.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79033103 79061746 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0055221.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79044695 79061771 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0055222.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79078855 79082481 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0055223.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79080189 79084366 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0052033.1 MGP_C3HHeJ_G0025044.1 mouse_genomes_project 2 531021 531372 + MGP_C3HHeJ_P0052033 protein_coding protein_coding MGP_C3HHeJ_T0055419.1 MGP_C3HHeJ_G0025670.1 mouse_genomes_project 2 85615205 85616141 + MGP_C3HHeJ_P0055419 Olfr1018 protein_coding protein_coding MGP_C3HHeJ_T0054542.1 MGP_C3HHeJ_G0025485.1 mouse_genomes_project 2 57820237 57866646 + MGP_C3HHeJ_P0054542 Gm11099 protein_coding protein_coding MGP_C3HHeJ_T0013301.1 MGP_C3HHeJ_G0011405.1 mouse_genomes_project 2 15810681 15811092 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058843.1 MGP_C3HHeJ_G0026591.1 mouse_genomes_project 2 168542343 168548979 + MGP_C3HHeJ_P0058843 Snx21 protein_coding protein_coding MGP_C3HHeJ_T0058844.1 MGP_C3HHeJ_G0026591.1 mouse_genomes_project 2 168542511 168550302 + MGP_C3HHeJ_P0058844 Snx21 protein_coding protein_coding MGP_C3HHeJ_T0058845.1 MGP_C3HHeJ_G0026591.1 mouse_genomes_project 2 168542511 168549544 + MGP_C3HHeJ_P0058845 Snx21 protein_coding protein_coding MGP_C3HHeJ_T0058846.1 MGP_C3HHeJ_G0026591.1 mouse_genomes_project 2 168542537 168544133 + MGP_C3HHeJ_P0058846 Snx21 protein_coding protein_coding MGP_C3HHeJ_T0058847.1 MGP_C3HHeJ_G0026591.1 mouse_genomes_project 2 168543294 168549116 + MGP_C3HHeJ_P0058847 Snx21 protein_coding protein_coding MGP_C3HHeJ_T0058848.1 MGP_C3HHeJ_G0026591.1 mouse_genomes_project 2 168546902 168550308 + Snx21 protein_coding retained_intron MGP_C3HHeJ_T0058849.1 MGP_C3HHeJ_G0026591.1 mouse_genomes_project 2 168548143 168550300 + Snx21 protein_coding processed_transcript MGP_C3HHeJ_T0056977.1 MGP_C3HHeJ_G0026137.1 mouse_genomes_project 2 124515770 124539698 - MGP_C3HHeJ_P0056977 Slc30a4 protein_coding protein_coding MGP_C3HHeJ_T0056978.1 MGP_C3HHeJ_G0026137.1 mouse_genomes_project 2 124518798 124539722 - MGP_C3HHeJ_P0056978 Slc30a4 protein_coding protein_coding MGP_C3HHeJ_T0101520.1 MGP_C3HHeJ_G0039499.1 mouse_genomes_project 2 147181782 147190260 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101521.1 MGP_C3HHeJ_G0039499.1 mouse_genomes_project 2 147186860 147223292 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101522.1 MGP_C3HHeJ_G0039499.1 mouse_genomes_project 2 147186925 147189191 + unitary_pseudogene unitary_pseudogene MGP_C3HHeJ_T0101523.1 MGP_C3HHeJ_G0039499.1 mouse_genomes_project 2 147187641 147189198 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0052070.1 MGP_C3HHeJ_G0025049.1 mouse_genomes_project 2 1883812 1920301 + MGP_C3HHeJ_P0052070 Sephs1 protein_coding protein_coding MGP_C3HHeJ_T0052071.1 MGP_C3HHeJ_G0025049.1 mouse_genomes_project 2 1884483 1917881 + MGP_C3HHeJ_P0052071 Sephs1 protein_coding protein_coding MGP_C3HHeJ_T0052072.1 MGP_C3HHeJ_G0025049.1 mouse_genomes_project 2 1886295 1891540 + Sephs1 protein_coding processed_transcript MGP_C3HHeJ_T0052073.1 MGP_C3HHeJ_G0025049.1 mouse_genomes_project 2 1886622 1915277 + Sephs1 protein_coding processed_transcript MGP_C3HHeJ_T0054176.1 MGP_C3HHeJ_G0025405.1 mouse_genomes_project 2 34960560 34961490 + MGP_C3HHeJ_P0054176 Olfr346 protein_coding protein_coding MGP_C3HHeJ_T0057285.1 MGP_C3HHeJ_G0026213.1 mouse_genomes_project 2 132271582 132313307 + Tgm6 protein_coding processed_transcript MGP_C3HHeJ_T0057286.1 MGP_C3HHeJ_G0026213.1 mouse_genomes_project 2 132282934 132313307 + Tgm6 protein_coding processed_transcript MGP_C3HHeJ_T0057287.1 MGP_C3HHeJ_G0026213.1 mouse_genomes_project 2 132282934 132313307 + MGP_C3HHeJ_P0057287 Tgm6 protein_coding protein_coding MGP_C3HHeJ_T0056878.1 MGP_C3HHeJ_G0026111.1 mouse_genomes_project 2 123053582 123082529 + MGP_C3HHeJ_P0056878 Pdia3 protein_coding protein_coding MGP_C3HHeJ_T0056879.1 MGP_C3HHeJ_G0026111.1 mouse_genomes_project 2 123053690 123066469 + Pdia3 protein_coding processed_transcript MGP_C3HHeJ_T0056880.1 MGP_C3HHeJ_G0026111.1 mouse_genomes_project 2 123053915 123076636 + MGP_C3HHeJ_P0056880 Pdia3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056881.1 MGP_C3HHeJ_G0026111.1 mouse_genomes_project 2 123066497 123075083 + Pdia3 protein_coding retained_intron MGP_C3HHeJ_T0059607.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186333676 186339655 + MGP_C3HHeJ_P0059607 Oprl1 protein_coding protein_coding MGP_C3HHeJ_T0059608.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186333702 186339645 + MGP_C3HHeJ_P0059608 Oprl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059609.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186333706 186337257 + MGP_C3HHeJ_P0059609 Oprl1 protein_coding protein_coding MGP_C3HHeJ_T0059610.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186333727 186339644 + MGP_C3HHeJ_P0059610 Oprl1 protein_coding protein_coding MGP_C3HHeJ_T0059611.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186333743 186339642 + MGP_C3HHeJ_P0059611 Oprl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059612.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186333754 186339644 + Oprl1 protein_coding processed_transcript MGP_C3HHeJ_T0059613.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186333761 186335039 + Oprl1 protein_coding processed_transcript MGP_C3HHeJ_T0059614.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186334008 186339642 + MGP_C3HHeJ_P0059614 Oprl1 protein_coding protein_coding MGP_C3HHeJ_T0059615.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186334253 186338018 + MGP_C3HHeJ_P0059615 Oprl1 protein_coding protein_coding MGP_C3HHeJ_T0059616.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186334362 186338039 + MGP_C3HHeJ_P0059616 Oprl1 protein_coding protein_coding MGP_C3HHeJ_T0059617.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186334363 186338039 + MGP_C3HHeJ_P0059617 Oprl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098110.1 MGP_C3HHeJ_G0036322.1 mouse_genomes_project 2 121175242 121175361 + n-R5s204 rRNA rRNA MGP_C3HHeJ_T0010283.1 MGP_C3HHeJ_G0008416.1 mouse_genomes_project 2 7718988 7719109 + Mir466l miRNA miRNA MGP_C3HHeJ_T0100494.1 MGP_C3HHeJ_G0038688.1 mouse_genomes_project 2 152443061 152443153 - Gm24551 snoRNA snoRNA MGP_C3HHeJ_T0004000.1 MGP_C3HHeJ_G0003545.1 mouse_genomes_project 2 124575649 124580745 - Bloc1s6os antisense antisense MGP_C3HHeJ_T0013360.1 MGP_C3HHeJ_G0011464.1 mouse_genomes_project 2 37278908 37279495 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054180.1 MGP_C3HHeJ_G0025408.1 mouse_genomes_project 2 35067986 35068925 + MGP_C3HHeJ_P0054180 Olfr50 protein_coding protein_coding MGP_C3HHeJ_T0010308.1 MGP_C3HHeJ_G0008441.1 mouse_genomes_project 2 27917124 27917195 + Mir6997 miRNA miRNA MGP_C3HHeJ_T0053358.1 MGP_C3HHeJ_G0025280.1 mouse_genomes_project 2 27722307 27748688 + Urm1 protein_coding processed_transcript MGP_C3HHeJ_T0053359.1 MGP_C3HHeJ_G0025280.1 mouse_genomes_project 2 27731858 27748917 + Urm1 protein_coding processed_transcript MGP_C3HHeJ_T0053360.1 MGP_C3HHeJ_G0025280.1 mouse_genomes_project 2 27731858 27750545 + MGP_C3HHeJ_P0053360 Urm1 protein_coding protein_coding MGP_C3HHeJ_T0053361.1 MGP_C3HHeJ_G0025280.1 mouse_genomes_project 2 27731877 27748964 + Urm1 protein_coding processed_transcript MGP_C3HHeJ_T0053362.1 MGP_C3HHeJ_G0025280.1 mouse_genomes_project 2 27731911 27738152 + Urm1 protein_coding retained_intron MGP_C3HHeJ_T0053363.1 MGP_C3HHeJ_G0025280.1 mouse_genomes_project 2 27747190 27749607 + Urm1 protein_coding retained_intron MGP_C3HHeJ_T0058532.1 MGP_C3HHeJ_G0026500.1 mouse_genomes_project 2 160974466 160984461 - MGP_C3HHeJ_P0058532 Blcap protein_coding protein_coding MGP_C3HHeJ_T0058533.1 MGP_C3HHeJ_G0026500.1 mouse_genomes_project 2 160974466 160984437 - MGP_C3HHeJ_P0058533 Blcap protein_coding protein_coding MGP_C3HHeJ_T0058534.1 MGP_C3HHeJ_G0026500.1 mouse_genomes_project 2 160976205 160989117 - MGP_C3HHeJ_P0058534 Blcap protein_coding protein_coding MGP_C3HHeJ_T0058535.1 MGP_C3HHeJ_G0026500.1 mouse_genomes_project 2 160976291 160978111 - Blcap protein_coding processed_transcript MGP_C3HHeJ_T0058546.1 MGP_C3HHeJ_G0026500.1 mouse_genomes_project 2 160983689 160984431 - Blcap protein_coding processed_transcript MGP_C3HHeJ_T0058547.1 MGP_C3HHeJ_G0026500.1 mouse_genomes_project 2 160984974 160989117 - Blcap protein_coding processed_transcript MGP_C3HHeJ_T0013307.1 MGP_C3HHeJ_G0011411.1 mouse_genomes_project 2 17026186 17026414 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013555.1 MGP_C3HHeJ_G0011659.1 mouse_genomes_project 2 105656238 105656582 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054169.1 MGP_C3HHeJ_G0025398.1 mouse_genomes_project 2 34651074 34651995 + MGP_C3HHeJ_P0054169 Olfr338 protein_coding protein_coding MGP_C3HHeJ_T0055096.1 MGP_C3HHeJ_G0025586.1 mouse_genomes_project 2 74288562 74290718 + MGP_C3HHeJ_P0055096 Hoxd1 protein_coding protein_coding MGP_C3HHeJ_T0099183.1 MGP_C3HHeJ_G0037377.1 mouse_genomes_project 2 26422992 26423096 + Gm22675 snRNA snRNA MGP_C3HHeJ_T0010391.1 MGP_C3HHeJ_G0008524.1 mouse_genomes_project 2 162575857 162575950 + Gm44319 miRNA miRNA MGP_C3HHeJ_T0059436.1 MGP_C3HHeJ_G0026725.1 mouse_genomes_project 2 185620764 185641512 - MGP_C3HHeJ_P0059436 Chrna4 protein_coding protein_coding MGP_C3HHeJ_T0059437.1 MGP_C3HHeJ_G0026725.1 mouse_genomes_project 2 185620765 185630730 - MGP_C3HHeJ_P0059437 Chrna4 protein_coding protein_coding MGP_C3HHeJ_T0059438.1 MGP_C3HHeJ_G0026725.1 mouse_genomes_project 2 185624711 185641742 - MGP_C3HHeJ_P0059438 Chrna4 protein_coding protein_coding MGP_C3HHeJ_T0059439.1 MGP_C3HHeJ_G0026725.1 mouse_genomes_project 2 185631826 185641662 - Chrna4 protein_coding processed_transcript MGP_C3HHeJ_T0059440.1 MGP_C3HHeJ_G0026725.1 mouse_genomes_project 2 185636425 185645994 - MGP_C3HHeJ_P0059440 Chrna4 protein_coding protein_coding MGP_C3HHeJ_T0055129.1 MGP_C3HHeJ_G0025598.1 mouse_genomes_project 2 76232697 76250646 - MGP_C3HHeJ_P0055129 Prkra protein_coding protein_coding MGP_C3HHeJ_T0055130.1 MGP_C3HHeJ_G0025598.1 mouse_genomes_project 2 76239420 76243359 - Prkra protein_coding processed_transcript MGP_C3HHeJ_T0055541.1 MGP_C3HHeJ_G0025778.1 mouse_genomes_project 2 88552990 88555042 - MGP_C3HHeJ_P0055541 protein_coding protein_coding MGP_C3HHeJ_T0056528.1 MGP_C3HHeJ_G0026051.1 mouse_genomes_project 2 120629403 120638356 + MGP_C3HHeJ_P0056528 Rad51 protein_coding protein_coding MGP_C3HHeJ_T0056529.1 MGP_C3HHeJ_G0026051.1 mouse_genomes_project 2 120629417 120652835 + MGP_C3HHeJ_P0056529 Rad51 protein_coding protein_coding MGP_C3HHeJ_T0056530.1 MGP_C3HHeJ_G0026051.1 mouse_genomes_project 2 120629424 120649146 + Rad51 protein_coding retained_intron MGP_C3HHeJ_T0056531.1 MGP_C3HHeJ_G0026051.1 mouse_genomes_project 2 120629427 120652583 + MGP_C3HHeJ_P0056531 Rad51 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056532.1 MGP_C3HHeJ_G0026051.1 mouse_genomes_project 2 120635320 120636772 + Rad51 protein_coding retained_intron MGP_C3HHeJ_T0056533.1 MGP_C3HHeJ_G0026051.1 mouse_genomes_project 2 120638312 120663252 + MGP_C3HHeJ_P0056533 Rad51 protein_coding protein_coding MGP_C3HHeJ_T0056534.1 MGP_C3HHeJ_G0026051.1 mouse_genomes_project 2 120647056 120650006 + Rad51 protein_coding retained_intron MGP_C3HHeJ_T0056535.1 MGP_C3HHeJ_G0026051.1 mouse_genomes_project 2 120649712 120650759 + Rad51 protein_coding retained_intron MGP_C3HHeJ_T0017530.1 MGP_C3HHeJ_G0015167.1 mouse_genomes_project 2 25309121 25312058 + Gm13421 processed_transcript processed_transcript MGP_C3HHeJ_T0017531.1 MGP_C3HHeJ_G0015167.1 mouse_genomes_project 2 25309124 25311881 + Gm13421 processed_transcript processed_transcript MGP_C3HHeJ_T0052098.1 MGP_C3HHeJ_G0025055.1 mouse_genomes_project 2 2331263 2756548 - MGP_C3HHeJ_P0052098 Camk1d protein_coding protein_coding MGP_C3HHeJ_T0052099.1 MGP_C3HHeJ_G0025055.1 mouse_genomes_project 2 2336693 2724752 - MGP_C3HHeJ_P0052099 Camk1d protein_coding protein_coding MGP_C3HHeJ_T0052100.1 MGP_C3HHeJ_G0025055.1 mouse_genomes_project 2 2490855 2725106 - Camk1d protein_coding processed_transcript MGP_C3HHeJ_T0052101.1 MGP_C3HHeJ_G0025055.1 mouse_genomes_project 2 2606237 2756536 - Camk1d protein_coding processed_transcript MGP_C3HHeJ_T0013450.1 MGP_C3HHeJ_G0011554.1 mouse_genomes_project 2 71210316 71210846 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013333.1 MGP_C3HHeJ_G0011437.1 mouse_genomes_project 2 27379634 27379925 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056472.1 MGP_C3HHeJ_G0026037.1 mouse_genomes_project 2 120091278 120138352 + MGP_C3HHeJ_P0056472 Bub1b protein_coding protein_coding MGP_C3HHeJ_T0056473.1 MGP_C3HHeJ_G0026037.1 mouse_genomes_project 2 120093204 120102866 + Bub1b protein_coding retained_intron MGP_C3HHeJ_T0056474.1 MGP_C3HHeJ_G0026037.1 mouse_genomes_project 2 120123400 120125115 + Bub1b protein_coding retained_intron MGP_C3HHeJ_T0056475.1 MGP_C3HHeJ_G0026037.1 mouse_genomes_project 2 120124822 120133509 + Bub1b protein_coding retained_intron MGP_C3HHeJ_T0056497.1 MGP_C3HHeJ_G0026044.1 mouse_genomes_project 2 120321245 120344418 + MGP_C3HHeJ_P0056497 Knstrn protein_coding protein_coding MGP_C3HHeJ_T0056498.1 MGP_C3HHeJ_G0026044.1 mouse_genomes_project 2 120321474 120340898 + MGP_C3HHeJ_P0056498 Knstrn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056499.1 MGP_C3HHeJ_G0026044.1 mouse_genomes_project 2 120321474 120340966 + MGP_C3HHeJ_P0056499 Knstrn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056500.1 MGP_C3HHeJ_G0026044.1 mouse_genomes_project 2 120321475 120340875 + MGP_C3HHeJ_P0056500 Knstrn protein_coding protein_coding MGP_C3HHeJ_T0056501.1 MGP_C3HHeJ_G0026044.1 mouse_genomes_project 2 120321496 120341359 + MGP_C3HHeJ_P0056501 Knstrn protein_coding protein_coding MGP_C3HHeJ_T0056502.1 MGP_C3HHeJ_G0026044.1 mouse_genomes_project 2 120321519 120337757 + MGP_C3HHeJ_P0056502 Knstrn protein_coding protein_coding MGP_C3HHeJ_T0056503.1 MGP_C3HHeJ_G0026044.1 mouse_genomes_project 2 120321538 120340785 + MGP_C3HHeJ_P0056503 Knstrn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056504.1 MGP_C3HHeJ_G0026044.1 mouse_genomes_project 2 120338354 120343865 + MGP_C3HHeJ_P0056504 Knstrn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056505.1 MGP_C3HHeJ_G0026044.1 mouse_genomes_project 2 120340791 120361548 + MGP_C3HHeJ_P0056505 Knstrn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098391.1 MGP_C3HHeJ_G0036597.1 mouse_genomes_project 2 1165369 1167929 + Gm37107 sense_intronic sense_intronic MGP_C3HHeJ_T0056392.1 MGP_C3HHeJ_G0026020.1 mouse_genomes_project 2 115318614 115324198 - MGP_C3HHeJ_P0056392 Actc1 protein_coding protein_coding MGP_C3HHeJ_T0056393.1 MGP_C3HHeJ_G0026020.1 mouse_genomes_project 2 115323224 115324845 - MGP_C3HHeJ_P0056393 Actc1 protein_coding protein_coding MGP_C3HHeJ_T0056969.1 MGP_C3HHeJ_G0026135.1 mouse_genomes_project 2 124410445 124431506 - MGP_C3HHeJ_P0056969 Gatm protein_coding protein_coding MGP_C3HHeJ_T0056970.1 MGP_C3HHeJ_G0026135.1 mouse_genomes_project 2 124411463 124414485 - Gatm protein_coding processed_transcript MGP_C3HHeJ_T0056971.1 MGP_C3HHeJ_G0026135.1 mouse_genomes_project 2 124411580 124414763 - Gatm protein_coding retained_intron MGP_C3HHeJ_T0013712.1 MGP_C3HHeJ_G0011816.1 mouse_genomes_project 2 169750865 169751462 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056578.1 MGP_C3HHeJ_G0026065.1 mouse_genomes_project 2 121085154 121127011 + MGP_C3HHeJ_P0056578 Chp1 protein_coding protein_coding MGP_C3HHeJ_T0056579.1 MGP_C3HHeJ_G0026065.1 mouse_genomes_project 2 121085182 121128881 + MGP_C3HHeJ_P0056579 Chp1 protein_coding protein_coding MGP_C3HHeJ_T0056580.1 MGP_C3HHeJ_G0026065.1 mouse_genomes_project 2 121085273 121112970 + Chp1 protein_coding retained_intron MGP_C3HHeJ_T0056581.1 MGP_C3HHeJ_G0026065.1 mouse_genomes_project 2 121107822 121127256 + Chp1 protein_coding retained_intron MGP_C3HHeJ_T0013589.1 MGP_C3HHeJ_G0011693.1 mouse_genomes_project 2 121222154 121222540 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052355.1 MGP_C3HHeJ_G0025094.1 mouse_genomes_project 2 11522408 11572466 + MGP_C3HHeJ_P0052355 Tmem236 protein_coding protein_coding MGP_C3HHeJ_T0058491.1 MGP_C3HHeJ_G0026493.1 mouse_genomes_project 2 160472584 160511834 - MGP_C3HHeJ_P0058491 Samhd1 protein_coding protein_coding MGP_C3HHeJ_T0058492.1 MGP_C3HHeJ_G0026493.1 mouse_genomes_project 2 160474477 160511662 - MGP_C3HHeJ_P0058492 Samhd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058493.1 MGP_C3HHeJ_G0026493.1 mouse_genomes_project 2 160474477 160511689 - MGP_C3HHeJ_P0058493 Samhd1 protein_coding protein_coding MGP_C3HHeJ_T0058494.1 MGP_C3HHeJ_G0026493.1 mouse_genomes_project 2 160476436 160511791 - MGP_C3HHeJ_P0058494 Samhd1 protein_coding protein_coding MGP_C3HHeJ_T0058495.1 MGP_C3HHeJ_G0026493.1 mouse_genomes_project 2 160476770 160487312 - Samhd1 protein_coding retained_intron MGP_C3HHeJ_T0058496.1 MGP_C3HHeJ_G0026493.1 mouse_genomes_project 2 160478389 160511775 - MGP_C3HHeJ_P0058496 Samhd1 protein_coding protein_coding MGP_C3HHeJ_T0058497.1 MGP_C3HHeJ_G0026493.1 mouse_genomes_project 2 160485979 160487311 - Samhd1 protein_coding retained_intron MGP_C3HHeJ_T0058498.1 MGP_C3HHeJ_G0026493.1 mouse_genomes_project 2 160496227 160511506 - Samhd1 protein_coding retained_intron MGP_C3HHeJ_T0058499.1 MGP_C3HHeJ_G0026493.1 mouse_genomes_project 2 160498510 160506721 - Samhd1 protein_coding retained_intron MGP_C3HHeJ_T0054855.1 MGP_C3HHeJ_G0025538.1 mouse_genomes_project 2 69175909 69178290 + Klhl23 protein_coding processed_transcript MGP_C3HHeJ_T0054856.1 MGP_C3HHeJ_G0025538.1 mouse_genomes_project 2 69176335 69190621 + MGP_C3HHeJ_P0054856 Klhl23 protein_coding protein_coding MGP_C3HHeJ_T0054857.1 MGP_C3HHeJ_G0025538.1 mouse_genomes_project 2 69178320 69180211 + Klhl23 protein_coding processed_transcript MGP_C3HHeJ_T0052863.1 MGP_C3HHeJ_G0025183.1 mouse_genomes_project 2 23147852 23151192 - MGP_C3HHeJ_P0052863 Ptgds protein_coding protein_coding MGP_C3HHeJ_T0052864.1 MGP_C3HHeJ_G0025183.1 mouse_genomes_project 2 23147852 23150988 - MGP_C3HHeJ_P0052864 Ptgds protein_coding protein_coding MGP_C3HHeJ_T0052865.1 MGP_C3HHeJ_G0025183.1 mouse_genomes_project 2 23147852 23150895 - MGP_C3HHeJ_P0052865 Ptgds protein_coding protein_coding MGP_C3HHeJ_T0052866.1 MGP_C3HHeJ_G0025183.1 mouse_genomes_project 2 23147854 23150529 - Ptgds protein_coding retained_intron MGP_C3HHeJ_T0052867.1 MGP_C3HHeJ_G0025183.1 mouse_genomes_project 2 23147855 23150303 - Ptgds protein_coding processed_transcript MGP_C3HHeJ_T0055615.1 MGP_C3HHeJ_G0025838.1 mouse_genomes_project 2 90110649 90113965 + MGP_C3HHeJ_P0055615 Olfr1257 protein_coding protein_coding MGP_C3HHeJ_T0055616.1 MGP_C3HHeJ_G0025838.1 mouse_genomes_project 2 90113001 90114017 + MGP_C3HHeJ_P0055616 Olfr1257 protein_coding protein_coding MGP_C3HHeJ_T0010354.1 MGP_C3HHeJ_G0008487.1 mouse_genomes_project 2 95034113 95034192 - Gm44461 miRNA miRNA MGP_C3HHeJ_T0054111.1 MGP_C3HHeJ_G0025386.1 mouse_genomes_project 2 33543476 33566467 - MGP_C3HHeJ_P0054111 Stom protein_coding protein_coding MGP_C3HHeJ_T0054112.1 MGP_C3HHeJ_G0025386.1 mouse_genomes_project 2 33544829 33549994 - Stom protein_coding retained_intron MGP_C3HHeJ_T0054298.1 MGP_C3HHeJ_G0025444.1 mouse_genomes_project 2 37422426 37552306 - MGP_C3HHeJ_P0054298 protein_coding protein_coding MGP_C3HHeJ_T0054299.1 MGP_C3HHeJ_G0025444.1 mouse_genomes_project 2 37430977 37552277 - MGP_C3HHeJ_P0054299 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054300.1 MGP_C3HHeJ_G0025444.1 mouse_genomes_project 2 37431219 37552264 - MGP_C3HHeJ_P0054300 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054301.1 MGP_C3HHeJ_G0025444.1 mouse_genomes_project 2 37431284 37456506 - MGP_C3HHeJ_P0054301 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054302.1 MGP_C3HHeJ_G0025444.1 mouse_genomes_project 2 37437151 37552302 - MGP_C3HHeJ_P0054302 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054303.1 MGP_C3HHeJ_G0025444.1 mouse_genomes_project 2 37459578 37552306 - protein_coding retained_intron MGP_C3HHeJ_T0054304.1 MGP_C3HHeJ_G0025444.1 mouse_genomes_project 2 37462456 37552302 - protein_coding retained_intron MGP_C3HHeJ_T0054305.1 MGP_C3HHeJ_G0025444.1 mouse_genomes_project 2 37465683 37467738 - protein_coding retained_intron MGP_C3HHeJ_T0054306.1 MGP_C3HHeJ_G0025444.1 mouse_genomes_project 2 37465832 37480101 - protein_coding retained_intron MGP_C3HHeJ_T0101914.1 MGP_C3HHeJ_G0039879.1 mouse_genomes_project 2 88452639 88453575 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100499.1 MGP_C3HHeJ_G0038693.1 mouse_genomes_project 2 154283654 154283790 - snoRNA snoRNA MGP_C3HHeJ_T0013631.1 MGP_C3HHeJ_G0011735.1 mouse_genomes_project 2 142412870 142413298 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058628.1 MGP_C3HHeJ_G0026522.1 mouse_genomes_project 2 164210306 164291013 + MGP_C3HHeJ_P0058628 Top1 protein_coding protein_coding MGP_C3HHeJ_T0058629.1 MGP_C3HHeJ_G0026522.1 mouse_genomes_project 2 164210398 164214526 + Top1 protein_coding processed_transcript MGP_C3HHeJ_T0058630.1 MGP_C3HHeJ_G0026522.1 mouse_genomes_project 2 164234579 164250399 + Top1 protein_coding retained_intron MGP_C3HHeJ_T0058631.1 MGP_C3HHeJ_G0026522.1 mouse_genomes_project 2 164251116 164259041 + Top1 protein_coding retained_intron MGP_C3HHeJ_T0058632.1 MGP_C3HHeJ_G0026522.1 mouse_genomes_project 2 164269292 164270829 + Top1 protein_coding processed_transcript MGP_C3HHeJ_T0058633.1 MGP_C3HHeJ_G0026522.1 mouse_genomes_project 2 164285735 164289633 + Top1 protein_coding retained_intron MGP_C3HHeJ_T0059049.1 MGP_C3HHeJ_G0026626.1 mouse_genomes_project 2 170966070 170970195 + protein_coding antisense MGP_C3HHeJ_T0059050.1 MGP_C3HHeJ_G0026626.1 mouse_genomes_project 2 170966070 170970194 + MGP_C3HHeJ_P0059050 protein_coding protein_coding MGP_C3HHeJ_T0059051.1 MGP_C3HHeJ_G0026626.1 mouse_genomes_project 2 170966071 170969907 + protein_coding retained_intron MGP_C3HHeJ_T0059052.1 MGP_C3HHeJ_G0026626.1 mouse_genomes_project 2 170966357 170969715 + protein_coding retained_intron MGP_C3HHeJ_T0059053.1 MGP_C3HHeJ_G0026626.1 mouse_genomes_project 2 170966359 170970055 + protein_coding retained_intron MGP_C3HHeJ_T0059054.1 MGP_C3HHeJ_G0026626.1 mouse_genomes_project 2 170966785 170970195 + protein_coding retained_intron MGP_C3HHeJ_T0099179.1 MGP_C3HHeJ_G0037373.1 mouse_genomes_project 2 22675289 22675393 - Gm24875 snRNA snRNA MGP_C3HHeJ_T0013577.1 MGP_C3HHeJ_G0011681.1 mouse_genomes_project 2 113125885 113127638 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055545.1 MGP_C3HHeJ_G0025782.1 mouse_genomes_project 2 88644164 88644551 - MGP_C3HHeJ_P0055545 Olfr1187-ps1 protein_coding protein_coding MGP_C3HHeJ_T0055546.1 MGP_C3HHeJ_G0025782.1 mouse_genomes_project 2 88644167 88644470 - MGP_C3HHeJ_P0055546 Olfr1187-ps1 protein_coding protein_coding MGP_C3HHeJ_T0007348.1 MGP_C3HHeJ_G0006022.1 mouse_genomes_project 2 183930148 183932093 + 4930591A17Rik lincRNA lincRNA MGP_C3HHeJ_T0053208.1 MGP_C3HHeJ_G0025250.1 mouse_genomes_project 2 25452587 25521480 + MGP_C3HHeJ_P0053208 Rxra protein_coding protein_coding MGP_C3HHeJ_T0053209.1 MGP_C3HHeJ_G0025250.1 mouse_genomes_project 2 25487342 25541131 + MGP_C3HHeJ_P0053209 Rxra protein_coding protein_coding MGP_C3HHeJ_T0053210.1 MGP_C3HHeJ_G0025250.1 mouse_genomes_project 2 25488633 25541131 + MGP_C3HHeJ_P0053210 Rxra protein_coding protein_coding MGP_C3HHeJ_T0053211.1 MGP_C3HHeJ_G0025250.1 mouse_genomes_project 2 25516880 25543905 + MGP_C3HHeJ_P0053211 Rxra protein_coding protein_coding MGP_C3HHeJ_T0053212.1 MGP_C3HHeJ_G0025250.1 mouse_genomes_project 2 25516880 25542365 + MGP_C3HHeJ_P0053212 Rxra protein_coding protein_coding MGP_C3HHeJ_T0053213.1 MGP_C3HHeJ_G0025250.1 mouse_genomes_project 2 25519782 25529619 + Rxra protein_coding processed_transcript MGP_C3HHeJ_T0059404.1 MGP_C3HHeJ_G0026719.1 mouse_genomes_project 2 185359267 185361787 - MGP_C3HHeJ_P0059404 Bhlhe23 protein_coding protein_coding MGP_C3HHeJ_T0054280.1 MGP_C3HHeJ_G0025441.1 mouse_genomes_project 2 37354878 37358923 - MGP_C3HHeJ_P0054280 Rpl35 protein_coding protein_coding MGP_C3HHeJ_T0054281.1 MGP_C3HHeJ_G0025441.1 mouse_genomes_project 2 37354917 37358342 - Rpl35 protein_coding processed_transcript MGP_C3HHeJ_T0054282.1 MGP_C3HHeJ_G0025441.1 mouse_genomes_project 2 37357910 37358421 - Rpl35 protein_coding processed_transcript MGP_C3HHeJ_T0099225.1 MGP_C3HHeJ_G0037419.1 mouse_genomes_project 2 156253704 156253807 + Gm25643 snRNA snRNA MGP_C3HHeJ_T0013466.1 MGP_C3HHeJ_G0011570.1 mouse_genomes_project 2 76920244 76921354 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007237.1 MGP_C3HHeJ_G0005928.1 mouse_genomes_project 2 126650542 126652971 + Gm13994 lincRNA lincRNA MGP_C3HHeJ_T0013461.1 MGP_C3HHeJ_G0011565.1 mouse_genomes_project 2 74154190 74154649 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059063.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171345702 171404660 + MGP_C3HHeJ_P0059063 Slc9a8 protein_coding protein_coding MGP_C3HHeJ_T0059064.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171345711 171402296 + MGP_C3HHeJ_P0059064 Slc9a8 protein_coding protein_coding MGP_C3HHeJ_T0059065.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171345711 171404658 + MGP_C3HHeJ_P0059065 Slc9a8 protein_coding protein_coding MGP_C3HHeJ_T0059066.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171345713 171350125 + Slc9a8 protein_coding retained_intron MGP_C3HHeJ_T0059067.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171345720 171372355 + Slc9a8 protein_coding retained_intron MGP_C3HHeJ_T0059068.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171345722 171404659 + Slc9a8 protein_coding processed_transcript MGP_C3HHeJ_T0059069.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171345727 171360592 + Slc9a8 protein_coding retained_intron MGP_C3HHeJ_T0059070.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171345728 171395369 + Slc9a8 protein_coding processed_transcript MGP_C3HHeJ_T0059071.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171345732 171404659 + Slc9a8 protein_coding processed_transcript MGP_C3HHeJ_T0059072.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171348109 171395396 + Slc9a8 protein_coding processed_transcript MGP_C3HHeJ_T0059073.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171376370 171395394 + Slc9a8 protein_coding processed_transcript MGP_C3HHeJ_T0059074.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171376459 171396736 + Slc9a8 protein_coding processed_transcript MGP_C3HHeJ_T0059075.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171376559 171404659 + Slc9a8 protein_coding processed_transcript MGP_C3HHeJ_T0098112.1 MGP_C3HHeJ_G0036324.1 mouse_genomes_project 2 123588619 123588733 - Gm23983 rRNA rRNA MGP_C3HHeJ_T0053281.1 MGP_C3HHeJ_G0025266.1 mouse_genomes_project 2 26657130 26675208 - MGP_C3HHeJ_P0053281 Gtf3c4 protein_coding protein_coding MGP_C3HHeJ_T0053282.1 MGP_C3HHeJ_G0025266.1 mouse_genomes_project 2 26657136 26675134 - MGP_C3HHeJ_P0053282 Gtf3c4 protein_coding protein_coding MGP_C3HHeJ_T0053283.1 MGP_C3HHeJ_G0025266.1 mouse_genomes_project 2 26670051 26675134 - Gtf3c4 protein_coding processed_transcript MGP_C3HHeJ_T0053284.1 MGP_C3HHeJ_G0025266.1 mouse_genomes_project 2 26670151 26675200 - Gtf3c4 protein_coding processed_transcript MGP_C3HHeJ_T0056124.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104485793 104523191 - MGP_C3HHeJ_P0056124 Caprin1 protein_coding protein_coding MGP_C3HHeJ_T0056125.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104487870 104522646 - MGP_C3HHeJ_P0056125 Caprin1 protein_coding protein_coding MGP_C3HHeJ_T0056126.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104491337 104497012 - MGP_C3HHeJ_P0056126 Caprin1 protein_coding protein_coding MGP_C3HHeJ_T0056127.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104492042 104496024 - MGP_C3HHeJ_P0056127 Caprin1 protein_coding protein_coding MGP_C3HHeJ_T0056128.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104492680 104496915 - Caprin1 protein_coding retained_intron MGP_C3HHeJ_T0056129.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104495941 104498503 - Caprin1 protein_coding retained_intron MGP_C3HHeJ_T0056130.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104496979 104497942 - Caprin1 protein_coding processed_transcript MGP_C3HHeJ_T0056131.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104497228 104503599 - MGP_C3HHeJ_P0056131 Caprin1 protein_coding protein_coding MGP_C3HHeJ_T0056132.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104497231 104500239 - Caprin1 protein_coding retained_intron MGP_C3HHeJ_T0056133.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104497701 104499885 - Caprin1 protein_coding processed_transcript MGP_C3HHeJ_T0056134.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104502193 104522475 - Caprin1 protein_coding processed_transcript MGP_C3HHeJ_T0056135.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104503754 104522086 - Caprin1 protein_coding processed_transcript MGP_C3HHeJ_T0056136.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104506651 104522515 - Caprin1 protein_coding retained_intron MGP_C3HHeJ_T0056137.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104507049 104522410 - Caprin1 protein_coding processed_transcript MGP_C3HHeJ_T0056138.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104521993 104523141 - Caprin1 protein_coding retained_intron MGP_C3HHeJ_T0013602.1 MGP_C3HHeJ_G0011706.1 mouse_genomes_project 2 130658980 130659961 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057822.1 MGP_C3HHeJ_G0026339.1 mouse_genomes_project 2 151735342 151739197 - MGP_C3HHeJ_P0057822 Cst3 protein_coding protein_coding MGP_C3HHeJ_T0057823.1 MGP_C3HHeJ_G0026339.1 mouse_genomes_project 2 151736089 151739072 - Cst3 protein_coding processed_transcript MGP_C3HHeJ_T0057824.1 MGP_C3HHeJ_G0026339.1 mouse_genomes_project 2 151736465 151739313 - MGP_C3HHeJ_P0057824 Cst3 protein_coding protein_coding MGP_C3HHeJ_T0001032.1 MGP_C3HHeJ_G0000969.1 mouse_genomes_project 2 33509880 33511501 + TEC TEC MGP_C3HHeJ_T0055518.1 MGP_C3HHeJ_G0025756.1 mouse_genomes_project 2 87910149 87911127 + MGP_C3HHeJ_P0055518 Olfr1145 protein_coding protein_coding MGP_C3HHeJ_T0003844.1 MGP_C3HHeJ_G0003437.1 mouse_genomes_project 2 22941682 22949388 + Grin1os antisense antisense MGP_C3HHeJ_T0013654.1 MGP_C3HHeJ_G0011758.1 mouse_genomes_project 2 149951171 149951972 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055365.1 MGP_C3HHeJ_G0025645.1 mouse_genomes_project 2 84625870 84641610 - MGP_C3HHeJ_P0055365 Rtn4rl2 protein_coding protein_coding MGP_C3HHeJ_T0055366.1 MGP_C3HHeJ_G0025645.1 mouse_genomes_project 2 84625892 84641592 - MGP_C3HHeJ_P0055366 Rtn4rl2 protein_coding protein_coding MGP_C3HHeJ_T0055367.1 MGP_C3HHeJ_G0025645.1 mouse_genomes_project 2 84634462 84641376 - Rtn4rl2 protein_coding processed_transcript MGP_C3HHeJ_T0010339.1 MGP_C3HHeJ_G0008472.1 mouse_genomes_project 2 75913010 75913124 + Gm44337 miRNA miRNA MGP_C3HHeJ_T0003912.1 MGP_C3HHeJ_G0003486.1 mouse_genomes_project 2 61845569 61847184 + Gm13569 antisense antisense MGP_C3HHeJ_T0052736.1 MGP_C3HHeJ_G0025162.1 mouse_genomes_project 2 22883018 22885330 - MGP_C3HHeJ_P0052736 Rnf224 protein_coding protein_coding MGP_C3HHeJ_T0052737.1 MGP_C3HHeJ_G0025162.1 mouse_genomes_project 2 22883525 22885232 - MGP_C3HHeJ_P0052737 Rnf224 protein_coding protein_coding MGP_C3HHeJ_T0101920.1 MGP_C3HHeJ_G0039885.1 mouse_genomes_project 2 90738582 90760681 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017562.1 MGP_C3HHeJ_G0015187.1 mouse_genomes_project 2 69227381 69228151 - Gm13625 processed_transcript processed_transcript MGP_C3HHeJ_T0056348.1 MGP_C3HHeJ_G0026005.1 mouse_genomes_project 2 113490474 113491821 + MGP_C3HHeJ_P0056348 Nop10 protein_coding protein_coding MGP_C3HHeJ_T0013299.1 MGP_C3HHeJ_G0011403.1 mouse_genomes_project 2 15639454 15639868 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010326.1 MGP_C3HHeJ_G0008459.1 mouse_genomes_project 2 37187519 37187608 + Mir181b-2 miRNA miRNA MGP_C3HHeJ_T0054612.1 MGP_C3HHeJ_G0025494.1 mouse_genomes_project 2 59384969 59527401 - MGP_C3HHeJ_P0054612 Pla2r1 protein_coding protein_coding MGP_C3HHeJ_T0054613.1 MGP_C3HHeJ_G0025494.1 mouse_genomes_project 2 59387451 59392448 - Pla2r1 protein_coding processed_transcript MGP_C3HHeJ_T0054614.1 MGP_C3HHeJ_G0025494.1 mouse_genomes_project 2 59408986 59411521 - Pla2r1 protein_coding retained_intron MGP_C3HHeJ_T0054615.1 MGP_C3HHeJ_G0025494.1 mouse_genomes_project 2 59419212 59527401 - Pla2r1 protein_coding retained_intron MGP_C3HHeJ_T0054616.1 MGP_C3HHeJ_G0025494.1 mouse_genomes_project 2 59420083 59423346 - Pla2r1 protein_coding retained_intron MGP_C3HHeJ_T0054617.1 MGP_C3HHeJ_G0025494.1 mouse_genomes_project 2 59505075 59527401 - Pla2r1 protein_coding retained_intron MGP_C3HHeJ_T0056544.1 MGP_C3HHeJ_G0026054.1 mouse_genomes_project 2 120688164 120728180 - MGP_C3HHeJ_P0056544 Dnajc17 protein_coding protein_coding MGP_C3HHeJ_T0056546.1 MGP_C3HHeJ_G0026054.1 mouse_genomes_project 2 120695086 120699319 - Dnajc17 protein_coding processed_transcript MGP_C3HHeJ_T0056547.1 MGP_C3HHeJ_G0026054.1 mouse_genomes_project 2 120699356 120728167 - Dnajc17 protein_coding retained_intron MGP_C3HHeJ_T0054055.1 MGP_C3HHeJ_G0025378.1 mouse_genomes_project 2 33092158 33102678 + Cutal protein_coding retained_intron MGP_C3HHeJ_T0054056.1 MGP_C3HHeJ_G0025378.1 mouse_genomes_project 2 33092225 33110505 + MGP_C3HHeJ_P0054056 Cutal protein_coding protein_coding MGP_C3HHeJ_T0013566.1 MGP_C3HHeJ_G0011670.1 mouse_genomes_project 2 109659291 109660282 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013328.1 MGP_C3HHeJ_G0011432.1 mouse_genomes_project 2 24300108 24300677 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100463.1 MGP_C3HHeJ_G0038657.1 mouse_genomes_project 2 71454540 71454667 - Gm26408 snoRNA snoRNA MGP_C3HHeJ_T0058821.1 MGP_C3HHeJ_G0026579.1 mouse_genomes_project 2 168352096 168361799 + MGP_C3HHeJ_P0058821 Wfdc6a protein_coding protein_coding MGP_C3HHeJ_T0055515.1 MGP_C3HHeJ_G0025754.1 mouse_genomes_project 2 87882552 87883503 + MGP_C3HHeJ_P0055515 Olfr152 protein_coding protein_coding MGP_C3HHeJ_T0055516.1 MGP_C3HHeJ_G0025754.1 mouse_genomes_project 2 87882558 87883503 + MGP_C3HHeJ_P0055516 Olfr152 protein_coding protein_coding MGP_C3HHeJ_T0052587.1 MGP_C3HHeJ_G0025138.1 mouse_genomes_project 2 21818609 21833149 + MGP_C3HHeJ_P0052587 Il1f6 protein_coding protein_coding MGP_C3HHeJ_T0052588.1 MGP_C3HHeJ_G0025138.1 mouse_genomes_project 2 21818696 21832972 + Il1f6 protein_coding processed_transcript MGP_C3HHeJ_T0059330.1 MGP_C3HHeJ_G0026702.1 mouse_genomes_project 2 184642039 184647063 - MGP_C3HHeJ_P0059330 Hrh3 protein_coding protein_coding MGP_C3HHeJ_T0059331.1 MGP_C3HHeJ_G0026702.1 mouse_genomes_project 2 184642225 184646726 - MGP_C3HHeJ_P0059331 Hrh3 protein_coding protein_coding MGP_C3HHeJ_T0059332.1 MGP_C3HHeJ_G0026702.1 mouse_genomes_project 2 184642452 184646726 - MGP_C3HHeJ_P0059332 Hrh3 protein_coding protein_coding MGP_C3HHeJ_T0059333.1 MGP_C3HHeJ_G0026702.1 mouse_genomes_project 2 184642452 184646726 - MGP_C3HHeJ_P0059333 Hrh3 protein_coding protein_coding MGP_C3HHeJ_T0059334.1 MGP_C3HHeJ_G0026702.1 mouse_genomes_project 2 184642853 184646749 - MGP_C3HHeJ_P0059334 Hrh3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059335.1 MGP_C3HHeJ_G0026702.1 mouse_genomes_project 2 184643070 184646726 - MGP_C3HHeJ_P0059335 Hrh3 protein_coding protein_coding MGP_C3HHeJ_T0059336.1 MGP_C3HHeJ_G0026702.1 mouse_genomes_project 2 184643070 184646726 - MGP_C3HHeJ_P0059336 Hrh3 protein_coding protein_coding MGP_C3HHeJ_T0059337.1 MGP_C3HHeJ_G0026702.1 mouse_genomes_project 2 184643558 184645910 - Hrh3 protein_coding retained_intron MGP_C3HHeJ_T0017516.1 MGP_C3HHeJ_G0015159.1 mouse_genomes_project 2 15503787 15506208 - 1810059C17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0011419.1 MGP_C3HHeJ_G0009552.1 mouse_genomes_project 2 145033205 145033509 + Gm23179 misc_RNA misc_RNA MGP_C3HHeJ_T0007270.1 MGP_C3HHeJ_G0005955.1 mouse_genomes_project 2 151321447 151331216 + Gm14120 lincRNA lincRNA MGP_C3HHeJ_T0007246.1 MGP_C3HHeJ_G0005935.1 mouse_genomes_project 2 134685742 134712048 + 4921508D12Rik lincRNA lincRNA MGP_C3HHeJ_T0055930.1 MGP_C3HHeJ_G0025892.1 mouse_genomes_project 2 93363278 93407352 + MGP_C3HHeJ_P0055930 Syt13 protein_coding protein_coding MGP_C3HHeJ_T0013357.1 MGP_C3HHeJ_G0011461.1 mouse_genomes_project 2 35970342 35971138 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017532.1 MGP_C3HHeJ_G0015168.1 mouse_genomes_project 2 25667614 25671742 - 2810430I11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0057209.1 MGP_C3HHeJ_G0026191.1 mouse_genomes_project 2 130567182 130568436 + MGP_C3HHeJ_P0057209 Gm29010 protein_coding protein_coding MGP_C3HHeJ_T0101882.1 MGP_C3HHeJ_G0039847.1 mouse_genomes_project 2 35304921 35305865 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013537.1 MGP_C3HHeJ_G0011641.1 mouse_genomes_project 2 100960187 100960443 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007162.1 MGP_C3HHeJ_G0005869.1 mouse_genomes_project 2 76942049 76945582 + Gm13943 lincRNA lincRNA MGP_C3HHeJ_T0010331.1 MGP_C3HHeJ_G0008464.1 mouse_genomes_project 2 60774500 60774584 - Gm22403 miRNA miRNA MGP_C3HHeJ_T0101889.1 MGP_C3HHeJ_G0039854.1 mouse_genomes_project 2 85371510 85372431 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0055931.1 MGP_C3HHeJ_G0025893.1 mouse_genomes_project 2 93416459 93502652 - MGP_C3HHeJ_P0055931 Prdm11 protein_coding protein_coding MGP_C3HHeJ_T0055932.1 MGP_C3HHeJ_G0025893.1 mouse_genomes_project 2 93427110 93503225 - MGP_C3HHeJ_P0055932 Prdm11 protein_coding protein_coding MGP_C3HHeJ_T0055933.1 MGP_C3HHeJ_G0025893.1 mouse_genomes_project 2 93438422 93467144 - MGP_C3HHeJ_P0055933 Prdm11 protein_coding protein_coding MGP_C3HHeJ_T0055934.1 MGP_C3HHeJ_G0025893.1 mouse_genomes_project 2 93462072 93467171 - Prdm11 protein_coding processed_transcript MGP_C3HHeJ_T0055935.1 MGP_C3HHeJ_G0025893.1 mouse_genomes_project 2 93465875 93503248 - MGP_C3HHeJ_P0055935 Prdm11 protein_coding protein_coding MGP_C3HHeJ_T0010321.1 MGP_C3HHeJ_G0008454.1 mouse_genomes_project 2 31498770 31498823 - Gm25998 miRNA miRNA MGP_C3HHeJ_T0059092.1 MGP_C3HHeJ_G0026636.1 mouse_genomes_project 2 171635576 171637080 + MGP_C3HHeJ_P0059092 Cebpb protein_coding protein_coding MGP_C3HHeJ_T0013727.1 MGP_C3HHeJ_G0011831.1 mouse_genomes_project 2 178366231 178366886 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007138.1 MGP_C3HHeJ_G0005850.1 mouse_genomes_project 2 71196171 71198243 - Gm17250 lincRNA lincRNA MGP_C3HHeJ_T0054655.1 MGP_C3HHeJ_G0025499.1 mouse_genomes_project 2 60814980 60816607 + Tbr1 protein_coding processed_transcript MGP_C3HHeJ_T0054656.1 MGP_C3HHeJ_G0025499.1 mouse_genomes_project 2 60816501 60826162 + MGP_C3HHeJ_P0054656 Tbr1 protein_coding protein_coding MGP_C3HHeJ_T0054657.1 MGP_C3HHeJ_G0025499.1 mouse_genomes_project 2 60818310 60824579 + MGP_C3HHeJ_P0054657 Tbr1 protein_coding protein_coding MGP_C3HHeJ_T0054658.1 MGP_C3HHeJ_G0025499.1 mouse_genomes_project 2 60818321 60823849 + Tbr1 protein_coding processed_transcript MGP_C3HHeJ_T0013614.1 MGP_C3HHeJ_G0011718.1 mouse_genomes_project 2 133642192 133642517 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057600.1 MGP_C3HHeJ_G0026278.1 mouse_genomes_project 2 139125245 139194769 + MGP_C3HHeJ_P0057600 Snap25 protein_coding protein_coding MGP_C3HHeJ_T0057601.1 MGP_C3HHeJ_G0026278.1 mouse_genomes_project 2 139125246 139175054 + Snap25 protein_coding retained_intron MGP_C3HHeJ_T0057602.1 MGP_C3HHeJ_G0026278.1 mouse_genomes_project 2 139125270 139193692 + MGP_C3HHeJ_P0057602 Snap25 protein_coding protein_coding MGP_C3HHeJ_T0054909.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70346300 70442938 - MGP_C3HHeJ_P0054909 Mettl8 protein_coding protein_coding MGP_C3HHeJ_T0054910.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70346307 70442968 - MGP_C3HHeJ_P0054910 Mettl8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054911.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70346307 70442968 - MGP_C3HHeJ_P0054911 Mettl8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054912.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70346307 70442968 - MGP_C3HHeJ_P0054912 Mettl8 protein_coding protein_coding MGP_C3HHeJ_T0054913.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70347907 70355186 - MGP_C3HHeJ_P0054913 Mettl8 protein_coding protein_coding MGP_C3HHeJ_T0054914.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70348225 70364525 - MGP_C3HHeJ_P0054914 Mettl8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054915.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70348792 70357976 - Mettl8 protein_coding retained_intron MGP_C3HHeJ_T0054916.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70361299 70442957 - MGP_C3HHeJ_P0054916 Mettl8 protein_coding protein_coding MGP_C3HHeJ_T0054917.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70363393 70442968 - Mettl8 protein_coding retained_intron MGP_C3HHeJ_T0054918.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70375656 70402740 - Mettl8 protein_coding retained_intron MGP_C3HHeJ_T0057805.1 MGP_C3HHeJ_G0026330.1 mouse_genomes_project 2 151560109 151599887 - MGP_C3HHeJ_P0057805 Napb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057806.1 MGP_C3HHeJ_G0026330.1 mouse_genomes_project 2 151560109 151599941 - MGP_C3HHeJ_P0057806 Napb protein_coding protein_coding MGP_C3HHeJ_T0057807.1 MGP_C3HHeJ_G0026330.1 mouse_genomes_project 2 151572542 151599865 - Napb protein_coding retained_intron MGP_C3HHeJ_T0098401.1 MGP_C3HHeJ_G0036607.1 mouse_genomes_project 2 148072724 148115392 + Gm14093 sense_intronic sense_intronic MGP_C3HHeJ_T0056728.1 MGP_C3HHeJ_G0026090.1 mouse_genomes_project 2 122217099 122222391 - MGP_C3HHeJ_P0056728 Lrrc57 protein_coding protein_coding MGP_C3HHeJ_T0056729.1 MGP_C3HHeJ_G0026090.1 mouse_genomes_project 2 122217099 122222226 - MGP_C3HHeJ_P0056729 Lrrc57 protein_coding protein_coding MGP_C3HHeJ_T0056730.1 MGP_C3HHeJ_G0026090.1 mouse_genomes_project 2 122217099 122222381 - MGP_C3HHeJ_P0056730 Lrrc57 protein_coding protein_coding MGP_C3HHeJ_T0056731.1 MGP_C3HHeJ_G0026090.1 mouse_genomes_project 2 122217099 122222186 - MGP_C3HHeJ_P0056731 Lrrc57 protein_coding protein_coding MGP_C3HHeJ_T0056732.1 MGP_C3HHeJ_G0026090.1 mouse_genomes_project 2 122217681 122220843 - MGP_C3HHeJ_P0056732 Lrrc57 protein_coding protein_coding MGP_C3HHeJ_T0056733.1 MGP_C3HHeJ_G0026090.1 mouse_genomes_project 2 122218854 122222379 - MGP_C3HHeJ_P0056733 Lrrc57 protein_coding protein_coding MGP_C3HHeJ_T0056734.1 MGP_C3HHeJ_G0026090.1 mouse_genomes_project 2 122221688 122222173 - Lrrc57 protein_coding retained_intron MGP_C3HHeJ_T0017622.1 MGP_C3HHeJ_G0015221.1 mouse_genomes_project 2 119730344 119758661 - Gm29232 processed_transcript processed_transcript MGP_C3HHeJ_T0010301.1 MGP_C3HHeJ_G0008434.1 mouse_genomes_project 2 24337174 24337232 - Mir126b miRNA miRNA MGP_C3HHeJ_T0013327.1 MGP_C3HHeJ_G0011431.1 mouse_genomes_project 2 23697393 23698030 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013638.1 MGP_C3HHeJ_G0011742.1 mouse_genomes_project 2 145810526 145811146 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098248.1 MGP_C3HHeJ_G0036460.1 mouse_genomes_project 2 133640952 133641254 - Gm22902 ribozyme ribozyme MGP_C3HHeJ_T0057119.1 MGP_C3HHeJ_G0026168.1 mouse_genomes_project 2 129164775 129195629 - MGP_C3HHeJ_P0057119 Ncaph protein_coding protein_coding MGP_C3HHeJ_T0057120.1 MGP_C3HHeJ_G0026168.1 mouse_genomes_project 2 129164793 129174833 - Ncaph protein_coding retained_intron MGP_C3HHeJ_T0057121.1 MGP_C3HHeJ_G0026168.1 mouse_genomes_project 2 129164916 129195577 - MGP_C3HHeJ_P0057121 Ncaph protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057122.1 MGP_C3HHeJ_G0026168.1 mouse_genomes_project 2 129168751 129177882 - Ncaph protein_coding retained_intron MGP_C3HHeJ_T0057123.1 MGP_C3HHeJ_G0026168.1 mouse_genomes_project 2 129182518 129183666 - Ncaph protein_coding retained_intron MGP_C3HHeJ_T0057124.1 MGP_C3HHeJ_G0026168.1 mouse_genomes_project 2 129189298 129195572 - Ncaph protein_coding processed_transcript MGP_C3HHeJ_T0052319.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10399375 10605370 - MGP_C3HHeJ_P0052319 Rsu1 protein_coding protein_coding MGP_C3HHeJ_T0052320.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10399566 10605452 - MGP_C3HHeJ_P0052320 Rsu1 protein_coding protein_coding MGP_C3HHeJ_T0052321.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10399749 10605431 - MGP_C3HHeJ_P0052321 Rsu1 protein_coding protein_coding MGP_C3HHeJ_T0052322.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10496527 10605345 - Rsu1 protein_coding retained_intron MGP_C3HHeJ_T0052323.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10550591 10605370 - Rsu1 protein_coding retained_intron MGP_C3HHeJ_T0052324.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10551361 10605307 - MGP_C3HHeJ_P0052324 Rsu1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052325.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10553184 10605258 - Rsu1 protein_coding retained_intron MGP_C3HHeJ_T0052326.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10553697 10605328 - MGP_C3HHeJ_P0052326 Rsu1 protein_coding protein_coding MGP_C3HHeJ_T0052327.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10601497 10605348 - Rsu1 protein_coding retained_intron MGP_C3HHeJ_T0052328.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10604796 10605333 - Rsu1 protein_coding retained_intron MGP_C3HHeJ_T0007112.1 MGP_C3HHeJ_G0005826.1 mouse_genomes_project 2 44983823 45010526 - Gm13470 lincRNA lincRNA MGP_C3HHeJ_T0004088.1 MGP_C3HHeJ_G0003611.1 mouse_genomes_project 2 168507735 168525984 - Gm11457 antisense antisense MGP_C3HHeJ_T0004089.1 MGP_C3HHeJ_G0003611.1 mouse_genomes_project 2 168507745 168525989 - Gm11457 antisense antisense MGP_C3HHeJ_T0004090.1 MGP_C3HHeJ_G0003611.1 mouse_genomes_project 2 168507757 168526031 - Gm11457 antisense antisense MGP_C3HHeJ_T0055006.1 MGP_C3HHeJ_G0025564.1 mouse_genomes_project 2 72458787 72474414 - MGP_C3HHeJ_P0055006 Gm11084 protein_coding protein_coding MGP_C3HHeJ_T0055504.1 MGP_C3HHeJ_G0025744.1 mouse_genomes_project 2 87720371 87721298 - MGP_C3HHeJ_P0055504 Olfr1132 protein_coding protein_coding MGP_C3HHeJ_T0004044.1 MGP_C3HHeJ_G0003574.1 mouse_genomes_project 2 147040410 147041591 + 1700108N11Rik antisense antisense MGP_C3HHeJ_T0055017.1 MGP_C3HHeJ_G0025568.1 mouse_genomes_project 2 72823031 72848930 + MGP_C3HHeJ_P0055017 Scrn3 protein_coding protein_coding MGP_C3HHeJ_T0055018.1 MGP_C3HHeJ_G0025568.1 mouse_genomes_project 2 72823084 72831236 + MGP_C3HHeJ_P0055018 Scrn3 protein_coding protein_coding MGP_C3HHeJ_T0055019.1 MGP_C3HHeJ_G0025568.1 mouse_genomes_project 2 72823089 72826241 + Scrn3 protein_coding processed_transcript MGP_C3HHeJ_T0055020.1 MGP_C3HHeJ_G0025568.1 mouse_genomes_project 2 72823089 72840914 + Scrn3 protein_coding processed_transcript MGP_C3HHeJ_T0055021.1 MGP_C3HHeJ_G0025568.1 mouse_genomes_project 2 72823106 72832462 + Scrn3 protein_coding processed_transcript MGP_C3HHeJ_T0055022.1 MGP_C3HHeJ_G0025568.1 mouse_genomes_project 2 72829839 72847411 + Scrn3 protein_coding processed_transcript MGP_C3HHeJ_T0052818.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23067431 23076371 + Npdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052819.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23068549 23078209 + Npdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052820.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23073101 23079495 + MGP_C3HHeJ_P0052820 Npdc1 protein_coding protein_coding MGP_C3HHeJ_T0052821.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23073137 23076879 + Npdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052822.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23073199 23077878 + MGP_C3HHeJ_P0052822 Npdc1 protein_coding protein_coding MGP_C3HHeJ_T0052823.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23073201 23079495 + MGP_C3HHeJ_P0052823 Npdc1 protein_coding protein_coding MGP_C3HHeJ_T0052824.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23073224 23078346 + MGP_C3HHeJ_P0052824 Npdc1 protein_coding protein_coding MGP_C3HHeJ_T0052825.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23073269 23077142 + Npdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052826.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23073478 23078034 + Npdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052827.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23074115 23079492 + Npdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052828.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23076337 23079495 + MGP_C3HHeJ_P0052828 Npdc1 protein_coding protein_coding MGP_C3HHeJ_T0052829.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23077312 23079257 + Npdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052830.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23077722 23079489 + Npdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052831.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23078873 23079492 + Npdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052388.1 MGP_C3HHeJ_G0025101.1 mouse_genomes_project 2 13762731 14169274 + MGP_C3HHeJ_P0052388 Plxdc2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0052389.1 MGP_C3HHeJ_G0025101.1 mouse_genomes_project 2 13763573 14169656 + MGP_C3HHeJ_P0052389 Plxdc2 protein_coding protein_coding MGP_C3HHeJ_T0052390.1 MGP_C3HHeJ_G0025101.1 mouse_genomes_project 2 13763803 14169824 + MGP_C3HHeJ_P0052390 Plxdc2 protein_coding protein_coding MGP_C3HHeJ_T0052391.1 MGP_C3HHeJ_G0025101.1 mouse_genomes_project 2 14046411 14169657 + Plxdc2 protein_coding processed_transcript MGP_C3HHeJ_T0010327.1 MGP_C3HHeJ_G0008460.1 mouse_genomes_project 2 40878675 40878805 - Mir6336 miRNA miRNA MGP_C3HHeJ_T0058264.1 MGP_C3HHeJ_G0026460.1 mouse_genomes_project 2 159046904 159051214 + MGP_C3HHeJ_P0058264 Procr protein_coding protein_coding MGP_C3HHeJ_T0058265.1 MGP_C3HHeJ_G0026460.1 mouse_genomes_project 2 159046910 159050072 + MGP_C3HHeJ_P0058265 Procr protein_coding protein_coding MGP_C3HHeJ_T0058266.1 MGP_C3HHeJ_G0026460.1 mouse_genomes_project 2 159046937 159049539 + Procr protein_coding retained_intron MGP_C3HHeJ_T0058267.1 MGP_C3HHeJ_G0026460.1 mouse_genomes_project 2 159047130 159051211 + Procr protein_coding processed_transcript MGP_C3HHeJ_T0058652.1 MGP_C3HHeJ_G0026525.1 mouse_genomes_project 2 164454381 164481815 + MGP_C3HHeJ_P0058652 Lpin3 protein_coding protein_coding MGP_C3HHeJ_T0058653.1 MGP_C3HHeJ_G0026525.1 mouse_genomes_project 2 164461791 164481820 + MGP_C3HHeJ_P0058653 Lpin3 protein_coding protein_coding MGP_C3HHeJ_T0058654.1 MGP_C3HHeJ_G0026525.1 mouse_genomes_project 2 164461791 164481820 + MGP_C3HHeJ_P0058654 Lpin3 protein_coding protein_coding MGP_C3HHeJ_T0058655.1 MGP_C3HHeJ_G0026525.1 mouse_genomes_project 2 164461854 164481610 + MGP_C3HHeJ_P0058655 Lpin3 protein_coding protein_coding MGP_C3HHeJ_T0058656.1 MGP_C3HHeJ_G0026525.1 mouse_genomes_project 2 164477366 164479555 + Lpin3 protein_coding processed_transcript MGP_C3HHeJ_T0056634.1 MGP_C3HHeJ_G0026077.1 mouse_genomes_project 2 121599913 121616418 + MGP_C3HHeJ_P0056634 Gm28042 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056636.1 MGP_C3HHeJ_G0026077.1 mouse_genomes_project 2 121599924 121616418 + MGP_C3HHeJ_P0056636 Gm28042 protein_coding protein_coding MGP_C3HHeJ_T0056637.1 MGP_C3HHeJ_G0026077.1 mouse_genomes_project 2 121599927 121613851 + MGP_C3HHeJ_P0056637 Gm28042 protein_coding protein_coding MGP_C3HHeJ_T0056641.1 MGP_C3HHeJ_G0026077.1 mouse_genomes_project 2 121604125 121607263 + MGP_C3HHeJ_P0056641 Gm28042 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058146.1 MGP_C3HHeJ_G0026435.1 mouse_genomes_project 2 157756657 157760501 + 1700003F12Rik protein_coding retained_intron MGP_C3HHeJ_T0058148.1 MGP_C3HHeJ_G0026435.1 mouse_genomes_project 2 157759570 157760686 + MGP_C3HHeJ_P0058148 1700003F12Rik protein_coding protein_coding MGP_C3HHeJ_T0058149.1 MGP_C3HHeJ_G0026435.1 mouse_genomes_project 2 157759609 157760686 + MGP_C3HHeJ_P0058149 1700003F12Rik protein_coding protein_coding MGP_C3HHeJ_T0013707.1 MGP_C3HHeJ_G0011811.1 mouse_genomes_project 2 166546762 166547452 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010359.1 MGP_C3HHeJ_G0008492.1 mouse_genomes_project 2 113869712 113869834 + Gm44374 miRNA miRNA MGP_C3HHeJ_T0056438.1 MGP_C3HHeJ_G0026029.1 mouse_genomes_project 2 118659672 118670101 + Fam98b protein_coding retained_intron MGP_C3HHeJ_T0056439.1 MGP_C3HHeJ_G0026029.1 mouse_genomes_project 2 118659672 118682892 + MGP_C3HHeJ_P0056439 Fam98b protein_coding protein_coding MGP_C3HHeJ_T0056440.1 MGP_C3HHeJ_G0026029.1 mouse_genomes_project 2 118668638 118670099 + Fam98b protein_coding processed_transcript MGP_C3HHeJ_T0056925.1 MGP_C3HHeJ_G0026120.1 mouse_genomes_project 2 123646396 123648992 - MGP_C3HHeJ_P0056925 protein_coding protein_coding MGP_C3HHeJ_T0100483.1 MGP_C3HHeJ_G0038677.1 mouse_genomes_project 2 132241127 132241256 + snoRNA snoRNA MGP_C3HHeJ_T0052242.1 MGP_C3HHeJ_G0025078.1 mouse_genomes_project 2 8884911 8885570 - MGP_C3HHeJ_P0052242 Gm17490 protein_coding protein_coding MGP_C3HHeJ_T0055225.1 MGP_C3HHeJ_G0025611.1 mouse_genomes_project 2 79333153 79371554 + MGP_C3HHeJ_P0055225 Ssfa2 protein_coding protein_coding MGP_C3HHeJ_T0055226.1 MGP_C3HHeJ_G0025611.1 mouse_genomes_project 2 79333338 79371554 + MGP_C3HHeJ_P0055226 Ssfa2 protein_coding protein_coding MGP_C3HHeJ_T0055227.1 MGP_C3HHeJ_G0025611.1 mouse_genomes_project 2 79333367 79371554 + MGP_C3HHeJ_P0055227 Ssfa2 protein_coding protein_coding MGP_C3HHeJ_T0055228.1 MGP_C3HHeJ_G0025611.1 mouse_genomes_project 2 79333373 79334358 + Ssfa2 protein_coding processed_transcript MGP_C3HHeJ_T0055229.1 MGP_C3HHeJ_G0025611.1 mouse_genomes_project 2 79337105 79371554 + Ssfa2 protein_coding processed_transcript MGP_C3HHeJ_T0013458.1 MGP_C3HHeJ_G0011562.1 mouse_genomes_project 2 72675379 72675724 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055462.1 MGP_C3HHeJ_G0025711.1 mouse_genomes_project 2 86785115 86786122 - MGP_C3HHeJ_P0055462 protein_coding protein_coding MGP_C3HHeJ_T0007210.1 MGP_C3HHeJ_G0005908.1 mouse_genomes_project 2 116135823 116367233 + lincRNA lincRNA MGP_C3HHeJ_T0013295.1 MGP_C3HHeJ_G0011399.1 mouse_genomes_project 2 14397924 14398935 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056330.1 MGP_C3HHeJ_G0025990.1 mouse_genomes_project 2 112979346 112980294 + MGP_C3HHeJ_P0056330 Olfr1302 protein_coding protein_coding MGP_C3HHeJ_T0059462.1 MGP_C3HHeJ_G0026727.1 mouse_genomes_project 2 185752115 185761487 - MGP_C3HHeJ_P0059462 Eef1a2 protein_coding protein_coding MGP_C3HHeJ_T0054684.1 MGP_C3HHeJ_G0025504.1 mouse_genomes_project 2 61616407 61666571 - MGP_C3HHeJ_P0054684 Ifih1 protein_coding protein_coding MGP_C3HHeJ_T0054685.1 MGP_C3HHeJ_G0025504.1 mouse_genomes_project 2 61618056 61666513 - MGP_C3HHeJ_P0054685 Ifih1 protein_coding protein_coding MGP_C3HHeJ_T0054686.1 MGP_C3HHeJ_G0025504.1 mouse_genomes_project 2 61628779 61666615 - Ifih1 protein_coding retained_intron MGP_C3HHeJ_T0054687.1 MGP_C3HHeJ_G0025504.1 mouse_genomes_project 2 61649964 61659830 - Ifih1 protein_coding processed_transcript MGP_C3HHeJ_T0054688.1 MGP_C3HHeJ_G0025504.1 mouse_genomes_project 2 61653999 61666518 - Ifih1 protein_coding retained_intron MGP_C3HHeJ_T0098113.1 MGP_C3HHeJ_G0036325.1 mouse_genomes_project 2 148087742 148087836 + Gm22731 rRNA rRNA MGP_C3HHeJ_T0007134.1 MGP_C3HHeJ_G0005846.1 mouse_genomes_project 2 66390251 66401317 + Gm1322 lincRNA lincRNA MGP_C3HHeJ_T0013329.1 MGP_C3HHeJ_G0011433.1 mouse_genomes_project 2 24465549 24466244 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098107.1 MGP_C3HHeJ_G0036319.1 mouse_genomes_project 2 106807757 106807873 + n-R5s201 rRNA rRNA MGP_C3HHeJ_T0055374.1 MGP_C3HHeJ_G0025647.1 mouse_genomes_project 2 84727208 84730392 + MGP_C3HHeJ_P0055374 Prg2 protein_coding protein_coding MGP_C3HHeJ_T0058780.1 MGP_C3HHeJ_G0026566.1 mouse_genomes_project 2 168112903 168128823 - MGP_C3HHeJ_P0058780 Matn4 protein_coding protein_coding MGP_C3HHeJ_T0058781.1 MGP_C3HHeJ_G0026566.1 mouse_genomes_project 2 168112903 168128825 - MGP_C3HHeJ_P0058781 Matn4 protein_coding protein_coding MGP_C3HHeJ_T0058782.1 MGP_C3HHeJ_G0026566.1 mouse_genomes_project 2 168112903 168129371 - MGP_C3HHeJ_P0058782 Matn4 protein_coding protein_coding MGP_C3HHeJ_T0058783.1 MGP_C3HHeJ_G0026566.1 mouse_genomes_project 2 168112903 168128823 - MGP_C3HHeJ_P0058783 Matn4 protein_coding protein_coding MGP_C3HHeJ_T0058784.1 MGP_C3HHeJ_G0026566.1 mouse_genomes_project 2 168118211 168128824 - Matn4 protein_coding retained_intron MGP_C3HHeJ_T0054239.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36101771 36598453 - MGP_C3HHeJ_P0054239 Dennd1a protein_coding protein_coding MGP_C3HHeJ_T0054240.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36103852 36155209 - MGP_C3HHeJ_P0054240 Dennd1a protein_coding protein_coding MGP_C3HHeJ_T0054241.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36119698 36598468 - MGP_C3HHeJ_P0054241 Dennd1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054242.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36241472 36598455 - MGP_C3HHeJ_P0054242 Dennd1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054243.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36241517 36598266 - MGP_C3HHeJ_P0054243 Dennd1a protein_coding protein_coding MGP_C3HHeJ_T0054244.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36327376 36470036 - Dennd1a protein_coding retained_intron MGP_C3HHeJ_T0054245.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36347546 36598436 - MGP_C3HHeJ_P0054245 Dennd1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054246.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36430616 36598296 - MGP_C3HHeJ_P0054246 Dennd1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054247.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36463209 36549891 - Dennd1a protein_coding retained_intron MGP_C3HHeJ_T0054248.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36467692 36471774 - Dennd1a protein_coding retained_intron MGP_C3HHeJ_T0054249.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36543786 36598292 - Dennd1a protein_coding retained_intron MGP_C3HHeJ_T0101174.1 MGP_C3HHeJ_G0039323.1 mouse_genomes_project 2 74391431 74392037 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0052469.1 MGP_C3HHeJ_G0025115.1 mouse_genomes_project 2 16958084 16959923 + MGP_C3HHeJ_P0052469 Ptf1a protein_coding protein_coding MGP_C3HHeJ_T0007350.1 MGP_C3HHeJ_G0006024.1 mouse_genomes_project 2 185403392 185409667 - Gm14340 lincRNA lincRNA MGP_C3HHeJ_T0013523.1 MGP_C3HHeJ_G0011627.1 mouse_genomes_project 2 94282992 94283503 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059155.1 MGP_C3HHeJ_G0026649.1 mouse_genomes_project 2 173657918 173663741 - MGP_C3HHeJ_P0059155 Gm11011 protein_coding protein_coding MGP_C3HHeJ_T0003997.1 MGP_C3HHeJ_G0003542.1 mouse_genomes_project 2 121597268 121599874 - Gm13999 antisense antisense MGP_C3HHeJ_T0013664.1 MGP_C3HHeJ_G0011768.1 mouse_genomes_project 2 153003748 153004743 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056377.1 MGP_C3HHeJ_G0026015.1 mouse_genomes_project 2 114590593 114991031 + MGP_C3HHeJ_P0056377 Fmn1 protein_coding protein_coding MGP_C3HHeJ_T0056378.1 MGP_C3HHeJ_G0026015.1 mouse_genomes_project 2 114590628 114761909 + Fmn1 protein_coding processed_transcript MGP_C3HHeJ_T0056379.1 MGP_C3HHeJ_G0026015.1 mouse_genomes_project 2 114590639 114984135 + MGP_C3HHeJ_P0056379 Fmn1 protein_coding protein_coding MGP_C3HHeJ_T0056380.1 MGP_C3HHeJ_G0026015.1 mouse_genomes_project 2 114625219 114983886 + MGP_C3HHeJ_P0056380 Fmn1 protein_coding protein_coding MGP_C3HHeJ_T0056381.1 MGP_C3HHeJ_G0026015.1 mouse_genomes_project 2 114704955 114984135 + MGP_C3HHeJ_P0056381 Fmn1 protein_coding protein_coding MGP_C3HHeJ_T0056382.1 MGP_C3HHeJ_G0026015.1 mouse_genomes_project 2 114956369 114964386 + Fmn1 protein_coding processed_transcript MGP_C3HHeJ_T0056383.1 MGP_C3HHeJ_G0026015.1 mouse_genomes_project 2 114956384 114984132 + Fmn1 protein_coding processed_transcript MGP_C3HHeJ_T0056384.1 MGP_C3HHeJ_G0026015.1 mouse_genomes_project 2 114956384 114984014 + Fmn1 protein_coding processed_transcript MGP_C3HHeJ_T0056385.1 MGP_C3HHeJ_G0026015.1 mouse_genomes_project 2 114982950 114984010 + Fmn1 protein_coding processed_transcript MGP_C3HHeJ_T0004073.1 MGP_C3HHeJ_G0003601.1 mouse_genomes_project 2 164312402 164320385 - Gm27206 antisense antisense MGP_C3HHeJ_T0055452.1 MGP_C3HHeJ_G0025702.1 mouse_genomes_project 2 86399591 86400533 + MGP_C3HHeJ_P0055452 Olfr1076 protein_coding protein_coding MGP_C3HHeJ_T0101898.1 MGP_C3HHeJ_G0039863.1 mouse_genomes_project 2 86378928 86379815 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013731.1 MGP_C3HHeJ_G0011835.1 mouse_genomes_project 2 183529521 183530536 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007278.1 MGP_C3HHeJ_G0005962.1 mouse_genomes_project 2 155776127 155778086 - Gm26841 lincRNA lincRNA MGP_C3HHeJ_T0013490.1 MGP_C3HHeJ_G0011594.1 mouse_genomes_project 2 83342513 83342654 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013408.1 MGP_C3HHeJ_G0011512.1 mouse_genomes_project 2 54918520 54918753 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054572.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58791003 58823140 - MGP_C3HHeJ_P0054572 Wdsub1 protein_coding protein_coding MGP_C3HHeJ_T0054573.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58793825 58823103 - MGP_C3HHeJ_P0054573 Wdsub1 protein_coding protein_coding MGP_C3HHeJ_T0054574.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58799962 58801365 - Wdsub1 protein_coding processed_transcript MGP_C3HHeJ_T0054575.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58799971 58800319 - Wdsub1 protein_coding processed_transcript MGP_C3HHeJ_T0054576.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58800199 58817398 - MGP_C3HHeJ_P0054576 Wdsub1 protein_coding protein_coding MGP_C3HHeJ_T0054577.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58800326 58802200 - Wdsub1 protein_coding processed_transcript MGP_C3HHeJ_T0054578.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58801311 58823113 - Wdsub1 protein_coding processed_transcript MGP_C3HHeJ_T0054579.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58810884 58818720 - MGP_C3HHeJ_P0054579 Wdsub1 protein_coding protein_coding MGP_C3HHeJ_T0054580.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58813590 58818902 - Wdsub1 protein_coding processed_transcript MGP_C3HHeJ_T0054581.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58817222 58823142 - MGP_C3HHeJ_P0054581 Wdsub1 protein_coding protein_coding MGP_C3HHeJ_T0054582.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58817223 58823130 - MGP_C3HHeJ_P0054582 Wdsub1 protein_coding protein_coding MGP_C3HHeJ_T0054583.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58818887 58823147 - Wdsub1 protein_coding processed_transcript MGP_C3HHeJ_T0007255.1 MGP_C3HHeJ_G0005943.1 mouse_genomes_project 2 138193895 138194878 - Gm14210 lincRNA lincRNA MGP_C3HHeJ_T0007261.1 MGP_C3HHeJ_G0005949.1 mouse_genomes_project 2 146864524 146884430 - lincRNA lincRNA MGP_C3HHeJ_T0007262.1 MGP_C3HHeJ_G0005949.1 mouse_genomes_project 2 146865689 146874262 - lincRNA lincRNA MGP_C3HHeJ_T0057976.1 MGP_C3HHeJ_G0026390.1 mouse_genomes_project 2 155703265 155703987 - MGP_C3HHeJ_P0057976 Defb25 protein_coding protein_coding MGP_C3HHeJ_T0011423.1 MGP_C3HHeJ_G0009556.1 mouse_genomes_project 2 159701545 159701761 + Gm22316 misc_RNA misc_RNA MGP_C3HHeJ_T0007041.1 MGP_C3HHeJ_G0005773.1 mouse_genomes_project 2 2162676 2266738 - Gm26776 lincRNA lincRNA MGP_C3HHeJ_T0057589.1 MGP_C3HHeJ_G0026276.1 mouse_genomes_project 2 138467928 138791521 - MGP_C3HHeJ_P0057589 Pak7 protein_coding protein_coding MGP_C3HHeJ_T0057590.1 MGP_C3HHeJ_G0026276.1 mouse_genomes_project 2 138468721 138791543 - MGP_C3HHeJ_P0057590 Pak7 protein_coding protein_coding MGP_C3HHeJ_T0057591.1 MGP_C3HHeJ_G0026276.1 mouse_genomes_project 2 138664650 138791550 - Pak7 protein_coding retained_intron MGP_C3HHeJ_T0055438.1 MGP_C3HHeJ_G0025688.1 mouse_genomes_project 2 86039657 86042191 - MGP_C3HHeJ_P0055438 Olfr1045 protein_coding protein_coding MGP_C3HHeJ_T0007296.1 MGP_C3HHeJ_G0005977.1 mouse_genomes_project 2 164943316 164944256 + Gm14241 lincRNA lincRNA MGP_C3HHeJ_T0055807.1 MGP_C3HHeJ_G0025872.1 mouse_genomes_project 2 91895208 91990449 + MGP_C3HHeJ_P0055807 Ckap5 protein_coding protein_coding MGP_C3HHeJ_T0055808.1 MGP_C3HHeJ_G0025872.1 mouse_genomes_project 2 91895424 91923390 + Ckap5 protein_coding processed_transcript MGP_C3HHeJ_T0055809.1 MGP_C3HHeJ_G0025872.1 mouse_genomes_project 2 91914302 91933685 + Ckap5 protein_coding retained_intron MGP_C3HHeJ_T0055810.1 MGP_C3HHeJ_G0025872.1 mouse_genomes_project 2 91914304 91990447 + MGP_C3HHeJ_P0055810 Ckap5 protein_coding protein_coding MGP_C3HHeJ_T0055811.1 MGP_C3HHeJ_G0025872.1 mouse_genomes_project 2 91914304 91990447 + MGP_C3HHeJ_P0055811 Ckap5 protein_coding protein_coding MGP_C3HHeJ_T0055812.1 MGP_C3HHeJ_G0025872.1 mouse_genomes_project 2 91914315 91990448 + MGP_C3HHeJ_P0055812 Ckap5 protein_coding protein_coding MGP_C3HHeJ_T0055813.1 MGP_C3HHeJ_G0025872.1 mouse_genomes_project 2 91923265 91933688 + Ckap5 protein_coding retained_intron MGP_C3HHeJ_T0055814.1 MGP_C3HHeJ_G0025872.1 mouse_genomes_project 2 91964760 91976330 + Ckap5 protein_coding processed_transcript MGP_C3HHeJ_T0055815.1 MGP_C3HHeJ_G0025872.1 mouse_genomes_project 2 91966083 91970687 + Ckap5 protein_coding retained_intron MGP_C3HHeJ_T0053076.1 MGP_C3HHeJ_G0025226.1 mouse_genomes_project 2 24332448 24382295 + MGP_C3HHeJ_P0053076 Gm20532 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053238.1 MGP_C3HHeJ_G0025258.1 mouse_genomes_project 2 26328502 26328871 + MGP_C3HHeJ_P0053238 Gm10134 protein_coding protein_coding MGP_C3HHeJ_T0013457.1 MGP_C3HHeJ_G0011561.1 mouse_genomes_project 2 72629101 72629900 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013607.1 MGP_C3HHeJ_G0011711.1 mouse_genomes_project 2 132260260 132261580 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057972.1 MGP_C3HHeJ_G0026387.1 mouse_genomes_project 2 155652114 155656939 - MGP_C3HHeJ_P0057972 Defb19 protein_coding protein_coding MGP_C3HHeJ_T0007352.1 MGP_C3HHeJ_G0006026.1 mouse_genomes_project 2 185424920 185438223 + Gm14344 lincRNA lincRNA MGP_C3HHeJ_T0054172.1 MGP_C3HHeJ_G0025401.1 mouse_genomes_project 2 34756303 34757245 - MGP_C3HHeJ_P0054172 Olfr341 protein_coding protein_coding MGP_C3HHeJ_T0052426.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15655592 15679494 - MGP_C3HHeJ_P0052426 Dnajc1 protein_coding protein_coding MGP_C3HHeJ_T0052427.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15666271 15873644 - MGP_C3HHeJ_P0052427 Dnajc1 protein_coding protein_coding MGP_C3HHeJ_T0052428.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15669167 15676839 - Dnajc1 protein_coding processed_transcript MGP_C3HHeJ_T0052429.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15673685 15873663 - MGP_C3HHeJ_P0052429 Dnajc1 protein_coding protein_coding MGP_C3HHeJ_T0052430.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15677071 15873475 - MGP_C3HHeJ_P0052430 Dnajc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052431.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15677071 15873253 - MGP_C3HHeJ_P0052431 Dnajc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052432.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15677091 15873254 - MGP_C3HHeJ_P0052432 Dnajc1 protein_coding protein_coding MGP_C3HHeJ_T0052433.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15679467 15769354 - MGP_C3HHeJ_P0052433 Dnajc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052434.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15768975 15772596 - Dnajc1 protein_coding retained_intron MGP_C3HHeJ_T0052435.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15770922 15873657 - Dnajc1 protein_coding processed_transcript MGP_C3HHeJ_T0052436.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15780563 15873663 - Dnajc1 protein_coding retained_intron MGP_C3HHeJ_T0004067.1 MGP_C3HHeJ_G0003595.1 mouse_genomes_project 2 159653915 159660942 - Gm14252 antisense antisense MGP_C3HHeJ_T0013274.1 MGP_C3HHeJ_G0011378.1 mouse_genomes_project 2 5244063 5244717 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055180.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77043609 77358240 - MGP_C3HHeJ_P0055180 Zfp385b protein_coding protein_coding MGP_C3HHeJ_T0055181.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77043609 77155427 - MGP_C3HHeJ_P0055181 Zfp385b protein_coding protein_coding MGP_C3HHeJ_T0055182.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77043609 77340268 - MGP_C3HHeJ_P0055182 Zfp385b protein_coding protein_coding MGP_C3HHeJ_T0055183.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77044075 77460291 - MGP_C3HHeJ_P0055183 Zfp385b protein_coding protein_coding MGP_C3HHeJ_T0055184.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77048889 77155423 - Zfp385b protein_coding processed_transcript MGP_C3HHeJ_T0055185.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77083860 77340268 - Zfp385b protein_coding processed_transcript MGP_C3HHeJ_T0055186.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77106529 77155344 - Zfp385b protein_coding processed_transcript MGP_C3HHeJ_T0055187.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77137442 77340375 - Zfp385b protein_coding processed_transcript MGP_C3HHeJ_T0055188.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77163033 77460734 - MGP_C3HHeJ_P0055188 Zfp385b protein_coding protein_coding MGP_C3HHeJ_T0055189.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77163784 77198505 - Zfp385b protein_coding processed_transcript MGP_C3HHeJ_T0055190.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77460711 77463110 - Zfp385b protein_coding processed_transcript MGP_C3HHeJ_T0053474.1 MGP_C3HHeJ_G0025295.1 mouse_genomes_project 2 28183265 28226971 + MGP_C3HHeJ_P0053474 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058442.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 159939652 160098307 + MGP_C3HHeJ_P0058442 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058443.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 159939652 160098309 + MGP_C3HHeJ_P0058443 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058444.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160027675 160097125 + MGP_C3HHeJ_P0058444 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058445.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160027675 160097120 + MGP_C3HHeJ_P0058445 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058446.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160048757 160082201 + MGP_C3HHeJ_P0058446 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058447.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160049216 160096671 + MGP_C3HHeJ_P0058447 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058448.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160049230 160097070 + MGP_C3HHeJ_P0058448 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058449.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160049231 160096901 + Dlgap4 protein_coding retained_intron MGP_C3HHeJ_T0058450.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160049242 160082442 + MGP_C3HHeJ_P0058450 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058451.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160049245 160082279 + MGP_C3HHeJ_P0058451 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058452.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160049247 160096790 + MGP_C3HHeJ_P0058452 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058453.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160049255 160096849 + MGP_C3HHeJ_P0058453 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058454.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160049677 160098309 + MGP_C3HHeJ_P0058454 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058455.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160093759 160096725 + Dlgap4 protein_coding processed_transcript MGP_C3HHeJ_T0100452.1 MGP_C3HHeJ_G0038646.1 mouse_genomes_project 2 45176238 45176355 - Gm25264 snoRNA snoRNA MGP_C3HHeJ_T0013617.1 MGP_C3HHeJ_G0011721.1 mouse_genomes_project 2 134159362 134160236 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003891.1 MGP_C3HHeJ_G0003471.1 mouse_genomes_project 2 36596384 36598369 + Gm13556 antisense antisense MGP_C3HHeJ_T0059287.1 MGP_C3HHeJ_G0026691.1 mouse_genomes_project 2 182603929 182834456 + MGP_C3HHeJ_P0059287 Phactr3 protein_coding protein_coding MGP_C3HHeJ_T0059288.1 MGP_C3HHeJ_G0026691.1 mouse_genomes_project 2 182604133 182832455 + MGP_C3HHeJ_P0059288 Phactr3 protein_coding protein_coding MGP_C3HHeJ_T0059289.1 MGP_C3HHeJ_G0026691.1 mouse_genomes_project 2 182627327 182832460 + MGP_C3HHeJ_P0059289 Phactr3 protein_coding protein_coding MGP_C3HHeJ_T0059290.1 MGP_C3HHeJ_G0026691.1 mouse_genomes_project 2 182661215 182832455 + MGP_C3HHeJ_P0059290 Phactr3 protein_coding protein_coding MGP_C3HHeJ_T0059291.1 MGP_C3HHeJ_G0026691.1 mouse_genomes_project 2 182823519 182827730 + Phactr3 protein_coding retained_intron MGP_C3HHeJ_T0059292.1 MGP_C3HHeJ_G0026691.1 mouse_genomes_project 2 182823755 182828794 + Phactr3 protein_coding retained_intron MGP_C3HHeJ_T0013683.1 MGP_C3HHeJ_G0011787.1 mouse_genomes_project 2 158826123 158826414 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052344.1 MGP_C3HHeJ_G0025092.1 mouse_genomes_project 2 11198342 11414336 - MGP_C3HHeJ_P0052344 Hacd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052345.1 MGP_C3HHeJ_G0025092.1 mouse_genomes_project 2 11386133 11414167 - MGP_C3HHeJ_P0052345 Hacd1 protein_coding protein_coding MGP_C3HHeJ_T0017533.1 MGP_C3HHeJ_G0015169.1 mouse_genomes_project 2 25812224 25817245 - Gm13372 processed_transcript processed_transcript MGP_C3HHeJ_T0058123.1 MGP_C3HHeJ_G0026431.1 mouse_genomes_project 2 157529867 157564548 - MGP_C3HHeJ_P0058123 Cdk5rap1 protein_coding protein_coding MGP_C3HHeJ_T0058124.1 MGP_C3HHeJ_G0026431.1 mouse_genomes_project 2 157529873 157564285 - MGP_C3HHeJ_P0058124 Cdk5rap1 protein_coding protein_coding MGP_C3HHeJ_T0058125.1 MGP_C3HHeJ_G0026431.1 mouse_genomes_project 2 157536746 157564327 - Cdk5rap1 protein_coding processed_transcript MGP_C3HHeJ_T0058126.1 MGP_C3HHeJ_G0026431.1 mouse_genomes_project 2 157545820 157549558 - Cdk5rap1 protein_coding retained_intron MGP_C3HHeJ_T0058127.1 MGP_C3HHeJ_G0026431.1 mouse_genomes_project 2 157551212 157564297 - MGP_C3HHeJ_P0058127 Cdk5rap1 protein_coding protein_coding MGP_C3HHeJ_T0058128.1 MGP_C3HHeJ_G0026431.1 mouse_genomes_project 2 157557418 157562363 - Cdk5rap1 protein_coding processed_transcript MGP_C3HHeJ_T0058129.1 MGP_C3HHeJ_G0026431.1 mouse_genomes_project 2 157562255 157564257 - Cdk5rap1 protein_coding processed_transcript MGP_C3HHeJ_T0101902.1 MGP_C3HHeJ_G0039867.1 mouse_genomes_project 2 86538966 86545268 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0058950.1 MGP_C3HHeJ_G0026609.1 mouse_genomes_project 2 169141592 169158980 - MGP_C3HHeJ_P0058950 Zfp663 protein_coding protein_coding MGP_C3HHeJ_T0058951.1 MGP_C3HHeJ_G0026609.1 mouse_genomes_project 2 169141593 169150446 - MGP_C3HHeJ_P0058951 Zfp663 protein_coding protein_coding MGP_C3HHeJ_T0058952.1 MGP_C3HHeJ_G0026609.1 mouse_genomes_project 2 169144106 169149711 - Zfp663 protein_coding processed_transcript MGP_C3HHeJ_T0058953.1 MGP_C3HHeJ_G0026609.1 mouse_genomes_project 2 169144339 169158974 - MGP_C3HHeJ_P0058953 Zfp663 protein_coding protein_coding MGP_C3HHeJ_T0003815.1 MGP_C3HHeJ_G0003412.1 mouse_genomes_project 2 1452823 1461060 - Gm13175 antisense antisense MGP_C3HHeJ_T0059293.1 MGP_C3HHeJ_G0026692.1 mouse_genomes_project 2 182841256 182909900 - MGP_C3HHeJ_P0059293 Sycp2 protein_coding protein_coding MGP_C3HHeJ_T0059294.1 MGP_C3HHeJ_G0026692.1 mouse_genomes_project 2 182842082 182872936 - Sycp2 protein_coding processed_transcript MGP_C3HHeJ_T0059295.1 MGP_C3HHeJ_G0026692.1 mouse_genomes_project 2 182867395 182873276 - Sycp2 protein_coding retained_intron MGP_C3HHeJ_T0059296.1 MGP_C3HHeJ_G0026692.1 mouse_genomes_project 2 182896296 182909637 - MGP_C3HHeJ_P0059296 Sycp2 protein_coding protein_coding MGP_C3HHeJ_T0010285.1 MGP_C3HHeJ_G0008418.1 mouse_genomes_project 2 7720228 7720318 + Gm24806 miRNA miRNA MGP_C3HHeJ_T0100440.1 MGP_C3HHeJ_G0038634.1 mouse_genomes_project 2 29195378 29195502 + Gm22516 snoRNA snoRNA MGP_C3HHeJ_T0058553.1 MGP_C3HHeJ_G0026504.1 mouse_genomes_project 2 161420958 161470757 - MGP_C3HHeJ_P0058553 Tti1 protein_coding protein_coding MGP_C3HHeJ_T0058554.1 MGP_C3HHeJ_G0026504.1 mouse_genomes_project 2 161420967 161448488 - MGP_C3HHeJ_P0058554 Tti1 protein_coding protein_coding MGP_C3HHeJ_T0058555.1 MGP_C3HHeJ_G0026504.1 mouse_genomes_project 2 161434434 161446338 - Tti1 protein_coding processed_transcript MGP_C3HHeJ_T0058556.1 MGP_C3HHeJ_G0026504.1 mouse_genomes_project 2 161447895 161451358 - MGP_C3HHeJ_P0058556 Tti1 protein_coding protein_coding MGP_C3HHeJ_T0055577.1 MGP_C3HHeJ_G0025810.1 mouse_genomes_project 2 89309951 89310887 - MGP_C3HHeJ_P0055577 Olfr1223 protein_coding protein_coding MGP_C3HHeJ_T0057239.1 MGP_C3HHeJ_G0026201.1 mouse_genomes_project 2 131188439 131219598 + MGP_C3HHeJ_P0057239 Ttl protein_coding protein_coding MGP_C3HHeJ_T0057240.1 MGP_C3HHeJ_G0026201.1 mouse_genomes_project 2 131188482 131190603 + Ttl protein_coding processed_transcript MGP_C3HHeJ_T0057241.1 MGP_C3HHeJ_G0026201.1 mouse_genomes_project 2 131198564 131213041 + MGP_C3HHeJ_P0057241 Ttl protein_coding protein_coding MGP_C3HHeJ_T0054236.1 MGP_C3HHeJ_G0025432.1 mouse_genomes_project 2 36076430 36101884 + MGP_C3HHeJ_P0054236 Crb2 protein_coding protein_coding MGP_C3HHeJ_T0054237.1 MGP_C3HHeJ_G0025432.1 mouse_genomes_project 2 36092648 36095001 + MGP_C3HHeJ_P0054237 Crb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054238.1 MGP_C3HHeJ_G0025432.1 mouse_genomes_project 2 36097947 36099397 + Crb2 protein_coding processed_transcript MGP_C3HHeJ_T0003821.1 MGP_C3HHeJ_G0003416.1 mouse_genomes_project 2 3223014 3357096 + A230108P19Rik antisense antisense MGP_C3HHeJ_T0059536.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186108514 186126473 + MGP_C3HHeJ_P0059536 Tpd52l2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059537.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186108536 186119645 + Tpd52l2 protein_coding processed_transcript MGP_C3HHeJ_T0059538.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186108537 186129324 + MGP_C3HHeJ_P0059538 Tpd52l2 protein_coding protein_coding MGP_C3HHeJ_T0059539.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186108553 186128729 + MGP_C3HHeJ_P0059539 Tpd52l2 protein_coding protein_coding MGP_C3HHeJ_T0059540.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186108555 186126484 + MGP_C3HHeJ_P0059540 Tpd52l2 protein_coding protein_coding MGP_C3HHeJ_T0059541.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186108559 186129320 + MGP_C3HHeJ_P0059541 Tpd52l2 protein_coding protein_coding MGP_C3HHeJ_T0059542.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186108571 186127614 + MGP_C3HHeJ_P0059542 Tpd52l2 protein_coding protein_coding MGP_C3HHeJ_T0059543.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186108601 186113935 + Tpd52l2 protein_coding retained_intron MGP_C3HHeJ_T0059544.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186108603 186126745 + MGP_C3HHeJ_P0059544 Tpd52l2 protein_coding protein_coding MGP_C3HHeJ_T0059545.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186111225 186124413 + MGP_C3HHeJ_P0059545 Tpd52l2 protein_coding protein_coding MGP_C3HHeJ_T0059546.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186111246 186114531 + Tpd52l2 protein_coding retained_intron MGP_C3HHeJ_T0059547.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186123934 186126691 + Tpd52l2 protein_coding retained_intron MGP_C3HHeJ_T0013640.1 MGP_C3HHeJ_G0011744.1 mouse_genomes_project 2 146046465 146046615 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010335.1 MGP_C3HHeJ_G0008468.1 mouse_genomes_project 2 72435962 72436087 - Gm25960 miRNA miRNA MGP_C3HHeJ_T0058504.1 MGP_C3HHeJ_G0026495.1 mouse_genomes_project 2 160592301 160681551 - MGP_C3HHeJ_P0058504 Mroh8 protein_coding protein_coding MGP_C3HHeJ_T0058505.1 MGP_C3HHeJ_G0026495.1 mouse_genomes_project 2 160594445 160680833 - MGP_C3HHeJ_P0058505 Mroh8 protein_coding unknown_likely_coding MGP_C3HHeJ_T0058506.1 MGP_C3HHeJ_G0026495.1 mouse_genomes_project 2 160606221 160607635 - Mroh8 protein_coding processed_transcript MGP_C3HHeJ_T0058507.1 MGP_C3HHeJ_G0026495.1 mouse_genomes_project 2 160637475 160681291 - Mroh8 protein_coding processed_transcript MGP_C3HHeJ_T0058508.1 MGP_C3HHeJ_G0026495.1 mouse_genomes_project 2 160650797 160654778 - Mroh8 protein_coding processed_transcript MGP_C3HHeJ_T0058509.1 MGP_C3HHeJ_G0026495.1 mouse_genomes_project 2 160666256 160681551 - Mroh8 protein_coding processed_transcript MGP_C3HHeJ_T0007106.1 MGP_C3HHeJ_G0005821.1 mouse_genomes_project 2 43677576 43690516 + Gm28643 lincRNA lincRNA MGP_C3HHeJ_T0010262.1 MGP_C3HHeJ_G0008395.1 mouse_genomes_project 2 7695221 7695325 + Mir297a-2 miRNA miRNA MGP_C3HHeJ_T0010371.1 MGP_C3HHeJ_G0008504.1 mouse_genomes_project 2 131044657 131044763 - Gm22859 miRNA miRNA MGP_C3HHeJ_T0017517.1 MGP_C3HHeJ_G0015160.1 mouse_genomes_project 2 16247279 16265451 - Gm20539 processed_transcript processed_transcript MGP_C3HHeJ_T0011428.1 MGP_C3HHeJ_G0009561.1 mouse_genomes_project 2 170966152 170966341 + Gm27494 misc_RNA misc_RNA MGP_C3HHeJ_T0053837.1 MGP_C3HHeJ_G0025345.1 mouse_genomes_project 2 30676276 30677777 - MGP_C3HHeJ_P0053837 9430097D07Rik protein_coding protein_coding MGP_C3HHeJ_T0055619.1 MGP_C3HHeJ_G0025840.1 mouse_genomes_project 2 90204696 90209783 + MGP_C3HHeJ_P0055619 Olfr1260 protein_coding protein_coding MGP_C3HHeJ_T0055620.1 MGP_C3HHeJ_G0025840.1 mouse_genomes_project 2 90204703 90209263 + Olfr1260 protein_coding processed_transcript MGP_C3HHeJ_T0055621.1 MGP_C3HHeJ_G0025840.1 mouse_genomes_project 2 90204706 90209213 + MGP_C3HHeJ_P0055621 Olfr1260 protein_coding protein_coding MGP_C3HHeJ_T0055622.1 MGP_C3HHeJ_G0025840.1 mouse_genomes_project 2 90204712 90209270 + Olfr1260 protein_coding processed_transcript MGP_C3HHeJ_T0055623.1 MGP_C3HHeJ_G0025840.1 mouse_genomes_project 2 90208850 90209783 + MGP_C3HHeJ_P0055623 Olfr1260 protein_coding protein_coding MGP_C3HHeJ_T0053350.1 MGP_C3HHeJ_G0025278.1 mouse_genomes_project 2 27687029 27698611 + MGP_C3HHeJ_P0053350 Coq4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053351.1 MGP_C3HHeJ_G0025278.1 mouse_genomes_project 2 27687756 27697269 + MGP_C3HHeJ_P0053351 Coq4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053352.1 MGP_C3HHeJ_G0025278.1 mouse_genomes_project 2 27687795 27698410 + MGP_C3HHeJ_P0053352 Coq4 protein_coding protein_coding MGP_C3HHeJ_T0053353.1 MGP_C3HHeJ_G0025278.1 mouse_genomes_project 2 27687807 27696669 + MGP_C3HHeJ_P0053353 Coq4 protein_coding protein_coding MGP_C3HHeJ_T0053354.1 MGP_C3HHeJ_G0025278.1 mouse_genomes_project 2 27689513 27690175 + Coq4 protein_coding retained_intron MGP_C3HHeJ_T0053355.1 MGP_C3HHeJ_G0025278.1 mouse_genomes_project 2 27696231 27697653 + Coq4 protein_coding retained_intron MGP_C3HHeJ_T0056800.1 MGP_C3HHeJ_G0026103.1 mouse_genomes_project 2 122793648 122803984 - MGP_C3HHeJ_P0056800 Zscan29 protein_coding protein_coding MGP_C3HHeJ_T0056801.1 MGP_C3HHeJ_G0026103.1 mouse_genomes_project 2 122793648 122802983 - MGP_C3HHeJ_P0056801 Zscan29 protein_coding protein_coding MGP_C3HHeJ_T0056802.1 MGP_C3HHeJ_G0026103.1 mouse_genomes_project 2 122794434 122797373 - Zscan29 protein_coding retained_intron MGP_C3HHeJ_T0054947.1 MGP_C3HHeJ_G0025554.1 mouse_genomes_project 2 70785913 70840157 + MGP_C3HHeJ_P0054947 Hat1 protein_coding protein_coding MGP_C3HHeJ_T0054948.1 MGP_C3HHeJ_G0025554.1 mouse_genomes_project 2 70786215 70840157 + MGP_C3HHeJ_P0054948 Hat1 protein_coding protein_coding MGP_C3HHeJ_T0054949.1 MGP_C3HHeJ_G0025554.1 mouse_genomes_project 2 70805860 70808833 + Hat1 protein_coding processed_transcript MGP_C3HHeJ_T0054950.1 MGP_C3HHeJ_G0025554.1 mouse_genomes_project 2 70817845 70837346 + Hat1 protein_coding processed_transcript MGP_C3HHeJ_T0013288.1 MGP_C3HHeJ_G0011392.1 mouse_genomes_project 2 12105451 12106442 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055479.1 MGP_C3HHeJ_G0025727.1 mouse_genomes_project 2 87203131 87204088 + MGP_C3HHeJ_P0055479 Olfr1112 protein_coding protein_coding MGP_C3HHeJ_T0007232.1 MGP_C3HHeJ_G0005924.1 mouse_genomes_project 2 121136384 121142870 + 1700020I14Rik lincRNA lincRNA MGP_C3HHeJ_T0007233.1 MGP_C3HHeJ_G0005924.1 mouse_genomes_project 2 121136390 121149615 + 1700020I14Rik lincRNA lincRNA MGP_C3HHeJ_T0017597.1 MGP_C3HHeJ_G0015211.1 mouse_genomes_project 2 104529993 104537227 - 4930547E08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0055267.1 MGP_C3HHeJ_G0025622.1 mouse_genomes_project 2 82775983 82842332 + MGP_C3HHeJ_P0055267 Fsip2 protein_coding protein_coding MGP_C3HHeJ_T0055268.1 MGP_C3HHeJ_G0025622.1 mouse_genomes_project 2 82781848 82797900 + MGP_C3HHeJ_P0055268 Fsip2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055269.1 MGP_C3HHeJ_G0025622.1 mouse_genomes_project 2 82813989 82842332 + MGP_C3HHeJ_P0055269 Fsip2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100464.1 MGP_C3HHeJ_G0038658.1 mouse_genomes_project 2 80451296 80451423 + Gm25420 snoRNA snoRNA MGP_C3HHeJ_T0007058.1 MGP_C3HHeJ_G0005786.1 mouse_genomes_project 2 8582843 8587467 + Gm13293 lincRNA lincRNA MGP_C3HHeJ_T0052589.1 MGP_C3HHeJ_G0025139.1 mouse_genomes_project 2 21866252 21876729 - MGP_C3HHeJ_P0052589 protein_coding protein_coding MGP_C3HHeJ_T0000996.1 MGP_C3HHeJ_G0000933.1 mouse_genomes_project 2 8457364 8459929 + TEC TEC MGP_C3HHeJ_T0101896.1 MGP_C3HHeJ_G0039861.1 mouse_genomes_project 2 85973105 85974062 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0058470.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160292391 160363698 - MGP_C3HHeJ_P0058470 Ndrg3 protein_coding protein_coding MGP_C3HHeJ_T0058471.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160292391 160363711 - MGP_C3HHeJ_P0058471 Ndrg3 protein_coding protein_coding MGP_C3HHeJ_T0058472.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160293449 160314198 - Ndrg3 protein_coding processed_transcript MGP_C3HHeJ_T0058473.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160296198 160299911 - Ndrg3 protein_coding processed_transcript MGP_C3HHeJ_T0058474.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160299208 160363690 - MGP_C3HHeJ_P0058474 Ndrg3 protein_coding protein_coding MGP_C3HHeJ_T0058475.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160310956 160324353 - Ndrg3 protein_coding processed_transcript MGP_C3HHeJ_T0058476.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160316149 160363655 - Ndrg3 protein_coding processed_transcript MGP_C3HHeJ_T0058477.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160319220 160363582 - Ndrg3 protein_coding processed_transcript MGP_C3HHeJ_T0058478.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160328069 160363702 - Ndrg3 protein_coding retained_intron MGP_C3HHeJ_T0058479.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160341679 160363651 - Ndrg3 protein_coding processed_transcript MGP_C3HHeJ_T0013671.1 MGP_C3HHeJ_G0011775.1 mouse_genomes_project 2 154843124 154844263 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054763.1 MGP_C3HHeJ_G0025517.1 mouse_genomes_project 2 65662504 65832190 - MGP_C3HHeJ_P0054763 Scn9a protein_coding protein_coding MGP_C3HHeJ_T0054764.1 MGP_C3HHeJ_G0025517.1 mouse_genomes_project 2 65662504 65832190 - MGP_C3HHeJ_P0054764 Scn9a protein_coding protein_coding MGP_C3HHeJ_T0054765.1 MGP_C3HHeJ_G0025517.1 mouse_genomes_project 2 65664510 65831891 - MGP_C3HHeJ_P0054765 Scn9a protein_coding protein_coding MGP_C3HHeJ_T0054766.1 MGP_C3HHeJ_G0025517.1 mouse_genomes_project 2 65664510 65831891 - MGP_C3HHeJ_P0054766 Scn9a protein_coding protein_coding MGP_C3HHeJ_T0054767.1 MGP_C3HHeJ_G0025517.1 mouse_genomes_project 2 65665532 65831891 - MGP_C3HHeJ_P0054767 Scn9a protein_coding protein_coding MGP_C3HHeJ_T0054768.1 MGP_C3HHeJ_G0025517.1 mouse_genomes_project 2 65726102 65729263 - Scn9a protein_coding retained_intron MGP_C3HHeJ_T0054769.1 MGP_C3HHeJ_G0025517.1 mouse_genomes_project 2 65750701 65832200 - Scn9a protein_coding retained_intron MGP_C3HHeJ_T0100459.1 MGP_C3HHeJ_G0038653.1 mouse_genomes_project 2 60490334 60490463 + Gm22338 snoRNA snoRNA MGP_C3HHeJ_T0017650.1 MGP_C3HHeJ_G0015232.1 mouse_genomes_project 2 131432343 131442952 + Gm14023 processed_transcript processed_transcript MGP_C3HHeJ_T0013411.1 MGP_C3HHeJ_G0011515.1 mouse_genomes_project 2 56152781 56157022 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010247.1 MGP_C3HHeJ_G0008380.1 mouse_genomes_project 2 35095 35202 + Gm27306 miRNA miRNA MGP_C3HHeJ_T0007187.1 MGP_C3HHeJ_G0005888.1 mouse_genomes_project 2 95221053 95222779 - Gm13793 lincRNA lincRNA MGP_C3HHeJ_T0003911.1 MGP_C3HHeJ_G0003485.1 mouse_genomes_project 2 61370157 61485723 + Gm13561 antisense antisense MGP_C3HHeJ_T0055270.1 MGP_C3HHeJ_G0025623.1 mouse_genomes_project 2 83426683 83440533 + Zc3h15 protein_coding processed_transcript MGP_C3HHeJ_T0055271.1 MGP_C3HHeJ_G0025623.1 mouse_genomes_project 2 83426739 83435758 + Zc3h15 protein_coding processed_transcript MGP_C3HHeJ_T0055272.1 MGP_C3HHeJ_G0025623.1 mouse_genomes_project 2 83426825 83442419 + Zc3h15 protein_coding processed_transcript MGP_C3HHeJ_T0055273.1 MGP_C3HHeJ_G0025623.1 mouse_genomes_project 2 83426855 83446510 + MGP_C3HHeJ_P0055273 Zc3h15 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055274.1 MGP_C3HHeJ_G0025623.1 mouse_genomes_project 2 83426855 83447395 + MGP_C3HHeJ_P0055274 Zc3h15 protein_coding protein_coding MGP_C3HHeJ_T0055275.1 MGP_C3HHeJ_G0025623.1 mouse_genomes_project 2 83438848 83440296 + Zc3h15 protein_coding processed_transcript MGP_C3HHeJ_T0055276.1 MGP_C3HHeJ_G0025623.1 mouse_genomes_project 2 83439341 83443770 + Zc3h15 protein_coding processed_transcript MGP_C3HHeJ_T0010302.1 MGP_C3HHeJ_G0008435.1 mouse_genomes_project 2 25161899 25161999 + Gm24049 miRNA miRNA MGP_C3HHeJ_T0007308.1 MGP_C3HHeJ_G0005989.1 mouse_genomes_project 2 170243137 170261230 - Gm14268 lincRNA lincRNA MGP_C3HHeJ_T0007309.1 MGP_C3HHeJ_G0005989.1 mouse_genomes_project 2 170243423 170261260 - Gm14268 lincRNA lincRNA MGP_C3HHeJ_T0004056.1 MGP_C3HHeJ_G0003585.1 mouse_genomes_project 2 155623235 155627529 - Gm14161 antisense antisense MGP_C3HHeJ_T0057045.1 MGP_C3HHeJ_G0026154.1 mouse_genomes_project 2 127833296 127834476 + Galk2 protein_coding processed_transcript MGP_C3HHeJ_T0057046.1 MGP_C3HHeJ_G0026154.1 mouse_genomes_project 2 127833321 127963681 + MGP_C3HHeJ_P0057046 Galk2 protein_coding protein_coding MGP_C3HHeJ_T0057047.1 MGP_C3HHeJ_G0026154.1 mouse_genomes_project 2 127833335 127869579 + MGP_C3HHeJ_P0057047 Galk2 protein_coding protein_coding MGP_C3HHeJ_T0057048.1 MGP_C3HHeJ_G0026154.1 mouse_genomes_project 2 127840242 127962969 + MGP_C3HHeJ_P0057048 Galk2 protein_coding protein_coding MGP_C3HHeJ_T0057049.1 MGP_C3HHeJ_G0026154.1 mouse_genomes_project 2 127840242 127905475 + MGP_C3HHeJ_P0057049 Galk2 protein_coding protein_coding MGP_C3HHeJ_T0057050.1 MGP_C3HHeJ_G0026154.1 mouse_genomes_project 2 127840380 127887021 + Galk2 protein_coding processed_transcript MGP_C3HHeJ_T0057051.1 MGP_C3HHeJ_G0026154.1 mouse_genomes_project 2 127840387 127872802 + MGP_C3HHeJ_P0057051 Galk2 protein_coding protein_coding MGP_C3HHeJ_T0057052.1 MGP_C3HHeJ_G0026154.1 mouse_genomes_project 2 127840391 127905531 + MGP_C3HHeJ_P0057052 Galk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057053.1 MGP_C3HHeJ_G0026154.1 mouse_genomes_project 2 127840405 127929627 + Galk2 protein_coding retained_intron MGP_C3HHeJ_T0057946.1 MGP_C3HHeJ_G0026373.1 mouse_genomes_project 2 155378304 155384968 - Rbck1 protein_coding retained_intron MGP_C3HHeJ_T0057947.1 MGP_C3HHeJ_G0026373.1 mouse_genomes_project 2 155378304 155394384 - MGP_C3HHeJ_P0057947 Rbck1 protein_coding protein_coding MGP_C3HHeJ_T0057948.1 MGP_C3HHeJ_G0026373.1 mouse_genomes_project 2 155378304 155394625 - MGP_C3HHeJ_P0057948 Rbck1 protein_coding protein_coding MGP_C3HHeJ_T0057949.1 MGP_C3HHeJ_G0026373.1 mouse_genomes_project 2 155380282 155385469 - Rbck1 protein_coding retained_intron MGP_C3HHeJ_T0057950.1 MGP_C3HHeJ_G0026373.1 mouse_genomes_project 2 155380750 155386335 - MGP_C3HHeJ_P0057950 Rbck1 protein_coding protein_coding MGP_C3HHeJ_T0057951.1 MGP_C3HHeJ_G0026373.1 mouse_genomes_project 2 155384908 155386587 - Rbck1 protein_coding retained_intron MGP_C3HHeJ_T0057952.1 MGP_C3HHeJ_G0026373.1 mouse_genomes_project 2 155386510 155389728 - Rbck1 protein_coding processed_transcript MGP_C3HHeJ_T0057953.1 MGP_C3HHeJ_G0026373.1 mouse_genomes_project 2 155388374 155394356 - Rbck1 protein_coding processed_transcript MGP_C3HHeJ_T0013268.1 MGP_C3HHeJ_G0011372.1 mouse_genomes_project 2 1835960 1836437 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007177.1 MGP_C3HHeJ_G0005882.1 mouse_genomes_project 2 92913186 92959869 + Gm13814 lincRNA lincRNA MGP_C3HHeJ_T0055451.1 MGP_C3HHeJ_G0025701.1 mouse_genomes_project 2 86372389 86373358 - MGP_C3HHeJ_P0055451 Olfr228 protein_coding protein_coding MGP_C3HHeJ_T0057668.1 MGP_C3HHeJ_G0026298.1 mouse_genomes_project 2 146642809 146648463 - Rrbp1 protein_coding processed_transcript MGP_C3HHeJ_T0057669.1 MGP_C3HHeJ_G0026298.1 mouse_genomes_project 2 146642809 146706340 - MGP_C3HHeJ_P0057669 Rrbp1 protein_coding protein_coding MGP_C3HHeJ_T0057670.1 MGP_C3HHeJ_G0026298.1 mouse_genomes_project 2 146643542 146645151 - Rrbp1 protein_coding processed_transcript MGP_C3HHeJ_T0057671.1 MGP_C3HHeJ_G0026298.1 mouse_genomes_project 2 146645906 146651364 - Rrbp1 protein_coding processed_transcript MGP_C3HHeJ_T0057672.1 MGP_C3HHeJ_G0026298.1 mouse_genomes_project 2 146652564 146653827 - Rrbp1 protein_coding processed_transcript MGP_C3HHeJ_T0057673.1 MGP_C3HHeJ_G0026298.1 mouse_genomes_project 2 146656693 146663581 - Rrbp1 protein_coding processed_transcript MGP_C3HHeJ_T0057674.1 MGP_C3HHeJ_G0026298.1 mouse_genomes_project 2 146660826 146679048 - Rrbp1 protein_coding processed_transcript MGP_C3HHeJ_T0057675.1 MGP_C3HHeJ_G0026298.1 mouse_genomes_project 2 146681735 146706340 - MGP_C3HHeJ_P0057675 Rrbp1 protein_coding protein_coding MGP_C3HHeJ_T0058279.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159153394 159238801 - Uqcc1 protein_coding processed_transcript MGP_C3HHeJ_T0058280.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159153394 159238801 - MGP_C3HHeJ_P0058280 Uqcc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058281.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159153396 159238784 - MGP_C3HHeJ_P0058281 Uqcc1 protein_coding protein_coding MGP_C3HHeJ_T0058282.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159153396 159238777 - MGP_C3HHeJ_P0058282 Uqcc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058283.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159153421 159239051 - MGP_C3HHeJ_P0058283 Uqcc1 protein_coding protein_coding MGP_C3HHeJ_T0058284.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159154437 159238759 - MGP_C3HHeJ_P0058284 Uqcc1 protein_coding protein_coding MGP_C3HHeJ_T0058285.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159154674 159158190 - Uqcc1 protein_coding processed_transcript MGP_C3HHeJ_T0058286.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159154731 159238785 - MGP_C3HHeJ_P0058286 Uqcc1 protein_coding protein_coding MGP_C3HHeJ_T0058287.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159154750 159239051 - MGP_C3HHeJ_P0058287 Uqcc1 protein_coding protein_coding MGP_C3HHeJ_T0058288.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159154941 159238773 - MGP_C3HHeJ_P0058288 Uqcc1 protein_coding protein_coding MGP_C3HHeJ_T0058289.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159157400 159239004 - Uqcc1 protein_coding retained_intron MGP_C3HHeJ_T0058290.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159157864 159238784 - MGP_C3HHeJ_P0058290 Uqcc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058291.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159164313 159238791 - Uqcc1 protein_coding retained_intron MGP_C3HHeJ_T0058292.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159177480 159238797 - Uqcc1 protein_coding processed_transcript MGP_C3HHeJ_T0058293.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159194605 159238801 - MGP_C3HHeJ_P0058293 Uqcc1 protein_coding protein_coding MGP_C3HHeJ_T0058294.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159194617 159219409 - Uqcc1 protein_coding retained_intron MGP_C3HHeJ_T0058295.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159194624 159239017 - Uqcc1 protein_coding processed_transcript MGP_C3HHeJ_T0058296.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159216773 159238787 - Uqcc1 protein_coding retained_intron MGP_C3HHeJ_T0058297.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159218168 159238791 - MGP_C3HHeJ_P0058297 Uqcc1 protein_coding protein_coding MGP_C3HHeJ_T0003839.1 MGP_C3HHeJ_G0003432.1 mouse_genomes_project 2 17961826 17965065 - antisense antisense MGP_C3HHeJ_T0055470.1 MGP_C3HHeJ_G0025718.1 mouse_genomes_project 2 86980258 86981233 + MGP_C3HHeJ_P0055470 Olfr1102 protein_coding protein_coding MGP_C3HHeJ_T0003824.1 MGP_C3HHeJ_G0003419.1 mouse_genomes_project 2 7062487 7064092 + Gm13256 antisense antisense MGP_C3HHeJ_T0101912.1 MGP_C3HHeJ_G0039877.1 mouse_genomes_project 2 88203948 88204899 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013539.1 MGP_C3HHeJ_G0011643.1 mouse_genomes_project 2 101076473 101077820 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013667.1 MGP_C3HHeJ_G0011771.1 mouse_genomes_project 2 153896045 153896402 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010256.1 MGP_C3HHeJ_G0008389.1 mouse_genomes_project 2 7691336 7691440 + Gm23578 miRNA miRNA MGP_C3HHeJ_T0010255.1 MGP_C3HHeJ_G0008388.1 mouse_genomes_project 2 7691057 7691154 + Mir669b miRNA miRNA MGP_C3HHeJ_T0007128.1 MGP_C3HHeJ_G0005840.1 mouse_genomes_project 2 59957278 59967986 - Gm13582 lincRNA lincRNA MGP_C3HHeJ_T0098396.1 MGP_C3HHeJ_G0036602.1 mouse_genomes_project 2 18478055 18487594 - Gm13380 sense_intronic sense_intronic MGP_C3HHeJ_T0055291.1 MGP_C3HHeJ_G0025627.1 mouse_genomes_project 2 83746022 83749712 + MGP_C3HHeJ_P0055291 protein_coding protein_coding MGP_C3HHeJ_T0056545.1 MGP_C3HHeJ_G0026055.1 mouse_genomes_project 2 120690221 120693279 + MGP_C3HHeJ_P0056545 Gm14137 protein_coding protein_coding MGP_C3HHeJ_T0001027.1 MGP_C3HHeJ_G0000964.1 mouse_genomes_project 2 22500974 22502772 - TEC TEC MGP_C3HHeJ_T0007285.1 MGP_C3HHeJ_G0005968.1 mouse_genomes_project 2 159940394 159941406 - Gm14174 lincRNA lincRNA MGP_C3HHeJ_T0011409.1 MGP_C3HHeJ_G0009542.1 mouse_genomes_project 2 78202406 78202636 - Gm23149 misc_RNA misc_RNA MGP_C3HHeJ_T0059469.1 MGP_C3HHeJ_G0026729.1 mouse_genomes_project 2 185794119 185803171 - MGP_C3HHeJ_P0059469 Ptk6 protein_coding protein_coding MGP_C3HHeJ_T0059191.1 MGP_C3HHeJ_G0026663.1 mouse_genomes_project 2 176654672 176685598 + MGP_C3HHeJ_P0059191 Rtfdc1 protein_coding protein_coding MGP_C3HHeJ_T0059192.1 MGP_C3HHeJ_G0026663.1 mouse_genomes_project 2 176654718 176680759 + Rtfdc1 protein_coding retained_intron MGP_C3HHeJ_T0059195.1 MGP_C3HHeJ_G0026663.1 mouse_genomes_project 2 176667075 176685598 + Rtfdc1 protein_coding processed_transcript MGP_C3HHeJ_T0003866.1 MGP_C3HHeJ_G0003450.1 mouse_genomes_project 2 27221237 27268443 - Gm13402 antisense antisense MGP_C3HHeJ_T0059076.1 MGP_C3HHeJ_G0026631.1 mouse_genomes_project 2 171408792 171421851 - MGP_C3HHeJ_P0059076 Spata2 protein_coding protein_coding MGP_C3HHeJ_T0059077.1 MGP_C3HHeJ_G0026631.1 mouse_genomes_project 2 171409095 171421809 - MGP_C3HHeJ_P0059077 Spata2 protein_coding protein_coding MGP_C3HHeJ_T0059078.1 MGP_C3HHeJ_G0026631.1 mouse_genomes_project 2 171412411 171413722 - Spata2 protein_coding retained_intron MGP_C3HHeJ_T0059079.1 MGP_C3HHeJ_G0026631.1 mouse_genomes_project 2 171413246 171421836 - Spata2 protein_coding processed_transcript MGP_C3HHeJ_T0059080.1 MGP_C3HHeJ_G0026631.1 mouse_genomes_project 2 171413297 171421809 - Spata2 protein_coding processed_transcript MGP_C3HHeJ_T0059081.1 MGP_C3HHeJ_G0026631.1 mouse_genomes_project 2 171413404 171421842 - Spata2 protein_coding processed_transcript MGP_C3HHeJ_T0057975.1 MGP_C3HHeJ_G0026389.1 mouse_genomes_project 2 155681909 155693286 + MGP_C3HHeJ_P0057975 Defb36 protein_coding protein_coding MGP_C3HHeJ_T0058548.1 MGP_C3HHeJ_G0026502.1 mouse_genomes_project 2 161164313 161324348 + MGP_C3HHeJ_P0058548 Ctnnbl1 protein_coding protein_coding MGP_C3HHeJ_T0058549.1 MGP_C3HHeJ_G0026502.1 mouse_genomes_project 2 161220602 161239588 + Ctnnbl1 protein_coding processed_transcript MGP_C3HHeJ_T0058550.1 MGP_C3HHeJ_G0026502.1 mouse_genomes_project 2 161222018 161250669 + Ctnnbl1 protein_coding processed_transcript MGP_C3HHeJ_T0058551.1 MGP_C3HHeJ_G0026502.1 mouse_genomes_project 2 161222051 161266562 + Ctnnbl1 protein_coding processed_transcript MGP_C3HHeJ_T0099221.1 MGP_C3HHeJ_G0037415.1 mouse_genomes_project 2 142127828 142127932 + Gm27385 snRNA snRNA MGP_C3HHeJ_T0007108.1 MGP_C3HHeJ_G0005823.1 mouse_genomes_project 2 44238729 44240535 + 1700019E08Rik lincRNA lincRNA MGP_C3HHeJ_T0007109.1 MGP_C3HHeJ_G0005823.1 mouse_genomes_project 2 44238924 44240154 + 1700019E08Rik lincRNA lincRNA MGP_C3HHeJ_T0057918.1 MGP_C3HHeJ_G0026363.1 mouse_genomes_project 2 154754690 154779987 - MGP_C3HHeJ_P0057918 Psmf1 protein_coding protein_coding MGP_C3HHeJ_T0057919.1 MGP_C3HHeJ_G0026363.1 mouse_genomes_project 2 154754940 154759874 - Psmf1 protein_coding retained_intron MGP_C3HHeJ_T0057920.1 MGP_C3HHeJ_G0026363.1 mouse_genomes_project 2 154754940 154779970 - MGP_C3HHeJ_P0057920 Psmf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057921.1 MGP_C3HHeJ_G0026363.1 mouse_genomes_project 2 154757143 154782863 - MGP_C3HHeJ_P0057921 Psmf1 protein_coding protein_coding MGP_C3HHeJ_T0057922.1 MGP_C3HHeJ_G0026363.1 mouse_genomes_project 2 154758363 154768808 - Psmf1 protein_coding retained_intron MGP_C3HHeJ_T0057923.1 MGP_C3HHeJ_G0026363.1 mouse_genomes_project 2 154766324 154779970 - Psmf1 protein_coding retained_intron MGP_C3HHeJ_T0007087.1 MGP_C3HHeJ_G0005807.1 mouse_genomes_project 2 28595711 28657428 + 9330198N18Rik lincRNA lincRNA MGP_C3HHeJ_T0007172.1 MGP_C3HHeJ_G0005877.1 mouse_genomes_project 2 84979801 84991393 + Gm13715 lincRNA lincRNA MGP_C3HHeJ_T0013496.1 MGP_C3HHeJ_G0011600.1 mouse_genomes_project 2 86205652 86208581 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013732.1 MGP_C3HHeJ_G0011836.1 mouse_genomes_project 2 183752710 183753281 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013468.1 MGP_C3HHeJ_G0011572.1 mouse_genomes_project 2 77602308 77603102 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053915.1 MGP_C3HHeJ_G0025358.1 mouse_genomes_project 2 30890785 30897833 - MGP_C3HHeJ_P0053915 Cfap157 protein_coding protein_coding MGP_C3HHeJ_T0053916.1 MGP_C3HHeJ_G0025358.1 mouse_genomes_project 2 30891619 30892551 - Cfap157 protein_coding retained_intron MGP_C3HHeJ_T0000998.1 MGP_C3HHeJ_G0000935.1 mouse_genomes_project 2 8604000 8606174 - TEC TEC MGP_C3HHeJ_T0056107.1 MGP_C3HHeJ_G0025926.1 mouse_genomes_project 2 104285734 104437831 + MGP_C3HHeJ_P0056107 Abtb2 protein_coding protein_coding MGP_C3HHeJ_T0056108.1 MGP_C3HHeJ_G0025926.1 mouse_genomes_project 2 104434442 104436625 + Abtb2 protein_coding processed_transcript MGP_C3HHeJ_T0056109.1 MGP_C3HHeJ_G0025926.1 mouse_genomes_project 2 104434488 104437831 + Abtb2 protein_coding processed_transcript MGP_C3HHeJ_T0013449.1 MGP_C3HHeJ_G0011553.1 mouse_genomes_project 2 70809413 70809794 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056159.1 MGP_C3HHeJ_G0025935.1 mouse_genomes_project 2 104830106 104847333 + Cd59a protein_coding processed_transcript MGP_C3HHeJ_T0056160.1 MGP_C3HHeJ_G0025935.1 mouse_genomes_project 2 104830106 104848380 + MGP_C3HHeJ_P0056160 Cd59a protein_coding protein_coding MGP_C3HHeJ_T0053833.1 MGP_C3HHeJ_G0025344.1 mouse_genomes_project 2 30672950 30675672 + MGP_C3HHeJ_P0053833 Dpm2 protein_coding protein_coding MGP_C3HHeJ_T0053834.1 MGP_C3HHeJ_G0025344.1 mouse_genomes_project 2 30672950 30675656 + MGP_C3HHeJ_P0053834 Dpm2 protein_coding protein_coding MGP_C3HHeJ_T0053835.1 MGP_C3HHeJ_G0025344.1 mouse_genomes_project 2 30672959 30675174 + Dpm2 protein_coding retained_intron MGP_C3HHeJ_T0053836.1 MGP_C3HHeJ_G0025344.1 mouse_genomes_project 2 30674139 30675549 + Dpm2 protein_coding retained_intron MGP_C3HHeJ_T0055724.1 MGP_C3HHeJ_G0025863.1 mouse_genomes_project 2 91459307 91477680 + MGP_C3HHeJ_P0055724 Mybpc3 protein_coding protein_coding MGP_C3HHeJ_T0055725.1 MGP_C3HHeJ_G0025863.1 mouse_genomes_project 2 91459307 91477674 + MGP_C3HHeJ_P0055725 Mybpc3 protein_coding protein_coding MGP_C3HHeJ_T0055726.1 MGP_C3HHeJ_G0025863.1 mouse_genomes_project 2 91459307 91477674 + MGP_C3HHeJ_P0055726 Mybpc3 protein_coding protein_coding MGP_C3HHeJ_T0055727.1 MGP_C3HHeJ_G0025863.1 mouse_genomes_project 2 91459332 91477681 + MGP_C3HHeJ_P0055727 Mybpc3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0003922.1 MGP_C3HHeJ_G0003495.1 mouse_genomes_project 2 67751886 67753556 + Gm13596 antisense antisense MGP_C3HHeJ_T0013365.1 MGP_C3HHeJ_G0011469.1 mouse_genomes_project 2 37889521 37890004 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052581.1 MGP_C3HHeJ_G0025135.1 mouse_genomes_project 2 21582425 21631099 - MGP_C3HHeJ_P0052581 Hnmt protein_coding protein_coding MGP_C3HHeJ_T0052582.1 MGP_C3HHeJ_G0025135.1 mouse_genomes_project 2 21582455 21630789 - MGP_C3HHeJ_P0052582 Hnmt protein_coding protein_coding MGP_C3HHeJ_T0052583.1 MGP_C3HHeJ_G0025135.1 mouse_genomes_project 2 21583044 21630576 - MGP_C3HHeJ_P0052583 Hnmt protein_coding protein_coding MGP_C3HHeJ_T0013720.1 MGP_C3HHeJ_G0011824.1 mouse_genomes_project 2 171531034 171531510 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053095.1 MGP_C3HHeJ_G0025228.1 mouse_genomes_project 2 24375117 24383158 + MGP_C3HHeJ_P0053095 Fam69b protein_coding protein_coding MGP_C3HHeJ_T0053096.1 MGP_C3HHeJ_G0025228.1 mouse_genomes_project 2 24375154 24379668 + Fam69b protein_coding processed_transcript MGP_C3HHeJ_T0053097.1 MGP_C3HHeJ_G0025228.1 mouse_genomes_project 2 24380863 24381686 + Fam69b protein_coding processed_transcript MGP_C3HHeJ_T0057481.1 MGP_C3HHeJ_G0026255.1 mouse_genomes_project 2 134195885 134201183 + MGP_C3HHeJ_P0057481 protein_coding protein_coding MGP_C3HHeJ_T0057482.1 MGP_C3HHeJ_G0026255.1 mouse_genomes_project 2 134195886 134201183 + MGP_C3HHeJ_P0057482 protein_coding protein_coding MGP_C3HHeJ_T0057483.1 MGP_C3HHeJ_G0026255.1 mouse_genomes_project 2 134195886 134201183 + MGP_C3HHeJ_P0057483 protein_coding protein_coding MGP_C3HHeJ_T0057484.1 MGP_C3HHeJ_G0026255.1 mouse_genomes_project 2 134196061 134201183 + MGP_C3HHeJ_P0057484 protein_coding protein_coding MGP_C3HHeJ_T0055632.1 MGP_C3HHeJ_G0025848.1 mouse_genomes_project 2 90396146 90397061 - MGP_C3HHeJ_P0055632 Olfr1270 protein_coding protein_coding MGP_C3HHeJ_T0058639.1 MGP_C3HHeJ_G0026524.1 mouse_genomes_project 2 164317183 164446490 - Zhx3 protein_coding processed_transcript MGP_C3HHeJ_T0058647.1 MGP_C3HHeJ_G0026524.1 mouse_genomes_project 2 164333660 164446064 - MGP_C3HHeJ_P0058647 Zhx3 protein_coding protein_coding MGP_C3HHeJ_T0058648.1 MGP_C3HHeJ_G0026524.1 mouse_genomes_project 2 164334257 164427678 - MGP_C3HHeJ_P0058648 Zhx3 protein_coding protein_coding MGP_C3HHeJ_T0058649.1 MGP_C3HHeJ_G0026524.1 mouse_genomes_project 2 164338911 164446482 - MGP_C3HHeJ_P0058649 Zhx3 protein_coding protein_coding MGP_C3HHeJ_T0058650.1 MGP_C3HHeJ_G0026524.1 mouse_genomes_project 2 164350572 164446321 - MGP_C3HHeJ_P0058650 Zhx3 protein_coding protein_coding MGP_C3HHeJ_T0058651.1 MGP_C3HHeJ_G0026524.1 mouse_genomes_project 2 164350609 164446482 - MGP_C3HHeJ_P0058651 Zhx3 protein_coding protein_coding MGP_C3HHeJ_T0013453.1 MGP_C3HHeJ_G0011557.1 mouse_genomes_project 2 72037109 72037451 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056817.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122826770 122845374 - Trp53bp1 protein_coding processed_transcript MGP_C3HHeJ_T0056818.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122828328 122906169 - MGP_C3HHeJ_P0056818 Trp53bp1 protein_coding protein_coding MGP_C3HHeJ_T0056819.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122828328 122906103 - MGP_C3HHeJ_P0056819 Trp53bp1 protein_coding protein_coding MGP_C3HHeJ_T0056820.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122831736 122869076 - MGP_C3HHeJ_P0056820 Trp53bp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056821.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122833124 122838393 - Trp53bp1 protein_coding processed_transcript MGP_C3HHeJ_T0056822.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122836112 122841159 - MGP_C3HHeJ_P0056822 Trp53bp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056823.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122838492 122841975 - Trp53bp1 protein_coding processed_transcript MGP_C3HHeJ_T0056824.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122841820 122854598 - MGP_C3HHeJ_P0056824 Trp53bp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056825.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122842245 122854589 - Trp53bp1 protein_coding retained_intron MGP_C3HHeJ_T0056826.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122844700 122851808 - Trp53bp1 protein_coding processed_transcript MGP_C3HHeJ_T0056827.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122849295 122854736 - Trp53bp1 protein_coding retained_intron MGP_C3HHeJ_T0056828.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122849531 122906083 - MGP_C3HHeJ_P0056828 Trp53bp1 protein_coding protein_coding MGP_C3HHeJ_T0056829.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122861490 122868759 - MGP_C3HHeJ_P0056829 Trp53bp1 protein_coding protein_coding MGP_C3HHeJ_T0056830.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122865161 122868891 - Trp53bp1 protein_coding processed_transcript MGP_C3HHeJ_T0056831.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122869893 122886061 - MGP_C3HHeJ_P0056831 Trp53bp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056832.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122890554 122906131 - Trp53bp1 protein_coding processed_transcript MGP_C3HHeJ_T0056833.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122893859 122905048 - Trp53bp1 protein_coding retained_intron MGP_C3HHeJ_T0056834.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122902074 122906123 - Trp53bp1 protein_coding retained_intron MGP_C3HHeJ_T0056835.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122904391 122906132 - Trp53bp1 protein_coding retained_intron MGP_C3HHeJ_T0010381.1 MGP_C3HHeJ_G0008514.1 mouse_genomes_project 2 155018091 155018180 - Mir1953 miRNA miRNA MGP_C3HHeJ_T0054727.1 MGP_C3HHeJ_G0025511.1 mouse_genomes_project 2 64602450 64723697 - MGP_C3HHeJ_P0054727 protein_coding protein_coding MGP_C3HHeJ_T0054728.1 MGP_C3HHeJ_G0025511.1 mouse_genomes_project 2 64603595 64724548 - MGP_C3HHeJ_P0054728 protein_coding protein_coding MGP_C3HHeJ_T0054729.1 MGP_C3HHeJ_G0025511.1 mouse_genomes_project 2 64642651 64648825 - protein_coding processed_transcript MGP_C3HHeJ_T0054730.1 MGP_C3HHeJ_G0025511.1 mouse_genomes_project 2 64680478 64685379 - MGP_C3HHeJ_P0054730 protein_coding protein_coding MGP_C3HHeJ_T0055681.1 MGP_C3HHeJ_G0025857.1 mouse_genomes_project 2 91236864 91242642 + MGP_C3HHeJ_P0055681 Kbtbd4 protein_coding protein_coding MGP_C3HHeJ_T0055682.1 MGP_C3HHeJ_G0025857.1 mouse_genomes_project 2 91236867 91242642 + MGP_C3HHeJ_P0055682 Kbtbd4 protein_coding protein_coding MGP_C3HHeJ_T0055683.1 MGP_C3HHeJ_G0025857.1 mouse_genomes_project 2 91236893 91237742 + Kbtbd4 protein_coding processed_transcript MGP_C3HHeJ_T0055684.1 MGP_C3HHeJ_G0025857.1 mouse_genomes_project 2 91237199 91238178 + Kbtbd4 protein_coding processed_transcript MGP_C3HHeJ_T0055685.1 MGP_C3HHeJ_G0025857.1 mouse_genomes_project 2 91241244 91243707 + Kbtbd4 protein_coding processed_transcript MGP_C3HHeJ_T0007056.1 MGP_C3HHeJ_G0005784.1 mouse_genomes_project 2 8558528 8563050 - Gm38171 lincRNA lincRNA MGP_C3HHeJ_T0017626.1 MGP_C3HHeJ_G0015223.1 mouse_genomes_project 2 121824203 121824878 - Gm13997 processed_transcript processed_transcript MGP_C3HHeJ_T0013270.1 MGP_C3HHeJ_G0011374.1 mouse_genomes_project 2 1968698 1968923 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056719.1 MGP_C3HHeJ_G0026089.1 mouse_genomes_project 2 122178015 122214127 + MGP_C3HHeJ_P0056719 Snap23 protein_coding protein_coding MGP_C3HHeJ_T0056720.1 MGP_C3HHeJ_G0026089.1 mouse_genomes_project 2 122178035 122214127 + MGP_C3HHeJ_P0056720 Snap23 protein_coding protein_coding MGP_C3HHeJ_T0056721.1 MGP_C3HHeJ_G0026089.1 mouse_genomes_project 2 122178041 122214127 + MGP_C3HHeJ_P0056721 Snap23 protein_coding protein_coding MGP_C3HHeJ_T0056722.1 MGP_C3HHeJ_G0026089.1 mouse_genomes_project 2 122178065 122209638 + MGP_C3HHeJ_P0056722 Snap23 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056723.1 MGP_C3HHeJ_G0026089.1 mouse_genomes_project 2 122178067 122197815 + Snap23 protein_coding retained_intron MGP_C3HHeJ_T0056724.1 MGP_C3HHeJ_G0026089.1 mouse_genomes_project 2 122178067 122199136 + MGP_C3HHeJ_P0056724 Snap23 protein_coding protein_coding MGP_C3HHeJ_T0056725.1 MGP_C3HHeJ_G0026089.1 mouse_genomes_project 2 122178082 122209551 + MGP_C3HHeJ_P0056725 Snap23 protein_coding protein_coding MGP_C3HHeJ_T0056726.1 MGP_C3HHeJ_G0026089.1 mouse_genomes_project 2 122199109 122208270 + Snap23 protein_coding retained_intron MGP_C3HHeJ_T0056727.1 MGP_C3HHeJ_G0026089.1 mouse_genomes_project 2 122203380 122209633 + Snap23 protein_coding processed_transcript MGP_C3HHeJ_T0013536.1 MGP_C3HHeJ_G0011640.1 mouse_genomes_project 2 100654999 100655183 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013636.1 MGP_C3HHeJ_G0011740.1 mouse_genomes_project 2 144471290 144479877 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057054.1 MGP_C3HHeJ_G0026155.1 mouse_genomes_project 2 127962864 128150426 - MGP_C3HHeJ_P0057054 Fam227b protein_coding protein_coding MGP_C3HHeJ_T0057055.1 MGP_C3HHeJ_G0026155.1 mouse_genomes_project 2 127963009 128150406 - MGP_C3HHeJ_P0057055 Fam227b protein_coding protein_coding MGP_C3HHeJ_T0057056.1 MGP_C3HHeJ_G0026155.1 mouse_genomes_project 2 127963009 128138750 - MGP_C3HHeJ_P0057056 Fam227b protein_coding protein_coding MGP_C3HHeJ_T0057057.1 MGP_C3HHeJ_G0026155.1 mouse_genomes_project 2 127981099 128150426 - Fam227b protein_coding retained_intron MGP_C3HHeJ_T0017651.1 MGP_C3HHeJ_G0015233.1 mouse_genomes_project 2 132722601 132743338 - 4930473A02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0055481.1 MGP_C3HHeJ_G0025729.1 mouse_genomes_project 2 87319880 87321316 + MGP_C3HHeJ_P0055481 Olfr1116 protein_coding protein_coding MGP_C3HHeJ_T0004107.1 MGP_C3HHeJ_G0003627.1 mouse_genomes_project 2 177391939 177395783 + Ctcflos antisense antisense MGP_C3HHeJ_T0004108.1 MGP_C3HHeJ_G0003627.1 mouse_genomes_project 2 177391956 177418836 + Ctcflos antisense antisense MGP_C3HHeJ_T0004109.1 MGP_C3HHeJ_G0003627.1 mouse_genomes_project 2 177401883 177415876 + Ctcflos antisense antisense MGP_C3HHeJ_T0004110.1 MGP_C3HHeJ_G0003627.1 mouse_genomes_project 2 177411595 177419770 + Ctcflos antisense antisense MGP_C3HHeJ_T0056238.1 MGP_C3HHeJ_G0025951.1 mouse_genomes_project 2 106501269 106701349 - MGP_C3HHeJ_P0056238 Elp4 protein_coding protein_coding MGP_C3HHeJ_T0056239.1 MGP_C3HHeJ_G0025951.1 mouse_genomes_project 2 106530745 106658716 - MGP_C3HHeJ_P0056239 Elp4 protein_coding protein_coding MGP_C3HHeJ_T0056240.1 MGP_C3HHeJ_G0025951.1 mouse_genomes_project 2 106599212 106621365 - Elp4 protein_coding retained_intron MGP_C3HHeJ_T0056241.1 MGP_C3HHeJ_G0025951.1 mouse_genomes_project 2 106658803 106701269 - Elp4 protein_coding processed_transcript MGP_C3HHeJ_T0007099.1 MGP_C3HHeJ_G0005816.1 mouse_genomes_project 2 33452561 33454275 + Gm13605 lincRNA lincRNA MGP_C3HHeJ_T0013287.1 MGP_C3HHeJ_G0011391.1 mouse_genomes_project 2 12076906 12077285 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003958.1 MGP_C3HHeJ_G0003518.1 mouse_genomes_project 2 84903297 84917263 + Gm13713 antisense antisense MGP_C3HHeJ_T0003959.1 MGP_C3HHeJ_G0003518.1 mouse_genomes_project 2 84903297 84939259 + Gm13713 antisense antisense MGP_C3HHeJ_T0007200.1 MGP_C3HHeJ_G0005898.1 mouse_genomes_project 2 104640172 104648504 + Gm13881 lincRNA lincRNA MGP_C3HHeJ_T0058799.1 MGP_C3HHeJ_G0026572.1 mouse_genomes_project 2 168210536 168215198 + MGP_C3HHeJ_P0058799 Dbndd2 protein_coding protein_coding MGP_C3HHeJ_T0058800.1 MGP_C3HHeJ_G0026572.1 mouse_genomes_project 2 168210885 168215706 + MGP_C3HHeJ_P0058800 Dbndd2 protein_coding protein_coding MGP_C3HHeJ_T0058801.1 MGP_C3HHeJ_G0026572.1 mouse_genomes_project 2 168210885 168215198 + MGP_C3HHeJ_P0058801 Dbndd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058802.1 MGP_C3HHeJ_G0026572.1 mouse_genomes_project 2 168210911 168214647 + MGP_C3HHeJ_P0058802 Dbndd2 protein_coding protein_coding MGP_C3HHeJ_T0058803.1 MGP_C3HHeJ_G0026572.1 mouse_genomes_project 2 168211307 168217779 + MGP_C3HHeJ_P0058803 Dbndd2 protein_coding protein_coding MGP_C3HHeJ_T0058804.1 MGP_C3HHeJ_G0026572.1 mouse_genomes_project 2 168212251 168215198 + MGP_C3HHeJ_P0058804 Dbndd2 protein_coding protein_coding MGP_C3HHeJ_T0057140.1 MGP_C3HHeJ_G0026173.1 mouse_genomes_project 2 129327743 129340910 + MGP_C3HHeJ_P0057140 Tmem127 protein_coding protein_coding MGP_C3HHeJ_T0057141.1 MGP_C3HHeJ_G0026173.1 mouse_genomes_project 2 129327804 129336974 + MGP_C3HHeJ_P0057141 Tmem127 protein_coding protein_coding MGP_C3HHeJ_T0057142.1 MGP_C3HHeJ_G0026173.1 mouse_genomes_project 2 129327808 129337346 + MGP_C3HHeJ_P0057142 Tmem127 protein_coding protein_coding MGP_C3HHeJ_T0010303.1 MGP_C3HHeJ_G0008436.1 mouse_genomes_project 2 25214560 25214642 - Mir7578 miRNA miRNA MGP_C3HHeJ_T0058771.1 MGP_C3HHeJ_G0026560.1 mouse_genomes_project 2 167954466 167961053 - MGP_C3HHeJ_P0058771 protein_coding protein_coding MGP_C3HHeJ_T0013729.1 MGP_C3HHeJ_G0011833.1 mouse_genomes_project 2 178925528 178926101 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057247.1 MGP_C3HHeJ_G0026203.1 mouse_genomes_project 2 131257344 131261770 + MGP_C3HHeJ_P0057247 Chchd5 protein_coding protein_coding MGP_C3HHeJ_T0057248.1 MGP_C3HHeJ_G0026203.1 mouse_genomes_project 2 131257448 131261649 + Chchd5 protein_coding processed_transcript MGP_C3HHeJ_T0057249.1 MGP_C3HHeJ_G0026203.1 mouse_genomes_project 2 131257494 131261116 + Chchd5 protein_coding retained_intron MGP_C3HHeJ_T0054198.1 MGP_C3HHeJ_G0025425.1 mouse_genomes_project 2 35636320 35646364 - MGP_C3HHeJ_P0054198 Pdcl protein_coding protein_coding MGP_C3HHeJ_T0054199.1 MGP_C3HHeJ_G0025425.1 mouse_genomes_project 2 35636834 35646285 - MGP_C3HHeJ_P0054199 Pdcl protein_coding protein_coding MGP_C3HHeJ_T0054200.1 MGP_C3HHeJ_G0025425.1 mouse_genomes_project 2 35638365 35646221 - MGP_C3HHeJ_P0054200 Pdcl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054201.1 MGP_C3HHeJ_G0025425.1 mouse_genomes_project 2 35638404 35646228 - MGP_C3HHeJ_P0054201 Pdcl protein_coding protein_coding MGP_C3HHeJ_T0059350.1 MGP_C3HHeJ_G0026705.1 mouse_genomes_project 2 184724844 184728115 - Lama5 protein_coding processed_transcript MGP_C3HHeJ_T0059351.1 MGP_C3HHeJ_G0026705.1 mouse_genomes_project 2 184724844 184774020 - MGP_C3HHeJ_P0059351 Lama5 protein_coding protein_coding MGP_C3HHeJ_T0059352.1 MGP_C3HHeJ_G0026705.1 mouse_genomes_project 2 184724925 184726059 - Lama5 protein_coding processed_transcript MGP_C3HHeJ_T0059353.1 MGP_C3HHeJ_G0026705.1 mouse_genomes_project 2 184725639 184726875 - Lama5 protein_coding processed_transcript MGP_C3HHeJ_T0056179.1 MGP_C3HHeJ_G0025940.1 mouse_genomes_project 2 105432879 105457476 - Tcp11l1 protein_coding processed_transcript MGP_C3HHeJ_T0056182.1 MGP_C3HHeJ_G0025940.1 mouse_genomes_project 2 105451188 105486617 - MGP_C3HHeJ_P0056182 Tcp11l1 protein_coding protein_coding MGP_C3HHeJ_T0056183.1 MGP_C3HHeJ_G0025940.1 mouse_genomes_project 2 105453147 105486623 - MGP_C3HHeJ_P0056183 Tcp11l1 protein_coding protein_coding MGP_C3HHeJ_T0056184.1 MGP_C3HHeJ_G0025940.1 mouse_genomes_project 2 105457999 105486630 - Tcp11l1 protein_coding retained_intron MGP_C3HHeJ_T0056185.1 MGP_C3HHeJ_G0025940.1 mouse_genomes_project 2 105470811 105479533 - Tcp11l1 protein_coding processed_transcript MGP_C3HHeJ_T0056186.1 MGP_C3HHeJ_G0025940.1 mouse_genomes_project 2 105472357 105486554 - Tcp11l1 protein_coding processed_transcript MGP_C3HHeJ_T0056187.1 MGP_C3HHeJ_G0025940.1 mouse_genomes_project 2 105478015 105486627 - Tcp11l1 protein_coding processed_transcript MGP_C3HHeJ_T0010253.1 MGP_C3HHeJ_G0008386.1 mouse_genomes_project 2 7690496 7690617 + Mir669f miRNA miRNA MGP_C3HHeJ_T0058268.1 MGP_C3HHeJ_G0026461.1 mouse_genomes_project 2 159076395 159120937 + MGP_C3HHeJ_P0058268 Mmp24 protein_coding protein_coding MGP_C3HHeJ_T0058269.1 MGP_C3HHeJ_G0026461.1 mouse_genomes_project 2 159108631 159111899 + Mmp24 protein_coding retained_intron MGP_C3HHeJ_T0010279.1 MGP_C3HHeJ_G0008412.1 mouse_genomes_project 2 7717209 7717305 + Mir669o miRNA miRNA MGP_C3HHeJ_T0100458.1 MGP_C3HHeJ_G0038652.1 mouse_genomes_project 2 60278102 60278234 + Gm26422 snoRNA snoRNA MGP_C3HHeJ_T0057705.1 MGP_C3HHeJ_G0026306.1 mouse_genomes_project 2 147251596 147265839 + MGP_C3HHeJ_P0057705 Polr3f protein_coding protein_coding MGP_C3HHeJ_T0057706.1 MGP_C3HHeJ_G0026306.1 mouse_genomes_project 2 147251620 147254574 + Polr3f protein_coding processed_transcript MGP_C3HHeJ_T0057707.1 MGP_C3HHeJ_G0026306.1 mouse_genomes_project 2 147251626 147259017 + MGP_C3HHeJ_P0057707 Polr3f protein_coding protein_coding MGP_C3HHeJ_T0057708.1 MGP_C3HHeJ_G0026306.1 mouse_genomes_project 2 147251658 147258534 + Polr3f protein_coding processed_transcript MGP_C3HHeJ_T0057709.1 MGP_C3HHeJ_G0026306.1 mouse_genomes_project 2 147256203 147262638 + Polr3f protein_coding processed_transcript MGP_C3HHeJ_T0057710.1 MGP_C3HHeJ_G0026306.1 mouse_genomes_project 2 147259784 147260472 + Polr3f protein_coding processed_transcript MGP_C3HHeJ_T0057711.1 MGP_C3HHeJ_G0026306.1 mouse_genomes_project 2 147260019 147262738 + Polr3f protein_coding processed_transcript MGP_C3HHeJ_T0057621.1 MGP_C3HHeJ_G0026285.1 mouse_genomes_project 2 142381790 142624476 - MGP_C3HHeJ_P0057621 Tasp1 protein_coding protein_coding MGP_C3HHeJ_T0057622.1 MGP_C3HHeJ_G0026285.1 mouse_genomes_project 2 142381790 142624451 - MGP_C3HHeJ_P0057622 Tasp1 protein_coding protein_coding MGP_C3HHeJ_T0057623.1 MGP_C3HHeJ_G0026285.1 mouse_genomes_project 2 142381790 142624496 - MGP_C3HHeJ_P0057623 Tasp1 protein_coding protein_coding MGP_C3HHeJ_T0057624.1 MGP_C3HHeJ_G0026285.1 mouse_genomes_project 2 142529729 142598823 - Tasp1 protein_coding retained_intron MGP_C3HHeJ_T0059316.1 MGP_C3HHeJ_G0026699.1 mouse_genomes_project 2 184582943 184583955 - Psma7 protein_coding retained_intron MGP_C3HHeJ_T0059317.1 MGP_C3HHeJ_G0026699.1 mouse_genomes_project 2 184582944 184588983 - Psma7 protein_coding retained_intron MGP_C3HHeJ_T0059318.1 MGP_C3HHeJ_G0026699.1 mouse_genomes_project 2 184582944 184589021 - MGP_C3HHeJ_P0059318 Psma7 protein_coding protein_coding MGP_C3HHeJ_T0059319.1 MGP_C3HHeJ_G0026699.1 mouse_genomes_project 2 184583389 184584059 - Psma7 protein_coding retained_intron MGP_C3HHeJ_T0059320.1 MGP_C3HHeJ_G0026699.1 mouse_genomes_project 2 184584204 184585392 - Psma7 protein_coding retained_intron MGP_C3HHeJ_T0059321.1 MGP_C3HHeJ_G0026699.1 mouse_genomes_project 2 184584639 184586716 - Psma7 protein_coding retained_intron MGP_C3HHeJ_T0059322.1 MGP_C3HHeJ_G0026699.1 mouse_genomes_project 2 184585866 184588973 - Psma7 protein_coding processed_transcript MGP_C3HHeJ_T0055446.1 MGP_C3HHeJ_G0025696.1 mouse_genomes_project 2 86221675 86222611 - MGP_C3HHeJ_P0055446 Olfr1055 protein_coding protein_coding MGP_C3HHeJ_T0058419.1 MGP_C3HHeJ_G0026481.1 mouse_genomes_project 2 159632560 159690089 + MGP_C3HHeJ_P0058419 Cnbd2 protein_coding protein_coding MGP_C3HHeJ_T0058420.1 MGP_C3HHeJ_G0026481.1 mouse_genomes_project 2 159632839 159660225 + Cnbd2 protein_coding processed_transcript MGP_C3HHeJ_T0058421.1 MGP_C3HHeJ_G0026481.1 mouse_genomes_project 2 159632878 159640903 + Cnbd2 protein_coding retained_intron MGP_C3HHeJ_T0058422.1 MGP_C3HHeJ_G0026481.1 mouse_genomes_project 2 159632894 159690092 + MGP_C3HHeJ_P0058422 Cnbd2 protein_coding protein_coding MGP_C3HHeJ_T0058423.1 MGP_C3HHeJ_G0026481.1 mouse_genomes_project 2 159655441 159660827 + Cnbd2 protein_coding processed_transcript MGP_C3HHeJ_T0053434.1 MGP_C3HHeJ_G0025288.1 mouse_genomes_project 2 28023511 28025587 - Zdhhc12 protein_coding processed_transcript MGP_C3HHeJ_T0053435.1 MGP_C3HHeJ_G0025288.1 mouse_genomes_project 2 28023511 28026216 - MGP_C3HHeJ_P0053435 Zdhhc12 protein_coding protein_coding MGP_C3HHeJ_T0053436.1 MGP_C3HHeJ_G0025288.1 mouse_genomes_project 2 28023518 28026203 - MGP_C3HHeJ_P0053436 Zdhhc12 protein_coding protein_coding MGP_C3HHeJ_T0053437.1 MGP_C3HHeJ_G0025288.1 mouse_genomes_project 2 28023898 28026184 - Zdhhc12 protein_coding retained_intron MGP_C3HHeJ_T0058748.1 MGP_C3HHeJ_G0026551.1 mouse_genomes_project 2 167713044 167741172 + MGP_C3HHeJ_P0058748 Pabpc1l protein_coding protein_coding MGP_C3HHeJ_T0058749.1 MGP_C3HHeJ_G0026551.1 mouse_genomes_project 2 167719761 167732615 + Pabpc1l protein_coding processed_transcript MGP_C3HHeJ_T0058750.1 MGP_C3HHeJ_G0026551.1 mouse_genomes_project 2 167727286 167732842 + Pabpc1l protein_coding processed_transcript MGP_C3HHeJ_T0058751.1 MGP_C3HHeJ_G0026551.1 mouse_genomes_project 2 167738105 167741172 + Pabpc1l protein_coding processed_transcript MGP_C3HHeJ_T0058752.1 MGP_C3HHeJ_G0026551.1 mouse_genomes_project 2 167738647 167740801 + Pabpc1l protein_coding processed_transcript MGP_C3HHeJ_T0101891.1 MGP_C3HHeJ_G0039856.1 mouse_genomes_project 2 85430834 85431779 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0057192.1 MGP_C3HHeJ_G0026187.1 mouse_genomes_project 2 129877427 129878529 - MGP_C3HHeJ_P0057192 1500011K16Rik protein_coding protein_coding MGP_C3HHeJ_T0098104.1 MGP_C3HHeJ_G0036316.1 mouse_genomes_project 2 84445183 84445296 - n-R5s200 rRNA rRNA MGP_C3HHeJ_T0056611.1 MGP_C3HHeJ_G0026073.1 mouse_genomes_project 2 121354713 121375137 + MGP_C3HHeJ_P0056611 Tyro3 protein_coding protein_coding MGP_C3HHeJ_T0056612.1 MGP_C3HHeJ_G0026073.1 mouse_genomes_project 2 121356262 121362667 + Tyro3 protein_coding processed_transcript MGP_C3HHeJ_T0056613.1 MGP_C3HHeJ_G0026073.1 mouse_genomes_project 2 121356350 121360352 + Tyro3 protein_coding processed_transcript MGP_C3HHeJ_T0056614.1 MGP_C3HHeJ_G0026073.1 mouse_genomes_project 2 121356535 121375137 + MGP_C3HHeJ_P0056614 Tyro3 protein_coding protein_coding MGP_C3HHeJ_T0056615.1 MGP_C3HHeJ_G0026073.1 mouse_genomes_project 2 121358124 121360310 + Tyro3 protein_coding processed_transcript MGP_C3HHeJ_T0056616.1 MGP_C3HHeJ_G0026073.1 mouse_genomes_project 2 121360103 121365010 + Tyro3 protein_coding retained_intron MGP_C3HHeJ_T0056617.1 MGP_C3HHeJ_G0026073.1 mouse_genomes_project 2 121366226 121375124 + Tyro3 protein_coding retained_intron MGP_C3HHeJ_T0056618.1 MGP_C3HHeJ_G0026073.1 mouse_genomes_project 2 121367862 121369408 + Tyro3 protein_coding retained_intron MGP_C3HHeJ_T0056211.1 MGP_C3HHeJ_G0025948.1 mouse_genomes_project 2 106022505 106175624 + MGP_C3HHeJ_P0056211 Them7 protein_coding protein_coding MGP_C3HHeJ_T0056212.1 MGP_C3HHeJ_G0025948.1 mouse_genomes_project 2 106022527 106174863 + Them7 protein_coding processed_transcript MGP_C3HHeJ_T0057676.1 MGP_C3HHeJ_G0026299.1 mouse_genomes_project 2 146728116 146769541 + MGP_C3HHeJ_P0057676 Banf2 protein_coding protein_coding MGP_C3HHeJ_T0057677.1 MGP_C3HHeJ_G0026299.1 mouse_genomes_project 2 146728159 146769541 + MGP_C3HHeJ_P0057677 Banf2 protein_coding protein_coding MGP_C3HHeJ_T0055575.1 MGP_C3HHeJ_G0025809.1 mouse_genomes_project 2 89290132 89291068 - MGP_C3HHeJ_P0055575 Olfr1222 protein_coding protein_coding MGP_C3HHeJ_T0055576.1 MGP_C3HHeJ_G0025809.1 mouse_genomes_project 2 89290417 89291070 - MGP_C3HHeJ_P0055576 Olfr1222 protein_coding protein_coding MGP_C3HHeJ_T0055816.1 MGP_C3HHeJ_G0025873.1 mouse_genomes_project 2 91996014 92007084 - MGP_C3HHeJ_P0055816 F2 protein_coding protein_coding MGP_C3HHeJ_T0055817.1 MGP_C3HHeJ_G0025873.1 mouse_genomes_project 2 91996023 92007077 - MGP_C3HHeJ_P0055817 F2 protein_coding protein_coding MGP_C3HHeJ_T0055818.1 MGP_C3HHeJ_G0025873.1 mouse_genomes_project 2 92001841 92007065 - F2 protein_coding processed_transcript MGP_C3HHeJ_T0054145.1 MGP_C3HHeJ_G0025392.1 mouse_genomes_project 2 34305281 34318362 - MGP_C3HHeJ_P0054145 Ndufa8 protein_coding protein_coding MGP_C3HHeJ_T0003964.1 MGP_C3HHeJ_G0003522.1 mouse_genomes_project 2 93867043 93882290 + Gm13807 antisense antisense MGP_C3HHeJ_T0054001.1 MGP_C3HHeJ_G0025372.1 mouse_genomes_project 2 32598671 32691064 + MGP_C3HHeJ_P0054001 Mapkap1 protein_coding protein_coding MGP_C3HHeJ_T0054002.1 MGP_C3HHeJ_G0025372.1 mouse_genomes_project 2 32598769 32624683 + MGP_C3HHeJ_P0054002 Mapkap1 protein_coding protein_coding MGP_C3HHeJ_T0054003.1 MGP_C3HHeJ_G0025372.1 mouse_genomes_project 2 32598772 32672194 + Mapkap1 protein_coding processed_transcript MGP_C3HHeJ_T0054004.1 MGP_C3HHeJ_G0025372.1 mouse_genomes_project 2 32598775 32821431 + MGP_C3HHeJ_P0054004 Mapkap1 protein_coding protein_coding MGP_C3HHeJ_T0054005.1 MGP_C3HHeJ_G0025372.1 mouse_genomes_project 2 32598778 32821447 + MGP_C3HHeJ_P0054005 Mapkap1 protein_coding protein_coding MGP_C3HHeJ_T0054006.1 MGP_C3HHeJ_G0025372.1 mouse_genomes_project 2 32631721 32730421 + Mapkap1 protein_coding processed_transcript MGP_C3HHeJ_T0054007.1 MGP_C3HHeJ_G0025372.1 mouse_genomes_project 2 32637574 32691221 + MGP_C3HHeJ_P0054007 Mapkap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054008.1 MGP_C3HHeJ_G0025372.1 mouse_genomes_project 2 32817464 32821802 + Mapkap1 protein_coding processed_transcript MGP_C3HHeJ_T0057825.1 MGP_C3HHeJ_G0026340.1 mouse_genomes_project 2 152288582 152292065 + MGP_C3HHeJ_P0057825 Cst10 protein_coding protein_coding MGP_C3HHeJ_T0057826.1 MGP_C3HHeJ_G0026340.1 mouse_genomes_project 2 152288774 152292065 + MGP_C3HHeJ_P0057826 Cst10 protein_coding protein_coding MGP_C3HHeJ_T0057827.1 MGP_C3HHeJ_G0026340.1 mouse_genomes_project 2 152288858 152292065 + MGP_C3HHeJ_P0057827 Cst10 protein_coding protein_coding MGP_C3HHeJ_T0056332.1 MGP_C3HHeJ_G0025992.1 mouse_genomes_project 2 113074300 113075239 - MGP_C3HHeJ_P0056332 Olfr1305 protein_coding protein_coding MGP_C3HHeJ_T0010294.1 MGP_C3HHeJ_G0008427.1 mouse_genomes_project 2 20165592 20165687 + Gm23636 miRNA miRNA MGP_C3HHeJ_T0013343.1 MGP_C3HHeJ_G0011447.1 mouse_genomes_project 2 32604888 32605248 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013321.1 MGP_C3HHeJ_G0011425.1 mouse_genomes_project 2 21778313 21779797 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001041.1 MGP_C3HHeJ_G0000978.1 mouse_genomes_project 2 36819385 36824242 + TEC TEC MGP_C3HHeJ_T0059216.1 MGP_C3HHeJ_G0026671.1 mouse_genomes_project 2 177373502 177401671 - MGP_C3HHeJ_P0059216 Ctcfl protein_coding protein_coding MGP_C3HHeJ_T0013522.1 MGP_C3HHeJ_G0011626.1 mouse_genomes_project 2 93321240 93321663 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013290.1 MGP_C3HHeJ_G0011394.1 mouse_genomes_project 2 12743526 12744322 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007338.1 MGP_C3HHeJ_G0006013.1 mouse_genomes_project 2 175351208 175427796 + Gm14266 lincRNA lincRNA MGP_C3HHeJ_T0007341.1 MGP_C3HHeJ_G0006013.1 mouse_genomes_project 2 175411175 175429954 + Gm14266 lincRNA lincRNA MGP_C3HHeJ_T0001009.1 MGP_C3HHeJ_G0000946.1 mouse_genomes_project 2 10444041 10446301 - TEC TEC MGP_C3HHeJ_T0056367.1 MGP_C3HHeJ_G0026013.1 mouse_genomes_project 2 113888628 113910139 - Ryr3 protein_coding processed_transcript MGP_C3HHeJ_T0056368.1 MGP_C3HHeJ_G0026013.1 mouse_genomes_project 2 113888637 114472366 - MGP_C3HHeJ_P0056368 Ryr3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0056369.1 MGP_C3HHeJ_G0026013.1 mouse_genomes_project 2 113888653 114289866 - MGP_C3HHeJ_P0056369 Ryr3 protein_coding protein_coding MGP_C3HHeJ_T0056370.1 MGP_C3HHeJ_G0026013.1 mouse_genomes_project 2 113888653 114472427 - MGP_C3HHeJ_P0056370 Ryr3 protein_coding protein_coding MGP_C3HHeJ_T0056371.1 MGP_C3HHeJ_G0026013.1 mouse_genomes_project 2 113889319 114472444 - Ryr3 protein_coding processed_transcript MGP_C3HHeJ_T0056372.1 MGP_C3HHeJ_G0026013.1 mouse_genomes_project 2 113894013 113897889 - Ryr3 protein_coding processed_transcript MGP_C3HHeJ_T0056373.1 MGP_C3HHeJ_G0026013.1 mouse_genomes_project 2 114112509 114164522 - Ryr3 protein_coding retained_intron MGP_C3HHeJ_T0056374.1 MGP_C3HHeJ_G0026013.1 mouse_genomes_project 2 114223257 114472438 - Ryr3 protein_coding retained_intron MGP_C3HHeJ_T0056375.1 MGP_C3HHeJ_G0026013.1 mouse_genomes_project 2 114255340 114472460 - Ryr3 protein_coding retained_intron MGP_C3HHeJ_T0057265.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131732567 131752036 + Sirpa protein_coding processed_transcript MGP_C3HHeJ_T0057266.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131732571 131752039 + Sirpa protein_coding processed_transcript MGP_C3HHeJ_T0057267.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131732571 131773399 + MGP_C3HHeJ_P0057267 Sirpa protein_coding protein_coding MGP_C3HHeJ_T0057268.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131732571 131757444 + MGP_C3HHeJ_P0057268 Sirpa protein_coding protein_coding MGP_C3HHeJ_T0057269.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131732571 131773399 + MGP_C3HHeJ_P0057269 Sirpa protein_coding protein_coding MGP_C3HHeJ_T0057270.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131732597 131752228 + Sirpa protein_coding processed_transcript MGP_C3HHeJ_T0057271.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131732646 131773407 + MGP_C3HHeJ_P0057271 Sirpa protein_coding protein_coding MGP_C3HHeJ_T0057272.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131732927 131773399 + MGP_C3HHeJ_P0057272 Sirpa protein_coding protein_coding MGP_C3HHeJ_T0057273.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131732937 131773407 + MGP_C3HHeJ_P0057273 Sirpa protein_coding protein_coding MGP_C3HHeJ_T0057274.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131733287 131773407 + MGP_C3HHeJ_P0057274 Sirpa protein_coding protein_coding MGP_C3HHeJ_T0057275.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131733294 131771768 + Sirpa protein_coding processed_transcript MGP_C3HHeJ_T0057276.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131733300 131771476 + MGP_C3HHeJ_P0057276 Sirpa protein_coding protein_coding MGP_C3HHeJ_T0057277.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131733345 131771363 + MGP_C3HHeJ_P0057277 Sirpa protein_coding protein_coding MGP_C3HHeJ_T0057278.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131761874 131769223 + Sirpa protein_coding retained_intron MGP_C3HHeJ_T0017547.1 MGP_C3HHeJ_G0015178.1 mouse_genomes_project 2 34481865 34483774 + Gm13429 processed_transcript processed_transcript MGP_C3HHeJ_T0017548.1 MGP_C3HHeJ_G0015178.1 mouse_genomes_project 2 34482336 34492409 + Gm13429 processed_transcript processed_transcript MGP_C3HHeJ_T0017549.1 MGP_C3HHeJ_G0015178.1 mouse_genomes_project 2 34490277 34492408 + Gm13429 processed_transcript processed_transcript MGP_C3HHeJ_T0007293.1 MGP_C3HHeJ_G0005974.1 mouse_genomes_project 2 164500979 164502087 - Gm14228 lincRNA lincRNA MGP_C3HHeJ_T0001026.1 MGP_C3HHeJ_G0000963.1 mouse_genomes_project 2 21839294 21841078 + TEC TEC MGP_C3HHeJ_T0013585.1 MGP_C3HHeJ_G0011689.1 mouse_genomes_project 2 119965637 119966502 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056569.1 MGP_C3HHeJ_G0026061.1 mouse_genomes_project 2 120849186 120859368 + MGP_C3HHeJ_P0056569 Dll4 protein_coding protein_coding MGP_C3HHeJ_T0056570.1 MGP_C3HHeJ_G0026061.1 mouse_genomes_project 2 120851940 120855697 + Dll4 protein_coding processed_transcript MGP_C3HHeJ_T0055134.1 MGP_C3HHeJ_G0025600.1 mouse_genomes_project 2 76266038 76276068 - MGP_C3HHeJ_P0055134 Fkbp7 protein_coding protein_coding MGP_C3HHeJ_T0055135.1 MGP_C3HHeJ_G0025600.1 mouse_genomes_project 2 76266057 76268238 - Fkbp7 protein_coding processed_transcript MGP_C3HHeJ_T0055136.1 MGP_C3HHeJ_G0025600.1 mouse_genomes_project 2 76268701 76276114 - MGP_C3HHeJ_P0055136 Fkbp7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055137.1 MGP_C3HHeJ_G0025600.1 mouse_genomes_project 2 76274359 76276083 - Fkbp7 protein_coding retained_intron MGP_C3HHeJ_T0003898.1 MGP_C3HHeJ_G0003477.1 mouse_genomes_project 2 42562358 42568405 - Arhgap15os antisense antisense MGP_C3HHeJ_T0017630.1 MGP_C3HHeJ_G0015225.1 mouse_genomes_project 2 124456609 124458736 + processed_transcript processed_transcript MGP_C3HHeJ_T0017631.1 MGP_C3HHeJ_G0015225.1 mouse_genomes_project 2 124456630 124469631 + processed_transcript processed_transcript MGP_C3HHeJ_T0007236.1 MGP_C3HHeJ_G0005927.1 mouse_genomes_project 2 126147569 126151975 - 4930583P06Rik lincRNA lincRNA MGP_C3HHeJ_T0055825.1 MGP_C3HHeJ_G0025875.1 mouse_genomes_project 2 92020423 92043591 + MGP_C3HHeJ_P0055825 Arhgap1 protein_coding protein_coding MGP_C3HHeJ_T0055826.1 MGP_C3HHeJ_G0025875.1 mouse_genomes_project 2 92020681 92043591 + MGP_C3HHeJ_P0055826 Arhgap1 protein_coding protein_coding MGP_C3HHeJ_T0055827.1 MGP_C3HHeJ_G0025875.1 mouse_genomes_project 2 92020785 92043591 + MGP_C3HHeJ_P0055827 Arhgap1 protein_coding protein_coding MGP_C3HHeJ_T0055828.1 MGP_C3HHeJ_G0025875.1 mouse_genomes_project 2 92022061 92025095 + Arhgap1 protein_coding processed_transcript MGP_C3HHeJ_T0055829.1 MGP_C3HHeJ_G0025875.1 mouse_genomes_project 2 92022061 92025097 + Arhgap1 protein_coding processed_transcript MGP_C3HHeJ_T0055830.1 MGP_C3HHeJ_G0025875.1 mouse_genomes_project 2 92022310 92038906 + Arhgap1 protein_coding processed_transcript MGP_C3HHeJ_T0055831.1 MGP_C3HHeJ_G0025875.1 mouse_genomes_project 2 92023771 92043567 + MGP_C3HHeJ_P0055831 Arhgap1 protein_coding protein_coding MGP_C3HHeJ_T0055832.1 MGP_C3HHeJ_G0025875.1 mouse_genomes_project 2 92039093 92041939 + Arhgap1 protein_coding processed_transcript MGP_C3HHeJ_T0055833.1 MGP_C3HHeJ_G0025875.1 mouse_genomes_project 2 92040508 92041625 + Arhgap1 protein_coding processed_transcript MGP_C3HHeJ_T0055592.1 MGP_C3HHeJ_G0025822.1 mouse_genomes_project 2 89581909 89582827 - MGP_C3HHeJ_P0055592 Olfr1239 protein_coding protein_coding MGP_C3HHeJ_T0059554.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186183414 186184653 - MGP_C3HHeJ_P0059554 Uckl1 protein_coding protein_coding MGP_C3HHeJ_T0059555.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186183417 186184063 - Uckl1 protein_coding retained_intron MGP_C3HHeJ_T0059556.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186183428 186196242 - MGP_C3HHeJ_P0059556 Uckl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059557.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186183430 186184147 - Uckl1 protein_coding retained_intron MGP_C3HHeJ_T0059558.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186183496 186186805 - Uckl1 protein_coding retained_intron MGP_C3HHeJ_T0059559.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186183576 186196238 - MGP_C3HHeJ_P0059559 Uckl1 protein_coding protein_coding MGP_C3HHeJ_T0059560.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186183879 186187392 - MGP_C3HHeJ_P0059560 Uckl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059561.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186183918 186187392 - Uckl1 protein_coding retained_intron MGP_C3HHeJ_T0059562.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186184029 186185640 - Uckl1 protein_coding retained_intron MGP_C3HHeJ_T0059563.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186184115 186187401 - Uckl1 protein_coding retained_intron MGP_C3HHeJ_T0059564.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186184271 186188741 - Uckl1 protein_coding processed_transcript MGP_C3HHeJ_T0059565.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186184626 186186423 - Uckl1 protein_coding processed_transcript MGP_C3HHeJ_T0059566.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186186589 186188765 - Uckl1 protein_coding retained_intron MGP_C3HHeJ_T0059567.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186187517 186199161 - MGP_C3HHeJ_P0059567 Uckl1 protein_coding protein_coding MGP_C3HHeJ_T0059568.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186187562 186189099 - Uckl1 protein_coding retained_intron MGP_C3HHeJ_T0059569.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186187573 186193217 - MGP_C3HHeJ_P0059569 Uckl1 protein_coding protein_coding MGP_C3HHeJ_T0059570.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186188549 186196248 - Uckl1 protein_coding retained_intron MGP_C3HHeJ_T0055602.1 MGP_C3HHeJ_G0025829.1 mouse_genomes_project 2 89766639 89767584 - MGP_C3HHeJ_P0055602 Olfr1247 protein_coding protein_coding MGP_C3HHeJ_T0055603.1 MGP_C3HHeJ_G0025829.1 mouse_genomes_project 2 89766639 89771689 - MGP_C3HHeJ_P0055603 Olfr1247 protein_coding protein_coding MGP_C3HHeJ_T0055604.1 MGP_C3HHeJ_G0025829.1 mouse_genomes_project 2 89767340 89769183 - MGP_C3HHeJ_P0055604 Olfr1247 protein_coding protein_coding MGP_C3HHeJ_T0003957.1 MGP_C3HHeJ_G0003517.1 mouse_genomes_project 2 83489455 83489915 - Gm13686 antisense antisense MGP_C3HHeJ_T0057966.1 MGP_C3HHeJ_G0026381.1 mouse_genomes_project 2 155558332 155563057 - MGP_C3HHeJ_P0057966 Defb22 protein_coding protein_coding MGP_C3HHeJ_T0007310.1 MGP_C3HHeJ_G0005990.1 mouse_genomes_project 2 170314311 170326765 + 5031425F14Rik lincRNA lincRNA MGP_C3HHeJ_T0013689.1 MGP_C3HHeJ_G0011793.1 mouse_genomes_project 2 159702180 159702662 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055601.1 MGP_C3HHeJ_G0025828.1 mouse_genomes_project 2 89749955 89750900 - MGP_C3HHeJ_P0055601 Olfr1246 protein_coding protein_coding MGP_C3HHeJ_T0101918.1 MGP_C3HHeJ_G0039883.1 mouse_genomes_project 2 90351107 90352032 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0054444.1 MGP_C3HHeJ_G0025463.1 mouse_genomes_project 2 50790231 50809737 + MGP_C3HHeJ_P0054444 Tnfaip6 protein_coding protein_coding MGP_C3HHeJ_T0099191.1 MGP_C3HHeJ_G0037385.1 mouse_genomes_project 2 47015685 47015805 - Gm25338 snRNA snRNA MGP_C3HHeJ_T0013505.1 MGP_C3HHeJ_G0011609.1 mouse_genomes_project 2 87585964 87586376 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001049.1 MGP_C3HHeJ_G0000986.1 mouse_genomes_project 2 68176970 68180575 + TEC TEC MGP_C3HHeJ_T0003852.1 MGP_C3HHeJ_G0003441.1 mouse_genomes_project 2 23768463 23769755 + Gm13554 antisense antisense MGP_C3HHeJ_T0007230.1 MGP_C3HHeJ_G0005923.1 mouse_genomes_project 2 119749447 119755401 - A930104D05Rik lincRNA lincRNA MGP_C3HHeJ_T0007231.1 MGP_C3HHeJ_G0005923.1 mouse_genomes_project 2 119752237 119755233 - A930104D05Rik lincRNA lincRNA MGP_C3HHeJ_T0052984.1 MGP_C3HHeJ_G0025212.1 mouse_genomes_project 2 23932947 23941025 - MGP_C3HHeJ_P0052984 Lhx3 protein_coding protein_coding MGP_C3HHeJ_T0052985.1 MGP_C3HHeJ_G0025212.1 mouse_genomes_project 2 23932951 23935602 - Lhx3 protein_coding retained_intron MGP_C3HHeJ_T0052986.1 MGP_C3HHeJ_G0025212.1 mouse_genomes_project 2 23932951 23939311 - MGP_C3HHeJ_P0052986 Lhx3 protein_coding protein_coding MGP_C3HHeJ_T0052987.1 MGP_C3HHeJ_G0025212.1 mouse_genomes_project 2 23935211 23936177 - Lhx3 protein_coding retained_intron MGP_C3HHeJ_T0100491.1 MGP_C3HHeJ_G0038685.1 mouse_genomes_project 2 146964563 146964801 - Snord17 snoRNA snoRNA MGP_C3HHeJ_T0053274.1 MGP_C3HHeJ_G0025264.1 mouse_genomes_project 2 26520141 26527678 - MGP_C3HHeJ_P0053274 Spaca9 protein_coding protein_coding MGP_C3HHeJ_T0053275.1 MGP_C3HHeJ_G0025264.1 mouse_genomes_project 2 26520145 26527710 - MGP_C3HHeJ_P0053275 Spaca9 protein_coding protein_coding MGP_C3HHeJ_T0053276.1 MGP_C3HHeJ_G0025264.1 mouse_genomes_project 2 26521073 26527754 - Spaca9 protein_coding processed_transcript MGP_C3HHeJ_T0053277.1 MGP_C3HHeJ_G0025264.1 mouse_genomes_project 2 26521768 26527701 - Spaca9 protein_coding processed_transcript MGP_C3HHeJ_T0013686.1 MGP_C3HHeJ_G0011790.1 mouse_genomes_project 2 159643266 159643526 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001048.1 MGP_C3HHeJ_G0000985.1 mouse_genomes_project 2 67148856 67153742 + TEC TEC MGP_C3HHeJ_T0013685.1 MGP_C3HHeJ_G0011789.1 mouse_genomes_project 2 159373258 159373801 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058822.1 MGP_C3HHeJ_G0026580.1 mouse_genomes_project 2 168378321 168382428 - MGP_C3HHeJ_P0058822 Wfdc16 protein_coding protein_coding MGP_C3HHeJ_T0001054.1 MGP_C3HHeJ_G0000991.1 mouse_genomes_project 2 68300968 68304741 + TEC TEC MGP_C3HHeJ_T0056343.1 MGP_C3HHeJ_G0026003.1 mouse_genomes_project 2 113463185 113474749 + MGP_C3HHeJ_P0056343 Lpcat4 protein_coding protein_coding MGP_C3HHeJ_T0056344.1 MGP_C3HHeJ_G0026003.1 mouse_genomes_project 2 113465190 113471618 + Lpcat4 protein_coding processed_transcript MGP_C3HHeJ_T0056345.1 MGP_C3HHeJ_G0026003.1 mouse_genomes_project 2 113465687 113466477 + Lpcat4 protein_coding processed_transcript MGP_C3HHeJ_T0056346.1 MGP_C3HHeJ_G0026003.1 mouse_genomes_project 2 113472142 113474531 + Lpcat4 protein_coding processed_transcript MGP_C3HHeJ_T0055584.1 MGP_C3HHeJ_G0025816.1 mouse_genomes_project 2 89446612 89447530 - MGP_C3HHeJ_P0055584 Olfr1230 protein_coding protein_coding MGP_C3HHeJ_T0058714.1 MGP_C3HHeJ_G0026540.1 mouse_genomes_project 2 167155618 167161869 - MGP_C3HHeJ_P0058714 Fitm2 protein_coding protein_coding MGP_C3HHeJ_T0058920.1 MGP_C3HHeJ_G0026606.1 mouse_genomes_project 2 168892260 169021664 - MGP_C3HHeJ_P0058920 Cdh22 protein_coding protein_coding MGP_C3HHeJ_T0058921.1 MGP_C3HHeJ_G0026606.1 mouse_genomes_project 2 168893080 168965619 - MGP_C3HHeJ_P0058921 Cdh22 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057332.1 MGP_C3HHeJ_G0026224.1 mouse_genomes_project 2 132598514 132614778 + Vps16 protein_coding retained_intron MGP_C3HHeJ_T0057333.1 MGP_C3HHeJ_G0026224.1 mouse_genomes_project 2 132598540 132620594 + MGP_C3HHeJ_P0057333 Vps16 protein_coding protein_coding MGP_C3HHeJ_T0057334.1 MGP_C3HHeJ_G0026224.1 mouse_genomes_project 2 132598540 132616242 + MGP_C3HHeJ_P0057334 Vps16 protein_coding protein_coding MGP_C3HHeJ_T0057335.1 MGP_C3HHeJ_G0026224.1 mouse_genomes_project 2 132598579 132616621 + Vps16 protein_coding processed_transcript MGP_C3HHeJ_T0057336.1 MGP_C3HHeJ_G0026224.1 mouse_genomes_project 2 132613960 132615392 + Vps16 protein_coding retained_intron MGP_C3HHeJ_T0057337.1 MGP_C3HHeJ_G0026224.1 mouse_genomes_project 2 132615954 132618030 + Vps16 protein_coding retained_intron MGP_C3HHeJ_T0057338.1 MGP_C3HHeJ_G0026224.1 mouse_genomes_project 2 132616646 132617632 + Vps16 protein_coding retained_intron MGP_C3HHeJ_T0057339.1 MGP_C3HHeJ_G0026224.1 mouse_genomes_project 2 132617932 132619724 + Vps16 protein_coding retained_intron MGP_C3HHeJ_T0057340.1 MGP_C3HHeJ_G0026224.1 mouse_genomes_project 2 132619491 132620059 + Vps16 protein_coding retained_intron MGP_C3HHeJ_T0054895.1 MGP_C3HHeJ_G0025546.1 mouse_genomes_project 2 70038411 70039272 - MGP_C3HHeJ_P0054895 Gm26558 protein_coding protein_coding MGP_C3HHeJ_T0098387.1 MGP_C3HHeJ_G0036593.1 mouse_genomes_project 2 321370 324181 - Gm37525 sense_intronic sense_intronic MGP_C3HHeJ_T0055410.1 MGP_C3HHeJ_G0025661.1 mouse_genomes_project 2 85377371 85378316 + MGP_C3HHeJ_P0055410 Olfr998 protein_coding protein_coding MGP_C3HHeJ_T0058374.1 MGP_C3HHeJ_G0026476.1 mouse_genomes_project 2 159440459 159461523 - MGP_C3HHeJ_P0058374 protein_coding protein_coding MGP_C3HHeJ_T0058375.1 MGP_C3HHeJ_G0026476.1 mouse_genomes_project 2 159440470 159456007 - MGP_C3HHeJ_P0058375 protein_coding protein_coding MGP_C3HHeJ_T0058376.1 MGP_C3HHeJ_G0026476.1 mouse_genomes_project 2 159454684 159461490 - protein_coding retained_intron MGP_C3HHeJ_T0058377.1 MGP_C3HHeJ_G0026476.1 mouse_genomes_project 2 159459240 159461517 - MGP_C3HHeJ_P0058377 protein_coding protein_coding MGP_C3HHeJ_T0007284.1 MGP_C3HHeJ_G0005967.1 mouse_genomes_project 2 159896939 159902591 + Gm14168 lincRNA lincRNA MGP_C3HHeJ_T0004004.1 MGP_C3HHeJ_G0003549.1 mouse_genomes_project 2 129776513 129785380 + Gm14244 antisense antisense MGP_C3HHeJ_T0058816.1 MGP_C3HHeJ_G0026576.1 mouse_genomes_project 2 168326030 168331284 - MGP_C3HHeJ_P0058816 Eppin protein_coding protein_coding MGP_C3HHeJ_T0056566.1 MGP_C3HHeJ_G0026060.1 mouse_genomes_project 2 120812522 120819379 + Vps18 protein_coding retained_intron MGP_C3HHeJ_T0056567.1 MGP_C3HHeJ_G0026060.1 mouse_genomes_project 2 120812524 120822309 + MGP_C3HHeJ_P0056567 Vps18 protein_coding protein_coding MGP_C3HHeJ_T0056568.1 MGP_C3HHeJ_G0026060.1 mouse_genomes_project 2 120812569 120822182 + Vps18 protein_coding processed_transcript MGP_C3HHeJ_T0098281.1 MGP_C3HHeJ_G0036493.1 mouse_genomes_project 2 104764100 104764239 + Gm24644 scaRNA scaRNA MGP_C3HHeJ_T0013460.1 MGP_C3HHeJ_G0011564.1 mouse_genomes_project 2 73492974 73493975 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052215.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8723576 8809424 - MGP_C3HHeJ_P0052215 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052216.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8723934 8755861 - MGP_C3HHeJ_P0052216 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052217.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8723967 8755861 - MGP_C3HHeJ_P0052217 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052218.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8723969 8755861 - MGP_C3HHeJ_P0052218 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052219.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8723969 8809269 - MGP_C3HHeJ_P0052219 Pfkfb3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052220.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8723971 8752143 - Pfkfb3 protein_coding processed_transcript MGP_C3HHeJ_T0052221.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8726550 8755861 - MGP_C3HHeJ_P0052221 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052222.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8726550 8755861 - MGP_C3HHeJ_P0052222 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052223.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8726550 8755861 - MGP_C3HHeJ_P0052223 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052224.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8726550 8755460 - MGP_C3HHeJ_P0052224 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052225.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8727907 8755850 - MGP_C3HHeJ_P0052225 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052226.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8727907 8755850 - MGP_C3HHeJ_P0052226 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052227.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8730098 8755861 - MGP_C3HHeJ_P0052227 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052228.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8730110 8755861 - MGP_C3HHeJ_P0052228 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052229.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8733645 8755835 - Pfkfb3 protein_coding retained_intron MGP_C3HHeJ_T0052230.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8734755 8735857 - Pfkfb3 protein_coding retained_intron MGP_C3HHeJ_T0052231.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8744092 8755777 - Pfkfb3 protein_coding processed_transcript MGP_C3HHeJ_T0052232.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8746055 8755557 - Pfkfb3 protein_coding retained_intron MGP_C3HHeJ_T0052233.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8746355 8752109 - Pfkfb3 protein_coding processed_transcript MGP_C3HHeJ_T0052234.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8746382 8755056 - Pfkfb3 protein_coding retained_intron MGP_C3HHeJ_T0052235.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8747651 8754623 - Pfkfb3 protein_coding processed_transcript MGP_C3HHeJ_T0013311.1 MGP_C3HHeJ_G0011415.1 mouse_genomes_project 2 17576125 17576924 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059085.1 MGP_C3HHeJ_G0026633.1 mouse_genomes_project 2 171465459 171474029 + MGP_C3HHeJ_P0059085 Snai1 protein_coding protein_coding MGP_C3HHeJ_T0057971.1 MGP_C3HHeJ_G0026386.1 mouse_genomes_project 2 155646912 155649113 + MGP_C3HHeJ_P0057971 Defb21 protein_coding protein_coding MGP_C3HHeJ_T0001024.1 MGP_C3HHeJ_G0000961.1 mouse_genomes_project 2 12951313 12953054 + TEC TEC MGP_C3HHeJ_T0056448.1 MGP_C3HHeJ_G0026031.1 mouse_genomes_project 2 119585908 119601123 + MGP_C3HHeJ_P0056448 Thbs1 protein_coding protein_coding MGP_C3HHeJ_T0056449.1 MGP_C3HHeJ_G0026031.1 mouse_genomes_project 2 119596932 119597757 + Thbs1 protein_coding processed_transcript MGP_C3HHeJ_T0059410.1 MGP_C3HHeJ_G0026722.1 mouse_genomes_project 2 185536360 185556346 - MGP_C3HHeJ_P0059410 Nkain4 protein_coding protein_coding MGP_C3HHeJ_T0059411.1 MGP_C3HHeJ_G0026722.1 mouse_genomes_project 2 185536360 185544733 - MGP_C3HHeJ_P0059411 Nkain4 protein_coding protein_coding MGP_C3HHeJ_T0059412.1 MGP_C3HHeJ_G0026722.1 mouse_genomes_project 2 185536360 185556346 - MGP_C3HHeJ_P0059412 Nkain4 protein_coding protein_coding MGP_C3HHeJ_T0059413.1 MGP_C3HHeJ_G0026722.1 mouse_genomes_project 2 185537573 185556267 - MGP_C3HHeJ_P0059413 Nkain4 protein_coding protein_coding MGP_C3HHeJ_T0059414.1 MGP_C3HHeJ_G0026722.1 mouse_genomes_project 2 185538769 185556341 - MGP_C3HHeJ_P0059414 Nkain4 protein_coding protein_coding MGP_C3HHeJ_T0059415.1 MGP_C3HHeJ_G0026722.1 mouse_genomes_project 2 185544819 185555966 - Nkain4 protein_coding processed_transcript MGP_C3HHeJ_T0059416.1 MGP_C3HHeJ_G0026722.1 mouse_genomes_project 2 185545395 185551246 - MGP_C3HHeJ_P0059416 Nkain4 protein_coding protein_coding MGP_C3HHeJ_T0058300.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159270672 159301608 + Cep250 protein_coding retained_intron MGP_C3HHeJ_T0058301.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159270777 159313465 + MGP_C3HHeJ_P0058301 Cep250 protein_coding protein_coding MGP_C3HHeJ_T0058302.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159270777 159313465 + MGP_C3HHeJ_P0058302 Cep250 protein_coding protein_coding MGP_C3HHeJ_T0058303.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159270777 159313465 + MGP_C3HHeJ_P0058303 Cep250 protein_coding protein_coding MGP_C3HHeJ_T0058304.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159270791 159289470 + MGP_C3HHeJ_P0058304 Cep250 protein_coding protein_coding MGP_C3HHeJ_T0058305.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159270813 159282969 + MGP_C3HHeJ_P0058305 Cep250 protein_coding protein_coding MGP_C3HHeJ_T0058307.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159291404 159314857 + Cep250 protein_coding retained_intron MGP_C3HHeJ_T0058308.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159294562 159296450 + Cep250 protein_coding retained_intron MGP_C3HHeJ_T0058309.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159300877 159304574 + MGP_C3HHeJ_P0058309 Cep250 protein_coding protein_coding MGP_C3HHeJ_T0058310.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159300909 159305567 + MGP_C3HHeJ_P0058310 Cep250 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007221.1 MGP_C3HHeJ_G0005916.1 mouse_genomes_project 2 118289469 118303575 + D330050G23Rik lincRNA lincRNA MGP_C3HHeJ_T0007222.1 MGP_C3HHeJ_G0005916.1 mouse_genomes_project 2 118289492 118303410 + D330050G23Rik lincRNA lincRNA MGP_C3HHeJ_T0007223.1 MGP_C3HHeJ_G0005916.1 mouse_genomes_project 2 118289511 118295455 + D330050G23Rik lincRNA lincRNA MGP_C3HHeJ_T0101390.1 MGP_C3HHeJ_G0039440.1 mouse_genomes_project 2 36994376 37011111 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0013571.1 MGP_C3HHeJ_G0011675.1 mouse_genomes_project 2 112576725 112672999 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000995.1 MGP_C3HHeJ_G0000932.1 mouse_genomes_project 2 8418540 8421212 - TEC TEC MGP_C3HHeJ_T0057061.1 MGP_C3HHeJ_G0026157.1 mouse_genomes_project 2 128150562 128163924 + MGP_C3HHeJ_P0057061 Dtwd1 protein_coding protein_coding MGP_C3HHeJ_T0057062.1 MGP_C3HHeJ_G0026157.1 mouse_genomes_project 2 128152966 128163927 + MGP_C3HHeJ_P0057062 Dtwd1 protein_coding protein_coding MGP_C3HHeJ_T0058378.1 MGP_C3HHeJ_G0026477.1 mouse_genomes_project 2 159461375 159463130 + MGP_C3HHeJ_P0058378 Romo1 protein_coding protein_coding MGP_C3HHeJ_T0058379.1 MGP_C3HHeJ_G0026477.1 mouse_genomes_project 2 159461569 159463127 + MGP_C3HHeJ_P0058379 Romo1 protein_coding protein_coding MGP_C3HHeJ_T0058380.1 MGP_C3HHeJ_G0026477.1 mouse_genomes_project 2 159461573 159463116 + MGP_C3HHeJ_P0058380 Romo1 protein_coding protein_coding MGP_C3HHeJ_T0058381.1 MGP_C3HHeJ_G0026477.1 mouse_genomes_project 2 159461576 159463127 + MGP_C3HHeJ_P0058381 Romo1 protein_coding protein_coding MGP_C3HHeJ_T0017627.1 MGP_C3HHeJ_G0015224.1 mouse_genomes_project 2 122468921 122485724 + AV039307 processed_transcript processed_transcript MGP_C3HHeJ_T0017628.1 MGP_C3HHeJ_G0015224.1 mouse_genomes_project 2 122468933 122485858 + AV039307 processed_transcript processed_transcript MGP_C3HHeJ_T0017629.1 MGP_C3HHeJ_G0015224.1 mouse_genomes_project 2 122485401 122485725 + AV039307 processed_transcript processed_transcript MGP_C3HHeJ_T0058063.1 MGP_C3HHeJ_G0026411.1 mouse_genomes_project 2 156538962 156671507 - MGP_C3HHeJ_P0058063 Nol4l protein_coding protein_coding MGP_C3HHeJ_T0058064.1 MGP_C3HHeJ_G0026411.1 mouse_genomes_project 2 156549326 156579284 - Nol4l protein_coding processed_transcript MGP_C3HHeJ_T0058065.1 MGP_C3HHeJ_G0026411.1 mouse_genomes_project 2 156594654 156628834 - Nol4l protein_coding processed_transcript MGP_C3HHeJ_T0058066.1 MGP_C3HHeJ_G0026411.1 mouse_genomes_project 2 156598453 156615385 - Nol4l protein_coding processed_transcript MGP_C3HHeJ_T0055502.1 MGP_C3HHeJ_G0025742.1 mouse_genomes_project 2 87712679 87713609 + MGP_C3HHeJ_P0055502 protein_coding protein_coding MGP_C3HHeJ_T0010352.1 MGP_C3HHeJ_G0008485.1 mouse_genomes_project 2 94726261 94726326 + Mir129b miRNA miRNA MGP_C3HHeJ_T0054062.1 MGP_C3HHeJ_G0025380.1 mouse_genomes_project 2 33160766 33180295 - MGP_C3HHeJ_P0054062 protein_coding unknown_likely_coding MGP_C3HHeJ_T0054063.1 MGP_C3HHeJ_G0025380.1 mouse_genomes_project 2 33165085 33180335 - protein_coding processed_transcript MGP_C3HHeJ_T0054064.1 MGP_C3HHeJ_G0025380.1 mouse_genomes_project 2 33174825 33176889 - MGP_C3HHeJ_P0054064 protein_coding protein_coding MGP_C3HHeJ_T0054065.1 MGP_C3HHeJ_G0025380.1 mouse_genomes_project 2 33174934 33176914 - protein_coding retained_intron MGP_C3HHeJ_T0054066.1 MGP_C3HHeJ_G0025380.1 mouse_genomes_project 2 33174946 33177658 - protein_coding processed_transcript MGP_C3HHeJ_T0054067.1 MGP_C3HHeJ_G0025380.1 mouse_genomes_project 2 33176299 33180350 - protein_coding retained_intron MGP_C3HHeJ_T0054068.1 MGP_C3HHeJ_G0025380.1 mouse_genomes_project 2 33176904 33180315 - protein_coding processed_transcript MGP_C3HHeJ_T0059342.1 MGP_C3HHeJ_G0026704.1 mouse_genomes_project 2 184719957 184724758 + MGP_C3HHeJ_P0059342 Adrm1 protein_coding protein_coding MGP_C3HHeJ_T0059343.1 MGP_C3HHeJ_G0026704.1 mouse_genomes_project 2 184720067 184720911 + Adrm1 protein_coding retained_intron MGP_C3HHeJ_T0059344.1 MGP_C3HHeJ_G0026704.1 mouse_genomes_project 2 184720078 184724756 + Adrm1 protein_coding retained_intron MGP_C3HHeJ_T0059345.1 MGP_C3HHeJ_G0026704.1 mouse_genomes_project 2 184720078 184721753 + Adrm1 protein_coding retained_intron MGP_C3HHeJ_T0059346.1 MGP_C3HHeJ_G0026704.1 mouse_genomes_project 2 184720086 184724607 + Adrm1 protein_coding retained_intron MGP_C3HHeJ_T0059347.1 MGP_C3HHeJ_G0026704.1 mouse_genomes_project 2 184720131 184724758 + Adrm1 protein_coding processed_transcript MGP_C3HHeJ_T0059348.1 MGP_C3HHeJ_G0026704.1 mouse_genomes_project 2 184720625 184724756 + Adrm1 protein_coding retained_intron MGP_C3HHeJ_T0059349.1 MGP_C3HHeJ_G0026704.1 mouse_genomes_project 2 184723826 184724754 + Adrm1 protein_coding retained_intron MGP_C3HHeJ_T0001043.1 MGP_C3HHeJ_G0000980.1 mouse_genomes_project 2 37084527 37085300 - TEC TEC MGP_C3HHeJ_T0059004.1 MGP_C3HHeJ_G0026620.1 mouse_genomes_project 2 170435425 170586255 - MGP_C3HHeJ_P0059004 Prex1 protein_coding protein_coding MGP_C3HHeJ_T0059005.1 MGP_C3HHeJ_G0026620.1 mouse_genomes_project 2 170436053 170451148 - MGP_C3HHeJ_P0059005 Prex1 protein_coding protein_coding MGP_C3HHeJ_T0059006.1 MGP_C3HHeJ_G0026620.1 mouse_genomes_project 2 170437404 170442065 - Prex1 protein_coding processed_transcript MGP_C3HHeJ_T0059007.1 MGP_C3HHeJ_G0026620.1 mouse_genomes_project 2 170468769 170472179 - Prex1 protein_coding retained_intron MGP_C3HHeJ_T0059008.1 MGP_C3HHeJ_G0026620.1 mouse_genomes_project 2 170504035 170576417 - Prex1 protein_coding processed_transcript MGP_C3HHeJ_T0059009.1 MGP_C3HHeJ_G0026620.1 mouse_genomes_project 2 170514998 170586328 - Prex1 protein_coding retained_intron MGP_C3HHeJ_T0059010.1 MGP_C3HHeJ_G0026620.1 mouse_genomes_project 2 170515211 170586139 - Prex1 protein_coding retained_intron MGP_C3HHeJ_T0099199.1 MGP_C3HHeJ_G0037393.1 mouse_genomes_project 2 79038230 79038333 + Gm22606 snRNA snRNA MGP_C3HHeJ_T0055001.1 MGP_C3HHeJ_G0025563.1 mouse_genomes_project 2 72420982 72468175 - MGP_C3HHeJ_P0055001 Sp3 protein_coding protein_coding MGP_C3HHeJ_T0055002.1 MGP_C3HHeJ_G0025563.1 mouse_genomes_project 2 72421203 72468155 - MGP_C3HHeJ_P0055002 Sp3 protein_coding protein_coding MGP_C3HHeJ_T0055003.1 MGP_C3HHeJ_G0025563.1 mouse_genomes_project 2 72421207 72466526 - Sp3 protein_coding processed_transcript MGP_C3HHeJ_T0055004.1 MGP_C3HHeJ_G0025563.1 mouse_genomes_project 2 72422867 72425672 - Sp3 protein_coding processed_transcript MGP_C3HHeJ_T0055005.1 MGP_C3HHeJ_G0025563.1 mouse_genomes_project 2 72431492 72457706 - Sp3 protein_coding processed_transcript MGP_C3HHeJ_T0003818.1 MGP_C3HHeJ_G0003414.1 mouse_genomes_project 2 2054321 2058175 + 4930551O13Rik antisense antisense MGP_C3HHeJ_T0007054.1 MGP_C3HHeJ_G0005782.1 mouse_genomes_project 2 6762488 6770607 - Gm13218 lincRNA lincRNA MGP_C3HHeJ_T0057242.1 MGP_C3HHeJ_G0026202.1 mouse_genomes_project 2 131224288 131248596 + MGP_C3HHeJ_P0057242 Polr1b protein_coding protein_coding MGP_C3HHeJ_T0057243.1 MGP_C3HHeJ_G0026202.1 mouse_genomes_project 2 131224348 131253748 + MGP_C3HHeJ_P0057243 Polr1b protein_coding protein_coding MGP_C3HHeJ_T0057244.1 MGP_C3HHeJ_G0026202.1 mouse_genomes_project 2 131243499 131246317 + Polr1b protein_coding processed_transcript MGP_C3HHeJ_T0057245.1 MGP_C3HHeJ_G0026202.1 mouse_genomes_project 2 131246481 131250790 + Polr1b protein_coding processed_transcript MGP_C3HHeJ_T0057246.1 MGP_C3HHeJ_G0026202.1 mouse_genomes_project 2 131249538 131251490 + Polr1b protein_coding processed_transcript MGP_C3HHeJ_T0017551.1 MGP_C3HHeJ_G0015180.1 mouse_genomes_project 2 48975193 49051342 + Gm13483 processed_transcript processed_transcript MGP_C3HHeJ_T0017552.1 MGP_C3HHeJ_G0015180.1 mouse_genomes_project 2 48975247 49121834 + Gm13483 processed_transcript processed_transcript MGP_C3HHeJ_T0058299.1 MGP_C3HHeJ_G0026467.1 mouse_genomes_project 2 159250026 159254394 - MGP_C3HHeJ_P0058299 Gdf5 protein_coding protein_coding MGP_C3HHeJ_T0013337.1 MGP_C3HHeJ_G0011441.1 mouse_genomes_project 2 30039876 30041282 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007133.1 MGP_C3HHeJ_G0005845.1 mouse_genomes_project 2 66373708 66413110 - Gm13598 lincRNA lincRNA MGP_C3HHeJ_T0007040.1 MGP_C3HHeJ_G0005772.1 mouse_genomes_project 2 1123346 1129527 + Gm13189 lincRNA lincRNA MGP_C3HHeJ_T0056174.1 MGP_C3HHeJ_G0025939.1 mouse_genomes_project 2 105361427 105441054 + MGP_C3HHeJ_P0056174 Cstf3 protein_coding protein_coding MGP_C3HHeJ_T0056175.1 MGP_C3HHeJ_G0025939.1 mouse_genomes_project 2 105361436 105385448 + Cstf3 protein_coding retained_intron MGP_C3HHeJ_T0056176.1 MGP_C3HHeJ_G0025939.1 mouse_genomes_project 2 105361522 105383455 + Cstf3 protein_coding retained_intron MGP_C3HHeJ_T0056177.1 MGP_C3HHeJ_G0025939.1 mouse_genomes_project 2 105398280 105436403 + MGP_C3HHeJ_P0056177 Cstf3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0056178.1 MGP_C3HHeJ_G0025939.1 mouse_genomes_project 2 105431136 105439064 + Cstf3 protein_coding processed_transcript MGP_C3HHeJ_T0056180.1 MGP_C3HHeJ_G0025939.1 mouse_genomes_project 2 105438761 105439805 + Cstf3 protein_coding processed_transcript MGP_C3HHeJ_T0056181.1 MGP_C3HHeJ_G0025939.1 mouse_genomes_project 2 105439291 105440364 + Cstf3 protein_coding processed_transcript MGP_C3HHeJ_T0059086.1 MGP_C3HHeJ_G0026634.1 mouse_genomes_project 2 171553415 171576755 - MGP_C3HHeJ_P0059086 Ube2v1 protein_coding protein_coding MGP_C3HHeJ_T0059087.1 MGP_C3HHeJ_G0026634.1 mouse_genomes_project 2 171560699 171576758 - Ube2v1 protein_coding retained_intron MGP_C3HHeJ_T0052102.1 MGP_C3HHeJ_G0025056.1 mouse_genomes_project 2 2831483 2881106 - MGP_C3HHeJ_P0052102 Cdc123 protein_coding protein_coding MGP_C3HHeJ_T0052103.1 MGP_C3HHeJ_G0025056.1 mouse_genomes_project 2 2831854 2835788 - Cdc123 protein_coding processed_transcript MGP_C3HHeJ_T0052104.1 MGP_C3HHeJ_G0025056.1 mouse_genomes_project 2 2835550 2841557 - Cdc123 protein_coding retained_intron MGP_C3HHeJ_T0052105.1 MGP_C3HHeJ_G0025056.1 mouse_genomes_project 2 2842014 2847957 - Cdc123 protein_coding processed_transcript MGP_C3HHeJ_T0052106.1 MGP_C3HHeJ_G0025056.1 mouse_genomes_project 2 2842133 2869086 - Cdc123 protein_coding retained_intron MGP_C3HHeJ_T0052107.1 MGP_C3HHeJ_G0025056.1 mouse_genomes_project 2 2846689 2869581 - MGP_C3HHeJ_P0052107 Cdc123 protein_coding protein_coding MGP_C3HHeJ_T0052108.1 MGP_C3HHeJ_G0025056.1 mouse_genomes_project 2 2847852 2880883 - Cdc123 protein_coding retained_intron MGP_C3HHeJ_T0052109.1 MGP_C3HHeJ_G0025056.1 mouse_genomes_project 2 2857613 2859608 - Cdc123 protein_coding retained_intron MGP_C3HHeJ_T0052110.1 MGP_C3HHeJ_G0025056.1 mouse_genomes_project 2 2859304 2880793 - Cdc123 protein_coding processed_transcript MGP_C3HHeJ_T0057037.1 MGP_C3HHeJ_G0026152.1 mouse_genomes_project 2 127707577 127754703 - MGP_C3HHeJ_P0057037 Secisbp2l protein_coding protein_coding MGP_C3HHeJ_T0057038.1 MGP_C3HHeJ_G0026152.1 mouse_genomes_project 2 127715371 127730953 - MGP_C3HHeJ_P0057038 Secisbp2l protein_coding protein_coding MGP_C3HHeJ_T0057039.1 MGP_C3HHeJ_G0026152.1 mouse_genomes_project 2 127720992 127722881 - Secisbp2l protein_coding retained_intron MGP_C3HHeJ_T0099226.1 MGP_C3HHeJ_G0037420.1 mouse_genomes_project 2 161151502 161151598 + Gm23463 snRNA snRNA MGP_C3HHeJ_T0001057.1 MGP_C3HHeJ_G0000994.1 mouse_genomes_project 2 78636637 78769031 + TEC TEC MGP_C3HHeJ_T0013412.1 MGP_C3HHeJ_G0011516.1 mouse_genomes_project 2 56327862 56328405 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052761.1 MGP_C3HHeJ_G0025168.1 mouse_genomes_project 2 22920469 22921841 - Ssna1 protein_coding processed_transcript MGP_C3HHeJ_T0052762.1 MGP_C3HHeJ_G0025168.1 mouse_genomes_project 2 22920469 22921847 - MGP_C3HHeJ_P0052762 Ssna1 protein_coding protein_coding MGP_C3HHeJ_T0052763.1 MGP_C3HHeJ_G0025168.1 mouse_genomes_project 2 22920516 22921869 - Ssna1 protein_coding processed_transcript MGP_C3HHeJ_T0052764.1 MGP_C3HHeJ_G0025168.1 mouse_genomes_project 2 22921136 22921835 - Ssna1 protein_coding processed_transcript MGP_C3HHeJ_T0099209.1 MGP_C3HHeJ_G0037403.1 mouse_genomes_project 2 119550872 119551030 - Gm25308 snRNA snRNA MGP_C3HHeJ_T0007263.1 MGP_C3HHeJ_G0005950.1 mouse_genomes_project 2 149320746 149324922 + 4933406D12Rik lincRNA lincRNA MGP_C3HHeJ_T0003842.1 MGP_C3HHeJ_G0003435.1 mouse_genomes_project 2 18918516 18945920 - Gm13327 antisense antisense MGP_C3HHeJ_T0010376.1 MGP_C3HHeJ_G0008509.1 mouse_genomes_project 2 135878160 135878247 + Mir3090 miRNA miRNA MGP_C3HHeJ_T0004095.1 MGP_C3HHeJ_G0003615.1 mouse_genomes_project 2 169702060 169704083 + Gm11465 antisense antisense MGP_C3HHeJ_T0054610.1 MGP_C3HHeJ_G0025493.1 mouse_genomes_project 2 59253877 59344846 - MGP_C3HHeJ_P0054610 Ly75 protein_coding protein_coding MGP_C3HHeJ_T0054611.1 MGP_C3HHeJ_G0025493.1 mouse_genomes_project 2 59255534 59344774 - MGP_C3HHeJ_P0054611 Ly75 protein_coding protein_coding MGP_C3HHeJ_T0057701.1 MGP_C3HHeJ_G0026305.1 mouse_genomes_project 2 147193020 147251277 - MGP_C3HHeJ_P0057701 Dzank1 protein_coding protein_coding MGP_C3HHeJ_T0057702.1 MGP_C3HHeJ_G0026305.1 mouse_genomes_project 2 147193022 147251293 - MGP_C3HHeJ_P0057702 Dzank1 protein_coding protein_coding MGP_C3HHeJ_T0057703.1 MGP_C3HHeJ_G0026305.1 mouse_genomes_project 2 147231807 147251243 - Dzank1 protein_coding retained_intron MGP_C3HHeJ_T0057704.1 MGP_C3HHeJ_G0026305.1 mouse_genomes_project 2 147245431 147250527 - Dzank1 protein_coding processed_transcript MGP_C3HHeJ_T0059120.1 MGP_C3HHeJ_G0026643.1 mouse_genomes_project 2 172212935 172214901 + MGP_C3HHeJ_P0059120 Mocs3 protein_coding protein_coding MGP_C3HHeJ_T0054849.1 MGP_C3HHeJ_G0025537.1 mouse_genomes_project 2 69139637 69145678 + MGP_C3HHeJ_P0054849 Phospho2 protein_coding protein_coding MGP_C3HHeJ_T0054850.1 MGP_C3HHeJ_G0025537.1 mouse_genomes_project 2 69139650 69147248 + MGP_C3HHeJ_P0054850 Phospho2 protein_coding protein_coding MGP_C3HHeJ_T0054851.1 MGP_C3HHeJ_G0025537.1 mouse_genomes_project 2 69139664 69147248 + MGP_C3HHeJ_P0054851 Phospho2 protein_coding protein_coding MGP_C3HHeJ_T0054852.1 MGP_C3HHeJ_G0025537.1 mouse_genomes_project 2 69139674 69142489 + Phospho2 protein_coding processed_transcript MGP_C3HHeJ_T0054853.1 MGP_C3HHeJ_G0025537.1 mouse_genomes_project 2 69139726 69151472 + Phospho2 protein_coding processed_transcript MGP_C3HHeJ_T0054854.1 MGP_C3HHeJ_G0025537.1 mouse_genomes_project 2 69140989 69147247 + MGP_C3HHeJ_P0054854 Phospho2 protein_coding protein_coding MGP_C3HHeJ_T0013393.1 MGP_C3HHeJ_G0011497.1 mouse_genomes_project 2 50256611 50257714 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054599.1 MGP_C3HHeJ_G0025491.1 mouse_genomes_project 2 59168682 59208012 + MGP_C3HHeJ_P0054599 March7 protein_coding protein_coding MGP_C3HHeJ_T0054600.1 MGP_C3HHeJ_G0025491.1 mouse_genomes_project 2 59168708 59209477 + March7 protein_coding processed_transcript MGP_C3HHeJ_T0054601.1 MGP_C3HHeJ_G0025491.1 mouse_genomes_project 2 59168868 59206774 + MGP_C3HHeJ_P0054601 March7 protein_coding protein_coding MGP_C3HHeJ_T0054602.1 MGP_C3HHeJ_G0025491.1 mouse_genomes_project 2 59183578 59206758 + MGP_C3HHeJ_P0054602 March7 protein_coding protein_coding MGP_C3HHeJ_T0054603.1 MGP_C3HHeJ_G0025491.1 mouse_genomes_project 2 59190908 59193200 + March7 protein_coding processed_transcript MGP_C3HHeJ_T0054604.1 MGP_C3HHeJ_G0025491.1 mouse_genomes_project 2 59195560 59206758 + MGP_C3HHeJ_P0054604 March7 protein_coding protein_coding MGP_C3HHeJ_T0054605.1 MGP_C3HHeJ_G0025491.1 mouse_genomes_project 2 59195694 59201941 + March7 protein_coding processed_transcript MGP_C3HHeJ_T0054606.1 MGP_C3HHeJ_G0025491.1 mouse_genomes_project 2 59201875 59206756 + March7 protein_coding processed_transcript MGP_C3HHeJ_T0054607.1 MGP_C3HHeJ_G0025491.1 mouse_genomes_project 2 59206143 59206758 + March7 protein_coding processed_transcript MGP_C3HHeJ_T0055929.1 MGP_C3HHeJ_G0025891.1 mouse_genomes_project 2 93029410 93044929 + MGP_C3HHeJ_P0055929 Chst1 protein_coding protein_coding MGP_C3HHeJ_T0010324.1 MGP_C3HHeJ_G0008457.1 mouse_genomes_project 2 36959880 36960006 - Gm27634 miRNA miRNA MGP_C3HHeJ_T0052927.1 MGP_C3HHeJ_G0025197.1 mouse_genomes_project 2 23348118 23351672 + MGP_C3HHeJ_P0052927 Lcn5 protein_coding protein_coding MGP_C3HHeJ_T0052928.1 MGP_C3HHeJ_G0025197.1 mouse_genomes_project 2 23348121 23351816 + MGP_C3HHeJ_P0052928 Lcn5 protein_coding protein_coding MGP_C3HHeJ_T0052929.1 MGP_C3HHeJ_G0025197.1 mouse_genomes_project 2 23348121 23352148 + MGP_C3HHeJ_P0052929 Lcn5 protein_coding protein_coding MGP_C3HHeJ_T0052930.1 MGP_C3HHeJ_G0025197.1 mouse_genomes_project 2 23351088 23351812 + Lcn5 protein_coding processed_transcript MGP_C3HHeJ_T0056284.1 MGP_C3HHeJ_G0025962.1 mouse_genomes_project 2 110889359 110989223 + MGP_C3HHeJ_P0056284 Lgr4 protein_coding protein_coding MGP_C3HHeJ_T0056285.1 MGP_C3HHeJ_G0025962.1 mouse_genomes_project 2 110889359 110989224 + MGP_C3HHeJ_P0056285 Lgr4 protein_coding protein_coding MGP_C3HHeJ_T0056286.1 MGP_C3HHeJ_G0025962.1 mouse_genomes_project 2 110949871 110972692 + Lgr4 protein_coding processed_transcript MGP_C3HHeJ_T0056287.1 MGP_C3HHeJ_G0025962.1 mouse_genomes_project 2 110975344 110976277 + Lgr4 protein_coding retained_intron MGP_C3HHeJ_T0010383.1 MGP_C3HHeJ_G0008516.1 mouse_genomes_project 2 155954656 155954716 + Mir5622 miRNA miRNA MGP_C3HHeJ_T0055277.1 MGP_C3HHeJ_G0025624.1 mouse_genomes_project 2 83512710 83547614 + Itgav protein_coding retained_intron MGP_C3HHeJ_T0055278.1 MGP_C3HHeJ_G0025624.1 mouse_genomes_project 2 83512710 83601099 + MGP_C3HHeJ_P0055278 Itgav protein_coding protein_coding MGP_C3HHeJ_T0055279.1 MGP_C3HHeJ_G0025624.1 mouse_genomes_project 2 83512765 83537247 + MGP_C3HHeJ_P0055279 Itgav protein_coding protein_coding MGP_C3HHeJ_T0055280.1 MGP_C3HHeJ_G0025624.1 mouse_genomes_project 2 83512770 83529606 + Itgav protein_coding processed_transcript MGP_C3HHeJ_T0055281.1 MGP_C3HHeJ_G0025624.1 mouse_genomes_project 2 83512779 83537675 + Itgav protein_coding retained_intron MGP_C3HHeJ_T0055282.1 MGP_C3HHeJ_G0025624.1 mouse_genomes_project 2 83512840 83514101 + Itgav protein_coding processed_transcript MGP_C3HHeJ_T0055283.1 MGP_C3HHeJ_G0025624.1 mouse_genomes_project 2 83512868 83601099 + MGP_C3HHeJ_P0055283 Itgav protein_coding protein_coding MGP_C3HHeJ_T0055284.1 MGP_C3HHeJ_G0025624.1 mouse_genomes_project 2 83596033 83598169 + MGP_C3HHeJ_P0055284 Itgav protein_coding protein_coding MGP_C3HHeJ_T0055285.1 MGP_C3HHeJ_G0025624.1 mouse_genomes_project 2 83597104 83601099 + MGP_C3HHeJ_P0055285 Itgav protein_coding protein_coding MGP_C3HHeJ_T0054174.1 MGP_C3HHeJ_G0025403.1 mouse_genomes_project 2 34835018 34835948 + MGP_C3HHeJ_P0054174 Olfr344 protein_coding protein_coding MGP_C3HHeJ_T0056737.1 MGP_C3HHeJ_G0026092.1 mouse_genomes_project 2 122247744 122303885 + MGP_C3HHeJ_P0056737 protein_coding protein_coding MGP_C3HHeJ_T0056738.1 MGP_C3HHeJ_G0026092.1 mouse_genomes_project 2 122247842 122343930 + MGP_C3HHeJ_P0056738 protein_coding protein_coding MGP_C3HHeJ_T0056739.1 MGP_C3HHeJ_G0026092.1 mouse_genomes_project 2 122247842 122342508 + MGP_C3HHeJ_P0056739 protein_coding unknown_likely_coding MGP_C3HHeJ_T0056740.1 MGP_C3HHeJ_G0026092.1 mouse_genomes_project 2 122307339 122343930 + MGP_C3HHeJ_P0056740 protein_coding protein_coding MGP_C3HHeJ_T0056741.1 MGP_C3HHeJ_G0026092.1 mouse_genomes_project 2 122326941 122343680 + MGP_C3HHeJ_P0056741 protein_coding protein_coding MGP_C3HHeJ_T0056742.1 MGP_C3HHeJ_G0026092.1 mouse_genomes_project 2 122330192 122359701 + MGP_C3HHeJ_P0056742 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056743.1 MGP_C3HHeJ_G0026092.1 mouse_genomes_project 2 122341561 122343728 + protein_coding retained_intron MGP_C3HHeJ_T0056744.1 MGP_C3HHeJ_G0026092.1 mouse_genomes_project 2 122343115 122357171 + protein_coding processed_transcript MGP_C3HHeJ_T0003962.1 MGP_C3HHeJ_G0003521.1 mouse_genomes_project 2 90794239 90800088 + 4933423P22Rik antisense antisense MGP_C3HHeJ_T0003963.1 MGP_C3HHeJ_G0003521.1 mouse_genomes_project 2 90794253 90803433 + 4933423P22Rik antisense antisense MGP_C3HHeJ_T0013418.1 MGP_C3HHeJ_G0011522.1 mouse_genomes_project 2 58055522 58056047 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054188.1 MGP_C3HHeJ_G0025416.1 mouse_genomes_project 2 35220027 35220975 + MGP_C3HHeJ_P0054188 Olfr356 protein_coding protein_coding MGP_C3HHeJ_T0058278.1 MGP_C3HHeJ_G0026464.1 mouse_genomes_project 2 159133000 159140300 - MGP_C3HHeJ_P0058278 Fam83c protein_coding protein_coding MGP_C3HHeJ_T0013284.1 MGP_C3HHeJ_G0011388.1 mouse_genomes_project 2 9738435 9738835 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013403.1 MGP_C3HHeJ_G0011507.1 mouse_genomes_project 2 53130461 53131936 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100435.1 MGP_C3HHeJ_G0038629.1 mouse_genomes_project 2 24385556 24385683 - Snora43 snoRNA snoRNA MGP_C3HHeJ_T0054057.1 MGP_C3HHeJ_G0025379.1 mouse_genomes_project 2 33116215 33136447 - MGP_C3HHeJ_P0054057 Phf19 protein_coding protein_coding MGP_C3HHeJ_T0054058.1 MGP_C3HHeJ_G0025379.1 mouse_genomes_project 2 33116242 33126611 - Phf19 protein_coding processed_transcript MGP_C3HHeJ_T0054059.1 MGP_C3HHeJ_G0025379.1 mouse_genomes_project 2 33120540 33127366 - Phf19 protein_coding processed_transcript MGP_C3HHeJ_T0054060.1 MGP_C3HHeJ_G0025379.1 mouse_genomes_project 2 33121427 33136497 - Phf19 protein_coding retained_intron MGP_C3HHeJ_T0054061.1 MGP_C3HHeJ_G0025379.1 mouse_genomes_project 2 33129556 33136488 - MGP_C3HHeJ_P0054061 Phf19 protein_coding protein_coding MGP_C3HHeJ_T0003979.1 MGP_C3HHeJ_G0003529.1 mouse_genomes_project 2 106509218 106510318 + Gm13954 antisense antisense MGP_C3HHeJ_T0013324.1 MGP_C3HHeJ_G0011428.1 mouse_genomes_project 2 22296689 22297335 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007314.1 MGP_C3HHeJ_G0005993.1 mouse_genomes_project 2 171637838 171678290 + A530013C23Rik lincRNA lincRNA MGP_C3HHeJ_T0007315.1 MGP_C3HHeJ_G0005993.1 mouse_genomes_project 2 171637842 171644452 + A530013C23Rik lincRNA lincRNA MGP_C3HHeJ_T0056316.1 MGP_C3HHeJ_G0025976.1 mouse_genomes_project 2 112282185 112283127 + MGP_C3HHeJ_P0056316 protein_coding protein_coding MGP_C3HHeJ_T0017632.1 MGP_C3HHeJ_G0015226.1 mouse_genomes_project 2 124539104 124555595 + 4930417H01Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017633.1 MGP_C3HHeJ_G0015226.1 mouse_genomes_project 2 124539964 124558071 + 4930417H01Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017634.1 MGP_C3HHeJ_G0015226.1 mouse_genomes_project 2 124539966 124555595 + 4930417H01Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017635.1 MGP_C3HHeJ_G0015226.1 mouse_genomes_project 2 124541971 124558072 + 4930417H01Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017636.1 MGP_C3HHeJ_G0015226.1 mouse_genomes_project 2 124541973 124555706 + 4930417H01Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017637.1 MGP_C3HHeJ_G0015226.1 mouse_genomes_project 2 124545778 124558931 + 4930417H01Rik processed_transcript processed_transcript MGP_C3HHeJ_T0052707.1 MGP_C3HHeJ_G0025155.1 mouse_genomes_project 2 22829312 22831894 + MGP_C3HHeJ_P0052707 Nrarp protein_coding protein_coding MGP_C3HHeJ_T0057143.1 MGP_C3HHeJ_G0026174.1 mouse_genomes_project 2 129349811 129364376 + Stard7 protein_coding processed_transcript MGP_C3HHeJ_T0057144.1 MGP_C3HHeJ_G0026174.1 mouse_genomes_project 2 129350175 129378768 + MGP_C3HHeJ_P0057144 Stard7 protein_coding protein_coding MGP_C3HHeJ_T0057145.1 MGP_C3HHeJ_G0026174.1 mouse_genomes_project 2 129350297 129378761 + MGP_C3HHeJ_P0057145 Stard7 protein_coding protein_coding MGP_C3HHeJ_T0057146.1 MGP_C3HHeJ_G0026174.1 mouse_genomes_project 2 129364025 129375648 + Stard7 protein_coding retained_intron MGP_C3HHeJ_T0057147.1 MGP_C3HHeJ_G0026174.1 mouse_genomes_project 2 129369840 129377137 + Stard7 protein_coding retained_intron MGP_C3HHeJ_T0057148.1 MGP_C3HHeJ_G0026174.1 mouse_genomes_project 2 129371834 129377162 + Stard7 protein_coding processed_transcript MGP_C3HHeJ_T0057149.1 MGP_C3HHeJ_G0026174.1 mouse_genomes_project 2 129371836 129377191 + Stard7 protein_coding processed_transcript MGP_C3HHeJ_T0004020.1 MGP_C3HHeJ_G0003560.1 mouse_genomes_project 2 134503925 134511882 + AV099323 antisense antisense MGP_C3HHeJ_T0053472.1 MGP_C3HHeJ_G0025294.1 mouse_genomes_project 2 28180412 28208023 + MGP_C3HHeJ_P0053472 Gm28035 protein_coding protein_coding MGP_C3HHeJ_T0053473.1 MGP_C3HHeJ_G0025294.1 mouse_genomes_project 2 28180419 28208028 + MGP_C3HHeJ_P0053473 Gm28035 protein_coding protein_coding MGP_C3HHeJ_T0017523.1 MGP_C3HHeJ_G0015163.1 mouse_genomes_project 2 23471604 23482980 - Gm13538 processed_transcript processed_transcript MGP_C3HHeJ_T0053098.1 MGP_C3HHeJ_G0025229.1 mouse_genomes_project 2 24420858 24424467 - MGP_C3HHeJ_P0053098 Lcn4 protein_coding protein_coding MGP_C3HHeJ_T0052529.1 MGP_C3HHeJ_G0025125.1 mouse_genomes_project 2 20120494 20193604 + MGP_C3HHeJ_P0052529 Gad2 protein_coding protein_coding MGP_C3HHeJ_T0052530.1 MGP_C3HHeJ_G0025125.1 mouse_genomes_project 2 20121593 20128291 + Gad2 protein_coding processed_transcript MGP_C3HHeJ_T0017671.1 MGP_C3HHeJ_G0015245.1 mouse_genomes_project 2 160193380 160212094 - 5430405H02Rik processed_transcript antisense MGP_C3HHeJ_T0017672.1 MGP_C3HHeJ_G0015245.1 mouse_genomes_project 2 160201459 160212025 - 5430405H02Rik processed_transcript antisense MGP_C3HHeJ_T0017673.1 MGP_C3HHeJ_G0015245.1 mouse_genomes_project 2 160201459 160212076 - 5430405H02Rik processed_transcript antisense MGP_C3HHeJ_T0056926.1 MGP_C3HHeJ_G0026121.1 mouse_genomes_project 2 123648900 123721838 + MGP_C3HHeJ_P0056926 Ctdspl2 protein_coding protein_coding MGP_C3HHeJ_T0056927.1 MGP_C3HHeJ_G0026121.1 mouse_genomes_project 2 123649315 123720587 + MGP_C3HHeJ_P0056927 Ctdspl2 protein_coding protein_coding MGP_C3HHeJ_T0056928.1 MGP_C3HHeJ_G0026121.1 mouse_genomes_project 2 123649364 123702586 + Ctdspl2 protein_coding retained_intron MGP_C3HHeJ_T0056929.1 MGP_C3HHeJ_G0026121.1 mouse_genomes_project 2 123649384 123720811 + Ctdspl2 protein_coding processed_transcript MGP_C3HHeJ_T0056930.1 MGP_C3HHeJ_G0026121.1 mouse_genomes_project 2 123649390 123702183 + Ctdspl2 protein_coding processed_transcript MGP_C3HHeJ_T0056931.1 MGP_C3HHeJ_G0026121.1 mouse_genomes_project 2 123649390 123698774 + Ctdspl2 protein_coding retained_intron MGP_C3HHeJ_T0056932.1 MGP_C3HHeJ_G0026121.1 mouse_genomes_project 2 123649563 123718926 + MGP_C3HHeJ_P0056932 Ctdspl2 protein_coding protein_coding MGP_C3HHeJ_T0056933.1 MGP_C3HHeJ_G0026121.1 mouse_genomes_project 2 123661691 123721787 + MGP_C3HHeJ_P0056933 Ctdspl2 protein_coding protein_coding MGP_C3HHeJ_T0056934.1 MGP_C3HHeJ_G0026121.1 mouse_genomes_project 2 123671026 123712197 + Ctdspl2 protein_coding retained_intron MGP_C3HHeJ_T0056957.1 MGP_C3HHeJ_G0026132.1 mouse_genomes_project 2 124040595 124074925 + MGP_C3HHeJ_P0056957 Duox1 protein_coding protein_coding MGP_C3HHeJ_T0098247.1 MGP_C3HHeJ_G0036459.1 mouse_genomes_project 2 107972933 107973203 - Gm24885 ribozyme ribozyme MGP_C3HHeJ_T0013484.1 MGP_C3HHeJ_G0011588.1 mouse_genomes_project 2 82328561 82329090 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007066.1 MGP_C3HHeJ_G0005792.1 mouse_genomes_project 2 17200225 17210793 - Gm13346 lincRNA lincRNA MGP_C3HHeJ_T0057657.1 MGP_C3HHeJ_G0026293.1 mouse_genomes_project 2 145737784 145747586 + MGP_C3HHeJ_P0057657 Snrpb2 protein_coding protein_coding MGP_C3HHeJ_T0057658.1 MGP_C3HHeJ_G0026293.1 mouse_genomes_project 2 145737806 145740480 + Snrpb2 protein_coding retained_intron MGP_C3HHeJ_T0057659.1 MGP_C3HHeJ_G0026293.1 mouse_genomes_project 2 145737876 145744157 + MGP_C3HHeJ_P0057659 Snrpb2 protein_coding protein_coding MGP_C3HHeJ_T0057660.1 MGP_C3HHeJ_G0026293.1 mouse_genomes_project 2 145739147 145744157 + Snrpb2 protein_coding retained_intron MGP_C3HHeJ_T0057661.1 MGP_C3HHeJ_G0026293.1 mouse_genomes_project 2 145742918 145747586 + Snrpb2 protein_coding retained_intron MGP_C3HHeJ_T0053744.1 MGP_C3HHeJ_G0025334.1 mouse_genomes_project 2 30334232 30335929 - Uck1 protein_coding retained_intron MGP_C3HHeJ_T0053745.1 MGP_C3HHeJ_G0025334.1 mouse_genomes_project 2 30335109 30339276 - MGP_C3HHeJ_P0053745 Uck1 protein_coding protein_coding MGP_C3HHeJ_T0053746.1 MGP_C3HHeJ_G0025334.1 mouse_genomes_project 2 30335528 30338904 - MGP_C3HHeJ_P0053746 Uck1 protein_coding protein_coding MGP_C3HHeJ_T0053747.1 MGP_C3HHeJ_G0025334.1 mouse_genomes_project 2 30337106 30338893 - Uck1 protein_coding retained_intron MGP_C3HHeJ_T0053748.1 MGP_C3HHeJ_G0025334.1 mouse_genomes_project 2 30337355 30339321 - Uck1 protein_coding retained_intron MGP_C3HHeJ_T0010341.1 MGP_C3HHeJ_G0008474.1 mouse_genomes_project 2 76687737 76687819 - Gm44360 miRNA miRNA MGP_C3HHeJ_T0055486.1 MGP_C3HHeJ_G0025734.1 mouse_genomes_project 2 87478992 87479964 + MGP_C3HHeJ_P0055486 Olfr1123 protein_coding protein_coding MGP_C3HHeJ_T0004105.1 MGP_C3HHeJ_G0003625.1 mouse_genomes_project 2 176533192 176548412 + Gm14273 antisense antisense MGP_C3HHeJ_T0101892.1 MGP_C3HHeJ_G0039857.1 mouse_genomes_project 2 85445837 85446563 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0055511.1 MGP_C3HHeJ_G0025750.1 mouse_genomes_project 2 87793488 87794421 - MGP_C3HHeJ_P0055511 Olfr1137 protein_coding protein_coding MGP_C3HHeJ_T0053984.1 MGP_C3HHeJ_G0025369.1 mouse_genomes_project 2 31706989 31788950 - MGP_C3HHeJ_P0053984 Lmx1b protein_coding protein_coding MGP_C3HHeJ_T0053985.1 MGP_C3HHeJ_G0025369.1 mouse_genomes_project 2 31710346 31788937 - MGP_C3HHeJ_P0053985 Lmx1b protein_coding protein_coding MGP_C3HHeJ_T0053986.1 MGP_C3HHeJ_G0025369.1 mouse_genomes_project 2 31713177 31779889 - Lmx1b protein_coding processed_transcript MGP_C3HHeJ_T0098105.1 MGP_C3HHeJ_G0036317.1 mouse_genomes_project 2 93849138 93849241 - Gm23380 rRNA rRNA MGP_C3HHeJ_T0055720.1 MGP_C3HHeJ_G0025862.1 mouse_genomes_project 2 91420442 91454569 + MGP_C3HHeJ_P0055720 Spi1 protein_coding protein_coding MGP_C3HHeJ_T0055721.1 MGP_C3HHeJ_G0025862.1 mouse_genomes_project 2 91420460 91430637 + Spi1 protein_coding processed_transcript MGP_C3HHeJ_T0055722.1 MGP_C3HHeJ_G0025862.1 mouse_genomes_project 2 91436422 91455959 + MGP_C3HHeJ_P0055722 Spi1 protein_coding protein_coding MGP_C3HHeJ_T0055723.1 MGP_C3HHeJ_G0025862.1 mouse_genomes_project 2 91437106 91453518 + MGP_C3HHeJ_P0055723 Spi1 protein_coding protein_coding MGP_C3HHeJ_T0100474.1 MGP_C3HHeJ_G0038668.1 mouse_genomes_project 2 105349679 105349815 + Gm22439 snoRNA snoRNA MGP_C3HHeJ_T0013622.1 MGP_C3HHeJ_G0011726.1 mouse_genomes_project 2 135264553 135265555 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057627.1 MGP_C3HHeJ_G0026287.1 mouse_genomes_project 2 142720913 142722439 + MGP_C3HHeJ_P0057627 Gm17374 protein_coding protein_coding MGP_C3HHeJ_T0100442.1 MGP_C3HHeJ_G0038636.1 mouse_genomes_project 2 30303946 30304031 + Gm25632 snoRNA snoRNA MGP_C3HHeJ_T0013551.1 MGP_C3HHeJ_G0011655.1 mouse_genomes_project 2 104614489 104614750 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100503.1 MGP_C3HHeJ_G0038697.1 mouse_genomes_project 2 161824875 161825006 - Gm24411 snoRNA snoRNA MGP_C3HHeJ_T0004012.1 MGP_C3HHeJ_G0003554.1 mouse_genomes_project 2 131507260 131513111 + Il1bos antisense antisense MGP_C3HHeJ_T0004013.1 MGP_C3HHeJ_G0003554.1 mouse_genomes_project 2 131507265 131513096 + Il1bos antisense antisense MGP_C3HHeJ_T0004014.1 MGP_C3HHeJ_G0003554.1 mouse_genomes_project 2 131510491 131512440 + Il1bos antisense antisense MGP_C3HHeJ_T0057954.1 MGP_C3HHeJ_G0026374.1 mouse_genomes_project 2 155399313 155405862 - MGP_C3HHeJ_P0057954 Trib3 protein_coding protein_coding MGP_C3HHeJ_T0057955.1 MGP_C3HHeJ_G0026374.1 mouse_genomes_project 2 155401639 155405818 - Trib3 protein_coding processed_transcript MGP_C3HHeJ_T0057956.1 MGP_C3HHeJ_G0026374.1 mouse_genomes_project 2 155404793 155405800 - Trib3 protein_coding retained_intron MGP_C3HHeJ_T0057970.1 MGP_C3HHeJ_G0026385.1 mouse_genomes_project 2 155643519 155643720 + MGP_C3HHeJ_P0057970 Gm17416 protein_coding protein_coding MGP_C3HHeJ_T0059178.1 MGP_C3HHeJ_G0026656.1 mouse_genomes_project 2 174862497 175018302 + MGP_C3HHeJ_P0059178 Dok5 protein_coding protein_coding MGP_C3HHeJ_T0013276.1 MGP_C3HHeJ_G0011380.1 mouse_genomes_project 2 6423446 6423876 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001010.1 MGP_C3HHeJ_G0000947.1 mouse_genomes_project 2 10489775 10491639 - TEC TEC MGP_C3HHeJ_T0055463.1 MGP_C3HHeJ_G0025712.1 mouse_genomes_project 2 86812094 86813087 + MGP_C3HHeJ_P0055463 Olfr1094 protein_coding protein_coding MGP_C3HHeJ_T0052449.1 MGP_C3HHeJ_G0025109.1 mouse_genomes_project 2 16177857 16183374 + Bmi1 protein_coding processed_transcript MGP_C3HHeJ_T0052450.1 MGP_C3HHeJ_G0025109.1 mouse_genomes_project 2 16177909 16185490 + MGP_C3HHeJ_P0052450 Bmi1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0052451.1 MGP_C3HHeJ_G0025109.1 mouse_genomes_project 2 16178783 16184685 + MGP_C3HHeJ_P0052451 Bmi1 protein_coding protein_coding MGP_C3HHeJ_T0052452.1 MGP_C3HHeJ_G0025109.1 mouse_genomes_project 2 16181346 16185022 + MGP_C3HHeJ_P0052452 Bmi1 protein_coding protein_coding MGP_C3HHeJ_T0052453.1 MGP_C3HHeJ_G0025109.1 mouse_genomes_project 2 16182002 16184039 + MGP_C3HHeJ_P0052453 Bmi1 protein_coding protein_coding MGP_C3HHeJ_T0052454.1 MGP_C3HHeJ_G0025109.1 mouse_genomes_project 2 16182115 16183865 + MGP_C3HHeJ_P0052454 Bmi1 protein_coding protein_coding MGP_C3HHeJ_T0010306.1 MGP_C3HHeJ_G0008439.1 mouse_genomes_project 2 27751173 27751270 - Mir219a-2 miRNA miRNA MGP_C3HHeJ_T0017701.1 MGP_C3HHeJ_G0015258.1 mouse_genomes_project 2 177287649 177288102 - Gm20490 processed_transcript processed_transcript MGP_C3HHeJ_T0007068.1 MGP_C3HHeJ_G0005794.1 mouse_genomes_project 2 20263675 20271022 + 1700092C17Rik lincRNA lincRNA MGP_C3HHeJ_T0007069.1 MGP_C3HHeJ_G0005794.1 mouse_genomes_project 2 20270720 20270990 + 1700092C17Rik lincRNA lincRNA MGP_C3HHeJ_T0056905.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123215504 123447057 - MGP_C3HHeJ_P0056905 Frmd5 protein_coding protein_coding MGP_C3HHeJ_T0056906.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123215504 123256331 - MGP_C3HHeJ_P0056906 Frmd5 protein_coding protein_coding MGP_C3HHeJ_T0056907.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123215504 123501184 - MGP_C3HHeJ_P0056907 Frmd5 protein_coding protein_coding MGP_C3HHeJ_T0056908.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123217713 123225638 - MGP_C3HHeJ_P0056908 Frmd5 protein_coding protein_coding MGP_C3HHeJ_T0056909.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123218271 123447057 - MGP_C3HHeJ_P0056909 Frmd5 protein_coding protein_coding MGP_C3HHeJ_T0056910.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123218273 123501120 - MGP_C3HHeJ_P0056910 Frmd5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056911.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123218274 123501089 - MGP_C3HHeJ_P0056911 Frmd5 protein_coding protein_coding MGP_C3HHeJ_T0056912.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123218622 123500928 - MGP_C3HHeJ_P0056912 Frmd5 protein_coding protein_coding MGP_C3HHeJ_T0056913.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123219015 123228682 - Frmd5 protein_coding processed_transcript MGP_C3HHeJ_T0056914.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123231306 123501154 - Frmd5 protein_coding retained_intron MGP_C3HHeJ_T0056915.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123238839 123500969 - MGP_C3HHeJ_P0056915 Frmd5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056916.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123238891 123253903 - Frmd5 protein_coding processed_transcript MGP_C3HHeJ_T0058956.1 MGP_C3HHeJ_G0026612.1 mouse_genomes_project 2 169197690 169268993 - MGP_C3HHeJ_P0058956 Slc13a3 protein_coding protein_coding MGP_C3HHeJ_T0058957.1 MGP_C3HHeJ_G0026612.1 mouse_genomes_project 2 169197957 169268993 - MGP_C3HHeJ_P0058957 Slc13a3 protein_coding protein_coding MGP_C3HHeJ_T0058958.1 MGP_C3HHeJ_G0026612.1 mouse_genomes_project 2 169199367 169201718 - Slc13a3 protein_coding retained_intron MGP_C3HHeJ_T0058959.1 MGP_C3HHeJ_G0026612.1 mouse_genomes_project 2 169204535 169212933 - Slc13a3 protein_coding retained_intron MGP_C3HHeJ_T0058960.1 MGP_C3HHeJ_G0026612.1 mouse_genomes_project 2 169238866 169268962 - Slc13a3 protein_coding retained_intron MGP_C3HHeJ_T0057691.1 MGP_C3HHeJ_G0026304.1 mouse_genomes_project 2 147086989 147091715 + MGP_C3HHeJ_P0057691 Pet117 protein_coding protein_coding MGP_C3HHeJ_T0013413.1 MGP_C3HHeJ_G0011517.1 mouse_genomes_project 2 56560243 56560420 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100478.1 MGP_C3HHeJ_G0038672.1 mouse_genomes_project 2 113728121 113728250 + Gm22676 snoRNA snoRNA MGP_C3HHeJ_T0055796.1 MGP_C3HHeJ_G0025870.1 mouse_genomes_project 2 91621887 91805969 - MGP_C3HHeJ_P0055796 1110051M20Rik protein_coding protein_coding MGP_C3HHeJ_T0055797.1 MGP_C3HHeJ_G0025870.1 mouse_genomes_project 2 91625721 91805961 - MGP_C3HHeJ_P0055797 1110051M20Rik protein_coding protein_coding MGP_C3HHeJ_T0055798.1 MGP_C3HHeJ_G0025870.1 mouse_genomes_project 2 91630351 91631751 - 1110051M20Rik protein_coding processed_transcript MGP_C3HHeJ_T0055799.1 MGP_C3HHeJ_G0025870.1 mouse_genomes_project 2 91654524 91805990 - 1110051M20Rik protein_coding processed_transcript MGP_C3HHeJ_T0055800.1 MGP_C3HHeJ_G0025870.1 mouse_genomes_project 2 91744325 91806016 - 1110051M20Rik protein_coding processed_transcript MGP_C3HHeJ_T0055801.1 MGP_C3HHeJ_G0025870.1 mouse_genomes_project 2 91780138 91805984 - 1110051M20Rik protein_coding processed_transcript MGP_C3HHeJ_T0055802.1 MGP_C3HHeJ_G0025870.1 mouse_genomes_project 2 91780187 91806051 - 1110051M20Rik protein_coding processed_transcript MGP_C3HHeJ_T0055089.1 MGP_C3HHeJ_G0025585.1 mouse_genomes_project 2 74249278 74274461 + MGP_C3HHeJ_P0055089 Gm28230 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057325.1 MGP_C3HHeJ_G0026223.1 mouse_genomes_project 2 132591422 132598424 - Pced1a protein_coding processed_transcript MGP_C3HHeJ_T0057326.1 MGP_C3HHeJ_G0026223.1 mouse_genomes_project 2 132591857 132598454 - MGP_C3HHeJ_P0057326 Pced1a protein_coding protein_coding MGP_C3HHeJ_T0057327.1 MGP_C3HHeJ_G0026223.1 mouse_genomes_project 2 132592380 132598457 - Pced1a protein_coding processed_transcript MGP_C3HHeJ_T0057328.1 MGP_C3HHeJ_G0026223.1 mouse_genomes_project 2 132592404 132598442 - Pced1a protein_coding retained_intron MGP_C3HHeJ_T0057329.1 MGP_C3HHeJ_G0026223.1 mouse_genomes_project 2 132593133 132598863 - MGP_C3HHeJ_P0057329 Pced1a protein_coding protein_coding MGP_C3HHeJ_T0057330.1 MGP_C3HHeJ_G0026223.1 mouse_genomes_project 2 132593144 132598877 - Pced1a protein_coding retained_intron MGP_C3HHeJ_T0057331.1 MGP_C3HHeJ_G0026223.1 mouse_genomes_project 2 132596064 132598486 - Pced1a protein_coding retained_intron MGP_C3HHeJ_T0054177.1 MGP_C3HHeJ_G0025406.1 mouse_genomes_project 2 35008308 35009247 + MGP_C3HHeJ_P0054177 Olfr347 protein_coding protein_coding MGP_C3HHeJ_T0054335.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43070350 43266133 - MGP_C3HHeJ_P0054335 Gtdc1 protein_coding protein_coding MGP_C3HHeJ_T0054336.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43070352 43370561 - MGP_C3HHeJ_P0054336 Gtdc1 protein_coding protein_coding MGP_C3HHeJ_T0054337.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43071068 43077294 - Gtdc1 protein_coding processed_transcript MGP_C3HHeJ_T0054338.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43076316 43077661 - Gtdc1 protein_coding processed_transcript MGP_C3HHeJ_T0054339.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43081426 43436872 - MGP_C3HHeJ_P0054339 Gtdc1 protein_coding protein_coding MGP_C3HHeJ_T0054340.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43138091 43436975 - Gtdc1 protein_coding processed_transcript MGP_C3HHeJ_T0054341.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43140226 43437368 - MGP_C3HHeJ_P0054341 Gtdc1 protein_coding protein_coding MGP_C3HHeJ_T0054342.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43261590 43334831 - Gtdc1 protein_coding processed_transcript MGP_C3HHeJ_T0054343.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43293197 43436947 - MGP_C3HHeJ_P0054343 Gtdc1 protein_coding protein_coding MGP_C3HHeJ_T0054344.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43300261 43436945 - Gtdc1 protein_coding processed_transcript MGP_C3HHeJ_T0054345.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43302726 43436860 - Gtdc1 protein_coding processed_transcript MGP_C3HHeJ_T0057349.1 MGP_C3HHeJ_G0026230.1 mouse_genomes_project 2 132794551 132814194 - MGP_C3HHeJ_P0057349 Fastkd5 protein_coding protein_coding MGP_C3HHeJ_T0057350.1 MGP_C3HHeJ_G0026230.1 mouse_genomes_project 2 132794956 132797380 - MGP_C3HHeJ_P0057350 Fastkd5 protein_coding protein_coding MGP_C3HHeJ_T0055568.1 MGP_C3HHeJ_G0025802.1 mouse_genomes_project 2 89129751 89130687 - MGP_C3HHeJ_P0055568 Olfr1214 protein_coding protein_coding MGP_C3HHeJ_T0056492.1 MGP_C3HHeJ_G0026043.1 mouse_genomes_project 2 120281834 120318547 + MGP_C3HHeJ_P0056492 Disp2 protein_coding protein_coding MGP_C3HHeJ_T0056493.1 MGP_C3HHeJ_G0026043.1 mouse_genomes_project 2 120281837 120300235 + MGP_C3HHeJ_P0056493 Disp2 protein_coding protein_coding MGP_C3HHeJ_T0056494.1 MGP_C3HHeJ_G0026043.1 mouse_genomes_project 2 120281854 120318666 + MGP_C3HHeJ_P0056494 Disp2 protein_coding protein_coding MGP_C3HHeJ_T0056495.1 MGP_C3HHeJ_G0026043.1 mouse_genomes_project 2 120281857 120295106 + MGP_C3HHeJ_P0056495 Disp2 protein_coding protein_coding MGP_C3HHeJ_T0056496.1 MGP_C3HHeJ_G0026043.1 mouse_genomes_project 2 120281874 120295105 + Disp2 protein_coding retained_intron MGP_C3HHeJ_T0057631.1 MGP_C3HHeJ_G0026288.1 mouse_genomes_project 2 142742197 142775929 + MGP_C3HHeJ_P0057631 Ndufaf5 protein_coding protein_coding MGP_C3HHeJ_T0057632.1 MGP_C3HHeJ_G0026288.1 mouse_genomes_project 2 142742261 142743863 + Ndufaf5 protein_coding retained_intron MGP_C3HHeJ_T0057633.1 MGP_C3HHeJ_G0026288.1 mouse_genomes_project 2 142742578 142775872 + Ndufaf5 protein_coding processed_transcript MGP_C3HHeJ_T0003934.1 MGP_C3HHeJ_G0003503.1 mouse_genomes_project 2 72466700 72476375 + Sp3os antisense antisense MGP_C3HHeJ_T0003935.1 MGP_C3HHeJ_G0003503.1 mouse_genomes_project 2 72466700 72476140 + Sp3os antisense antisense MGP_C3HHeJ_T0003936.1 MGP_C3HHeJ_G0003503.1 mouse_genomes_project 2 72466792 72476244 + Sp3os antisense antisense MGP_C3HHeJ_T0003937.1 MGP_C3HHeJ_G0003503.1 mouse_genomes_project 2 72474938 72476305 + Sp3os antisense antisense MGP_C3HHeJ_T0059478.1 MGP_C3HHeJ_G0026733.1 mouse_genomes_project 2 185855658 185894689 - MGP_C3HHeJ_P0059478 Gmeb2 protein_coding protein_coding MGP_C3HHeJ_T0059479.1 MGP_C3HHeJ_G0026733.1 mouse_genomes_project 2 185857994 185883619 - MGP_C3HHeJ_P0059479 Gmeb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059480.1 MGP_C3HHeJ_G0026733.1 mouse_genomes_project 2 185858978 185860335 - Gmeb2 protein_coding retained_intron MGP_C3HHeJ_T0059481.1 MGP_C3HHeJ_G0026733.1 mouse_genomes_project 2 185860121 185893813 - MGP_C3HHeJ_P0059481 Gmeb2 protein_coding protein_coding MGP_C3HHeJ_T0059482.1 MGP_C3HHeJ_G0026733.1 mouse_genomes_project 2 185860141 185894427 - MGP_C3HHeJ_P0059482 Gmeb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059483.1 MGP_C3HHeJ_G0026733.1 mouse_genomes_project 2 185869781 185894685 - Gmeb2 protein_coding retained_intron MGP_C3HHeJ_T0056402.1 MGP_C3HHeJ_G0026022.1 mouse_genomes_project 2 115458991 115467014 - MGP_C3HHeJ_P0056402 Zfp770 protein_coding protein_coding MGP_C3HHeJ_T0056403.1 MGP_C3HHeJ_G0026022.1 mouse_genomes_project 2 115464104 115466985 - Zfp770 protein_coding processed_transcript MGP_C3HHeJ_T0003916.1 MGP_C3HHeJ_G0003490.1 mouse_genomes_project 2 65125987 65136134 - Gm13617 antisense antisense MGP_C3HHeJ_T0010386.1 MGP_C3HHeJ_G0008519.1 mouse_genomes_project 2 159734880 159734972 - Gm22759 miRNA miRNA MGP_C3HHeJ_T0001031.1 MGP_C3HHeJ_G0000968.1 mouse_genomes_project 2 31761301 31761580 + TEC TEC MGP_C3HHeJ_T0053927.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31046280 31082540 - MGP_C3HHeJ_P0053927 Lrsam1 protein_coding protein_coding MGP_C3HHeJ_T0053928.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31046284 31082899 - MGP_C3HHeJ_P0053928 Lrsam1 protein_coding protein_coding MGP_C3HHeJ_T0053929.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31050035 31062274 - MGP_C3HHeJ_P0053929 Lrsam1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053930.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31056289 31059244 - Lrsam1 protein_coding retained_intron MGP_C3HHeJ_T0053931.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31075505 31082884 - MGP_C3HHeJ_P0053931 Lrsam1 protein_coding protein_coding MGP_C3HHeJ_T0053932.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31075507 31082877 - MGP_C3HHeJ_P0053932 Lrsam1 protein_coding protein_coding MGP_C3HHeJ_T0053933.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31075520 31081191 - MGP_C3HHeJ_P0053933 Lrsam1 protein_coding protein_coding MGP_C3HHeJ_T0053934.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31075524 31082536 - MGP_C3HHeJ_P0053934 Lrsam1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053935.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31078533 31082878 - MGP_C3HHeJ_P0053935 Lrsam1 protein_coding protein_coding MGP_C3HHeJ_T0053936.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31078540 31082878 - MGP_C3HHeJ_P0053936 Lrsam1 protein_coding protein_coding MGP_C3HHeJ_T0053937.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31081531 31082885 - Lrsam1 protein_coding processed_transcript MGP_C3HHeJ_T0053938.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31082358 31082891 - Lrsam1 protein_coding processed_transcript MGP_C3HHeJ_T0013302.1 MGP_C3HHeJ_G0011406.1 mouse_genomes_project 2 16060007 16060080 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059396.1 MGP_C3HHeJ_G0026717.1 mouse_genomes_project 2 185287404 185295948 + MGP_C3HHeJ_P0059396 Gid8 protein_coding protein_coding MGP_C3HHeJ_T0059397.1 MGP_C3HHeJ_G0026717.1 mouse_genomes_project 2 185288974 185292027 + Gid8 protein_coding processed_transcript MGP_C3HHeJ_T0059398.1 MGP_C3HHeJ_G0026717.1 mouse_genomes_project 2 185289833 185295945 + MGP_C3HHeJ_P0059398 Gid8 protein_coding protein_coding MGP_C3HHeJ_T0055258.1 MGP_C3HHeJ_G0025619.1 mouse_genomes_project 2 80358795 80401969 + Gm4353 protein_coding retained_intron MGP_C3HHeJ_T0055260.1 MGP_C3HHeJ_G0025619.1 mouse_genomes_project 2 80382010 80401965 + MGP_C3HHeJ_P0055260 Gm4353 protein_coding protein_coding MGP_C3HHeJ_T0055262.1 MGP_C3HHeJ_G0025619.1 mouse_genomes_project 2 80382026 80399068 + MGP_C3HHeJ_P0055262 Gm4353 protein_coding protein_coding MGP_C3HHeJ_T0055263.1 MGP_C3HHeJ_G0025619.1 mouse_genomes_project 2 80382462 80389681 + Gm4353 protein_coding processed_transcript MGP_C3HHeJ_T0055264.1 MGP_C3HHeJ_G0025619.1 mouse_genomes_project 2 80387419 80396482 + Gm4353 protein_coding processed_transcript MGP_C3HHeJ_T0055469.1 MGP_C3HHeJ_G0025717.1 mouse_genomes_project 2 86969268 86970198 - MGP_C3HHeJ_P0055469 Olfr1101 protein_coding protein_coding MGP_C3HHeJ_T0058382.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159464570 159498735 - MGP_C3HHeJ_P0058382 Rbm39 protein_coding protein_coding MGP_C3HHeJ_T0058383.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159464577 159498077 - MGP_C3HHeJ_P0058383 Rbm39 protein_coding protein_coding MGP_C3HHeJ_T0058384.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159464580 159498664 - MGP_C3HHeJ_P0058384 Rbm39 protein_coding protein_coding MGP_C3HHeJ_T0058385.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159464580 159498646 - MGP_C3HHeJ_P0058385 Rbm39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058386.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159465271 159498681 - MGP_C3HHeJ_P0058386 Rbm39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058387.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159465271 159498673 - MGP_C3HHeJ_P0058387 Rbm39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058388.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159466566 159482202 - MGP_C3HHeJ_P0058388 Rbm39 protein_coding protein_coding MGP_C3HHeJ_T0058389.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159479037 159498639 - MGP_C3HHeJ_P0058389 Rbm39 protein_coding protein_coding MGP_C3HHeJ_T0058390.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159479039 159482491 - Rbm39 protein_coding retained_intron MGP_C3HHeJ_T0058391.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159480021 159488135 - Rbm39 protein_coding processed_transcript MGP_C3HHeJ_T0058392.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159481192 159487046 - Rbm39 protein_coding retained_intron MGP_C3HHeJ_T0058393.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159482084 159498656 - MGP_C3HHeJ_P0058393 Rbm39 protein_coding protein_coding MGP_C3HHeJ_T0058394.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159482198 159491447 - Rbm39 protein_coding processed_transcript MGP_C3HHeJ_T0058395.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159486436 159496228 - Rbm39 protein_coding retained_intron MGP_C3HHeJ_T0058396.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159488731 159495877 - Rbm39 protein_coding processed_transcript MGP_C3HHeJ_T0058397.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159491318 159498658 - MGP_C3HHeJ_P0058397 Rbm39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058398.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159491417 159498644 - MGP_C3HHeJ_P0058398 Rbm39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058399.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159491439 159496398 - Rbm39 protein_coding retained_intron MGP_C3HHeJ_T0058400.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159493180 159498409 - MGP_C3HHeJ_P0058400 Rbm39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058401.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159493184 159498653 - MGP_C3HHeJ_P0058401 Rbm39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058402.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159493269 159498735 - MGP_C3HHeJ_P0058402 Rbm39 protein_coding protein_coding MGP_C3HHeJ_T0058403.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159495654 159498693 - Rbm39 protein_coding retained_intron MGP_C3HHeJ_T0058404.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159495854 159498646 - MGP_C3HHeJ_P0058404 Rbm39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058405.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159497055 159498709 - Rbm39 protein_coding retained_intron MGP_C3HHeJ_T0058406.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159497057 159498642 - Rbm39 protein_coding retained_intron MGP_C3HHeJ_T0013326.1 MGP_C3HHeJ_G0011430.1 mouse_genomes_project 2 23239591 23239832 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052926.1 MGP_C3HHeJ_G0025196.1 mouse_genomes_project 2 23343296 23346394 + MGP_C3HHeJ_P0052926 Lcn8 protein_coding protein_coding MGP_C3HHeJ_T0001071.1 MGP_C3HHeJ_G0001007.1 mouse_genomes_project 2 174055033 174056206 - TEC TEC MGP_C3HHeJ_T0001072.1 MGP_C3HHeJ_G0001007.1 mouse_genomes_project 2 174055146 174056006 - TEC TEC MGP_C3HHeJ_T0052245.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8932501 8993893 + MGP_C3HHeJ_P0052245 protein_coding protein_coding MGP_C3HHeJ_T0052247.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8963670 8994269 + protein_coding processed_transcript MGP_C3HHeJ_T0052248.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8963716 8979215 + protein_coding retained_intron MGP_C3HHeJ_T0052249.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8963728 8994612 + protein_coding processed_transcript MGP_C3HHeJ_T0052250.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8963784 8994626 + MGP_C3HHeJ_P0052250 protein_coding protein_coding MGP_C3HHeJ_T0052251.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8963893 8994045 + protein_coding processed_transcript MGP_C3HHeJ_T0052252.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8964053 8980754 + MGP_C3HHeJ_P0052252 protein_coding protein_coding MGP_C3HHeJ_T0052253.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8964100 8981041 + protein_coding retained_intron MGP_C3HHeJ_T0052254.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8964118 8994630 + MGP_C3HHeJ_P0052254 protein_coding protein_coding MGP_C3HHeJ_T0052255.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8964151 8994961 + MGP_C3HHeJ_P0052255 protein_coding protein_coding MGP_C3HHeJ_T0052256.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8964151 8994045 + MGP_C3HHeJ_P0052256 protein_coding protein_coding MGP_C3HHeJ_T0052257.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8964152 8994045 + MGP_C3HHeJ_P0052257 protein_coding protein_coding MGP_C3HHeJ_T0052258.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8964189 8993893 + MGP_C3HHeJ_P0052258 protein_coding protein_coding MGP_C3HHeJ_T0052259.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8978975 8980935 + protein_coding retained_intron MGP_C3HHeJ_T0052260.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8979079 8994061 + MGP_C3HHeJ_P0052260 protein_coding protein_coding MGP_C3HHeJ_T0052261.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8983812 8994612 + protein_coding retained_intron MGP_C3HHeJ_T0053966.1 MGP_C3HHeJ_G0025365.1 mouse_genomes_project 2 31267485 31476408 - MGP_C3HHeJ_P0053966 Ralgps1 protein_coding protein_coding MGP_C3HHeJ_T0053967.1 MGP_C3HHeJ_G0025365.1 mouse_genomes_project 2 31267489 31476408 - MGP_C3HHeJ_P0053967 Ralgps1 protein_coding protein_coding MGP_C3HHeJ_T0053968.1 MGP_C3HHeJ_G0025365.1 mouse_genomes_project 2 31267489 31476408 - MGP_C3HHeJ_P0053968 Ralgps1 protein_coding protein_coding MGP_C3HHeJ_T0053969.1 MGP_C3HHeJ_G0025365.1 mouse_genomes_project 2 31271041 31476408 - MGP_C3HHeJ_P0053969 Ralgps1 protein_coding protein_coding MGP_C3HHeJ_T0053970.1 MGP_C3HHeJ_G0025365.1 mouse_genomes_project 2 31277375 31292194 - Ralgps1 protein_coding processed_transcript MGP_C3HHeJ_T0053975.1 MGP_C3HHeJ_G0025365.1 mouse_genomes_project 2 31393364 31476408 - Ralgps1 protein_coding retained_intron MGP_C3HHeJ_T0013294.1 MGP_C3HHeJ_G0011398.1 mouse_genomes_project 2 13349634 13350247 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056602.1 MGP_C3HHeJ_G0026072.1 mouse_genomes_project 2 121316153 121343204 - MGP_C3HHeJ_P0056602 Rpap1 protein_coding protein_coding MGP_C3HHeJ_T0056603.1 MGP_C3HHeJ_G0026072.1 mouse_genomes_project 2 121316807 121343228 - MGP_C3HHeJ_P0056603 Rpap1 protein_coding protein_coding MGP_C3HHeJ_T0056604.1 MGP_C3HHeJ_G0026072.1 mouse_genomes_project 2 121316808 121343237 - MGP_C3HHeJ_P0056604 Rpap1 protein_coding protein_coding MGP_C3HHeJ_T0056605.1 MGP_C3HHeJ_G0026072.1 mouse_genomes_project 2 121316811 121343200 - MGP_C3HHeJ_P0056605 Rpap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056606.1 MGP_C3HHeJ_G0026072.1 mouse_genomes_project 2 121316814 121343220 - MGP_C3HHeJ_P0056606 Rpap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056607.1 MGP_C3HHeJ_G0026072.1 mouse_genomes_project 2 121321604 121343219 - Rpap1 protein_coding retained_intron MGP_C3HHeJ_T0056608.1 MGP_C3HHeJ_G0026072.1 mouse_genomes_project 2 121332664 121343214 - Rpap1 protein_coding retained_intron MGP_C3HHeJ_T0056609.1 MGP_C3HHeJ_G0026072.1 mouse_genomes_project 2 121332878 121336268 - Rpap1 protein_coding retained_intron MGP_C3HHeJ_T0056610.1 MGP_C3HHeJ_G0026072.1 mouse_genomes_project 2 121333217 121343229 - Rpap1 protein_coding processed_transcript MGP_C3HHeJ_T0100485.1 MGP_C3HHeJ_G0038679.1 mouse_genomes_project 2 132450019 132450152 + Gm24451 snoRNA snoRNA MGP_C3HHeJ_T0013422.1 MGP_C3HHeJ_G0011526.1 mouse_genomes_project 2 59050758 59051067 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059100.1 MGP_C3HHeJ_G0026638.1 mouse_genomes_project 2 171945952 171977313 - Fam65c protein_coding processed_transcript MGP_C3HHeJ_T0059101.1 MGP_C3HHeJ_G0026638.1 mouse_genomes_project 2 171945954 171977313 - MGP_C3HHeJ_P0059101 Fam65c protein_coding protein_coding MGP_C3HHeJ_T0059102.1 MGP_C3HHeJ_G0026638.1 mouse_genomes_project 2 171951989 171953687 - Fam65c protein_coding retained_intron MGP_C3HHeJ_T0059103.1 MGP_C3HHeJ_G0026638.1 mouse_genomes_project 2 171955701 171958247 - Fam65c protein_coding retained_intron MGP_C3HHeJ_T0017553.1 MGP_C3HHeJ_G0015181.1 mouse_genomes_project 2 51188918 51198772 + A430018G15Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017554.1 MGP_C3HHeJ_G0015181.1 mouse_genomes_project 2 51188918 51195782 + A430018G15Rik processed_transcript processed_transcript MGP_C3HHeJ_T0000990.1 MGP_C3HHeJ_G0000927.1 mouse_genomes_project 2 4006820 4017785 + TEC TEC MGP_C3HHeJ_T0055476.1 MGP_C3HHeJ_G0025724.1 mouse_genomes_project 2 87105519 87106458 - MGP_C3HHeJ_P0055476 Olfr259 protein_coding protein_coding MGP_C3HHeJ_T0054494.1 MGP_C3HHeJ_G0025472.1 mouse_genomes_project 2 52911372 52912832 - MGP_C3HHeJ_P0054494 Rprm protein_coding protein_coding MGP_C3HHeJ_T0056464.1 MGP_C3HHeJ_G0026036.1 mouse_genomes_project 2 120018736 120040457 - MGP_C3HHeJ_P0056464 Bmf protein_coding protein_coding MGP_C3HHeJ_T0056465.1 MGP_C3HHeJ_G0026036.1 mouse_genomes_project 2 120020211 120038326 - MGP_C3HHeJ_P0056465 Bmf protein_coding protein_coding MGP_C3HHeJ_T0056466.1 MGP_C3HHeJ_G0026036.1 mouse_genomes_project 2 120021949 120035354 - Bmf protein_coding processed_transcript MGP_C3HHeJ_T0056467.1 MGP_C3HHeJ_G0026036.1 mouse_genomes_project 2 120022030 120036083 - Bmf protein_coding processed_transcript MGP_C3HHeJ_T0056468.1 MGP_C3HHeJ_G0026036.1 mouse_genomes_project 2 120022397 120040432 - Bmf protein_coding processed_transcript MGP_C3HHeJ_T0056469.1 MGP_C3HHeJ_G0026036.1 mouse_genomes_project 2 120035950 120037794 - Bmf protein_coding processed_transcript MGP_C3HHeJ_T0056470.1 MGP_C3HHeJ_G0026036.1 mouse_genomes_project 2 120036002 120038366 - Bmf protein_coding processed_transcript MGP_C3HHeJ_T0056471.1 MGP_C3HHeJ_G0026036.1 mouse_genomes_project 2 120037675 120040445 - Bmf protein_coding processed_transcript MGP_C3HHeJ_T0057535.1 MGP_C3HHeJ_G0026265.1 mouse_genomes_project 2 135086180 135092601 - Trmt6 protein_coding retained_intron MGP_C3HHeJ_T0057536.1 MGP_C3HHeJ_G0026265.1 mouse_genomes_project 2 135086180 135098031 - Trmt6 protein_coding processed_transcript MGP_C3HHeJ_T0057537.1 MGP_C3HHeJ_G0026265.1 mouse_genomes_project 2 135086180 135098030 - MGP_C3HHeJ_P0057537 Trmt6 protein_coding protein_coding MGP_C3HHeJ_T0057538.1 MGP_C3HHeJ_G0026265.1 mouse_genomes_project 2 135092382 135097734 - Trmt6 protein_coding processed_transcript MGP_C3HHeJ_T0057539.1 MGP_C3HHeJ_G0026265.1 mouse_genomes_project 2 135092407 135094481 - Trmt6 protein_coding processed_transcript MGP_C3HHeJ_T0057540.1 MGP_C3HHeJ_G0026265.1 mouse_genomes_project 2 135093739 135097989 - Trmt6 protein_coding processed_transcript MGP_C3HHeJ_T0056404.1 MGP_C3HHeJ_G0026023.1 mouse_genomes_project 2 115788106 115930045 - MGP_C3HHeJ_P0056404 Dph6 protein_coding protein_coding MGP_C3HHeJ_T0056405.1 MGP_C3HHeJ_G0026023.1 mouse_genomes_project 2 115789669 115818361 - Dph6 protein_coding processed_transcript MGP_C3HHeJ_T0056406.1 MGP_C3HHeJ_G0026023.1 mouse_genomes_project 2 115789763 115930063 - MGP_C3HHeJ_P0056406 Dph6 protein_coding protein_coding MGP_C3HHeJ_T0056407.1 MGP_C3HHeJ_G0026023.1 mouse_genomes_project 2 115792721 115930120 - Dph6 protein_coding retained_intron MGP_C3HHeJ_T0056408.1 MGP_C3HHeJ_G0026023.1 mouse_genomes_project 2 115917340 115930063 - Dph6 protein_coding retained_intron MGP_C3HHeJ_T0099178.1 MGP_C3HHeJ_G0037372.1 mouse_genomes_project 2 22649540 22649647 - Gm25518 snRNA snRNA MGP_C3HHeJ_T0013455.1 MGP_C3HHeJ_G0011559.1 mouse_genomes_project 2 72440999 72441296 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101899.1 MGP_C3HHeJ_G0039864.1 mouse_genomes_project 2 86417807 86418749 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0057960.1 MGP_C3HHeJ_G0026377.1 mouse_genomes_project 2 155480217 155483287 - MGP_C3HHeJ_P0057960 Zcchc3 protein_coding protein_coding MGP_C3HHeJ_T0007229.1 MGP_C3HHeJ_G0005922.1 mouse_genomes_project 2 119597443 119598040 - Gm29233 lincRNA lincRNA MGP_C3HHeJ_T0101917.1 MGP_C3HHeJ_G0039882.1 mouse_genomes_project 2 90327994 90328924 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0058670.1 MGP_C3HHeJ_G0026528.1 mouse_genomes_project 2 165130901 166297379 - MGP_C3HHeJ_P0058670 Ptprt protein_coding protein_coding MGP_C3HHeJ_T0058671.1 MGP_C3HHeJ_G0026528.1 mouse_genomes_project 2 165130901 166297379 - MGP_C3HHeJ_P0058671 Ptprt protein_coding protein_coding MGP_C3HHeJ_T0058672.1 MGP_C3HHeJ_G0026528.1 mouse_genomes_project 2 165135266 166297326 - MGP_C3HHeJ_P0058672 Ptprt protein_coding protein_coding MGP_C3HHeJ_T0058673.1 MGP_C3HHeJ_G0026528.1 mouse_genomes_project 2 165136417 166297379 - MGP_C3HHeJ_P0058673 Ptprt protein_coding protein_coding MGP_C3HHeJ_T0058674.1 MGP_C3HHeJ_G0026528.1 mouse_genomes_project 2 165308259 165413203 - Ptprt protein_coding processed_transcript MGP_C3HHeJ_T0058675.1 MGP_C3HHeJ_G0026528.1 mouse_genomes_project 2 165650269 165774349 - Ptprt protein_coding processed_transcript MGP_C3HHeJ_T0056760.1 MGP_C3HHeJ_G0026095.1 mouse_genomes_project 2 122479366 122597056 - MGP_C3HHeJ_P0056760 Ubr1 protein_coding protein_coding MGP_C3HHeJ_T0056761.1 MGP_C3HHeJ_G0026095.1 mouse_genomes_project 2 122481670 122490673 - Ubr1 protein_coding processed_transcript MGP_C3HHeJ_T0056762.1 MGP_C3HHeJ_G0026095.1 mouse_genomes_project 2 122492196 122511328 - Ubr1 protein_coding processed_transcript MGP_C3HHeJ_T0056763.1 MGP_C3HHeJ_G0026095.1 mouse_genomes_project 2 122523083 122535793 - Ubr1 protein_coding processed_transcript MGP_C3HHeJ_T0056764.1 MGP_C3HHeJ_G0026095.1 mouse_genomes_project 2 122543622 122553118 - Ubr1 protein_coding processed_transcript MGP_C3HHeJ_T0056765.1 MGP_C3HHeJ_G0026095.1 mouse_genomes_project 2 122568177 122596954 - Ubr1 protein_coding retained_intron MGP_C3HHeJ_T0056766.1 MGP_C3HHeJ_G0026095.1 mouse_genomes_project 2 122588460 122597033 - Ubr1 protein_coding retained_intron MGP_C3HHeJ_T0055427.1 MGP_C3HHeJ_G0025677.1 mouse_genomes_project 2 85722596 85723520 + MGP_C3HHeJ_P0055427 Olfr1026 protein_coding protein_coding MGP_C3HHeJ_T0058850.1 MGP_C3HHeJ_G0026592.1 mouse_genomes_project 2 168549259 168552962 - Acot8 protein_coding retained_intron MGP_C3HHeJ_T0058851.1 MGP_C3HHeJ_G0026592.1 mouse_genomes_project 2 168549259 168564388 - MGP_C3HHeJ_P0058851 Acot8 protein_coding protein_coding MGP_C3HHeJ_T0058852.1 MGP_C3HHeJ_G0026592.1 mouse_genomes_project 2 168549259 168564388 - MGP_C3HHeJ_P0058852 Acot8 protein_coding protein_coding MGP_C3HHeJ_T0058853.1 MGP_C3HHeJ_G0026592.1 mouse_genomes_project 2 168552280 168564387 - MGP_C3HHeJ_P0058853 Acot8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058854.1 MGP_C3HHeJ_G0026592.1 mouse_genomes_project 2 168558958 168564328 - Acot8 protein_coding retained_intron MGP_C3HHeJ_T0055044.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73339259 73418325 - MGP_C3HHeJ_P0055044 Atf2 protein_coding protein_coding MGP_C3HHeJ_T0055045.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73339270 73418314 - Atf2 protein_coding processed_transcript MGP_C3HHeJ_T0055046.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73341572 73387462 - MGP_C3HHeJ_P0055046 Atf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055047.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73341672 73392130 - MGP_C3HHeJ_P0055047 Atf2 protein_coding protein_coding MGP_C3HHeJ_T0055048.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73349056 73418299 - Atf2 protein_coding processed_transcript MGP_C3HHeJ_T0055049.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73352498 73418216 - MGP_C3HHeJ_P0055049 Atf2 protein_coding protein_coding MGP_C3HHeJ_T0055050.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73368524 73418314 - Atf2 protein_coding processed_transcript MGP_C3HHeJ_T0055051.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73369094 73418279 - MGP_C3HHeJ_P0055051 Atf2 protein_coding protein_coding MGP_C3HHeJ_T0055052.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73369095 73418239 - MGP_C3HHeJ_P0055052 Atf2 protein_coding protein_coding MGP_C3HHeJ_T0055053.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73369389 73374260 - Atf2 protein_coding processed_transcript MGP_C3HHeJ_T0055054.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73387099 73418280 - Atf2 protein_coding processed_transcript MGP_C3HHeJ_T0055055.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73387192 73418314 - Atf2 protein_coding processed_transcript MGP_C3HHeJ_T0055056.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73398214 73418236 - Atf2 protein_coding processed_transcript MGP_C3HHeJ_T0013699.1 MGP_C3HHeJ_G0011803.1 mouse_genomes_project 2 161955318 161955510 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054752.1 MGP_C3HHeJ_G0025515.1 mouse_genomes_project 2 65370346 65444363 - MGP_C3HHeJ_P0054752 Ttc21b protein_coding protein_coding MGP_C3HHeJ_T0054753.1 MGP_C3HHeJ_G0025515.1 mouse_genomes_project 2 65403933 65423022 - Ttc21b protein_coding retained_intron MGP_C3HHeJ_T0054754.1 MGP_C3HHeJ_G0025515.1 mouse_genomes_project 2 65417012 65437246 - Ttc21b protein_coding retained_intron MGP_C3HHeJ_T0058298.1 MGP_C3HHeJ_G0026466.1 mouse_genomes_project 2 159249731 159251758 + MGP_C3HHeJ_P0058298 Gm15557 protein_coding protein_coding MGP_C3HHeJ_T0054074.1 MGP_C3HHeJ_G0025382.1 mouse_genomes_project 2 33308152 33325373 - MGP_C3HHeJ_P0054074 AI182371 protein_coding unknown_likely_coding MGP_C3HHeJ_T0054075.1 MGP_C3HHeJ_G0025382.1 mouse_genomes_project 2 33309740 33325405 - MGP_C3HHeJ_P0054075 AI182371 protein_coding protein_coding MGP_C3HHeJ_T0054076.1 MGP_C3HHeJ_G0025382.1 mouse_genomes_project 2 33311735 33325404 - MGP_C3HHeJ_P0054076 AI182371 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054077.1 MGP_C3HHeJ_G0025382.1 mouse_genomes_project 2 33312076 33319666 - AI182371 protein_coding processed_transcript MGP_C3HHeJ_T0054078.1 MGP_C3HHeJ_G0025382.1 mouse_genomes_project 2 33314783 33326263 - AI182371 protein_coding processed_transcript MGP_C3HHeJ_T0057024.1 MGP_C3HHeJ_G0026146.1 mouse_genomes_project 2 127203293 127213789 + MGP_C3HHeJ_P0057024 Dut protein_coding protein_coding MGP_C3HHeJ_T0057025.1 MGP_C3HHeJ_G0026146.1 mouse_genomes_project 2 127203585 127214659 + MGP_C3HHeJ_P0057025 Dut protein_coding protein_coding MGP_C3HHeJ_T0057026.1 MGP_C3HHeJ_G0026146.1 mouse_genomes_project 2 127204003 127205130 + Dut protein_coding processed_transcript MGP_C3HHeJ_T0053590.1 MGP_C3HHeJ_G0025310.1 mouse_genomes_project 2 28811240 28860578 + MGP_C3HHeJ_P0053590 Prrx2 protein_coding protein_coding MGP_C3HHeJ_T0053591.1 MGP_C3HHeJ_G0025310.1 mouse_genomes_project 2 28822523 28860607 + MGP_C3HHeJ_P0053591 Prrx2 protein_coding protein_coding MGP_C3HHeJ_T0053592.1 MGP_C3HHeJ_G0025310.1 mouse_genomes_project 2 28822908 28858013 + Prrx2 protein_coding retained_intron MGP_C3HHeJ_T0053593.1 MGP_C3HHeJ_G0025310.1 mouse_genomes_project 2 28858674 28860476 + Prrx2 protein_coding retained_intron MGP_C3HHeJ_T0007219.1 MGP_C3HHeJ_G0005915.1 mouse_genomes_project 2 117426388 117445241 + G630016G05Rik lincRNA lincRNA MGP_C3HHeJ_T0007220.1 MGP_C3HHeJ_G0005915.1 mouse_genomes_project 2 117427049 117445240 + G630016G05Rik lincRNA lincRNA MGP_C3HHeJ_T0101925.1 MGP_C3HHeJ_G0039890.1 mouse_genomes_project 2 123144078 123194905 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099215.1 MGP_C3HHeJ_G0037409.1 mouse_genomes_project 2 131450260 131450411 - Gm25703 snRNA snRNA MGP_C3HHeJ_T0052392.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14766474 15157582 - MGP_C3HHeJ_P0052392 protein_coding protein_coding MGP_C3HHeJ_T0052393.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14766619 14885066 - MGP_C3HHeJ_P0052393 protein_coding protein_coding MGP_C3HHeJ_T0052394.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14771261 14782984 - protein_coding processed_transcript MGP_C3HHeJ_T0052395.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14771261 14884672 - MGP_C3HHeJ_P0052395 protein_coding unknown_likely_coding MGP_C3HHeJ_T0052396.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14773322 14949504 - MGP_C3HHeJ_P0052396 protein_coding protein_coding MGP_C3HHeJ_T0052397.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14798061 14811984 - protein_coding processed_transcript MGP_C3HHeJ_T0052398.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14799679 14812027 - protein_coding processed_transcript MGP_C3HHeJ_T0052399.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14799936 14812053 - MGP_C3HHeJ_P0052399 protein_coding protein_coding MGP_C3HHeJ_T0052400.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14802656 14812014 - protein_coding processed_transcript MGP_C3HHeJ_T0052401.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14813947 14886921 - MGP_C3HHeJ_P0052401 protein_coding protein_coding MGP_C3HHeJ_T0052402.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14813950 14886923 - MGP_C3HHeJ_P0052402 protein_coding protein_coding MGP_C3HHeJ_T0052403.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14818252 14884755 - MGP_C3HHeJ_P0052403 protein_coding protein_coding MGP_C3HHeJ_T0052404.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14855188 14946561 - protein_coding processed_transcript MGP_C3HHeJ_T0052405.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 15153924 15158003 - protein_coding processed_transcript MGP_C3HHeJ_T0004030.1 MGP_C3HHeJ_G0003565.1 mouse_genomes_project 2 137691419 137951329 - 9630028H03Rik antisense antisense MGP_C3HHeJ_T0004031.1 MGP_C3HHeJ_G0003565.1 mouse_genomes_project 2 137948274 137951041 - 9630028H03Rik antisense antisense MGP_C3HHeJ_T0055695.1 MGP_C3HHeJ_G0025859.1 mouse_genomes_project 2 91371254 91381773 + MGP_C3HHeJ_P0055695 Rapsn protein_coding protein_coding MGP_C3HHeJ_T0055696.1 MGP_C3HHeJ_G0025859.1 mouse_genomes_project 2 91371261 91381770 + MGP_C3HHeJ_P0055696 Rapsn protein_coding protein_coding MGP_C3HHeJ_T0055697.1 MGP_C3HHeJ_G0025859.1 mouse_genomes_project 2 91371275 91381773 + MGP_C3HHeJ_P0055697 Rapsn protein_coding protein_coding MGP_C3HHeJ_T0055698.1 MGP_C3HHeJ_G0025859.1 mouse_genomes_project 2 91378763 91381524 + Rapsn protein_coding retained_intron MGP_C3HHeJ_T0059082.1 MGP_C3HHeJ_G0026632.1 mouse_genomes_project 2 171421608 171447849 + MGP_C3HHeJ_P0059082 Rnf114 protein_coding protein_coding MGP_C3HHeJ_T0059083.1 MGP_C3HHeJ_G0026632.1 mouse_genomes_project 2 171433435 171447856 + MGP_C3HHeJ_P0059083 Rnf114 protein_coding protein_coding MGP_C3HHeJ_T0059084.1 MGP_C3HHeJ_G0026632.1 mouse_genomes_project 2 171433792 171447847 + MGP_C3HHeJ_P0059084 Rnf114 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056386.1 MGP_C3HHeJ_G0026016.1 mouse_genomes_project 2 115013190 115026383 - MGP_C3HHeJ_P0056386 Grem1 protein_coding protein_coding MGP_C3HHeJ_T0056074.1 MGP_C3HHeJ_G0025920.1 mouse_genomes_project 2 103521352 103613937 - MGP_C3HHeJ_P0056074 Cd44 protein_coding protein_coding MGP_C3HHeJ_T0056075.1 MGP_C3HHeJ_G0025920.1 mouse_genomes_project 2 103521352 103613897 - MGP_C3HHeJ_P0056075 Cd44 protein_coding protein_coding MGP_C3HHeJ_T0056076.1 MGP_C3HHeJ_G0025920.1 mouse_genomes_project 2 103522741 103613767 - MGP_C3HHeJ_P0056076 Cd44 protein_coding protein_coding MGP_C3HHeJ_T0056077.1 MGP_C3HHeJ_G0025920.1 mouse_genomes_project 2 103522757 103613782 - MGP_C3HHeJ_P0056077 Cd44 protein_coding protein_coding MGP_C3HHeJ_T0056078.1 MGP_C3HHeJ_G0025920.1 mouse_genomes_project 2 103524330 103613622 - MGP_C3HHeJ_P0056078 Cd44 protein_coding protein_coding MGP_C3HHeJ_T0056079.1 MGP_C3HHeJ_G0025920.1 mouse_genomes_project 2 103524330 103613641 - MGP_C3HHeJ_P0056079 Cd44 protein_coding protein_coding MGP_C3HHeJ_T0056080.1 MGP_C3HHeJ_G0025920.1 mouse_genomes_project 2 103524340 103613622 - MGP_C3HHeJ_P0056080 Cd44 protein_coding protein_coding MGP_C3HHeJ_T0056081.1 MGP_C3HHeJ_G0025920.1 mouse_genomes_project 2 103524343 103613618 - MGP_C3HHeJ_P0056081 Cd44 protein_coding protein_coding MGP_C3HHeJ_T0056082.1 MGP_C3HHeJ_G0025920.1 mouse_genomes_project 2 103562814 103613730 - Cd44 protein_coding retained_intron MGP_C3HHeJ_T0100475.1 MGP_C3HHeJ_G0038669.1 mouse_genomes_project 2 108790954 108791086 - Gm23439 snoRNA snoRNA MGP_C3HHeJ_T0013512.1 MGP_C3HHeJ_G0011616.1 mouse_genomes_project 2 88676095 88686317 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055610.1 MGP_C3HHeJ_G0025834.1 mouse_genomes_project 2 90044955 90050483 + MGP_C3HHeJ_P0055610 Olfr1255 protein_coding protein_coding MGP_C3HHeJ_T0011402.1 MGP_C3HHeJ_G0009535.1 mouse_genomes_project 2 43631619 43631696 + Gm27645 misc_RNA misc_RNA MGP_C3HHeJ_T0056868.1 MGP_C3HHeJ_G0026109.1 mouse_genomes_project 2 123000695 123017992 - MGP_C3HHeJ_P0056868 Strc protein_coding protein_coding MGP_C3HHeJ_T0056869.1 MGP_C3HHeJ_G0026109.1 mouse_genomes_project 2 123005448 123012066 - MGP_C3HHeJ_P0056869 Strc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056870.1 MGP_C3HHeJ_G0026109.1 mouse_genomes_project 2 123009925 123012050 - Strc protein_coding processed_transcript MGP_C3HHeJ_T0056871.1 MGP_C3HHeJ_G0026109.1 mouse_genomes_project 2 123010004 123011829 - Strc protein_coding retained_intron MGP_C3HHeJ_T0056872.1 MGP_C3HHeJ_G0026109.1 mouse_genomes_project 2 123013382 123024700 - Strc protein_coding retained_intron MGP_C3HHeJ_T0098116.1 MGP_C3HHeJ_G0036328.1 mouse_genomes_project 2 170526620 170526736 - Gm23152 rRNA rRNA MGP_C3HHeJ_T0010368.1 MGP_C3HHeJ_G0008501.1 mouse_genomes_project 2 124477477 124477556 + Mir147 miRNA miRNA MGP_C3HHeJ_T0003892.1 MGP_C3HHeJ_G0003472.1 mouse_genomes_project 2 36661880 36662840 - Gm27197 antisense antisense MGP_C3HHeJ_T0017555.1 MGP_C3HHeJ_G0015182.1 mouse_genomes_project 2 56018634 56071129 - BB557941 processed_transcript processed_transcript MGP_C3HHeJ_T0100461.1 MGP_C3HHeJ_G0038655.1 mouse_genomes_project 2 64509891 64510005 - Gm24138 snoRNA snoRNA MGP_C3HHeJ_T0052902.1 MGP_C3HHeJ_G0025191.1 mouse_genomes_project 2 23263239 23269552 - MGP_C3HHeJ_P0052902 Gm996 protein_coding protein_coding MGP_C3HHeJ_T0052903.1 MGP_C3HHeJ_G0025191.1 mouse_genomes_project 2 23263253 23269581 - MGP_C3HHeJ_P0052903 Gm996 protein_coding protein_coding MGP_C3HHeJ_T0052904.1 MGP_C3HHeJ_G0025191.1 mouse_genomes_project 2 23264796 23267721 - MGP_C3HHeJ_P0052904 Gm996 protein_coding protein_coding MGP_C3HHeJ_T0052905.1 MGP_C3HHeJ_G0025191.1 mouse_genomes_project 2 23267634 23268087 - MGP_C3HHeJ_P0052905 Gm996 protein_coding protein_coding MGP_C3HHeJ_T0098399.1 MGP_C3HHeJ_G0036605.1 mouse_genomes_project 2 131632550 131656129 - Gm14040 sense_intronic sense_intronic MGP_C3HHeJ_T0056789.1 MGP_C3HHeJ_G0026100.1 mouse_genomes_project 2 122724336 122740352 - MGP_C3HHeJ_P0056789 Tgm7 protein_coding protein_coding MGP_C3HHeJ_T0053140.1 MGP_C3HHeJ_G0025238.1 mouse_genomes_project 2 24705331 24716104 - MGP_C3HHeJ_P0053140 Rexo4 protein_coding protein_coding MGP_C3HHeJ_T0053141.1 MGP_C3HHeJ_G0025238.1 mouse_genomes_project 2 24705334 24716104 - MGP_C3HHeJ_P0053141 Rexo4 protein_coding protein_coding MGP_C3HHeJ_T0053142.1 MGP_C3HHeJ_G0025238.1 mouse_genomes_project 2 24706094 24708355 - Rexo4 protein_coding processed_transcript MGP_C3HHeJ_T0053143.1 MGP_C3HHeJ_G0025238.1 mouse_genomes_project 2 24706196 24707453 - Rexo4 protein_coding processed_transcript MGP_C3HHeJ_T0053144.1 MGP_C3HHeJ_G0025238.1 mouse_genomes_project 2 24706309 24715997 - MGP_C3HHeJ_P0053144 Rexo4 protein_coding protein_coding MGP_C3HHeJ_T0053145.1 MGP_C3HHeJ_G0025238.1 mouse_genomes_project 2 24706769 24708088 - Rexo4 protein_coding processed_transcript MGP_C3HHeJ_T0053146.1 MGP_C3HHeJ_G0025238.1 mouse_genomes_project 2 24708101 24715996 - Rexo4 protein_coding processed_transcript MGP_C3HHeJ_T0053147.1 MGP_C3HHeJ_G0025238.1 mouse_genomes_project 2 24709808 24711984 - Rexo4 protein_coding processed_transcript MGP_C3HHeJ_T0053148.1 MGP_C3HHeJ_G0025238.1 mouse_genomes_project 2 24714596 24716042 - Rexo4 protein_coding processed_transcript MGP_C3HHeJ_T0057790.1 MGP_C3HHeJ_G0026323.1 mouse_genomes_project 2 150176251 150182121 + MGP_C3HHeJ_P0057790 Pax1 protein_coding protein_coding MGP_C3HHeJ_T0057791.1 MGP_C3HHeJ_G0026323.1 mouse_genomes_project 2 150179236 150188625 + MGP_C3HHeJ_P0057791 Pax1 protein_coding protein_coding MGP_C3HHeJ_T0057792.1 MGP_C3HHeJ_G0026323.1 mouse_genomes_project 2 150182523 150207950 + Pax1 protein_coding retained_intron MGP_C3HHeJ_T0013380.1 MGP_C3HHeJ_G0011484.1 mouse_genomes_project 2 46742675 46743108 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052941.1 MGP_C3HHeJ_G0025204.1 mouse_genomes_project 2 23464681 23467944 + MGP_C3HHeJ_P0052941 Lcn11 protein_coding protein_coding MGP_C3HHeJ_T0013382.1 MGP_C3HHeJ_G0011486.1 mouse_genomes_project 2 47019504 47019818 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058708.1 MGP_C3HHeJ_G0026538.1 mouse_genomes_project 2 167085854 167105374 - MGP_C3HHeJ_P0058708 Oser1 protein_coding protein_coding MGP_C3HHeJ_T0058709.1 MGP_C3HHeJ_G0026538.1 mouse_genomes_project 2 167103553 167105227 - Oser1 protein_coding processed_transcript MGP_C3HHeJ_T0053917.1 MGP_C3HHeJ_G0025359.1 mouse_genomes_project 2 30901006 30962571 - MGP_C3HHeJ_P0053917 Stxbp1 protein_coding protein_coding MGP_C3HHeJ_T0053918.1 MGP_C3HHeJ_G0025359.1 mouse_genomes_project 2 30901011 30931290 - Stxbp1 protein_coding processed_transcript MGP_C3HHeJ_T0053919.1 MGP_C3HHeJ_G0025359.1 mouse_genomes_project 2 30901365 30962528 - MGP_C3HHeJ_P0053919 Stxbp1 protein_coding protein_coding MGP_C3HHeJ_T0053920.1 MGP_C3HHeJ_G0025359.1 mouse_genomes_project 2 30930613 30931696 - Stxbp1 protein_coding retained_intron MGP_C3HHeJ_T0053561.1 MGP_C3HHeJ_G0025306.1 mouse_genomes_project 2 28557993 28573452 + MGP_C3HHeJ_P0053561 Cstad protein_coding protein_coding MGP_C3HHeJ_T0053562.1 MGP_C3HHeJ_G0025306.1 mouse_genomes_project 2 28568948 28572726 + Cstad protein_coding processed_transcript MGP_C3HHeJ_T0013687.1 MGP_C3HHeJ_G0011791.1 mouse_genomes_project 2 159643266 159643525 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013340.1 MGP_C3HHeJ_G0011444.1 mouse_genomes_project 2 31457759 31458026 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055191.1 MGP_C3HHeJ_G0025606.1 mouse_genomes_project 2 77540540 77592480 - MGP_C3HHeJ_P0055191 Cwc22 protein_coding protein_coding MGP_C3HHeJ_T0055192.1 MGP_C3HHeJ_G0025606.1 mouse_genomes_project 2 77550773 77552672 - Cwc22 protein_coding processed_transcript MGP_C3HHeJ_T0055193.1 MGP_C3HHeJ_G0025606.1 mouse_genomes_project 2 77560931 77592504 - Cwc22 protein_coding processed_transcript MGP_C3HHeJ_T0055194.1 MGP_C3HHeJ_G0025606.1 mouse_genomes_project 2 77571372 77592488 - Cwc22 protein_coding processed_transcript MGP_C3HHeJ_T0055195.1 MGP_C3HHeJ_G0025606.1 mouse_genomes_project 2 77574616 77592243 - MGP_C3HHeJ_P0055195 Cwc22 protein_coding protein_coding MGP_C3HHeJ_T0055196.1 MGP_C3HHeJ_G0025606.1 mouse_genomes_project 2 77574702 77592494 - MGP_C3HHeJ_P0055196 Cwc22 protein_coding protein_coding MGP_C3HHeJ_T0055197.1 MGP_C3HHeJ_G0025606.1 mouse_genomes_project 2 77574758 77582498 - Cwc22 protein_coding processed_transcript MGP_C3HHeJ_T0055198.1 MGP_C3HHeJ_G0025606.1 mouse_genomes_project 2 77576104 77582556 - Cwc22 protein_coding processed_transcript MGP_C3HHeJ_T0054389.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47587037 47904406 + MGP_C3HHeJ_P0054389 Mbd5 protein_coding protein_coding MGP_C3HHeJ_T0054390.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47587047 47756439 + Mbd5 protein_coding processed_transcript MGP_C3HHeJ_T0054391.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47587052 47966176 + MGP_C3HHeJ_P0054391 Mbd5 protein_coding protein_coding MGP_C3HHeJ_T0054392.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47587491 47658507 + Mbd5 protein_coding processed_transcript MGP_C3HHeJ_T0054393.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47587492 47591599 + Mbd5 protein_coding processed_transcript MGP_C3HHeJ_T0054394.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47587594 47756303 + Mbd5 protein_coding processed_transcript MGP_C3HHeJ_T0054395.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47587672 47886831 + Mbd5 protein_coding processed_transcript MGP_C3HHeJ_T0054396.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47587678 47696018 + Mbd5 protein_coding processed_transcript MGP_C3HHeJ_T0054397.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47887242 47968908 + MGP_C3HHeJ_P0054397 Mbd5 protein_coding protein_coding MGP_C3HHeJ_T0054398.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47887443 47916502 + MGP_C3HHeJ_P0054398 Mbd5 protein_coding protein_coding MGP_C3HHeJ_T0054399.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47900408 47966202 + MGP_C3HHeJ_P0054399 Mbd5 protein_coding protein_coding MGP_C3HHeJ_T0054400.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47916606 47974623 + MGP_C3HHeJ_P0054400 Mbd5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054401.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47923892 47965856 + MGP_C3HHeJ_P0054401 Mbd5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054402.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47923893 47965867 + MGP_C3HHeJ_P0054402 Mbd5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054403.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47924041 47966090 + MGP_C3HHeJ_P0054403 Mbd5 protein_coding protein_coding MGP_C3HHeJ_T0010366.1 MGP_C3HHeJ_G0008499.1 mouse_genomes_project 2 123095169 123095270 - Gm22953 miRNA miRNA MGP_C3HHeJ_T0004118.1 MGP_C3HHeJ_G0003632.1 mouse_genomes_project 2 184885656 184893530 + Gata5os antisense antisense MGP_C3HHeJ_T0055625.1 MGP_C3HHeJ_G0025842.1 mouse_genomes_project 2 90252709 90253643 + MGP_C3HHeJ_P0055625 Olfr1263 protein_coding protein_coding MGP_C3HHeJ_T0098103.1 MGP_C3HHeJ_G0036315.1 mouse_genomes_project 2 81314770 81314878 - Gm23900 rRNA rRNA MGP_C3HHeJ_T0054659.1 MGP_C3HHeJ_G0025500.1 mouse_genomes_project 2 61058311 61338209 + MGP_C3HHeJ_P0054659 Slc4a10 protein_coding protein_coding MGP_C3HHeJ_T0054660.1 MGP_C3HHeJ_G0025500.1 mouse_genomes_project 2 61058434 61336302 + Slc4a10 protein_coding processed_transcript MGP_C3HHeJ_T0054661.1 MGP_C3HHeJ_G0025500.1 mouse_genomes_project 2 61058434 61338209 + MGP_C3HHeJ_P0054661 Slc4a10 protein_coding protein_coding MGP_C3HHeJ_T0054662.1 MGP_C3HHeJ_G0025500.1 mouse_genomes_project 2 61058494 61338209 + MGP_C3HHeJ_P0054662 Slc4a10 protein_coding protein_coding MGP_C3HHeJ_T0054663.1 MGP_C3HHeJ_G0025500.1 mouse_genomes_project 2 61161219 61171617 + Slc4a10 protein_coding processed_transcript MGP_C3HHeJ_T0054664.1 MGP_C3HHeJ_G0025500.1 mouse_genomes_project 2 61276993 61278729 + Slc4a10 protein_coding processed_transcript MGP_C3HHeJ_T0054665.1 MGP_C3HHeJ_G0025500.1 mouse_genomes_project 2 61328106 61336856 + Slc4a10 protein_coding processed_transcript MGP_C3HHeJ_T0056409.1 MGP_C3HHeJ_G0026024.1 mouse_genomes_project 2 116929053 117131884 + MGP_C3HHeJ_P0056409 BC052040 protein_coding protein_coding MGP_C3HHeJ_T0056410.1 MGP_C3HHeJ_G0026024.1 mouse_genomes_project 2 116929070 117131884 + MGP_C3HHeJ_P0056410 BC052040 protein_coding protein_coding MGP_C3HHeJ_T0056411.1 MGP_C3HHeJ_G0026024.1 mouse_genomes_project 2 116929138 116992050 + BC052040 protein_coding processed_transcript MGP_C3HHeJ_T0057880.1 MGP_C3HHeJ_G0026356.1 mouse_genomes_project 2 153997421 154007577 - MGP_C3HHeJ_P0057880 protein_coding protein_coding MGP_C3HHeJ_T0013374.1 MGP_C3HHeJ_G0011478.1 mouse_genomes_project 2 40542011 40542244 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053045.1 MGP_C3HHeJ_G0025222.1 mouse_genomes_project 2 24135264 24138832 - MGP_C3HHeJ_P0053045 Inpp5e protein_coding protein_coding MGP_C3HHeJ_T0053046.1 MGP_C3HHeJ_G0025222.1 mouse_genomes_project 2 24135802 24148327 - Inpp5e protein_coding processed_transcript MGP_C3HHeJ_T0053047.1 MGP_C3HHeJ_G0025222.1 mouse_genomes_project 2 24136045 24148346 - Inpp5e protein_coding processed_transcript MGP_C3HHeJ_T0053048.1 MGP_C3HHeJ_G0025222.1 mouse_genomes_project 2 24136587 24147730 - MGP_C3HHeJ_P0053048 Inpp5e protein_coding protein_coding MGP_C3HHeJ_T0053049.1 MGP_C3HHeJ_G0025222.1 mouse_genomes_project 2 24138620 24139837 - Inpp5e protein_coding processed_transcript MGP_C3HHeJ_T0053050.1 MGP_C3HHeJ_G0025222.1 mouse_genomes_project 2 24138773 24141567 - MGP_C3HHeJ_P0053050 Inpp5e protein_coding protein_coding MGP_C3HHeJ_T0057637.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978508 145044148 + MGP_C3HHeJ_P0057637 Macrod2 protein_coding protein_coding MGP_C3HHeJ_T0057638.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978555 143296437 + MGP_C3HHeJ_P0057638 Macrod2 protein_coding protein_coding MGP_C3HHeJ_T0057639.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978555 145044148 + MGP_C3HHeJ_P0057639 Macrod2 protein_coding protein_coding MGP_C3HHeJ_T0057640.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978629 143006547 + MGP_C3HHeJ_P0057640 Macrod2 protein_coding protein_coding MGP_C3HHeJ_T0057641.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978632 143416360 + Macrod2 protein_coding retained_intron MGP_C3HHeJ_T0057642.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978634 143006550 + MGP_C3HHeJ_P0057642 Macrod2 protein_coding protein_coding MGP_C3HHeJ_T0057643.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978634 145035606 + MGP_C3HHeJ_P0057643 Macrod2 protein_coding protein_coding MGP_C3HHeJ_T0057644.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978641 143101871 + Macrod2 protein_coding processed_transcript MGP_C3HHeJ_T0057645.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978655 143236020 + Macrod2 protein_coding processed_transcript MGP_C3HHeJ_T0057646.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978659 143004091 + Macrod2 protein_coding processed_transcript MGP_C3HHeJ_T0057647.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978794 143004091 + MGP_C3HHeJ_P0057647 Macrod2 protein_coding protein_coding MGP_C3HHeJ_T0057651.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 143622069 143744574 + Macrod2 protein_coding processed_transcript MGP_C3HHeJ_T0057652.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 144176200 145044148 + Macrod2 protein_coding processed_transcript MGP_C3HHeJ_T0057653.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 144829964 144887963 + MGP_C3HHeJ_P0057653 Macrod2 protein_coding protein_coding MGP_C3HHeJ_T0003834.1 MGP_C3HHeJ_G0003427.1 mouse_genomes_project 2 15482147 15489245 + Gm13330 antisense antisense MGP_C3HHeJ_T0010312.1 MGP_C3HHeJ_G0008445.1 mouse_genomes_project 2 30109556 30109619 + Mir7674 miRNA miRNA MGP_C3HHeJ_T0100434.1 MGP_C3HHeJ_G0038628.1 mouse_genomes_project 2 24385555 24385694 - Snhg7 snoRNA snoRNA MGP_C3HHeJ_T0055552.1 MGP_C3HHeJ_G0025788.1 mouse_genomes_project 2 88836171 88898593 - MGP_C3HHeJ_P0055552 protein_coding protein_coding MGP_C3HHeJ_T0056110.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104440651 104484123 - MGP_C3HHeJ_P0056110 Nat10 protein_coding protein_coding MGP_C3HHeJ_T0056111.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104440655 104484094 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056112.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104440655 104484094 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056113.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104440655 104484050 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056114.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104441056 104443825 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056115.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104441322 104484057 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056116.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104451217 104453889 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056117.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104451412 104452655 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056118.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104453734 104461943 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056119.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104458145 104484123 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056120.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104468800 104483779 - MGP_C3HHeJ_P0056120 Nat10 protein_coding protein_coding MGP_C3HHeJ_T0056121.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104471599 104484114 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056122.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104477763 104484048 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056123.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104477900 104480072 - MGP_C3HHeJ_P0056123 Nat10 protein_coding protein_coding MGP_C3HHeJ_T0013679.1 MGP_C3HHeJ_G0011783.1 mouse_genomes_project 2 158460224 158460853 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004043.1 MGP_C3HHeJ_G0003573.1 mouse_genomes_project 2 146940005 146941614 + 4930444E06Rik antisense antisense MGP_C3HHeJ_T0013509.1 MGP_C3HHeJ_G0011613.1 mouse_genomes_project 2 87731665 87732122 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054136.1 MGP_C3HHeJ_G0025391.1 mouse_genomes_project 2 34004422 34250055 - MGP_C3HHeJ_P0054136 Ttll11 protein_coding protein_coding MGP_C3HHeJ_T0054137.1 MGP_C3HHeJ_G0025391.1 mouse_genomes_project 2 34004433 34250421 - MGP_C3HHeJ_P0054137 Ttll11 protein_coding protein_coding MGP_C3HHeJ_T0054138.1 MGP_C3HHeJ_G0025391.1 mouse_genomes_project 2 34004433 34250421 - MGP_C3HHeJ_P0054138 Ttll11 protein_coding protein_coding MGP_C3HHeJ_T0054139.1 MGP_C3HHeJ_G0025391.1 mouse_genomes_project 2 34004854 34250563 - MGP_C3HHeJ_P0054139 Ttll11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054140.1 MGP_C3HHeJ_G0025391.1 mouse_genomes_project 2 34041145 34144753 - Ttll11 protein_coding processed_transcript MGP_C3HHeJ_T0054141.1 MGP_C3HHeJ_G0025391.1 mouse_genomes_project 2 34152022 34209348 - Ttll11 protein_coding processed_transcript MGP_C3HHeJ_T0054142.1 MGP_C3HHeJ_G0025391.1 mouse_genomes_project 2 34165087 34250710 - Ttll11 protein_coding processed_transcript MGP_C3HHeJ_T0054143.1 MGP_C3HHeJ_G0025391.1 mouse_genomes_project 2 34165382 34214992 - MGP_C3HHeJ_P0054143 Ttll11 protein_coding protein_coding MGP_C3HHeJ_T0054144.1 MGP_C3HHeJ_G0025391.1 mouse_genomes_project 2 34165402 34216574 - MGP_C3HHeJ_P0054144 Ttll11 protein_coding protein_coding MGP_C3HHeJ_T0054193.1 MGP_C3HHeJ_G0025420.1 mouse_genomes_project 2 35374856 35375825 - MGP_C3HHeJ_P0054193 Olfr361 protein_coding protein_coding MGP_C3HHeJ_T0059417.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185569716 185584932 + MGP_C3HHeJ_P0059417 Arfgap1 protein_coding protein_coding MGP_C3HHeJ_T0059418.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185569725 185585000 + MGP_C3HHeJ_P0059418 Arfgap1 protein_coding protein_coding MGP_C3HHeJ_T0059419.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185569736 185584174 + MGP_C3HHeJ_P0059419 Arfgap1 protein_coding protein_coding MGP_C3HHeJ_T0059420.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185569756 185584934 + Arfgap1 protein_coding retained_intron MGP_C3HHeJ_T0059421.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185569758 185584920 + Arfgap1 protein_coding processed_transcript MGP_C3HHeJ_T0059422.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185569768 185584934 + MGP_C3HHeJ_P0059422 Arfgap1 protein_coding protein_coding MGP_C3HHeJ_T0059423.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185569770 185575414 + Arfgap1 protein_coding retained_intron MGP_C3HHeJ_T0059424.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185569791 185584785 + MGP_C3HHeJ_P0059424 Arfgap1 protein_coding protein_coding MGP_C3HHeJ_T0059425.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185573524 185583947 + MGP_C3HHeJ_P0059425 Arfgap1 protein_coding protein_coding MGP_C3HHeJ_T0059426.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185573539 185583844 + MGP_C3HHeJ_P0059426 Arfgap1 protein_coding protein_coding MGP_C3HHeJ_T0059427.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185575970 185579226 + Arfgap1 protein_coding retained_intron MGP_C3HHeJ_T0059428.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185575987 185580516 + Arfgap1 protein_coding retained_intron MGP_C3HHeJ_T0059429.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185576315 185579998 + Arfgap1 protein_coding retained_intron MGP_C3HHeJ_T0059430.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185582822 185583871 + Arfgap1 protein_coding processed_transcript MGP_C3HHeJ_T0013351.1 MGP_C3HHeJ_G0011455.1 mouse_genomes_project 2 35190048 35190544 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007240.1 MGP_C3HHeJ_G0005931.1 mouse_genomes_project 2 130293000 130308326 + Gm14009 lincRNA lincRNA MGP_C3HHeJ_T0057749.1 MGP_C3HHeJ_G0026315.1 mouse_genomes_project 2 148674016 148691305 - MGP_C3HHeJ_P0057749 Crnkl1 protein_coding protein_coding MGP_C3HHeJ_T0057750.1 MGP_C3HHeJ_G0026315.1 mouse_genomes_project 2 148686683 148687682 - Crnkl1 protein_coding retained_intron MGP_C3HHeJ_T0057751.1 MGP_C3HHeJ_G0026315.1 mouse_genomes_project 2 148688262 148691005 - Crnkl1 protein_coding retained_intron MGP_C3HHeJ_T0057690.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147086981 147091387 + Csrp2bp protein_coding processed_transcript MGP_C3HHeJ_T0057692.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147087070 147127312 + MGP_C3HHeJ_P0057692 Csrp2bp protein_coding protein_coding MGP_C3HHeJ_T0057693.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147091796 147111972 + MGP_C3HHeJ_P0057693 Csrp2bp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057694.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147093380 147107192 + Csrp2bp protein_coding processed_transcript MGP_C3HHeJ_T0057695.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147093845 147119343 + Csrp2bp protein_coding processed_transcript MGP_C3HHeJ_T0057696.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147106909 147112037 + Csrp2bp protein_coding retained_intron MGP_C3HHeJ_T0057697.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147106923 147112018 + Csrp2bp protein_coding processed_transcript MGP_C3HHeJ_T0057698.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147120916 147127334 + Csrp2bp protein_coding retained_intron MGP_C3HHeJ_T0057699.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147121116 147122923 + MGP_C3HHeJ_P0057699 Csrp2bp protein_coding protein_coding MGP_C3HHeJ_T0057700.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147122647 147127335 + MGP_C3HHeJ_P0057700 Csrp2bp protein_coding protein_coding MGP_C3HHeJ_T0059161.1 MGP_C3HHeJ_G0026651.1 mouse_genomes_project 2 174207639 174230182 - MGP_C3HHeJ_P0059161 Zfp217 protein_coding protein_coding MGP_C3HHeJ_T0059162.1 MGP_C3HHeJ_G0026651.1 mouse_genomes_project 2 174207642 174241633 - MGP_C3HHeJ_P0059162 Zfp217 protein_coding protein_coding MGP_C3HHeJ_T0059163.1 MGP_C3HHeJ_G0026651.1 mouse_genomes_project 2 174219328 174230182 - Zfp217 protein_coding processed_transcript MGP_C3HHeJ_T0059164.1 MGP_C3HHeJ_G0026651.1 mouse_genomes_project 2 174219614 174232912 - Zfp217 protein_coding processed_transcript MGP_C3HHeJ_T0059165.1 MGP_C3HHeJ_G0026651.1 mouse_genomes_project 2 174219714 174247040 - Zfp217 protein_coding processed_transcript MGP_C3HHeJ_T0059378.1 MGP_C3HHeJ_G0026713.1 mouse_genomes_project 2 185161288 185167851 + MGP_C3HHeJ_P0059378 Ogfr protein_coding protein_coding MGP_C3HHeJ_T0059379.1 MGP_C3HHeJ_G0026713.1 mouse_genomes_project 2 185161505 185165890 + Ogfr protein_coding retained_intron MGP_C3HHeJ_T0010300.1 MGP_C3HHeJ_G0008433.1 mouse_genomes_project 2 24337168 24337241 + Mir126a miRNA miRNA MGP_C3HHeJ_T0013469.1 MGP_C3HHeJ_G0011573.1 mouse_genomes_project 2 78158236 78158875 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054125.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33804495 33981493 + MGP_C3HHeJ_P0054125 Dab2ip protein_coding protein_coding MGP_C3HHeJ_T0054126.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33830443 33981491 + MGP_C3HHeJ_P0054126 Dab2ip protein_coding protein_coding MGP_C3HHeJ_T0054127.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33869497 33981491 + MGP_C3HHeJ_P0054127 Dab2ip protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054128.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33869676 33981491 + MGP_C3HHeJ_P0054128 Dab2ip protein_coding protein_coding MGP_C3HHeJ_T0054129.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33869676 33981495 + MGP_C3HHeJ_P0054129 Dab2ip protein_coding protein_coding MGP_C3HHeJ_T0054130.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33910939 33959296 + Dab2ip protein_coding retained_intron MGP_C3HHeJ_T0054131.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33911098 33981493 + MGP_C3HHeJ_P0054131 Dab2ip protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054132.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33911176 33960382 + Dab2ip protein_coding processed_transcript MGP_C3HHeJ_T0054133.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33942446 33981491 + MGP_C3HHeJ_P0054133 Dab2ip protein_coding protein_coding MGP_C3HHeJ_T0054134.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33942785 33979442 + MGP_C3HHeJ_P0054134 Dab2ip protein_coding protein_coding MGP_C3HHeJ_T0054135.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33960775 33981493 + MGP_C3HHeJ_P0054135 Dab2ip protein_coding protein_coding MGP_C3HHeJ_T0057250.1 MGP_C3HHeJ_G0026204.1 mouse_genomes_project 2 131333469 131346355 + MGP_C3HHeJ_P0057250 Slc20a1 protein_coding protein_coding MGP_C3HHeJ_T0057251.1 MGP_C3HHeJ_G0026204.1 mouse_genomes_project 2 131333506 131335922 + Slc20a1 protein_coding retained_intron MGP_C3HHeJ_T0057252.1 MGP_C3HHeJ_G0026204.1 mouse_genomes_project 2 131333506 131339058 + MGP_C3HHeJ_P0057252 Slc20a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0057253.1 MGP_C3HHeJ_G0026204.1 mouse_genomes_project 2 131333508 131339849 + Slc20a1 protein_coding processed_transcript MGP_C3HHeJ_T0057254.1 MGP_C3HHeJ_G0026204.1 mouse_genomes_project 2 131333508 131335920 + Slc20a1 protein_coding retained_intron MGP_C3HHeJ_T0057255.1 MGP_C3HHeJ_G0026204.1 mouse_genomes_project 2 131333849 131334559 + MGP_C3HHeJ_P0057255 Slc20a1 protein_coding protein_coding MGP_C3HHeJ_T0057256.1 MGP_C3HHeJ_G0026204.1 mouse_genomes_project 2 131334015 131346348 + MGP_C3HHeJ_P0057256 Slc20a1 protein_coding protein_coding MGP_C3HHeJ_T0057257.1 MGP_C3HHeJ_G0026204.1 mouse_genomes_project 2 131341058 131342997 + Slc20a1 protein_coding retained_intron MGP_C3HHeJ_T0057258.1 MGP_C3HHeJ_G0026204.1 mouse_genomes_project 2 131342098 131342765 + Slc20a1 protein_coding retained_intron MGP_C3HHeJ_T0007312.1 MGP_C3HHeJ_G0005992.1 mouse_genomes_project 2 171006554 171009587 - lincRNA lincRNA MGP_C3HHeJ_T0007313.1 MGP_C3HHeJ_G0005992.1 mouse_genomes_project 2 171007445 171008931 - lincRNA lincRNA MGP_C3HHeJ_T0058037.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156260961 156312740 + Tm9sf4 protein_coding processed_transcript MGP_C3HHeJ_T0058038.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156260961 156318344 + MGP_C3HHeJ_P0058038 Tm9sf4 protein_coding protein_coding MGP_C3HHeJ_T0058039.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156261199 156295518 + Tm9sf4 protein_coding processed_transcript MGP_C3HHeJ_T0058040.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156261206 156299989 + Tm9sf4 protein_coding retained_intron MGP_C3HHeJ_T0058041.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156296852 156298641 + Tm9sf4 protein_coding retained_intron MGP_C3HHeJ_T0058042.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156297379 156307924 + Tm9sf4 protein_coding processed_transcript MGP_C3HHeJ_T0058043.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156300794 156311780 + Tm9sf4 protein_coding processed_transcript MGP_C3HHeJ_T0058044.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156301983 156306078 + Tm9sf4 protein_coding processed_transcript MGP_C3HHeJ_T0058045.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156307410 156318344 + Tm9sf4 protein_coding retained_intron MGP_C3HHeJ_T0058046.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156310012 156318344 + Tm9sf4 protein_coding retained_intron MGP_C3HHeJ_T0100477.1 MGP_C3HHeJ_G0038671.1 mouse_genomes_project 2 113034492 113034623 + Gm26421 snoRNA snoRNA MGP_C3HHeJ_T0055628.1 MGP_C3HHeJ_G0025845.1 mouse_genomes_project 2 90291994 90292903 - MGP_C3HHeJ_P0055628 Olfr140 protein_coding protein_coding MGP_C3HHeJ_T0055629.1 MGP_C3HHeJ_G0025845.1 mouse_genomes_project 2 90291994 90305426 - MGP_C3HHeJ_P0055629 Olfr140 protein_coding protein_coding MGP_C3HHeJ_T0007302.1 MGP_C3HHeJ_G0005983.1 mouse_genomes_project 2 169405815 169406140 - Gm28163 lincRNA lincRNA MGP_C3HHeJ_T0056882.1 MGP_C3HHeJ_G0026112.1 mouse_genomes_project 2 123082869 123088736 - MGP_C3HHeJ_P0056882 Ell3 protein_coding protein_coding MGP_C3HHeJ_T0056883.1 MGP_C3HHeJ_G0026112.1 mouse_genomes_project 2 123082886 123086462 - MGP_C3HHeJ_P0056883 Ell3 protein_coding protein_coding MGP_C3HHeJ_T0056885.1 MGP_C3HHeJ_G0026112.1 mouse_genomes_project 2 123083839 123085012 - Ell3 protein_coding retained_intron MGP_C3HHeJ_T0054928.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600590 70653317 + MGP_C3HHeJ_P0054928 Dync1i2 protein_coding protein_coding MGP_C3HHeJ_T0054929.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600625 70653313 + MGP_C3HHeJ_P0054929 Dync1i2 protein_coding protein_coding MGP_C3HHeJ_T0054930.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600625 70653322 + MGP_C3HHeJ_P0054930 Dync1i2 protein_coding protein_coding MGP_C3HHeJ_T0054931.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600642 70653310 + MGP_C3HHeJ_P0054931 Dync1i2 protein_coding protein_coding MGP_C3HHeJ_T0054932.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600690 70637325 + Dync1i2 protein_coding processed_transcript MGP_C3HHeJ_T0054933.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600718 70653322 + MGP_C3HHeJ_P0054933 Dync1i2 protein_coding protein_coding MGP_C3HHeJ_T0054934.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600856 70653316 + MGP_C3HHeJ_P0054934 Dync1i2 protein_coding protein_coding MGP_C3HHeJ_T0054935.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600868 70652878 + MGP_C3HHeJ_P0054935 Dync1i2 protein_coding protein_coding MGP_C3HHeJ_T0054936.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600876 70653322 + MGP_C3HHeJ_P0054936 Dync1i2 protein_coding protein_coding MGP_C3HHeJ_T0054937.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600888 70620917 + Dync1i2 protein_coding retained_intron MGP_C3HHeJ_T0054938.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70625036 70650362 + Dync1i2 protein_coding retained_intron MGP_C3HHeJ_T0054939.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70650563 70653077 + Dync1i2 protein_coding retained_intron MGP_C3HHeJ_T0007329.1 MGP_C3HHeJ_G0006005.1 mouse_genomes_project 2 173299053 173301807 + 9430093N23Rik lincRNA lincRNA MGP_C3HHeJ_T0007158.1 MGP_C3HHeJ_G0005865.1 mouse_genomes_project 2 74713216 74743721 - A330043C09Rik lincRNA lincRNA MGP_C3HHeJ_T0004003.1 MGP_C3HHeJ_G0003548.1 mouse_genomes_project 2 128701774 128709727 + Gm27003 antisense antisense MGP_C3HHeJ_T0058520.1 MGP_C3HHeJ_G0026497.1 mouse_genomes_project 2 160737507 160755331 - Ghrh protein_coding processed_transcript MGP_C3HHeJ_T0058521.1 MGP_C3HHeJ_G0026497.1 mouse_genomes_project 2 160737507 160754470 - MGP_C3HHeJ_P0058521 Ghrh protein_coding protein_coding MGP_C3HHeJ_T0058522.1 MGP_C3HHeJ_G0026497.1 mouse_genomes_project 2 160737507 160745387 - MGP_C3HHeJ_P0058522 Ghrh protein_coding protein_coding MGP_C3HHeJ_T0057849.1 MGP_C3HHeJ_G0026349.1 mouse_genomes_project 2 153647280 153655939 - MGP_C3HHeJ_P0057849 Vsx1 protein_coding protein_coding MGP_C3HHeJ_T0099197.1 MGP_C3HHeJ_G0037391.1 mouse_genomes_project 2 74146991 74147098 + Gm22975 snRNA snRNA MGP_C3HHeJ_T0052924.1 MGP_C3HHeJ_G0025195.1 mouse_genomes_project 2 23314364 23317729 - MGP_C3HHeJ_P0052924 Fcna protein_coding protein_coding MGP_C3HHeJ_T0052925.1 MGP_C3HHeJ_G0025195.1 mouse_genomes_project 2 23314663 23316987 - Fcna protein_coding processed_transcript MGP_C3HHeJ_T0013332.1 MGP_C3HHeJ_G0011436.1 mouse_genomes_project 2 26642332 26642456 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003905.1 MGP_C3HHeJ_G0003482.1 mouse_genomes_project 2 59298272 59332060 + Gm13571 antisense antisense MGP_C3HHeJ_T0003906.1 MGP_C3HHeJ_G0003482.1 mouse_genomes_project 2 59316182 59324709 + Gm13571 antisense antisense MGP_C3HHeJ_T0010392.1 MGP_C3HHeJ_G0008525.1 mouse_genomes_project 2 166722762 166722828 + Mir7003 miRNA miRNA MGP_C3HHeJ_T0054534.1 MGP_C3HHeJ_G0025483.1 mouse_genomes_project 2 57519090 57595108 + Upp2 protein_coding processed_transcript MGP_C3HHeJ_T0054535.1 MGP_C3HHeJ_G0025483.1 mouse_genomes_project 2 57519110 57540081 + Upp2 protein_coding processed_transcript MGP_C3HHeJ_T0054536.1 MGP_C3HHeJ_G0025483.1 mouse_genomes_project 2 57519179 57748155 + MGP_C3HHeJ_P0054536 Upp2 protein_coding protein_coding MGP_C3HHeJ_T0054537.1 MGP_C3HHeJ_G0025483.1 mouse_genomes_project 2 57708861 57746426 + MGP_C3HHeJ_P0054537 Upp2 protein_coding protein_coding MGP_C3HHeJ_T0054538.1 MGP_C3HHeJ_G0025483.1 mouse_genomes_project 2 57709099 57745852 + MGP_C3HHeJ_P0054538 Upp2 protein_coding protein_coding MGP_C3HHeJ_T0054539.1 MGP_C3HHeJ_G0025483.1 mouse_genomes_project 2 57720524 57745486 + Upp2 protein_coding processed_transcript MGP_C3HHeJ_T0013427.1 MGP_C3HHeJ_G0011531.1 mouse_genomes_project 2 60222559 60222850 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058271.1 MGP_C3HHeJ_G0026463.1 mouse_genomes_project 2 159122395 159132380 - MGP_C3HHeJ_P0058271 Eif6 protein_coding protein_coding MGP_C3HHeJ_T0058272.1 MGP_C3HHeJ_G0026463.1 mouse_genomes_project 2 159122400 159125038 - Eif6 protein_coding processed_transcript MGP_C3HHeJ_T0058273.1 MGP_C3HHeJ_G0026463.1 mouse_genomes_project 2 159122596 159131891 - MGP_C3HHeJ_P0058273 Eif6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058274.1 MGP_C3HHeJ_G0026463.1 mouse_genomes_project 2 159125394 159131891 - Eif6 protein_coding retained_intron MGP_C3HHeJ_T0058275.1 MGP_C3HHeJ_G0026463.1 mouse_genomes_project 2 159125394 159131891 - MGP_C3HHeJ_P0058275 Eif6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058276.1 MGP_C3HHeJ_G0026463.1 mouse_genomes_project 2 159126336 159132221 - MGP_C3HHeJ_P0058276 Eif6 protein_coding protein_coding MGP_C3HHeJ_T0058277.1 MGP_C3HHeJ_G0026463.1 mouse_genomes_project 2 159130614 159132118 - MGP_C3HHeJ_P0058277 Eif6 protein_coding protein_coding MGP_C3HHeJ_T0056053.1 MGP_C3HHeJ_G0025915.1 mouse_genomes_project 2 102637143 102877255 - MGP_C3HHeJ_P0056053 Ldlrad3 protein_coding protein_coding MGP_C3HHeJ_T0056054.1 MGP_C3HHeJ_G0025915.1 mouse_genomes_project 2 102637143 102877228 - MGP_C3HHeJ_P0056054 Ldlrad3 protein_coding protein_coding MGP_C3HHeJ_T0056055.1 MGP_C3HHeJ_G0025915.1 mouse_genomes_project 2 102802176 102828598 - Ldlrad3 protein_coding processed_transcript MGP_C3HHeJ_T0098115.1 MGP_C3HHeJ_G0036327.1 mouse_genomes_project 2 170038206 170038311 + Gm22687 rRNA rRNA MGP_C3HHeJ_T0013291.1 MGP_C3HHeJ_G0011395.1 mouse_genomes_project 2 12786335 12787305 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055106.1 MGP_C3HHeJ_G0025590.1 mouse_genomes_project 2 75408571 75517402 + MGP_C3HHeJ_P0055106 Agps protein_coding protein_coding MGP_C3HHeJ_T0055107.1 MGP_C3HHeJ_G0025590.1 mouse_genomes_project 2 75408583 75480491 + MGP_C3HHeJ_P0055107 Agps protein_coding protein_coding MGP_C3HHeJ_T0055108.1 MGP_C3HHeJ_G0025590.1 mouse_genomes_project 2 75408899 75512130 + MGP_C3HHeJ_P0055108 Agps protein_coding protein_coding MGP_C3HHeJ_T0055109.1 MGP_C3HHeJ_G0025590.1 mouse_genomes_project 2 75452325 75462857 + MGP_C3HHeJ_P0055109 Agps protein_coding protein_coding MGP_C3HHeJ_T0055110.1 MGP_C3HHeJ_G0025590.1 mouse_genomes_project 2 75457876 75477074 + Agps protein_coding processed_transcript MGP_C3HHeJ_T0055111.1 MGP_C3HHeJ_G0025590.1 mouse_genomes_project 2 75479391 75512200 + MGP_C3HHeJ_P0055111 Agps protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055112.1 MGP_C3HHeJ_G0025590.1 mouse_genomes_project 2 75494446 75496945 + Agps protein_coding retained_intron MGP_C3HHeJ_T0057977.1 MGP_C3HHeJ_G0026391.1 mouse_genomes_project 2 155707923 155716187 + MGP_C3HHeJ_P0057977 Rem1 protein_coding protein_coding MGP_C3HHeJ_T0057978.1 MGP_C3HHeJ_G0026391.1 mouse_genomes_project 2 155707925 155709289 + MGP_C3HHeJ_P0057978 Rem1 protein_coding protein_coding MGP_C3HHeJ_T0057979.1 MGP_C3HHeJ_G0026391.1 mouse_genomes_project 2 155713948 155716191 + Rem1 protein_coding retained_intron MGP_C3HHeJ_T0055505.1 MGP_C3HHeJ_G0025745.1 mouse_genomes_project 2 87736388 87737451 - MGP_C3HHeJ_P0055505 Olfr1133 protein_coding protein_coding MGP_C3HHeJ_T0057343.1 MGP_C3HHeJ_G0026226.1 mouse_genomes_project 2 132743330 132744973 + Mrps26 protein_coding retained_intron MGP_C3HHeJ_T0057344.1 MGP_C3HHeJ_G0026226.1 mouse_genomes_project 2 132743330 132748058 + MGP_C3HHeJ_P0057344 Mrps26 protein_coding protein_coding MGP_C3HHeJ_T0100481.1 MGP_C3HHeJ_G0038675.1 mouse_genomes_project 2 130893792 130893918 + Gm23172 snoRNA snoRNA MGP_C3HHeJ_T0052900.1 MGP_C3HHeJ_G0025190.1 mouse_genomes_project 2 23260204 23261999 - MGP_C3HHeJ_P0052900 Phpt1 protein_coding protein_coding MGP_C3HHeJ_T0052901.1 MGP_C3HHeJ_G0025190.1 mouse_genomes_project 2 23260276 23261653 - Phpt1 protein_coding processed_transcript MGP_C3HHeJ_T0013384.1 MGP_C3HHeJ_G0011488.1 mouse_genomes_project 2 47823540 47823969 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011414.1 MGP_C3HHeJ_G0009547.1 mouse_genomes_project 2 115541949 115542267 + Gm25103 misc_RNA misc_RNA MGP_C3HHeJ_T0017707.1 MGP_C3HHeJ_G0015261.1 mouse_genomes_project 2 185350122 185360290 - Gm14343 processed_transcript processed_transcript MGP_C3HHeJ_T0057870.1 MGP_C3HHeJ_G0026354.1 mouse_genomes_project 2 153897031 153975080 - MGP_C3HHeJ_P0057870 Ninl protein_coding protein_coding MGP_C3HHeJ_T0057871.1 MGP_C3HHeJ_G0026354.1 mouse_genomes_project 2 153899552 153903578 - Ninl protein_coding processed_transcript MGP_C3HHeJ_T0057872.1 MGP_C3HHeJ_G0026354.1 mouse_genomes_project 2 153900066 153915461 - MGP_C3HHeJ_P0057872 Ninl protein_coding protein_coding MGP_C3HHeJ_T0057873.1 MGP_C3HHeJ_G0026354.1 mouse_genomes_project 2 153915159 153916593 - Ninl protein_coding retained_intron MGP_C3HHeJ_T0057874.1 MGP_C3HHeJ_G0026354.1 mouse_genomes_project 2 153921227 153934560 - MGP_C3HHeJ_P0057874 Ninl protein_coding protein_coding MGP_C3HHeJ_T0057875.1 MGP_C3HHeJ_G0026354.1 mouse_genomes_project 2 153926849 153934694 - Ninl protein_coding processed_transcript MGP_C3HHeJ_T0057876.1 MGP_C3HHeJ_G0026354.1 mouse_genomes_project 2 153926941 153975014 - Ninl protein_coding processed_transcript MGP_C3HHeJ_T0057877.1 MGP_C3HHeJ_G0026354.1 mouse_genomes_project 2 153929662 153975058 - Ninl protein_coding processed_transcript MGP_C3HHeJ_T0057878.1 MGP_C3HHeJ_G0026354.1 mouse_genomes_project 2 153937602 154007606 - MGP_C3HHeJ_P0057878 Ninl protein_coding protein_coding MGP_C3HHeJ_T0004037.1 MGP_C3HHeJ_G0003570.1 mouse_genomes_project 2 146225008 146239585 - Pcsk2os1 antisense antisense MGP_C3HHeJ_T0004038.1 MGP_C3HHeJ_G0003570.1 mouse_genomes_project 2 146227500 146235452 - Pcsk2os1 antisense antisense MGP_C3HHeJ_T0004106.1 MGP_C3HHeJ_G0003626.1 mouse_genomes_project 2 177290830 177299724 - Gm14453 antisense antisense MGP_C3HHeJ_T0017526.1 MGP_C3HHeJ_G0015165.1 mouse_genomes_project 2 24185823 24199559 + 0610009E02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017527.1 MGP_C3HHeJ_G0015165.1 mouse_genomes_project 2 24186051 24198175 + 0610009E02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017528.1 MGP_C3HHeJ_G0015165.1 mouse_genomes_project 2 24186069 24199570 + 0610009E02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0013623.1 MGP_C3HHeJ_G0011727.1 mouse_genomes_project 2 135333975 135334341 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004027.1 MGP_C3HHeJ_G0003562.1 mouse_genomes_project 2 134969598 134975993 - Gm14097 antisense antisense MGP_C3HHeJ_T0055488.1 MGP_C3HHeJ_G0025736.1 mouse_genomes_project 2 87512687 87515895 + MGP_C3HHeJ_P0055488 Olfr1126 protein_coding protein_coding MGP_C3HHeJ_T0017646.1 MGP_C3HHeJ_G0015229.1 mouse_genomes_project 2 131133090 131137960 + Gm14027 processed_transcript processed_transcript MGP_C3HHeJ_T0055441.1 MGP_C3HHeJ_G0025691.1 mouse_genomes_project 2 86104328 86105152 - MGP_C3HHeJ_P0055441 Olfr1049 protein_coding protein_coding MGP_C3HHeJ_T0011397.1 MGP_C3HHeJ_G0009530.1 mouse_genomes_project 2 31977358 31977728 + Nron misc_RNA misc_RNA MGP_C3HHeJ_T0053356.1 MGP_C3HHeJ_G0025279.1 mouse_genomes_project 2 27704154 27719755 + MGP_C3HHeJ_P0053356 Slc27a4 protein_coding protein_coding MGP_C3HHeJ_T0053357.1 MGP_C3HHeJ_G0025279.1 mouse_genomes_project 2 27708518 27713136 + Slc27a4 protein_coding processed_transcript MGP_C3HHeJ_T0013711.1 MGP_C3HHeJ_G0011815.1 mouse_genomes_project 2 169473149 169473510 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007320.1 MGP_C3HHeJ_G0005997.1 mouse_genomes_project 2 171818051 171822009 + Gm14319 lincRNA lincRNA MGP_C3HHeJ_T0013507.1 MGP_C3HHeJ_G0011611.1 mouse_genomes_project 2 87636160 87637010 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013535.1 MGP_C3HHeJ_G0011639.1 mouse_genomes_project 2 100138039 100138667 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007113.1 MGP_C3HHeJ_G0005827.1 mouse_genomes_project 2 46670721 47094158 - lincRNA lincRNA MGP_C3HHeJ_T0001062.1 MGP_C3HHeJ_G0000999.1 mouse_genomes_project 2 129348998 129349648 - TEC TEC MGP_C3HHeJ_T0001063.1 MGP_C3HHeJ_G0000999.1 mouse_genomes_project 2 129349302 129349626 - TEC TEC MGP_C3HHeJ_T0001065.1 MGP_C3HHeJ_G0001001.1 mouse_genomes_project 2 131331957 131333900 - TEC TEC MGP_C3HHeJ_T0007050.1 MGP_C3HHeJ_G0005780.1 mouse_genomes_project 2 6333438 6342497 + 1700061F12Rik lincRNA lincRNA MGP_C3HHeJ_T0057089.1 MGP_C3HHeJ_G0026163.1 mouse_genomes_project 2 128798121 128808076 - Usp50 protein_coding processed_transcript MGP_C3HHeJ_T0057090.1 MGP_C3HHeJ_G0026163.1 mouse_genomes_project 2 128798496 128821577 - MGP_C3HHeJ_P0057090 Usp50 protein_coding protein_coding MGP_C3HHeJ_T0057091.1 MGP_C3HHeJ_G0026163.1 mouse_genomes_project 2 128813927 128821570 - MGP_C3HHeJ_P0057091 Usp50 protein_coding protein_coding MGP_C3HHeJ_T0057092.1 MGP_C3HHeJ_G0026163.1 mouse_genomes_project 2 128815856 128821591 - Usp50 protein_coding retained_intron MGP_C3HHeJ_T0100487.1 MGP_C3HHeJ_G0038681.1 mouse_genomes_project 2 132451479 132451549 + Gm23650 snoRNA snoRNA MGP_C3HHeJ_T0004032.1 MGP_C3HHeJ_G0003566.1 mouse_genomes_project 2 138526527 138529667 + Gm14218 antisense antisense MGP_C3HHeJ_T0001070.1 MGP_C3HHeJ_G0001006.1 mouse_genomes_project 2 173703557 173707820 - TEC TEC MGP_C3HHeJ_T0013479.1 MGP_C3HHeJ_G0011583.1 mouse_genomes_project 2 80340406 80341014 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007276.1 MGP_C3HHeJ_G0005960.1 mouse_genomes_project 2 154787379 154789780 - 4930556L07Rik lincRNA lincRNA MGP_C3HHeJ_T0100456.1 MGP_C3HHeJ_G0038650.1 mouse_genomes_project 2 53442171 53442310 - Gm24549 snoRNA snoRNA MGP_C3HHeJ_T0097892.1 MGP_C3HHeJ_G0036104.1 mouse_genomes_project 2 20406267 20406683 - pseudogene pseudogene MGP_C3HHeJ_T0055513.1 MGP_C3HHeJ_G0025752.1 mouse_genomes_project 2 87846412 87847348 + MGP_C3HHeJ_P0055513 Olfr1140 protein_coding protein_coding MGP_C3HHeJ_T0101887.1 MGP_C3HHeJ_G0039852.1 mouse_genomes_project 2 84898617 84901159 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013606.1 MGP_C3HHeJ_G0011710.1 mouse_genomes_project 2 131899069 131900054 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007207.1 MGP_C3HHeJ_G0005905.1 mouse_genomes_project 2 109967896 109970671 + Gm13923 lincRNA lincRNA MGP_C3HHeJ_T0001034.1 MGP_C3HHeJ_G0000971.1 mouse_genomes_project 2 34016420 34019435 - TEC TEC MGP_C3HHeJ_T0017609.1 MGP_C3HHeJ_G0015216.1 mouse_genomes_project 2 114663435 114673319 + Gm13965 processed_transcript processed_transcript MGP_C3HHeJ_T0007045.1 MGP_C3HHeJ_G0005776.1 mouse_genomes_project 2 3516149 3522691 + Gm13391 lincRNA lincRNA MGP_C3HHeJ_T0007046.1 MGP_C3HHeJ_G0005776.1 mouse_genomes_project 2 3516420 3517261 + Gm13391 lincRNA lincRNA MGP_C3HHeJ_T0055582.1 MGP_C3HHeJ_G0025815.1 mouse_genomes_project 2 89432124 89433143 - MGP_C3HHeJ_P0055582 Olfr1229 protein_coding protein_coding MGP_C3HHeJ_T0055583.1 MGP_C3HHeJ_G0025815.1 mouse_genomes_project 2 89432181 89438028 - MGP_C3HHeJ_P0055583 Olfr1229 protein_coding protein_coding MGP_C3HHeJ_T0100479.1 MGP_C3HHeJ_G0038673.1 mouse_genomes_project 2 122632432 122632646 + Gm22865 snoRNA snoRNA MGP_C3HHeJ_T0099220.1 MGP_C3HHeJ_G0037414.1 mouse_genomes_project 2 138410321 138410422 - Gm26227 snRNA snRNA MGP_C3HHeJ_T0011431.1 MGP_C3HHeJ_G0009564.1 mouse_genomes_project 2 178623597 178623722 + Gm27849 misc_RNA misc_RNA MGP_C3HHeJ_T0057561.1 MGP_C3HHeJ_G0026273.1 mouse_genomes_project 2 137138933 137842547 + MGP_C3HHeJ_P0057561 Plcb1 protein_coding protein_coding MGP_C3HHeJ_T0057562.1 MGP_C3HHeJ_G0026273.1 mouse_genomes_project 2 137139025 137842558 + MGP_C3HHeJ_P0057562 Plcb1 protein_coding protein_coding MGP_C3HHeJ_T0057563.1 MGP_C3HHeJ_G0026273.1 mouse_genomes_project 2 137139041 137348599 + Plcb1 protein_coding retained_intron MGP_C3HHeJ_T0057564.1 MGP_C3HHeJ_G0026273.1 mouse_genomes_project 2 137139095 137621568 + Plcb1 protein_coding retained_intron MGP_C3HHeJ_T0057565.1 MGP_C3HHeJ_G0026273.1 mouse_genomes_project 2 137139396 137766915 + MGP_C3HHeJ_P0057565 Plcb1 protein_coding protein_coding MGP_C3HHeJ_T0057566.1 MGP_C3HHeJ_G0026273.1 mouse_genomes_project 2 137587992 137629168 + Plcb1 protein_coding processed_transcript MGP_C3HHeJ_T0057567.1 MGP_C3HHeJ_G0026273.1 mouse_genomes_project 2 137588039 137629173 + MGP_C3HHeJ_P0057567 Plcb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057568.1 MGP_C3HHeJ_G0026273.1 mouse_genomes_project 2 137615350 137622457 + Plcb1 protein_coding processed_transcript MGP_C3HHeJ_T0056035.1 MGP_C3HHeJ_G0025911.1 mouse_genomes_project 2 102305885 102317104 - MGP_C3HHeJ_P0056035 Rag1 protein_coding protein_coding MGP_C3HHeJ_T0053168.1 MGP_C3HHeJ_G0025243.1 mouse_genomes_project 2 24833711 24863955 + MGP_C3HHeJ_P0053168 Adamtsl2 protein_coding protein_coding MGP_C3HHeJ_T0053169.1 MGP_C3HHeJ_G0025243.1 mouse_genomes_project 2 24852269 24863949 + Adamtsl2 protein_coding retained_intron MGP_C3HHeJ_T0053170.1 MGP_C3HHeJ_G0025243.1 mouse_genomes_project 2 24853016 24853632 + Adamtsl2 protein_coding processed_transcript MGP_C3HHeJ_T0053171.1 MGP_C3HHeJ_G0025243.1 mouse_genomes_project 2 24858759 24862380 + Adamtsl2 protein_coding retained_intron MGP_C3HHeJ_T0053172.1 MGP_C3HHeJ_G0025243.1 mouse_genomes_project 2 24859636 24863955 + Adamtsl2 protein_coding retained_intron MGP_C3HHeJ_T0053421.1 MGP_C3HHeJ_G0025286.1 mouse_genomes_project 2 27983682 28000279 + MGP_C3HHeJ_P0053421 Set protein_coding protein_coding MGP_C3HHeJ_T0053422.1 MGP_C3HHeJ_G0025286.1 mouse_genomes_project 2 27989516 27999533 + MGP_C3HHeJ_P0053422 Set protein_coding protein_coding MGP_C3HHeJ_T0053423.1 MGP_C3HHeJ_G0025286.1 mouse_genomes_project 2 27990363 28001081 + Set protein_coding processed_transcript MGP_C3HHeJ_T0053424.1 MGP_C3HHeJ_G0025286.1 mouse_genomes_project 2 27996431 28001414 + MGP_C3HHeJ_P0053424 Set protein_coding protein_coding MGP_C3HHeJ_T0053425.1 MGP_C3HHeJ_G0025286.1 mouse_genomes_project 2 27997168 27999606 + Set protein_coding processed_transcript MGP_C3HHeJ_T0013612.1 MGP_C3HHeJ_G0011716.1 mouse_genomes_project 2 133196438 133196907 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055627.1 MGP_C3HHeJ_G0025844.1 mouse_genomes_project 2 90258891 90259818 - MGP_C3HHeJ_P0055627 Olfr1264 protein_coding protein_coding MGP_C3HHeJ_T0056170.1 MGP_C3HHeJ_G0025938.1 mouse_genomes_project 2 105182551 105253307 - MGP_C3HHeJ_P0056170 Hipk3 protein_coding protein_coding MGP_C3HHeJ_T0056171.1 MGP_C3HHeJ_G0025938.1 mouse_genomes_project 2 105185854 105252551 - MGP_C3HHeJ_P0056171 Hipk3 protein_coding protein_coding MGP_C3HHeJ_T0056172.1 MGP_C3HHeJ_G0025938.1 mouse_genomes_project 2 105185928 105252815 - MGP_C3HHeJ_P0056172 Hipk3 protein_coding protein_coding MGP_C3HHeJ_T0056173.1 MGP_C3HHeJ_G0025938.1 mouse_genomes_project 2 105189732 105195132 - Hipk3 protein_coding processed_transcript MGP_C3HHeJ_T0058510.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160681018 160691968 + Rpn2 protein_coding processed_transcript MGP_C3HHeJ_T0058511.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160681060 160734324 + MGP_C3HHeJ_P0058511 Rpn2 protein_coding protein_coding MGP_C3HHeJ_T0058512.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160681147 160734324 + MGP_C3HHeJ_P0058512 Rpn2 protein_coding protein_coding MGP_C3HHeJ_T0058513.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160681427 160734061 + Rpn2 protein_coding processed_transcript MGP_C3HHeJ_T0058514.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160681570 160693118 + Rpn2 protein_coding processed_transcript MGP_C3HHeJ_T0058515.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160685989 160733740 + Rpn2 protein_coding processed_transcript MGP_C3HHeJ_T0058516.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160697248 160697760 + Rpn2 protein_coding processed_transcript MGP_C3HHeJ_T0058517.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160718015 160719673 + Rpn2 protein_coding processed_transcript MGP_C3HHeJ_T0058518.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160719641 160730478 + Rpn2 protein_coding retained_intron MGP_C3HHeJ_T0058519.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160727814 160730167 + Rpn2 protein_coding retained_intron MGP_C3HHeJ_T0099211.1 MGP_C3HHeJ_G0037405.1 mouse_genomes_project 2 124112425 124112577 - Gm24409 snRNA snRNA MGP_C3HHeJ_T0059358.1 MGP_C3HHeJ_G0026707.1 mouse_genomes_project 2 184807612 184824388 - MGP_C3HHeJ_P0059358 Cables2 protein_coding protein_coding MGP_C3HHeJ_T0059359.1 MGP_C3HHeJ_G0026707.1 mouse_genomes_project 2 184807778 184824355 - Cables2 protein_coding retained_intron MGP_C3HHeJ_T0059360.1 MGP_C3HHeJ_G0026707.1 mouse_genomes_project 2 184809984 184811349 - Cables2 protein_coding retained_intron MGP_C3HHeJ_T0059361.1 MGP_C3HHeJ_G0026707.1 mouse_genomes_project 2 184811715 184824388 - Cables2 protein_coding retained_intron MGP_C3HHeJ_T0059362.1 MGP_C3HHeJ_G0026707.1 mouse_genomes_project 2 184812438 184824338 - Cables2 protein_coding retained_intron MGP_C3HHeJ_T0010403.1 MGP_C3HHeJ_G0008536.1 mouse_genomes_project 2 178575767 178575835 + Gm27591 miRNA miRNA MGP_C3HHeJ_T0013668.1 MGP_C3HHeJ_G0011772.1 mouse_genomes_project 2 153908995 153909478 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010364.1 MGP_C3HHeJ_G0008497.1 mouse_genomes_project 2 121589863 121589926 + Mir7665 miRNA miRNA MGP_C3HHeJ_T0056441.1 MGP_C3HHeJ_G0026030.1 mouse_genomes_project 2 118687945 118754051 - MGP_C3HHeJ_P0056441 Rasgrp1 protein_coding protein_coding MGP_C3HHeJ_T0056442.1 MGP_C3HHeJ_G0026030.1 mouse_genomes_project 2 118687946 118753927 - MGP_C3HHeJ_P0056442 Rasgrp1 protein_coding protein_coding MGP_C3HHeJ_T0056443.1 MGP_C3HHeJ_G0026030.1 mouse_genomes_project 2 118690496 118753759 - MGP_C3HHeJ_P0056443 Rasgrp1 protein_coding protein_coding MGP_C3HHeJ_T0056444.1 MGP_C3HHeJ_G0026030.1 mouse_genomes_project 2 118690496 118753759 - MGP_C3HHeJ_P0056444 Rasgrp1 protein_coding protein_coding MGP_C3HHeJ_T0056445.1 MGP_C3HHeJ_G0026030.1 mouse_genomes_project 2 118690496 118753759 - MGP_C3HHeJ_P0056445 Rasgrp1 protein_coding protein_coding MGP_C3HHeJ_T0056446.1 MGP_C3HHeJ_G0026030.1 mouse_genomes_project 2 118690496 118753759 - MGP_C3HHeJ_P0056446 Rasgrp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056447.1 MGP_C3HHeJ_G0026030.1 mouse_genomes_project 2 118708089 118753975 - Rasgrp1 protein_coding retained_intron MGP_C3HHeJ_T0013503.1 MGP_C3HHeJ_G0011607.1 mouse_genomes_project 2 87385751 87386624 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101900.1 MGP_C3HHeJ_G0039865.1 mouse_genomes_project 2 86421454 86422991 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013690.1 MGP_C3HHeJ_G0011794.1 mouse_genomes_project 2 159958885 159959525 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055007.1 MGP_C3HHeJ_G0025565.1 mouse_genomes_project 2 72587187 72716394 - MGP_C3HHeJ_P0055007 Ola1 protein_coding protein_coding MGP_C3HHeJ_T0055008.1 MGP_C3HHeJ_G0025565.1 mouse_genomes_project 2 72587586 72716373 - Ola1 protein_coding processed_transcript MGP_C3HHeJ_T0055009.1 MGP_C3HHeJ_G0025565.1 mouse_genomes_project 2 72587588 72714907 - MGP_C3HHeJ_P0055009 Ola1 protein_coding protein_coding MGP_C3HHeJ_T0055010.1 MGP_C3HHeJ_G0025565.1 mouse_genomes_project 2 72635875 72716280 - MGP_C3HHeJ_P0055010 Ola1 protein_coding protein_coding MGP_C3HHeJ_T0055011.1 MGP_C3HHeJ_G0025565.1 mouse_genomes_project 2 72699972 72716359 - Ola1 protein_coding processed_transcript MGP_C3HHeJ_T0055012.1 MGP_C3HHeJ_G0025565.1 mouse_genomes_project 2 72714817 72720871 - Ola1 protein_coding processed_transcript MGP_C3HHeJ_T0013718.1 MGP_C3HHeJ_G0011822.1 mouse_genomes_project 2 171202125 171202484 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013682.1 MGP_C3HHeJ_G0011786.1 mouse_genomes_project 2 158764367 158764693 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013285.1 MGP_C3HHeJ_G0011389.1 mouse_genomes_project 2 12055983 12056700 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010252.1 MGP_C3HHeJ_G0008385.1 mouse_genomes_project 2 7690211 7690305 + Mir466f-1 miRNA miRNA MGP_C3HHeJ_T0056582.1 MGP_C3HHeJ_G0026066.1 mouse_genomes_project 2 121152831 121161649 - Oip5 protein_coding retained_intron MGP_C3HHeJ_T0056583.1 MGP_C3HHeJ_G0026066.1 mouse_genomes_project 2 121153276 121161649 - MGP_C3HHeJ_P0056583 Oip5 protein_coding protein_coding MGP_C3HHeJ_T0053278.1 MGP_C3HHeJ_G0025265.1 mouse_genomes_project 2 26528190 26647602 + MGP_C3HHeJ_P0053278 Ak8 protein_coding protein_coding MGP_C3HHeJ_T0053279.1 MGP_C3HHeJ_G0025265.1 mouse_genomes_project 2 26528233 26564183 + Ak8 protein_coding processed_transcript MGP_C3HHeJ_T0053280.1 MGP_C3HHeJ_G0025265.1 mouse_genomes_project 2 26572994 26590896 + Ak8 protein_coding processed_transcript MGP_C3HHeJ_T0052022.1 MGP_C3HHeJ_G0025042.1 mouse_genomes_project 2 458712 489849 - MGP_C3HHeJ_P0052022 protein_coding protein_coding MGP_C3HHeJ_T0052023.1 MGP_C3HHeJ_G0025042.1 mouse_genomes_project 2 458838 460025 - protein_coding retained_intron MGP_C3HHeJ_T0052024.1 MGP_C3HHeJ_G0025042.1 mouse_genomes_project 2 460820 461916 - protein_coding retained_intron MGP_C3HHeJ_T0052025.1 MGP_C3HHeJ_G0025042.1 mouse_genomes_project 2 466078 470690 - protein_coding retained_intron MGP_C3HHeJ_T0052026.1 MGP_C3HHeJ_G0025042.1 mouse_genomes_project 2 473086 480046 - protein_coding retained_intron MGP_C3HHeJ_T0052027.1 MGP_C3HHeJ_G0025042.1 mouse_genomes_project 2 481561 489792 - MGP_C3HHeJ_P0052027 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052028.1 MGP_C3HHeJ_G0025042.1 mouse_genomes_project 2 483443 489825 - MGP_C3HHeJ_P0052028 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052029.1 MGP_C3HHeJ_G0025042.1 mouse_genomes_project 2 487922 489778 - protein_coding retained_intron MGP_C3HHeJ_T0007149.1 MGP_C3HHeJ_G0005858.1 mouse_genomes_project 2 73672129 73687878 + Gm13667 lincRNA lincRNA MGP_C3HHeJ_T0013656.1 MGP_C3HHeJ_G0011760.1 mouse_genomes_project 2 150097691 150098667 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052738.1 MGP_C3HHeJ_G0025163.1 mouse_genomes_project 2 22888325 22889496 - MGP_C3HHeJ_P0052738 Cysrt1 protein_coding protein_coding MGP_C3HHeJ_T0052739.1 MGP_C3HHeJ_G0025163.1 mouse_genomes_project 2 22888496 22889405 - MGP_C3HHeJ_P0052739 Cysrt1 protein_coding protein_coding MGP_C3HHeJ_T0052740.1 MGP_C3HHeJ_G0025163.1 mouse_genomes_project 2 22888664 22891960 - MGP_C3HHeJ_P0052740 Cysrt1 protein_coding protein_coding MGP_C3HHeJ_T0056642.1 MGP_C3HHeJ_G0026078.1 mouse_genomes_project 2 121605686 121614221 + protein_coding retained_intron MGP_C3HHeJ_T0056643.1 MGP_C3HHeJ_G0026078.1 mouse_genomes_project 2 121605702 121616415 + protein_coding retained_intron MGP_C3HHeJ_T0056644.1 MGP_C3HHeJ_G0026078.1 mouse_genomes_project 2 121605702 121614220 + MGP_C3HHeJ_P0056644 protein_coding protein_coding MGP_C3HHeJ_T0056645.1 MGP_C3HHeJ_G0026078.1 mouse_genomes_project 2 121606812 121608387 + protein_coding retained_intron MGP_C3HHeJ_T0056646.1 MGP_C3HHeJ_G0026078.1 mouse_genomes_project 2 121611124 121612704 + protein_coding retained_intron MGP_C3HHeJ_T0056647.1 MGP_C3HHeJ_G0026078.1 mouse_genomes_project 2 121613225 121613946 + protein_coding retained_intron MGP_C3HHeJ_T0052040.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 993790 1153142 + Frmd4a protein_coding processed_transcript MGP_C3HHeJ_T0052041.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 993807 997978 + Frmd4a protein_coding retained_intron MGP_C3HHeJ_T0052042.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 993817 1611740 + MGP_C3HHeJ_P0052042 Frmd4a protein_coding protein_coding MGP_C3HHeJ_T0052043.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1139092 1157561 + Frmd4a protein_coding processed_transcript MGP_C3HHeJ_T0052044.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1139101 1611641 + MGP_C3HHeJ_P0052044 Frmd4a protein_coding protein_coding MGP_C3HHeJ_T0052045.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1285363 1570193 + MGP_C3HHeJ_P0052045 Frmd4a protein_coding protein_coding MGP_C3HHeJ_T0052046.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1285730 1536627 + Frmd4a protein_coding retained_intron MGP_C3HHeJ_T0052047.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1285848 1557977 + MGP_C3HHeJ_P0052047 Frmd4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052048.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1316243 1592359 + MGP_C3HHeJ_P0052048 Frmd4a protein_coding protein_coding MGP_C3HHeJ_T0052049.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1381610 1527528 + MGP_C3HHeJ_P0052049 Frmd4a protein_coding protein_coding MGP_C3HHeJ_T0052050.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1381612 1424090 + Frmd4a protein_coding retained_intron MGP_C3HHeJ_T0052051.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1392918 1611742 + MGP_C3HHeJ_P0052051 Frmd4a protein_coding protein_coding MGP_C3HHeJ_T0052052.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1393380 1421942 + Frmd4a protein_coding retained_intron MGP_C3HHeJ_T0052053.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1393414 1535465 + Frmd4a protein_coding retained_intron MGP_C3HHeJ_T0052054.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1413470 1611744 + MGP_C3HHeJ_P0052054 Frmd4a protein_coding protein_coding MGP_C3HHeJ_T0052055.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1469556 1494498 + Frmd4a protein_coding retained_intron MGP_C3HHeJ_T0052056.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1557470 1595702 + Frmd4a protein_coding retained_intron MGP_C3HHeJ_T0052057.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1557491 1585932 + Frmd4a protein_coding retained_intron MGP_C3HHeJ_T0052058.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1563903 1592395 + MGP_C3HHeJ_P0052058 Frmd4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007209.1 MGP_C3HHeJ_G0005907.1 mouse_genomes_project 2 115544002 115545265 - Gm29234 lincRNA lincRNA MGP_C3HHeJ_T0056536.1 MGP_C3HHeJ_G0026052.1 mouse_genomes_project 2 120652546 120672828 - MGP_C3HHeJ_P0056536 Rmdn3 protein_coding protein_coding MGP_C3HHeJ_T0056537.1 MGP_C3HHeJ_G0026052.1 mouse_genomes_project 2 120654600 120656421 - Rmdn3 protein_coding retained_intron MGP_C3HHeJ_T0056538.1 MGP_C3HHeJ_G0026052.1 mouse_genomes_project 2 120657963 120663243 - Rmdn3 protein_coding retained_intron MGP_C3HHeJ_T0056539.1 MGP_C3HHeJ_G0026052.1 mouse_genomes_project 2 120661964 120663252 - Rmdn3 protein_coding retained_intron MGP_C3HHeJ_T0056540.1 MGP_C3HHeJ_G0026052.1 mouse_genomes_project 2 120669831 120672618 - MGP_C3HHeJ_P0056540 Rmdn3 protein_coding protein_coding MGP_C3HHeJ_T0056541.1 MGP_C3HHeJ_G0026052.1 mouse_genomes_project 2 120669861 120672742 - MGP_C3HHeJ_P0056541 Rmdn3 protein_coding protein_coding MGP_C3HHeJ_T0056542.1 MGP_C3HHeJ_G0026052.1 mouse_genomes_project 2 120669871 120672758 - MGP_C3HHeJ_P0056542 Rmdn3 protein_coding protein_coding MGP_C3HHeJ_T0053219.1 MGP_C3HHeJ_G0025253.1 mouse_genomes_project 2 25982400 26004449 + Olfm1 protein_coding processed_transcript MGP_C3HHeJ_T0053220.1 MGP_C3HHeJ_G0025253.1 mouse_genomes_project 2 25982400 26020330 + MGP_C3HHeJ_P0053220 Olfm1 protein_coding protein_coding MGP_C3HHeJ_T0053221.1 MGP_C3HHeJ_G0025253.1 mouse_genomes_project 2 25982501 26020604 + MGP_C3HHeJ_P0053221 Olfm1 protein_coding protein_coding MGP_C3HHeJ_T0053222.1 MGP_C3HHeJ_G0025253.1 mouse_genomes_project 2 25994967 26004449 + MGP_C3HHeJ_P0053222 Olfm1 protein_coding protein_coding MGP_C3HHeJ_T0053223.1 MGP_C3HHeJ_G0025253.1 mouse_genomes_project 2 25994967 26020604 + MGP_C3HHeJ_P0053223 Olfm1 protein_coding protein_coding MGP_C3HHeJ_T0057766.1 MGP_C3HHeJ_G0026317.1 mouse_genomes_project 2 148974316 148977398 + MGP_C3HHeJ_P0057766 Insm1 protein_coding protein_coding MGP_C3HHeJ_T0055444.1 MGP_C3HHeJ_G0025694.1 mouse_genomes_project 2 86191104 86192046 - MGP_C3HHeJ_P0055444 Olfr1053 protein_coding protein_coding MGP_C3HHeJ_T0058524.1 MGP_C3HHeJ_G0026499.1 mouse_genomes_project 2 160832715 160887821 + MGP_C3HHeJ_P0058524 Src protein_coding protein_coding MGP_C3HHeJ_T0058525.1 MGP_C3HHeJ_G0026499.1 mouse_genomes_project 2 160838969 160870641 + Src protein_coding processed_transcript MGP_C3HHeJ_T0058526.1 MGP_C3HHeJ_G0026499.1 mouse_genomes_project 2 160839133 160887848 + MGP_C3HHeJ_P0058526 Src protein_coding protein_coding MGP_C3HHeJ_T0058527.1 MGP_C3HHeJ_G0026499.1 mouse_genomes_project 2 160839146 160887824 + MGP_C3HHeJ_P0058527 Src protein_coding protein_coding MGP_C3HHeJ_T0058528.1 MGP_C3HHeJ_G0026499.1 mouse_genomes_project 2 160839245 160873814 + Src protein_coding processed_transcript MGP_C3HHeJ_T0058529.1 MGP_C3HHeJ_G0026499.1 mouse_genomes_project 2 160839245 160870540 + Src protein_coding processed_transcript MGP_C3HHeJ_T0058530.1 MGP_C3HHeJ_G0026499.1 mouse_genomes_project 2 160870604 160887824 + MGP_C3HHeJ_P0058530 Src protein_coding protein_coding MGP_C3HHeJ_T0058531.1 MGP_C3HHeJ_G0026499.1 mouse_genomes_project 2 160872307 160885590 + MGP_C3HHeJ_P0058531 Src protein_coding protein_coding MGP_C3HHeJ_T0054813.1 MGP_C3HHeJ_G0025529.1 mouse_genomes_project 2 68544215 68655586 - MGP_C3HHeJ_P0054813 Abcb11 protein_coding protein_coding MGP_C3HHeJ_T0054814.1 MGP_C3HHeJ_G0025529.1 mouse_genomes_project 2 68544222 68655588 - MGP_C3HHeJ_P0054814 Abcb11 protein_coding protein_coding MGP_C3HHeJ_T0054815.1 MGP_C3HHeJ_G0025529.1 mouse_genomes_project 2 68544222 68655572 - MGP_C3HHeJ_P0054815 Abcb11 protein_coding protein_coding MGP_C3HHeJ_T0054816.1 MGP_C3HHeJ_G0025529.1 mouse_genomes_project 2 68544243 68545012 - Abcb11 protein_coding processed_transcript MGP_C3HHeJ_T0057964.1 MGP_C3HHeJ_G0026379.1 mouse_genomes_project 2 155529749 155537115 - MGP_C3HHeJ_P0057964 Defb23 protein_coding protein_coding MGP_C3HHeJ_T0017661.1 MGP_C3HHeJ_G0015239.1 mouse_genomes_project 2 153572813 153576835 + Gm14123 processed_transcript processed_transcript MGP_C3HHeJ_T0013493.1 MGP_C3HHeJ_G0011597.1 mouse_genomes_project 2 85015677 85015898 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001022.1 MGP_C3HHeJ_G0000959.1 mouse_genomes_project 2 12437397 12439781 - TEC TEC MGP_C3HHeJ_T0007279.1 MGP_C3HHeJ_G0005963.1 mouse_genomes_project 2 157951616 157952916 - Gm14216 lincRNA lincRNA MGP_C3HHeJ_T0007280.1 MGP_C3HHeJ_G0005963.1 mouse_genomes_project 2 157951634 157971001 - Gm14216 lincRNA lincRNA MGP_C3HHeJ_T0055341.1 MGP_C3HHeJ_G0025637.1 mouse_genomes_project 2 84467277 84473501 - MGP_C3HHeJ_P0055341 Clp1 protein_coding protein_coding MGP_C3HHeJ_T0055342.1 MGP_C3HHeJ_G0025637.1 mouse_genomes_project 2 84468036 84473609 - MGP_C3HHeJ_P0055342 Clp1 protein_coding protein_coding MGP_C3HHeJ_T0055343.1 MGP_C3HHeJ_G0025637.1 mouse_genomes_project 2 84468038 84473535 - Clp1 protein_coding processed_transcript MGP_C3HHeJ_T0013352.1 MGP_C3HHeJ_G0011456.1 mouse_genomes_project 2 35326588 35326997 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059243.1 MGP_C3HHeJ_G0026681.1 mouse_genomes_project 2 178433365 178446087 + MGP_C3HHeJ_P0059243 Npepl1 protein_coding protein_coding MGP_C3HHeJ_T0059244.1 MGP_C3HHeJ_G0026681.1 mouse_genomes_project 2 178434170 178443399 + MGP_C3HHeJ_P0059244 Npepl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059245.1 MGP_C3HHeJ_G0026681.1 mouse_genomes_project 2 178434196 178445719 + Npepl1 protein_coding retained_intron MGP_C3HHeJ_T0059246.1 MGP_C3HHeJ_G0026681.1 mouse_genomes_project 2 178434589 178439120 + Npepl1 protein_coding retained_intron MGP_C3HHeJ_T0100472.1 MGP_C3HHeJ_G0038666.1 mouse_genomes_project 2 97804260 97804389 - Gm23317 snoRNA snoRNA MGP_C3HHeJ_T0100444.1 MGP_C3HHeJ_G0038638.1 mouse_genomes_project 2 30947051 30947179 + Gm24165 snoRNA snoRNA MGP_C3HHeJ_T0058805.1 MGP_C3HHeJ_G0026573.1 mouse_genomes_project 2 168223059 168233637 + MGP_C3HHeJ_P0058805 Pigt protein_coding protein_coding MGP_C3HHeJ_T0058806.1 MGP_C3HHeJ_G0026573.1 mouse_genomes_project 2 168223074 168228655 + MGP_C3HHeJ_P0058806 Pigt protein_coding protein_coding MGP_C3HHeJ_T0058807.1 MGP_C3HHeJ_G0026573.1 mouse_genomes_project 2 168223085 168228931 + Pigt protein_coding retained_intron MGP_C3HHeJ_T0058808.1 MGP_C3HHeJ_G0026573.1 mouse_genomes_project 2 168223100 168233637 + MGP_C3HHeJ_P0058808 Pigt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058809.1 MGP_C3HHeJ_G0026573.1 mouse_genomes_project 2 168225456 168227146 + Pigt protein_coding retained_intron MGP_C3HHeJ_T0007248.1 MGP_C3HHeJ_G0005937.1 mouse_genomes_project 2 134856231 134920862 + AU019990 lincRNA lincRNA MGP_C3HHeJ_T0007249.1 MGP_C3HHeJ_G0005937.1 mouse_genomes_project 2 134856231 134918054 + AU019990 lincRNA lincRNA MGP_C3HHeJ_T0054529.1 MGP_C3HHeJ_G0025481.1 mouse_genomes_project 2 57325206 57463561 - Acvr1 protein_coding processed_transcript MGP_C3HHeJ_T0054530.1 MGP_C3HHeJ_G0025481.1 mouse_genomes_project 2 57390203 57475549 - MGP_C3HHeJ_P0054530 Acvr1 protein_coding protein_coding MGP_C3HHeJ_T0054531.1 MGP_C3HHeJ_G0025481.1 mouse_genomes_project 2 57390212 57518619 - MGP_C3HHeJ_P0054531 Acvr1 protein_coding protein_coding MGP_C3HHeJ_T0054533.1 MGP_C3HHeJ_G0025481.1 mouse_genomes_project 2 57423906 57488766 - MGP_C3HHeJ_P0054533 Acvr1 protein_coding protein_coding MGP_C3HHeJ_T0057346.1 MGP_C3HHeJ_G0026228.1 mouse_genomes_project 2 132760918 132762853 - MGP_C3HHeJ_P0057346 Avp protein_coding protein_coding MGP_C3HHeJ_T0056157.1 MGP_C3HHeJ_G0025933.1 mouse_genomes_project 2 104790588 104790873 - MGP_C3HHeJ_P0056157 Gm10799 protein_coding protein_coding MGP_C3HHeJ_T0057800.1 MGP_C3HHeJ_G0026328.1 mouse_genomes_project 2 151537998 151541425 + MGP_C3HHeJ_P0057800 Nxt1 protein_coding protein_coding MGP_C3HHeJ_T0057801.1 MGP_C3HHeJ_G0026328.1 mouse_genomes_project 2 151538023 151541425 + MGP_C3HHeJ_P0057801 Nxt1 protein_coding protein_coding MGP_C3HHeJ_T0001047.1 MGP_C3HHeJ_G0000984.1 mouse_genomes_project 2 38077529 38089948 + TEC TEC MGP_C3HHeJ_T0004059.1 MGP_C3HHeJ_G0003588.1 mouse_genomes_project 2 156803377 156804974 - Dnmt3bos antisense antisense MGP_C3HHeJ_T0013560.1 MGP_C3HHeJ_G0011664.1 mouse_genomes_project 2 107794241 107794845 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056790.1 MGP_C3HHeJ_G0026101.1 mouse_genomes_project 2 122758871 122771935 - MGP_C3HHeJ_P0056790 Lcmt2 protein_coding protein_coding MGP_C3HHeJ_T0056791.1 MGP_C3HHeJ_G0026101.1 mouse_genomes_project 2 122769154 122772210 - MGP_C3HHeJ_P0056791 Lcmt2 protein_coding protein_coding MGP_C3HHeJ_T0013344.1 MGP_C3HHeJ_G0011448.1 mouse_genomes_project 2 32629554 32629810 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101911.1 MGP_C3HHeJ_G0039876.1 mouse_genomes_project 2 88097084 88097976 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013282.1 MGP_C3HHeJ_G0011386.1 mouse_genomes_project 2 8667083 8668080 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052346.1 MGP_C3HHeJ_G0025093.1 mouse_genomes_project 2 11432628 11496403 + MGP_C3HHeJ_P0052346 Stam protein_coding protein_coding MGP_C3HHeJ_T0052347.1 MGP_C3HHeJ_G0025093.1 mouse_genomes_project 2 11432638 11474658 + Stam protein_coding processed_transcript MGP_C3HHeJ_T0052348.1 MGP_C3HHeJ_G0025093.1 mouse_genomes_project 2 11432719 11491134 + MGP_C3HHeJ_P0052348 Stam protein_coding protein_coding MGP_C3HHeJ_T0052349.1 MGP_C3HHeJ_G0025093.1 mouse_genomes_project 2 11432752 11494309 + MGP_C3HHeJ_P0052349 Stam protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052350.1 MGP_C3HHeJ_G0025093.1 mouse_genomes_project 2 11432957 11475118 + MGP_C3HHeJ_P0052350 Stam protein_coding protein_coding MGP_C3HHeJ_T0052351.1 MGP_C3HHeJ_G0025093.1 mouse_genomes_project 2 11474381 11475213 + Stam protein_coding retained_intron MGP_C3HHeJ_T0052352.1 MGP_C3HHeJ_G0025093.1 mouse_genomes_project 2 11475091 11477435 + Stam protein_coding processed_transcript MGP_C3HHeJ_T0052353.1 MGP_C3HHeJ_G0025093.1 mouse_genomes_project 2 11476888 11485951 + Stam protein_coding retained_intron MGP_C3HHeJ_T0052354.1 MGP_C3HHeJ_G0025093.1 mouse_genomes_project 2 11480166 11485893 + Stam protein_coding retained_intron MGP_C3HHeJ_T0013618.1 MGP_C3HHeJ_G0011722.1 mouse_genomes_project 2 134343304 134344294 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013698.1 MGP_C3HHeJ_G0011802.1 mouse_genomes_project 2 161885047 161885358 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056325.1 MGP_C3HHeJ_G0025985.1 mouse_genomes_project 2 112701277 112702216 - MGP_C3HHeJ_P0056325 protein_coding protein_coding MGP_C3HHeJ_T0013565.1 MGP_C3HHeJ_G0011669.1 mouse_genomes_project 2 109508334 109508594 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054432.1 MGP_C3HHeJ_G0025461.1 mouse_genomes_project 2 50664383 50676990 - MGP_C3HHeJ_P0054432 Rbm43 protein_coding protein_coding MGP_C3HHeJ_T0054433.1 MGP_C3HHeJ_G0025461.1 mouse_genomes_project 2 50664383 50677146 - MGP_C3HHeJ_P0054433 Rbm43 protein_coding protein_coding MGP_C3HHeJ_T0054434.1 MGP_C3HHeJ_G0025461.1 mouse_genomes_project 2 50664386 50676627 - MGP_C3HHeJ_P0054434 Rbm43 protein_coding protein_coding MGP_C3HHeJ_T0054435.1 MGP_C3HHeJ_G0025461.1 mouse_genomes_project 2 50665317 50666947 - Rbm43 protein_coding processed_transcript MGP_C3HHeJ_T0054436.1 MGP_C3HHeJ_G0025461.1 mouse_genomes_project 2 50665582 50673691 - Rbm43 protein_coding processed_transcript MGP_C3HHeJ_T0054437.1 MGP_C3HHeJ_G0025461.1 mouse_genomes_project 2 50665801 50676657 - Rbm43 protein_coding processed_transcript MGP_C3HHeJ_T0056773.1 MGP_C3HHeJ_G0026097.1 mouse_genomes_project 2 122636776 122643472 + MGP_C3HHeJ_P0056773 Ccndbp1 protein_coding protein_coding MGP_C3HHeJ_T0056774.1 MGP_C3HHeJ_G0026097.1 mouse_genomes_project 2 122636811 122641288 + Ccndbp1 protein_coding processed_transcript MGP_C3HHeJ_T0056775.1 MGP_C3HHeJ_G0026097.1 mouse_genomes_project 2 122636816 122644849 + MGP_C3HHeJ_P0056775 Ccndbp1 protein_coding protein_coding MGP_C3HHeJ_T0056776.1 MGP_C3HHeJ_G0026097.1 mouse_genomes_project 2 122636854 122645233 + MGP_C3HHeJ_P0056776 Ccndbp1 protein_coding protein_coding MGP_C3HHeJ_T0056777.1 MGP_C3HHeJ_G0026097.1 mouse_genomes_project 2 122637048 122638919 + Ccndbp1 protein_coding retained_intron MGP_C3HHeJ_T0056778.1 MGP_C3HHeJ_G0026097.1 mouse_genomes_project 2 122639394 122640096 + Ccndbp1 protein_coding retained_intron MGP_C3HHeJ_T0056779.1 MGP_C3HHeJ_G0026097.1 mouse_genomes_project 2 122640830 122641300 + Ccndbp1 protein_coding processed_transcript MGP_C3HHeJ_T0058677.1 MGP_C3HHeJ_G0026530.1 mouse_genomes_project 2 166571569 166576561 + Srsf6 protein_coding retained_intron MGP_C3HHeJ_T0058678.1 MGP_C3HHeJ_G0026530.1 mouse_genomes_project 2 166571569 166578477 + MGP_C3HHeJ_P0058678 Srsf6 protein_coding protein_coding MGP_C3HHeJ_T0058679.1 MGP_C3HHeJ_G0026530.1 mouse_genomes_project 2 166571603 166576379 + MGP_C3HHeJ_P0058679 Srsf6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058680.1 MGP_C3HHeJ_G0026530.1 mouse_genomes_project 2 166571702 166573547 + MGP_C3HHeJ_P0058680 Srsf6 protein_coding protein_coding MGP_C3HHeJ_T0052611.1 MGP_C3HHeJ_G0025144.1 mouse_genomes_project 2 22033588 22090509 - MGP_C3HHeJ_P0052611 Pax8 protein_coding protein_coding MGP_C3HHeJ_T0052612.1 MGP_C3HHeJ_G0025144.1 mouse_genomes_project 2 22034422 22036111 - Pax8 protein_coding retained_intron MGP_C3HHeJ_T0052613.1 MGP_C3HHeJ_G0025144.1 mouse_genomes_project 2 22034548 22090007 - MGP_C3HHeJ_P0052613 Pax8 protein_coding protein_coding MGP_C3HHeJ_T0052614.1 MGP_C3HHeJ_G0025144.1 mouse_genomes_project 2 22034576 22090007 - MGP_C3HHeJ_P0052614 Pax8 protein_coding protein_coding MGP_C3HHeJ_T0052615.1 MGP_C3HHeJ_G0025144.1 mouse_genomes_project 2 22043537 22090484 - MGP_C3HHeJ_P0052615 Pax8 protein_coding protein_coding MGP_C3HHeJ_T0052616.1 MGP_C3HHeJ_G0025144.1 mouse_genomes_project 2 22055063 22090125 - MGP_C3HHeJ_P0052616 Pax8 protein_coding protein_coding MGP_C3HHeJ_T0052617.1 MGP_C3HHeJ_G0025144.1 mouse_genomes_project 2 22056884 22059787 - Pax8 protein_coding processed_transcript MGP_C3HHeJ_T0052618.1 MGP_C3HHeJ_G0025144.1 mouse_genomes_project 2 22086797 22090484 - Pax8 protein_coding retained_intron MGP_C3HHeJ_T0000991.1 MGP_C3HHeJ_G0000928.1 mouse_genomes_project 2 6804618 6805314 - TEC TEC MGP_C3HHeJ_T0057425.1 MGP_C3HHeJ_G0026244.1 mouse_genomes_project 2 133389231 133394117 - MGP_C3HHeJ_P0057425 Cenpb protein_coding protein_coding MGP_C3HHeJ_T0058785.1 MGP_C3HHeJ_G0026567.1 mouse_genomes_project 2 168127349 168138886 + Rbpjl protein_coding retained_intron MGP_C3HHeJ_T0058786.1 MGP_C3HHeJ_G0026567.1 mouse_genomes_project 2 168127402 168139543 + MGP_C3HHeJ_P0058786 Rbpjl protein_coding protein_coding MGP_C3HHeJ_T0058787.1 MGP_C3HHeJ_G0026567.1 mouse_genomes_project 2 168127417 168135549 + Rbpjl protein_coding processed_transcript MGP_C3HHeJ_T0054225.1 MGP_C3HHeJ_G0025431.1 mouse_genomes_project 2 35808417 35809257 + Gpr21 protein_coding processed_transcript MGP_C3HHeJ_T0054227.1 MGP_C3HHeJ_G0025431.1 mouse_genomes_project 2 35808711 35812689 + MGP_C3HHeJ_P0054227 Gpr21 protein_coding protein_coding MGP_C3HHeJ_T0010411.1 MGP_C3HHeJ_G0008544.1 mouse_genomes_project 2 186202204 186202273 - Mir7006 miRNA miRNA MGP_C3HHeJ_T0101923.1 MGP_C3HHeJ_G0039888.1 mouse_genomes_project 2 110433037 110457433 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0055509.1 MGP_C3HHeJ_G0025748.1 mouse_genomes_project 2 87766119 87767052 - MGP_C3HHeJ_P0055509 Olfr1135 protein_coding protein_coding MGP_C3HHeJ_T0013684.1 MGP_C3HHeJ_G0011788.1 mouse_genomes_project 2 158830322 158830784 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052697.1 MGP_C3HHeJ_G0025153.1 mouse_genomes_project 2 22726204 22728016 + Entpd8 protein_coding retained_intron MGP_C3HHeJ_T0052698.1 MGP_C3HHeJ_G0025153.1 mouse_genomes_project 2 22726222 22731617 + MGP_C3HHeJ_P0052698 Entpd8 protein_coding protein_coding MGP_C3HHeJ_T0052699.1 MGP_C3HHeJ_G0025153.1 mouse_genomes_project 2 22726225 22731617 + MGP_C3HHeJ_P0052699 Entpd8 protein_coding protein_coding MGP_C3HHeJ_T0052700.1 MGP_C3HHeJ_G0025153.1 mouse_genomes_project 2 22726409 22731616 + Entpd8 protein_coding retained_intron MGP_C3HHeJ_T0052701.1 MGP_C3HHeJ_G0025153.1 mouse_genomes_project 2 22727711 22731053 + Entpd8 protein_coding retained_intron MGP_C3HHeJ_T0052702.1 MGP_C3HHeJ_G0025153.1 mouse_genomes_project 2 22727718 22731617 + MGP_C3HHeJ_P0052702 Entpd8 protein_coding protein_coding MGP_C3HHeJ_T0052703.1 MGP_C3HHeJ_G0025153.1 mouse_genomes_project 2 22727933 22729635 + MGP_C3HHeJ_P0052703 Entpd8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052704.1 MGP_C3HHeJ_G0025153.1 mouse_genomes_project 2 22730577 22731475 + Entpd8 protein_coding retained_intron MGP_C3HHeJ_T0059124.1 MGP_C3HHeJ_G0026645.1 mouse_genomes_project 2 172469756 172586327 - MGP_C3HHeJ_P0059124 Nfatc2 protein_coding protein_coding MGP_C3HHeJ_T0059125.1 MGP_C3HHeJ_G0026645.1 mouse_genomes_project 2 172469756 172586222 - MGP_C3HHeJ_P0059125 Nfatc2 protein_coding protein_coding MGP_C3HHeJ_T0059126.1 MGP_C3HHeJ_G0026645.1 mouse_genomes_project 2 172469759 172548202 - Nfatc2 protein_coding processed_transcript MGP_C3HHeJ_T0059127.1 MGP_C3HHeJ_G0026645.1 mouse_genomes_project 2 172514238 172598602 - Nfatc2 protein_coding processed_transcript MGP_C3HHeJ_T0059128.1 MGP_C3HHeJ_G0026645.1 mouse_genomes_project 2 172515142 172598627 - MGP_C3HHeJ_P0059128 Nfatc2 protein_coding protein_coding MGP_C3HHeJ_T0059129.1 MGP_C3HHeJ_G0026645.1 mouse_genomes_project 2 172515428 172586153 - MGP_C3HHeJ_P0059129 Nfatc2 protein_coding protein_coding MGP_C3HHeJ_T0059130.1 MGP_C3HHeJ_G0026645.1 mouse_genomes_project 2 172529503 172586293 - Nfatc2 protein_coding retained_intron MGP_C3HHeJ_T0059131.1 MGP_C3HHeJ_G0026645.1 mouse_genomes_project 2 172562396 172586327 - Nfatc2 protein_coding retained_intron MGP_C3HHeJ_T0007145.1 MGP_C3HHeJ_G0005854.1 mouse_genomes_project 2 72971620 72989488 + Gm13708 lincRNA lincRNA MGP_C3HHeJ_T0058068.1 MGP_C3HHeJ_G0026413.1 mouse_genomes_project 2 156770376 156786095 - MGP_C3HHeJ_P0058068 Commd7 protein_coding protein_coding MGP_C3HHeJ_T0058069.1 MGP_C3HHeJ_G0026413.1 mouse_genomes_project 2 156772173 156786045 - Commd7 protein_coding retained_intron MGP_C3HHeJ_T0058070.1 MGP_C3HHeJ_G0026413.1 mouse_genomes_project 2 156772173 156786054 - MGP_C3HHeJ_P0058070 Commd7 protein_coding protein_coding MGP_C3HHeJ_T0013442.1 MGP_C3HHeJ_G0011546.1 mouse_genomes_project 2 68111947 68112337 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013273.1 MGP_C3HHeJ_G0011377.1 mouse_genomes_project 2 3161763 3163247 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007225.1 MGP_C3HHeJ_G0005918.1 mouse_genomes_project 2 118837700 118842146 - Gm13982 lincRNA lincRNA MGP_C3HHeJ_T0054263.1 MGP_C3HHeJ_G0025437.1 mouse_genomes_project 2 37017474 37035188 - MGP_C3HHeJ_P0054263 Nr5a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0054264.1 MGP_C3HHeJ_G0025437.1 mouse_genomes_project 2 37024779 37034646 - Nr5a1 protein_coding retained_intron MGP_C3HHeJ_T0099224.1 MGP_C3HHeJ_G0037418.1 mouse_genomes_project 2 155485382 155485445 + Gm27343 snRNA snRNA MGP_C3HHeJ_T0013688.1 MGP_C3HHeJ_G0011792.1 mouse_genomes_project 2 159668389 159668933 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052097.1 MGP_C3HHeJ_G0025054.1 mouse_genomes_project 2 2162703 2266752 + MGP_C3HHeJ_P0052097 Ccdc3 protein_coding protein_coding MGP_C3HHeJ_T0004050.1 MGP_C3HHeJ_G0003580.1 mouse_genomes_project 2 154578287 154579905 - Gm14167 antisense antisense MGP_C3HHeJ_T0013678.1 MGP_C3HHeJ_G0011782.1 mouse_genomes_project 2 157941044 157941265 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054160.1 MGP_C3HHeJ_G0025396.1 mouse_genomes_project 2 34405631 34461579 + MGP_C3HHeJ_P0054160 Mrrf protein_coding protein_coding MGP_C3HHeJ_T0054161.1 MGP_C3HHeJ_G0025396.1 mouse_genomes_project 2 34405640 34408059 + Mrrf protein_coding retained_intron MGP_C3HHeJ_T0054162.1 MGP_C3HHeJ_G0025396.1 mouse_genomes_project 2 34405876 34417150 + MGP_C3HHeJ_P0054162 Mrrf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054163.1 MGP_C3HHeJ_G0025396.1 mouse_genomes_project 2 34416333 34430191 + Mrrf protein_coding processed_transcript MGP_C3HHeJ_T0052566.1 MGP_C3HHeJ_G0025131.1 mouse_genomes_project 2 20690858 20735505 + MGP_C3HHeJ_P0052566 Yme1l1 protein_coding protein_coding MGP_C3HHeJ_T0052567.1 MGP_C3HHeJ_G0025131.1 mouse_genomes_project 2 20691007 20711582 + Yme1l1 protein_coding processed_transcript MGP_C3HHeJ_T0052568.1 MGP_C3HHeJ_G0025131.1 mouse_genomes_project 2 20691017 20695105 + Yme1l1 protein_coding processed_transcript MGP_C3HHeJ_T0052569.1 MGP_C3HHeJ_G0025131.1 mouse_genomes_project 2 20691322 20699104 + Yme1l1 protein_coding processed_transcript MGP_C3HHeJ_T0052570.1 MGP_C3HHeJ_G0025131.1 mouse_genomes_project 2 20702899 20708110 + Yme1l1 protein_coding processed_transcript MGP_C3HHeJ_T0052571.1 MGP_C3HHeJ_G0025131.1 mouse_genomes_project 2 20728585 20730822 + Yme1l1 protein_coding processed_transcript MGP_C3HHeJ_T0056105.1 MGP_C3HHeJ_G0025925.1 mouse_genomes_project 2 104176055 104207174 - MGP_C3HHeJ_P0056105 Cat protein_coding protein_coding MGP_C3HHeJ_T0056106.1 MGP_C3HHeJ_G0025925.1 mouse_genomes_project 2 104176800 104207139 - MGP_C3HHeJ_P0056106 Cat protein_coding protein_coding MGP_C3HHeJ_T0003822.1 MGP_C3HHeJ_G0003417.1 mouse_genomes_project 2 3473815 3478063 - Gm13388 antisense antisense MGP_C3HHeJ_T0003864.1 MGP_C3HHeJ_G0003449.1 mouse_genomes_project 2 26386641 26404611 + Gm13381 antisense antisense MGP_C3HHeJ_T0003865.1 MGP_C3HHeJ_G0003449.1 mouse_genomes_project 2 26386972 26404893 + Gm13381 antisense antisense MGP_C3HHeJ_T0001019.1 MGP_C3HHeJ_G0000956.1 mouse_genomes_project 2 12113899 12116263 - TEC TEC MGP_C3HHeJ_T0054178.1 MGP_C3HHeJ_G0025407.1 mouse_genomes_project 2 35059120 35062312 + MGP_C3HHeJ_P0054178 Olfr348 protein_coding protein_coding MGP_C3HHeJ_T0054179.1 MGP_C3HHeJ_G0025407.1 mouse_genomes_project 2 35061370 35062312 + MGP_C3HHeJ_P0054179 Olfr348 protein_coding protein_coding MGP_C3HHeJ_T0055295.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84179250 84220329 - MGP_C3HHeJ_P0055295 Tfpi protein_coding protein_coding MGP_C3HHeJ_T0055296.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84179250 84221824 - MGP_C3HHeJ_P0055296 Tfpi protein_coding protein_coding MGP_C3HHeJ_T0055297.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84179255 84181029 - Tfpi protein_coding processed_transcript MGP_C3HHeJ_T0055298.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84179255 84220719 - MGP_C3HHeJ_P0055298 Tfpi protein_coding protein_coding MGP_C3HHeJ_T0055299.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84186574 84224802 - MGP_C3HHeJ_P0055299 Tfpi protein_coding protein_coding MGP_C3HHeJ_T0055300.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84186574 84224814 - MGP_C3HHeJ_P0055300 Tfpi protein_coding protein_coding MGP_C3HHeJ_T0055301.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84186574 84224787 - MGP_C3HHeJ_P0055301 Tfpi protein_coding protein_coding MGP_C3HHeJ_T0055302.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84186574 84204248 - MGP_C3HHeJ_P0055302 Tfpi protein_coding protein_coding MGP_C3HHeJ_T0055303.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84187157 84220348 - MGP_C3HHeJ_P0055303 Tfpi protein_coding protein_coding MGP_C3HHeJ_T0055304.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84190503 84220344 - Tfpi protein_coding processed_transcript MGP_C3HHeJ_T0058954.1 MGP_C3HHeJ_G0026610.1 mouse_genomes_project 2 169164506 169179744 - MGP_C3HHeJ_P0058954 Zfp334 protein_coding protein_coding MGP_C3HHeJ_T0056897.1 MGP_C3HHeJ_G0026115.1 mouse_genomes_project 2 123097641 123102886 + MGP_C3HHeJ_P0056897 Hypk protein_coding protein_coding MGP_C3HHeJ_T0056898.1 MGP_C3HHeJ_G0026115.1 mouse_genomes_project 2 123101071 123102812 + Hypk protein_coding retained_intron MGP_C3HHeJ_T0056899.1 MGP_C3HHeJ_G0026115.1 mouse_genomes_project 2 123101341 123103048 + MGP_C3HHeJ_P0056899 Hypk protein_coding protein_coding MGP_C3HHeJ_T0056900.1 MGP_C3HHeJ_G0026115.1 mouse_genomes_project 2 123101502 123102685 + Hypk protein_coding retained_intron MGP_C3HHeJ_T0056901.1 MGP_C3HHeJ_G0026115.1 mouse_genomes_project 2 123101512 123102739 + Hypk protein_coding processed_transcript MGP_C3HHeJ_T0055230.1 MGP_C3HHeJ_G0025612.1 mouse_genomes_project 2 79407112 79516949 + MGP_C3HHeJ_P0055230 Ppp1r1c protein_coding protein_coding MGP_C3HHeJ_T0055231.1 MGP_C3HHeJ_G0025612.1 mouse_genomes_project 2 79407254 79515168 + MGP_C3HHeJ_P0055231 Ppp1r1c protein_coding protein_coding MGP_C3HHeJ_T0055232.1 MGP_C3HHeJ_G0025612.1 mouse_genomes_project 2 79407255 79522229 + MGP_C3HHeJ_P0055232 Ppp1r1c protein_coding protein_coding MGP_C3HHeJ_T0055233.1 MGP_C3HHeJ_G0025612.1 mouse_genomes_project 2 79407394 79525132 + Ppp1r1c protein_coding processed_transcript MGP_C3HHeJ_T0055234.1 MGP_C3HHeJ_G0025612.1 mouse_genomes_project 2 79491933 79515924 + Ppp1r1c protein_coding processed_transcript MGP_C3HHeJ_T0013635.1 MGP_C3HHeJ_G0011739.1 mouse_genomes_project 2 143722586 143723372 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101870.1 MGP_C3HHeJ_G0039835.1 mouse_genomes_project 2 18607487 18708628 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013532.1 MGP_C3HHeJ_G0011636.1 mouse_genomes_project 2 98482184 98482673 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055514.1 MGP_C3HHeJ_G0025753.1 mouse_genomes_project 2 87852930 87853865 - MGP_C3HHeJ_P0055514 Olfr1141 protein_coding protein_coding MGP_C3HHeJ_T0056322.1 MGP_C3HHeJ_G0025982.1 mouse_genomes_project 2 112606833 112607730 + MGP_C3HHeJ_P0056322 Olfr1289 protein_coding protein_coding MGP_C3HHeJ_T0007091.1 MGP_C3HHeJ_G0005810.1 mouse_genomes_project 2 31636812 31650614 + Gm13530 lincRNA lincRNA MGP_C3HHeJ_T0010355.1 MGP_C3HHeJ_G0008488.1 mouse_genomes_project 2 104567327 104567423 + Gm22757 miRNA miRNA MGP_C3HHeJ_T0059121.1 MGP_C3HHeJ_G0026644.1 mouse_genomes_project 2 172244974 172266743 - MGP_C3HHeJ_P0059121 Kcng1 protein_coding protein_coding MGP_C3HHeJ_T0059122.1 MGP_C3HHeJ_G0026644.1 mouse_genomes_project 2 172246555 172255039 - MGP_C3HHeJ_P0059122 Kcng1 protein_coding protein_coding MGP_C3HHeJ_T0059123.1 MGP_C3HHeJ_G0026644.1 mouse_genomes_project 2 172254806 172268157 - MGP_C3HHeJ_P0059123 Kcng1 protein_coding protein_coding MGP_C3HHeJ_T0013470.1 MGP_C3HHeJ_G0011574.1 mouse_genomes_project 2 78254384 78255638 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013391.1 MGP_C3HHeJ_G0011495.1 mouse_genomes_project 2 49607479 49609351 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052535.1 MGP_C3HHeJ_G0025127.1 mouse_genomes_project 2 20406468 20423643 + Pdss1 protein_coding processed_transcript MGP_C3HHeJ_T0052536.1 MGP_C3HHeJ_G0025127.1 mouse_genomes_project 2 20406468 20450566 + MGP_C3HHeJ_P0052536 Pdss1 protein_coding protein_coding MGP_C3HHeJ_T0052537.1 MGP_C3HHeJ_G0025127.1 mouse_genomes_project 2 20406541 20427157 + MGP_C3HHeJ_P0052537 Pdss1 protein_coding protein_coding MGP_C3HHeJ_T0052538.1 MGP_C3HHeJ_G0025127.1 mouse_genomes_project 2 20406565 20412774 + MGP_C3HHeJ_P0052538 Pdss1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052539.1 MGP_C3HHeJ_G0025127.1 mouse_genomes_project 2 20406994 20417768 + MGP_C3HHeJ_P0052539 Pdss1 protein_coding protein_coding MGP_C3HHeJ_T0052540.1 MGP_C3HHeJ_G0025127.1 mouse_genomes_project 2 20444372 20450555 + Pdss1 protein_coding retained_intron MGP_C3HHeJ_T0052541.1 MGP_C3HHeJ_G0025127.1 mouse_genomes_project 2 20445808 20450542 + MGP_C3HHeJ_P0052541 Pdss1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055873.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92608106 92790306 + MGP_C3HHeJ_P0055873 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055874.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92608175 92790312 + MGP_C3HHeJ_P0055874 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055875.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92608268 92640850 + Phf21a protein_coding processed_transcript MGP_C3HHeJ_T0055876.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92608276 92789357 + MGP_C3HHeJ_P0055876 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055877.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92608276 92747337 + MGP_C3HHeJ_P0055877 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055878.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92608302 92641359 + Phf21a protein_coding retained_intron MGP_C3HHeJ_T0055879.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92608302 92648186 + MGP_C3HHeJ_P0055879 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055880.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92608780 92655037 + MGP_C3HHeJ_P0055880 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055881.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92610055 92648189 + MGP_C3HHeJ_P0055881 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055882.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92610079 92789365 + MGP_C3HHeJ_P0055882 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055883.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92611061 92648201 + MGP_C3HHeJ_P0055883 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055884.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92648066 92793143 + MGP_C3HHeJ_P0055884 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055885.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92648066 92793143 + MGP_C3HHeJ_P0055885 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055886.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92648066 92793143 + MGP_C3HHeJ_P0055886 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055887.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92648066 92793143 + MGP_C3HHeJ_P0055887 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055888.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92648158 92793143 + MGP_C3HHeJ_P0055888 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055889.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92648166 92754160 + MGP_C3HHeJ_P0055889 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055890.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92655040 92788894 + MGP_C3HHeJ_P0055890 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055891.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92747496 92757722 + MGP_C3HHeJ_P0055891 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055892.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92757750 92787641 + MGP_C3HHeJ_P0055892 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055893.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92777376 92785454 + Phf21a protein_coding retained_intron MGP_C3HHeJ_T0055598.1 MGP_C3HHeJ_G0025826.1 mouse_genomes_project 2 89689259 89690490 - MGP_C3HHeJ_P0055598 Olfr1243 protein_coding protein_coding MGP_C3HHeJ_T0055599.1 MGP_C3HHeJ_G0025826.1 mouse_genomes_project 2 89690138 89693142 - Olfr1243 protein_coding processed_transcript MGP_C3HHeJ_T0013317.1 MGP_C3HHeJ_G0011421.1 mouse_genomes_project 2 20524595 20525132 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007291.1 MGP_C3HHeJ_G0005972.1 mouse_genomes_project 2 163463207 163497687 - Gm14223 lincRNA lincRNA MGP_C3HHeJ_T0013681.1 MGP_C3HHeJ_G0011785.1 mouse_genomes_project 2 158735016 158735331 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013489.1 MGP_C3HHeJ_G0011593.1 mouse_genomes_project 2 83253709 83253919 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054182.1 MGP_C3HHeJ_G0025410.1 mouse_genomes_project 2 35128248 35129187 + MGP_C3HHeJ_P0054182 Olfr350 protein_coding protein_coding MGP_C3HHeJ_T0058715.1 MGP_C3HHeJ_G0026541.1 mouse_genomes_project 2 167182210 167192878 + MGP_C3HHeJ_P0058715 R3hdml protein_coding protein_coding MGP_C3HHeJ_T0056431.1 MGP_C3HHeJ_G0026026.1 mouse_genomes_project 2 118265931 118281583 + MGP_C3HHeJ_P0056431 Tmco5 protein_coding protein_coding MGP_C3HHeJ_T0056432.1 MGP_C3HHeJ_G0026026.1 mouse_genomes_project 2 118265934 118281539 + MGP_C3HHeJ_P0056432 Tmco5 protein_coding protein_coding MGP_C3HHeJ_T0056433.1 MGP_C3HHeJ_G0026026.1 mouse_genomes_project 2 118265948 118281896 + MGP_C3HHeJ_P0056433 Tmco5 protein_coding protein_coding MGP_C3HHeJ_T0056434.1 MGP_C3HHeJ_G0026026.1 mouse_genomes_project 2 118275377 118281896 + Tmco5 protein_coding processed_transcript MGP_C3HHeJ_T0053369.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27802980 27814864 + MGP_C3HHeJ_P0053369 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053370.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27802993 27806337 + Odf2 protein_coding retained_intron MGP_C3HHeJ_T0053371.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803479 27836012 + MGP_C3HHeJ_P0053371 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053372.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803544 27836012 + MGP_C3HHeJ_P0053372 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053373.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803554 27844568 + MGP_C3HHeJ_P0053373 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053374.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803554 27845218 + MGP_C3HHeJ_P0053374 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053375.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803557 27844568 + MGP_C3HHeJ_P0053375 Odf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053376.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803570 27816033 + Odf2 protein_coding processed_transcript MGP_C3HHeJ_T0053377.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803574 27816003 + MGP_C3HHeJ_P0053377 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053378.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803576 27845218 + MGP_C3HHeJ_P0053378 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053379.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803577 27836012 + MGP_C3HHeJ_P0053379 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053380.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803584 27815250 + Odf2 protein_coding retained_intron MGP_C3HHeJ_T0053381.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803593 27817836 + MGP_C3HHeJ_P0053381 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053382.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803654 27845219 + MGP_C3HHeJ_P0053382 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053383.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803822 27836012 + MGP_C3HHeJ_P0053383 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053384.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803842 27804750 + Odf2 protein_coding processed_transcript MGP_C3HHeJ_T0053385.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803902 27836012 + MGP_C3HHeJ_P0053385 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053386.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803915 27844568 + MGP_C3HHeJ_P0053386 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053387.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27804299 27836009 + MGP_C3HHeJ_P0053387 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053388.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27805755 27814878 + Odf2 protein_coding processed_transcript MGP_C3HHeJ_T0053389.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27817300 27828300 + Odf2 protein_coding processed_transcript MGP_C3HHeJ_T0053390.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27817331 27828741 + Odf2 protein_coding processed_transcript MGP_C3HHeJ_T0053391.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27826050 27828704 + Odf2 protein_coding retained_intron MGP_C3HHeJ_T0053392.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27827820 27832622 + Odf2 protein_coding retained_intron MGP_C3HHeJ_T0053393.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27838944 27840218 + Odf2 protein_coding retained_intron MGP_C3HHeJ_T0013437.1 MGP_C3HHeJ_G0011541.1 mouse_genomes_project 2 65715141 65716292 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056584.1 MGP_C3HHeJ_G0026067.1 mouse_genomes_project 2 121161477 121198770 + MGP_C3HHeJ_P0056584 Nusap1 protein_coding protein_coding MGP_C3HHeJ_T0056585.1 MGP_C3HHeJ_G0026067.1 mouse_genomes_project 2 121161873 121182000 + Nusap1 protein_coding processed_transcript MGP_C3HHeJ_T0056586.1 MGP_C3HHeJ_G0026067.1 mouse_genomes_project 2 121161896 121201074 + MGP_C3HHeJ_P0056586 Nusap1 protein_coding protein_coding MGP_C3HHeJ_T0056587.1 MGP_C3HHeJ_G0026067.1 mouse_genomes_project 2 121161908 121174628 + Nusap1 protein_coding processed_transcript MGP_C3HHeJ_T0055458.1 MGP_C3HHeJ_G0025707.1 mouse_genomes_project 2 86707239 86708175 - MGP_C3HHeJ_P0055458 Olfr1089 protein_coding protein_coding MGP_C3HHeJ_T0010401.1 MGP_C3HHeJ_G0008534.1 mouse_genomes_project 2 177127141 177127219 - Gm22773 miRNA miRNA MGP_C3HHeJ_T0101886.1 MGP_C3HHeJ_G0039851.1 mouse_genomes_project 2 69593966 69596140 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0054261.1 MGP_C3HHeJ_G0025436.1 mouse_genomes_project 2 36908527 36966888 - MGP_C3HHeJ_P0054261 Psmb7 protein_coding protein_coding MGP_C3HHeJ_T0054262.1 MGP_C3HHeJ_G0025436.1 mouse_genomes_project 2 36933724 36966721 - Psmb7 protein_coding retained_intron MGP_C3HHeJ_T0003925.1 MGP_C3HHeJ_G0003498.1 mouse_genomes_project 2 69862408 69937015 - Gad1os antisense antisense MGP_C3HHeJ_T0003926.1 MGP_C3HHeJ_G0003498.1 mouse_genomes_project 2 69862715 69863939 - Gad1os antisense antisense MGP_C3HHeJ_T0055206.1 MGP_C3HHeJ_G0025608.1 mouse_genomes_project 2 78938364 78940791 + Itga4 protein_coding processed_transcript MGP_C3HHeJ_T0055207.1 MGP_C3HHeJ_G0025608.1 mouse_genomes_project 2 78938438 79022662 + MGP_C3HHeJ_P0055207 Itga4 protein_coding protein_coding MGP_C3HHeJ_T0055208.1 MGP_C3HHeJ_G0025608.1 mouse_genomes_project 2 78938510 78957840 + Itga4 protein_coding processed_transcript MGP_C3HHeJ_T0055209.1 MGP_C3HHeJ_G0025608.1 mouse_genomes_project 2 78938659 78978603 + Itga4 protein_coding processed_transcript MGP_C3HHeJ_T0055210.1 MGP_C3HHeJ_G0025608.1 mouse_genomes_project 2 78938885 78978307 + Itga4 protein_coding processed_transcript MGP_C3HHeJ_T0059638.1 MGP_C3HHeJ_G0026756.1 mouse_genomes_project 2 186527159 186529387 + MGP_C3HHeJ_P0059638 protein_coding protein_coding MGP_C3HHeJ_T0053173.1 MGP_C3HHeJ_G0025244.1 mouse_genomes_project 2 24865353 24896572 - MGP_C3HHeJ_P0053173 Fam163b protein_coding protein_coding MGP_C3HHeJ_T0013580.1 MGP_C3HHeJ_G0011684.1 mouse_genomes_project 2 113641280 113644545 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004046.1 MGP_C3HHeJ_G0003576.1 mouse_genomes_project 2 149016421 149024302 + A930019D19Rik antisense antisense MGP_C3HHeJ_T0011424.1 MGP_C3HHeJ_G0009557.1 mouse_genomes_project 2 160209468 160209714 + Gm27651 misc_RNA misc_RNA MGP_C3HHeJ_T0101935.1 MGP_C3HHeJ_G0039900.1 mouse_genomes_project 2 179454592 179457161 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013705.1 MGP_C3HHeJ_G0011809.1 mouse_genomes_project 2 166442645 166442978 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054469.1 MGP_C3HHeJ_G0025467.1 mouse_genomes_project 2 51192209 51458888 - MGP_C3HHeJ_P0054469 Cacnb4 protein_coding protein_coding MGP_C3HHeJ_T0054470.1 MGP_C3HHeJ_G0025467.1 mouse_genomes_project 2 51192214 51333898 - MGP_C3HHeJ_P0054470 Cacnb4 protein_coding protein_coding MGP_C3HHeJ_T0054471.1 MGP_C3HHeJ_G0025467.1 mouse_genomes_project 2 51192214 51459125 - MGP_C3HHeJ_P0054471 Cacnb4 protein_coding protein_coding MGP_C3HHeJ_T0054472.1 MGP_C3HHeJ_G0025467.1 mouse_genomes_project 2 51192214 51333905 - MGP_C3HHeJ_P0054472 Cacnb4 protein_coding protein_coding MGP_C3HHeJ_T0054473.1 MGP_C3HHeJ_G0025467.1 mouse_genomes_project 2 51331521 51332044 - Cacnb4 protein_coding processed_transcript MGP_C3HHeJ_T0054474.1 MGP_C3HHeJ_G0025467.1 mouse_genomes_project 2 51458033 51458450 - Cacnb4 protein_coding processed_transcript MGP_C3HHeJ_T0057507.1 MGP_C3HHeJ_G0026260.1 mouse_genomes_project 2 134513677 134552614 + MGP_C3HHeJ_P0057507 Cds2 protein_coding protein_coding MGP_C3HHeJ_T0057508.1 MGP_C3HHeJ_G0026260.1 mouse_genomes_project 2 134513776 134553693 + MGP_C3HHeJ_P0057508 Cds2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057509.1 MGP_C3HHeJ_G0026260.1 mouse_genomes_project 2 134513979 134561687 + MGP_C3HHeJ_P0057509 Cds2 protein_coding protein_coding MGP_C3HHeJ_T0057510.1 MGP_C3HHeJ_G0026260.1 mouse_genomes_project 2 134536091 134552010 + MGP_C3HHeJ_P0057510 Cds2 protein_coding protein_coding MGP_C3HHeJ_T0057511.1 MGP_C3HHeJ_G0026260.1 mouse_genomes_project 2 134557705 134561730 + MGP_C3HHeJ_P0057511 Cds2 protein_coding protein_coding MGP_C3HHeJ_T0004075.1 MGP_C3HHeJ_G0003603.1 mouse_genomes_project 2 166023900 166027030 + Ptprtos antisense antisense MGP_C3HHeJ_T0007157.1 MGP_C3HHeJ_G0005864.1 mouse_genomes_project 2 74689556 74702484 - Gm13652 lincRNA lincRNA MGP_C3HHeJ_T0054979.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71436537 71721054 + MGP_C3HHeJ_P0054979 Rapgef4 protein_coding protein_coding MGP_C3HHeJ_T0054980.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71436544 71489231 + Rapgef4 protein_coding processed_transcript MGP_C3HHeJ_T0054981.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71436556 71598351 + Rapgef4 protein_coding processed_transcript MGP_C3HHeJ_T0054982.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71436584 71719956 + MGP_C3HHeJ_P0054982 Rapgef4 protein_coding protein_coding MGP_C3HHeJ_T0054983.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71509434 71721052 + MGP_C3HHeJ_P0054983 Rapgef4 protein_coding protein_coding MGP_C3HHeJ_T0054984.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71509815 71598527 + Rapgef4 protein_coding processed_transcript MGP_C3HHeJ_T0054985.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71597760 71656555 + Rapgef4 protein_coding processed_transcript MGP_C3HHeJ_T0054986.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71597777 71620868 + Rapgef4 protein_coding processed_transcript MGP_C3HHeJ_T0054987.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71639181 71721052 + Rapgef4 protein_coding processed_transcript MGP_C3HHeJ_T0054988.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71659092 71668737 + Rapgef4 protein_coding processed_transcript MGP_C3HHeJ_T0054989.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71705145 71720235 + Rapgef4 protein_coding processed_transcript MGP_C3HHeJ_T0007082.1 MGP_C3HHeJ_G0005804.1 mouse_genomes_project 2 25882897 25916364 + F730016J06Rik lincRNA lincRNA MGP_C3HHeJ_T0007083.1 MGP_C3HHeJ_G0005804.1 mouse_genomes_project 2 25882903 25902502 + F730016J06Rik lincRNA lincRNA MGP_C3HHeJ_T0007084.1 MGP_C3HHeJ_G0005804.1 mouse_genomes_project 2 25906857 25913836 + F730016J06Rik lincRNA lincRNA MGP_C3HHeJ_T0055638.1 MGP_C3HHeJ_G0025851.1 mouse_genomes_project 2 90995031 91058332 + MGP_C3HHeJ_P0055638 Nup160 protein_coding protein_coding MGP_C3HHeJ_T0055639.1 MGP_C3HHeJ_G0025851.1 mouse_genomes_project 2 91002985 91010933 + Nup160 protein_coding processed_transcript MGP_C3HHeJ_T0055640.1 MGP_C3HHeJ_G0025851.1 mouse_genomes_project 2 91007515 91012652 + Nup160 protein_coding processed_transcript MGP_C3HHeJ_T0055641.1 MGP_C3HHeJ_G0025851.1 mouse_genomes_project 2 91008505 91020637 + Nup160 protein_coding processed_transcript MGP_C3HHeJ_T0055642.1 MGP_C3HHeJ_G0025851.1 mouse_genomes_project 2 91017929 91020258 + Nup160 protein_coding processed_transcript MGP_C3HHeJ_T0055643.1 MGP_C3HHeJ_G0025851.1 mouse_genomes_project 2 91039319 91039672 + Nup160 protein_coding processed_transcript MGP_C3HHeJ_T0055644.1 MGP_C3HHeJ_G0025851.1 mouse_genomes_project 2 91054727 91057788 + Nup160 protein_coding processed_transcript MGP_C3HHeJ_T0100446.1 MGP_C3HHeJ_G0038640.1 mouse_genomes_project 2 31345788 31345925 - Gm23546 snoRNA snoRNA MGP_C3HHeJ_T0013648.1 MGP_C3HHeJ_G0011752.1 mouse_genomes_project 2 148254360 148254824 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007110.1 MGP_C3HHeJ_G0005824.1 mouse_genomes_project 2 44276162 44297473 + Gm13465 lincRNA lincRNA MGP_C3HHeJ_T0013350.1 MGP_C3HHeJ_G0011454.1 mouse_genomes_project 2 35041364 35041937 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101873.1 MGP_C3HHeJ_G0039838.1 mouse_genomes_project 2 20079052 20079543 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0058823.1 MGP_C3HHeJ_G0026581.1 mouse_genomes_project 2 168395177 168402142 - MGP_C3HHeJ_P0058823 Wfdc9 protein_coding protein_coding MGP_C3HHeJ_T0058824.1 MGP_C3HHeJ_G0026581.1 mouse_genomes_project 2 168395333 168397312 - MGP_C3HHeJ_P0058824 Wfdc9 protein_coding protein_coding MGP_C3HHeJ_T0003983.1 MGP_C3HHeJ_G0003532.1 mouse_genomes_project 2 114704572 114706196 - Gm13966 antisense antisense MGP_C3HHeJ_T0054475.1 MGP_C3HHeJ_G0025468.1 mouse_genomes_project 2 51476203 51528872 - MGP_C3HHeJ_P0054475 Stam2 protein_coding protein_coding MGP_C3HHeJ_T0054476.1 MGP_C3HHeJ_G0025468.1 mouse_genomes_project 2 51486483 51528953 - MGP_C3HHeJ_P0054476 Stam2 protein_coding protein_coding MGP_C3HHeJ_T0054477.1 MGP_C3HHeJ_G0025468.1 mouse_genomes_project 2 51496380 51528852 - Stam2 protein_coding retained_intron MGP_C3HHeJ_T0054478.1 MGP_C3HHeJ_G0025468.1 mouse_genomes_project 2 51496662 51528862 - MGP_C3HHeJ_P0054478 Stam2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054479.1 MGP_C3HHeJ_G0025468.1 mouse_genomes_project 2 51506397 51528828 - MGP_C3HHeJ_P0054479 Stam2 protein_coding protein_coding MGP_C3HHeJ_T0007242.1 MGP_C3HHeJ_G0005933.1 mouse_genomes_project 2 130529966 130530891 + Gm14010 lincRNA lincRNA MGP_C3HHeJ_T0053652.1 MGP_C3HHeJ_G0025318.1 mouse_genomes_project 2 29253750 29304084 + MGP_C3HHeJ_P0053652 Ncs1 protein_coding protein_coding MGP_C3HHeJ_T0053653.1 MGP_C3HHeJ_G0025318.1 mouse_genomes_project 2 29254093 29300421 + MGP_C3HHeJ_P0053653 Ncs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013331.1 MGP_C3HHeJ_G0011435.1 mouse_genomes_project 2 26625898 26626118 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013448.1 MGP_C3HHeJ_G0011552.1 mouse_genomes_project 2 70236876 70237774 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007126.1 MGP_C3HHeJ_G0005838.1 mouse_genomes_project 2 58986676 58988373 + Gm13572 lincRNA lincRNA MGP_C3HHeJ_T0056329.1 MGP_C3HHeJ_G0025989.1 mouse_genomes_project 2 112937241 112938180 + MGP_C3HHeJ_P0056329 Olfr1301 protein_coding protein_coding MGP_C3HHeJ_T0059441.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185678011 185738582 - MGP_C3HHeJ_P0059441 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059442.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185678011 185738496 - MGP_C3HHeJ_P0059442 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059443.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185678018 185738409 - MGP_C3HHeJ_P0059443 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059444.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185678020 185738459 - MGP_C3HHeJ_P0059444 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059445.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185678020 185738459 - MGP_C3HHeJ_P0059445 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059446.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185678020 185738459 - MGP_C3HHeJ_P0059446 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059447.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185678020 185738459 - MGP_C3HHeJ_P0059447 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059448.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185682013 185738543 - MGP_C3HHeJ_P0059448 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059449.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185682931 185717110 - MGP_C3HHeJ_P0059449 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059450.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185682935 185738204 - MGP_C3HHeJ_P0059450 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059451.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185683331 185738413 - MGP_C3HHeJ_P0059451 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059452.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185684835 185712224 - MGP_C3HHeJ_P0059452 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059453.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185684885 185697887 - Kcnq2 protein_coding processed_transcript MGP_C3HHeJ_T0059454.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185687014 185703264 - Kcnq2 protein_coding retained_intron MGP_C3HHeJ_T0059455.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185688410 185738459 - Kcnq2 protein_coding retained_intron MGP_C3HHeJ_T0059456.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185698706 185738459 - Kcnq2 protein_coding retained_intron MGP_C3HHeJ_T0059457.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185698931 185738459 - Kcnq2 protein_coding retained_intron MGP_C3HHeJ_T0059458.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185710911 185738459 - Kcnq2 protein_coding processed_transcript MGP_C3HHeJ_T0059459.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185710911 185738525 - Kcnq2 protein_coding retained_intron MGP_C3HHeJ_T0059460.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185710911 185738459 - Kcnq2 protein_coding retained_intron MGP_C3HHeJ_T0059461.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185710911 185738459 - Kcnq2 protein_coding retained_intron MGP_C3HHeJ_T0055332.1 MGP_C3HHeJ_G0025634.1 mouse_genomes_project 2 84414084 84420587 - protein_coding processed_transcript MGP_C3HHeJ_T0055333.1 MGP_C3HHeJ_G0025634.1 mouse_genomes_project 2 84414162 84420581 - protein_coding processed_transcript MGP_C3HHeJ_T0055334.1 MGP_C3HHeJ_G0025634.1 mouse_genomes_project 2 84414210 84420577 - MGP_C3HHeJ_P0055334 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055335.1 MGP_C3HHeJ_G0025634.1 mouse_genomes_project 2 84418653 84421678 - MGP_C3HHeJ_P0055335 protein_coding protein_coding MGP_C3HHeJ_T0017540.1 MGP_C3HHeJ_G0015174.1 mouse_genomes_project 2 29152400 29158215 - D330023K18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017541.1 MGP_C3HHeJ_G0015174.1 mouse_genomes_project 2 29156564 29158215 - D330023K18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0055356.1 MGP_C3HHeJ_G0025642.1 mouse_genomes_project 2 84562906 84576193 - MGP_C3HHeJ_P0055356 Smtnl1 protein_coding protein_coding MGP_C3HHeJ_T0052059.1 MGP_C3HHeJ_G0025047.1 mouse_genomes_project 2 1619402 1651310 - MGP_C3HHeJ_P0052059 Prpf18 protein_coding unknown_likely_coding MGP_C3HHeJ_T0052060.1 MGP_C3HHeJ_G0025047.1 mouse_genomes_project 2 1619402 1651415 - MGP_C3HHeJ_P0052060 Prpf18 protein_coding protein_coding MGP_C3HHeJ_T0052061.1 MGP_C3HHeJ_G0025047.1 mouse_genomes_project 2 1621281 1651435 - Prpf18 protein_coding processed_transcript MGP_C3HHeJ_T0052062.1 MGP_C3HHeJ_G0025047.1 mouse_genomes_project 2 1621372 1651442 - MGP_C3HHeJ_P0052062 Prpf18 protein_coding protein_coding MGP_C3HHeJ_T0052063.1 MGP_C3HHeJ_G0025047.1 mouse_genomes_project 2 1636251 1651410 - MGP_C3HHeJ_P0052063 Prpf18 protein_coding protein_coding MGP_C3HHeJ_T0052064.1 MGP_C3HHeJ_G0025047.1 mouse_genomes_project 2 1636275 1651416 - Prpf18 protein_coding processed_transcript MGP_C3HHeJ_T0052065.1 MGP_C3HHeJ_G0025047.1 mouse_genomes_project 2 1641757 1651432 - Prpf18 protein_coding processed_transcript MGP_C3HHeJ_T0017534.1 MGP_C3HHeJ_G0015170.1 mouse_genomes_project 2 27117563 27125450 - 6530402F18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017535.1 MGP_C3HHeJ_G0015170.1 mouse_genomes_project 2 27123366 27125463 - 6530402F18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017520.1 MGP_C3HHeJ_G0015162.1 mouse_genomes_project 2 22054304 22104321 + Gm13415 processed_transcript antisense MGP_C3HHeJ_T0017521.1 MGP_C3HHeJ_G0015162.1 mouse_genomes_project 2 22056721 22079817 + Gm13415 processed_transcript antisense MGP_C3HHeJ_T0017522.1 MGP_C3HHeJ_G0015162.1 mouse_genomes_project 2 22056735 22059151 + Gm13415 processed_transcript retained_intron MGP_C3HHeJ_T0013706.1 MGP_C3HHeJ_G0011810.1 mouse_genomes_project 2 166535211 166538399 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003996.1 MGP_C3HHeJ_G0003541.1 mouse_genomes_project 2 120507086 120510681 + Gm14089 antisense antisense MGP_C3HHeJ_T0003843.1 MGP_C3HHeJ_G0003436.1 mouse_genomes_project 2 22829335 22831894 - Gm38287 antisense antisense MGP_C3HHeJ_T0013426.1 MGP_C3HHeJ_G0011530.1 mouse_genomes_project 2 60020929 60021549 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101933.1 MGP_C3HHeJ_G0039898.1 mouse_genomes_project 2 160238155 160280613 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0054329.1 MGP_C3HHeJ_G0025448.1 mouse_genomes_project 2 42234815 42894620 + MGP_C3HHeJ_P0054329 Arhgap15 protein_coding protein_coding MGP_C3HHeJ_T0054330.1 MGP_C3HHeJ_G0025448.1 mouse_genomes_project 2 42234825 42885290 + MGP_C3HHeJ_P0054330 Arhgap15 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054331.1 MGP_C3HHeJ_G0025448.1 mouse_genomes_project 2 42234860 42383967 + Arhgap15 protein_coding processed_transcript MGP_C3HHeJ_T0054332.1 MGP_C3HHeJ_G0025448.1 mouse_genomes_project 2 42234861 42885294 + MGP_C3HHeJ_P0054332 Arhgap15 protein_coding protein_coding MGP_C3HHeJ_T0054333.1 MGP_C3HHeJ_G0025448.1 mouse_genomes_project 2 42275438 42884155 + MGP_C3HHeJ_P0054333 Arhgap15 protein_coding unknown_likely_coding MGP_C3HHeJ_T0054334.1 MGP_C3HHeJ_G0025448.1 mouse_genomes_project 2 42568121 42651232 + Arhgap15 protein_coding processed_transcript MGP_C3HHeJ_T0056412.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117217363 117425259 - MGP_C3HHeJ_P0056412 Meis2 protein_coding protein_coding MGP_C3HHeJ_T0056413.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117217363 117425259 - MGP_C3HHeJ_P0056413 Meis2 protein_coding protein_coding MGP_C3HHeJ_T0056414.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117217363 117424463 - MGP_C3HHeJ_P0056414 Meis2 protein_coding protein_coding MGP_C3HHeJ_T0056415.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117217363 117424463 - MGP_C3HHeJ_P0056415 Meis2 protein_coding protein_coding MGP_C3HHeJ_T0056416.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117217444 117424137 - MGP_C3HHeJ_P0056416 Meis2 protein_coding protein_coding MGP_C3HHeJ_T0056417.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117217599 117423930 - MGP_C3HHeJ_P0056417 Meis2 protein_coding protein_coding MGP_C3HHeJ_T0056418.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117218203 117227243 - Meis2 protein_coding processed_transcript MGP_C3HHeJ_T0056419.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117218526 117223167 - Meis2 protein_coding retained_intron MGP_C3HHeJ_T0056420.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117218572 117401634 - Meis2 protein_coding processed_transcript MGP_C3HHeJ_T0056421.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117218617 117227154 - Meis2 protein_coding processed_transcript MGP_C3HHeJ_T0056422.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117218758 117227243 - Meis2 protein_coding processed_transcript MGP_C3HHeJ_T0056423.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117219169 117227262 - Meis2 protein_coding retained_intron MGP_C3HHeJ_T0056424.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117221175 117227246 - Meis2 protein_coding processed_transcript MGP_C3HHeJ_T0056425.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117279441 117409309 - Meis2 protein_coding processed_transcript MGP_C3HHeJ_T0056426.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117355400 117421935 - Meis2 protein_coding retained_intron MGP_C3HHeJ_T0056427.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117398214 117408841 - Meis2 protein_coding retained_intron MGP_C3HHeJ_T0056428.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117408712 117422996 - Meis2 protein_coding processed_transcript MGP_C3HHeJ_T0056429.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117408712 117422105 - Meis2 protein_coding processed_transcript MGP_C3HHeJ_T0056430.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117408735 117418422 - Meis2 protein_coding retained_intron MGP_C3HHeJ_T0058058.1 MGP_C3HHeJ_G0026410.1 mouse_genomes_project 2 156470200 156535512 + MGP_C3HHeJ_P0058058 Asxl1 protein_coding protein_coding MGP_C3HHeJ_T0058059.1 MGP_C3HHeJ_G0026410.1 mouse_genomes_project 2 156470689 156535519 + MGP_C3HHeJ_P0058059 Asxl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0058060.1 MGP_C3HHeJ_G0026410.1 mouse_genomes_project 2 156472030 156481486 + Asxl1 protein_coding processed_transcript MGP_C3HHeJ_T0058061.1 MGP_C3HHeJ_G0026410.1 mouse_genomes_project 2 156472158 156521408 + Asxl1 protein_coding processed_transcript MGP_C3HHeJ_T0058062.1 MGP_C3HHeJ_G0026410.1 mouse_genomes_project 2 156522673 156528342 + Asxl1 protein_coding retained_intron MGP_C3HHeJ_T0055081.1 MGP_C3HHeJ_G0025580.1 mouse_genomes_project 2 74214286 74217468 + MGP_C3HHeJ_P0055081 Hoxd10 protein_coding protein_coding MGP_C3HHeJ_T0007340.1 MGP_C3HHeJ_G0006015.1 mouse_genomes_project 2 175393055 175398038 + 1700007M16Rik lincRNA lincRNA MGP_C3HHeJ_T0054374.1 MGP_C3HHeJ_G0025451.1 mouse_genomes_project 2 47446773 47540025 + MGP_C3HHeJ_P0054374 Acvr2a protein_coding protein_coding MGP_C3HHeJ_T0054375.1 MGP_C3HHeJ_G0025451.1 mouse_genomes_project 2 47527144 47537004 + Acvr2a protein_coding processed_transcript MGP_C3HHeJ_T0013603.1 MGP_C3HHeJ_G0011707.1 mouse_genomes_project 2 130692346 130692620 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013362.1 MGP_C3HHeJ_G0011466.1 mouse_genomes_project 2 37578631 37578994 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013691.1 MGP_C3HHeJ_G0011795.1 mouse_genomes_project 2 160127938 160128530 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053594.1 MGP_C3HHeJ_G0025311.1 mouse_genomes_project 2 28879209 28893040 - MGP_C3HHeJ_P0053594 Ptges protein_coding protein_coding MGP_C3HHeJ_T0053595.1 MGP_C3HHeJ_G0025311.1 mouse_genomes_project 2 28882020 28891523 - Ptges protein_coding processed_transcript MGP_C3HHeJ_T0053596.1 MGP_C3HHeJ_G0025311.1 mouse_genomes_project 2 28882034 28924002 - Ptges protein_coding processed_transcript MGP_C3HHeJ_T0053597.1 MGP_C3HHeJ_G0025311.1 mouse_genomes_project 2 28882226 28887204 - Ptges protein_coding processed_transcript MGP_C3HHeJ_T0011421.1 MGP_C3HHeJ_G0009554.1 mouse_genomes_project 2 150058498 150058822 - Gm22261 misc_RNA misc_RNA MGP_C3HHeJ_T0052142.1 MGP_C3HHeJ_G0025064.1 mouse_genomes_project 2 3358151 3488476 + MGP_C3HHeJ_P0052142 Usp6nl protein_coding protein_coding MGP_C3HHeJ_T0052143.1 MGP_C3HHeJ_G0025064.1 mouse_genomes_project 2 3358256 3463042 + Usp6nl protein_coding processed_transcript MGP_C3HHeJ_T0052144.1 MGP_C3HHeJ_G0025064.1 mouse_genomes_project 2 3387580 3485524 + MGP_C3HHeJ_P0052144 Usp6nl protein_coding protein_coding MGP_C3HHeJ_T0052145.1 MGP_C3HHeJ_G0025064.1 mouse_genomes_project 2 3462951 3466865 + Usp6nl protein_coding processed_transcript MGP_C3HHeJ_T0052198.1 MGP_C3HHeJ_G0025072.1 mouse_genomes_project 2 7292907 7333436 - MGP_C3HHeJ_P0052198 Itih2 protein_coding protein_coding MGP_C3HHeJ_T0052199.1 MGP_C3HHeJ_G0025072.1 mouse_genomes_project 2 7310826 7333848 - MGP_C3HHeJ_P0052199 Itih2 protein_coding protein_coding MGP_C3HHeJ_T0052200.1 MGP_C3HHeJ_G0025072.1 mouse_genomes_project 2 7329053 7334169 - MGP_C3HHeJ_P0052200 Itih2 protein_coding protein_coding MGP_C3HHeJ_T0055326.1 MGP_C3HHeJ_G0025633.1 mouse_genomes_project 2 84410318 84411874 - MGP_C3HHeJ_P0055326 2700094K13Rik protein_coding protein_coding MGP_C3HHeJ_T0055327.1 MGP_C3HHeJ_G0025633.1 mouse_genomes_project 2 84410324 84411812 - MGP_C3HHeJ_P0055327 2700094K13Rik protein_coding protein_coding MGP_C3HHeJ_T0055328.1 MGP_C3HHeJ_G0025633.1 mouse_genomes_project 2 84410410 84411780 - MGP_C3HHeJ_P0055328 2700094K13Rik protein_coding protein_coding MGP_C3HHeJ_T0055329.1 MGP_C3HHeJ_G0025633.1 mouse_genomes_project 2 84410798 84411801 - MGP_C3HHeJ_P0055329 2700094K13Rik protein_coding protein_coding MGP_C3HHeJ_T0055330.1 MGP_C3HHeJ_G0025633.1 mouse_genomes_project 2 84411053 84411780 - 2700094K13Rik protein_coding retained_intron MGP_C3HHeJ_T0055331.1 MGP_C3HHeJ_G0025633.1 mouse_genomes_project 2 84411120 84411758 - MGP_C3HHeJ_P0055331 2700094K13Rik protein_coding protein_coding MGP_C3HHeJ_T0055840.1 MGP_C3HHeJ_G0025877.1 mouse_genomes_project 2 92088305 92091285 + MGP_C3HHeJ_P0055840 Harbi1 protein_coding protein_coding MGP_C3HHeJ_T0055841.1 MGP_C3HHeJ_G0025877.1 mouse_genomes_project 2 92088306 92091683 + MGP_C3HHeJ_P0055841 Harbi1 protein_coding protein_coding MGP_C3HHeJ_T0055842.1 MGP_C3HHeJ_G0025877.1 mouse_genomes_project 2 92088370 92094359 + MGP_C3HHeJ_P0055842 Harbi1 protein_coding protein_coding MGP_C3HHeJ_T0055843.1 MGP_C3HHeJ_G0025877.1 mouse_genomes_project 2 92088375 92100474 + MGP_C3HHeJ_P0055843 Harbi1 protein_coding protein_coding MGP_C3HHeJ_T0055844.1 MGP_C3HHeJ_G0025877.1 mouse_genomes_project 2 92091152 92098216 + MGP_C3HHeJ_P0055844 Harbi1 protein_coding protein_coding MGP_C3HHeJ_T0052472.1 MGP_C3HHeJ_G0025117.1 mouse_genomes_project 2 17180232 17183064 + MGP_C3HHeJ_P0052472 Otud1 protein_coding protein_coding MGP_C3HHeJ_T0058888.1 MGP_C3HHeJ_G0026600.1 mouse_genomes_project 2 168657573 168678437 - MGP_C3HHeJ_P0058888 Zfp335 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058889.1 MGP_C3HHeJ_G0026600.1 mouse_genomes_project 2 168657573 168678437 - MGP_C3HHeJ_P0058889 Zfp335 protein_coding protein_coding MGP_C3HHeJ_T0058890.1 MGP_C3HHeJ_G0026600.1 mouse_genomes_project 2 168668419 168674345 - MGP_C3HHeJ_P0058890 Zfp335 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013714.1 MGP_C3HHeJ_G0011818.1 mouse_genomes_project 2 170367502 170367998 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013372.1 MGP_C3HHeJ_G0011476.1 mouse_genomes_project 2 39358007 39358971 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003998.1 MGP_C3HHeJ_G0003543.1 mouse_genomes_project 2 122929736 122932639 - Gm14978 antisense antisense MGP_C3HHeJ_T0003868.1 MGP_C3HHeJ_G0003452.1 mouse_genomes_project 2 28179492 28180922 - 1700084E18Rik antisense antisense MGP_C3HHeJ_T0003869.1 MGP_C3HHeJ_G0003452.1 mouse_genomes_project 2 28180190 28180922 - 1700084E18Rik antisense pseudogene MGP_C3HHeJ_T0055676.1 MGP_C3HHeJ_G0025856.1 mouse_genomes_project 2 91225772 91229588 - Ndufs3 protein_coding processed_transcript MGP_C3HHeJ_T0055677.1 MGP_C3HHeJ_G0025856.1 mouse_genomes_project 2 91225774 91236952 - MGP_C3HHeJ_P0055677 Ndufs3 protein_coding protein_coding MGP_C3HHeJ_T0055678.1 MGP_C3HHeJ_G0025856.1 mouse_genomes_project 2 91225776 91234811 - Ndufs3 protein_coding processed_transcript MGP_C3HHeJ_T0055679.1 MGP_C3HHeJ_G0025856.1 mouse_genomes_project 2 91229429 91236767 - Ndufs3 protein_coding processed_transcript MGP_C3HHeJ_T0055680.1 MGP_C3HHeJ_G0025856.1 mouse_genomes_project 2 91235949 91236827 - Ndufs3 protein_coding processed_transcript MGP_C3HHeJ_T0055564.1 MGP_C3HHeJ_G0025800.1 mouse_genomes_project 2 89116128 89117064 - MGP_C3HHeJ_P0055564 protein_coding protein_coding MGP_C3HHeJ_T0058094.1 MGP_C3HHeJ_G0026419.1 mouse_genomes_project 2 157076635 157089039 + MGP_C3HHeJ_P0058094 Bpifb6 protein_coding protein_coding MGP_C3HHeJ_T0058095.1 MGP_C3HHeJ_G0026419.1 mouse_genomes_project 2 157076642 157083171 + MGP_C3HHeJ_P0058095 Bpifb6 protein_coding protein_coding MGP_C3HHeJ_T0054951.1 MGP_C3HHeJ_G0025555.1 mouse_genomes_project 2 70855077 70934818 + MGP_C3HHeJ_P0054951 Metap1d protein_coding protein_coding MGP_C3HHeJ_T0054952.1 MGP_C3HHeJ_G0025555.1 mouse_genomes_project 2 70855134 70925540 + Metap1d protein_coding processed_transcript MGP_C3HHeJ_T0054953.1 MGP_C3HHeJ_G0025555.1 mouse_genomes_project 2 70855152 70934821 + Metap1d protein_coding processed_transcript MGP_C3HHeJ_T0054954.1 MGP_C3HHeJ_G0025555.1 mouse_genomes_project 2 70855164 70934413 + Metap1d protein_coding processed_transcript MGP_C3HHeJ_T0054955.1 MGP_C3HHeJ_G0025555.1 mouse_genomes_project 2 70919824 70926731 + Metap1d protein_coding processed_transcript MGP_C3HHeJ_T0054956.1 MGP_C3HHeJ_G0025555.1 mouse_genomes_project 2 70924996 70925866 + Metap1d protein_coding processed_transcript MGP_C3HHeJ_T0056436.1 MGP_C3HHeJ_G0026028.1 mouse_genomes_project 2 118521433 118589026 + MGP_C3HHeJ_P0056436 Spred1 protein_coding protein_coding MGP_C3HHeJ_T0056437.1 MGP_C3HHeJ_G0026028.1 mouse_genomes_project 2 118521697 118578701 + MGP_C3HHeJ_P0056437 Spred1 protein_coding protein_coding MGP_C3HHeJ_T0055336.1 MGP_C3HHeJ_G0025635.1 mouse_genomes_project 2 84420939 84430622 + MGP_C3HHeJ_P0055336 Med19 protein_coding protein_coding MGP_C3HHeJ_T0055337.1 MGP_C3HHeJ_G0025635.1 mouse_genomes_project 2 84428039 84429906 + Med19 protein_coding processed_transcript MGP_C3HHeJ_T0057781.1 MGP_C3HHeJ_G0026320.1 mouse_genomes_project 2 149816975 149884552 + MGP_C3HHeJ_P0057781 Xrn2 protein_coding protein_coding MGP_C3HHeJ_T0057782.1 MGP_C3HHeJ_G0026320.1 mouse_genomes_project 2 149835438 149844943 + Xrn2 protein_coding retained_intron MGP_C3HHeJ_T0057783.1 MGP_C3HHeJ_G0026320.1 mouse_genomes_project 2 149849216 149854400 + Xrn2 protein_coding retained_intron MGP_C3HHeJ_T0057784.1 MGP_C3HHeJ_G0026320.1 mouse_genomes_project 2 149867988 149875452 + Xrn2 protein_coding retained_intron MGP_C3HHeJ_T0057818.1 MGP_C3HHeJ_G0026336.1 mouse_genomes_project 2 151676552 151686984 + MGP_C3HHeJ_P0057818 Cst13 protein_coding protein_coding MGP_C3HHeJ_T0007243.1 MGP_C3HHeJ_G0005934.1 mouse_genomes_project 2 131355002 131371608 + A730036I17Rik lincRNA lincRNA MGP_C3HHeJ_T0007244.1 MGP_C3HHeJ_G0005934.1 mouse_genomes_project 2 131355061 131369277 + A730036I17Rik lincRNA lincRNA MGP_C3HHeJ_T0007245.1 MGP_C3HHeJ_G0005934.1 mouse_genomes_project 2 131364058 131367994 + A730036I17Rik lincRNA lincRNA MGP_C3HHeJ_T0056633.1 MGP_C3HHeJ_G0026076.1 mouse_genomes_project 2 121599903 121604864 + MGP_C3HHeJ_P0056633 Jmjd7 protein_coding protein_coding MGP_C3HHeJ_T0056635.1 MGP_C3HHeJ_G0026076.1 mouse_genomes_project 2 121599924 121602808 + MGP_C3HHeJ_P0056635 Jmjd7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056638.1 MGP_C3HHeJ_G0026076.1 mouse_genomes_project 2 121599936 121604146 + Jmjd7 protein_coding processed_transcript MGP_C3HHeJ_T0056639.1 MGP_C3HHeJ_G0026076.1 mouse_genomes_project 2 121599977 121603663 + Jmjd7 protein_coding processed_transcript MGP_C3HHeJ_T0056640.1 MGP_C3HHeJ_G0026076.1 mouse_genomes_project 2 121600014 121602655 + MGP_C3HHeJ_P0056640 Jmjd7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057497.1 MGP_C3HHeJ_G0026258.1 mouse_genomes_project 2 134489267 134498400 - MGP_C3HHeJ_P0057497 Tmem230 protein_coding protein_coding MGP_C3HHeJ_T0057498.1 MGP_C3HHeJ_G0026258.1 mouse_genomes_project 2 134489267 134498362 - MGP_C3HHeJ_P0057498 Tmem230 protein_coding protein_coding MGP_C3HHeJ_T0057499.1 MGP_C3HHeJ_G0026258.1 mouse_genomes_project 2 134489267 134498247 - MGP_C3HHeJ_P0057499 Tmem230 protein_coding protein_coding MGP_C3HHeJ_T0057500.1 MGP_C3HHeJ_G0026258.1 mouse_genomes_project 2 134489269 134498381 - MGP_C3HHeJ_P0057500 Tmem230 protein_coding protein_coding MGP_C3HHeJ_T0057501.1 MGP_C3HHeJ_G0026258.1 mouse_genomes_project 2 134495912 134498352 - Tmem230 protein_coding processed_transcript MGP_C3HHeJ_T0057502.1 MGP_C3HHeJ_G0026258.1 mouse_genomes_project 2 134496444 134498349 - Tmem230 protein_coding retained_intron MGP_C3HHeJ_T0055493.1 MGP_C3HHeJ_G0025738.1 mouse_genomes_project 2 87574090 87576758 + Pramel6 protein_coding processed_transcript MGP_C3HHeJ_T0055494.1 MGP_C3HHeJ_G0025738.1 mouse_genomes_project 2 87574090 87576749 + Pramel6 protein_coding processed_transcript MGP_C3HHeJ_T0055495.1 MGP_C3HHeJ_G0025738.1 mouse_genomes_project 2 87574108 87576929 + Pramel6 protein_coding processed_transcript MGP_C3HHeJ_T0055496.1 MGP_C3HHeJ_G0025738.1 mouse_genomes_project 2 87574951 87576842 + Pramel6 protein_coding processed_transcript MGP_C3HHeJ_T0055497.1 MGP_C3HHeJ_G0025738.1 mouse_genomes_project 2 87574951 87578402 + MGP_C3HHeJ_P0055497 Pramel6 protein_coding protein_coding MGP_C3HHeJ_T0055498.1 MGP_C3HHeJ_G0025738.1 mouse_genomes_project 2 87575984 87578395 + MGP_C3HHeJ_P0055498 Pramel6 protein_coding protein_coding MGP_C3HHeJ_T0059055.1 MGP_C3HHeJ_G0026627.1 mouse_genomes_project 2 171011138 171101625 - MGP_C3HHeJ_P0059055 Kcnb1 protein_coding protein_coding MGP_C3HHeJ_T0058575.1 MGP_C3HHeJ_G0026509.1 mouse_genomes_project 2 161770119 161785130 + Lbp protein_coding processed_transcript MGP_C3HHeJ_T0058576.1 MGP_C3HHeJ_G0026509.1 mouse_genomes_project 2 161770119 161774140 + MGP_C3HHeJ_P0058576 Lbp protein_coding protein_coding MGP_C3HHeJ_T0058577.1 MGP_C3HHeJ_G0026509.1 mouse_genomes_project 2 161770119 161799061 + MGP_C3HHeJ_P0058577 Lbp protein_coding protein_coding MGP_C3HHeJ_T0058578.1 MGP_C3HHeJ_G0026509.1 mouse_genomes_project 2 161770238 161782790 + Lbp protein_coding retained_intron MGP_C3HHeJ_T0058579.1 MGP_C3HHeJ_G0026509.1 mouse_genomes_project 2 161778362 161788811 + MGP_C3HHeJ_P0058579 Lbp protein_coding protein_coding MGP_C3HHeJ_T0013464.1 MGP_C3HHeJ_G0011568.1 mouse_genomes_project 2 75397373 75398139 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059506.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185964926 185972401 - MGP_C3HHeJ_P0059506 Arfrp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059507.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185964982 185967238 - Arfrp1 protein_coding retained_intron MGP_C3HHeJ_T0059508.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185965591 185972302 - MGP_C3HHeJ_P0059508 Arfrp1 protein_coding protein_coding MGP_C3HHeJ_T0059509.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185966412 185972393 - Arfrp1 protein_coding retained_intron MGP_C3HHeJ_T0059510.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185966525 185972379 - Arfrp1 protein_coding retained_intron MGP_C3HHeJ_T0059511.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185966599 185971864 - Arfrp1 protein_coding retained_intron MGP_C3HHeJ_T0059512.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185966806 185972420 - Arfrp1 protein_coding retained_intron MGP_C3HHeJ_T0059513.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185966812 185972397 - MGP_C3HHeJ_P0059513 Arfrp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059514.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185968546 185972326 - Arfrp1 protein_coding processed_transcript MGP_C3HHeJ_T0059515.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185971342 185972410 - Arfrp1 protein_coding retained_intron MGP_C3HHeJ_T0013394.1 MGP_C3HHeJ_G0011498.1 mouse_genomes_project 2 50326946 50327181 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017697.1 MGP_C3HHeJ_G0015256.1 mouse_genomes_project 2 176135550 176141454 - 1700028P15Rik processed_transcript lincRNA MGP_C3HHeJ_T0017698.1 MGP_C3HHeJ_G0015256.1 mouse_genomes_project 2 176136857 176140752 - 1700028P15Rik processed_transcript lincRNA MGP_C3HHeJ_T0017699.1 MGP_C3HHeJ_G0015256.1 mouse_genomes_project 2 176136858 176141479 - 1700028P15Rik processed_transcript retained_intron MGP_C3HHeJ_T0010264.1 MGP_C3HHeJ_G0008397.1 mouse_genomes_project 2 7697790 7697863 + Mir466 miRNA miRNA MGP_C3HHeJ_T0004028.1 MGP_C3HHeJ_G0003563.1 mouse_genomes_project 2 135130478 135131736 - Gm14104 antisense antisense MGP_C3HHeJ_T0013652.1 MGP_C3HHeJ_G0011756.1 mouse_genomes_project 2 149680862 149681464 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007323.1 MGP_C3HHeJ_G0006000.1 mouse_genomes_project 2 172275507 172281608 - Gm14262 lincRNA lincRNA MGP_C3HHeJ_T0013514.1 MGP_C3HHeJ_G0011618.1 mouse_genomes_project 2 91366426 91366771 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056060.1 MGP_C3HHeJ_G0025918.1 mouse_genomes_project 2 103259317 103347359 + MGP_C3HHeJ_P0056060 Pamr1 protein_coding protein_coding MGP_C3HHeJ_T0056061.1 MGP_C3HHeJ_G0025918.1 mouse_genomes_project 2 103259454 103340066 + Pamr1 protein_coding retained_intron MGP_C3HHeJ_T0056062.1 MGP_C3HHeJ_G0025918.1 mouse_genomes_project 2 103340443 103345098 + Pamr1 protein_coding retained_intron MGP_C3HHeJ_T0052994.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24057754 24085179 + MGP_C3HHeJ_P0052994 Gpsm1 protein_coding protein_coding MGP_C3HHeJ_T0052995.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24057831 24085179 + MGP_C3HHeJ_P0052995 Gpsm1 protein_coding protein_coding MGP_C3HHeJ_T0052996.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24061981 24085179 + MGP_C3HHeJ_P0052996 Gpsm1 protein_coding protein_coding MGP_C3HHeJ_T0052997.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24065799 24085179 + MGP_C3HHeJ_P0052997 Gpsm1 protein_coding protein_coding MGP_C3HHeJ_T0052998.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24067541 24069895 + Gpsm1 protein_coding processed_transcript MGP_C3HHeJ_T0052999.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24068052 24077392 + Gpsm1 protein_coding processed_transcript MGP_C3HHeJ_T0053000.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24068242 24076862 + Gpsm1 protein_coding processed_transcript MGP_C3HHeJ_T0053001.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24072591 24085179 + MGP_C3HHeJ_P0053001 Gpsm1 protein_coding protein_coding MGP_C3HHeJ_T0053002.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24072634 24077473 + MGP_C3HHeJ_P0053002 Gpsm1 protein_coding protein_coding MGP_C3HHeJ_T0053003.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24076372 24082273 + Gpsm1 protein_coding processed_transcript MGP_C3HHeJ_T0053004.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24076389 24081666 + Gpsm1 protein_coding processed_transcript MGP_C3HHeJ_T0053005.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24079230 24084217 + Gpsm1 protein_coding processed_transcript MGP_C3HHeJ_T0053006.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24081179 24083852 + Gpsm1 protein_coding processed_transcript MGP_C3HHeJ_T0057534.1 MGP_C3HHeJ_G0026264.1 mouse_genomes_project 2 135059914 135076030 + MGP_C3HHeJ_P0057534 Chgb protein_coding protein_coding MGP_C3HHeJ_T0054755.1 MGP_C3HHeJ_G0025516.1 mouse_genomes_project 2 65460371 65503683 - MGP_C3HHeJ_P0054755 Scn1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054756.1 MGP_C3HHeJ_G0025516.1 mouse_genomes_project 2 65460374 65600679 - MGP_C3HHeJ_P0054756 Scn1a protein_coding protein_coding MGP_C3HHeJ_T0054757.1 MGP_C3HHeJ_G0025516.1 mouse_genomes_project 2 65460375 65624985 - MGP_C3HHeJ_P0054757 Scn1a protein_coding protein_coding MGP_C3HHeJ_T0054758.1 MGP_C3HHeJ_G0025516.1 mouse_genomes_project 2 65460377 65537900 - MGP_C3HHeJ_P0054758 Scn1a protein_coding protein_coding MGP_C3HHeJ_T0054759.1 MGP_C3HHeJ_G0025516.1 mouse_genomes_project 2 65462478 65537882 - MGP_C3HHeJ_P0054759 Scn1a protein_coding protein_coding MGP_C3HHeJ_T0054760.1 MGP_C3HHeJ_G0025516.1 mouse_genomes_project 2 65462485 65503876 - MGP_C3HHeJ_P0054760 Scn1a protein_coding protein_coding MGP_C3HHeJ_T0054761.1 MGP_C3HHeJ_G0025516.1 mouse_genomes_project 2 65511742 65624988 - MGP_C3HHeJ_P0054761 Scn1a protein_coding protein_coding MGP_C3HHeJ_T0054762.1 MGP_C3HHeJ_G0025516.1 mouse_genomes_project 2 65535078 65624962 - Scn1a protein_coding retained_intron MGP_C3HHeJ_T0056362.1 MGP_C3HHeJ_G0026010.1 mouse_genomes_project 2 113681813 113699827 + MGP_C3HHeJ_P0056362 Emc7 protein_coding protein_coding MGP_C3HHeJ_T0013510.1 MGP_C3HHeJ_G0011614.1 mouse_genomes_project 2 87959144 87959491 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055581.1 MGP_C3HHeJ_G0025814.1 mouse_genomes_project 2 89401301 89402273 - MGP_C3HHeJ_P0055581 Olfr1228 protein_coding protein_coding MGP_C3HHeJ_T0058891.1 MGP_C3HHeJ_G0026601.1 mouse_genomes_project 2 168707802 168716525 + MGP_C3HHeJ_P0058891 Mmp9 protein_coding protein_coding MGP_C3HHeJ_T0058892.1 MGP_C3HHeJ_G0026601.1 mouse_genomes_project 2 168715850 168723495 + MGP_C3HHeJ_P0058892 Mmp9 protein_coding protein_coding MGP_C3HHeJ_T0058893.1 MGP_C3HHeJ_G0026601.1 mouse_genomes_project 2 168718331 168718898 + Mmp9 protein_coding retained_intron MGP_C3HHeJ_T0058894.1 MGP_C3HHeJ_G0026601.1 mouse_genomes_project 2 168722030 168723495 + Mmp9 protein_coding processed_transcript MGP_C3HHeJ_T0057030.1 MGP_C3HHeJ_G0026148.1 mouse_genomes_project 2 127470911 127473689 + MGP_C3HHeJ_P0057030 Gm9913 protein_coding protein_coding MGP_C3HHeJ_T0057210.1 MGP_C3HHeJ_G0026192.1 mouse_genomes_project 2 130695629 130698025 + MGP_C3HHeJ_P0057210 protein_coding protein_coding MGP_C3HHeJ_T0057211.1 MGP_C3HHeJ_G0026192.1 mouse_genomes_project 2 130695692 130703240 + MGP_C3HHeJ_P0057211 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057212.1 MGP_C3HHeJ_G0026192.1 mouse_genomes_project 2 130698345 130701001 + MGP_C3HHeJ_P0057212 protein_coding protein_coding MGP_C3HHeJ_T0058775.1 MGP_C3HHeJ_G0026564.1 mouse_genomes_project 2 168052814 168054475 + MGP_C3HHeJ_P0058775 Svs5 protein_coding protein_coding MGP_C3HHeJ_T0058776.1 MGP_C3HHeJ_G0026564.1 mouse_genomes_project 2 168053528 168054475 + MGP_C3HHeJ_P0058776 Svs5 protein_coding protein_coding MGP_C3HHeJ_T0004117.1 MGP_C3HHeJ_G0003631.1 mouse_genomes_project 2 184642487 184644077 + Gm17180 antisense antisense MGP_C3HHeJ_T0007170.1 MGP_C3HHeJ_G0005875.1 mouse_genomes_project 2 82932864 82959459 - Gm28675 lincRNA lincRNA MGP_C3HHeJ_T0001046.1 MGP_C3HHeJ_G0000983.1 mouse_genomes_project 2 37540146 37543626 - TEC TEC MGP_C3HHeJ_T0055382.1 MGP_C3HHeJ_G0025650.1 mouse_genomes_project 2 84783494 84793874 + MGP_C3HHeJ_P0055382 Ssrp1 protein_coding protein_coding MGP_C3HHeJ_T0055383.1 MGP_C3HHeJ_G0025650.1 mouse_genomes_project 2 84783711 84793871 + MGP_C3HHeJ_P0055383 Ssrp1 protein_coding protein_coding MGP_C3HHeJ_T0055384.1 MGP_C3HHeJ_G0025650.1 mouse_genomes_project 2 84783713 84785534 + Ssrp1 protein_coding processed_transcript MGP_C3HHeJ_T0055385.1 MGP_C3HHeJ_G0025650.1 mouse_genomes_project 2 84783715 84792537 + MGP_C3HHeJ_P0055385 Ssrp1 protein_coding protein_coding MGP_C3HHeJ_T0055386.1 MGP_C3HHeJ_G0025650.1 mouse_genomes_project 2 84783793 84786718 + Ssrp1 protein_coding processed_transcript MGP_C3HHeJ_T0055387.1 MGP_C3HHeJ_G0025650.1 mouse_genomes_project 2 84786374 84787285 + Ssrp1 protein_coding processed_transcript MGP_C3HHeJ_T0055388.1 MGP_C3HHeJ_G0025650.1 mouse_genomes_project 2 84787436 84789063 + Ssrp1 protein_coding processed_transcript MGP_C3HHeJ_T0055389.1 MGP_C3HHeJ_G0025650.1 mouse_genomes_project 2 84792015 84793483 + Ssrp1 protein_coding processed_transcript MGP_C3HHeJ_T0055390.1 MGP_C3HHeJ_G0025650.1 mouse_genomes_project 2 84792119 84793050 + Ssrp1 protein_coding processed_transcript MGP_C3HHeJ_T0054183.1 MGP_C3HHeJ_G0025411.1 mouse_genomes_project 2 35138421 35139354 - MGP_C3HHeJ_P0054183 Olfr351 protein_coding protein_coding MGP_C3HHeJ_T0055578.1 MGP_C3HHeJ_G0025811.1 mouse_genomes_project 2 89320360 89321296 - MGP_C3HHeJ_P0055578 Olfr1224-ps1 protein_coding protein_coding MGP_C3HHeJ_T0007211.1 MGP_C3HHeJ_G0005909.1 mouse_genomes_project 2 116195414 116553616 - lincRNA lincRNA MGP_C3HHeJ_T0055586.1 MGP_C3HHeJ_G0025818.1 mouse_genomes_project 2 89475922 89476858 - MGP_C3HHeJ_P0055586 Olfr1232 protein_coding protein_coding MGP_C3HHeJ_T0013417.1 MGP_C3HHeJ_G0011521.1 mouse_genomes_project 2 57917477 57919161 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013498.1 MGP_C3HHeJ_G0011602.1 mouse_genomes_project 2 87169395 87170566 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013367.1 MGP_C3HHeJ_G0011471.1 mouse_genomes_project 2 37930255 37931352 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056156.1 MGP_C3HHeJ_G0025932.1 mouse_genomes_project 2 104788399 104790028 + MGP_C3HHeJ_P0056156 Gm10912 protein_coding protein_coding MGP_C3HHeJ_T0101177.1 MGP_C3HHeJ_G0039326.1 mouse_genomes_project 2 132999029 132999511 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0054276.1 MGP_C3HHeJ_G0025439.1 mouse_genomes_project 2 37271007 37309668 + MGP_C3HHeJ_P0054276 Olfml2a protein_coding protein_coding MGP_C3HHeJ_T0001001.1 MGP_C3HHeJ_G0000938.1 mouse_genomes_project 2 8940850 8941271 + TEC TEC MGP_C3HHeJ_T0057859.1 MGP_C3HHeJ_G0026352.1 mouse_genomes_project 2 153790977 153801055 - Abhd12 protein_coding processed_transcript MGP_C3HHeJ_T0057860.1 MGP_C3HHeJ_G0026352.1 mouse_genomes_project 2 153790977 153863703 - MGP_C3HHeJ_P0057860 Abhd12 protein_coding protein_coding MGP_C3HHeJ_T0057861.1 MGP_C3HHeJ_G0026352.1 mouse_genomes_project 2 153791001 153863693 - MGP_C3HHeJ_P0057861 Abhd12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057862.1 MGP_C3HHeJ_G0026352.1 mouse_genomes_project 2 153791600 153798207 - MGP_C3HHeJ_P0057862 Abhd12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057863.1 MGP_C3HHeJ_G0026352.1 mouse_genomes_project 2 153795843 153863624 - Abhd12 protein_coding processed_transcript MGP_C3HHeJ_T0057864.1 MGP_C3HHeJ_G0026352.1 mouse_genomes_project 2 153801517 153809975 - Abhd12 protein_coding retained_intron MGP_C3HHeJ_T0057865.1 MGP_C3HHeJ_G0026352.1 mouse_genomes_project 2 153804814 153863609 - MGP_C3HHeJ_P0057865 Abhd12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013578.1 MGP_C3HHeJ_G0011682.1 mouse_genomes_project 2 113337479 113338424 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055037.1 MGP_C3HHeJ_G0025572.1 mouse_genomes_project 2 73129824 73177933 - MGP_C3HHeJ_P0055037 Chn1 protein_coding protein_coding MGP_C3HHeJ_T0055038.1 MGP_C3HHeJ_G0025572.1 mouse_genomes_project 2 73129832 73296360 - MGP_C3HHeJ_P0055038 Chn1 protein_coding protein_coding MGP_C3HHeJ_T0055039.1 MGP_C3HHeJ_G0025572.1 mouse_genomes_project 2 73129832 73296360 - MGP_C3HHeJ_P0055039 Chn1 protein_coding protein_coding MGP_C3HHeJ_T0055040.1 MGP_C3HHeJ_G0025572.1 mouse_genomes_project 2 73132256 73236722 - MGP_C3HHeJ_P0055040 Chn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055041.1 MGP_C3HHeJ_G0025572.1 mouse_genomes_project 2 73144078 73173060 - MGP_C3HHeJ_P0055041 Chn1 protein_coding protein_coding MGP_C3HHeJ_T0055042.1 MGP_C3HHeJ_G0025572.1 mouse_genomes_project 2 73144796 73296340 - MGP_C3HHeJ_P0055042 Chn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055043.1 MGP_C3HHeJ_G0025572.1 mouse_genomes_project 2 73196374 73296055 - MGP_C3HHeJ_P0055043 Chn1 protein_coding protein_coding MGP_C3HHeJ_T0053610.1 MGP_C3HHeJ_G0025314.1 mouse_genomes_project 2 28967729 28980045 - MGP_C3HHeJ_P0053610 BC005624 protein_coding protein_coding MGP_C3HHeJ_T0053611.1 MGP_C3HHeJ_G0025314.1 mouse_genomes_project 2 28973077 28978610 - BC005624 protein_coding retained_intron MGP_C3HHeJ_T0053612.1 MGP_C3HHeJ_G0025314.1 mouse_genomes_project 2 28979006 28980305 - BC005624 protein_coding retained_intron MGP_C3HHeJ_T0004099.1 MGP_C3HHeJ_G0003619.1 mouse_genomes_project 2 171977223 171978201 + Gm14236 antisense antisense MGP_C3HHeJ_T0013518.1 MGP_C3HHeJ_G0011622.1 mouse_genomes_project 2 92095087 92096348 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057712.1 MGP_C3HHeJ_G0026307.1 mouse_genomes_project 2 147266108 147274713 - MGP_C3HHeJ_P0057712 Rbbp9 protein_coding protein_coding MGP_C3HHeJ_T0057713.1 MGP_C3HHeJ_G0026307.1 mouse_genomes_project 2 147267664 147274634 - Rbbp9 protein_coding processed_transcript MGP_C3HHeJ_T0054202.1 MGP_C3HHeJ_G0025426.1 mouse_genomes_project 2 35661627 35713004 - MGP_C3HHeJ_P0054202 Rc3h2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054203.1 MGP_C3HHeJ_G0025426.1 mouse_genomes_project 2 35663722 35712914 - MGP_C3HHeJ_P0054203 Rc3h2 protein_coding protein_coding MGP_C3HHeJ_T0054204.1 MGP_C3HHeJ_G0025426.1 mouse_genomes_project 2 35665349 35666061 - Rc3h2 protein_coding retained_intron MGP_C3HHeJ_T0054205.1 MGP_C3HHeJ_G0025426.1 mouse_genomes_project 2 35666301 35669756 - Rc3h2 protein_coding retained_intron MGP_C3HHeJ_T0054206.1 MGP_C3HHeJ_G0025426.1 mouse_genomes_project 2 35676425 35678661 - Rc3h2 protein_coding retained_intron MGP_C3HHeJ_T0054207.1 MGP_C3HHeJ_G0025426.1 mouse_genomes_project 2 35685963 35688661 - Rc3h2 protein_coding retained_intron MGP_C3HHeJ_T0054208.1 MGP_C3HHeJ_G0025426.1 mouse_genomes_project 2 35699680 35704848 - Rc3h2 protein_coding processed_transcript MGP_C3HHeJ_T0054209.1 MGP_C3HHeJ_G0025426.1 mouse_genomes_project 2 35703644 35707123 - Rc3h2 protein_coding retained_intron MGP_C3HHeJ_T0003994.1 MGP_C3HHeJ_G0003539.1 mouse_genomes_project 2 120248316 120251359 + Inafm2 antisense antisense MGP_C3HHeJ_T0055455.1 MGP_C3HHeJ_G0025704.1 mouse_genomes_project 2 86499029 86500305 - MGP_C3HHeJ_P0055455 Olfr1085 protein_coding protein_coding MGP_C3HHeJ_T0013279.1 MGP_C3HHeJ_G0011383.1 mouse_genomes_project 2 8124031 8124452 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056150.1 MGP_C3HHeJ_G0025931.1 mouse_genomes_project 2 104751493 104785824 + MGP_C3HHeJ_P0056150 Fbxo3 protein_coding protein_coding MGP_C3HHeJ_T0056151.1 MGP_C3HHeJ_G0025931.1 mouse_genomes_project 2 104751598 104778601 + MGP_C3HHeJ_P0056151 Fbxo3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0056152.1 MGP_C3HHeJ_G0025931.1 mouse_genomes_project 2 104751610 104780108 + MGP_C3HHeJ_P0056152 Fbxo3 protein_coding protein_coding MGP_C3HHeJ_T0056153.1 MGP_C3HHeJ_G0025931.1 mouse_genomes_project 2 104751612 104785587 + MGP_C3HHeJ_P0056153 Fbxo3 protein_coding protein_coding MGP_C3HHeJ_T0056154.1 MGP_C3HHeJ_G0025931.1 mouse_genomes_project 2 104751614 104780075 + Fbxo3 protein_coding processed_transcript MGP_C3HHeJ_T0056155.1 MGP_C3HHeJ_G0025931.1 mouse_genomes_project 2 104751626 104780089 + MGP_C3HHeJ_P0056155 Fbxo3 protein_coding protein_coding MGP_C3HHeJ_T0054507.1 MGP_C3HHeJ_G0025476.1 mouse_genomes_project 2 56116223 56259489 + Gpd2 protein_coding processed_transcript MGP_C3HHeJ_T0054508.1 MGP_C3HHeJ_G0025476.1 mouse_genomes_project 2 56116266 56262354 + MGP_C3HHeJ_P0054508 Gpd2 protein_coding protein_coding MGP_C3HHeJ_T0054509.1 MGP_C3HHeJ_G0025476.1 mouse_genomes_project 2 56116885 56262354 + MGP_C3HHeJ_P0054509 Gpd2 protein_coding protein_coding MGP_C3HHeJ_T0054510.1 MGP_C3HHeJ_G0025476.1 mouse_genomes_project 2 56116970 56262354 + MGP_C3HHeJ_P0054510 Gpd2 protein_coding protein_coding MGP_C3HHeJ_T0054511.1 MGP_C3HHeJ_G0025476.1 mouse_genomes_project 2 56122982 56189051 + Gpd2 protein_coding processed_transcript MGP_C3HHeJ_T0054512.1 MGP_C3HHeJ_G0025476.1 mouse_genomes_project 2 56145038 56148012 + Gpd2 protein_coding processed_transcript MGP_C3HHeJ_T0054513.1 MGP_C3HHeJ_G0025476.1 mouse_genomes_project 2 56147281 56148012 + Gpd2 protein_coding processed_transcript MGP_C3HHeJ_T0058175.1 MGP_C3HHeJ_G0026444.1 mouse_genomes_project 2 158024630 158310393 + MGP_C3HHeJ_P0058175 a protein_coding protein_coding MGP_C3HHeJ_T0058182.1 MGP_C3HHeJ_G0026444.1 mouse_genomes_project 2 158211617 158308325 + a protein_coding processed_transcript MGP_C3HHeJ_T0058183.1 MGP_C3HHeJ_G0026444.1 mouse_genomes_project 2 158211656 158313677 + MGP_C3HHeJ_P0058183 a protein_coding protein_coding MGP_C3HHeJ_T0058184.1 MGP_C3HHeJ_G0026444.1 mouse_genomes_project 2 158289443 158313298 + MGP_C3HHeJ_P0058184 a protein_coding protein_coding MGP_C3HHeJ_T0058185.1 MGP_C3HHeJ_G0026444.1 mouse_genomes_project 2 158289502 158313678 + MGP_C3HHeJ_P0058185 a protein_coding protein_coding MGP_C3HHeJ_T0058186.1 MGP_C3HHeJ_G0026444.1 mouse_genomes_project 2 158310280 158313677 + a protein_coding retained_intron MGP_C3HHeJ_T0055675.1 MGP_C3HHeJ_G0025855.1 mouse_genomes_project 2 91217113 91221752 + MGP_C3HHeJ_P0055675 C1qtnf4 protein_coding protein_coding MGP_C3HHeJ_T0101926.1 MGP_C3HHeJ_G0039891.1 mouse_genomes_project 2 124263206 124263482 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0053475.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28210440 28226971 + MGP_C3HHeJ_P0053475 Phyhd1 protein_coding protein_coding MGP_C3HHeJ_T0053476.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28210766 28226972 + MGP_C3HHeJ_P0053476 Phyhd1 protein_coding protein_coding MGP_C3HHeJ_T0053477.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28210958 28226971 + MGP_C3HHeJ_P0053477 Phyhd1 protein_coding protein_coding MGP_C3HHeJ_T0053478.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28210972 28225865 + MGP_C3HHeJ_P0053478 Phyhd1 protein_coding protein_coding MGP_C3HHeJ_T0053479.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28211056 28225044 + MGP_C3HHeJ_P0053479 Phyhd1 protein_coding protein_coding MGP_C3HHeJ_T0053480.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28211086 28226960 + MGP_C3HHeJ_P0053480 Phyhd1 protein_coding protein_coding MGP_C3HHeJ_T0053481.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28211088 28224325 + Phyhd1 protein_coding processed_transcript MGP_C3HHeJ_T0053482.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28211093 28225913 + MGP_C3HHeJ_P0053482 Phyhd1 protein_coding protein_coding MGP_C3HHeJ_T0053483.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28211100 28226921 + MGP_C3HHeJ_P0053483 Phyhd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053484.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28211100 28226921 + MGP_C3HHeJ_P0053484 Phyhd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053485.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28221801 28226963 + MGP_C3HHeJ_P0053485 Phyhd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053486.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28224429 28226677 + Phyhd1 protein_coding retained_intron MGP_C3HHeJ_T0053487.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28224476 28225309 + Phyhd1 protein_coding retained_intron MGP_C3HHeJ_T0013404.1 MGP_C3HHeJ_G0011508.1 mouse_genomes_project 2 53214805 53215356 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013724.1 MGP_C3HHeJ_G0011828.1 mouse_genomes_project 2 175096940 175099064 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058115.1 MGP_C3HHeJ_G0026427.1 mouse_genomes_project 2 157374722 157404214 + MGP_C3HHeJ_P0058115 Bpifb1 protein_coding protein_coding MGP_C3HHeJ_T0058116.1 MGP_C3HHeJ_G0026427.1 mouse_genomes_project 2 157374727 157404187 + Bpifb1 protein_coding retained_intron MGP_C3HHeJ_T0058117.1 MGP_C3HHeJ_G0026427.1 mouse_genomes_project 2 157384270 157404188 + MGP_C3HHeJ_P0058117 Bpifb1 protein_coding protein_coding MGP_C3HHeJ_T0017536.1 MGP_C3HHeJ_G0015171.1 mouse_genomes_project 2 27643908 27646240 - processed_transcript processed_transcript MGP_C3HHeJ_T0003901.1 MGP_C3HHeJ_G0003479.1 mouse_genomes_project 2 51148717 51151054 + antisense antisense MGP_C3HHeJ_T0058424.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159744612 159868519 + MGP_C3HHeJ_P0058424 Epb41l1 protein_coding protein_coding MGP_C3HHeJ_T0058425.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159744751 159868519 + MGP_C3HHeJ_P0058425 Epb41l1 protein_coding protein_coding MGP_C3HHeJ_T0058426.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159744755 159827035 + Epb41l1 protein_coding processed_transcript MGP_C3HHeJ_T0058427.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159744787 159847469 + MGP_C3HHeJ_P0058427 Epb41l1 protein_coding protein_coding MGP_C3HHeJ_T0058428.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159744804 159868519 + MGP_C3HHeJ_P0058428 Epb41l1 protein_coding protein_coding MGP_C3HHeJ_T0058429.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159744815 159868519 + MGP_C3HHeJ_P0058429 Epb41l1 protein_coding protein_coding MGP_C3HHeJ_T0058430.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159800637 159824278 + Epb41l1 protein_coding processed_transcript MGP_C3HHeJ_T0058431.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159800924 159868519 + MGP_C3HHeJ_P0058431 Epb41l1 protein_coding protein_coding MGP_C3HHeJ_T0058432.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159818465 159868519 + MGP_C3HHeJ_P0058432 Epb41l1 protein_coding protein_coding MGP_C3HHeJ_T0058433.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159818495 159868519 + MGP_C3HHeJ_P0058433 Epb41l1 protein_coding protein_coding MGP_C3HHeJ_T0058434.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159831002 159838722 + Epb41l1 protein_coding processed_transcript MGP_C3HHeJ_T0058435.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159858947 159865324 + Epb41l1 protein_coding retained_intron MGP_C3HHeJ_T0058436.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159862701 159865664 + Epb41l1 protein_coding processed_transcript MGP_C3HHeJ_T0100437.1 MGP_C3HHeJ_G0038631.1 mouse_genomes_project 2 24658107 24658181 + Gm23969 snoRNA snoRNA MGP_C3HHeJ_T0058009.1 MGP_C3HHeJ_G0026400.1 mouse_genomes_project 2 156032188 156042601 - MGP_C3HHeJ_P0058009 Dusp15 protein_coding protein_coding MGP_C3HHeJ_T0058010.1 MGP_C3HHeJ_G0026400.1 mouse_genomes_project 2 156032213 156035748 - Dusp15 protein_coding retained_intron MGP_C3HHeJ_T0058011.1 MGP_C3HHeJ_G0026400.1 mouse_genomes_project 2 156036124 156042727 - MGP_C3HHeJ_P0058011 Dusp15 protein_coding protein_coding MGP_C3HHeJ_T0058012.1 MGP_C3HHeJ_G0026400.1 mouse_genomes_project 2 156036168 156042843 - MGP_C3HHeJ_P0058012 Dusp15 protein_coding protein_coding MGP_C3HHeJ_T0099210.1 MGP_C3HHeJ_G0037404.1 mouse_genomes_project 2 122765676 122765782 - Gm23858 snRNA snRNA MGP_C3HHeJ_T0056979.1 MGP_C3HHeJ_G0026138.1 mouse_genomes_project 2 124581970 124592997 + MGP_C3HHeJ_P0056979 Bloc1s6 protein_coding protein_coding MGP_C3HHeJ_T0056980.1 MGP_C3HHeJ_G0026138.1 mouse_genomes_project 2 124581980 124589501 + Bloc1s6 protein_coding processed_transcript MGP_C3HHeJ_T0056981.1 MGP_C3HHeJ_G0026138.1 mouse_genomes_project 2 124581986 124591620 + Bloc1s6 protein_coding processed_transcript MGP_C3HHeJ_T0056982.1 MGP_C3HHeJ_G0026138.1 mouse_genomes_project 2 124581994 124582624 + Bloc1s6 protein_coding processed_transcript MGP_C3HHeJ_T0056983.1 MGP_C3HHeJ_G0026138.1 mouse_genomes_project 2 124581997 124589567 + Bloc1s6 protein_coding processed_transcript MGP_C3HHeJ_T0056984.1 MGP_C3HHeJ_G0026138.1 mouse_genomes_project 2 124582026 124590527 + Bloc1s6 protein_coding processed_transcript MGP_C3HHeJ_T0058035.1 MGP_C3HHeJ_G0026405.1 mouse_genomes_project 2 156204482 156248851 + MGP_C3HHeJ_P0058035 Hck protein_coding protein_coding MGP_C3HHeJ_T0058036.1 MGP_C3HHeJ_G0026405.1 mouse_genomes_project 2 156204482 156248853 + MGP_C3HHeJ_P0058036 Hck protein_coding protein_coding MGP_C3HHeJ_T0013553.1 MGP_C3HHeJ_G0011657.1 mouse_genomes_project 2 105354529 105354717 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101878.1 MGP_C3HHeJ_G0039843.1 mouse_genomes_project 2 34597936 34598875 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010278.1 MGP_C3HHeJ_G0008411.1 mouse_genomes_project 2 7716650 7716744 + Mir466n miRNA miRNA MGP_C3HHeJ_T0013463.1 MGP_C3HHeJ_G0011567.1 mouse_genomes_project 2 75200049 75200794 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057426.1 MGP_C3HHeJ_G0026245.1 mouse_genomes_project 2 133400998 133412535 + MGP_C3HHeJ_P0057426 Cdc25b protein_coding protein_coding MGP_C3HHeJ_T0057427.1 MGP_C3HHeJ_G0026245.1 mouse_genomes_project 2 133401007 133412537 + MGP_C3HHeJ_P0057427 Cdc25b protein_coding protein_coding MGP_C3HHeJ_T0057428.1 MGP_C3HHeJ_G0026245.1 mouse_genomes_project 2 133402207 133405964 + Cdc25b protein_coding retained_intron MGP_C3HHeJ_T0057429.1 MGP_C3HHeJ_G0026245.1 mouse_genomes_project 2 133405395 133406148 + Cdc25b protein_coding retained_intron MGP_C3HHeJ_T0057430.1 MGP_C3HHeJ_G0026245.1 mouse_genomes_project 2 133405788 133407438 + Cdc25b protein_coding retained_intron MGP_C3HHeJ_T0057431.1 MGP_C3HHeJ_G0026245.1 mouse_genomes_project 2 133405858 133407325 + Cdc25b protein_coding retained_intron MGP_C3HHeJ_T0057432.1 MGP_C3HHeJ_G0026245.1 mouse_genomes_project 2 133406919 133408452 + Cdc25b protein_coding retained_intron MGP_C3HHeJ_T0013655.1 MGP_C3HHeJ_G0011759.1 mouse_genomes_project 2 150088632 150089114 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013713.1 MGP_C3HHeJ_G0011817.1 mouse_genomes_project 2 169788445 169789007 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100469.1 MGP_C3HHeJ_G0038663.1 mouse_genomes_project 2 95284367 95284499 - Gm26396 snoRNA snoRNA MGP_C3HHeJ_T0057318.1 MGP_C3HHeJ_G0026219.1 mouse_genomes_project 2 132565051 132571852 - MGP_C3HHeJ_P0057318 Cpxm1 protein_coding protein_coding MGP_C3HHeJ_T0057319.1 MGP_C3HHeJ_G0026219.1 mouse_genomes_project 2 132565052 132567553 - Cpxm1 protein_coding retained_intron MGP_C3HHeJ_T0052201.1 MGP_C3HHeJ_G0025073.1 mouse_genomes_project 2 7358365 7461220 + MGP_C3HHeJ_P0052201 Itih5 protein_coding protein_coding MGP_C3HHeJ_T0052705.1 MGP_C3HHeJ_G0025154.1 mouse_genomes_project 2 22731567 22741042 - MGP_C3HHeJ_P0052705 Noxa1 protein_coding protein_coding MGP_C3HHeJ_T0052706.1 MGP_C3HHeJ_G0025154.1 mouse_genomes_project 2 22731567 22741024 - MGP_C3HHeJ_P0052706 Noxa1 protein_coding protein_coding MGP_C3HHeJ_T0010349.1 MGP_C3HHeJ_G0008482.1 mouse_genomes_project 2 93887674 93887753 - Mir7001 miRNA miRNA MGP_C3HHeJ_T0010254.1 MGP_C3HHeJ_G0008387.1 mouse_genomes_project 2 7690762 7690881 + Mir669e miRNA miRNA MGP_C3HHeJ_T0055484.1 MGP_C3HHeJ_G0025732.1 mouse_genomes_project 2 87423436 87424381 + MGP_C3HHeJ_P0055484 Olfr1121 protein_coding protein_coding MGP_C3HHeJ_T0013312.1 MGP_C3HHeJ_G0011416.1 mouse_genomes_project 2 18814818 18815154 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001044.1 MGP_C3HHeJ_G0000981.1 mouse_genomes_project 2 37186667 37188626 - TEC TEC MGP_C3HHeJ_T0001005.1 MGP_C3HHeJ_G0000942.1 mouse_genomes_project 2 10322833 10326069 + TEC TEC MGP_C3HHeJ_T0013423.1 MGP_C3HHeJ_G0011527.1 mouse_genomes_project 2 59084408 59085848 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056673.1 MGP_C3HHeJ_G0026085.1 mouse_genomes_project 2 121942628 121993595 - MGP_C3HHeJ_P0056673 Tmem87a protein_coding protein_coding MGP_C3HHeJ_T0056674.1 MGP_C3HHeJ_G0026085.1 mouse_genomes_project 2 121942628 121993615 - MGP_C3HHeJ_P0056674 Tmem87a protein_coding protein_coding MGP_C3HHeJ_T0056675.1 MGP_C3HHeJ_G0026085.1 mouse_genomes_project 2 121942632 121993621 - Tmem87a protein_coding processed_transcript MGP_C3HHeJ_T0056676.1 MGP_C3HHeJ_G0026085.1 mouse_genomes_project 2 121943267 121993603 - Tmem87a protein_coding processed_transcript MGP_C3HHeJ_T0056677.1 MGP_C3HHeJ_G0026085.1 mouse_genomes_project 2 121951156 121993604 - MGP_C3HHeJ_P0056677 Tmem87a protein_coding protein_coding MGP_C3HHeJ_T0056678.1 MGP_C3HHeJ_G0026085.1 mouse_genomes_project 2 121968511 121993639 - Tmem87a protein_coding processed_transcript MGP_C3HHeJ_T0056679.1 MGP_C3HHeJ_G0026085.1 mouse_genomes_project 2 121969025 121993607 - Tmem87a protein_coding retained_intron MGP_C3HHeJ_T0101936.1 MGP_C3HHeJ_G0039901.1 mouse_genomes_project 2 181517363 181519932 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001011.1 MGP_C3HHeJ_G0000948.1 mouse_genomes_project 2 10573520 10575209 - TEC TEC MGP_C3HHeJ_T0057686.1 MGP_C3HHeJ_G0026301.1 mouse_genomes_project 2 146969480 146978236 + MGP_C3HHeJ_P0057686 Mgme1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0054666.1 MGP_C3HHeJ_G0025501.1 mouse_genomes_project 2 61341546 61426683 - MGP_C3HHeJ_P0054666 Dpp4 protein_coding protein_coding MGP_C3HHeJ_T0054667.1 MGP_C3HHeJ_G0025501.1 mouse_genomes_project 2 61346939 61358328 - Dpp4 protein_coding retained_intron MGP_C3HHeJ_T0054668.1 MGP_C3HHeJ_G0025501.1 mouse_genomes_project 2 61365341 61370794 - Dpp4 protein_coding processed_transcript MGP_C3HHeJ_T0054669.1 MGP_C3HHeJ_G0025501.1 mouse_genomes_project 2 61378659 61392194 - Dpp4 protein_coding retained_intron MGP_C3HHeJ_T0054670.1 MGP_C3HHeJ_G0025501.1 mouse_genomes_project 2 61388198 61426473 - Dpp4 protein_coding retained_intron MGP_C3HHeJ_T0054671.1 MGP_C3HHeJ_G0025501.1 mouse_genomes_project 2 61422153 61426311 - Dpp4 protein_coding processed_transcript MGP_C3HHeJ_T0057093.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128830851 128919789 - MGP_C3HHeJ_P0057093 Trpm7 protein_coding protein_coding MGP_C3HHeJ_T0057094.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128830858 128834815 - Trpm7 protein_coding retained_intron MGP_C3HHeJ_T0057095.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128832103 128841883 - Trpm7 protein_coding retained_intron MGP_C3HHeJ_T0057096.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128832174 128837103 - MGP_C3HHeJ_P0057096 Trpm7 protein_coding protein_coding MGP_C3HHeJ_T0057097.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128836254 128837086 - Trpm7 protein_coding retained_intron MGP_C3HHeJ_T0057098.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128836539 128844315 - Trpm7 protein_coding processed_transcript MGP_C3HHeJ_T0057099.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128855568 128860837 - Trpm7 protein_coding retained_intron MGP_C3HHeJ_T0057100.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128873110 128877741 - Trpm7 protein_coding retained_intron MGP_C3HHeJ_T0057101.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128874708 128919999 - Trpm7 protein_coding retained_intron MGP_C3HHeJ_T0057102.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128874711 128878080 - Trpm7 protein_coding retained_intron MGP_C3HHeJ_T0053176.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 24942829 24989482 - Sardh protein_coding processed_transcript MGP_C3HHeJ_T0053177.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 24942829 25004047 - MGP_C3HHeJ_P0053177 Sardh protein_coding protein_coding MGP_C3HHeJ_T0053178.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 24943633 24948374 - Sardh protein_coding retained_intron MGP_C3HHeJ_T0053179.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 24943818 24966045 - Sardh protein_coding processed_transcript MGP_C3HHeJ_T0053180.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 24952821 24975789 - Sardh protein_coding retained_intron MGP_C3HHeJ_T0053181.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 24967162 24971739 - Sardh protein_coding processed_transcript MGP_C3HHeJ_T0053182.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 24967198 24981989 - Sardh protein_coding retained_intron MGP_C3HHeJ_T0053183.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 24998253 25003629 - MGP_C3HHeJ_P0053183 Sardh protein_coding protein_coding MGP_C3HHeJ_T0053184.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 24998271 25005118 - MGP_C3HHeJ_P0053184 Sardh protein_coding protein_coding MGP_C3HHeJ_T0053185.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 25001070 25004195 - MGP_C3HHeJ_P0053185 Sardh protein_coding protein_coding MGP_C3HHeJ_T0007295.1 MGP_C3HHeJ_G0005976.1 mouse_genomes_project 2 164795089 164795681 - Gm14242 lincRNA lincRNA MGP_C3HHeJ_T0055100.1 MGP_C3HHeJ_G0025588.1 mouse_genomes_project 2 75221756 75228568 + MGP_C3HHeJ_P0055100 Hnrnpa3 protein_coding protein_coding MGP_C3HHeJ_T0055101.1 MGP_C3HHeJ_G0025588.1 mouse_genomes_project 2 75221756 75228568 + MGP_C3HHeJ_P0055101 Hnrnpa3 protein_coding protein_coding MGP_C3HHeJ_T0055102.1 MGP_C3HHeJ_G0025588.1 mouse_genomes_project 2 75221934 75228664 + MGP_C3HHeJ_P0055102 Hnrnpa3 protein_coding protein_coding MGP_C3HHeJ_T0055103.1 MGP_C3HHeJ_G0025588.1 mouse_genomes_project 2 75225620 75228664 + MGP_C3HHeJ_P0055103 Hnrnpa3 protein_coding protein_coding MGP_C3HHeJ_T0059227.1 MGP_C3HHeJ_G0026675.1 mouse_genomes_project 2 177825764 177832561 + MGP_C3HHeJ_P0059227 1700021F07Rik protein_coding protein_coding MGP_C3HHeJ_T0055461.1 MGP_C3HHeJ_G0025710.1 mouse_genomes_project 2 86785113 86786120 - MGP_C3HHeJ_P0055461 protein_coding protein_coding MGP_C3HHeJ_T0056903.1 MGP_C3HHeJ_G0026117.1 mouse_genomes_project 2 123175344 123212922 + MGP_C3HHeJ_P0056903 Wdr76 protein_coding protein_coding MGP_C3HHeJ_T0056904.1 MGP_C3HHeJ_G0026117.1 mouse_genomes_project 2 123175369 123212475 + MGP_C3HHeJ_P0056904 Wdr76 protein_coding protein_coding MGP_C3HHeJ_T0011411.1 MGP_C3HHeJ_G0009544.1 mouse_genomes_project 2 105912118 105912412 - Gm27538 misc_RNA misc_RNA MGP_C3HHeJ_T0004047.1 MGP_C3HHeJ_G0003577.1 mouse_genomes_project 2 149992887 150145901 + antisense antisense MGP_C3HHeJ_T0101877.1 MGP_C3HHeJ_G0039842.1 mouse_genomes_project 2 34576152 34577091 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0055858.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92331708 92380615 - MGP_C3HHeJ_P0055858 Dgkz protein_coding protein_coding MGP_C3HHeJ_T0055859.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92331708 92368771 - MGP_C3HHeJ_P0055859 Dgkz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055860.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92331710 92366841 - MGP_C3HHeJ_P0055860 Dgkz protein_coding protein_coding MGP_C3HHeJ_T0055861.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92331711 92349312 - MGP_C3HHeJ_P0055861 Dgkz protein_coding protein_coding MGP_C3HHeJ_T0055862.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92331711 92368784 - MGP_C3HHeJ_P0055862 Dgkz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055863.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92332120 92332817 - Dgkz protein_coding retained_intron MGP_C3HHeJ_T0055864.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92332268 92333466 - Dgkz protein_coding retained_intron MGP_C3HHeJ_T0055865.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92332326 92334384 - Dgkz protein_coding retained_intron MGP_C3HHeJ_T0055866.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92332339 92333396 - Dgkz protein_coding retained_intron MGP_C3HHeJ_T0055867.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92332665 92334485 - Dgkz protein_coding retained_intron MGP_C3HHeJ_T0055868.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92334791 92336913 - Dgkz protein_coding processed_transcript MGP_C3HHeJ_T0055869.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92339642 92349196 - MGP_C3HHeJ_P0055869 Dgkz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055870.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92339893 92344142 - Dgkz protein_coding processed_transcript MGP_C3HHeJ_T0059484.1 MGP_C3HHeJ_G0026734.1 mouse_genomes_project 2 185913031 185921067 - MGP_C3HHeJ_P0059484 Stmn3 protein_coding protein_coding MGP_C3HHeJ_T0098101.1 MGP_C3HHeJ_G0036313.1 mouse_genomes_project 2 60810230 60810347 + Gm25966 rRNA rRNA MGP_C3HHeJ_T0058739.1 MGP_C3HHeJ_G0026546.1 mouse_genomes_project 2 167417617 167441269 - MGP_C3HHeJ_P0058739 Ada protein_coding protein_coding MGP_C3HHeJ_T0058740.1 MGP_C3HHeJ_G0026546.1 mouse_genomes_project 2 167421046 167421898 - Ada protein_coding processed_transcript MGP_C3HHeJ_T0053489.1 MGP_C3HHeJ_G0025298.1 mouse_genomes_project 2 28229059 28231163 - MGP_C3HHeJ_P0053489 Dolk protein_coding protein_coding MGP_C3HHeJ_T0013339.1 MGP_C3HHeJ_G0011443.1 mouse_genomes_project 2 30502056 30502658 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054771.1 MGP_C3HHeJ_G0025519.1 mouse_genomes_project 2 66660348 66660702 - MGP_C3HHeJ_P0054771 Gm26727 protein_coding protein_coding MGP_C3HHeJ_T0013599.1 MGP_C3HHeJ_G0011703.1 mouse_genomes_project 2 129656828 129657678 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052272.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9037435 9038419 + MGP_C3HHeJ_P0052272 Ankrd16 protein_coding protein_coding MGP_C3HHeJ_T0052273.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9038050 9049602 + MGP_C3HHeJ_P0052273 Ankrd16 protein_coding protein_coding MGP_C3HHeJ_T0052274.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9038083 9049606 + Ankrd16 protein_coding retained_intron MGP_C3HHeJ_T0052275.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9038086 9049580 + Ankrd16 protein_coding retained_intron MGP_C3HHeJ_T0052276.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9038123 9049602 + MGP_C3HHeJ_P0052276 Ankrd16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052277.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9038131 9040824 + Ankrd16 protein_coding retained_intron MGP_C3HHeJ_T0052278.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9039444 9049045 + MGP_C3HHeJ_P0052278 Ankrd16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052279.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9042848 9049597 + Ankrd16 protein_coding retained_intron MGP_C3HHeJ_T0052280.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9042868 9049191 + Ankrd16 protein_coding retained_intron MGP_C3HHeJ_T0052281.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9043764 9049578 + Ankrd16 protein_coding retained_intron MGP_C3HHeJ_T0052282.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9043852 9049573 + MGP_C3HHeJ_P0052282 Ankrd16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052283.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9045717 9049399 + Ankrd16 protein_coding retained_intron MGP_C3HHeJ_T0052406.1 MGP_C3HHeJ_G0025103.1 mouse_genomes_project 2 15438545 15439087 - MGP_C3HHeJ_P0052406 H2afb1 protein_coding protein_coding MGP_C3HHeJ_T0052188.1 MGP_C3HHeJ_G0025070.1 mouse_genomes_project 2 7252955 7278742 - MGP_C3HHeJ_P0052188 Atp5c1 protein_coding protein_coding MGP_C3HHeJ_T0052189.1 MGP_C3HHeJ_G0025070.1 mouse_genomes_project 2 7252969 7278825 - MGP_C3HHeJ_P0052189 Atp5c1 protein_coding protein_coding MGP_C3HHeJ_T0052190.1 MGP_C3HHeJ_G0025070.1 mouse_genomes_project 2 7252969 7278759 - MGP_C3HHeJ_P0052190 Atp5c1 protein_coding protein_coding MGP_C3HHeJ_T0052191.1 MGP_C3HHeJ_G0025070.1 mouse_genomes_project 2 7256531 7278797 - MGP_C3HHeJ_P0052191 Atp5c1 protein_coding protein_coding MGP_C3HHeJ_T0052192.1 MGP_C3HHeJ_G0025070.1 mouse_genomes_project 2 7261673 7278174 - MGP_C3HHeJ_P0052192 Atp5c1 protein_coding protein_coding MGP_C3HHeJ_T0052193.1 MGP_C3HHeJ_G0025070.1 mouse_genomes_project 2 7261817 7278491 - MGP_C3HHeJ_P0052193 Atp5c1 protein_coding protein_coding MGP_C3HHeJ_T0052194.1 MGP_C3HHeJ_G0025070.1 mouse_genomes_project 2 7262499 7278370 - MGP_C3HHeJ_P0052194 Atp5c1 protein_coding protein_coding MGP_C3HHeJ_T0100466.1 MGP_C3HHeJ_G0038660.1 mouse_genomes_project 2 85197008 85197152 + Gm23716 snoRNA snoRNA MGP_C3HHeJ_T0053864.1 MGP_C3HHeJ_G0025350.1 mouse_genomes_project 2 30749428 30785802 + MGP_C3HHeJ_P0053864 Eng protein_coding protein_coding MGP_C3HHeJ_T0053865.1 MGP_C3HHeJ_G0025350.1 mouse_genomes_project 2 30749428 30786342 + MGP_C3HHeJ_P0053865 Eng protein_coding protein_coding MGP_C3HHeJ_T0053866.1 MGP_C3HHeJ_G0025350.1 mouse_genomes_project 2 30749455 30786353 + MGP_C3HHeJ_P0053866 Eng protein_coding protein_coding MGP_C3HHeJ_T0053867.1 MGP_C3HHeJ_G0025350.1 mouse_genomes_project 2 30749826 30753201 + Eng protein_coding processed_transcript MGP_C3HHeJ_T0053868.1 MGP_C3HHeJ_G0025350.1 mouse_genomes_project 2 30776420 30777323 + Eng protein_coding retained_intron MGP_C3HHeJ_T0053869.1 MGP_C3HHeJ_G0025350.1 mouse_genomes_project 2 30776943 30784939 + MGP_C3HHeJ_P0053869 Eng protein_coding protein_coding MGP_C3HHeJ_T0100508.1 MGP_C3HHeJ_G0038702.1 mouse_genomes_project 2 162651664 162651796 + Gm25090 snoRNA snoRNA MGP_C3HHeJ_T0007272.1 MGP_C3HHeJ_G0005957.1 mouse_genomes_project 2 152627432 152682584 - Gm14133 lincRNA lincRNA MGP_C3HHeJ_T0007273.1 MGP_C3HHeJ_G0005957.1 mouse_genomes_project 2 152637358 152682626 - Gm14133 lincRNA lincRNA MGP_C3HHeJ_T0051998.1 MGP_C3HHeJ_G0025037.1 mouse_genomes_project 2 302319 311010 + MGP_C3HHeJ_P0051998 Acbd7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051999.1 MGP_C3HHeJ_G0025037.1 mouse_genomes_project 2 306406 311232 + MGP_C3HHeJ_P0051999 Acbd7 protein_coding protein_coding MGP_C3HHeJ_T0056090.1 MGP_C3HHeJ_G0025923.1 mouse_genomes_project 2 103988103 104027959 - MGP_C3HHeJ_P0056090 Ehf protein_coding protein_coding MGP_C3HHeJ_T0056091.1 MGP_C3HHeJ_G0025923.1 mouse_genomes_project 2 103988695 104027847 - MGP_C3HHeJ_P0056091 Ehf protein_coding protein_coding MGP_C3HHeJ_T0056092.1 MGP_C3HHeJ_G0025923.1 mouse_genomes_project 2 103991181 104008470 - MGP_C3HHeJ_P0056092 Ehf protein_coding protein_coding MGP_C3HHeJ_T0056093.1 MGP_C3HHeJ_G0025923.1 mouse_genomes_project 2 103991378 103998939 - Ehf protein_coding retained_intron MGP_C3HHeJ_T0056094.1 MGP_C3HHeJ_G0025923.1 mouse_genomes_project 2 103991746 104024246 - MGP_C3HHeJ_P0056094 Ehf protein_coding protein_coding MGP_C3HHeJ_T0056095.1 MGP_C3HHeJ_G0025923.1 mouse_genomes_project 2 103998790 104015647 - MGP_C3HHeJ_P0056095 Ehf protein_coding protein_coding MGP_C3HHeJ_T0056096.1 MGP_C3HHeJ_G0025923.1 mouse_genomes_project 2 104001480 104027601 - MGP_C3HHeJ_P0056096 Ehf protein_coding protein_coding MGP_C3HHeJ_T0056097.1 MGP_C3HHeJ_G0025923.1 mouse_genomes_project 2 104003783 104027848 - Ehf protein_coding retained_intron MGP_C3HHeJ_T0013377.1 MGP_C3HHeJ_G0011481.1 mouse_genomes_project 2 44189374 44189787 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001035.1 MGP_C3HHeJ_G0000972.1 mouse_genomes_project 2 34106962 34109950 + TEC TEC MGP_C3HHeJ_T0057752.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148691074 148722103 + MGP_C3HHeJ_P0057752 protein_coding protein_coding MGP_C3HHeJ_T0057753.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148691074 148797506 + MGP_C3HHeJ_P0057753 protein_coding protein_coding MGP_C3HHeJ_T0057754.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148691095 148724077 + MGP_C3HHeJ_P0057754 protein_coding protein_coding MGP_C3HHeJ_T0057755.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148691095 148721331 + MGP_C3HHeJ_P0057755 protein_coding protein_coding MGP_C3HHeJ_T0057756.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148691098 148721186 + MGP_C3HHeJ_P0057756 protein_coding protein_coding MGP_C3HHeJ_T0057757.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148691104 148966620 + MGP_C3HHeJ_P0057757 protein_coding protein_coding MGP_C3HHeJ_T0057758.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148691106 148711501 + MGP_C3HHeJ_P0057758 protein_coding protein_coding MGP_C3HHeJ_T0057759.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148795931 148852448 + protein_coding processed_transcript MGP_C3HHeJ_T0057760.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148799749 148886031 + protein_coding retained_intron MGP_C3HHeJ_T0057761.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148799881 148886162 + MGP_C3HHeJ_P0057761 protein_coding protein_coding MGP_C3HHeJ_T0057762.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148801705 148966616 + protein_coding processed_transcript MGP_C3HHeJ_T0057763.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148909192 148966539 + protein_coding processed_transcript MGP_C3HHeJ_T0057764.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148965843 148966616 + protein_coding processed_transcript MGP_C3HHeJ_T0057765.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148966191 148966374 + MGP_C3HHeJ_P0057765 protein_coding protein_coding MGP_C3HHeJ_T0013543.1 MGP_C3HHeJ_G0011647.1 mouse_genomes_project 2 102900023 102900992 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054186.1 MGP_C3HHeJ_G0025414.1 mouse_genomes_project 2 35187901 35188855 + MGP_C3HHeJ_P0054186 Olfr354 protein_coding protein_coding MGP_C3HHeJ_T0058912.1 MGP_C3HHeJ_G0026604.1 mouse_genomes_project 2 168829015 168837123 + MGP_C3HHeJ_P0058912 Cd40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058913.1 MGP_C3HHeJ_G0026604.1 mouse_genomes_project 2 168829015 168850285 + MGP_C3HHeJ_P0058913 Cd40 protein_coding protein_coding MGP_C3HHeJ_T0058914.1 MGP_C3HHeJ_G0026604.1 mouse_genomes_project 2 168829024 168848990 + MGP_C3HHeJ_P0058914 Cd40 protein_coding protein_coding MGP_C3HHeJ_T0058915.1 MGP_C3HHeJ_G0026604.1 mouse_genomes_project 2 168829068 168848081 + MGP_C3HHeJ_P0058915 Cd40 protein_coding protein_coding MGP_C3HHeJ_T0058916.1 MGP_C3HHeJ_G0026604.1 mouse_genomes_project 2 168829069 168837180 + MGP_C3HHeJ_P0058916 Cd40 protein_coding protein_coding MGP_C3HHeJ_T0058917.1 MGP_C3HHeJ_G0026604.1 mouse_genomes_project 2 168829092 168848336 + MGP_C3HHeJ_P0058917 Cd40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058918.1 MGP_C3HHeJ_G0026604.1 mouse_genomes_project 2 168837075 168841103 + Cd40 protein_coding retained_intron MGP_C3HHeJ_T0010404.1 MGP_C3HHeJ_G0008537.1 mouse_genomes_project 2 178594769 178594848 - Mir296 miRNA miRNA MGP_C3HHeJ_T0099195.1 MGP_C3HHeJ_G0037389.1 mouse_genomes_project 2 70849093 70849194 - Gm23166 snRNA snRNA MGP_C3HHeJ_T0003835.1 MGP_C3HHeJ_G0003428.1 mouse_genomes_project 2 16941672 16944552 - Gm13344 antisense antisense MGP_C3HHeJ_T0055974.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94317659 94335301 - MGP_C3HHeJ_P0055974 Accs protein_coding protein_coding MGP_C3HHeJ_T0055975.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94319641 94335045 - MGP_C3HHeJ_P0055975 Accs protein_coding protein_coding MGP_C3HHeJ_T0055976.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94319641 94335165 - MGP_C3HHeJ_P0055976 Accs protein_coding protein_coding MGP_C3HHeJ_T0055977.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94320191 94323559 - Accs protein_coding retained_intron MGP_C3HHeJ_T0055978.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94321222 94335303 - Accs protein_coding retained_intron MGP_C3HHeJ_T0055979.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94322214 94333306 - MGP_C3HHeJ_P0055979 Accs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055980.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94323392 94327693 - Accs protein_coding retained_intron MGP_C3HHeJ_T0055981.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94326704 94327806 - Accs protein_coding retained_intron MGP_C3HHeJ_T0055982.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94327991 94335182 - MGP_C3HHeJ_P0055982 Accs protein_coding protein_coding MGP_C3HHeJ_T0055983.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94328220 94335299 - Accs protein_coding retained_intron MGP_C3HHeJ_T0055984.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94328231 94335299 - Accs protein_coding retained_intron MGP_C3HHeJ_T0055075.1 MGP_C3HHeJ_G0025576.1 mouse_genomes_project 2 74175290 74181980 - MGP_C3HHeJ_P0055075 Evx2 protein_coding protein_coding MGP_C3HHeJ_T0055076.1 MGP_C3HHeJ_G0025576.1 mouse_genomes_project 2 74178045 74181842 - MGP_C3HHeJ_P0055076 Evx2 protein_coding protein_coding MGP_C3HHeJ_T0010287.1 MGP_C3HHeJ_G0008420.1 mouse_genomes_project 2 7721046 7721171 + Mir669h miRNA miRNA MGP_C3HHeJ_T0100484.1 MGP_C3HHeJ_G0038678.1 mouse_genomes_project 2 132449288 132449356 + Snord110 snoRNA snoRNA MGP_C3HHeJ_T0059370.1 MGP_C3HHeJ_G0026711.1 mouse_genomes_project 2 185054901 185116033 + MGP_C3HHeJ_P0059370 Ntsr1 protein_coding protein_coding MGP_C3HHeJ_T0059371.1 MGP_C3HHeJ_G0026711.1 mouse_genomes_project 2 185055152 185115272 + MGP_C3HHeJ_P0059371 Ntsr1 protein_coding protein_coding MGP_C3HHeJ_T0101879.1 MGP_C3HHeJ_G0039844.1 mouse_genomes_project 2 34611508 34611961 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0058158.1 MGP_C3HHeJ_G0026440.1 mouse_genomes_project 2 157830745 157867446 + MGP_C3HHeJ_P0058158 Zfp341 protein_coding protein_coding MGP_C3HHeJ_T0058159.1 MGP_C3HHeJ_G0026440.1 mouse_genomes_project 2 157830804 157867403 + MGP_C3HHeJ_P0058159 Zfp341 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058160.1 MGP_C3HHeJ_G0026440.1 mouse_genomes_project 2 157830818 157867403 + MGP_C3HHeJ_P0058160 Zfp341 protein_coding protein_coding MGP_C3HHeJ_T0057926.1 MGP_C3HHeJ_G0026366.1 mouse_genomes_project 2 155019960 155030780 - MGP_C3HHeJ_P0057926 Fam110a protein_coding protein_coding MGP_C3HHeJ_T0057927.1 MGP_C3HHeJ_G0026366.1 mouse_genomes_project 2 155019960 155024498 - MGP_C3HHeJ_P0057927 Fam110a protein_coding protein_coding MGP_C3HHeJ_T0057928.1 MGP_C3HHeJ_G0026366.1 mouse_genomes_project 2 155019960 155024529 - MGP_C3HHeJ_P0057928 Fam110a protein_coding protein_coding MGP_C3HHeJ_T0057929.1 MGP_C3HHeJ_G0026366.1 mouse_genomes_project 2 155020299 155023957 - MGP_C3HHeJ_P0057929 Fam110a protein_coding protein_coding MGP_C3HHeJ_T0055525.1 MGP_C3HHeJ_G0025763.1 mouse_genomes_project 2 88056717 88057656 - MGP_C3HHeJ_P0055525 Olfr1157 protein_coding protein_coding MGP_C3HHeJ_T0100453.1 MGP_C3HHeJ_G0038647.1 mouse_genomes_project 2 48054619 48054740 - Gm25215 snoRNA snoRNA MGP_C3HHeJ_T0054429.1 MGP_C3HHeJ_G0025459.1 mouse_genomes_project 2 49823387 49841886 - MGP_C3HHeJ_P0054429 Rnd3 protein_coding protein_coding MGP_C3HHeJ_T0054430.1 MGP_C3HHeJ_G0025459.1 mouse_genomes_project 2 49830048 49842100 - Rnd3 protein_coding retained_intron MGP_C3HHeJ_T0099200.1 MGP_C3HHeJ_G0037394.1 mouse_genomes_project 2 80295515 80295618 + Gm24461 snRNA snRNA MGP_C3HHeJ_T0099172.1 MGP_C3HHeJ_G0037366.1 mouse_genomes_project 2 1372344 1372451 - Gm23691 snRNA snRNA MGP_C3HHeJ_T0099216.1 MGP_C3HHeJ_G0037410.1 mouse_genomes_project 2 134993758 134993861 + Gm22245 snRNA snRNA MGP_C3HHeJ_T0055459.1 MGP_C3HHeJ_G0025708.1 mouse_genomes_project 2 86736915 86737857 - MGP_C3HHeJ_P0055459 Olfr1090 protein_coding protein_coding MGP_C3HHeJ_T0054250.1 MGP_C3HHeJ_G0025434.1 mouse_genomes_project 2 36653693 36668217 + Lhx2 protein_coding retained_intron MGP_C3HHeJ_T0054251.1 MGP_C3HHeJ_G0025434.1 mouse_genomes_project 2 36655301 36669349 + MGP_C3HHeJ_P0054251 Lhx2 protein_coding protein_coding MGP_C3HHeJ_T0054252.1 MGP_C3HHeJ_G0025434.1 mouse_genomes_project 2 36666291 36669155 + MGP_C3HHeJ_P0054252 Lhx2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054253.1 MGP_C3HHeJ_G0025434.1 mouse_genomes_project 2 36666297 36685039 + MGP_C3HHeJ_P0054253 Lhx2 protein_coding protein_coding MGP_C3HHeJ_T0054254.1 MGP_C3HHeJ_G0025434.1 mouse_genomes_project 2 36667055 36669097 + MGP_C3HHeJ_P0054254 Lhx2 protein_coding protein_coding MGP_C3HHeJ_T0054255.1 MGP_C3HHeJ_G0025434.1 mouse_genomes_project 2 36668325 36674522 + Lhx2 protein_coding retained_intron MGP_C3HHeJ_T0007150.1 MGP_C3HHeJ_G0005859.1 mouse_genomes_project 2 73837451 73846226 - 4930441J16Rik lincRNA lincRNA MGP_C3HHeJ_T0052180.1 MGP_C3HHeJ_G0025067.1 mouse_genomes_project 2 7066474 7069144 + MGP_C3HHeJ_P0052180 4930412O13Rik protein_coding protein_coding MGP_C3HHeJ_T0052181.1 MGP_C3HHeJ_G0025067.1 mouse_genomes_project 2 7067858 7068558 + MGP_C3HHeJ_P0052181 4930412O13Rik protein_coding protein_coding MGP_C3HHeJ_T0007197.1 MGP_C3HHeJ_G0005896.1 mouse_genomes_project 2 104062569 104096623 - A930006I01Rik lincRNA lincRNA MGP_C3HHeJ_T0053059.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24198082 24243981 - MGP_C3HHeJ_P0053059 Notch1 protein_coding protein_coding MGP_C3HHeJ_T0053060.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24202397 24202927 - Notch1 protein_coding processed_transcript MGP_C3HHeJ_T0053061.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24205650 24207793 - Notch1 protein_coding processed_transcript MGP_C3HHeJ_T0053062.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24205650 24206974 - Notch1 protein_coding processed_transcript MGP_C3HHeJ_T0053063.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24205650 24206834 - Notch1 protein_coding processed_transcript MGP_C3HHeJ_T0053064.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24205650 24206547 - Notch1 protein_coding processed_transcript MGP_C3HHeJ_T0053065.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24205650 24206343 - Notch1 protein_coding processed_transcript MGP_C3HHeJ_T0053066.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24208722 24209929 - Notch1 protein_coding processed_transcript MGP_C3HHeJ_T0053067.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24210004 24210678 - Notch1 protein_coding processed_transcript MGP_C3HHeJ_T0053068.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24211455 24256771 - MGP_C3HHeJ_P0053068 Notch1 protein_coding protein_coding MGP_C3HHeJ_T0053069.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24238313 24243983 - Notch1 protein_coding retained_intron MGP_C3HHeJ_T0013676.1 MGP_C3HHeJ_G0011780.1 mouse_genomes_project 2 156545353 156545635 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001051.1 MGP_C3HHeJ_G0000988.1 mouse_genomes_project 2 68243780 68245273 + TEC TEC MGP_C3HHeJ_T0054691.1 MGP_C3HHeJ_G0025506.1 mouse_genomes_project 2 61718583 62232566 - MGP_C3HHeJ_P0054691 Kcnh7 protein_coding protein_coding MGP_C3HHeJ_T0054692.1 MGP_C3HHeJ_G0025506.1 mouse_genomes_project 2 61822341 62232575 - MGP_C3HHeJ_P0054692 Kcnh7 protein_coding protein_coding MGP_C3HHeJ_T0054693.1 MGP_C3HHeJ_G0025506.1 mouse_genomes_project 2 61822427 62232458 - MGP_C3HHeJ_P0054693 Kcnh7 protein_coding protein_coding MGP_C3HHeJ_T0054694.1 MGP_C3HHeJ_G0025506.1 mouse_genomes_project 2 62229756 62232550 - Kcnh7 protein_coding processed_transcript MGP_C3HHeJ_T0013305.1 MGP_C3HHeJ_G0011409.1 mouse_genomes_project 2 16263549 16264330 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055425.1 MGP_C3HHeJ_G0025676.1 mouse_genomes_project 2 85717257 85718196 + MGP_C3HHeJ_P0055425 Olfr1025-ps1 protein_coding protein_coding MGP_C3HHeJ_T0055426.1 MGP_C3HHeJ_G0025676.1 mouse_genomes_project 2 85717257 85718178 + MGP_C3HHeJ_P0055426 Olfr1025-ps1 protein_coding protein_coding MGP_C3HHeJ_T0055536.1 MGP_C3HHeJ_G0025773.1 mouse_genomes_project 2 88345317 88346504 - MGP_C3HHeJ_P0055536 Olfr1167 protein_coding protein_coding MGP_C3HHeJ_T0059177.1 MGP_C3HHeJ_G0026655.1 mouse_genomes_project 2 174698506 174720614 - MGP_C3HHeJ_P0059177 4930470P17Rik protein_coding protein_coding MGP_C3HHeJ_T0007353.1 MGP_C3HHeJ_G0006027.1 mouse_genomes_project 2 185436965 185438355 + Gm14339 lincRNA lincRNA MGP_C3HHeJ_T0003980.1 MGP_C3HHeJ_G0003530.1 mouse_genomes_project 2 111002512 111024548 - Ccdc34os antisense antisense MGP_C3HHeJ_T0003981.1 MGP_C3HHeJ_G0003530.1 mouse_genomes_project 2 111002513 111024551 - Ccdc34os antisense antisense MGP_C3HHeJ_T0052868.1 MGP_C3HHeJ_G0025184.1 mouse_genomes_project 2 23172046 23175113 - MGP_C3HHeJ_P0052868 Lcn12 protein_coding protein_coding MGP_C3HHeJ_T0052869.1 MGP_C3HHeJ_G0025184.1 mouse_genomes_project 2 23172048 23174634 - MGP_C3HHeJ_P0052869 Lcn12 protein_coding protein_coding MGP_C3HHeJ_T0007292.1 MGP_C3HHeJ_G0005973.1 mouse_genomes_project 2 163566958 163593047 + 9130015L21Rik lincRNA lincRNA MGP_C3HHeJ_T0013563.1 MGP_C3HHeJ_G0011667.1 mouse_genomes_project 2 109387034 109387662 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007227.1 MGP_C3HHeJ_G0005920.1 mouse_genomes_project 2 119272466 119278633 - Gm13985 lincRNA lincRNA MGP_C3HHeJ_T0056139.1 MGP_C3HHeJ_G0025929.1 mouse_genomes_project 2 104688651 104711125 + MGP_C3HHeJ_P0056139 Lmo2 protein_coding protein_coding MGP_C3HHeJ_T0056140.1 MGP_C3HHeJ_G0025929.1 mouse_genomes_project 2 104688660 104711953 + MGP_C3HHeJ_P0056140 Lmo2 protein_coding protein_coding MGP_C3HHeJ_T0056142.1 MGP_C3HHeJ_G0025929.1 mouse_genomes_project 2 104699614 104711167 + MGP_C3HHeJ_P0056142 Lmo2 protein_coding protein_coding MGP_C3HHeJ_T0056143.1 MGP_C3HHeJ_G0025929.1 mouse_genomes_project 2 104700198 104711930 + MGP_C3HHeJ_P0056143 Lmo2 protein_coding protein_coding MGP_C3HHeJ_T0056144.1 MGP_C3HHeJ_G0025929.1 mouse_genomes_project 2 104700210 104706219 + MGP_C3HHeJ_P0056144 Lmo2 protein_coding protein_coding MGP_C3HHeJ_T0056145.1 MGP_C3HHeJ_G0025929.1 mouse_genomes_project 2 104700292 104711949 + MGP_C3HHeJ_P0056145 Lmo2 protein_coding protein_coding MGP_C3HHeJ_T0056146.1 MGP_C3HHeJ_G0025929.1 mouse_genomes_project 2 104700313 104711914 + MGP_C3HHeJ_P0056146 Lmo2 protein_coding protein_coding MGP_C3HHeJ_T0056147.1 MGP_C3HHeJ_G0025929.1 mouse_genomes_project 2 104701248 104710991 + Lmo2 protein_coding processed_transcript MGP_C3HHeJ_T0003907.1 MGP_C3HHeJ_G0003483.1 mouse_genomes_project 2 59376590 59377645 + Gm13580 antisense antisense MGP_C3HHeJ_T0056767.1 MGP_C3HHeJ_G0026096.1 mouse_genomes_project 2 122603360 122636199 + MGP_C3HHeJ_P0056767 Tmem62 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056768.1 MGP_C3HHeJ_G0026096.1 mouse_genomes_project 2 122603642 122636191 + MGP_C3HHeJ_P0056768 Tmem62 protein_coding protein_coding MGP_C3HHeJ_T0056769.1 MGP_C3HHeJ_G0026096.1 mouse_genomes_project 2 122604013 122606885 + Tmem62 protein_coding retained_intron MGP_C3HHeJ_T0056770.1 MGP_C3HHeJ_G0026096.1 mouse_genomes_project 2 122607349 122617798 + Tmem62 protein_coding processed_transcript MGP_C3HHeJ_T0056771.1 MGP_C3HHeJ_G0026096.1 mouse_genomes_project 2 122610635 122613224 + Tmem62 protein_coding processed_transcript MGP_C3HHeJ_T0056772.1 MGP_C3HHeJ_G0026096.1 mouse_genomes_project 2 122623704 122635390 + Tmem62 protein_coding retained_intron MGP_C3HHeJ_T0058790.1 MGP_C3HHeJ_G0026569.1 mouse_genomes_project 2 168181111 168184929 + Sys1 protein_coding processed_transcript MGP_C3HHeJ_T0058791.1 MGP_C3HHeJ_G0026569.1 mouse_genomes_project 2 168181123 168189466 + MGP_C3HHeJ_P0058791 Sys1 protein_coding protein_coding MGP_C3HHeJ_T0058792.1 MGP_C3HHeJ_G0026569.1 mouse_genomes_project 2 168181235 168185301 + Sys1 protein_coding processed_transcript MGP_C3HHeJ_T0058794.1 MGP_C3HHeJ_G0026569.1 mouse_genomes_project 2 168184963 168189462 + MGP_C3HHeJ_P0058794 Sys1 protein_coding protein_coding MGP_C3HHeJ_T0058795.1 MGP_C3HHeJ_G0026569.1 mouse_genomes_project 2 168184992 168198412 + MGP_C3HHeJ_P0058795 Sys1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058796.1 MGP_C3HHeJ_G0026569.1 mouse_genomes_project 2 168185045 168203454 + MGP_C3HHeJ_P0058796 Sys1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058797.1 MGP_C3HHeJ_G0026569.1 mouse_genomes_project 2 168185301 168198412 + MGP_C3HHeJ_P0058797 Sys1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010388.1 MGP_C3HHeJ_G0008521.1 mouse_genomes_project 2 161699381 161699443 - Mir7685 miRNA miRNA MGP_C3HHeJ_T0057308.1 MGP_C3HHeJ_G0026217.1 mouse_genomes_project 2 132453570 132458788 - MGP_C3HHeJ_P0057308 Idh3b protein_coding protein_coding MGP_C3HHeJ_T0057309.1 MGP_C3HHeJ_G0026217.1 mouse_genomes_project 2 132453573 132454802 - MGP_C3HHeJ_P0057309 Idh3b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057310.1 MGP_C3HHeJ_G0026217.1 mouse_genomes_project 2 132456391 132458675 - Idh3b protein_coding retained_intron MGP_C3HHeJ_T0057311.1 MGP_C3HHeJ_G0026217.1 mouse_genomes_project 2 132457903 132458656 - Idh3b protein_coding retained_intron MGP_C3HHeJ_T0097895.1 MGP_C3HHeJ_G0036107.1 mouse_genomes_project 2 92318640 92319041 - pseudogene pseudogene MGP_C3HHeJ_T0054009.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32874840 32962906 - MGP_C3HHeJ_P0054009 Gapvd1 protein_coding protein_coding MGP_C3HHeJ_T0054010.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32876422 32962195 - MGP_C3HHeJ_P0054010 Gapvd1 protein_coding protein_coding MGP_C3HHeJ_T0054011.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32877231 32962300 - MGP_C3HHeJ_P0054011 Gapvd1 protein_coding protein_coding MGP_C3HHeJ_T0054012.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32877231 32962300 - MGP_C3HHeJ_P0054012 Gapvd1 protein_coding protein_coding MGP_C3HHeJ_T0054013.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32877729 32908944 - MGP_C3HHeJ_P0054013 Gapvd1 protein_coding protein_coding MGP_C3HHeJ_T0054014.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32878140 32882890 - MGP_C3HHeJ_P0054014 Gapvd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054015.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32894121 32909204 - Gapvd1 protein_coding processed_transcript MGP_C3HHeJ_T0054016.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32898849 32905683 - Gapvd1 protein_coding retained_intron MGP_C3HHeJ_T0054017.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32904453 32935874 - MGP_C3HHeJ_P0054017 Gapvd1 protein_coding protein_coding MGP_C3HHeJ_T0054018.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32904474 32935777 - MGP_C3HHeJ_P0054018 Gapvd1 protein_coding protein_coding MGP_C3HHeJ_T0054019.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32908860 32917716 - MGP_C3HHeJ_P0054019 Gapvd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054020.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32908904 32917831 - Gapvd1 protein_coding processed_transcript MGP_C3HHeJ_T0054021.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32914725 32918227 - Gapvd1 protein_coding retained_intron MGP_C3HHeJ_T0054022.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32933244 32962164 - Gapvd1 protein_coding retained_intron MGP_C3HHeJ_T0054023.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32935847 32962150 - MGP_C3HHeJ_P0054023 Gapvd1 protein_coding protein_coding MGP_C3HHeJ_T0017690.1 MGP_C3HHeJ_G0015251.1 mouse_genomes_project 2 166297394 166305201 + 9430021M05Rik processed_transcript processed_transcript MGP_C3HHeJ_T0004010.1 MGP_C3HHeJ_G0003552.1 mouse_genomes_project 2 131312097 131315628 - antisense antisense MGP_C3HHeJ_T0101905.1 MGP_C3HHeJ_G0039870.1 mouse_genomes_project 2 87593346 87594202 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007319.1 MGP_C3HHeJ_G0005996.1 mouse_genomes_project 2 171781732 171788571 - 1200007C13Rik lincRNA lincRNA MGP_C3HHeJ_T0052463.1 MGP_C3HHeJ_G0025113.1 mouse_genomes_project 2 16710252 16820026 + MGP_C3HHeJ_P0052463 Armc3 protein_coding protein_coding MGP_C3HHeJ_T0052464.1 MGP_C3HHeJ_G0025113.1 mouse_genomes_project 2 16710252 16820026 + MGP_C3HHeJ_P0052464 Armc3 protein_coding protein_coding MGP_C3HHeJ_T0003811.1 MGP_C3HHeJ_G0003410.1 mouse_genomes_project 2 736192 738384 - Gm13185 antisense antisense MGP_C3HHeJ_T0100501.1 MGP_C3HHeJ_G0038695.1 mouse_genomes_project 2 158942021 158942154 - Gm22334 snoRNA snoRNA MGP_C3HHeJ_T0059056.1 MGP_C3HHeJ_G0026628.1 mouse_genomes_project 2 171105601 171157989 - MGP_C3HHeJ_P0059056 Ptgis protein_coding protein_coding MGP_C3HHeJ_T0059057.1 MGP_C3HHeJ_G0026628.1 mouse_genomes_project 2 171117686 171158004 - MGP_C3HHeJ_P0059057 Ptgis protein_coding protein_coding MGP_C3HHeJ_T0059058.1 MGP_C3HHeJ_G0026628.1 mouse_genomes_project 2 171121301 171123196 - Ptgis protein_coding retained_intron MGP_C3HHeJ_T0007274.1 MGP_C3HHeJ_G0005958.1 mouse_genomes_project 2 153685845 153686483 - Gm28450 lincRNA lincRNA MGP_C3HHeJ_T0054113.1 MGP_C3HHeJ_G0025387.1 mouse_genomes_project 2 33584671 33598857 - MGP_C3HHeJ_P0054113 4930568D16Rik protein_coding protein_coding MGP_C3HHeJ_T0055854.1 MGP_C3HHeJ_G0025879.1 mouse_genomes_project 2 92325358 92326798 + MGP_C3HHeJ_P0055854 Chrm4 protein_coding protein_coding MGP_C3HHeJ_T0007277.1 MGP_C3HHeJ_G0005961.1 mouse_genomes_project 2 154875060 154878102 + Gm14155 lincRNA lincRNA MGP_C3HHeJ_T0055587.1 MGP_C3HHeJ_G0025819.1 mouse_genomes_project 2 89489960 89490878 - MGP_C3HHeJ_P0055587 Olfr1233 protein_coding protein_coding MGP_C3HHeJ_T0054256.1 MGP_C3HHeJ_G0025435.1 mouse_genomes_project 2 36831455 36915097 + MGP_C3HHeJ_P0054256 Nek6 protein_coding protein_coding MGP_C3HHeJ_T0054257.1 MGP_C3HHeJ_G0025435.1 mouse_genomes_project 2 36831480 36907967 + MGP_C3HHeJ_P0054257 Nek6 protein_coding protein_coding MGP_C3HHeJ_T0054258.1 MGP_C3HHeJ_G0025435.1 mouse_genomes_project 2 36831626 36906258 + MGP_C3HHeJ_P0054258 Nek6 protein_coding protein_coding MGP_C3HHeJ_T0054259.1 MGP_C3HHeJ_G0025435.1 mouse_genomes_project 2 36834393 36880669 + MGP_C3HHeJ_P0054259 Nek6 protein_coding protein_coding MGP_C3HHeJ_T0054260.1 MGP_C3HHeJ_G0025435.1 mouse_genomes_project 2 36834438 36883749 + MGP_C3HHeJ_P0054260 Nek6 protein_coding protein_coding MGP_C3HHeJ_T0057512.1 MGP_C3HHeJ_G0026261.1 mouse_genomes_project 2 134596895 134645382 - MGP_C3HHeJ_P0057512 Prokr2 protein_coding protein_coding MGP_C3HHeJ_T0057513.1 MGP_C3HHeJ_G0026261.1 mouse_genomes_project 2 134630292 134645380 - MGP_C3HHeJ_P0057513 Prokr2 protein_coding protein_coding MGP_C3HHeJ_T0057514.1 MGP_C3HHeJ_G0026261.1 mouse_genomes_project 2 134630292 134645355 - MGP_C3HHeJ_P0057514 Prokr2 protein_coding protein_coding MGP_C3HHeJ_T0057515.1 MGP_C3HHeJ_G0026261.1 mouse_genomes_project 2 134631144 134645402 - MGP_C3HHeJ_P0057515 Prokr2 protein_coding protein_coding MGP_C3HHeJ_T0057516.1 MGP_C3HHeJ_G0026261.1 mouse_genomes_project 2 134641524 134645376 - MGP_C3HHeJ_P0057516 Prokr2 protein_coding protein_coding MGP_C3HHeJ_T0013625.1 MGP_C3HHeJ_G0011729.1 mouse_genomes_project 2 137082191 137082504 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052644.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22554005 22565531 - MGP_C3HHeJ_P0052644 Arrdc1 protein_coding protein_coding MGP_C3HHeJ_T0052645.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22554005 22565442 - MGP_C3HHeJ_P0052645 Arrdc1 protein_coding protein_coding MGP_C3HHeJ_T0052646.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22554008 22565424 - Arrdc1 protein_coding retained_intron MGP_C3HHeJ_T0052647.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22554642 22565446 - MGP_C3HHeJ_P0052647 Arrdc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052648.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22554708 22565424 - Arrdc1 protein_coding retained_intron MGP_C3HHeJ_T0052649.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22554811 22565421 - MGP_C3HHeJ_P0052649 Arrdc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052650.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22554836 22555854 - Arrdc1 protein_coding retained_intron MGP_C3HHeJ_T0052651.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22554976 22565453 - MGP_C3HHeJ_P0052651 Arrdc1 protein_coding protein_coding MGP_C3HHeJ_T0052652.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22555325 22556557 - Arrdc1 protein_coding retained_intron MGP_C3HHeJ_T0052653.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22555565 22565333 - MGP_C3HHeJ_P0052653 Arrdc1 protein_coding protein_coding MGP_C3HHeJ_T0052654.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22555648 22556785 - Arrdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052655.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22555938 22565467 - Arrdc1 protein_coding retained_intron MGP_C3HHeJ_T0013608.1 MGP_C3HHeJ_G0011712.1 mouse_genomes_project 2 132574712 132575545 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017620.1 MGP_C3HHeJ_G0015220.1 mouse_genomes_project 2 119323771 119584180 - Gm13986 processed_transcript processed_transcript MGP_C3HHeJ_T0017621.1 MGP_C3HHeJ_G0015220.1 mouse_genomes_project 2 119542967 119584069 - Gm13986 processed_transcript processed_transcript MGP_C3HHeJ_T0052003.1 MGP_C3HHeJ_G0025039.1 mouse_genomes_project 2 381063 394663 - MGP_C3HHeJ_P0052003 Meig1 protein_coding protein_coding MGP_C3HHeJ_T0052004.1 MGP_C3HHeJ_G0025039.1 mouse_genomes_project 2 381063 391034 - MGP_C3HHeJ_P0052004 Meig1 protein_coding protein_coding MGP_C3HHeJ_T0052005.1 MGP_C3HHeJ_G0025039.1 mouse_genomes_project 2 381066 391056 - MGP_C3HHeJ_P0052005 Meig1 protein_coding protein_coding MGP_C3HHeJ_T0052006.1 MGP_C3HHeJ_G0025039.1 mouse_genomes_project 2 381067 391144 - MGP_C3HHeJ_P0052006 Meig1 protein_coding protein_coding MGP_C3HHeJ_T0052007.1 MGP_C3HHeJ_G0025039.1 mouse_genomes_project 2 381130 390596 - MGP_C3HHeJ_P0052007 Meig1 protein_coding protein_coding MGP_C3HHeJ_T0052008.1 MGP_C3HHeJ_G0025039.1 mouse_genomes_project 2 381287 394609 - MGP_C3HHeJ_P0052008 Meig1 protein_coding protein_coding MGP_C3HHeJ_T0053101.1 MGP_C3HHeJ_G0025231.1 mouse_genomes_project 2 24634094 24638327 - Surf6 protein_coding processed_transcript MGP_C3HHeJ_T0053102.1 MGP_C3HHeJ_G0025231.1 mouse_genomes_project 2 24634391 24637889 - Surf6 protein_coding processed_transcript MGP_C3HHeJ_T0053103.1 MGP_C3HHeJ_G0025231.1 mouse_genomes_project 2 24634455 24645343 - Surf6 protein_coding processed_transcript MGP_C3HHeJ_T0053104.1 MGP_C3HHeJ_G0025231.1 mouse_genomes_project 2 24636150 24648797 - MGP_C3HHeJ_P0053104 Surf6 protein_coding protein_coding MGP_C3HHeJ_T0053105.1 MGP_C3HHeJ_G0025231.1 mouse_genomes_project 2 24636487 24648768 - MGP_C3HHeJ_P0053105 Surf6 protein_coding protein_coding MGP_C3HHeJ_T0053106.1 MGP_C3HHeJ_G0025231.1 mouse_genomes_project 2 24638390 24648708 - Surf6 protein_coding processed_transcript MGP_C3HHeJ_T0053107.1 MGP_C3HHeJ_G0025231.1 mouse_genomes_project 2 24645011 24645686 - Surf6 protein_coding processed_transcript MGP_C3HHeJ_T0099176.1 MGP_C3HHeJ_G0037370.1 mouse_genomes_project 2 15615248 15615353 + Gm25147 snRNA snRNA MGP_C3HHeJ_T0007343.1 MGP_C3HHeJ_G0006017.1 mouse_genomes_project 2 176174575 176183180 - Gm14641 lincRNA lincRNA MGP_C3HHeJ_T0053675.1 MGP_C3HHeJ_G0025323.1 mouse_genomes_project 2 29695633 29708236 + MGP_C3HHeJ_P0053675 Exosc2 protein_coding protein_coding MGP_C3HHeJ_T0053676.1 MGP_C3HHeJ_G0025323.1 mouse_genomes_project 2 29695637 29707309 + Exosc2 protein_coding retained_intron MGP_C3HHeJ_T0053677.1 MGP_C3HHeJ_G0025323.1 mouse_genomes_project 2 29695652 29706848 + MGP_C3HHeJ_P0053677 Exosc2 protein_coding protein_coding MGP_C3HHeJ_T0053678.1 MGP_C3HHeJ_G0025323.1 mouse_genomes_project 2 29695661 29704803 + MGP_C3HHeJ_P0053678 Exosc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053679.1 MGP_C3HHeJ_G0025323.1 mouse_genomes_project 2 29699557 29704876 + Exosc2 protein_coding processed_transcript MGP_C3HHeJ_T0053680.1 MGP_C3HHeJ_G0025323.1 mouse_genomes_project 2 29704626 29706841 + Exosc2 protein_coding retained_intron MGP_C3HHeJ_T0058825.1 MGP_C3HHeJ_G0026582.1 mouse_genomes_project 2 168401603 168402927 + MGP_C3HHeJ_P0058825 Wfdc10 protein_coding protein_coding MGP_C3HHeJ_T0000993.1 MGP_C3HHeJ_G0000930.1 mouse_genomes_project 2 8237455 8237566 - TEC TEC MGP_C3HHeJ_T0058972.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169598617 169678935 - MGP_C3HHeJ_P0058972 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058973.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169598617 169706812 - MGP_C3HHeJ_P0058973 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058974.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169598620 169704305 - MGP_C3HHeJ_P0058974 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058975.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169598620 169704305 - MGP_C3HHeJ_P0058975 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058976.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169599828 169706833 - MGP_C3HHeJ_P0058976 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058977.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169599855 169706709 - Zmynd8 protein_coding processed_transcript MGP_C3HHeJ_T0058978.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169599855 169699816 - MGP_C3HHeJ_P0058978 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058979.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169600065 169706935 - MGP_C3HHeJ_P0058979 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058980.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169643580 169697164 - MGP_C3HHeJ_P0058980 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058981.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169643637 169719530 - MGP_C3HHeJ_P0058981 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058982.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169650819 169678935 - Zmynd8 protein_coding processed_transcript MGP_C3HHeJ_T0058983.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169659747 169721679 - MGP_C3HHeJ_P0058983 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058984.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169662490 169682760 - Zmynd8 protein_coding processed_transcript MGP_C3HHeJ_T0058985.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169665452 169672916 - Zmynd8 protein_coding processed_transcript MGP_C3HHeJ_T0058986.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169672826 169697987 - Zmynd8 protein_coding processed_transcript MGP_C3HHeJ_T0058987.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169672826 169697795 - MGP_C3HHeJ_P0058987 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058988.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169672827 169701938 - Zmynd8 protein_coding processed_transcript MGP_C3HHeJ_T0058989.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169694394 169706270 - Zmynd8 protein_coding processed_transcript MGP_C3HHeJ_T0058990.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169696257 169706299 - Zmynd8 protein_coding retained_intron MGP_C3HHeJ_T0058991.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169696535 169697577 - Zmynd8 protein_coding retained_intron MGP_C3HHeJ_T0058992.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169696643 169706812 - Zmynd8 protein_coding retained_intron MGP_C3HHeJ_T0013318.1 MGP_C3HHeJ_G0011422.1 mouse_genomes_project 2 20738277 20739918 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053625.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29025413 29147775 - MGP_C3HHeJ_P0053625 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053626.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29025414 29147981 - MGP_C3HHeJ_P0053626 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053627.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29025414 29098594 - MGP_C3HHeJ_P0053627 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053628.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29025415 29147969 - MGP_C3HHeJ_P0053628 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053629.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29026002 29147930 - MGP_C3HHeJ_P0053629 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053630.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29027402 29098594 - Fnbp1 protein_coding processed_transcript MGP_C3HHeJ_T0053631.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29031915 29107896 - MGP_C3HHeJ_P0053631 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053632.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29032220 29147775 - MGP_C3HHeJ_P0053632 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053633.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29032231 29147775 - MGP_C3HHeJ_P0053633 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053634.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29032231 29147775 - MGP_C3HHeJ_P0053634 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053635.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29032231 29147775 - MGP_C3HHeJ_P0053635 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053636.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29032312 29054636 - MGP_C3HHeJ_P0053636 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053637.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29052495 29147912 - MGP_C3HHeJ_P0053637 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053638.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29054758 29147928 - MGP_C3HHeJ_P0053638 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053639.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29058135 29118826 - MGP_C3HHeJ_P0053639 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053640.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29098184 29107994 - Fnbp1 protein_coding processed_transcript MGP_C3HHeJ_T0013476.1 MGP_C3HHeJ_G0011580.1 mouse_genomes_project 2 79854730 79855553 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059470.1 MGP_C3HHeJ_G0026730.1 mouse_genomes_project 2 185805960 185813618 - MGP_C3HHeJ_P0059470 Srms protein_coding protein_coding MGP_C3HHeJ_T0056560.1 MGP_C3HHeJ_G0026058.1 mouse_genomes_project 2 120758162 120770441 + MGP_C3HHeJ_P0056560 Spint1 protein_coding protein_coding MGP_C3HHeJ_T0056561.1 MGP_C3HHeJ_G0026058.1 mouse_genomes_project 2 120758277 120770122 + MGP_C3HHeJ_P0056561 Spint1 protein_coding protein_coding MGP_C3HHeJ_T0056562.1 MGP_C3HHeJ_G0026058.1 mouse_genomes_project 2 120758353 120770454 + MGP_C3HHeJ_P0056562 Spint1 protein_coding protein_coding MGP_C3HHeJ_T0056563.1 MGP_C3HHeJ_G0026058.1 mouse_genomes_project 2 120767294 120769829 + Spint1 protein_coding retained_intron MGP_C3HHeJ_T0056564.1 MGP_C3HHeJ_G0026058.1 mouse_genomes_project 2 120769131 120769976 + Spint1 protein_coding retained_intron MGP_C3HHeJ_T0057347.1 MGP_C3HHeJ_G0026229.1 mouse_genomes_project 2 132770298 132814205 - MGP_C3HHeJ_P0057347 Ubox5 protein_coding protein_coding MGP_C3HHeJ_T0057348.1 MGP_C3HHeJ_G0026229.1 mouse_genomes_project 2 132780598 132814194 - MGP_C3HHeJ_P0057348 Ubox5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0017623.1 MGP_C3HHeJ_G0015222.1 mouse_genomes_project 2 120844624 120849597 - Gm14207 processed_transcript processed_transcript MGP_C3HHeJ_T0017624.1 MGP_C3HHeJ_G0015222.1 mouse_genomes_project 2 120844624 120848946 - Gm14207 processed_transcript processed_transcript MGP_C3HHeJ_T0017625.1 MGP_C3HHeJ_G0015222.1 mouse_genomes_project 2 120844779 120848967 - Gm14207 processed_transcript processed_transcript MGP_C3HHeJ_T0013310.1 MGP_C3HHeJ_G0011414.1 mouse_genomes_project 2 17494642 17496073 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007347.1 MGP_C3HHeJ_G0006021.1 mouse_genomes_project 2 179204891 179215124 + Gm14616 lincRNA lincRNA MGP_C3HHeJ_T0054636.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60582453 60656889 + MGP_C3HHeJ_P0054636 Tank protein_coding protein_coding MGP_C3HHeJ_T0054637.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60582454 60656889 + MGP_C3HHeJ_P0054637 Tank protein_coding protein_coding MGP_C3HHeJ_T0054638.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60582479 60656808 + Tank protein_coding processed_transcript MGP_C3HHeJ_T0054639.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60582479 60646625 + Tank protein_coding processed_transcript MGP_C3HHeJ_T0054640.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60597513 60656889 + MGP_C3HHeJ_P0054640 Tank protein_coding protein_coding MGP_C3HHeJ_T0054641.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60597533 60656889 + MGP_C3HHeJ_P0054641 Tank protein_coding protein_coding MGP_C3HHeJ_T0054642.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60597572 60654517 + MGP_C3HHeJ_P0054642 Tank protein_coding protein_coding MGP_C3HHeJ_T0054643.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60597600 60619587 + Tank protein_coding processed_transcript MGP_C3HHeJ_T0054644.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60597601 60656808 + Tank protein_coding processed_transcript MGP_C3HHeJ_T0054645.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60630462 60648908 + Tank protein_coding processed_transcript MGP_C3HHeJ_T0054646.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60646548 60652695 + Tank protein_coding processed_transcript MGP_C3HHeJ_T0053259.1 MGP_C3HHeJ_G0025262.1 mouse_genomes_project 2 26436290 26448814 - MGP_C3HHeJ_P0053259 Gfi1b protein_coding protein_coding MGP_C3HHeJ_T0053260.1 MGP_C3HHeJ_G0025262.1 mouse_genomes_project 2 26436295 26448777 - MGP_C3HHeJ_P0053260 Gfi1b protein_coding protein_coding MGP_C3HHeJ_T0053261.1 MGP_C3HHeJ_G0025262.1 mouse_genomes_project 2 26441615 26442237 - Gfi1b protein_coding processed_transcript MGP_C3HHeJ_T0053262.1 MGP_C3HHeJ_G0025262.1 mouse_genomes_project 2 26441622 26448814 - Gfi1b protein_coding processed_transcript MGP_C3HHeJ_T0001029.1 MGP_C3HHeJ_G0000966.1 mouse_genomes_project 2 30587579 30591734 + TEC TEC MGP_C3HHeJ_T0013645.1 MGP_C3HHeJ_G0011749.1 mouse_genomes_project 2 147068221 147068624 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056198.1 MGP_C3HHeJ_G0025946.1 mouse_genomes_project 2 105791447 105799151 - Eif3m protein_coding retained_intron MGP_C3HHeJ_T0056199.1 MGP_C3HHeJ_G0025946.1 mouse_genomes_project 2 105791447 105808958 - MGP_C3HHeJ_P0056199 Eif3m protein_coding protein_coding MGP_C3HHeJ_T0056200.1 MGP_C3HHeJ_G0025946.1 mouse_genomes_project 2 105791450 105798704 - MGP_C3HHeJ_P0056200 Eif3m protein_coding protein_coding MGP_C3HHeJ_T0056201.1 MGP_C3HHeJ_G0025946.1 mouse_genomes_project 2 105791480 105808921 - MGP_C3HHeJ_P0056201 Eif3m protein_coding protein_coding MGP_C3HHeJ_T0055624.1 MGP_C3HHeJ_G0025841.1 mouse_genomes_project 2 90232707 90236485 + MGP_C3HHeJ_P0055624 protein_coding protein_coding MGP_C3HHeJ_T0003995.1 MGP_C3HHeJ_G0003540.1 mouse_genomes_project 2 120336671 120340839 - Gm14091 antisense antisense MGP_C3HHeJ_T0007137.1 MGP_C3HHeJ_G0005849.1 mouse_genomes_project 2 71185907 71193490 + Gm13647 lincRNA lincRNA MGP_C3HHeJ_T0056364.1 MGP_C3HHeJ_G0026012.1 mouse_genomes_project 2 113720562 113891954 + MGP_C3HHeJ_P0056364 Aven protein_coding protein_coding MGP_C3HHeJ_T0056365.1 MGP_C3HHeJ_G0026012.1 mouse_genomes_project 2 113816620 113887343 + Aven protein_coding processed_transcript MGP_C3HHeJ_T0056366.1 MGP_C3HHeJ_G0026012.1 mouse_genomes_project 2 113816972 113888185 + MGP_C3HHeJ_P0056366 Aven protein_coding protein_coding MGP_C3HHeJ_T0100449.1 MGP_C3HHeJ_G0038643.1 mouse_genomes_project 2 41266231 41266363 + Gm24350 snoRNA snoRNA MGP_C3HHeJ_T0011417.1 MGP_C3HHeJ_G0009550.1 mouse_genomes_project 2 129558886 129559178 - Gm22613 misc_RNA misc_RNA MGP_C3HHeJ_T0000989.1 MGP_C3HHeJ_G0000926.1 mouse_genomes_project 2 3523757 3527189 + TEC TEC MGP_C3HHeJ_T0052111.1 MGP_C3HHeJ_G0025057.1 mouse_genomes_project 2 2880960 2907658 + MGP_C3HHeJ_P0052111 Nudt5 protein_coding protein_coding MGP_C3HHeJ_T0052112.1 MGP_C3HHeJ_G0025057.1 mouse_genomes_project 2 2880975 2904521 + MGP_C3HHeJ_P0052112 Nudt5 protein_coding protein_coding MGP_C3HHeJ_T0052113.1 MGP_C3HHeJ_G0025057.1 mouse_genomes_project 2 2881194 2893238 + Nudt5 protein_coding retained_intron MGP_C3HHeJ_T0052114.1 MGP_C3HHeJ_G0025057.1 mouse_genomes_project 2 2881194 2900266 + MGP_C3HHeJ_P0052114 Nudt5 protein_coding protein_coding MGP_C3HHeJ_T0052115.1 MGP_C3HHeJ_G0025057.1 mouse_genomes_project 2 2881231 2898206 + MGP_C3HHeJ_P0052115 Nudt5 protein_coding protein_coding MGP_C3HHeJ_T0052116.1 MGP_C3HHeJ_G0025057.1 mouse_genomes_project 2 2884070 2897053 + Nudt5 protein_coding processed_transcript MGP_C3HHeJ_T0056339.1 MGP_C3HHeJ_G0025999.1 mouse_genomes_project 2 113273694 113274630 - MGP_C3HHeJ_P0056339 Olfr1313 protein_coding protein_coding MGP_C3HHeJ_T0057019.1 MGP_C3HHeJ_G0026145.1 mouse_genomes_project 2 127110894 127188571 + MGP_C3HHeJ_P0057019 Slc12a1 protein_coding protein_coding MGP_C3HHeJ_T0057020.1 MGP_C3HHeJ_G0026145.1 mouse_genomes_project 2 127110969 127125393 + Slc12a1 protein_coding retained_intron MGP_C3HHeJ_T0057021.1 MGP_C3HHeJ_G0026145.1 mouse_genomes_project 2 127110989 127188568 + MGP_C3HHeJ_P0057021 Slc12a1 protein_coding protein_coding MGP_C3HHeJ_T0057022.1 MGP_C3HHeJ_G0026145.1 mouse_genomes_project 2 127110989 127188571 + MGP_C3HHeJ_P0057022 Slc12a1 protein_coding protein_coding MGP_C3HHeJ_T0057023.1 MGP_C3HHeJ_G0026145.1 mouse_genomes_project 2 127112318 127187431 + MGP_C3HHeJ_P0057023 Slc12a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0010362.1 MGP_C3HHeJ_G0008495.1 mouse_genomes_project 2 118591882 118591982 + Mir674 miRNA miRNA MGP_C3HHeJ_T0007071.1 MGP_C3HHeJ_G0005796.1 mouse_genomes_project 2 22163159 22187888 - Gm13417 lincRNA lincRNA MGP_C3HHeJ_T0059581.1 MGP_C3HHeJ_G0026746.1 mouse_genomes_project 2 186206172 186232261 + MGP_C3HHeJ_P0059581 Prpf6 protein_coding protein_coding MGP_C3HHeJ_T0059585.1 MGP_C3HHeJ_G0026746.1 mouse_genomes_project 2 186216699 186271226 + MGP_C3HHeJ_P0059585 Prpf6 protein_coding protein_coding MGP_C3HHeJ_T0059586.1 MGP_C3HHeJ_G0026746.1 mouse_genomes_project 2 186216702 186271235 + MGP_C3HHeJ_P0059586 Prpf6 protein_coding protein_coding MGP_C3HHeJ_T0059587.1 MGP_C3HHeJ_G0026746.1 mouse_genomes_project 2 186216756 186257024 + Prpf6 protein_coding retained_intron MGP_C3HHeJ_T0010311.1 MGP_C3HHeJ_G0008444.1 mouse_genomes_project 2 29635401 29635465 + Mir6998 miRNA miRNA MGP_C3HHeJ_T0058464.1 MGP_C3HHeJ_G0026487.1 mouse_genomes_project 2 160212258 160222690 + MGP_C3HHeJ_P0058464 1110008F13Rik protein_coding protein_coding MGP_C3HHeJ_T0058465.1 MGP_C3HHeJ_G0026487.1 mouse_genomes_project 2 160212269 160222525 + 1110008F13Rik protein_coding processed_transcript MGP_C3HHeJ_T0058466.1 MGP_C3HHeJ_G0026487.1 mouse_genomes_project 2 160212275 160216118 + 1110008F13Rik protein_coding retained_intron MGP_C3HHeJ_T0058468.1 MGP_C3HHeJ_G0026487.1 mouse_genomes_project 2 160221668 160222523 + 1110008F13Rik protein_coding processed_transcript MGP_C3HHeJ_T0052074.1 MGP_C3HHeJ_G0025050.1 mouse_genomes_project 2 1928712 1948472 + MGP_C3HHeJ_P0052074 Phyh protein_coding protein_coding MGP_C3HHeJ_T0052075.1 MGP_C3HHeJ_G0025050.1 mouse_genomes_project 2 1928773 1938597 + Phyh protein_coding processed_transcript MGP_C3HHeJ_T0052076.1 MGP_C3HHeJ_G0025050.1 mouse_genomes_project 2 1947224 1948085 + Phyh protein_coding processed_transcript MGP_C3HHeJ_T0101176.1 MGP_C3HHeJ_G0039325.1 mouse_genomes_project 2 113211377 113212502 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0013629.1 MGP_C3HHeJ_G0011733.1 mouse_genomes_project 2 141399860 141400174 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055580.1 MGP_C3HHeJ_G0025813.1 mouse_genomes_project 2 89369767 89370700 - MGP_C3HHeJ_P0055580 Olfr1226 protein_coding protein_coding MGP_C3HHeJ_T0010281.1 MGP_C3HHeJ_G0008414.1 mouse_genomes_project 2 7717800 7717881 + Mir466h miRNA miRNA MGP_C3HHeJ_T0059372.1 MGP_C3HHeJ_G0026712.1 mouse_genomes_project 2 185153487 185157819 + MGP_C3HHeJ_P0059372 Mrgbp protein_coding protein_coding MGP_C3HHeJ_T0059373.1 MGP_C3HHeJ_G0026712.1 mouse_genomes_project 2 185154896 185158472 + MGP_C3HHeJ_P0059373 Mrgbp protein_coding protein_coding MGP_C3HHeJ_T0059374.1 MGP_C3HHeJ_G0026712.1 mouse_genomes_project 2 185154907 185158489 + Mrgbp protein_coding retained_intron MGP_C3HHeJ_T0059375.1 MGP_C3HHeJ_G0026712.1 mouse_genomes_project 2 185154910 185158489 + Mrgbp protein_coding retained_intron MGP_C3HHeJ_T0059376.1 MGP_C3HHeJ_G0026712.1 mouse_genomes_project 2 185154916 185158489 + Mrgbp protein_coding retained_intron MGP_C3HHeJ_T0059377.1 MGP_C3HHeJ_G0026712.1 mouse_genomes_project 2 185154942 185158489 + Mrgbp protein_coding retained_intron MGP_C3HHeJ_T0099171.1 MGP_C3HHeJ_G0037365.1 mouse_genomes_project 2 257194 257335 - Gm22005 snRNA snRNA MGP_C3HHeJ_T0054277.1 MGP_C3HHeJ_G0025440.1 mouse_genomes_project 2 37350774 37359455 + MGP_C3HHeJ_P0054277 Wdr38 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054278.1 MGP_C3HHeJ_G0025440.1 mouse_genomes_project 2 37351617 37354881 + MGP_C3HHeJ_P0054278 Wdr38 protein_coding protein_coding MGP_C3HHeJ_T0054279.1 MGP_C3HHeJ_G0025440.1 mouse_genomes_project 2 37351630 37353573 + Wdr38 protein_coding processed_transcript MGP_C3HHeJ_T0007129.1 MGP_C3HHeJ_G0005841.1 mouse_genomes_project 2 61451755 61456018 - Gm13565 lincRNA lincRNA MGP_C3HHeJ_T0057008.1 MGP_C3HHeJ_G0026142.1 mouse_genomes_project 2 127033874 127038164 - Myef2 protein_coding processed_transcript MGP_C3HHeJ_T0057009.1 MGP_C3HHeJ_G0026142.1 mouse_genomes_project 2 127035432 127073271 - MGP_C3HHeJ_P0057009 Myef2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057010.1 MGP_C3HHeJ_G0026142.1 mouse_genomes_project 2 127035729 127073302 - MGP_C3HHeJ_P0057010 Myef2 protein_coding protein_coding MGP_C3HHeJ_T0057011.1 MGP_C3HHeJ_G0026142.1 mouse_genomes_project 2 127036902 127073299 - MGP_C3HHeJ_P0057011 Myef2 protein_coding protein_coding MGP_C3HHeJ_T0057012.1 MGP_C3HHeJ_G0026142.1 mouse_genomes_project 2 127036903 127073337 - MGP_C3HHeJ_P0057012 Myef2 protein_coding protein_coding MGP_C3HHeJ_T0057013.1 MGP_C3HHeJ_G0026142.1 mouse_genomes_project 2 127036903 127073336 - MGP_C3HHeJ_P0057013 Myef2 protein_coding protein_coding MGP_C3HHeJ_T0057014.1 MGP_C3HHeJ_G0026142.1 mouse_genomes_project 2 127037986 127066539 - MGP_C3HHeJ_P0057014 Myef2 protein_coding protein_coding MGP_C3HHeJ_T0057015.1 MGP_C3HHeJ_G0026142.1 mouse_genomes_project 2 127044617 127073090 - MGP_C3HHeJ_P0057015 Myef2 protein_coding protein_coding MGP_C3HHeJ_T0057016.1 MGP_C3HHeJ_G0026142.1 mouse_genomes_project 2 127048471 127073251 - Myef2 protein_coding retained_intron MGP_C3HHeJ_T0057417.1 MGP_C3HHeJ_G0026242.1 mouse_genomes_project 2 133359836 133374094 - MGP_C3HHeJ_P0057417 1700037H04Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057418.1 MGP_C3HHeJ_G0026242.1 mouse_genomes_project 2 133359837 133362541 - 1700037H04Rik protein_coding retained_intron MGP_C3HHeJ_T0057419.1 MGP_C3HHeJ_G0026242.1 mouse_genomes_project 2 133359837 133374080 - MGP_C3HHeJ_P0057419 1700037H04Rik protein_coding protein_coding MGP_C3HHeJ_T0057420.1 MGP_C3HHeJ_G0026242.1 mouse_genomes_project 2 133360306 133374084 - MGP_C3HHeJ_P0057420 1700037H04Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057421.1 MGP_C3HHeJ_G0026242.1 mouse_genomes_project 2 133360316 133374141 - MGP_C3HHeJ_P0057421 1700037H04Rik protein_coding protein_coding MGP_C3HHeJ_T0057422.1 MGP_C3HHeJ_G0026242.1 mouse_genomes_project 2 133360673 133374102 - MGP_C3HHeJ_P0057422 1700037H04Rik protein_coding protein_coding MGP_C3HHeJ_T0057423.1 MGP_C3HHeJ_G0026242.1 mouse_genomes_project 2 133361793 133374102 - 1700037H04Rik protein_coding processed_transcript MGP_C3HHeJ_T0054561.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58541964 58784285 + MGP_C3HHeJ_P0054561 Tanc1 protein_coding protein_coding MGP_C3HHeJ_T0054562.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58541995 58579327 + Tanc1 protein_coding retained_intron MGP_C3HHeJ_T0054563.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58559970 58576875 + Tanc1 protein_coding retained_intron MGP_C3HHeJ_T0054564.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58576680 58783853 + MGP_C3HHeJ_P0054564 Tanc1 protein_coding protein_coding MGP_C3HHeJ_T0054565.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58626866 58783861 + MGP_C3HHeJ_P0054565 Tanc1 protein_coding protein_coding MGP_C3HHeJ_T0054566.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58638359 58656349 + Tanc1 protein_coding processed_transcript MGP_C3HHeJ_T0054567.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58675718 58757973 + Tanc1 protein_coding retained_intron MGP_C3HHeJ_T0054568.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58702359 58705448 + Tanc1 protein_coding processed_transcript MGP_C3HHeJ_T0054569.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58715531 58721320 + Tanc1 protein_coding processed_transcript MGP_C3HHeJ_T0054570.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58742355 58745792 + Tanc1 protein_coding retained_intron MGP_C3HHeJ_T0054571.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58779875 58783851 + Tanc1 protein_coding retained_intron MGP_C3HHeJ_T0055499.1 MGP_C3HHeJ_G0025739.1 mouse_genomes_project 2 87618496 87619535 - MGP_C3HHeJ_P0055499 Olfr1128 protein_coding protein_coding MGP_C3HHeJ_T0017587.1 MGP_C3HHeJ_G0015205.1 mouse_genomes_project 2 91537830 91545802 - Gm13783 processed_transcript processed_transcript MGP_C3HHeJ_T0001064.1 MGP_C3HHeJ_G0001000.1 mouse_genomes_project 2 131330791 131331832 - TEC TEC MGP_C3HHeJ_T0053605.1 MGP_C3HHeJ_G0025313.1 mouse_genomes_project 2 28954464 28961771 - MGP_C3HHeJ_P0053605 Tor1a protein_coding protein_coding MGP_C3HHeJ_T0053606.1 MGP_C3HHeJ_G0025313.1 mouse_genomes_project 2 28954517 28961710 - Tor1a protein_coding retained_intron MGP_C3HHeJ_T0053607.1 MGP_C3HHeJ_G0025313.1 mouse_genomes_project 2 28954849 28957686 - Tor1a protein_coding retained_intron MGP_C3HHeJ_T0053608.1 MGP_C3HHeJ_G0025313.1 mouse_genomes_project 2 28954890 28957713 - Tor1a protein_coding retained_intron MGP_C3HHeJ_T0053609.1 MGP_C3HHeJ_G0025313.1 mouse_genomes_project 2 28960748 28961726 - Tor1a protein_coding retained_intron MGP_C3HHeJ_T0056803.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122803512 122817177 + Tubgcp4 protein_coding processed_transcript MGP_C3HHeJ_T0056804.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122804026 122832256 + MGP_C3HHeJ_P0056804 Tubgcp4 protein_coding protein_coding MGP_C3HHeJ_T0056805.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122804067 122832255 + MGP_C3HHeJ_P0056805 Tubgcp4 protein_coding protein_coding MGP_C3HHeJ_T0056806.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122804073 122832256 + MGP_C3HHeJ_P0056806 Tubgcp4 protein_coding protein_coding MGP_C3HHeJ_T0056807.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122804098 122832255 + Tubgcp4 protein_coding retained_intron MGP_C3HHeJ_T0056808.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122804104 122808675 + Tubgcp4 protein_coding processed_transcript MGP_C3HHeJ_T0056809.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122804126 122827702 + MGP_C3HHeJ_P0056809 Tubgcp4 protein_coding protein_coding MGP_C3HHeJ_T0056810.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122804151 122817220 + Tubgcp4 protein_coding processed_transcript MGP_C3HHeJ_T0056811.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122804440 122819461 + Tubgcp4 protein_coding retained_intron MGP_C3HHeJ_T0056812.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122806425 122817223 + Tubgcp4 protein_coding processed_transcript MGP_C3HHeJ_T0056813.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122816359 122817550 + Tubgcp4 protein_coding retained_intron MGP_C3HHeJ_T0056814.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122820095 122830535 + Tubgcp4 protein_coding retained_intron MGP_C3HHeJ_T0056815.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122820841 122825151 + Tubgcp4 protein_coding retained_intron MGP_C3HHeJ_T0056816.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122824684 122829717 + Tubgcp4 protein_coding retained_intron MGP_C3HHeJ_T0003904.1 MGP_C3HHeJ_G0003481.1 mouse_genomes_project 2 57207879 57219229 + Gm13544 antisense antisense MGP_C3HHeJ_T0057072.1 MGP_C3HHeJ_G0026160.1 mouse_genomes_project 2 128609029 128642498 - MGP_C3HHeJ_P0057072 Hdc protein_coding protein_coding MGP_C3HHeJ_T0057073.1 MGP_C3HHeJ_G0026160.1 mouse_genomes_project 2 128609946 128615356 - Hdc protein_coding processed_transcript MGP_C3HHeJ_T0057074.1 MGP_C3HHeJ_G0026160.1 mouse_genomes_project 2 128617337 128642481 - Hdc protein_coding retained_intron MGP_C3HHeJ_T0057075.1 MGP_C3HHeJ_G0026160.1 mouse_genomes_project 2 128622816 128626146 - Hdc protein_coding processed_transcript MGP_C3HHeJ_T0057076.1 MGP_C3HHeJ_G0026160.1 mouse_genomes_project 2 128640108 128643119 - Hdc protein_coding processed_transcript MGP_C3HHeJ_T0054024.1 MGP_C3HHeJ_G0025374.1 mouse_genomes_project 2 32979211 32984789 + MGP_C3HHeJ_P0054024 Hspa5 protein_coding protein_coding MGP_C3HHeJ_T0054025.1 MGP_C3HHeJ_G0025374.1 mouse_genomes_project 2 32979336 32983773 + MGP_C3HHeJ_P0054025 Hspa5 protein_coding protein_coding MGP_C3HHeJ_T0054026.1 MGP_C3HHeJ_G0025374.1 mouse_genomes_project 2 32979340 32980549 + MGP_C3HHeJ_P0054026 Hspa5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054027.1 MGP_C3HHeJ_G0025374.1 mouse_genomes_project 2 32979822 32981434 + Hspa5 protein_coding retained_intron MGP_C3HHeJ_T0054028.1 MGP_C3HHeJ_G0025374.1 mouse_genomes_project 2 32980907 32981575 + Hspa5 protein_coding retained_intron MGP_C3HHeJ_T0054029.1 MGP_C3HHeJ_G0025374.1 mouse_genomes_project 2 32982088 32982857 + Hspa5 protein_coding retained_intron MGP_C3HHeJ_T0056313.1 MGP_C3HHeJ_G0025973.1 mouse_genomes_project 2 112237654 112238593 + MGP_C3HHeJ_P0056313 Olfr1276 protein_coding protein_coding MGP_C3HHeJ_T0055077.1 MGP_C3HHeJ_G0025577.1 mouse_genomes_project 2 74190669 74193959 + MGP_C3HHeJ_P0055077 Hoxd13 protein_coding protein_coding MGP_C3HHeJ_T0056391.1 MGP_C3HHeJ_G0026019.1 mouse_genomes_project 2 115279969 115283988 - MGP_C3HHeJ_P0056391 Gjd2 protein_coding protein_coding MGP_C3HHeJ_T0101934.1 MGP_C3HHeJ_G0039899.1 mouse_genomes_project 2 178103833 178163180 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0058437.1 MGP_C3HHeJ_G0026483.1 mouse_genomes_project 2 159872825 159893287 + MGP_C3HHeJ_P0058437 Aar2 protein_coding protein_coding MGP_C3HHeJ_T0058438.1 MGP_C3HHeJ_G0026483.1 mouse_genomes_project 2 159872837 159894104 + MGP_C3HHeJ_P0058438 Aar2 protein_coding protein_coding MGP_C3HHeJ_T0058439.1 MGP_C3HHeJ_G0026483.1 mouse_genomes_project 2 159872849 159875942 + Aar2 protein_coding processed_transcript MGP_C3HHeJ_T0058440.1 MGP_C3HHeJ_G0026483.1 mouse_genomes_project 2 159872851 159876323 + MGP_C3HHeJ_P0058440 Aar2 protein_coding protein_coding MGP_C3HHeJ_T0058441.1 MGP_C3HHeJ_G0026483.1 mouse_genomes_project 2 159872865 159876076 + MGP_C3HHeJ_P0058441 Aar2 protein_coding protein_coding MGP_C3HHeJ_T0052846.1 MGP_C3HHeJ_G0025182.1 mouse_genomes_project 2 23137906 23139745 + Clic3 protein_coding processed_transcript MGP_C3HHeJ_T0052847.1 MGP_C3HHeJ_G0025182.1 mouse_genomes_project 2 23137906 23139845 + MGP_C3HHeJ_P0052847 Clic3 protein_coding protein_coding MGP_C3HHeJ_T0052848.1 MGP_C3HHeJ_G0025182.1 mouse_genomes_project 2 23137917 23139845 + MGP_C3HHeJ_P0052848 Clic3 protein_coding protein_coding MGP_C3HHeJ_T0052849.1 MGP_C3HHeJ_G0025182.1 mouse_genomes_project 2 23137959 23139845 + Clic3 protein_coding processed_transcript MGP_C3HHeJ_T0052850.1 MGP_C3HHeJ_G0025182.1 mouse_genomes_project 2 23137965 23139752 + Clic3 protein_coding processed_transcript MGP_C3HHeJ_T0052851.1 MGP_C3HHeJ_G0025182.1 mouse_genomes_project 2 23138704 23139284 + Clic3 protein_coding processed_transcript MGP_C3HHeJ_T0101915.1 MGP_C3HHeJ_G0039880.1 mouse_genomes_project 2 88746944 88748584 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0052756.1 MGP_C3HHeJ_G0025166.1 mouse_genomes_project 2 22904946 22905800 + MGP_C3HHeJ_P0052756 Tmem203 protein_coding protein_coding MGP_C3HHeJ_T0056334.1 MGP_C3HHeJ_G0025994.1 mouse_genomes_project 2 113168749 113169712 - MGP_C3HHeJ_P0056334 Olfr1308 protein_coding protein_coding MGP_C3HHeJ_T0052870.1 MGP_C3HHeJ_G0025185.1 mouse_genomes_project 2 23181135 23185091 - MGP_C3HHeJ_P0052870 C8g protein_coding protein_coding MGP_C3HHeJ_T0052871.1 MGP_C3HHeJ_G0025185.1 mouse_genomes_project 2 23181135 23183488 - MGP_C3HHeJ_P0052871 C8g protein_coding protein_coding MGP_C3HHeJ_T0052872.1 MGP_C3HHeJ_G0025185.1 mouse_genomes_project 2 23181140 23182740 - C8g protein_coding processed_transcript MGP_C3HHeJ_T0052873.1 MGP_C3HHeJ_G0025185.1 mouse_genomes_project 2 23181140 23181987 - C8g protein_coding processed_transcript MGP_C3HHeJ_T0052874.1 MGP_C3HHeJ_G0025185.1 mouse_genomes_project 2 23181140 23182720 - C8g protein_coding processed_transcript MGP_C3HHeJ_T0052875.1 MGP_C3HHeJ_G0025185.1 mouse_genomes_project 2 23181142 23182728 - C8g protein_coding processed_transcript MGP_C3HHeJ_T0052876.1 MGP_C3HHeJ_G0025185.1 mouse_genomes_project 2 23181381 23182599 - C8g protein_coding processed_transcript MGP_C3HHeJ_T0058826.1 MGP_C3HHeJ_G0026583.1 mouse_genomes_project 2 168408803 168420750 - MGP_C3HHeJ_P0058826 Wfdc11 protein_coding protein_coding MGP_C3HHeJ_T0058827.1 MGP_C3HHeJ_G0026583.1 mouse_genomes_project 2 168408946 168411369 - MGP_C3HHeJ_P0058827 Wfdc11 protein_coding protein_coding MGP_C3HHeJ_T0055473.1 MGP_C3HHeJ_G0025721.1 mouse_genomes_project 2 87036335 87037274 - MGP_C3HHeJ_P0055473 Olfr1106 protein_coding protein_coding MGP_C3HHeJ_T0007166.1 MGP_C3HHeJ_G0005872.1 mouse_genomes_project 2 77890074 77954214 + Gm14461 lincRNA lincRNA MGP_C3HHeJ_T0007167.1 MGP_C3HHeJ_G0005872.1 mouse_genomes_project 2 77953675 77953984 + Gm14461 lincRNA lincRNA MGP_C3HHeJ_T0013300.1 MGP_C3HHeJ_G0011404.1 mouse_genomes_project 2 15711877 15712356 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013265.1 MGP_C3HHeJ_G0011369.1 mouse_genomes_project 2 667072 668141 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013482.1 MGP_C3HHeJ_G0011586.1 mouse_genomes_project 2 80666299 80666914 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053214.1 MGP_C3HHeJ_G0025251.1 mouse_genomes_project 2 25671114 25827264 + MGP_C3HHeJ_P0053214 Col5a1 protein_coding protein_coding MGP_C3HHeJ_T0053215.1 MGP_C3HHeJ_G0025251.1 mouse_genomes_project 2 25803168 25823823 + MGP_C3HHeJ_P0053215 Col5a1 protein_coding protein_coding MGP_C3HHeJ_T0057991.1 MGP_C3HHeJ_G0026396.1 mouse_genomes_project 2 155867675 155918653 - MGP_C3HHeJ_P0057991 Bcl2l1 protein_coding protein_coding MGP_C3HHeJ_T0057992.1 MGP_C3HHeJ_G0026396.1 mouse_genomes_project 2 155867679 155917591 - MGP_C3HHeJ_P0057992 Bcl2l1 protein_coding protein_coding MGP_C3HHeJ_T0057993.1 MGP_C3HHeJ_G0026396.1 mouse_genomes_project 2 155868418 155915461 - Bcl2l1 protein_coding processed_transcript MGP_C3HHeJ_T0057994.1 MGP_C3HHeJ_G0026396.1 mouse_genomes_project 2 155915052 155917566 - MGP_C3HHeJ_P0057994 Bcl2l1 protein_coding protein_coding MGP_C3HHeJ_T0057995.1 MGP_C3HHeJ_G0026396.1 mouse_genomes_project 2 155915287 155917236 - MGP_C3HHeJ_P0057995 Bcl2l1 protein_coding protein_coding MGP_C3HHeJ_T0057996.1 MGP_C3HHeJ_G0026396.1 mouse_genomes_project 2 155916352 155918037 - MGP_C3HHeJ_P0057996 Bcl2l1 protein_coding protein_coding MGP_C3HHeJ_T0057997.1 MGP_C3HHeJ_G0026396.1 mouse_genomes_project 2 155916454 155917577 - MGP_C3HHeJ_P0057997 Bcl2l1 protein_coding protein_coding MGP_C3HHeJ_T0057998.1 MGP_C3HHeJ_G0026396.1 mouse_genomes_project 2 155916626 155917543 - MGP_C3HHeJ_P0057998 Bcl2l1 protein_coding protein_coding MGP_C3HHeJ_T0057999.1 MGP_C3HHeJ_G0026396.1 mouse_genomes_project 2 155916682 155918635 - MGP_C3HHeJ_P0057999 Bcl2l1 protein_coding protein_coding MGP_C3HHeJ_T0007203.1 MGP_C3HHeJ_G0005901.1 mouse_genomes_project 2 106854960 106856962 - Gm29053 lincRNA lincRNA MGP_C3HHeJ_T0057892.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154580039 154599236 + MGP_C3HHeJ_P0057892 Fkbp1a protein_coding protein_coding MGP_C3HHeJ_T0057893.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154580141 154598372 + Fkbp1a protein_coding processed_transcript MGP_C3HHeJ_T0057894.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154580150 154597164 + Fkbp1a protein_coding processed_transcript MGP_C3HHeJ_T0057895.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154580150 154582234 + Fkbp1a protein_coding retained_intron MGP_C3HHeJ_T0057896.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154580171 154597372 + Fkbp1a protein_coding retained_intron MGP_C3HHeJ_T0057897.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154580177 154598486 + Fkbp1a protein_coding processed_transcript MGP_C3HHeJ_T0057898.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154580252 154595028 + Fkbp1a protein_coding processed_transcript MGP_C3HHeJ_T0057899.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154580293 154598197 + Fkbp1a protein_coding processed_transcript MGP_C3HHeJ_T0057900.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154581455 154599234 + MGP_C3HHeJ_P0057900 Fkbp1a protein_coding protein_coding MGP_C3HHeJ_T0057901.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154582966 154598257 + Fkbp1a protein_coding processed_transcript MGP_C3HHeJ_T0058612.1 MGP_C3HHeJ_G0026517.1 mouse_genomes_project 2 162265045 162283590 + MGP_C3HHeJ_P0058612 Fam83d protein_coding protein_coding MGP_C3HHeJ_T0058613.1 MGP_C3HHeJ_G0026517.1 mouse_genomes_project 2 162278360 162283590 + Fam83d protein_coding retained_intron MGP_C3HHeJ_T0058346.1 MGP_C3HHeJ_G0026474.1 mouse_genomes_project 2 159390672 159434125 - MGP_C3HHeJ_P0058346 Gm28036 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058347.1 MGP_C3HHeJ_G0026474.1 mouse_genomes_project 2 159390672 159417316 - MGP_C3HHeJ_P0058347 Gm28036 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058363.1 MGP_C3HHeJ_G0026474.1 mouse_genomes_project 2 159397761 159443856 - MGP_C3HHeJ_P0058363 Gm28036 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058364.1 MGP_C3HHeJ_G0026474.1 mouse_genomes_project 2 159397761 159443856 - MGP_C3HHeJ_P0058364 Gm28036 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058365.1 MGP_C3HHeJ_G0026474.1 mouse_genomes_project 2 159397761 159443856 - MGP_C3HHeJ_P0058365 Gm28036 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058366.1 MGP_C3HHeJ_G0026474.1 mouse_genomes_project 2 159397923 159434150 - MGP_C3HHeJ_P0058366 Gm28036 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058367.1 MGP_C3HHeJ_G0026474.1 mouse_genomes_project 2 159397929 159416159 - MGP_C3HHeJ_P0058367 Gm28036 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058368.1 MGP_C3HHeJ_G0026474.1 mouse_genomes_project 2 159398256 159434155 - MGP_C3HHeJ_P0058368 Gm28036 protein_coding protein_coding MGP_C3HHeJ_T0013456.1 MGP_C3HHeJ_G0011560.1 mouse_genomes_project 2 72614180 72614671 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011426.1 MGP_C3HHeJ_G0009559.1 mouse_genomes_project 2 168516677 168516993 + Gm22596 misc_RNA misc_RNA MGP_C3HHeJ_T0007080.1 MGP_C3HHeJ_G0005802.1 mouse_genomes_project 2 23918261 23923211 - Gm13553 lincRNA lincRNA MGP_C3HHeJ_T0059364.1 MGP_C3HHeJ_G0026709.1 mouse_genomes_project 2 184877934 184887499 - MGP_C3HHeJ_P0059364 Gata5 protein_coding protein_coding MGP_C3HHeJ_T0013620.1 MGP_C3HHeJ_G0011724.1 mouse_genomes_project 2 134944111 134944716 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052174.1 MGP_C3HHeJ_G0025066.1 mouse_genomes_project 2 7042167 7063823 - MGP_C3HHeJ_P0052174 Gata3 protein_coding protein_coding MGP_C3HHeJ_T0052175.1 MGP_C3HHeJ_G0025066.1 mouse_genomes_project 2 7048240 7058904 - Gata3 protein_coding processed_transcript MGP_C3HHeJ_T0052176.1 MGP_C3HHeJ_G0025066.1 mouse_genomes_project 2 7059718 7060631 - Gata3 protein_coding processed_transcript MGP_C3HHeJ_T0052177.1 MGP_C3HHeJ_G0025066.1 mouse_genomes_project 2 7059933 7075257 - MGP_C3HHeJ_P0052177 Gata3 protein_coding protein_coding MGP_C3HHeJ_T0052178.1 MGP_C3HHeJ_G0025066.1 mouse_genomes_project 2 7063066 7073007 - Gata3 protein_coding processed_transcript MGP_C3HHeJ_T0052179.1 MGP_C3HHeJ_G0025066.1 mouse_genomes_project 2 7063121 7075225 - Gata3 protein_coding processed_transcript MGP_C3HHeJ_T0101932.1 MGP_C3HHeJ_G0039897.1 mouse_genomes_project 2 157224964 157229314 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0052129.1 MGP_C3HHeJ_G0025060.1 mouse_genomes_project 2 2931646 2976950 - MGP_C3HHeJ_P0052129 Dhtkd1 protein_coding protein_coding MGP_C3HHeJ_T0052130.1 MGP_C3HHeJ_G0025060.1 mouse_genomes_project 2 2932716 2976901 - MGP_C3HHeJ_P0052130 Dhtkd1 protein_coding protein_coding MGP_C3HHeJ_T0052131.1 MGP_C3HHeJ_G0025060.1 mouse_genomes_project 2 2939145 2947155 - Dhtkd1 protein_coding processed_transcript MGP_C3HHeJ_T0007140.1 MGP_C3HHeJ_G0005852.1 mouse_genomes_project 2 72178620 72208172 + 8430437L04Rik lincRNA lincRNA MGP_C3HHeJ_T0054940.1 MGP_C3HHeJ_G0025553.1 mouse_genomes_project 2 70661073 70762201 - MGP_C3HHeJ_P0054940 Slc25a12 protein_coding protein_coding MGP_C3HHeJ_T0054941.1 MGP_C3HHeJ_G0025553.1 mouse_genomes_project 2 70664127 70761985 - MGP_C3HHeJ_P0054941 Slc25a12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054942.1 MGP_C3HHeJ_G0025553.1 mouse_genomes_project 2 70664514 70684124 - Slc25a12 protein_coding processed_transcript MGP_C3HHeJ_T0054943.1 MGP_C3HHeJ_G0025553.1 mouse_genomes_project 2 70668993 70672170 - Slc25a12 protein_coding retained_intron MGP_C3HHeJ_T0054944.1 MGP_C3HHeJ_G0025553.1 mouse_genomes_project 2 70703526 70723646 - Slc25a12 protein_coding processed_transcript MGP_C3HHeJ_T0054945.1 MGP_C3HHeJ_G0025553.1 mouse_genomes_project 2 70724542 70738790 - Slc25a12 protein_coding processed_transcript MGP_C3HHeJ_T0054946.1 MGP_C3HHeJ_G0025553.1 mouse_genomes_project 2 70738647 70742591 - Slc25a12 protein_coding processed_transcript MGP_C3HHeJ_T0057226.1 MGP_C3HHeJ_G0026195.1 mouse_genomes_project 2 130934066 130972192 + MGP_C3HHeJ_P0057226 Tmem87b protein_coding protein_coding MGP_C3HHeJ_T0057227.1 MGP_C3HHeJ_G0026195.1 mouse_genomes_project 2 130934287 130972195 + MGP_C3HHeJ_P0057227 Tmem87b protein_coding unknown_likely_coding MGP_C3HHeJ_T0057228.1 MGP_C3HHeJ_G0026195.1 mouse_genomes_project 2 130934332 130969723 + MGP_C3HHeJ_P0057228 Tmem87b protein_coding protein_coding MGP_C3HHeJ_T0057229.1 MGP_C3HHeJ_G0026195.1 mouse_genomes_project 2 130948252 130968247 + Tmem87b protein_coding processed_transcript MGP_C3HHeJ_T0057230.1 MGP_C3HHeJ_G0026195.1 mouse_genomes_project 2 130957790 130967656 + Tmem87b protein_coding retained_intron MGP_C3HHeJ_T0057231.1 MGP_C3HHeJ_G0026195.1 mouse_genomes_project 2 130967890 130969342 + Tmem87b protein_coding processed_transcript MGP_C3HHeJ_T0058133.1 MGP_C3HHeJ_G0026433.1 mouse_genomes_project 2 157642175 157748936 + MGP_C3HHeJ_P0058133 Cbfa2t2 protein_coding protein_coding MGP_C3HHeJ_T0058134.1 MGP_C3HHeJ_G0026433.1 mouse_genomes_project 2 157642178 157736220 + MGP_C3HHeJ_P0058134 Cbfa2t2 protein_coding protein_coding MGP_C3HHeJ_T0058135.1 MGP_C3HHeJ_G0026433.1 mouse_genomes_project 2 157642189 157748936 + MGP_C3HHeJ_P0058135 Cbfa2t2 protein_coding protein_coding MGP_C3HHeJ_T0058136.1 MGP_C3HHeJ_G0026433.1 mouse_genomes_project 2 157642229 157727631 + MGP_C3HHeJ_P0058136 Cbfa2t2 protein_coding protein_coding MGP_C3HHeJ_T0058137.1 MGP_C3HHeJ_G0026433.1 mouse_genomes_project 2 157642536 157713877 + MGP_C3HHeJ_P0058137 Cbfa2t2 protein_coding protein_coding MGP_C3HHeJ_T0058138.1 MGP_C3HHeJ_G0026433.1 mouse_genomes_project 2 157719629 157748936 + MGP_C3HHeJ_P0058138 Cbfa2t2 protein_coding protein_coding MGP_C3HHeJ_T0058139.1 MGP_C3HHeJ_G0026433.1 mouse_genomes_project 2 157725768 157727859 + Cbfa2t2 protein_coding retained_intron MGP_C3HHeJ_T0058140.1 MGP_C3HHeJ_G0026433.1 mouse_genomes_project 2 157733790 157741201 + Cbfa2t2 protein_coding retained_intron MGP_C3HHeJ_T0058141.1 MGP_C3HHeJ_G0026433.1 mouse_genomes_project 2 157740640 157744567 + Cbfa2t2 protein_coding retained_intron MGP_C3HHeJ_T0007349.1 MGP_C3HHeJ_G0006023.1 mouse_genomes_project 2 184923290 184938701 - B230312C02Rik lincRNA lincRNA MGP_C3HHeJ_T0057850.1 MGP_C3HHeJ_G0026350.1 mouse_genomes_project 2 153706159 153729119 + MGP_C3HHeJ_P0057850 Entpd6 protein_coding protein_coding MGP_C3HHeJ_T0057851.1 MGP_C3HHeJ_G0026350.1 mouse_genomes_project 2 153706198 153720806 + Entpd6 protein_coding retained_intron MGP_C3HHeJ_T0057852.1 MGP_C3HHeJ_G0026350.1 mouse_genomes_project 2 153706209 153721256 + Entpd6 protein_coding processed_transcript MGP_C3HHeJ_T0057853.1 MGP_C3HHeJ_G0026350.1 mouse_genomes_project 2 153706288 153710342 + Entpd6 protein_coding processed_transcript MGP_C3HHeJ_T0013634.1 MGP_C3HHeJ_G0011738.1 mouse_genomes_project 2 143552047 143552532 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017608.1 MGP_C3HHeJ_G0015215.1 mouse_genomes_project 2 110873366 110885016 - Platr8 processed_transcript processed_transcript MGP_C3HHeJ_T0055435.1 MGP_C3HHeJ_G0025685.1 mouse_genomes_project 2 86004190 86005135 - MGP_C3HHeJ_P0055435 Olfr1043 protein_coding protein_coding MGP_C3HHeJ_T0052741.1 MGP_C3HHeJ_G0025164.1 mouse_genomes_project 2 22891762 22892905 + MGP_C3HHeJ_P0052741 Rnf208 protein_coding protein_coding MGP_C3HHeJ_T0052742.1 MGP_C3HHeJ_G0025164.1 mouse_genomes_project 2 22892436 22893769 + MGP_C3HHeJ_P0052742 Rnf208 protein_coding protein_coding MGP_C3HHeJ_T0052743.1 MGP_C3HHeJ_G0025164.1 mouse_genomes_project 2 22892445 22893770 + MGP_C3HHeJ_P0052743 Rnf208 protein_coding protein_coding MGP_C3HHeJ_T0055522.1 MGP_C3HHeJ_G0025760.1 mouse_genomes_project 2 87993700 87994657 + MGP_C3HHeJ_P0055522 Olfr1153 protein_coding protein_coding MGP_C3HHeJ_T0100492.1 MGP_C3HHeJ_G0038686.1 mouse_genomes_project 2 151002225 151002538 + Gm24221 snoRNA snoRNA MGP_C3HHeJ_T0101168.1 MGP_C3HHeJ_G0039319.1 mouse_genomes_project 2 22100076 22100662 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0013728.1 MGP_C3HHeJ_G0011832.1 mouse_genomes_project 2 178774503 178774864 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055408.1 MGP_C3HHeJ_G0025659.1 mouse_genomes_project 2 85215648 85216761 - MGP_C3HHeJ_P0055408 Olfr995 protein_coding protein_coding MGP_C3HHeJ_T0057603.1 MGP_C3HHeJ_G0026279.1 mouse_genomes_project 2 139283749 139301992 - MGP_C3HHeJ_P0057603 Mkks protein_coding protein_coding MGP_C3HHeJ_T0057604.1 MGP_C3HHeJ_G0026279.1 mouse_genomes_project 2 139283749 139301999 - MGP_C3HHeJ_P0057604 Mkks protein_coding protein_coding MGP_C3HHeJ_T0057605.1 MGP_C3HHeJ_G0026279.1 mouse_genomes_project 2 139291188 139301764 - MGP_C3HHeJ_P0057605 Mkks protein_coding protein_coding MGP_C3HHeJ_T0010385.1 MGP_C3HHeJ_G0008518.1 mouse_genomes_project 2 158910420 158910499 + Mir499 miRNA miRNA MGP_C3HHeJ_T0058710.1 MGP_C3HHeJ_G0026539.1 mouse_genomes_project 2 167122436 167141972 + MGP_C3HHeJ_P0058710 Gdap1l1 protein_coding protein_coding MGP_C3HHeJ_T0058711.1 MGP_C3HHeJ_G0026539.1 mouse_genomes_project 2 167122438 167141623 + MGP_C3HHeJ_P0058711 Gdap1l1 protein_coding protein_coding MGP_C3HHeJ_T0058712.1 MGP_C3HHeJ_G0026539.1 mouse_genomes_project 2 167122438 167140603 + MGP_C3HHeJ_P0058712 Gdap1l1 protein_coding protein_coding MGP_C3HHeJ_T0058713.1 MGP_C3HHeJ_G0026539.1 mouse_genomes_project 2 167122493 167140445 + MGP_C3HHeJ_P0058713 Gdap1l1 protein_coding protein_coding MGP_C3HHeJ_T0003968.1 MGP_C3HHeJ_G0003525.1 mouse_genomes_project 2 103446555 103455388 - Gm13872 antisense antisense MGP_C3HHeJ_T0003969.1 MGP_C3HHeJ_G0003525.1 mouse_genomes_project 2 103452296 103455375 - Gm13872 antisense antisense MGP_C3HHeJ_T0003970.1 MGP_C3HHeJ_G0003525.1 mouse_genomes_project 2 103453283 103455389 - Gm13872 antisense antisense MGP_C3HHeJ_T0001003.1 MGP_C3HHeJ_G0000940.1 mouse_genomes_project 2 9688256 9691302 - TEC TEC MGP_C3HHeJ_T0055428.1 MGP_C3HHeJ_G0025678.1 mouse_genomes_project 2 85800986 85801943 + MGP_C3HHeJ_P0055428 Olfr1030 protein_coding protein_coding MGP_C3HHeJ_T0101924.1 MGP_C3HHeJ_G0039889.1 mouse_genomes_project 2 120807684 120807925 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0053663.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29594809 29640502 + MGP_C3HHeJ_P0053663 Fubp3 protein_coding protein_coding MGP_C3HHeJ_T0053664.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29594949 29617423 + MGP_C3HHeJ_P0053664 Fubp3 protein_coding protein_coding MGP_C3HHeJ_T0053665.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29594950 29607060 + Fubp3 protein_coding retained_intron MGP_C3HHeJ_T0053666.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29594972 29620714 + MGP_C3HHeJ_P0053666 Fubp3 protein_coding protein_coding MGP_C3HHeJ_T0053667.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29594975 29640495 + MGP_C3HHeJ_P0053667 Fubp3 protein_coding protein_coding MGP_C3HHeJ_T0053668.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29594985 29620700 + MGP_C3HHeJ_P0053668 Fubp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053669.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29625422 29636088 + MGP_C3HHeJ_P0053669 Fubp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053670.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29626857 29638913 + MGP_C3HHeJ_P0053670 Fubp3 protein_coding protein_coding MGP_C3HHeJ_T0053671.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29635511 29639692 + MGP_C3HHeJ_P0053671 Fubp3 protein_coding protein_coding MGP_C3HHeJ_T0053672.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29637741 29640494 + MGP_C3HHeJ_P0053672 Fubp3 protein_coding protein_coding MGP_C3HHeJ_T0053673.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29638159 29640496 + Fubp3 protein_coding retained_intron MGP_C3HHeJ_T0001008.1 MGP_C3HHeJ_G0000945.1 mouse_genomes_project 2 10356497 10360456 + TEC TEC MGP_C3HHeJ_T0098402.1 MGP_C3HHeJ_G0036608.1 mouse_genomes_project 2 164153261 164155099 + Gm14222 sense_intronic sense_intronic MGP_C3HHeJ_T0055031.1 MGP_C3HHeJ_G0025570.1 mouse_genomes_project 2 72939931 72965973 - MGP_C3HHeJ_P0055031 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055032.1 MGP_C3HHeJ_G0025570.1 mouse_genomes_project 2 72948718 72998355 - MGP_C3HHeJ_P0055032 protein_coding protein_coding MGP_C3HHeJ_T0055033.1 MGP_C3HHeJ_G0025570.1 mouse_genomes_project 2 72955712 72963875 - MGP_C3HHeJ_P0055033 protein_coding protein_coding MGP_C3HHeJ_T0055034.1 MGP_C3HHeJ_G0025570.1 mouse_genomes_project 2 72955772 73042746 - protein_coding processed_transcript MGP_C3HHeJ_T0055035.1 MGP_C3HHeJ_G0025570.1 mouse_genomes_project 2 72959192 73042649 - protein_coding processed_transcript MGP_C3HHeJ_T0100480.1 MGP_C3HHeJ_G0038674.1 mouse_genomes_project 2 129761223 129761281 + Gm22889 snoRNA snoRNA MGP_C3HHeJ_T0013491.1 MGP_C3HHeJ_G0011595.1 mouse_genomes_project 2 83533786 83535039 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052574.1 MGP_C3HHeJ_G0025133.1 mouse_genomes_project 2 20871708 20959362 + MGP_C3HHeJ_P0052574 Nxph2 protein_coding protein_coding MGP_C3HHeJ_T0054788.1 MGP_C3HHeJ_G0025524.1 mouse_genomes_project 2 67951175 67982515 + MGP_C3HHeJ_P0054788 4932414N04Rik protein_coding protein_coding MGP_C3HHeJ_T0054789.1 MGP_C3HHeJ_G0025524.1 mouse_genomes_project 2 67952573 68033132 + MGP_C3HHeJ_P0054789 4932414N04Rik protein_coding protein_coding MGP_C3HHeJ_T0054790.1 MGP_C3HHeJ_G0025524.1 mouse_genomes_project 2 67952602 67963475 + 4932414N04Rik protein_coding processed_transcript MGP_C3HHeJ_T0054791.1 MGP_C3HHeJ_G0025524.1 mouse_genomes_project 2 67954527 68033130 + MGP_C3HHeJ_P0054791 4932414N04Rik protein_coding protein_coding MGP_C3HHeJ_T0054792.1 MGP_C3HHeJ_G0025524.1 mouse_genomes_project 2 68008053 68009052 + 4932414N04Rik protein_coding retained_intron MGP_C3HHeJ_T0052512.1 MGP_C3HHeJ_G0025120.1 mouse_genomes_project 2 18750059 18775390 - MGP_C3HHeJ_P0052512 Enkur protein_coding protein_coding MGP_C3HHeJ_T0052513.1 MGP_C3HHeJ_G0025120.1 mouse_genomes_project 2 18764128 18775264 - Enkur protein_coding processed_transcript MGP_C3HHeJ_T0052514.1 MGP_C3HHeJ_G0025120.1 mouse_genomes_project 2 18766482 18775377 - Enkur protein_coding processed_transcript MGP_C3HHeJ_T0007322.1 MGP_C3HHeJ_G0005999.1 mouse_genomes_project 2 172131505 172133416 - E130018N17Rik lincRNA lincRNA MGP_C3HHeJ_T0013546.1 MGP_C3HHeJ_G0011650.1 mouse_genomes_project 2 104263130 104263560 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055774.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91602794 91608388 + MGP_C3HHeJ_P0055774 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055775.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91602955 91603969 + Pacsin3 protein_coding retained_intron MGP_C3HHeJ_T0055776.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91602984 91607360 + MGP_C3HHeJ_P0055776 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055777.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91603002 91611499 + MGP_C3HHeJ_P0055777 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055778.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91603653 91608065 + MGP_C3HHeJ_P0055778 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055779.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91603653 91611498 + MGP_C3HHeJ_P0055779 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055780.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91603653 91611499 + MGP_C3HHeJ_P0055780 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055781.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91603678 91608154 + MGP_C3HHeJ_P0055781 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055782.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91604169 91611499 + MGP_C3HHeJ_P0055782 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055783.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91604175 91608120 + MGP_C3HHeJ_P0055783 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055784.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91606024 91607048 + Pacsin3 protein_coding processed_transcript MGP_C3HHeJ_T0055785.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91606647 91608417 + MGP_C3HHeJ_P0055785 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055786.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91607623 91608488 + Pacsin3 protein_coding retained_intron MGP_C3HHeJ_T0055787.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91609732 91610353 + Pacsin3 protein_coding retained_intron MGP_C3HHeJ_T0055788.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91609925 91611179 + MGP_C3HHeJ_P0055788 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0000988.1 MGP_C3HHeJ_G0000925.1 mouse_genomes_project 2 753308 754660 - TEC TEC MGP_C3HHeJ_T0013725.1 MGP_C3HHeJ_G0011829.1 mouse_genomes_project 2 176282411 176283026 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098102.1 MGP_C3HHeJ_G0036314.1 mouse_genomes_project 2 74471746 74471846 - n-R5s198 rRNA rRNA MGP_C3HHeJ_T0017537.1 MGP_C3HHeJ_G0015172.1 mouse_genomes_project 2 28254226 28273141 - Gm14471 processed_transcript processed_transcript MGP_C3HHeJ_T0054175.1 MGP_C3HHeJ_G0025404.1 mouse_genomes_project 2 34907498 34908434 + MGP_C3HHeJ_P0054175 Olfr345 protein_coding protein_coding MGP_C3HHeJ_T0053340.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 27662906 30394076 + Golga2 protein_coding retained_intron MGP_C3HHeJ_T0053756.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 30370706 30382597 + MGP_C3HHeJ_P0053756 Golga2 protein_coding protein_coding MGP_C3HHeJ_T0053757.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 30371575 30394087 + MGP_C3HHeJ_P0053757 Golga2 protein_coding protein_coding MGP_C3HHeJ_T0053758.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 30371635 30394078 + MGP_C3HHeJ_P0053758 Golga2 protein_coding protein_coding MGP_C3HHeJ_T0053759.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 30371655 30389125 + MGP_C3HHeJ_P0053759 Golga2 protein_coding protein_coding MGP_C3HHeJ_T0053760.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 30371668 30394079 + MGP_C3HHeJ_P0053760 Golga2 protein_coding protein_coding MGP_C3HHeJ_T0053761.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 30371673 30384131 + MGP_C3HHeJ_P0053761 Golga2 protein_coding protein_coding MGP_C3HHeJ_T0053762.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 30371677 30388366 + MGP_C3HHeJ_P0053762 Golga2 protein_coding protein_coding MGP_C3HHeJ_T0053763.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 30383609 30384092 + Golga2 protein_coding retained_intron MGP_C3HHeJ_T0053764.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 30386033 30389115 + Golga2 protein_coding retained_intron MGP_C3HHeJ_T0101893.1 MGP_C3HHeJ_G0039858.1 mouse_genomes_project 2 85448764 85449218 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0003883.1 MGP_C3HHeJ_G0003466.1 mouse_genomes_project 2 31789653 31791054 + C130021I20Rik antisense antisense MGP_C3HHeJ_T0003884.1 MGP_C3HHeJ_G0003466.1 mouse_genomes_project 2 31789791 31794815 + C130021I20Rik antisense antisense MGP_C3HHeJ_T0054311.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 38968433 38989314 - Lrp1b protein_coding processed_transcript MGP_C3HHeJ_T0054312.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 38968435 41094005 - MGP_C3HHeJ_P0054312 Lrp1b protein_coding protein_coding MGP_C3HHeJ_T0054313.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 38968721 39006636 - MGP_C3HHeJ_P0054313 Lrp1b protein_coding protein_coding MGP_C3HHeJ_T0054314.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 38968721 39086279 - MGP_C3HHeJ_P0054314 Lrp1b protein_coding protein_coding MGP_C3HHeJ_T0054315.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 38973464 39037953 - MGP_C3HHeJ_P0054315 Lrp1b protein_coding protein_coding MGP_C3HHeJ_T0054316.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 39060540 39083256 - Lrp1b protein_coding retained_intron MGP_C3HHeJ_T0054317.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 39191913 40200551 - MGP_C3HHeJ_P0054317 Lrp1b protein_coding protein_coding MGP_C3HHeJ_T0054318.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 39686934 41093437 - MGP_C3HHeJ_P0054318 Lrp1b protein_coding protein_coding MGP_C3HHeJ_T0054319.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 39910502 41093453 - Lrp1b protein_coding retained_intron MGP_C3HHeJ_T0054320.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 40478839 41093306 - MGP_C3HHeJ_P0054320 Lrp1b protein_coding protein_coding MGP_C3HHeJ_T0054321.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 40748333 41093636 - Lrp1b protein_coding retained_intron MGP_C3HHeJ_T0054322.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 41090244 41093395 - MGP_C3HHeJ_P0054322 Lrp1b protein_coding protein_coding MGP_C3HHeJ_T0056360.1 MGP_C3HHeJ_G0026009.1 mouse_genomes_project 2 113610351 113646368 + MGP_C3HHeJ_P0056360 Katnbl1 protein_coding protein_coding MGP_C3HHeJ_T0056361.1 MGP_C3HHeJ_G0026009.1 mouse_genomes_project 2 113610366 113639653 + Katnbl1 protein_coding retained_intron MGP_C3HHeJ_T0055407.1 MGP_C3HHeJ_G0025658.1 mouse_genomes_project 2 85207716 85208661 - MGP_C3HHeJ_P0055407 Olfr994 protein_coding protein_coding MGP_C3HHeJ_T0058047.1 MGP_C3HHeJ_G0026407.1 mouse_genomes_project 2 156333652 156347315 - MGP_C3HHeJ_P0058047 Plagl2 protein_coding protein_coding MGP_C3HHeJ_T0058048.1 MGP_C3HHeJ_G0026407.1 mouse_genomes_project 2 156333665 156343796 - MGP_C3HHeJ_P0058048 Plagl2 protein_coding protein_coding MGP_C3HHeJ_T0013346.1 MGP_C3HHeJ_G0011450.1 mouse_genomes_project 2 33569886 33570513 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010347.1 MGP_C3HHeJ_G0008480.1 mouse_genomes_project 2 93021972 93022044 + Mir7221 miRNA miRNA MGP_C3HHeJ_T0017689.1 MGP_C3HHeJ_G0015250.1 mouse_genomes_project 2 165121927 165122250 - Gm29229 processed_transcript processed_transcript MGP_C3HHeJ_T0013409.1 MGP_C3HHeJ_G0011513.1 mouse_genomes_project 2 55969504 55970194 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055553.1 MGP_C3HHeJ_G0025789.1 mouse_genomes_project 2 88874579 88875506 - MGP_C3HHeJ_P0055553 Olfr1198 protein_coding protein_coding MGP_C3HHeJ_T0055409.1 MGP_C3HHeJ_G0025660.1 mouse_genomes_project 2 85254545 85289758 - MGP_C3HHeJ_P0055409 4833423E24Rik protein_coding protein_coding MGP_C3HHeJ_T0013726.1 MGP_C3HHeJ_G0011830.1 mouse_genomes_project 2 178302898 178303108 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055120.1 MGP_C3HHeJ_G0025596.1 mouse_genomes_project 2 75975623 75991900 + MGP_C3HHeJ_P0055120 Rbm45 protein_coding protein_coding MGP_C3HHeJ_T0013402.1 MGP_C3HHeJ_G0011506.1 mouse_genomes_project 2 53087642 53088459 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057170.1 MGP_C3HHeJ_G0026181.1 mouse_genomes_project 2 129614380 129629399 - MGP_C3HHeJ_P0057170 Prom2 protein_coding protein_coding MGP_C3HHeJ_T0057171.1 MGP_C3HHeJ_G0026181.1 mouse_genomes_project 2 129614862 129629317 - MGP_C3HHeJ_P0057171 Prom2 protein_coding protein_coding MGP_C3HHeJ_T0057172.1 MGP_C3HHeJ_G0026181.1 mouse_genomes_project 2 129622702 129623134 - Prom2 protein_coding processed_transcript MGP_C3HHeJ_T0057173.1 MGP_C3HHeJ_G0026181.1 mouse_genomes_project 2 129628169 129629346 - Prom2 protein_coding retained_intron MGP_C3HHeJ_T0004098.1 MGP_C3HHeJ_G0003618.1 mouse_genomes_project 2 171606712 171613376 + Gm14320 antisense antisense MGP_C3HHeJ_T0013373.1 MGP_C3HHeJ_G0011477.1 mouse_genomes_project 2 39401947 39402300 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004119.1 MGP_C3HHeJ_G0003633.1 mouse_genomes_project 2 185556110 185569304 + Gm14341 antisense antisense MGP_C3HHeJ_T0058067.1 MGP_C3HHeJ_G0026412.1 mouse_genomes_project 2 156628892 156629944 + MGP_C3HHeJ_P0058067 4930404H24Rik protein_coding protein_coding MGP_C3HHeJ_T0057130.1 MGP_C3HHeJ_G0026171.1 mouse_genomes_project 2 129286291 129300883 + Snrnp200 protein_coding retained_intron MGP_C3HHeJ_T0057131.1 MGP_C3HHeJ_G0026171.1 mouse_genomes_project 2 129286304 129320278 + MGP_C3HHeJ_P0057131 Snrnp200 protein_coding protein_coding MGP_C3HHeJ_T0057132.1 MGP_C3HHeJ_G0026171.1 mouse_genomes_project 2 129299856 129304834 + Snrnp200 protein_coding processed_transcript MGP_C3HHeJ_T0057133.1 MGP_C3HHeJ_G0026171.1 mouse_genomes_project 2 129316673 129318138 + Snrnp200 protein_coding retained_intron MGP_C3HHeJ_T0057134.1 MGP_C3HHeJ_G0026171.1 mouse_genomes_project 2 129317903 129319787 + Snrnp200 protein_coding retained_intron MGP_C3HHeJ_T0056523.1 MGP_C3HHeJ_G0026050.1 mouse_genomes_project 2 120560607 120584005 + MGP_C3HHeJ_P0056523 Casc5 protein_coding protein_coding MGP_C3HHeJ_T0056524.1 MGP_C3HHeJ_G0026050.1 mouse_genomes_project 2 120560607 120619931 + MGP_C3HHeJ_P0056524 Casc5 protein_coding protein_coding MGP_C3HHeJ_T0056525.1 MGP_C3HHeJ_G0026050.1 mouse_genomes_project 2 120560635 120580703 + MGP_C3HHeJ_P0056525 Casc5 protein_coding protein_coding MGP_C3HHeJ_T0056526.1 MGP_C3HHeJ_G0026050.1 mouse_genomes_project 2 120560638 120587652 + MGP_C3HHeJ_P0056526 Casc5 protein_coding protein_coding MGP_C3HHeJ_T0056527.1 MGP_C3HHeJ_G0026050.1 mouse_genomes_project 2 120570917 120622128 + MGP_C3HHeJ_P0056527 Casc5 protein_coding protein_coding MGP_C3HHeJ_T0098282.1 MGP_C3HHeJ_G0036494.1 mouse_genomes_project 2 107679667 107679791 + Gm22813 scaRNA scaRNA MGP_C3HHeJ_T0001061.1 MGP_C3HHeJ_G0000998.1 mouse_genomes_project 2 119508756 119514635 + TEC TEC MGP_C3HHeJ_T0055324.1 MGP_C3HHeJ_G0025632.1 mouse_genomes_project 2 84400980 84403344 + Btbd18 protein_coding processed_transcript MGP_C3HHeJ_T0055325.1 MGP_C3HHeJ_G0025632.1 mouse_genomes_project 2 84401447 84409883 + MGP_C3HHeJ_P0055325 Btbd18 protein_coding protein_coding MGP_C3HHeJ_T0056387.1 MGP_C3HHeJ_G0026017.1 mouse_genomes_project 2 115047091 115098118 - MGP_C3HHeJ_P0056387 Scg5 protein_coding protein_coding MGP_C3HHeJ_T0056388.1 MGP_C3HHeJ_G0026017.1 mouse_genomes_project 2 115096329 115097753 - Scg5 protein_coding processed_transcript MGP_C3HHeJ_T0054079.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33334209 33406019 + MGP_C3HHeJ_P0054079 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054080.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33334209 33406731 + MGP_C3HHeJ_P0054080 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054081.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33334209 33357158 + MGP_C3HHeJ_P0054081 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054082.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33334325 33406729 + MGP_C3HHeJ_P0054082 Cntrl protein_coding unknown_likely_coding MGP_C3HHeJ_T0054083.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33334336 33406331 + MGP_C3HHeJ_P0054083 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054084.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33352630 33374418 + MGP_C3HHeJ_P0054084 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054085.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33358664 33387383 + MGP_C3HHeJ_P0054085 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054086.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33358664 33406731 + MGP_C3HHeJ_P0054086 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054087.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33358688 33364120 + MGP_C3HHeJ_P0054087 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054088.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33358688 33374418 + MGP_C3HHeJ_P0054088 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054089.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33371842 33374418 + MGP_C3HHeJ_P0054089 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054090.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33387054 33392855 + MGP_C3HHeJ_P0054090 Cntrl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054091.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33388805 33393283 + Cntrl protein_coding retained_intron MGP_C3HHeJ_T0054092.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33403156 33406720 + Cntrl protein_coding retained_intron MGP_C3HHeJ_T0013338.1 MGP_C3HHeJ_G0011442.1 mouse_genomes_project 2 30352635 30354007 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017545.1 MGP_C3HHeJ_G0015177.1 mouse_genomes_project 2 33795767 33804932 - Gm13446 processed_transcript processed_transcript MGP_C3HHeJ_T0017546.1 MGP_C3HHeJ_G0015177.1 mouse_genomes_project 2 33801078 33804715 - Gm13446 processed_transcript processed_transcript MGP_C3HHeJ_T0100490.1 MGP_C3HHeJ_G0038684.1 mouse_genomes_project 2 146960173 146960311 - Gm26165 snoRNA snoRNA MGP_C3HHeJ_T0053838.1 MGP_C3HHeJ_G0025346.1 mouse_genomes_project 2 30676889 30677900 + Pip5kl1 protein_coding processed_transcript MGP_C3HHeJ_T0053839.1 MGP_C3HHeJ_G0025346.1 mouse_genomes_project 2 30677810 30685900 + MGP_C3HHeJ_P0053839 Pip5kl1 protein_coding protein_coding MGP_C3HHeJ_T0053840.1 MGP_C3HHeJ_G0025346.1 mouse_genomes_project 2 30677935 30685889 + MGP_C3HHeJ_P0053840 Pip5kl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053841.1 MGP_C3HHeJ_G0025346.1 mouse_genomes_project 2 30682044 30685890 + Pip5kl1 protein_coding retained_intron MGP_C3HHeJ_T0052356.1 MGP_C3HHeJ_G0025095.1 mouse_genomes_project 2 11579839 11696735 + MGP_C3HHeJ_P0052356 Mrc1 protein_coding protein_coding MGP_C3HHeJ_T0052357.1 MGP_C3HHeJ_G0025095.1 mouse_genomes_project 2 11693238 11696605 + Mrc1 protein_coding retained_intron MGP_C3HHeJ_T0003873.1 MGP_C3HHeJ_G0003456.1 mouse_genomes_project 2 29657855 29664992 - Gm13425 antisense antisense MGP_C3HHeJ_T0056017.1 MGP_C3HHeJ_G0025907.1 mouse_genomes_project 2 94908403 94934914 - MGP_C3HHeJ_P0056017 Api5 protein_coding protein_coding MGP_C3HHeJ_T0056018.1 MGP_C3HHeJ_G0025907.1 mouse_genomes_project 2 94912961 94934890 - Api5 protein_coding processed_transcript MGP_C3HHeJ_T0056019.1 MGP_C3HHeJ_G0025907.1 mouse_genomes_project 2 94917037 94935058 - Api5 protein_coding retained_intron MGP_C3HHeJ_T0056020.1 MGP_C3HHeJ_G0025907.1 mouse_genomes_project 2 94921778 94926708 - Api5 protein_coding processed_transcript MGP_C3HHeJ_T0010315.1 MGP_C3HHeJ_G0008448.1 mouse_genomes_project 2 30405691 30405801 + Mir199b miRNA miRNA MGP_C3HHeJ_T0059224.1 MGP_C3HHeJ_G0026674.1 mouse_genomes_project 2 177512313 177566194 - MGP_C3HHeJ_P0059224 Pmepa1 protein_coding protein_coding MGP_C3HHeJ_T0059225.1 MGP_C3HHeJ_G0026674.1 mouse_genomes_project 2 177515901 177565850 - MGP_C3HHeJ_P0059225 Pmepa1 protein_coding protein_coding MGP_C3HHeJ_T0059226.1 MGP_C3HHeJ_G0026674.1 mouse_genomes_project 2 177516066 177522577 - Pmepa1 protein_coding retained_intron MGP_C3HHeJ_T0013342.1 MGP_C3HHeJ_G0011446.1 mouse_genomes_project 2 31801920 31804168 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052000.1 MGP_C3HHeJ_G0025038.1 mouse_genomes_project 2 312220 339008 - MGP_C3HHeJ_P0052000 Olah protein_coding protein_coding MGP_C3HHeJ_T0052001.1 MGP_C3HHeJ_G0025038.1 mouse_genomes_project 2 312225 369433 - MGP_C3HHeJ_P0052001 Olah protein_coding protein_coding MGP_C3HHeJ_T0052002.1 MGP_C3HHeJ_G0025038.1 mouse_genomes_project 2 312255 338986 - MGP_C3HHeJ_P0052002 Olah protein_coding protein_coding MGP_C3HHeJ_T0007257.1 MGP_C3HHeJ_G0005945.1 mouse_genomes_project 2 139717198 139757888 + Gm14055 lincRNA lincRNA MGP_C3HHeJ_T0059324.1 MGP_C3HHeJ_G0026701.1 mouse_genomes_project 2 184615104 184630307 + MGP_C3HHeJ_P0059324 protein_coding unknown_likely_coding MGP_C3HHeJ_T0059325.1 MGP_C3HHeJ_G0026701.1 mouse_genomes_project 2 184615120 184630429 + protein_coding retained_intron MGP_C3HHeJ_T0059326.1 MGP_C3HHeJ_G0026701.1 mouse_genomes_project 2 184615124 184625243 + protein_coding retained_intron MGP_C3HHeJ_T0059327.1 MGP_C3HHeJ_G0026701.1 mouse_genomes_project 2 184615124 184630436 + MGP_C3HHeJ_P0059327 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059328.1 MGP_C3HHeJ_G0026701.1 mouse_genomes_project 2 184623235 184627508 + protein_coding retained_intron MGP_C3HHeJ_T0059329.1 MGP_C3HHeJ_G0026701.1 mouse_genomes_project 2 184627521 184630434 + protein_coding retained_intron MGP_C3HHeJ_T0010297.1 MGP_C3HHeJ_G0008430.1 mouse_genomes_project 2 22704521 22704584 + Mir7664 miRNA miRNA MGP_C3HHeJ_T0101392.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177884148 177965999 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101393.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177885266 177965999 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101394.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177886027 177934740 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101395.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177889731 177965999 - transcribed_unprocessed_pseudogene retained_intron MGP_C3HHeJ_T0101396.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177890678 177895573 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101397.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177891411 177896124 - transcribed_unprocessed_pseudogene retained_intron MGP_C3HHeJ_T0101398.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177900916 177965999 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101399.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177900916 177965828 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101400.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177901943 177913630 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101401.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177901957 177966100 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101402.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177913291 177965964 - transcribed_unprocessed_pseudogene retained_intron MGP_C3HHeJ_T0101403.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177920509 177965995 - transcribed_unprocessed_pseudogene retained_intron MGP_C3HHeJ_T0101929.1 MGP_C3HHeJ_G0039894.1 mouse_genomes_project 2 141667716 141667945 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0052988.1 MGP_C3HHeJ_G0025213.1 mouse_genomes_project 2 23941858 23970614 - MGP_C3HHeJ_P0052988 Qsox2 protein_coding protein_coding MGP_C3HHeJ_T0052989.1 MGP_C3HHeJ_G0025213.1 mouse_genomes_project 2 23941860 23970787 - MGP_C3HHeJ_P0052989 Qsox2 protein_coding protein_coding MGP_C3HHeJ_T0054416.1 MGP_C3HHeJ_G0025457.1 mouse_genomes_project 2 48741251 48868875 + MGP_C3HHeJ_P0054416 Lypd6 protein_coding protein_coding MGP_C3HHeJ_T0054417.1 MGP_C3HHeJ_G0025457.1 mouse_genomes_project 2 48741284 48865976 + MGP_C3HHeJ_P0054417 Lypd6 protein_coding protein_coding MGP_C3HHeJ_T0054418.1 MGP_C3HHeJ_G0025457.1 mouse_genomes_project 2 48741286 48868870 + MGP_C3HHeJ_P0054418 Lypd6 protein_coding protein_coding MGP_C3HHeJ_T0054419.1 MGP_C3HHeJ_G0025457.1 mouse_genomes_project 2 48802767 48868869 + MGP_C3HHeJ_P0054419 Lypd6 protein_coding protein_coding MGP_C3HHeJ_T0054420.1 MGP_C3HHeJ_G0025457.1 mouse_genomes_project 2 48840252 48849366 + MGP_C3HHeJ_P0054420 Lypd6 protein_coding protein_coding MGP_C3HHeJ_T0007241.1 MGP_C3HHeJ_G0005932.1 mouse_genomes_project 2 130341668 130343646 - Gm14012 lincRNA lincRNA MGP_C3HHeJ_T0059217.1 MGP_C3HHeJ_G0026672.1 mouse_genomes_project 2 177439567 177445793 + MGP_C3HHeJ_P0059217 Pck1 protein_coding protein_coding MGP_C3HHeJ_T0059218.1 MGP_C3HHeJ_G0026672.1 mouse_genomes_project 2 177439592 177441329 + Pck1 protein_coding processed_transcript MGP_C3HHeJ_T0059219.1 MGP_C3HHeJ_G0026672.1 mouse_genomes_project 2 177439592 177440979 + Pck1 protein_coding retained_intron MGP_C3HHeJ_T0059220.1 MGP_C3HHeJ_G0026672.1 mouse_genomes_project 2 177439601 177445791 + Pck1 protein_coding retained_intron MGP_C3HHeJ_T0055254.1 MGP_C3HHeJ_G0025618.1 mouse_genomes_project 2 80358604 80374462 + MGP_C3HHeJ_P0055254 Dusp19 protein_coding protein_coding MGP_C3HHeJ_T0055255.1 MGP_C3HHeJ_G0025618.1 mouse_genomes_project 2 80358659 80374531 + Dusp19 protein_coding processed_transcript MGP_C3HHeJ_T0055256.1 MGP_C3HHeJ_G0025618.1 mouse_genomes_project 2 80358785 80373625 + Dusp19 protein_coding processed_transcript MGP_C3HHeJ_T0055257.1 MGP_C3HHeJ_G0025618.1 mouse_genomes_project 2 80358790 80366900 + Dusp19 protein_coding processed_transcript MGP_C3HHeJ_T0055259.1 MGP_C3HHeJ_G0025618.1 mouse_genomes_project 2 80358825 80375169 + Dusp19 protein_coding processed_transcript MGP_C3HHeJ_T0017505.1 MGP_C3HHeJ_G0015154.1 mouse_genomes_project 2 1270206 1285958 - Gm13187 processed_transcript processed_transcript MGP_C3HHeJ_T0017506.1 MGP_C3HHeJ_G0015154.1 mouse_genomes_project 2 1274444 1286013 - Gm13187 processed_transcript processed_transcript MGP_C3HHeJ_T0017507.1 MGP_C3HHeJ_G0015154.1 mouse_genomes_project 2 1285356 1286013 - Gm13187 processed_transcript processed_transcript MGP_C3HHeJ_T0051997.1 MGP_C3HHeJ_G0025036.1 mouse_genomes_project 2 298184 301879 - MGP_C3HHeJ_P0051997 Rpp38 protein_coding protein_coding MGP_C3HHeJ_T0007169.1 MGP_C3HHeJ_G0005874.1 mouse_genomes_project 2 82193657 82209777 - A130030D18Rik lincRNA lincRNA MGP_C3HHeJ_T0013438.1 MGP_C3HHeJ_G0011542.1 mouse_genomes_project 2 66060062 66061576 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052522.1 MGP_C3HHeJ_G0025123.1 mouse_genomes_project 2 19828850 20113648 + MGP_C3HHeJ_P0052522 Myo3a protein_coding protein_coding MGP_C3HHeJ_T0052523.1 MGP_C3HHeJ_G0025123.1 mouse_genomes_project 2 19828852 19899239 + Myo3a protein_coding processed_transcript MGP_C3HHeJ_T0052524.1 MGP_C3HHeJ_G0025123.1 mouse_genomes_project 2 19828852 19890143 + Myo3a protein_coding processed_transcript MGP_C3HHeJ_T0052525.1 MGP_C3HHeJ_G0025123.1 mouse_genomes_project 2 19842455 19997910 + MGP_C3HHeJ_P0052525 Myo3a protein_coding protein_coding MGP_C3HHeJ_T0052526.1 MGP_C3HHeJ_G0025123.1 mouse_genomes_project 2 20043978 20113643 + MGP_C3HHeJ_P0052526 Myo3a protein_coding protein_coding MGP_C3HHeJ_T0052527.1 MGP_C3HHeJ_G0025123.1 mouse_genomes_project 2 20063576 20096331 + Myo3a protein_coding processed_transcript MGP_C3HHeJ_T0055993.1 MGP_C3HHeJ_G0025902.1 mouse_genomes_project 2 94444445 94445685 - MGP_C3HHeJ_P0055993 protein_coding protein_coding MGP_C3HHeJ_T0055994.1 MGP_C3HHeJ_G0025902.1 mouse_genomes_project 2 94444451 94445837 - MGP_C3HHeJ_P0055994 protein_coding protein_coding MGP_C3HHeJ_T0059365.1 MGP_C3HHeJ_G0026710.1 mouse_genomes_project 2 185009988 185029377 + MGP_C3HHeJ_P0059365 Slco4a1 protein_coding protein_coding MGP_C3HHeJ_T0059366.1 MGP_C3HHeJ_G0026710.1 mouse_genomes_project 2 185010077 185029355 + Slco4a1 protein_coding processed_transcript MGP_C3HHeJ_T0059367.1 MGP_C3HHeJ_G0026710.1 mouse_genomes_project 2 185014738 185029377 + MGP_C3HHeJ_P0059367 Slco4a1 protein_coding protein_coding MGP_C3HHeJ_T0059368.1 MGP_C3HHeJ_G0026710.1 mouse_genomes_project 2 185020830 185022154 + Slco4a1 protein_coding retained_intron MGP_C3HHeJ_T0059369.1 MGP_C3HHeJ_G0026710.1 mouse_genomes_project 2 185026247 185029362 + Slco4a1 protein_coding retained_intron MGP_C3HHeJ_T0100482.1 MGP_C3HHeJ_G0038676.1 mouse_genomes_project 2 132226594 132226681 + snoRNA snoRNA MGP_C3HHeJ_T0017542.1 MGP_C3HHeJ_G0015175.1 mouse_genomes_project 2 30108696 30123691 - Gm16534 processed_transcript processed_transcript MGP_C3HHeJ_T0017543.1 MGP_C3HHeJ_G0015175.1 mouse_genomes_project 2 30109491 30124438 - Gm16534 processed_transcript processed_transcript MGP_C3HHeJ_T0010290.1 MGP_C3HHeJ_G0008423.1 mouse_genomes_project 2 14984271 14984384 + Mir6419 miRNA miRNA MGP_C3HHeJ_T0052009.1 MGP_C3HHeJ_G0025040.1 mouse_genomes_project 2 396145 435086 + MGP_C3HHeJ_P0052009 Dclre1c protein_coding protein_coding MGP_C3HHeJ_T0052010.1 MGP_C3HHeJ_G0025040.1 mouse_genomes_project 2 396145 438105 + MGP_C3HHeJ_P0052010 Dclre1c protein_coding protein_coding MGP_C3HHeJ_T0052011.1 MGP_C3HHeJ_G0025040.1 mouse_genomes_project 2 396164 411318 + Dclre1c protein_coding processed_transcript MGP_C3HHeJ_T0052012.1 MGP_C3HHeJ_G0025040.1 mouse_genomes_project 2 396164 428067 + MGP_C3HHeJ_P0052012 Dclre1c protein_coding protein_coding MGP_C3HHeJ_T0052013.1 MGP_C3HHeJ_G0025040.1 mouse_genomes_project 2 396179 411356 + Dclre1c protein_coding processed_transcript MGP_C3HHeJ_T0052014.1 MGP_C3HHeJ_G0025040.1 mouse_genomes_project 2 396179 435078 + MGP_C3HHeJ_P0052014 Dclre1c protein_coding protein_coding MGP_C3HHeJ_T0052015.1 MGP_C3HHeJ_G0025040.1 mouse_genomes_project 2 396216 416181 + Dclre1c protein_coding retained_intron MGP_C3HHeJ_T0052016.1 MGP_C3HHeJ_G0025040.1 mouse_genomes_project 2 414803 432896 + MGP_C3HHeJ_P0052016 Dclre1c protein_coding protein_coding MGP_C3HHeJ_T0052017.1 MGP_C3HHeJ_G0025040.1 mouse_genomes_project 2 426923 427842 + Dclre1c protein_coding processed_transcript MGP_C3HHeJ_T0057840.1 MGP_C3HHeJ_G0026346.1 mouse_genomes_project 2 153537106 153545636 + MGP_C3HHeJ_P0057840 Cst7 protein_coding protein_coding MGP_C3HHeJ_T0055359.1 MGP_C3HHeJ_G0025644.1 mouse_genomes_project 2 84592113 84617541 + MGP_C3HHeJ_P0055359 Slc43a1 protein_coding protein_coding MGP_C3HHeJ_T0055360.1 MGP_C3HHeJ_G0025644.1 mouse_genomes_project 2 84592658 84604127 + MGP_C3HHeJ_P0055360 Slc43a1 protein_coding protein_coding MGP_C3HHeJ_T0055361.1 MGP_C3HHeJ_G0025644.1 mouse_genomes_project 2 84592671 84617549 + MGP_C3HHeJ_P0055361 Slc43a1 protein_coding protein_coding MGP_C3HHeJ_T0055362.1 MGP_C3HHeJ_G0025644.1 mouse_genomes_project 2 84592680 84616351 + Slc43a1 protein_coding retained_intron MGP_C3HHeJ_T0055363.1 MGP_C3HHeJ_G0025644.1 mouse_genomes_project 2 84593461 84617544 + MGP_C3HHeJ_P0055363 Slc43a1 protein_coding protein_coding MGP_C3HHeJ_T0055364.1 MGP_C3HHeJ_G0025644.1 mouse_genomes_project 2 84593887 84617557 + MGP_C3HHeJ_P0055364 Slc43a1 protein_coding protein_coding MGP_C3HHeJ_T0013576.1 MGP_C3HHeJ_G0011680.1 mouse_genomes_project 2 113057810 113058625 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004062.1 MGP_C3HHeJ_G0003591.1 mouse_genomes_project 2 158878000 158880328 + Gssos2 antisense antisense MGP_C3HHeJ_T0004063.1 MGP_C3HHeJ_G0003591.1 mouse_genomes_project 2 158879384 158880314 + Gssos2 antisense antisense MGP_C3HHeJ_T0055447.1 MGP_C3HHeJ_G0025697.1 mouse_genomes_project 2 86230288 86231230 - MGP_C3HHeJ_P0055447 Olfr1056 protein_coding protein_coding MGP_C3HHeJ_T0055437.1 MGP_C3HHeJ_G0025687.1 mouse_genomes_project 2 86023948 86024908 - MGP_C3HHeJ_P0055437 Olfr52 protein_coding protein_coding MGP_C3HHeJ_T0003902.1 MGP_C3HHeJ_G0003480.1 mouse_genomes_project 2 57101805 57111066 + Gm13546 antisense antisense MGP_C3HHeJ_T0003903.1 MGP_C3HHeJ_G0003480.1 mouse_genomes_project 2 57103755 57110340 + Gm13546 antisense antisense MGP_C3HHeJ_T0055960.1 MGP_C3HHeJ_G0025898.1 mouse_genomes_project 2 94123773 94163722 + MGP_C3HHeJ_P0055960 Alx4 protein_coding protein_coding MGP_C3HHeJ_T0055961.1 MGP_C3HHeJ_G0025898.1 mouse_genomes_project 2 94123777 94163722 + MGP_C3HHeJ_P0055961 Alx4 protein_coding protein_coding MGP_C3HHeJ_T0054957.1 MGP_C3HHeJ_G0025556.1 mouse_genomes_project 2 70938329 70944191 + MGP_C3HHeJ_P0054957 Dlx1 protein_coding protein_coding MGP_C3HHeJ_T0054958.1 MGP_C3HHeJ_G0025556.1 mouse_genomes_project 2 70938899 70940282 + MGP_C3HHeJ_P0054958 Dlx1 protein_coding protein_coding MGP_C3HHeJ_T0054959.1 MGP_C3HHeJ_G0025556.1 mouse_genomes_project 2 70939317 70940448 + MGP_C3HHeJ_P0054959 Dlx1 protein_coding protein_coding MGP_C3HHeJ_T0054960.1 MGP_C3HHeJ_G0025556.1 mouse_genomes_project 2 70940069 70942736 + MGP_C3HHeJ_P0054960 Dlx1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054961.1 MGP_C3HHeJ_G0025556.1 mouse_genomes_project 2 70940163 70944192 + Dlx1 protein_coding retained_intron MGP_C3HHeJ_T0054962.1 MGP_C3HHeJ_G0025556.1 mouse_genomes_project 2 70940996 70942905 + Dlx1 protein_coding retained_intron MGP_C3HHeJ_T0059197.1 MGP_C3HHeJ_G0026666.1 mouse_genomes_project 2 176778492 176779895 + protein_coding processed_transcript MGP_C3HHeJ_T0057341.1 MGP_C3HHeJ_G0026225.1 mouse_genomes_project 2 132626802 132732854 + MGP_C3HHeJ_P0057341 Ptpra protein_coding protein_coding MGP_C3HHeJ_T0057342.1 MGP_C3HHeJ_G0026225.1 mouse_genomes_project 2 132650561 132737595 + MGP_C3HHeJ_P0057342 Ptpra protein_coding protein_coding MGP_C3HHeJ_T0017598.1 MGP_C3HHeJ_G0015212.1 mouse_genomes_project 2 105327676 105337650 + Platr14 processed_transcript processed_transcript MGP_C3HHeJ_T0017599.1 MGP_C3HHeJ_G0015212.1 mouse_genomes_project 2 105327692 105337647 + Platr14 processed_transcript processed_transcript MGP_C3HHeJ_T0017600.1 MGP_C3HHeJ_G0015212.1 mouse_genomes_project 2 105327697 105341040 + Platr14 processed_transcript processed_transcript MGP_C3HHeJ_T0017601.1 MGP_C3HHeJ_G0015212.1 mouse_genomes_project 2 105327705 105337723 + Platr14 processed_transcript processed_transcript MGP_C3HHeJ_T0017602.1 MGP_C3HHeJ_G0015212.1 mouse_genomes_project 2 105327973 105337644 + Platr14 processed_transcript processed_transcript MGP_C3HHeJ_T0017603.1 MGP_C3HHeJ_G0015212.1 mouse_genomes_project 2 105336782 105338429 + Platr14 processed_transcript processed_transcript MGP_C3HHeJ_T0013383.1 MGP_C3HHeJ_G0011487.1 mouse_genomes_project 2 47441715 47442686 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004033.1 MGP_C3HHeJ_G0003567.1 mouse_genomes_project 2 143827958 143833610 - Macrod2os2 antisense antisense MGP_C3HHeJ_T0004035.1 MGP_C3HHeJ_G0003567.1 mouse_genomes_project 2 143830272 143830659 - Macrod2os2 antisense antisense MGP_C3HHeJ_T0013336.1 MGP_C3HHeJ_G0011440.1 mouse_genomes_project 2 29684798 29685756 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013355.1 MGP_C3HHeJ_G0011459.1 mouse_genomes_project 2 35780319 35781089 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057031.1 MGP_C3HHeJ_G0026149.1 mouse_genomes_project 2 127532037 127597017 - MGP_C3HHeJ_P0057031 Cep152 protein_coding unknown_likely_coding MGP_C3HHeJ_T0057032.1 MGP_C3HHeJ_G0026149.1 mouse_genomes_project 2 127532042 127597156 - MGP_C3HHeJ_P0057032 Cep152 protein_coding protein_coding MGP_C3HHeJ_T0003860.1 MGP_C3HHeJ_G0003445.1 mouse_genomes_project 2 24791783 24795352 + Gm13398 antisense antisense MGP_C3HHeJ_T0055922.1 MGP_C3HHeJ_G0025889.1 mouse_genomes_project 2 92832413 92862852 - MGP_C3HHeJ_P0055922 Cry2 protein_coding protein_coding MGP_C3HHeJ_T0055923.1 MGP_C3HHeJ_G0025889.1 mouse_genomes_project 2 92840085 92862845 - MGP_C3HHeJ_P0055923 Cry2 protein_coding protein_coding MGP_C3HHeJ_T0055924.1 MGP_C3HHeJ_G0025889.1 mouse_genomes_project 2 92853980 92862845 - Cry2 protein_coding processed_transcript MGP_C3HHeJ_T0055925.1 MGP_C3HHeJ_G0025889.1 mouse_genomes_project 2 92855730 92861201 - Cry2 protein_coding processed_transcript MGP_C3HHeJ_T0007077.1 MGP_C3HHeJ_G0005800.1 mouse_genomes_project 2 23868350 23872041 - C330006A16Rik lincRNA lincRNA MGP_C3HHeJ_T0007078.1 MGP_C3HHeJ_G0005800.1 mouse_genomes_project 2 23869902 23870322 - C330006A16Rik lincRNA lincRNA MGP_C3HHeJ_T0058572.1 MGP_C3HHeJ_G0026508.1 mouse_genomes_project 2 161714201 161749101 + MGP_C3HHeJ_P0058572 Bpi protein_coding protein_coding MGP_C3HHeJ_T0058573.1 MGP_C3HHeJ_G0026508.1 mouse_genomes_project 2 161714201 161748965 + MGP_C3HHeJ_P0058573 Bpi protein_coding protein_coding MGP_C3HHeJ_T0058574.1 MGP_C3HHeJ_G0026508.1 mouse_genomes_project 2 161714201 161749104 + MGP_C3HHeJ_P0058574 Bpi protein_coding protein_coding MGP_C3HHeJ_T0052243.1 MGP_C3HHeJ_G0025079.1 mouse_genomes_project 2 8901493 8950726 + MGP_C3HHeJ_P0052243 Il2ra protein_coding protein_coding MGP_C3HHeJ_T0052244.1 MGP_C3HHeJ_G0025079.1 mouse_genomes_project 2 8901535 8907441 + MGP_C3HHeJ_P0052244 Il2ra protein_coding protein_coding MGP_C3HHeJ_T0052246.1 MGP_C3HHeJ_G0025079.1 mouse_genomes_project 2 8937432 8937934 + Il2ra protein_coding retained_intron MGP_C3HHeJ_T0010356.1 MGP_C3HHeJ_G0008489.1 mouse_genomes_project 2 104571645 104571741 - Gm22761 miRNA miRNA MGP_C3HHeJ_T0052906.1 MGP_C3HHeJ_G0025192.1 mouse_genomes_project 2 23270841 23298677 - MGP_C3HHeJ_P0052906 Rabl6 protein_coding protein_coding MGP_C3HHeJ_T0052907.1 MGP_C3HHeJ_G0025192.1 mouse_genomes_project 2 23271934 23279834 - Rabl6 protein_coding processed_transcript MGP_C3HHeJ_T0052908.1 MGP_C3HHeJ_G0025192.1 mouse_genomes_project 2 23271934 23298621 - Rabl6 protein_coding processed_transcript MGP_C3HHeJ_T0052909.1 MGP_C3HHeJ_G0025192.1 mouse_genomes_project 2 23271958 23272884 - Rabl6 protein_coding processed_transcript MGP_C3HHeJ_T0052910.1 MGP_C3HHeJ_G0025192.1 mouse_genomes_project 2 23273012 23273647 - Rabl6 protein_coding processed_transcript MGP_C3HHeJ_T0052911.1 MGP_C3HHeJ_G0025192.1 mouse_genomes_project 2 23273497 23275797 - Rabl6 protein_coding processed_transcript MGP_C3HHeJ_T0052912.1 MGP_C3HHeJ_G0025192.1 mouse_genomes_project 2 23275934 23278621 - Rabl6 protein_coding processed_transcript MGP_C3HHeJ_T0052913.1 MGP_C3HHeJ_G0025192.1 mouse_genomes_project 2 23276016 23298641 - Rabl6 protein_coding processed_transcript MGP_C3HHeJ_T0052914.1 MGP_C3HHeJ_G0025192.1 mouse_genomes_project 2 23286337 23298612 - Rabl6 protein_coding processed_transcript MGP_C3HHeJ_T0013306.1 MGP_C3HHeJ_G0011410.1 mouse_genomes_project 2 16609559 16610957 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059132.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172632448 172754804 - MGP_C3HHeJ_P0059132 Atp9a protein_coding protein_coding MGP_C3HHeJ_T0059133.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172632448 172747420 - MGP_C3HHeJ_P0059133 Atp9a protein_coding protein_coding MGP_C3HHeJ_T0059134.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172632448 172755143 - MGP_C3HHeJ_P0059134 Atp9a protein_coding protein_coding MGP_C3HHeJ_T0059135.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172632448 172754966 - MGP_C3HHeJ_P0059135 Atp9a protein_coding protein_coding MGP_C3HHeJ_T0059136.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172632473 172754968 - MGP_C3HHeJ_P0059136 Atp9a protein_coding protein_coding MGP_C3HHeJ_T0059137.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172662233 172671273 - Atp9a protein_coding processed_transcript MGP_C3HHeJ_T0059138.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172667974 172754804 - Atp9a protein_coding retained_intron MGP_C3HHeJ_T0059139.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172693496 172755385 - MGP_C3HHeJ_P0059139 Atp9a protein_coding protein_coding MGP_C3HHeJ_T0059140.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172693504 172755419 - MGP_C3HHeJ_P0059140 Atp9a protein_coding protein_coding MGP_C3HHeJ_T0059141.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172710523 172726981 - MGP_C3HHeJ_P0059141 Atp9a protein_coding protein_coding MGP_C3HHeJ_T0059142.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172710590 172727030 - MGP_C3HHeJ_P0059142 Atp9a protein_coding protein_coding MGP_C3HHeJ_T0013269.1 MGP_C3HHeJ_G0011373.1 mouse_genomes_project 2 1951915 1952226 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056565.1 MGP_C3HHeJ_G0026059.1 mouse_genomes_project 2 120792558 120794630 - MGP_C3HHeJ_P0056565 Rhov protein_coding protein_coding MGP_C3HHeJ_T0011399.1 MGP_C3HHeJ_G0009532.1 mouse_genomes_project 2 38971554 38971724 - Gm27348 misc_RNA misc_RNA MGP_C3HHeJ_T0004071.1 MGP_C3HHeJ_G0003599.1 mouse_genomes_project 2 161647737 161651479 + 1700060C20Rik antisense antisense MGP_C3HHeJ_T0007160.1 MGP_C3HHeJ_G0005867.1 mouse_genomes_project 2 75025559 75031360 - Gm13660 lincRNA lincRNA MGP_C3HHeJ_T0058919.1 MGP_C3HHeJ_G0026605.1 mouse_genomes_project 2 168857793 168869443 - MGP_C3HHeJ_P0058919 1700025C18Rik protein_coding protein_coding MGP_C3HHeJ_T0058103.1 MGP_C3HHeJ_G0026422.1 mouse_genomes_project 2 157151346 157176891 + MGP_C3HHeJ_P0058103 Bpifa6 protein_coding protein_coding MGP_C3HHeJ_T0013581.1 MGP_C3HHeJ_G0011685.1 mouse_genomes_project 2 114648300 114648818 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053488.1 MGP_C3HHeJ_G0025297.1 mouse_genomes_project 2 28225841 28249238 + MGP_C3HHeJ_P0053488 Gm28038 protein_coding protein_coding MGP_C3HHeJ_T0101916.1 MGP_C3HHeJ_G0039881.1 mouse_genomes_project 2 89537708 89544763 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0053394.1 MGP_C3HHeJ_G0025283.1 mouse_genomes_project 2 27848865 27880699 + MGP_C3HHeJ_P0053394 Gle1 protein_coding protein_coding MGP_C3HHeJ_T0053395.1 MGP_C3HHeJ_G0025283.1 mouse_genomes_project 2 27848867 27855526 + Gle1 protein_coding retained_intron MGP_C3HHeJ_T0053396.1 MGP_C3HHeJ_G0025283.1 mouse_genomes_project 2 27848962 27856066 + Gle1 protein_coding retained_intron MGP_C3HHeJ_T0053397.1 MGP_C3HHeJ_G0025283.1 mouse_genomes_project 2 27858919 27860345 + Gle1 protein_coding retained_intron MGP_C3HHeJ_T0053398.1 MGP_C3HHeJ_G0025283.1 mouse_genomes_project 2 27859282 27861322 + Gle1 protein_coding retained_intron MGP_C3HHeJ_T0053399.1 MGP_C3HHeJ_G0025283.1 mouse_genomes_project 2 27866453 27869064 + Gle1 protein_coding retained_intron MGP_C3HHeJ_T0053400.1 MGP_C3HHeJ_G0025283.1 mouse_genomes_project 2 27875818 27878545 + Gle1 protein_coding retained_intron MGP_C3HHeJ_T0055242.1 MGP_C3HHeJ_G0025615.1 mouse_genomes_project 2 80041343 80050677 + Dnajc10 protein_coding processed_transcript MGP_C3HHeJ_T0055243.1 MGP_C3HHeJ_G0025615.1 mouse_genomes_project 2 80041343 80080157 + MGP_C3HHeJ_P0055243 Dnajc10 protein_coding protein_coding MGP_C3HHeJ_T0055244.1 MGP_C3HHeJ_G0025615.1 mouse_genomes_project 2 80057453 80059814 + Dnajc10 protein_coding processed_transcript MGP_C3HHeJ_T0055245.1 MGP_C3HHeJ_G0025615.1 mouse_genomes_project 2 80059713 80066973 + Dnajc10 protein_coding processed_transcript MGP_C3HHeJ_T0055246.1 MGP_C3HHeJ_G0025615.1 mouse_genomes_project 2 80073775 80077063 + Dnajc10 protein_coding processed_transcript MGP_C3HHeJ_T0010350.1 MGP_C3HHeJ_G0008483.1 mouse_genomes_project 2 94674783 94674885 - Gm23630 miRNA miRNA MGP_C3HHeJ_T0053438.1 MGP_C3HHeJ_G0025289.1 mouse_genomes_project 2 28029850 28058573 - MGP_C3HHeJ_P0053438 Zer1 protein_coding protein_coding MGP_C3HHeJ_T0053439.1 MGP_C3HHeJ_G0025289.1 mouse_genomes_project 2 28029850 28058445 - MGP_C3HHeJ_P0053439 Zer1 protein_coding protein_coding MGP_C3HHeJ_T0053440.1 MGP_C3HHeJ_G0025289.1 mouse_genomes_project 2 28033793 28035764 - Zer1 protein_coding retained_intron MGP_C3HHeJ_T0053441.1 MGP_C3HHeJ_G0025289.1 mouse_genomes_project 2 28034449 28036733 - Zer1 protein_coding retained_intron MGP_C3HHeJ_T0053442.1 MGP_C3HHeJ_G0025289.1 mouse_genomes_project 2 28039299 28058576 - Zer1 protein_coding retained_intron MGP_C3HHeJ_T0053443.1 MGP_C3HHeJ_G0025289.1 mouse_genomes_project 2 28039560 28058570 - Zer1 protein_coding retained_intron MGP_C3HHeJ_T0053444.1 MGP_C3HHeJ_G0025289.1 mouse_genomes_project 2 28040791 28044765 - Zer1 protein_coding retained_intron MGP_C3HHeJ_T0053445.1 MGP_C3HHeJ_G0025289.1 mouse_genomes_project 2 28041168 28041634 - Zer1 protein_coding processed_transcript MGP_C3HHeJ_T0053446.1 MGP_C3HHeJ_G0025289.1 mouse_genomes_project 2 28041506 28042534 - Zer1 protein_coding retained_intron MGP_C3HHeJ_T0013573.1 MGP_C3HHeJ_G0011677.1 mouse_genomes_project 2 112843444 112844380 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052575.1 MGP_C3HHeJ_G0025134.1 mouse_genomes_project 2 21067696 21134842 - MGP_C3HHeJ_P0052575 Spopl protein_coding protein_coding MGP_C3HHeJ_T0052576.1 MGP_C3HHeJ_G0025134.1 mouse_genomes_project 2 21072148 21134816 - MGP_C3HHeJ_P0052576 Spopl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052577.1 MGP_C3HHeJ_G0025134.1 mouse_genomes_project 2 21072746 21134716 - MGP_C3HHeJ_P0052577 Spopl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052578.1 MGP_C3HHeJ_G0025134.1 mouse_genomes_project 2 21073010 21078764 - Spopl protein_coding retained_intron MGP_C3HHeJ_T0052579.1 MGP_C3HHeJ_G0025134.1 mouse_genomes_project 2 21081343 21097765 - Spopl protein_coding retained_intron MGP_C3HHeJ_T0052580.1 MGP_C3HHeJ_G0025134.1 mouse_genomes_project 2 21103507 21134844 - MGP_C3HHeJ_P0052580 Spopl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054196.1 MGP_C3HHeJ_G0025423.1 mouse_genomes_project 2 35508563 35509493 + MGP_C3HHeJ_P0054196 Olfr366 protein_coding protein_coding MGP_C3HHeJ_T0007193.1 MGP_C3HHeJ_G0005894.1 mouse_genomes_project 2 103903091 103908195 + Gm13874 lincRNA lincRNA MGP_C3HHeJ_T0007194.1 MGP_C3HHeJ_G0005894.1 mouse_genomes_project 2 103903475 103908195 + Gm13874 lincRNA lincRNA MGP_C3HHeJ_T0007195.1 MGP_C3HHeJ_G0005894.1 mouse_genomes_project 2 103907528 103913021 + Gm13874 lincRNA lincRNA MGP_C3HHeJ_T0057477.1 MGP_C3HHeJ_G0026253.1 mouse_genomes_project 2 134165194 134182500 + MGP_C3HHeJ_P0057477 Prnp protein_coding protein_coding MGP_C3HHeJ_T0057478.1 MGP_C3HHeJ_G0026253.1 mouse_genomes_project 2 134165208 134173426 + Prnp protein_coding processed_transcript MGP_C3HHeJ_T0010318.1 MGP_C3HHeJ_G0008451.1 mouse_genomes_project 2 30791313 30791450 - Mir8093 miRNA miRNA MGP_C3HHeJ_T0010320.1 MGP_C3HHeJ_G0008453.1 mouse_genomes_project 2 30820869 30820942 - Mir3960 miRNA miRNA MGP_C3HHeJ_T0017652.1 MGP_C3HHeJ_G0015234.1 mouse_genomes_project 2 133081318 133111431 - A730017L22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017653.1 MGP_C3HHeJ_G0015234.1 mouse_genomes_project 2 133085549 133111454 - A730017L22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0100450.1 MGP_C3HHeJ_G0038644.1 mouse_genomes_project 2 41266231 41266364 + Gm24350 snoRNA snoRNA MGP_C3HHeJ_T0059473.1 MGP_C3HHeJ_G0026732.1 mouse_genomes_project 2 185829616 185844789 - MGP_C3HHeJ_P0059473 Helz2 protein_coding protein_coding MGP_C3HHeJ_T0059474.1 MGP_C3HHeJ_G0026732.1 mouse_genomes_project 2 185829617 185844787 - MGP_C3HHeJ_P0059474 Helz2 protein_coding protein_coding MGP_C3HHeJ_T0059475.1 MGP_C3HHeJ_G0026732.1 mouse_genomes_project 2 185829620 185844725 - MGP_C3HHeJ_P0059475 Helz2 protein_coding protein_coding MGP_C3HHeJ_T0059476.1 MGP_C3HHeJ_G0026732.1 mouse_genomes_project 2 185829623 185838775 - Helz2 protein_coding retained_intron MGP_C3HHeJ_T0059477.1 MGP_C3HHeJ_G0026732.1 mouse_genomes_project 2 185840177 185844787 - Helz2 protein_coding retained_intron MGP_C3HHeJ_T0101181.1 MGP_C3HHeJ_G0039329.1 mouse_genomes_project 2 163528468 163528916 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0007202.1 MGP_C3HHeJ_G0005900.1 mouse_genomes_project 2 106454740 106457571 - Paupar lincRNA lincRNA MGP_C3HHeJ_T0056021.1 MGP_C3HHeJ_G0025908.1 mouse_genomes_project 2 96830200 98172597 + MGP_C3HHeJ_P0056021 Lrrc4c protein_coding protein_coding MGP_C3HHeJ_T0056022.1 MGP_C3HHeJ_G0025908.1 mouse_genomes_project 2 96830247 98171914 + MGP_C3HHeJ_P0056022 Lrrc4c protein_coding protein_coding MGP_C3HHeJ_T0056023.1 MGP_C3HHeJ_G0025908.1 mouse_genomes_project 2 98006758 98172595 + MGP_C3HHeJ_P0056023 Lrrc4c protein_coding protein_coding MGP_C3HHeJ_T0056024.1 MGP_C3HHeJ_G0025908.1 mouse_genomes_project 2 98007191 98169994 + MGP_C3HHeJ_P0056024 Lrrc4c protein_coding protein_coding MGP_C3HHeJ_T0057786.1 MGP_C3HHeJ_G0026322.1 mouse_genomes_project 2 149985460 149994695 - MGP_C3HHeJ_P0057786 Nkx2-2 protein_coding protein_coding MGP_C3HHeJ_T0057787.1 MGP_C3HHeJ_G0026322.1 mouse_genomes_project 2 149991870 149995000 - MGP_C3HHeJ_P0057787 Nkx2-2 protein_coding protein_coding MGP_C3HHeJ_T0057788.1 MGP_C3HHeJ_G0026322.1 mouse_genomes_project 2 149994900 150002724 - Nkx2-2 protein_coding processed_transcript MGP_C3HHeJ_T0057789.1 MGP_C3HHeJ_G0026322.1 mouse_genomes_project 2 149994977 150002723 - Nkx2-2 protein_coding processed_transcript MGP_C3HHeJ_T0011418.1 MGP_C3HHeJ_G0009551.1 mouse_genomes_project 2 132893584 132893956 - Gm24893 misc_RNA misc_RNA MGP_C3HHeJ_T0017696.1 MGP_C3HHeJ_G0015255.1 mouse_genomes_project 2 172782370 172784337 + Gm14261 processed_transcript processed_transcript MGP_C3HHeJ_T0013430.1 MGP_C3HHeJ_G0011534.1 mouse_genomes_project 2 61691836 61693424 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099193.1 MGP_C3HHeJ_G0037387.1 mouse_genomes_project 2 53863921 53864062 + Gm25489 snRNA snRNA MGP_C3HHeJ_T0058746.1 MGP_C3HHeJ_G0026550.1 mouse_genomes_project 2 167676620 167701783 + MGP_C3HHeJ_P0058746 Ywhab protein_coding protein_coding MGP_C3HHeJ_T0058747.1 MGP_C3HHeJ_G0026550.1 mouse_genomes_project 2 167677169 167698487 + MGP_C3HHeJ_P0058747 Ywhab protein_coding protein_coding MGP_C3HHeJ_T0052139.1 MGP_C3HHeJ_G0025063.1 mouse_genomes_project 2 3218228 3243286 - MGP_C3HHeJ_P0052139 Echdc3 protein_coding protein_coding MGP_C3HHeJ_T0052140.1 MGP_C3HHeJ_G0025063.1 mouse_genomes_project 2 3219272 3225972 - Echdc3 protein_coding processed_transcript MGP_C3HHeJ_T0052141.1 MGP_C3HHeJ_G0025063.1 mouse_genomes_project 2 3236257 3243232 - Echdc3 protein_coding retained_intron MGP_C3HHeJ_T0100433.1 MGP_C3HHeJ_G0038627.1 mouse_genomes_project 2 20413331 20413451 + Gm25544 snoRNA snoRNA MGP_C3HHeJ_T0053194.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25209334 25239407 - MGP_C3HHeJ_P0053194 Brd3 protein_coding protein_coding MGP_C3HHeJ_T0053195.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25209334 25239695 - MGP_C3HHeJ_P0053195 Brd3 protein_coding protein_coding MGP_C3HHeJ_T0053196.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25209355 25239682 - MGP_C3HHeJ_P0053196 Brd3 protein_coding protein_coding MGP_C3HHeJ_T0053197.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25211598 25228125 - MGP_C3HHeJ_P0053197 Brd3 protein_coding protein_coding MGP_C3HHeJ_T0053198.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25213280 25275256 - MGP_C3HHeJ_P0053198 Brd3 protein_coding protein_coding MGP_C3HHeJ_T0053199.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25213280 25239663 - MGP_C3HHeJ_P0053199 Brd3 protein_coding protein_coding MGP_C3HHeJ_T0053200.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25217004 25239662 - Brd3 protein_coding processed_transcript MGP_C3HHeJ_T0053201.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25227539 25239616 - MGP_C3HHeJ_P0053201 Brd3 protein_coding protein_coding MGP_C3HHeJ_T0053202.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25227900 25228591 - Brd3 protein_coding processed_transcript MGP_C3HHeJ_T0053203.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25228007 25239190 - Brd3 protein_coding processed_transcript MGP_C3HHeJ_T0013515.1 MGP_C3HHeJ_G0011619.1 mouse_genomes_project 2 91697007 91697175 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055249.1 MGP_C3HHeJ_G0025617.1 mouse_genomes_project 2 80233120 80318084 - MGP_C3HHeJ_P0055249 Nckap1 protein_coding protein_coding MGP_C3HHeJ_T0055250.1 MGP_C3HHeJ_G0025617.1 mouse_genomes_project 2 80233126 80318200 - MGP_C3HHeJ_P0055250 Nckap1 protein_coding protein_coding MGP_C3HHeJ_T0055251.1 MGP_C3HHeJ_G0025617.1 mouse_genomes_project 2 80240819 80261769 - Nckap1 protein_coding processed_transcript MGP_C3HHeJ_T0055252.1 MGP_C3HHeJ_G0025617.1 mouse_genomes_project 2 80281509 80292008 - Nckap1 protein_coding processed_transcript MGP_C3HHeJ_T0055253.1 MGP_C3HHeJ_G0025617.1 mouse_genomes_project 2 80285331 80291728 - Nckap1 protein_coding processed_transcript MGP_C3HHeJ_T0057820.1 MGP_C3HHeJ_G0026338.1 mouse_genomes_project 2 151709510 151714407 - MGP_C3HHeJ_P0057820 9230104L09Rik protein_coding protein_coding MGP_C3HHeJ_T0057821.1 MGP_C3HHeJ_G0026338.1 mouse_genomes_project 2 151709703 151728073 - 9230104L09Rik protein_coding processed_transcript MGP_C3HHeJ_T0058214.1 MGP_C3HHeJ_G0026452.1 mouse_genomes_project 2 158661713 158715271 - MGP_C3HHeJ_P0058214 Ncoa6 protein_coding protein_coding MGP_C3HHeJ_T0058215.1 MGP_C3HHeJ_G0026452.1 mouse_genomes_project 2 158661722 158750895 - MGP_C3HHeJ_P0058215 Ncoa6 protein_coding protein_coding MGP_C3HHeJ_T0058216.1 MGP_C3HHeJ_G0026452.1 mouse_genomes_project 2 158661726 158667742 - Ncoa6 protein_coding retained_intron MGP_C3HHeJ_T0058217.1 MGP_C3HHeJ_G0026452.1 mouse_genomes_project 2 158661726 158676526 - Ncoa6 protein_coding retained_intron MGP_C3HHeJ_T0058218.1 MGP_C3HHeJ_G0026452.1 mouse_genomes_project 2 158679799 158750983 - MGP_C3HHeJ_P0058218 Ncoa6 protein_coding protein_coding MGP_C3HHeJ_T0058219.1 MGP_C3HHeJ_G0026452.1 mouse_genomes_project 2 158691024 158694541 - Ncoa6 protein_coding processed_transcript MGP_C3HHeJ_T0058220.1 MGP_C3HHeJ_G0026452.1 mouse_genomes_project 2 158695913 158715273 - MGP_C3HHeJ_P0058220 Ncoa6 protein_coding protein_coding MGP_C3HHeJ_T0058221.1 MGP_C3HHeJ_G0026452.1 mouse_genomes_project 2 158712501 158750913 - Ncoa6 protein_coding processed_transcript MGP_C3HHeJ_T0056265.1 MGP_C3HHeJ_G0025959.1 mouse_genomes_project 2 110229510 110289656 + MGP_C3HHeJ_P0056265 Kif18a protein_coding protein_coding MGP_C3HHeJ_T0056266.1 MGP_C3HHeJ_G0025959.1 mouse_genomes_project 2 110229598 110245148 + Kif18a protein_coding retained_intron MGP_C3HHeJ_T0056267.1 MGP_C3HHeJ_G0025959.1 mouse_genomes_project 2 110229612 110256497 + Kif18a protein_coding retained_intron MGP_C3HHeJ_T0056268.1 MGP_C3HHeJ_G0025959.1 mouse_genomes_project 2 110229624 110259829 + Kif18a protein_coding retained_intron MGP_C3HHeJ_T0056269.1 MGP_C3HHeJ_G0025959.1 mouse_genomes_project 2 110229641 110244879 + Kif18a protein_coding retained_intron MGP_C3HHeJ_T0056270.1 MGP_C3HHeJ_G0025959.1 mouse_genomes_project 2 110240860 110245148 + Kif18a protein_coding retained_intron MGP_C3HHeJ_T0056571.1 MGP_C3HHeJ_G0026062.1 mouse_genomes_project 2 120876403 120879553 + MGP_C3HHeJ_P0056571 Chac1 protein_coding protein_coding MGP_C3HHeJ_T0007038.1 MGP_C3HHeJ_G0005770.1 mouse_genomes_project 2 844470 860193 + lincRNA lincRNA MGP_C3HHeJ_T0058966.1 MGP_C3HHeJ_G0026616.1 mouse_genomes_project 2 169389297 169583458 + MGP_C3HHeJ_P0058966 Eya2 protein_coding protein_coding MGP_C3HHeJ_T0058967.1 MGP_C3HHeJ_G0026616.1 mouse_genomes_project 2 169461937 169583466 + MGP_C3HHeJ_P0058967 Eya2 protein_coding protein_coding MGP_C3HHeJ_T0058968.1 MGP_C3HHeJ_G0026616.1 mouse_genomes_project 2 169461957 169521435 + Eya2 protein_coding processed_transcript MGP_C3HHeJ_T0058969.1 MGP_C3HHeJ_G0026616.1 mouse_genomes_project 2 169519165 169576015 + Eya2 protein_coding processed_transcript MGP_C3HHeJ_T0058970.1 MGP_C3HHeJ_G0026616.1 mouse_genomes_project 2 169571562 169576873 + Eya2 protein_coding processed_transcript MGP_C3HHeJ_T0058971.1 MGP_C3HHeJ_G0026616.1 mouse_genomes_project 2 169579106 169583005 + Eya2 protein_coding processed_transcript MGP_C3HHeJ_T0007131.1 MGP_C3HHeJ_G0005843.1 mouse_genomes_project 2 63476460 63487525 - Gm13575 lincRNA lincRNA MGP_C3HHeJ_T0054187.1 MGP_C3HHeJ_G0025415.1 mouse_genomes_project 2 35210203 35211136 - MGP_C3HHeJ_P0054187 Olfr355 protein_coding protein_coding MGP_C3HHeJ_T0007135.1 MGP_C3HHeJ_G0005847.1 mouse_genomes_project 2 66922588 66932865 - Gm26743 lincRNA lincRNA MGP_C3HHeJ_T0054412.1 MGP_C3HHeJ_G0025456.1 mouse_genomes_project 2 48453990 48625851 + MGP_C3HHeJ_P0054412 Lypd6b protein_coding protein_coding MGP_C3HHeJ_T0054413.1 MGP_C3HHeJ_G0025456.1 mouse_genomes_project 2 48454033 48608025 + Lypd6b protein_coding processed_transcript MGP_C3HHeJ_T0054414.1 MGP_C3HHeJ_G0025456.1 mouse_genomes_project 2 48513879 48619576 + Lypd6b protein_coding processed_transcript MGP_C3HHeJ_T0054415.1 MGP_C3HHeJ_G0025456.1 mouse_genomes_project 2 48615054 48625851 + MGP_C3HHeJ_P0054415 Lypd6b protein_coding unknown_likely_coding MGP_C3HHeJ_T0007224.1 MGP_C3HHeJ_G0005917.1 mouse_genomes_project 2 118366607 118370463 - Gm29340 lincRNA lincRNA MGP_C3HHeJ_T0052590.1 MGP_C3HHeJ_G0025140.1 mouse_genomes_project 2 21888267 21892162 + MGP_C3HHeJ_P0052590 Il1f5 protein_coding protein_coding MGP_C3HHeJ_T0052591.1 MGP_C3HHeJ_G0025140.1 mouse_genomes_project 2 21888524 21890332 + Il1f5 protein_coding retained_intron MGP_C3HHeJ_T0052592.1 MGP_C3HHeJ_G0025140.1 mouse_genomes_project 2 21888535 21892883 + Il1f5 protein_coding processed_transcript MGP_C3HHeJ_T0052593.1 MGP_C3HHeJ_G0025140.1 mouse_genomes_project 2 21888752 21892626 + MGP_C3HHeJ_P0052593 Il1f5 protein_coding protein_coding MGP_C3HHeJ_T0058728.1 MGP_C3HHeJ_G0026544.1 mouse_genomes_project 2 167314601 167337487 - MGP_C3HHeJ_P0058728 Serinc3 protein_coding protein_coding MGP_C3HHeJ_T0058729.1 MGP_C3HHeJ_G0026544.1 mouse_genomes_project 2 167329185 167337481 - Serinc3 protein_coding processed_transcript MGP_C3HHeJ_T0000997.1 MGP_C3HHeJ_G0000934.1 mouse_genomes_project 2 8576194 8577083 + TEC TEC MGP_C3HHeJ_T0013588.1 MGP_C3HHeJ_G0011692.1 mouse_genomes_project 2 121040730 121042851 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001039.1 MGP_C3HHeJ_G0000976.1 mouse_genomes_project 2 36331905 36337238 + TEC TEC MGP_C3HHeJ_T0055549.1 MGP_C3HHeJ_G0025785.1 mouse_genomes_project 2 88746849 88747952 + MGP_C3HHeJ_P0055549 Olfr1193 protein_coding protein_coding MGP_C3HHeJ_T0003947.1 MGP_C3HHeJ_G0003511.1 mouse_genomes_project 2 74219127 74219942 - Gm28793 antisense antisense MGP_C3HHeJ_T0013488.1 MGP_C3HHeJ_G0011592.1 mouse_genomes_project 2 83224659 83225361 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052586.1 MGP_C3HHeJ_G0025137.1 mouse_genomes_project 2 21791950 21802556 + MGP_C3HHeJ_P0052586 Il1f9 protein_coding protein_coding MGP_C3HHeJ_T0056902.1 MGP_C3HHeJ_G0026116.1 mouse_genomes_project 2 123105735 123130402 - MGP_C3HHeJ_P0056902 protein_coding protein_coding MGP_C3HHeJ_T0007337.1 MGP_C3HHeJ_G0006012.1 mouse_genomes_project 2 174776342 174787040 - Gm14264 lincRNA lincRNA MGP_C3HHeJ_T0004076.1 MGP_C3HHeJ_G0003604.1 mouse_genomes_project 2 167099687 167100254 + 2900093K20Rik antisense antisense MGP_C3HHeJ_T0053511.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28315437 28336780 + MGP_C3HHeJ_P0053511 Fam73b protein_coding protein_coding MGP_C3HHeJ_T0053512.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28315449 28319914 + Fam73b protein_coding processed_transcript MGP_C3HHeJ_T0053513.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28315458 28330287 + MGP_C3HHeJ_P0053513 Fam73b protein_coding protein_coding MGP_C3HHeJ_T0053514.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28315470 28320521 + Fam73b protein_coding retained_intron MGP_C3HHeJ_T0053515.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28315497 28321622 + MGP_C3HHeJ_P0053515 Fam73b protein_coding protein_coding MGP_C3HHeJ_T0053516.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28315500 28336778 + MGP_C3HHeJ_P0053516 Fam73b protein_coding protein_coding MGP_C3HHeJ_T0053517.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28318899 28320522 + Fam73b protein_coding retained_intron MGP_C3HHeJ_T0053518.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28319631 28322419 + MGP_C3HHeJ_P0053518 Fam73b protein_coding protein_coding MGP_C3HHeJ_T0053519.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28322498 28327852 + Fam73b protein_coding retained_intron MGP_C3HHeJ_T0053520.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28329427 28333266 + Fam73b protein_coding retained_intron MGP_C3HHeJ_T0053521.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28332971 28335359 + MGP_C3HHeJ_P0053521 Fam73b protein_coding protein_coding MGP_C3HHeJ_T0053522.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28333202 28335465 + MGP_C3HHeJ_P0053522 Fam73b protein_coding protein_coding MGP_C3HHeJ_T0056331.1 MGP_C3HHeJ_G0025991.1 mouse_genomes_project 2 113024269 113025470 - MGP_C3HHeJ_P0056331 Olfr1303 protein_coding protein_coding MGP_C3HHeJ_T0053660.1 MGP_C3HHeJ_G0025320.1 mouse_genomes_project 2 29484275 29540190 + MGP_C3HHeJ_P0053660 Ass1 protein_coding protein_coding MGP_C3HHeJ_T0053661.1 MGP_C3HHeJ_G0025320.1 mouse_genomes_project 2 29484302 29540191 + MGP_C3HHeJ_P0053661 Ass1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0053662.1 MGP_C3HHeJ_G0025320.1 mouse_genomes_project 2 29536484 29540049 + Ass1 protein_coding retained_intron MGP_C3HHeJ_T0055526.1 MGP_C3HHeJ_G0025764.1 mouse_genomes_project 2 88072441 88073398 - MGP_C3HHeJ_P0055526 Olfr74 protein_coding protein_coding MGP_C3HHeJ_T0055544.1 MGP_C3HHeJ_G0025781.1 mouse_genomes_project 2 88633086 88633998 + MGP_C3HHeJ_P0055544 Olfr1186 protein_coding protein_coding MGP_C3HHeJ_T0056194.1 MGP_C3HHeJ_G0025945.1 mouse_genomes_project 2 105647716 105737040 + MGP_C3HHeJ_P0056194 Ccdc73 protein_coding protein_coding MGP_C3HHeJ_T0056195.1 MGP_C3HHeJ_G0025945.1 mouse_genomes_project 2 105667623 105791529 + MGP_C3HHeJ_P0056195 Ccdc73 protein_coding protein_coding MGP_C3HHeJ_T0056196.1 MGP_C3HHeJ_G0025945.1 mouse_genomes_project 2 105689644 105779428 + MGP_C3HHeJ_P0056196 Ccdc73 protein_coding protein_coding MGP_C3HHeJ_T0056197.1 MGP_C3HHeJ_G0025945.1 mouse_genomes_project 2 105781586 105809736 + MGP_C3HHeJ_P0056197 Ccdc73 protein_coding protein_coding MGP_C3HHeJ_T0056202.1 MGP_C3HHeJ_G0025945.1 mouse_genomes_project 2 105808998 105809789 + Ccdc73 protein_coding processed_transcript MGP_C3HHeJ_T0017529.1 MGP_C3HHeJ_G0015166.1 mouse_genomes_project 2 24197288 24198496 + Gm13568 processed_transcript processed_transcript MGP_C3HHeJ_T0055633.1 MGP_C3HHeJ_G0025849.1 mouse_genomes_project 2 90540047 90540974 - MGP_C3HHeJ_P0055633 Olfr1272 protein_coding protein_coding MGP_C3HHeJ_T0052662.1 MGP_C3HHeJ_G0025150.1 mouse_genomes_project 2 22611549 22612531 - MGP_C3HHeJ_P0052662 Mrpl41 protein_coding protein_coding MGP_C3HHeJ_T0052663.1 MGP_C3HHeJ_G0025150.1 mouse_genomes_project 2 22611927 22612422 - MGP_C3HHeJ_P0052663 Mrpl41 protein_coding protein_coding MGP_C3HHeJ_T0055789.1 MGP_C3HHeJ_G0025869.1 mouse_genomes_project 2 91612112 91624414 + MGP_C3HHeJ_P0055789 Arfgap2 protein_coding protein_coding MGP_C3HHeJ_T0055790.1 MGP_C3HHeJ_G0025869.1 mouse_genomes_project 2 91612143 91613365 + Arfgap2 protein_coding retained_intron MGP_C3HHeJ_T0055791.1 MGP_C3HHeJ_G0025869.1 mouse_genomes_project 2 91612152 91622605 + MGP_C3HHeJ_P0055791 Arfgap2 protein_coding protein_coding MGP_C3HHeJ_T0055792.1 MGP_C3HHeJ_G0025869.1 mouse_genomes_project 2 91612153 91615572 + Arfgap2 protein_coding retained_intron MGP_C3HHeJ_T0055793.1 MGP_C3HHeJ_G0025869.1 mouse_genomes_project 2 91612521 91614209 + Arfgap2 protein_coding processed_transcript MGP_C3HHeJ_T0055794.1 MGP_C3HHeJ_G0025869.1 mouse_genomes_project 2 91616161 91620427 + Arfgap2 protein_coding retained_intron MGP_C3HHeJ_T0055795.1 MGP_C3HHeJ_G0025869.1 mouse_genomes_project 2 91616911 91620945 + Arfgap2 protein_coding retained_intron MGP_C3HHeJ_T0098392.1 MGP_C3HHeJ_G0036598.1 mouse_genomes_project 2 1202374 1204643 + Gm38348 sense_intronic sense_intronic MGP_C3HHeJ_T0011392.1 MGP_C3HHeJ_G0009525.1 mouse_genomes_project 2 10561413 10561600 + Gm27540 misc_RNA misc_RNA MGP_C3HHeJ_T0056203.1 MGP_C3HHeJ_G0025947.1 mouse_genomes_project 2 105916461 105967843 + MGP_C3HHeJ_P0056203 Wt1 protein_coding protein_coding MGP_C3HHeJ_T0056204.1 MGP_C3HHeJ_G0025947.1 mouse_genomes_project 2 105916928 105966574 + MGP_C3HHeJ_P0056204 Wt1 protein_coding protein_coding MGP_C3HHeJ_T0056205.1 MGP_C3HHeJ_G0025947.1 mouse_genomes_project 2 105916933 105966497 + MGP_C3HHeJ_P0056205 Wt1 protein_coding protein_coding MGP_C3HHeJ_T0056206.1 MGP_C3HHeJ_G0025947.1 mouse_genomes_project 2 105917142 105966913 + MGP_C3HHeJ_P0056206 Wt1 protein_coding protein_coding MGP_C3HHeJ_T0056207.1 MGP_C3HHeJ_G0025947.1 mouse_genomes_project 2 105920715 105923850 + Wt1 protein_coding retained_intron MGP_C3HHeJ_T0056208.1 MGP_C3HHeJ_G0025947.1 mouse_genomes_project 2 105920798 105967847 + MGP_C3HHeJ_P0056208 Wt1 protein_coding protein_coding MGP_C3HHeJ_T0056209.1 MGP_C3HHeJ_G0025947.1 mouse_genomes_project 2 105920798 105967843 + MGP_C3HHeJ_P0056209 Wt1 protein_coding protein_coding MGP_C3HHeJ_T0056210.1 MGP_C3HHeJ_G0025947.1 mouse_genomes_project 2 105956972 105964193 + Wt1 protein_coding retained_intron MGP_C3HHeJ_T0100489.1 MGP_C3HHeJ_G0038683.1 mouse_genomes_project 2 145448310 145448426 + Gm22310 snoRNA snoRNA MGP_C3HHeJ_T0055338.1 MGP_C3HHeJ_G0025636.1 mouse_genomes_project 2 84430376 84459857 - MGP_C3HHeJ_P0055338 Zdhhc5 protein_coding protein_coding MGP_C3HHeJ_T0055339.1 MGP_C3HHeJ_G0025636.1 mouse_genomes_project 2 84455492 84459363 - Zdhhc5 protein_coding processed_transcript MGP_C3HHeJ_T0055340.1 MGP_C3HHeJ_G0025636.1 mouse_genomes_project 2 84455641 84459713 - Zdhhc5 protein_coding processed_transcript MGP_C3HHeJ_T0055985.1 MGP_C3HHeJ_G0025901.1 mouse_genomes_project 2 94341912 94355708 - MGP_C3HHeJ_P0055985 Accsl protein_coding protein_coding MGP_C3HHeJ_T0055986.1 MGP_C3HHeJ_G0025901.1 mouse_genomes_project 2 94341913 94343573 - MGP_C3HHeJ_P0055986 Accsl protein_coding protein_coding MGP_C3HHeJ_T0055987.1 MGP_C3HHeJ_G0025901.1 mouse_genomes_project 2 94341918 94343285 - Accsl protein_coding processed_transcript MGP_C3HHeJ_T0055988.1 MGP_C3HHeJ_G0025901.1 mouse_genomes_project 2 94347626 94351377 - Accsl protein_coding processed_transcript MGP_C3HHeJ_T0055989.1 MGP_C3HHeJ_G0025901.1 mouse_genomes_project 2 94348340 94355708 - Accsl protein_coding processed_transcript MGP_C3HHeJ_T0055990.1 MGP_C3HHeJ_G0025901.1 mouse_genomes_project 2 94352435 94355623 - MGP_C3HHeJ_P0055990 Accsl protein_coding protein_coding MGP_C3HHeJ_T0055991.1 MGP_C3HHeJ_G0025901.1 mouse_genomes_project 2 94352435 94355633 - MGP_C3HHeJ_P0055991 Accsl protein_coding protein_coding MGP_C3HHeJ_T0055992.1 MGP_C3HHeJ_G0025901.1 mouse_genomes_project 2 94352587 94355244 - Accsl protein_coding processed_transcript MGP_C3HHeJ_T0007067.1 MGP_C3HHeJ_G0005793.1 mouse_genomes_project 2 18663121 18686606 + Gm13376 lincRNA lincRNA MGP_C3HHeJ_T0052473.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 17441080 18298472 + MGP_C3HHeJ_P0052473 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052474.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 17820606 18365413 + MGP_C3HHeJ_P0052474 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052475.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 17820606 18211540 + MGP_C3HHeJ_P0052475 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052476.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 17874534 18211406 + MGP_C3HHeJ_P0052476 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052477.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18049042 18365402 + MGP_C3HHeJ_P0052477 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052478.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18049042 18365402 + MGP_C3HHeJ_P0052478 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052479.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18059406 18364763 + MGP_C3HHeJ_P0052479 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052480.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18059426 18265635 + Etl4 protein_coding retained_intron MGP_C3HHeJ_T0052481.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18059443 18365414 + MGP_C3HHeJ_P0052481 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052482.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18059473 18362917 + MGP_C3HHeJ_P0052482 Etl4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0052483.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18089227 18263303 + Etl4 protein_coding processed_transcript MGP_C3HHeJ_T0052484.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18089269 18211804 + Etl4 protein_coding processed_transcript MGP_C3HHeJ_T0052485.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18100968 18263393 + Etl4 protein_coding processed_transcript MGP_C3HHeJ_T0052486.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18267067 18297642 + Etl4 protein_coding processed_transcript MGP_C3HHeJ_T0052487.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18276112 18358308 + Etl4 protein_coding retained_intron MGP_C3HHeJ_T0052488.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18276112 18340099 + Etl4 protein_coding retained_intron MGP_C3HHeJ_T0052489.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18276359 18363068 + MGP_C3HHeJ_P0052489 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052490.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18290970 18365591 + MGP_C3HHeJ_P0052490 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052491.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18290970 18365232 + MGP_C3HHeJ_P0052491 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052492.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18353567 18363759 + Etl4 protein_coding processed_transcript MGP_C3HHeJ_T0052493.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18362331 18365402 + Etl4 protein_coding retained_intron MGP_C3HHeJ_T0007049.1 MGP_C3HHeJ_G0005779.1 mouse_genomes_project 2 4800607 4862740 - Gm13211 lincRNA lincRNA MGP_C3HHeJ_T0013630.1 MGP_C3HHeJ_G0011734.1 mouse_genomes_project 2 141894928 141895437 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004094.1 MGP_C3HHeJ_G0003614.1 mouse_genomes_project 2 169237027 169245245 + Gm14437 antisense antisense MGP_C3HHeJ_T0055557.1 MGP_C3HHeJ_G0025793.1 mouse_genomes_project 2 88948033 88948822 + MGP_C3HHeJ_P0055557 protein_coding protein_coding MGP_C3HHeJ_T0055440.1 MGP_C3HHeJ_G0025690.1 mouse_genomes_project 2 86081433 86082396 - MGP_C3HHeJ_P0055440 Olfr1048 protein_coding protein_coding MGP_C3HHeJ_T0007321.1 MGP_C3HHeJ_G0005998.1 mouse_genomes_project 2 172126900 172132436 - Gm14235 lincRNA lincRNA MGP_C3HHeJ_T0053842.1 MGP_C3HHeJ_G0025347.1 mouse_genomes_project 2 30689212 30701816 + MGP_C3HHeJ_P0053842 St6galnac4 protein_coding protein_coding MGP_C3HHeJ_T0053843.1 MGP_C3HHeJ_G0025347.1 mouse_genomes_project 2 30689256 30696393 + St6galnac4 protein_coding retained_intron MGP_C3HHeJ_T0053844.1 MGP_C3HHeJ_G0025347.1 mouse_genomes_project 2 30689698 30699819 + St6galnac4 protein_coding retained_intron MGP_C3HHeJ_T0053845.1 MGP_C3HHeJ_G0025347.1 mouse_genomes_project 2 30689742 30701193 + MGP_C3HHeJ_P0053845 St6galnac4 protein_coding protein_coding MGP_C3HHeJ_T0053846.1 MGP_C3HHeJ_G0025347.1 mouse_genomes_project 2 30696393 30699307 + MGP_C3HHeJ_P0053846 St6galnac4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010263.1 MGP_C3HHeJ_G0008396.1 mouse_genomes_project 2 7697502 7697599 + Mir467c miRNA miRNA MGP_C3HHeJ_T0007252.1 MGP_C3HHeJ_G0005940.1 mouse_genomes_project 2 135776201 135778868 + Gm14100 lincRNA lincRNA MGP_C3HHeJ_T0013308.1 MGP_C3HHeJ_G0011412.1 mouse_genomes_project 2 17174724 17174829 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099182.1 MGP_C3HHeJ_G0037376.1 mouse_genomes_project 2 25308500 25308626 - Gm25541 snRNA snRNA MGP_C3HHeJ_T0013283.1 MGP_C3HHeJ_G0011387.1 mouse_genomes_project 2 8864740 8866004 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052437.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16172560 16176963 + MGP_C3HHeJ_P0052437 Commd3 protein_coding protein_coding MGP_C3HHeJ_T0052438.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16172599 16176964 + MGP_C3HHeJ_P0052438 Commd3 protein_coding protein_coding MGP_C3HHeJ_T0052439.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16172609 16175425 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0052440.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16172611 16175368 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0052441.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16172612 16175245 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0052442.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16172699 16175133 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0052443.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16174390 16175130 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0052444.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16174693 16176661 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0052445.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16174817 16176714 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0052446.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16175079 16176656 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0052447.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16175156 16175739 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0052448.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16175381 16176234 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0007042.1 MGP_C3HHeJ_G0005774.1 mouse_genomes_project 2 3162159 3169609 + Gm10857 lincRNA lincRNA MGP_C3HHeJ_T0007043.1 MGP_C3HHeJ_G0005774.1 mouse_genomes_project 2 3162173 3169554 + Gm10857 lincRNA lincRNA MGP_C3HHeJ_T0059059.1 MGP_C3HHeJ_G0026629.1 mouse_genomes_project 2 171215705 171267351 - MGP_C3HHeJ_P0059059 B4galt5 protein_coding protein_coding MGP_C3HHeJ_T0059060.1 MGP_C3HHeJ_G0026629.1 mouse_genomes_project 2 171218451 171222915 - MGP_C3HHeJ_P0059060 B4galt5 protein_coding protein_coding MGP_C3HHeJ_T0059061.1 MGP_C3HHeJ_G0026629.1 mouse_genomes_project 2 171224826 171231072 - B4galt5 protein_coding processed_transcript MGP_C3HHeJ_T0059062.1 MGP_C3HHeJ_G0026629.1 mouse_genomes_project 2 171224826 171231117 - B4galt5 protein_coding processed_transcript MGP_C3HHeJ_T0058335.1 MGP_C3HHeJ_G0026472.1 mouse_genomes_project 2 159383926 159388257 + Spag4 protein_coding retained_intron MGP_C3HHeJ_T0058336.1 MGP_C3HHeJ_G0026472.1 mouse_genomes_project 2 159383949 159389381 + Spag4 protein_coding retained_intron MGP_C3HHeJ_T0058337.1 MGP_C3HHeJ_G0026472.1 mouse_genomes_project 2 159383978 159387980 + Spag4 protein_coding retained_intron MGP_C3HHeJ_T0058338.1 MGP_C3HHeJ_G0026472.1 mouse_genomes_project 2 159383995 159388257 + MGP_C3HHeJ_P0058338 Spag4 protein_coding protein_coding MGP_C3HHeJ_T0058339.1 MGP_C3HHeJ_G0026472.1 mouse_genomes_project 2 159384188 159386081 + MGP_C3HHeJ_P0058339 Spag4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058340.1 MGP_C3HHeJ_G0026472.1 mouse_genomes_project 2 159384304 159386288 + MGP_C3HHeJ_P0058340 Spag4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058341.1 MGP_C3HHeJ_G0026472.1 mouse_genomes_project 2 159384493 159386796 + MGP_C3HHeJ_P0058341 Spag4 protein_coding protein_coding MGP_C3HHeJ_T0058342.1 MGP_C3HHeJ_G0026472.1 mouse_genomes_project 2 159385486 159388134 + Spag4 protein_coding processed_transcript MGP_C3HHeJ_T0010405.1 MGP_C3HHeJ_G0008538.1 mouse_genomes_project 2 178595226 178595308 - Mir298 miRNA miRNA MGP_C3HHeJ_T0059380.1 MGP_C3HHeJ_G0026714.1 mouse_genomes_project 2 185170882 185196878 + MGP_C3HHeJ_P0059380 Col9a3 protein_coding protein_coding MGP_C3HHeJ_T0059381.1 MGP_C3HHeJ_G0026714.1 mouse_genomes_project 2 185171314 185196874 + MGP_C3HHeJ_P0059381 Col9a3 protein_coding protein_coding MGP_C3HHeJ_T0059382.1 MGP_C3HHeJ_G0026714.1 mouse_genomes_project 2 185171898 185180485 + Col9a3 protein_coding retained_intron MGP_C3HHeJ_T0059383.1 MGP_C3HHeJ_G0026714.1 mouse_genomes_project 2 185177892 185188115 + Col9a3 protein_coding retained_intron MGP_C3HHeJ_T0059384.1 MGP_C3HHeJ_G0026714.1 mouse_genomes_project 2 185188802 185195987 + Col9a3 protein_coding retained_intron MGP_C3HHeJ_T0059385.1 MGP_C3HHeJ_G0026714.1 mouse_genomes_project 2 185190955 185196291 + Col9a3 protein_coding retained_intron MGP_C3HHeJ_T0056548.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120728001 120729923 + Zfyve19 protein_coding processed_transcript MGP_C3HHeJ_T0056549.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120728396 120729986 + Zfyve19 protein_coding processed_transcript MGP_C3HHeJ_T0056550.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120728416 120731149 + Zfyve19 protein_coding processed_transcript MGP_C3HHeJ_T0056551.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120728425 120730527 + Zfyve19 protein_coding retained_intron MGP_C3HHeJ_T0056552.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120728431 120736765 + MGP_C3HHeJ_P0056552 Zfyve19 protein_coding protein_coding MGP_C3HHeJ_T0056553.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120730221 120734600 + Zfyve19 protein_coding retained_intron MGP_C3HHeJ_T0056554.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120730845 120731103 + Zfyve19 protein_coding processed_transcript MGP_C3HHeJ_T0056555.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120731024 120734622 + Zfyve19 protein_coding retained_intron MGP_C3HHeJ_T0056556.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120734166 120736108 + Zfyve19 protein_coding retained_intron MGP_C3HHeJ_T0056557.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120735975 120736760 + Zfyve19 protein_coding retained_intron MGP_C3HHeJ_T0013277.1 MGP_C3HHeJ_G0011381.1 mouse_genomes_project 2 6745793 6746301 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055585.1 MGP_C3HHeJ_G0025817.1 mouse_genomes_project 2 89452910 89453852 - MGP_C3HHeJ_P0055585 Olfr1231 protein_coding protein_coding MGP_C3HHeJ_T0001007.1 MGP_C3HHeJ_G0000944.1 mouse_genomes_project 2 10331076 10332689 + TEC TEC MGP_C3HHeJ_T0053497.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28293955 28309131 - MGP_C3HHeJ_P0053497 Sh3glb2 protein_coding protein_coding MGP_C3HHeJ_T0053498.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28293955 28309207 - MGP_C3HHeJ_P0053498 Sh3glb2 protein_coding protein_coding MGP_C3HHeJ_T0053499.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28293957 28309180 - MGP_C3HHeJ_P0053499 Sh3glb2 protein_coding protein_coding MGP_C3HHeJ_T0053500.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28293957 28309156 - MGP_C3HHeJ_P0053500 Sh3glb2 protein_coding protein_coding MGP_C3HHeJ_T0053501.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28293957 28309223 - MGP_C3HHeJ_P0053501 Sh3glb2 protein_coding protein_coding MGP_C3HHeJ_T0053502.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28294281 28309196 - Sh3glb2 protein_coding retained_intron MGP_C3HHeJ_T0053503.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28294287 28295248 - Sh3glb2 protein_coding processed_transcript MGP_C3HHeJ_T0053504.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28294966 28309228 - Sh3glb2 protein_coding processed_transcript MGP_C3HHeJ_T0053505.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28295032 28296803 - Sh3glb2 protein_coding retained_intron MGP_C3HHeJ_T0053506.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28295254 28296734 - Sh3glb2 protein_coding retained_intron MGP_C3HHeJ_T0053507.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28297214 28305255 - Sh3glb2 protein_coding retained_intron MGP_C3HHeJ_T0053508.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28297236 28304770 - Sh3glb2 protein_coding retained_intron MGP_C3HHeJ_T0053509.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28298629 28309136 - Sh3glb2 protein_coding processed_transcript MGP_C3HHeJ_T0053510.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28298886 28309151 - Sh3glb2 protein_coding retained_intron MGP_C3HHeJ_T0054104.1 MGP_C3HHeJ_G0025385.1 mouse_genomes_project 2 33485899 33537381 + MGP_C3HHeJ_P0054104 Gsn protein_coding protein_coding MGP_C3HHeJ_T0054105.1 MGP_C3HHeJ_G0025385.1 mouse_genomes_project 2 33485903 33532742 + MGP_C3HHeJ_P0054105 Gsn protein_coding protein_coding MGP_C3HHeJ_T0054106.1 MGP_C3HHeJ_G0025385.1 mouse_genomes_project 2 33485915 33523060 + MGP_C3HHeJ_P0054106 Gsn protein_coding protein_coding MGP_C3HHeJ_T0054107.1 MGP_C3HHeJ_G0025385.1 mouse_genomes_project 2 33485928 33523058 + MGP_C3HHeJ_P0054107 Gsn protein_coding protein_coding MGP_C3HHeJ_T0054108.1 MGP_C3HHeJ_G0025385.1 mouse_genomes_project 2 33485968 33519938 + MGP_C3HHeJ_P0054108 Gsn protein_coding protein_coding MGP_C3HHeJ_T0054109.1 MGP_C3HHeJ_G0025385.1 mouse_genomes_project 2 33511870 33537383 + MGP_C3HHeJ_P0054109 Gsn protein_coding protein_coding MGP_C3HHeJ_T0054110.1 MGP_C3HHeJ_G0025385.1 mouse_genomes_project 2 33512003 33514516 + Gsn protein_coding retained_intron MGP_C3HHeJ_T0054492.1 MGP_C3HHeJ_G0025471.1 mouse_genomes_project 2 52008347 52038183 + Arl6ip6 protein_coding processed_transcript MGP_C3HHeJ_T0054493.1 MGP_C3HHeJ_G0025471.1 mouse_genomes_project 2 52008709 52039867 + MGP_C3HHeJ_P0054493 Arl6ip6 protein_coding protein_coding MGP_C3HHeJ_T0053447.1 MGP_C3HHeJ_G0025290.1 mouse_genomes_project 2 28067904 28088830 + MGP_C3HHeJ_P0053447 Tbc1d13 protein_coding protein_coding MGP_C3HHeJ_T0053448.1 MGP_C3HHeJ_G0025290.1 mouse_genomes_project 2 28067904 28071455 + MGP_C3HHeJ_P0053448 Tbc1d13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053449.1 MGP_C3HHeJ_G0025290.1 mouse_genomes_project 2 28067930 28069311 + Tbc1d13 protein_coding retained_intron MGP_C3HHeJ_T0053450.1 MGP_C3HHeJ_G0025290.1 mouse_genomes_project 2 28067949 28071338 + Tbc1d13 protein_coding processed_transcript MGP_C3HHeJ_T0053451.1 MGP_C3HHeJ_G0025290.1 mouse_genomes_project 2 28067964 28070835 + MGP_C3HHeJ_P0053451 Tbc1d13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053452.1 MGP_C3HHeJ_G0025290.1 mouse_genomes_project 2 28067979 28071672 + Tbc1d13 protein_coding processed_transcript MGP_C3HHeJ_T0053453.1 MGP_C3HHeJ_G0025290.1 mouse_genomes_project 2 28071188 28077250 + Tbc1d13 protein_coding processed_transcript MGP_C3HHeJ_T0053454.1 MGP_C3HHeJ_G0025290.1 mouse_genomes_project 2 28077004 28081804 + Tbc1d13 protein_coding retained_intron MGP_C3HHeJ_T0013486.1 MGP_C3HHeJ_G0011590.1 mouse_genomes_project 2 82448931 82449271 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058659.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164525089 164690963 - MGP_C3HHeJ_P0058659 Chd6 protein_coding protein_coding MGP_C3HHeJ_T0058660.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164537953 164539533 - Chd6 protein_coding processed_transcript MGP_C3HHeJ_T0058661.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164538075 164542808 - Chd6 protein_coding processed_transcript MGP_C3HHeJ_T0058662.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164558491 164563055 - Chd6 protein_coding retained_intron MGP_C3HHeJ_T0058663.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164561193 164690963 - MGP_C3HHeJ_P0058663 Chd6 protein_coding protein_coding MGP_C3HHeJ_T0058664.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164570903 164587978 - Chd6 protein_coding retained_intron MGP_C3HHeJ_T0058665.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164587518 164691016 - Chd6 protein_coding retained_intron MGP_C3HHeJ_T0058666.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164593576 164597734 - Chd6 protein_coding processed_transcript MGP_C3HHeJ_T0058667.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164605370 164609033 - Chd6 protein_coding processed_transcript MGP_C3HHeJ_T0058668.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164609323 164632117 - MGP_C3HHeJ_P0058668 Chd6 protein_coding protein_coding MGP_C3HHeJ_T0058669.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164614507 164690945 - Chd6 protein_coding retained_intron MGP_C3HHeJ_T0058961.1 MGP_C3HHeJ_G0026613.1 mouse_genomes_project 2 169284119 169287553 - MGP_C3HHeJ_P0058961 Trp53rka protein_coding protein_coding MGP_C3HHeJ_T0058962.1 MGP_C3HHeJ_G0026613.1 mouse_genomes_project 2 169285198 169287345 - Trp53rka protein_coding processed_transcript MGP_C3HHeJ_T0054927.1 MGP_C3HHeJ_G0025551.1 mouse_genomes_project 2 70505563 70533178 + MGP_C3HHeJ_P0054927 Cybrd1 protein_coding protein_coding MGP_C3HHeJ_T0057294.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132448228 132453573 + protein_coding retained_intron MGP_C3HHeJ_T0057295.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132448230 132452695 + protein_coding retained_intron MGP_C3HHeJ_T0057296.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132448239 132451320 + MGP_C3HHeJ_P0057296 protein_coding protein_coding MGP_C3HHeJ_T0057297.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132448258 132452213 + MGP_C3HHeJ_P0057297 protein_coding unknown_likely_coding MGP_C3HHeJ_T0057298.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132448276 132449881 + MGP_C3HHeJ_P0057298 protein_coding protein_coding MGP_C3HHeJ_T0057299.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132448615 132449479 + protein_coding retained_intron MGP_C3HHeJ_T0057300.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132449578 132450049 + protein_coding retained_intron MGP_C3HHeJ_T0057301.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132449941 132452695 + MGP_C3HHeJ_P0057301 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057302.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132450082 132451353 + protein_coding retained_intron MGP_C3HHeJ_T0057303.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132450257 132451738 + protein_coding retained_intron MGP_C3HHeJ_T0057304.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132450379 132451742 + MGP_C3HHeJ_P0057304 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057305.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132450447 132451065 + protein_coding retained_intron MGP_C3HHeJ_T0057306.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132451004 132452246 + protein_coding retained_intron MGP_C3HHeJ_T0057307.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132451097 132452013 + MGP_C3HHeJ_P0057307 protein_coding protein_coding MGP_C3HHeJ_T0017589.1 MGP_C3HHeJ_G0015207.1 mouse_genomes_project 2 93299370 93361844 - Gm13791 processed_transcript processed_transcript MGP_C3HHeJ_T0057114.1 MGP_C3HHeJ_G0026167.1 mouse_genomes_project 2 129129196 129147448 + Blvra protein_coding retained_intron MGP_C3HHeJ_T0057115.1 MGP_C3HHeJ_G0026167.1 mouse_genomes_project 2 129129198 129156653 + MGP_C3HHeJ_P0057115 Blvra protein_coding protein_coding MGP_C3HHeJ_T0057116.1 MGP_C3HHeJ_G0026167.1 mouse_genomes_project 2 129129210 129149907 + MGP_C3HHeJ_P0057116 Blvra protein_coding protein_coding MGP_C3HHeJ_T0057117.1 MGP_C3HHeJ_G0026167.1 mouse_genomes_project 2 129129224 129146997 + MGP_C3HHeJ_P0057117 Blvra protein_coding protein_coding MGP_C3HHeJ_T0057118.1 MGP_C3HHeJ_G0026167.1 mouse_genomes_project 2 129138625 129151680 + MGP_C3HHeJ_P0057118 Blvra protein_coding protein_coding MGP_C3HHeJ_T0017524.1 MGP_C3HHeJ_G0015164.1 mouse_genomes_project 2 24089583 24108891 + Gm13562 processed_transcript processed_transcript MGP_C3HHeJ_T0017525.1 MGP_C3HHeJ_G0015164.1 mouse_genomes_project 2 24102435 24106702 + Gm13562 processed_transcript processed_transcript MGP_C3HHeJ_T0013677.1 MGP_C3HHeJ_G0011781.1 mouse_genomes_project 2 157276035 157278234 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013703.1 MGP_C3HHeJ_G0011807.1 mouse_genomes_project 2 164895598 164896055 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013485.1 MGP_C3HHeJ_G0011589.1 mouse_genomes_project 2 82366861 82367452 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053152.1 MGP_C3HHeJ_G0025240.1 mouse_genomes_project 2 24761489 24768413 + MGP_C3HHeJ_P0053152 Cacfd1 protein_coding protein_coding MGP_C3HHeJ_T0053153.1 MGP_C3HHeJ_G0025240.1 mouse_genomes_project 2 24761489 24768988 + MGP_C3HHeJ_P0053153 Cacfd1 protein_coding protein_coding MGP_C3HHeJ_T0053154.1 MGP_C3HHeJ_G0025240.1 mouse_genomes_project 2 24761489 24772886 + MGP_C3HHeJ_P0053154 Cacfd1 protein_coding protein_coding MGP_C3HHeJ_T0053155.1 MGP_C3HHeJ_G0025240.1 mouse_genomes_project 2 24761489 24772886 + MGP_C3HHeJ_P0053155 Cacfd1 protein_coding protein_coding MGP_C3HHeJ_T0053156.1 MGP_C3HHeJ_G0025240.1 mouse_genomes_project 2 24761576 24769985 + Cacfd1 protein_coding processed_transcript MGP_C3HHeJ_T0053157.1 MGP_C3HHeJ_G0025240.1 mouse_genomes_project 2 24761645 24767467 + MGP_C3HHeJ_P0053157 Cacfd1 protein_coding protein_coding MGP_C3HHeJ_T0053158.1 MGP_C3HHeJ_G0025240.1 mouse_genomes_project 2 24762156 24772095 + MGP_C3HHeJ_P0053158 Cacfd1 protein_coding protein_coding MGP_C3HHeJ_T0053159.1 MGP_C3HHeJ_G0025240.1 mouse_genomes_project 2 24767146 24768999 + Cacfd1 protein_coding retained_intron MGP_C3HHeJ_T0017691.1 MGP_C3HHeJ_G0015252.1 mouse_genomes_project 2 169678445 169679796 + BC046401 processed_transcript processed_transcript MGP_C3HHeJ_T0053294.1 MGP_C3HHeJ_G0025269.1 mouse_genomes_project 2 26765457 26902643 - MGP_C3HHeJ_P0053294 Cfap77 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053295.1 MGP_C3HHeJ_G0025269.1 mouse_genomes_project 2 26765461 26902658 - MGP_C3HHeJ_P0053295 Cfap77 protein_coding protein_coding MGP_C3HHeJ_T0053296.1 MGP_C3HHeJ_G0025269.1 mouse_genomes_project 2 26766226 26886092 - Cfap77 protein_coding processed_transcript MGP_C3HHeJ_T0053297.1 MGP_C3HHeJ_G0025269.1 mouse_genomes_project 2 26796845 26902685 - MGP_C3HHeJ_P0053297 Cfap77 protein_coding protein_coding MGP_C3HHeJ_T0053298.1 MGP_C3HHeJ_G0025269.1 mouse_genomes_project 2 26899515 26902678 - Cfap77 protein_coding processed_transcript MGP_C3HHeJ_T0055634.1 MGP_C3HHeJ_G0025850.1 mouse_genomes_project 2 90738560 90739252 - Ptprj protein_coding processed_transcript MGP_C3HHeJ_T0055635.1 MGP_C3HHeJ_G0025850.1 mouse_genomes_project 2 90738562 90794174 - MGP_C3HHeJ_P0055635 Ptprj protein_coding protein_coding MGP_C3HHeJ_T0055636.1 MGP_C3HHeJ_G0025850.1 mouse_genomes_project 2 90741925 90898012 - MGP_C3HHeJ_P0055636 Ptprj protein_coding protein_coding MGP_C3HHeJ_T0055637.1 MGP_C3HHeJ_G0025850.1 mouse_genomes_project 2 90741925 90786323 - MGP_C3HHeJ_P0055637 Ptprj protein_coding protein_coding MGP_C3HHeJ_T0058701.1 MGP_C3HHeJ_G0026536.1 mouse_genomes_project 2 166866799 166993334 + MGP_C3HHeJ_P0058701 Tox2 protein_coding protein_coding MGP_C3HHeJ_T0058702.1 MGP_C3HHeJ_G0026536.1 mouse_genomes_project 2 166868227 166942043 + MGP_C3HHeJ_P0058702 Tox2 protein_coding protein_coding MGP_C3HHeJ_T0058703.1 MGP_C3HHeJ_G0026536.1 mouse_genomes_project 2 166891378 166992466 + MGP_C3HHeJ_P0058703 Tox2 protein_coding protein_coding MGP_C3HHeJ_T0058704.1 MGP_C3HHeJ_G0026536.1 mouse_genomes_project 2 166891469 166992266 + MGP_C3HHeJ_P0058704 Tox2 protein_coding protein_coding MGP_C3HHeJ_T0058705.1 MGP_C3HHeJ_G0026536.1 mouse_genomes_project 2 166989541 166992266 + MGP_C3HHeJ_P0058705 Tox2 protein_coding protein_coding MGP_C3HHeJ_T0053723.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30226256 30313469 + MGP_C3HHeJ_P0053723 Prrc2b protein_coding protein_coding MGP_C3HHeJ_T0053724.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30226322 30313454 + MGP_C3HHeJ_P0053724 Prrc2b protein_coding protein_coding MGP_C3HHeJ_T0053725.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30259688 30310094 + MGP_C3HHeJ_P0053725 Prrc2b protein_coding protein_coding MGP_C3HHeJ_T0053726.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30284675 30297950 + Prrc2b protein_coding processed_transcript MGP_C3HHeJ_T0053727.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30290489 30297609 + MGP_C3HHeJ_P0053727 Prrc2b protein_coding protein_coding MGP_C3HHeJ_T0053728.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30294369 30297904 + MGP_C3HHeJ_P0053728 Prrc2b protein_coding protein_coding MGP_C3HHeJ_T0053729.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30295503 30297448 + Prrc2b protein_coding processed_transcript MGP_C3HHeJ_T0053730.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30295571 30299659 + Prrc2b protein_coding processed_transcript MGP_C3HHeJ_T0053731.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30297821 30300611 + Prrc2b protein_coding processed_transcript MGP_C3HHeJ_T0053732.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30298059 30299727 + Prrc2b protein_coding processed_transcript MGP_C3HHeJ_T0059234.1 MGP_C3HHeJ_G0026678.1 mouse_genomes_project 2 178028451 178031136 + MGP_C3HHeJ_P0059234 1700010B08Rik protein_coding protein_coding MGP_C3HHeJ_T0003917.1 MGP_C3HHeJ_G0003491.1 mouse_genomes_project 2 65373852 65378784 + Gm13618 antisense antisense MGP_C3HHeJ_T0054896.1 MGP_C3HHeJ_G0025547.1 mouse_genomes_project 2 70038739 70090085 + MGP_C3HHeJ_P0054896 Gorasp2 protein_coding protein_coding MGP_C3HHeJ_T0054897.1 MGP_C3HHeJ_G0025547.1 mouse_genomes_project 2 70038739 70069571 + MGP_C3HHeJ_P0054897 Gorasp2 protein_coding protein_coding MGP_C3HHeJ_T0054898.1 MGP_C3HHeJ_G0025547.1 mouse_genomes_project 2 70038739 70069553 + MGP_C3HHeJ_P0054898 Gorasp2 protein_coding protein_coding MGP_C3HHeJ_T0054899.1 MGP_C3HHeJ_G0025547.1 mouse_genomes_project 2 70038753 70067188 + MGP_C3HHeJ_P0054899 Gorasp2 protein_coding protein_coding MGP_C3HHeJ_T0054900.1 MGP_C3HHeJ_G0025547.1 mouse_genomes_project 2 70039363 70055778 + Gorasp2 protein_coding processed_transcript MGP_C3HHeJ_T0054901.1 MGP_C3HHeJ_G0025547.1 mouse_genomes_project 2 70065640 70069549 + Gorasp2 protein_coding processed_transcript MGP_C3HHeJ_T0056942.1 MGP_C3HHeJ_G0026126.1 mouse_genomes_project 2 123880899 123900998 + MGP_C3HHeJ_P0056942 Trim69 protein_coding protein_coding MGP_C3HHeJ_T0056943.1 MGP_C3HHeJ_G0026126.1 mouse_genomes_project 2 123881001 123900995 + Trim69 protein_coding processed_transcript MGP_C3HHeJ_T0007093.1 MGP_C3HHeJ_G0005812.1 mouse_genomes_project 2 32110867 32117193 - Gm13403 lincRNA lincRNA MGP_C3HHeJ_T0007094.1 MGP_C3HHeJ_G0005812.1 mouse_genomes_project 2 32112974 32117225 - Gm13403 lincRNA lincRNA MGP_C3HHeJ_T0055608.1 MGP_C3HHeJ_G0025833.1 mouse_genomes_project 2 90021668 90026432 - MGP_C3HHeJ_P0055608 Olfr1254 protein_coding protein_coding MGP_C3HHeJ_T0055609.1 MGP_C3HHeJ_G0025833.1 mouse_genomes_project 2 90021668 90022613 - MGP_C3HHeJ_P0055609 Olfr1254 protein_coding protein_coding MGP_C3HHeJ_T0100443.1 MGP_C3HHeJ_G0038637.1 mouse_genomes_project 2 30778686 30778823 + Gm26236 snoRNA snoRNA MGP_C3HHeJ_T0058955.1 MGP_C3HHeJ_G0026611.1 mouse_genomes_project 2 169185244 169193079 - MGP_C3HHeJ_P0058955 Ocstamp protein_coding protein_coding MGP_C3HHeJ_T0054421.1 MGP_C3HHeJ_G0025458.1 mouse_genomes_project 2 48958038 48975079 - Mmadhc protein_coding processed_transcript MGP_C3HHeJ_T0054422.1 MGP_C3HHeJ_G0025458.1 mouse_genomes_project 2 48958038 48975101 - MGP_C3HHeJ_P0054422 Mmadhc protein_coding protein_coding MGP_C3HHeJ_T0054423.1 MGP_C3HHeJ_G0025458.1 mouse_genomes_project 2 48958507 48975071 - Mmadhc protein_coding processed_transcript MGP_C3HHeJ_T0054424.1 MGP_C3HHeJ_G0025458.1 mouse_genomes_project 2 48959298 48975065 - MGP_C3HHeJ_P0054424 Mmadhc protein_coding protein_coding MGP_C3HHeJ_T0054425.1 MGP_C3HHeJ_G0025458.1 mouse_genomes_project 2 48959311 48974807 - Mmadhc protein_coding processed_transcript MGP_C3HHeJ_T0054426.1 MGP_C3HHeJ_G0025458.1 mouse_genomes_project 2 48959323 48967357 - Mmadhc protein_coding processed_transcript MGP_C3HHeJ_T0054427.1 MGP_C3HHeJ_G0025458.1 mouse_genomes_project 2 48966010 48975060 - Mmadhc protein_coding processed_transcript MGP_C3HHeJ_T0054428.1 MGP_C3HHeJ_G0025458.1 mouse_genomes_project 2 48966023 48975185 - MGP_C3HHeJ_P0054428 Mmadhc protein_coding protein_coding MGP_C3HHeJ_T0013639.1 MGP_C3HHeJ_G0011743.1 mouse_genomes_project 2 145827125 145827926 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013593.1 MGP_C3HHeJ_G0011697.1 mouse_genomes_project 2 123043641 123043874 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013649.1 MGP_C3HHeJ_G0011753.1 mouse_genomes_project 2 148454389 148454701 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013663.1 MGP_C3HHeJ_G0011767.1 mouse_genomes_project 2 152241645 152242364 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053858.1 MGP_C3HHeJ_G0025349.1 mouse_genomes_project 2 30724652 30737954 + MGP_C3HHeJ_P0053858 Ak1 protein_coding protein_coding MGP_C3HHeJ_T0053859.1 MGP_C3HHeJ_G0025349.1 mouse_genomes_project 2 30728331 30737950 + MGP_C3HHeJ_P0053859 Ak1 protein_coding protein_coding MGP_C3HHeJ_T0053860.1 MGP_C3HHeJ_G0025349.1 mouse_genomes_project 2 30728332 30734070 + MGP_C3HHeJ_P0053860 Ak1 protein_coding protein_coding MGP_C3HHeJ_T0053861.1 MGP_C3HHeJ_G0025349.1 mouse_genomes_project 2 30731284 30734033 + MGP_C3HHeJ_P0053861 Ak1 protein_coding protein_coding MGP_C3HHeJ_T0053862.1 MGP_C3HHeJ_G0025349.1 mouse_genomes_project 2 30732398 30737948 + MGP_C3HHeJ_P0053862 Ak1 protein_coding protein_coding MGP_C3HHeJ_T0053863.1 MGP_C3HHeJ_G0025349.1 mouse_genomes_project 2 30732415 30736296 + Ak1 protein_coding retained_intron MGP_C3HHeJ_T0101903.1 MGP_C3HHeJ_G0039868.1 mouse_genomes_project 2 86993124 86994063 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0055474.1 MGP_C3HHeJ_G0025722.1 mouse_genomes_project 2 87060594 87061533 - MGP_C3HHeJ_P0055474 Olfr1107 protein_coding protein_coding MGP_C3HHeJ_T0059044.1 MGP_C3HHeJ_G0026625.1 mouse_genomes_project 2 170938881 170966152 - MGP_C3HHeJ_P0059044 Znfx1 protein_coding protein_coding MGP_C3HHeJ_T0059045.1 MGP_C3HHeJ_G0026625.1 mouse_genomes_project 2 170938887 170946584 - MGP_C3HHeJ_P0059045 Znfx1 protein_coding protein_coding MGP_C3HHeJ_T0059046.1 MGP_C3HHeJ_G0026625.1 mouse_genomes_project 2 170947114 170963563 - MGP_C3HHeJ_P0059046 Znfx1 protein_coding protein_coding MGP_C3HHeJ_T0059047.1 MGP_C3HHeJ_G0026625.1 mouse_genomes_project 2 170947199 170965854 - MGP_C3HHeJ_P0059047 Znfx1 protein_coding protein_coding MGP_C3HHeJ_T0059048.1 MGP_C3HHeJ_G0026625.1 mouse_genomes_project 2 170952167 170965777 - Znfx1 protein_coding retained_intron MGP_C3HHeJ_T0053174.1 MGP_C3HHeJ_G0025245.1 mouse_genomes_project 2 24918988 24937637 + MGP_C3HHeJ_P0053174 Dbh protein_coding protein_coding MGP_C3HHeJ_T0053175.1 MGP_C3HHeJ_G0025245.1 mouse_genomes_project 2 24931529 24931809 + Dbh protein_coding processed_transcript MGP_C3HHeJ_T0056884.1 MGP_C3HHeJ_G0026113.1 mouse_genomes_project 2 123082918 123100209 - MGP_C3HHeJ_P0056884 Serinc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056892.1 MGP_C3HHeJ_G0026113.1 mouse_genomes_project 2 123095676 123101160 - MGP_C3HHeJ_P0056892 Serinc4 protein_coding protein_coding MGP_C3HHeJ_T0056893.1 MGP_C3HHeJ_G0026113.1 mouse_genomes_project 2 123095676 123101072 - MGP_C3HHeJ_P0056893 Serinc4 protein_coding protein_coding MGP_C3HHeJ_T0056894.1 MGP_C3HHeJ_G0026113.1 mouse_genomes_project 2 123095688 123100209 - MGP_C3HHeJ_P0056894 Serinc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056895.1 MGP_C3HHeJ_G0026113.1 mouse_genomes_project 2 123095746 123100203 - MGP_C3HHeJ_P0056895 Serinc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056896.1 MGP_C3HHeJ_G0026113.1 mouse_genomes_project 2 123096505 123098105 - Serinc4 protein_coding retained_intron MGP_C3HHeJ_T0052937.1 MGP_C3HHeJ_G0025201.1 mouse_genomes_project 2 23397972 23398955 + MGP_C3HHeJ_P0052937 Bmyc protein_coding protein_coding MGP_C3HHeJ_T0059597.1 MGP_C3HHeJ_G0026750.1 mouse_genomes_project 2 186304794 186310222 - MGP_C3HHeJ_P0059597 Rgs19 protein_coding protein_coding MGP_C3HHeJ_T0059598.1 MGP_C3HHeJ_G0026750.1 mouse_genomes_project 2 186304800 186305863 - MGP_C3HHeJ_P0059598 Rgs19 protein_coding protein_coding MGP_C3HHeJ_T0059599.1 MGP_C3HHeJ_G0026750.1 mouse_genomes_project 2 186304803 186310242 - MGP_C3HHeJ_P0059599 Rgs19 protein_coding protein_coding MGP_C3HHeJ_T0059600.1 MGP_C3HHeJ_G0026750.1 mouse_genomes_project 2 186304885 186308139 - MGP_C3HHeJ_P0059600 Rgs19 protein_coding protein_coding MGP_C3HHeJ_T0059601.1 MGP_C3HHeJ_G0026750.1 mouse_genomes_project 2 186304888 186310252 - MGP_C3HHeJ_P0059601 Rgs19 protein_coding protein_coding MGP_C3HHeJ_T0059602.1 MGP_C3HHeJ_G0026750.1 mouse_genomes_project 2 186305697 186309953 - Rgs19 protein_coding processed_transcript MGP_C3HHeJ_T0059603.1 MGP_C3HHeJ_G0026750.1 mouse_genomes_project 2 186305782 186310271 - Rgs19 protein_coding processed_transcript MGP_C3HHeJ_T0059604.1 MGP_C3HHeJ_G0026750.1 mouse_genomes_project 2 186306024 186310229 - Rgs19 protein_coding processed_transcript MGP_C3HHeJ_T0056257.1 MGP_C3HHeJ_G0025956.1 mouse_genomes_project 2 107929727 107933229 - MGP_C3HHeJ_P0056257 Fshb protein_coding protein_coding MGP_C3HHeJ_T0054050.1 MGP_C3HHeJ_G0025377.1 mouse_genomes_project 2 33067299 33088662 - MGP_C3HHeJ_P0054050 Psmd5 protein_coding protein_coding MGP_C3HHeJ_T0054051.1 MGP_C3HHeJ_G0025377.1 mouse_genomes_project 2 33069671 33088633 - Psmd5 protein_coding retained_intron MGP_C3HHeJ_T0054052.1 MGP_C3HHeJ_G0025377.1 mouse_genomes_project 2 33070012 33075261 - MGP_C3HHeJ_P0054052 Psmd5 protein_coding protein_coding MGP_C3HHeJ_T0054053.1 MGP_C3HHeJ_G0025377.1 mouse_genomes_project 2 33084638 33092668 - Psmd5 protein_coding processed_transcript MGP_C3HHeJ_T0054054.1 MGP_C3HHeJ_G0025377.1 mouse_genomes_project 2 33088807 33089910 - Psmd5 protein_coding processed_transcript MGP_C3HHeJ_T0003992.1 MGP_C3HHeJ_G0003537.1 mouse_genomes_project 2 118232368 118264419 - Gm13990 antisense antisense MGP_C3HHeJ_T0010346.1 MGP_C3HHeJ_G0008479.1 mouse_genomes_project 2 92816225 92816288 - Mir7000 miRNA miRNA MGP_C3HHeJ_T0052744.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22894328 22904891 - MGP_C3HHeJ_P0052744 Ndor1 protein_coding protein_coding MGP_C3HHeJ_T0052745.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22894370 22904894 - MGP_C3HHeJ_P0052745 Ndor1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052746.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22895077 22897494 - Ndor1 protein_coding processed_transcript MGP_C3HHeJ_T0052747.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22896736 22904917 - MGP_C3HHeJ_P0052747 Ndor1 protein_coding protein_coding MGP_C3HHeJ_T0052748.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22896935 22904894 - MGP_C3HHeJ_P0052748 Ndor1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052749.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22897094 22897979 - Ndor1 protein_coding retained_intron MGP_C3HHeJ_T0052750.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22898979 22904854 - MGP_C3HHeJ_P0052750 Ndor1 protein_coding protein_coding MGP_C3HHeJ_T0052751.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22899007 22899850 - Ndor1 protein_coding retained_intron MGP_C3HHeJ_T0052752.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22899631 22904924 - MGP_C3HHeJ_P0052752 Ndor1 protein_coding protein_coding MGP_C3HHeJ_T0052753.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22899682 22904876 - Ndor1 protein_coding processed_transcript MGP_C3HHeJ_T0052754.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22900995 22904769 - Ndor1 protein_coding retained_intron MGP_C3HHeJ_T0052755.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22901255 22905530 - MGP_C3HHeJ_P0052755 Ndor1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056191.1 MGP_C3HHeJ_G0025943.1 mouse_genomes_project 2 105530954 105592777 - MGP_C3HHeJ_P0056191 Qser1 protein_coding protein_coding MGP_C3HHeJ_T0010395.1 MGP_C3HHeJ_G0008528.1 mouse_genomes_project 2 169732635 169732740 - Gm22692 miRNA miRNA MGP_C3HHeJ_T0058031.1 MGP_C3HHeJ_G0026404.1 mouse_genomes_project 2 156167098 156183712 + Ccm2l protein_coding processed_transcript MGP_C3HHeJ_T0058032.1 MGP_C3HHeJ_G0026404.1 mouse_genomes_project 2 156167127 156172240 + Ccm2l protein_coding processed_transcript MGP_C3HHeJ_T0058033.1 MGP_C3HHeJ_G0026404.1 mouse_genomes_project 2 156167141 156172051 + MGP_C3HHeJ_P0058033 Ccm2l protein_coding protein_coding MGP_C3HHeJ_T0058034.1 MGP_C3HHeJ_G0026404.1 mouse_genomes_project 2 156167150 156183176 + MGP_C3HHeJ_P0058034 Ccm2l protein_coding protein_coding MGP_C3HHeJ_T0003932.1 MGP_C3HHeJ_G0003501.1 mouse_genomes_project 2 71685001 71692621 - Rapgef4os2 antisense antisense MGP_C3HHeJ_T0007298.1 MGP_C3HHeJ_G0005979.1 mouse_genomes_project 2 166504970 166506928 - lincRNA lincRNA MGP_C3HHeJ_T0013594.1 MGP_C3HHeJ_G0011698.1 mouse_genomes_project 2 123377781 123378741 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017675.1 MGP_C3HHeJ_G0015247.1 mouse_genomes_project 2 161822151 161825295 - Snhg17 processed_transcript lincRNA MGP_C3HHeJ_T0017676.1 MGP_C3HHeJ_G0015247.1 mouse_genomes_project 2 161823758 161829962 - Snhg17 processed_transcript lincRNA MGP_C3HHeJ_T0017677.1 MGP_C3HHeJ_G0015247.1 mouse_genomes_project 2 161824216 161829974 - Snhg17 processed_transcript retained_intron MGP_C3HHeJ_T0017678.1 MGP_C3HHeJ_G0015247.1 mouse_genomes_project 2 161824216 161829971 - Snhg17 processed_transcript lincRNA MGP_C3HHeJ_T0017679.1 MGP_C3HHeJ_G0015247.1 mouse_genomes_project 2 161824216 161830032 - Snhg17 processed_transcript lincRNA MGP_C3HHeJ_T0017680.1 MGP_C3HHeJ_G0015247.1 mouse_genomes_project 2 161824236 161829965 - Snhg17 processed_transcript retained_intron MGP_C3HHeJ_T0017681.1 MGP_C3HHeJ_G0015247.1 mouse_genomes_project 2 161824473 161826915 - Snhg17 processed_transcript lincRNA MGP_C3HHeJ_T0017682.1 MGP_C3HHeJ_G0015247.1 mouse_genomes_project 2 161827689 161829927 - Snhg17 processed_transcript lincRNA MGP_C3HHeJ_T0017683.1 MGP_C3HHeJ_G0015247.1 mouse_genomes_project 2 161829318 161829994 - Snhg17 processed_transcript lincRNA MGP_C3HHeJ_T0054878.1 MGP_C3HHeJ_G0025542.1 mouse_genomes_project 2 69399111 69791484 + MGP_C3HHeJ_P0054878 Myo3b protein_coding protein_coding MGP_C3HHeJ_T0054879.1 MGP_C3HHeJ_G0025542.1 mouse_genomes_project 2 69445738 69791487 + MGP_C3HHeJ_P0054879 Myo3b protein_coding protein_coding MGP_C3HHeJ_T0054880.1 MGP_C3HHeJ_G0025542.1 mouse_genomes_project 2 69458861 69545181 + MGP_C3HHeJ_P0054880 Myo3b protein_coding protein_coding MGP_C3HHeJ_T0056312.1 MGP_C3HHeJ_G0025972.1 mouse_genomes_project 2 112198732 112199671 - MGP_C3HHeJ_P0056312 Olfr1275 protein_coding protein_coding MGP_C3HHeJ_T0059273.1 MGP_C3HHeJ_G0026685.1 mouse_genomes_project 2 178761001 178772638 - MGP_C3HHeJ_P0059273 Ctsz protein_coding protein_coding MGP_C3HHeJ_T0057799.1 MGP_C3HHeJ_G0026327.1 mouse_genomes_project 2 151294704 151302121 - MGP_C3HHeJ_P0057799 Cd93 protein_coding protein_coding MGP_C3HHeJ_T0004064.1 MGP_C3HHeJ_G0003592.1 mouse_genomes_project 2 158879795 158882430 + Gssos1 antisense antisense MGP_C3HHeJ_T0004048.1 MGP_C3HHeJ_G0003578.1 mouse_genomes_project 2 149995973 149996965 + 6430503K07Rik antisense antisense MGP_C3HHeJ_T0017665.1 MGP_C3HHeJ_G0015242.1 mouse_genomes_project 2 156465518 156470166 - 2500004C02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017666.1 MGP_C3HHeJ_G0015242.1 mouse_genomes_project 2 156466877 156467584 - 2500004C02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017667.1 MGP_C3HHeJ_G0015242.1 mouse_genomes_project 2 156466997 156470429 - 2500004C02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0010342.1 MGP_C3HHeJ_G0008475.1 mouse_genomes_project 2 84487338 84487402 - Mir130a miRNA miRNA MGP_C3HHeJ_T0052889.1 MGP_C3HHeJ_G0025188.1 mouse_genomes_project 2 23243129 23247365 + MGP_C3HHeJ_P0052889 Edf1 protein_coding protein_coding MGP_C3HHeJ_T0052890.1 MGP_C3HHeJ_G0025188.1 mouse_genomes_project 2 23243153 23246644 + Edf1 protein_coding processed_transcript MGP_C3HHeJ_T0052891.1 MGP_C3HHeJ_G0025188.1 mouse_genomes_project 2 23243179 23246547 + Edf1 protein_coding processed_transcript MGP_C3HHeJ_T0052892.1 MGP_C3HHeJ_G0025188.1 mouse_genomes_project 2 23243421 23247144 + Edf1 protein_coding processed_transcript MGP_C3HHeJ_T0052893.1 MGP_C3HHeJ_G0025188.1 mouse_genomes_project 2 23245867 23247365 + Edf1 protein_coding processed_transcript MGP_C3HHeJ_T0055523.1 MGP_C3HHeJ_G0025761.1 mouse_genomes_project 2 88037642 88038587 - MGP_C3HHeJ_P0055523 Olfr1155 protein_coding protein_coding MGP_C3HHeJ_T0057813.1 MGP_C3HHeJ_G0026334.1 mouse_genomes_project 2 151645645 151649711 + MGP_C3HHeJ_P0057813 Cst12 protein_coding protein_coding MGP_C3HHeJ_T0057814.1 MGP_C3HHeJ_G0026334.1 mouse_genomes_project 2 151645656 151649820 + MGP_C3HHeJ_P0057814 Cst12 protein_coding protein_coding MGP_C3HHeJ_T0007180.1 MGP_C3HHeJ_G0005885.1 mouse_genomes_project 2 93545029 93557138 - Gm13802 lincRNA lincRNA MGP_C3HHeJ_T0059323.1 MGP_C3HHeJ_G0026700.1 mouse_genomes_project 2 184589096 184614730 + MGP_C3HHeJ_P0059323 Ss18l1 protein_coding protein_coding MGP_C3HHeJ_T0059264.1 MGP_C3HHeJ_G0026683.1 mouse_genomes_project 2 178659879 178677300 - MGP_C3HHeJ_P0059264 Gm20721 protein_coding protein_coding MGP_C3HHeJ_T0010382.1 MGP_C3HHeJ_G0008515.1 mouse_genomes_project 2 155859801 155859886 - Gm23802 miRNA miRNA MGP_C3HHeJ_T0054069.1 MGP_C3HHeJ_G0025381.1 mouse_genomes_project 2 33203573 33286741 - MGP_C3HHeJ_P0054069 Hc protein_coding protein_coding MGP_C3HHeJ_T0054070.1 MGP_C3HHeJ_G0025381.1 mouse_genomes_project 2 33203945 33242371 - MGP_C3HHeJ_P0054070 Hc protein_coding protein_coding MGP_C3HHeJ_T0054071.1 MGP_C3HHeJ_G0025381.1 mouse_genomes_project 2 33212754 33216110 - Hc protein_coding processed_transcript MGP_C3HHeJ_T0054072.1 MGP_C3HHeJ_G0025381.1 mouse_genomes_project 2 33212848 33223577 - Hc protein_coding retained_intron MGP_C3HHeJ_T0054073.1 MGP_C3HHeJ_G0025381.1 mouse_genomes_project 2 33217729 33229053 - Hc protein_coding processed_transcript MGP_C3HHeJ_T0003941.1 MGP_C3HHeJ_G0003507.1 mouse_genomes_project 2 73102708 73107072 + Chrna1os antisense antisense MGP_C3HHeJ_T0003942.1 MGP_C3HHeJ_G0003507.1 mouse_genomes_project 2 73102718 73107093 + Chrna1os antisense antisense MGP_C3HHeJ_T0053149.1 MGP_C3HHeJ_G0025239.1 mouse_genomes_project 2 24728994 24753998 + MGP_C3HHeJ_P0053149 Adamts13 protein_coding protein_coding MGP_C3HHeJ_T0053150.1 MGP_C3HHeJ_G0025239.1 mouse_genomes_project 2 24729071 24761192 + MGP_C3HHeJ_P0053150 Adamts13 protein_coding protein_coding MGP_C3HHeJ_T0053151.1 MGP_C3HHeJ_G0025239.1 mouse_genomes_project 2 24756350 24761009 + Adamts13 protein_coding processed_transcript MGP_C3HHeJ_T0055571.1 MGP_C3HHeJ_G0025805.1 mouse_genomes_project 2 89223032 89235959 - MGP_C3HHeJ_P0055571 Olfr1219 protein_coding protein_coding MGP_C3HHeJ_T0055472.1 MGP_C3HHeJ_G0025720.1 mouse_genomes_project 2 87020085 87021024 - MGP_C3HHeJ_P0055472 Olfr1105 protein_coding protein_coding MGP_C3HHeJ_T0052942.1 MGP_C3HHeJ_G0025205.1 mouse_genomes_project 2 23482188 23502203 - MGP_C3HHeJ_P0052942 Glt6d1 protein_coding protein_coding MGP_C3HHeJ_T0052943.1 MGP_C3HHeJ_G0025205.1 mouse_genomes_project 2 23483543 23502186 - Glt6d1 protein_coding processed_transcript MGP_C3HHeJ_T0053693.1 MGP_C3HHeJ_G0025327.1 mouse_genomes_project 2 29930688 30000185 + MGP_C3HHeJ_P0053693 Lamc3 protein_coding protein_coding MGP_C3HHeJ_T0053694.1 MGP_C3HHeJ_G0025327.1 mouse_genomes_project 2 29930741 30001478 + MGP_C3HHeJ_P0053694 Lamc3 protein_coding protein_coding MGP_C3HHeJ_T0053695.1 MGP_C3HHeJ_G0025327.1 mouse_genomes_project 2 29979130 29979769 + Lamc3 protein_coding processed_transcript MGP_C3HHeJ_T0010323.1 MGP_C3HHeJ_G0008456.1 mouse_genomes_project 2 36531792 36531874 - Gm44455 miRNA miRNA MGP_C3HHeJ_T0055121.1 MGP_C3HHeJ_G0025597.1 mouse_genomes_project 2 76014529 76015953 + Osbpl6 protein_coding processed_transcript MGP_C3HHeJ_T0055122.1 MGP_C3HHeJ_G0025597.1 mouse_genomes_project 2 76014559 76202497 + MGP_C3HHeJ_P0055122 Osbpl6 protein_coding protein_coding MGP_C3HHeJ_T0055123.1 MGP_C3HHeJ_G0025597.1 mouse_genomes_project 2 76014559 76202501 + MGP_C3HHeJ_P0055123 Osbpl6 protein_coding protein_coding MGP_C3HHeJ_T0055124.1 MGP_C3HHeJ_G0025597.1 mouse_genomes_project 2 76014579 76198450 + MGP_C3HHeJ_P0055124 Osbpl6 protein_coding protein_coding MGP_C3HHeJ_T0055125.1 MGP_C3HHeJ_G0025597.1 mouse_genomes_project 2 76014582 76015489 + Osbpl6 protein_coding processed_transcript MGP_C3HHeJ_T0055126.1 MGP_C3HHeJ_G0025597.1 mouse_genomes_project 2 76100186 76142544 + Osbpl6 protein_coding processed_transcript MGP_C3HHeJ_T0055127.1 MGP_C3HHeJ_G0025597.1 mouse_genomes_project 2 76149317 76197899 + MGP_C3HHeJ_P0055127 Osbpl6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055128.1 MGP_C3HHeJ_G0025597.1 mouse_genomes_project 2 76169097 76181052 + Osbpl6 protein_coding processed_transcript MGP_C3HHeJ_T0052938.1 MGP_C3HHeJ_G0025202.1 mouse_genomes_project 2 23423352 23426424 + MGP_C3HHeJ_P0052938 Obp2b protein_coding protein_coding MGP_C3HHeJ_T0052939.1 MGP_C3HHeJ_G0025202.1 mouse_genomes_project 2 23424359 23426459 + MGP_C3HHeJ_P0052939 Obp2b protein_coding unknown_likely_coding MGP_C3HHeJ_T0055413.1 MGP_C3HHeJ_G0025664.1 mouse_genomes_project 2 85484278 85485220 + MGP_C3HHeJ_P0055413 Olfr1008 protein_coding protein_coding MGP_C3HHeJ_T0056336.1 MGP_C3HHeJ_G0025996.1 mouse_genomes_project 2 113222095 113223034 - MGP_C3HHeJ_P0056336 protein_coding protein_coding MGP_C3HHeJ_T0003893.1 MGP_C3HHeJ_G0003473.1 mouse_genomes_project 2 36674012 36678413 - Gm13584 antisense antisense MGP_C3HHeJ_T0001014.1 MGP_C3HHeJ_G0000951.1 mouse_genomes_project 2 11496588 11500060 + TEC TEC MGP_C3HHeJ_T0057882.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154522876 154547660 + MGP_C3HHeJ_P0057882 Nsfl1c protein_coding protein_coding MGP_C3HHeJ_T0057883.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154522883 154543322 + Nsfl1c protein_coding retained_intron MGP_C3HHeJ_T0057884.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154522984 154537454 + Nsfl1c protein_coding retained_intron MGP_C3HHeJ_T0057885.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154522987 154547655 + MGP_C3HHeJ_P0057885 Nsfl1c protein_coding protein_coding MGP_C3HHeJ_T0057886.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154522998 154547764 + MGP_C3HHeJ_P0057886 Nsfl1c protein_coding protein_coding MGP_C3HHeJ_T0057887.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154523005 154539640 + Nsfl1c protein_coding retained_intron MGP_C3HHeJ_T0057888.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154538543 154546012 + Nsfl1c protein_coding processed_transcript MGP_C3HHeJ_T0057889.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154539196 154547339 + Nsfl1c protein_coding retained_intron MGP_C3HHeJ_T0057890.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154539953 154546042 + Nsfl1c protein_coding retained_intron MGP_C3HHeJ_T0057891.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154545449 154547612 + Nsfl1c protein_coding retained_intron MGP_C3HHeJ_T0056296.1 MGP_C3HHeJ_G0025965.1 mouse_genomes_project 2 111327821 111330096 - MGP_C3HHeJ_P0056296 Fibin protein_coding protein_coding MGP_C3HHeJ_T0007185.1 MGP_C3HHeJ_G0005887.1 mouse_genomes_project 2 94737253 94750089 - lincRNA lincRNA MGP_C3HHeJ_T0007186.1 MGP_C3HHeJ_G0005887.1 mouse_genomes_project 2 94746359 94750108 - lincRNA lincRNA MGP_C3HHeJ_T0059618.1 MGP_C3HHeJ_G0026753.1 mouse_genomes_project 2 186377269 186445797 + MGP_C3HHeJ_P0059618 Myt1 protein_coding protein_coding MGP_C3HHeJ_T0059619.1 MGP_C3HHeJ_G0026753.1 mouse_genomes_project 2 186377333 186444043 + MGP_C3HHeJ_P0059619 Myt1 protein_coding protein_coding MGP_C3HHeJ_T0059620.1 MGP_C3HHeJ_G0026753.1 mouse_genomes_project 2 186380969 186411896 + Myt1 protein_coding processed_transcript MGP_C3HHeJ_T0059621.1 MGP_C3HHeJ_G0026753.1 mouse_genomes_project 2 186381243 186421820 + MGP_C3HHeJ_P0059621 Myt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059622.1 MGP_C3HHeJ_G0026753.1 mouse_genomes_project 2 186398503 186432416 + MGP_C3HHeJ_P0059622 Myt1 protein_coding protein_coding MGP_C3HHeJ_T0059623.1 MGP_C3HHeJ_G0026753.1 mouse_genomes_project 2 186412310 186445732 + Myt1 protein_coding retained_intron MGP_C3HHeJ_T0059624.1 MGP_C3HHeJ_G0026753.1 mouse_genomes_project 2 186413601 186423351 + Myt1 protein_coding processed_transcript MGP_C3HHeJ_T0059625.1 MGP_C3HHeJ_G0026753.1 mouse_genomes_project 2 186428008 186436909 + MGP_C3HHeJ_P0059625 Myt1 protein_coding protein_coding MGP_C3HHeJ_T0059626.1 MGP_C3HHeJ_G0026753.1 mouse_genomes_project 2 186436368 186438807 + Myt1 protein_coding retained_intron MGP_C3HHeJ_T0007213.1 MGP_C3HHeJ_G0005911.1 mouse_genomes_project 2 116671424 116683169 - 4930528P14Rik lincRNA lincRNA MGP_C3HHeJ_T0055559.1 MGP_C3HHeJ_G0025795.1 mouse_genomes_project 2 88984789 88985578 + MGP_C3HHeJ_P0055559 protein_coding protein_coding MGP_C3HHeJ_T0007333.1 MGP_C3HHeJ_G0006009.1 mouse_genomes_project 2 173713112 173977631 - lincRNA lincRNA MGP_C3HHeJ_T0007334.1 MGP_C3HHeJ_G0006009.1 mouse_genomes_project 2 173713142 173977631 - lincRNA lincRNA MGP_C3HHeJ_T0057625.1 MGP_C3HHeJ_G0026286.1 mouse_genomes_project 2 142685534 142742113 - MGP_C3HHeJ_P0057625 Esf1 protein_coding protein_coding MGP_C3HHeJ_T0057626.1 MGP_C3HHeJ_G0026286.1 mouse_genomes_project 2 142717680 142724212 - Esf1 protein_coding retained_intron MGP_C3HHeJ_T0057628.1 MGP_C3HHeJ_G0026286.1 mouse_genomes_project 2 142725792 142730369 - Esf1 protein_coding retained_intron MGP_C3HHeJ_T0057629.1 MGP_C3HHeJ_G0026286.1 mouse_genomes_project 2 142725827 142727750 - Esf1 protein_coding retained_intron MGP_C3HHeJ_T0057630.1 MGP_C3HHeJ_G0026286.1 mouse_genomes_project 2 142729248 142730369 - Esf1 protein_coding retained_intron MGP_C3HHeJ_T0098285.1 MGP_C3HHeJ_G0036497.1 mouse_genomes_project 2 175463725 175463989 - Gm26489 scaRNA scaRNA MGP_C3HHeJ_T0054525.1 MGP_C3HHeJ_G0025480.1 mouse_genomes_project 2 57201915 57294481 - MGP_C3HHeJ_P0054525 Acvr1c protein_coding protein_coding MGP_C3HHeJ_T0054526.1 MGP_C3HHeJ_G0025480.1 mouse_genomes_project 2 57201915 57294481 - MGP_C3HHeJ_P0054526 Acvr1c protein_coding protein_coding MGP_C3HHeJ_T0054527.1 MGP_C3HHeJ_G0025480.1 mouse_genomes_project 2 57202098 57294409 - MGP_C3HHeJ_P0054527 Acvr1c protein_coding protein_coding MGP_C3HHeJ_T0054528.1 MGP_C3HHeJ_G0025480.1 mouse_genomes_project 2 57229140 57259312 - MGP_C3HHeJ_P0054528 Acvr1c protein_coding protein_coding MGP_C3HHeJ_T0013390.1 MGP_C3HHeJ_G0011494.1 mouse_genomes_project 2 49358273 49358685 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007264.1 MGP_C3HHeJ_G0005951.1 mouse_genomes_project 2 149624201 149635559 - Gm14114 lincRNA lincRNA MGP_C3HHeJ_T0054503.1 MGP_C3HHeJ_G0025475.1 mouse_genomes_project 2 55997240 56005225 - MGP_C3HHeJ_P0054503 Nr4a2 protein_coding protein_coding MGP_C3HHeJ_T0054504.1 MGP_C3HHeJ_G0025475.1 mouse_genomes_project 2 55997244 56015224 - MGP_C3HHeJ_P0054504 Nr4a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054505.1 MGP_C3HHeJ_G0025475.1 mouse_genomes_project 2 56002422 56005478 - Nr4a2 protein_coding processed_transcript MGP_C3HHeJ_T0054506.1 MGP_C3HHeJ_G0025475.1 mouse_genomes_project 2 56003411 56004813 - Nr4a2 protein_coding processed_transcript MGP_C3HHeJ_T0057234.1 MGP_C3HHeJ_G0026197.1 mouse_genomes_project 2 131045338 131065067 - MGP_C3HHeJ_P0057234 Zc3h8 protein_coding protein_coding MGP_C3HHeJ_T0057931.1 MGP_C3HHeJ_G0026368.1 mouse_genomes_project 2 155138939 155153157 + MGP_C3HHeJ_P0057931 Scrt2 protein_coding protein_coding MGP_C3HHeJ_T0057479.1 MGP_C3HHeJ_G0026254.1 mouse_genomes_project 2 134165223 134201183 + MGP_C3HHeJ_P0057479 protein_coding protein_coding MGP_C3HHeJ_T0057480.1 MGP_C3HHeJ_G0026254.1 mouse_genomes_project 2 134165223 134201183 + MGP_C3HHeJ_P0057480 protein_coding protein_coding MGP_C3HHeJ_T0013473.1 MGP_C3HHeJ_G0011577.1 mouse_genomes_project 2 78690155 78690606 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058209.1 MGP_C3HHeJ_G0026451.1 mouse_genomes_project 2 158650721 158657173 + MGP_C3HHeJ_P0058209 Trp53inp2 protein_coding protein_coding MGP_C3HHeJ_T0058210.1 MGP_C3HHeJ_G0026451.1 mouse_genomes_project 2 158652149 158660892 + MGP_C3HHeJ_P0058210 Trp53inp2 protein_coding protein_coding MGP_C3HHeJ_T0058211.1 MGP_C3HHeJ_G0026451.1 mouse_genomes_project 2 158652175 158657797 + MGP_C3HHeJ_P0058211 Trp53inp2 protein_coding protein_coding MGP_C3HHeJ_T0058212.1 MGP_C3HHeJ_G0026451.1 mouse_genomes_project 2 158652195 158657072 + Trp53inp2 protein_coding retained_intron MGP_C3HHeJ_T0058213.1 MGP_C3HHeJ_G0026451.1 mouse_genomes_project 2 158652537 158657084 + MGP_C3HHeJ_P0058213 Trp53inp2 protein_coding protein_coding MGP_C3HHeJ_T0013272.1 MGP_C3HHeJ_G0011376.1 mouse_genomes_project 2 2317734 2317959 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058793.1 MGP_C3HHeJ_G0026570.1 mouse_genomes_project 2 168184959 168215191 + MGP_C3HHeJ_P0058793 Gm20458 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011415.1 MGP_C3HHeJ_G0009548.1 mouse_genomes_project 2 118357477 118357790 + Gm24914 misc_RNA misc_RNA MGP_C3HHeJ_T0003863.1 MGP_C3HHeJ_G0003448.1 mouse_genomes_project 2 25085740 25090334 + AA645442 antisense antisense MGP_C3HHeJ_T0058861.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168594552 168602554 + MGP_C3HHeJ_P0058861 Ctsa protein_coding protein_coding MGP_C3HHeJ_T0058862.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168594552 168601464 + MGP_C3HHeJ_P0058862 Ctsa protein_coding protein_coding MGP_C3HHeJ_T0058863.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168594566 168595439 + Ctsa protein_coding processed_transcript MGP_C3HHeJ_T0058864.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168594580 168602554 + MGP_C3HHeJ_P0058864 Ctsa protein_coding protein_coding MGP_C3HHeJ_T0058865.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168594588 168595742 + MGP_C3HHeJ_P0058865 Ctsa protein_coding protein_coding MGP_C3HHeJ_T0058866.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168594605 168595459 + Ctsa protein_coding processed_transcript MGP_C3HHeJ_T0058867.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168594605 168597371 + MGP_C3HHeJ_P0058867 Ctsa protein_coding protein_coding MGP_C3HHeJ_T0058868.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168595486 168596101 + Ctsa protein_coding retained_intron MGP_C3HHeJ_T0058869.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168595494 168598468 + MGP_C3HHeJ_P0058869 Ctsa protein_coding protein_coding MGP_C3HHeJ_T0058870.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168595526 168596554 + Ctsa protein_coding retained_intron MGP_C3HHeJ_T0058871.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168595537 168597943 + MGP_C3HHeJ_P0058871 Ctsa protein_coding protein_coding MGP_C3HHeJ_T0058872.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168595709 168596873 + Ctsa protein_coding retained_intron MGP_C3HHeJ_T0058873.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168595709 168598501 + Ctsa protein_coding retained_intron MGP_C3HHeJ_T0058874.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168595752 168597938 + Ctsa protein_coding retained_intron MGP_C3HHeJ_T0058875.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168595989 168597401 + Ctsa protein_coding processed_transcript MGP_C3HHeJ_T0058876.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168596152 168597149 + Ctsa protein_coding retained_intron MGP_C3HHeJ_T0004079.1 MGP_C3HHeJ_G0003606.1 mouse_genomes_project 2 167183697 167226427 - Hnf4aos antisense antisense MGP_C3HHeJ_T0004080.1 MGP_C3HHeJ_G0003606.1 mouse_genomes_project 2 167183697 167226427 - Hnf4aos antisense antisense MGP_C3HHeJ_T0004081.1 MGP_C3HHeJ_G0003606.1 mouse_genomes_project 2 167184084 167226399 - Hnf4aos antisense antisense MGP_C3HHeJ_T0007247.1 MGP_C3HHeJ_G0005936.1 mouse_genomes_project 2 134740669 134758610 - Gm14095 lincRNA lincRNA MGP_C3HHeJ_T0013641.1 MGP_C3HHeJ_G0011745.1 mouse_genomes_project 2 146539312 146539740 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013494.1 MGP_C3HHeJ_G0011598.1 mouse_genomes_project 2 85542704 85543636 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010249.1 MGP_C3HHeJ_G0008382.1 mouse_genomes_project 2 7688554 7688675 + Gm22072 miRNA miRNA MGP_C3HHeJ_T0055431.1 MGP_C3HHeJ_G0025681.1 mouse_genomes_project 2 85921791 85926454 + MGP_C3HHeJ_P0055431 Olfr1036 protein_coding protein_coding MGP_C3HHeJ_T0004104.1 MGP_C3HHeJ_G0003624.1 mouse_genomes_project 2 176224557 176228152 + Gm14271 antisense antisense MGP_C3HHeJ_T0003921.1 MGP_C3HHeJ_G0003494.1 mouse_genomes_project 2 66716109 66742339 - Gm13601 antisense antisense MGP_C3HHeJ_T0057714.1 MGP_C3HHeJ_G0026308.1 mouse_genomes_project 2 147280070 147293855 + MGP_C3HHeJ_P0057714 Sec23b protein_coding protein_coding MGP_C3HHeJ_T0057715.1 MGP_C3HHeJ_G0026308.1 mouse_genomes_project 2 147280097 147318660 + MGP_C3HHeJ_P0057715 Sec23b protein_coding protein_coding MGP_C3HHeJ_T0057716.1 MGP_C3HHeJ_G0026308.1 mouse_genomes_project 2 147280122 147284045 + MGP_C3HHeJ_P0057716 Sec23b protein_coding protein_coding MGP_C3HHeJ_T0057717.1 MGP_C3HHeJ_G0026308.1 mouse_genomes_project 2 147280153 147284154 + Sec23b protein_coding processed_transcript MGP_C3HHeJ_T0057718.1 MGP_C3HHeJ_G0026308.1 mouse_genomes_project 2 147280160 147292638 + MGP_C3HHeJ_P0057718 Sec23b protein_coding protein_coding MGP_C3HHeJ_T0057719.1 MGP_C3HHeJ_G0026308.1 mouse_genomes_project 2 147280175 147290480 + MGP_C3HHeJ_P0057719 Sec23b protein_coding protein_coding MGP_C3HHeJ_T0057720.1 MGP_C3HHeJ_G0026308.1 mouse_genomes_project 2 147290726 147318660 + Sec23b protein_coding processed_transcript MGP_C3HHeJ_T0057721.1 MGP_C3HHeJ_G0026308.1 mouse_genomes_project 2 147302950 147308005 + Sec23b protein_coding processed_transcript MGP_C3HHeJ_T0101875.1 MGP_C3HHeJ_G0039840.1 mouse_genomes_project 2 33053697 33054462 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0057288.1 MGP_C3HHeJ_G0026214.1 mouse_genomes_project 2 132332377 132340237 - Snrpb protein_coding retained_intron MGP_C3HHeJ_T0057289.1 MGP_C3HHeJ_G0026214.1 mouse_genomes_project 2 132332598 132340337 - MGP_C3HHeJ_P0057289 Snrpb protein_coding protein_coding MGP_C3HHeJ_T0057290.1 MGP_C3HHeJ_G0026214.1 mouse_genomes_project 2 132332751 132340337 - MGP_C3HHeJ_P0057290 Snrpb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057291.1 MGP_C3HHeJ_G0026214.1 mouse_genomes_project 2 132337787 132340268 - Snrpb protein_coding retained_intron MGP_C3HHeJ_T0013262.1 MGP_C3HHeJ_G0011366.1 mouse_genomes_project 2 24647 25163 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013286.1 MGP_C3HHeJ_G0011390.1 mouse_genomes_project 2 12075051 12075386 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013379.1 MGP_C3HHeJ_G0011483.1 mouse_genomes_project 2 44970452 44970802 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057384.1 MGP_C3HHeJ_G0026236.1 mouse_genomes_project 2 133111569 133238526 + MGP_C3HHeJ_P0057384 Atrn protein_coding protein_coding MGP_C3HHeJ_T0057385.1 MGP_C3HHeJ_G0026236.1 mouse_genomes_project 2 133111575 133213842 + Atrn protein_coding retained_intron MGP_C3HHeJ_T0057386.1 MGP_C3HHeJ_G0026236.1 mouse_genomes_project 2 133112005 133143283 + Atrn protein_coding retained_intron MGP_C3HHeJ_T0057387.1 MGP_C3HHeJ_G0026236.1 mouse_genomes_project 2 133191123 133202915 + Atrn protein_coding retained_intron MGP_C3HHeJ_T0057388.1 MGP_C3HHeJ_G0026236.1 mouse_genomes_project 2 133204520 133213874 + Atrn protein_coding retained_intron MGP_C3HHeJ_T0099173.1 MGP_C3HHeJ_G0037367.1 mouse_genomes_project 2 2296958 2297145 - Gm23118 snRNA snRNA MGP_C3HHeJ_T0010390.1 MGP_C3HHeJ_G0008523.1 mouse_genomes_project 2 162236816 162236942 + Gm26141 miRNA miRNA MGP_C3HHeJ_T0013354.1 MGP_C3HHeJ_G0011458.1 mouse_genomes_project 2 35494214 35495237 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055501.1 MGP_C3HHeJ_G0025741.1 mouse_genomes_project 2 87677883 87684656 + MGP_C3HHeJ_P0055501 Olfr1130 protein_coding protein_coding MGP_C3HHeJ_T0010282.1 MGP_C3HHeJ_G0008415.1 mouse_genomes_project 2 7718711 7718813 + Mir297a-3 miRNA miRNA MGP_C3HHeJ_T0099180.1 MGP_C3HHeJ_G0037374.1 mouse_genomes_project 2 22857208 22857313 + Gm22572 snRNA snRNA MGP_C3HHeJ_T0053224.1 MGP_C3HHeJ_G0025254.1 mouse_genomes_project 2 26269457 26272957 + Ppp1r26 protein_coding processed_transcript MGP_C3HHeJ_T0053225.1 MGP_C3HHeJ_G0025254.1 mouse_genomes_project 2 26269523 26273281 + Ppp1r26 protein_coding processed_transcript MGP_C3HHeJ_T0053226.1 MGP_C3HHeJ_G0025254.1 mouse_genomes_project 2 26270595 26273117 + Ppp1r26 protein_coding processed_transcript MGP_C3HHeJ_T0053227.1 MGP_C3HHeJ_G0025254.1 mouse_genomes_project 2 26270595 26277943 + MGP_C3HHeJ_P0053227 Ppp1r26 protein_coding protein_coding MGP_C3HHeJ_T0053228.1 MGP_C3HHeJ_G0025254.1 mouse_genomes_project 2 26270595 26277940 + MGP_C3HHeJ_P0053228 Ppp1r26 protein_coding protein_coding MGP_C3HHeJ_T0058774.1 MGP_C3HHeJ_G0026563.1 mouse_genomes_project 2 168033232 168034933 + MGP_C3HHeJ_P0058774 Svs6 protein_coding protein_coding MGP_C3HHeJ_T0011403.1 MGP_C3HHeJ_G0009536.1 mouse_genomes_project 2 43805434 43805635 + Vis1 misc_RNA misc_RNA MGP_C3HHeJ_T0013558.1 MGP_C3HHeJ_G0011662.1 mouse_genomes_project 2 107100624 107100894 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058456.1 MGP_C3HHeJ_G0026485.1 mouse_genomes_project 2 160111684 160119781 + MGP_C3HHeJ_P0058456 Myl9 protein_coding protein_coding MGP_C3HHeJ_T0058457.1 MGP_C3HHeJ_G0026485.1 mouse_genomes_project 2 160111718 160119484 + Myl9 protein_coding processed_transcript MGP_C3HHeJ_T0058458.1 MGP_C3HHeJ_G0026485.1 mouse_genomes_project 2 160111721 160118657 + Myl9 protein_coding processed_transcript MGP_C3HHeJ_T0058459.1 MGP_C3HHeJ_G0026485.1 mouse_genomes_project 2 160116639 160119287 + Myl9 protein_coding processed_transcript MGP_C3HHeJ_T0007275.1 MGP_C3HHeJ_G0005959.1 mouse_genomes_project 2 153705398 153707880 - Gm26681 lincRNA lincRNA MGP_C3HHeJ_T0017564.1 MGP_C3HHeJ_G0015189.1 mouse_genomes_project 2 71195599 71198281 + Gm13663 processed_transcript processed_transcript MGP_C3HHeJ_T0017565.1 MGP_C3HHeJ_G0015189.1 mouse_genomes_project 2 71196559 71198241 + Gm13663 processed_transcript processed_transcript MGP_C3HHeJ_T0007239.1 MGP_C3HHeJ_G0005930.1 mouse_genomes_project 2 128532760 128564465 - Gm26697 lincRNA lincRNA MGP_C3HHeJ_T0056572.1 MGP_C3HHeJ_G0026063.1 mouse_genomes_project 2 120897796 121009752 - MGP_C3HHeJ_P0056572 Ino80 protein_coding protein_coding MGP_C3HHeJ_T0056573.1 MGP_C3HHeJ_G0026063.1 mouse_genomes_project 2 120926543 121009678 - MGP_C3HHeJ_P0056573 Ino80 protein_coding protein_coding MGP_C3HHeJ_T0056574.1 MGP_C3HHeJ_G0026063.1 mouse_genomes_project 2 120959125 120965520 - Ino80 protein_coding retained_intron MGP_C3HHeJ_T0007260.1 MGP_C3HHeJ_G0005948.1 mouse_genomes_project 2 141055983 141115241 + Gm14061 lincRNA lincRNA MGP_C3HHeJ_T0007115.1 MGP_C3HHeJ_G0005829.1 mouse_genomes_project 2 49245586 49249931 + Gm13485 lincRNA lincRNA MGP_C3HHeJ_T0058486.1 MGP_C3HHeJ_G0026491.1 mouse_genomes_project 2 160390359 160454469 - MGP_C3HHeJ_P0058486 Soga1 protein_coding protein_coding MGP_C3HHeJ_T0058487.1 MGP_C3HHeJ_G0026491.1 mouse_genomes_project 2 160395430 160402252 - Soga1 protein_coding processed_transcript MGP_C3HHeJ_T0058488.1 MGP_C3HHeJ_G0026491.1 mouse_genomes_project 2 160412369 160415545 - Soga1 protein_coding processed_transcript MGP_C3HHeJ_T0052146.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3586943 4485222 - MGP_C3HHeJ_P0052146 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052147.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3586954 3781097 - MGP_C3HHeJ_P0052147 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052148.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3586954 3949050 - MGP_C3HHeJ_P0052148 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052149.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3586954 3949050 - MGP_C3HHeJ_P0052149 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052150.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3589134 3949050 - MGP_C3HHeJ_P0052150 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052151.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3590740 4153349 - MGP_C3HHeJ_P0052151 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052152.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3592118 3949001 - MGP_C3HHeJ_P0052152 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052153.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3592152 4153289 - MGP_C3HHeJ_P0052153 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052154.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3592152 3781097 - MGP_C3HHeJ_P0052154 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052155.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3592946 3781410 - MGP_C3HHeJ_P0052155 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052156.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3593551 3781095 - MGP_C3HHeJ_P0052156 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052157.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3593551 3781095 - MGP_C3HHeJ_P0052157 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052158.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3593686 3949000 - MGP_C3HHeJ_P0052158 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052159.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3594229 3936652 - MGP_C3HHeJ_P0052159 Celf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052160.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3594242 3643361 - Celf2 protein_coding processed_transcript MGP_C3HHeJ_T0052161.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3601259 4485115 - MGP_C3HHeJ_P0052161 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052162.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3633786 3781097 - Celf2 protein_coding retained_intron MGP_C3HHeJ_T0052163.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3654792 3667609 - Celf2 protein_coding processed_transcript MGP_C3HHeJ_T0052164.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3658386 3948682 - Celf2 protein_coding processed_transcript MGP_C3HHeJ_T0052165.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3667157 4485420 - MGP_C3HHeJ_P0052165 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052166.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3671667 3948946 - Celf2 protein_coding retained_intron MGP_C3HHeJ_T0052167.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3674956 3781698 - Celf2 protein_coding retained_intron MGP_C3HHeJ_T0052168.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3676132 3936027 - MGP_C3HHeJ_P0052168 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052169.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3715071 3948946 - Celf2 protein_coding retained_intron MGP_C3HHeJ_T0052170.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3718781 4153254 - MGP_C3HHeJ_P0052170 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052171.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3780937 3781691 - MGP_C3HHeJ_P0052171 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052172.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 4148143 4153360 - Celf2 protein_coding processed_transcript MGP_C3HHeJ_T0052173.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 4483297 4583132 - Celf2 protein_coding processed_transcript MGP_C3HHeJ_T0057932.1 MGP_C3HHeJ_G0026369.1 mouse_genomes_project 2 155165026 155168841 + Srxn1 protein_coding processed_transcript MGP_C3HHeJ_T0057933.1 MGP_C3HHeJ_G0026369.1 mouse_genomes_project 2 155165026 155168730 + Srxn1 protein_coding processed_transcript MGP_C3HHeJ_T0057934.1 MGP_C3HHeJ_G0026369.1 mouse_genomes_project 2 155165034 155170895 + MGP_C3HHeJ_P0057934 Srxn1 protein_coding protein_coding MGP_C3HHeJ_T0055614.1 MGP_C3HHeJ_G0025837.1 mouse_genomes_project 2 90078050 90078956 - MGP_C3HHeJ_P0055614 Olfr48 protein_coding protein_coding MGP_C3HHeJ_T0056708.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122113969 122147991 - MGP_C3HHeJ_P0056708 Zfp106 protein_coding protein_coding MGP_C3HHeJ_T0056709.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122114443 122174352 - MGP_C3HHeJ_P0056709 Zfp106 protein_coding unknown_likely_coding MGP_C3HHeJ_T0056710.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122114686 122121354 - Zfp106 protein_coding retained_intron MGP_C3HHeJ_T0056711.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122127373 122129132 - Zfp106 protein_coding retained_intron MGP_C3HHeJ_T0056712.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122131300 122133227 - MGP_C3HHeJ_P0056712 Zfp106 protein_coding protein_coding MGP_C3HHeJ_T0056713.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122134877 122174399 - Zfp106 protein_coding retained_intron MGP_C3HHeJ_T0056714.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122135340 122137140 - Zfp106 protein_coding retained_intron MGP_C3HHeJ_T0056715.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122136964 122140680 - MGP_C3HHeJ_P0056715 Zfp106 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056716.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122140507 122174428 - MGP_C3HHeJ_P0056716 Zfp106 protein_coding protein_coding MGP_C3HHeJ_T0056717.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122143732 122163635 - MGP_C3HHeJ_P0056717 Zfp106 protein_coding protein_coding MGP_C3HHeJ_T0056718.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122143865 122174419 - Zfp106 protein_coding processed_transcript MGP_C3HHeJ_T0055317.1 MGP_C3HHeJ_G0025631.1 mouse_genomes_project 2 84340455 84420579 - MGP_C3HHeJ_P0055317 protein_coding protein_coding MGP_C3HHeJ_T0054181.1 MGP_C3HHeJ_G0025409.1 mouse_genomes_project 2 35092091 35093033 - MGP_C3HHeJ_P0054181 Olfr3 protein_coding protein_coding MGP_C3HHeJ_T0101883.1 MGP_C3HHeJ_G0039848.1 mouse_genomes_project 2 35402772 35403026 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0056968.1 MGP_C3HHeJ_G0026134.1 mouse_genomes_project 2 124212592 124251000 + protein_coding retained_intron MGP_C3HHeJ_T0058150.1 MGP_C3HHeJ_G0026436.1 mouse_genomes_project 2 157762462 157763963 + MGP_C3HHeJ_P0058150 Actl10 protein_coding protein_coding MGP_C3HHeJ_T0056476.1 MGP_C3HHeJ_G0026038.1 mouse_genomes_project 2 120162183 120198006 + MGP_C3HHeJ_P0056476 Pak6 protein_coding protein_coding MGP_C3HHeJ_T0056477.1 MGP_C3HHeJ_G0026038.1 mouse_genomes_project 2 120162642 120163834 + Pak6 protein_coding retained_intron MGP_C3HHeJ_T0056478.1 MGP_C3HHeJ_G0026038.1 mouse_genomes_project 2 120162944 120176533 + Pak6 protein_coding processed_transcript MGP_C3HHeJ_T0056479.1 MGP_C3HHeJ_G0026038.1 mouse_genomes_project 2 120175991 120198004 + MGP_C3HHeJ_P0056479 Pak6 protein_coding protein_coding MGP_C3HHeJ_T0056480.1 MGP_C3HHeJ_G0026038.1 mouse_genomes_project 2 120176025 120197213 + Pak6 protein_coding retained_intron MGP_C3HHeJ_T0058565.1 MGP_C3HHeJ_G0026506.1 mouse_genomes_project 2 161563885 161595698 - MGP_C3HHeJ_P0058565 Tgm2 protein_coding protein_coding MGP_C3HHeJ_T0058566.1 MGP_C3HHeJ_G0026506.1 mouse_genomes_project 2 161575770 161595655 - MGP_C3HHeJ_P0058566 Tgm2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058567.1 MGP_C3HHeJ_G0026506.1 mouse_genomes_project 2 161578806 161595628 - Tgm2 protein_coding retained_intron MGP_C3HHeJ_T0058568.1 MGP_C3HHeJ_G0026506.1 mouse_genomes_project 2 161582748 161588162 - Tgm2 protein_coding processed_transcript MGP_C3HHeJ_T0052342.1 MGP_C3HHeJ_G0025091.1 mouse_genomes_project 2 11004604 11148920 - MGP_C3HHeJ_P0052342 St8sia6 protein_coding protein_coding MGP_C3HHeJ_T0052343.1 MGP_C3HHeJ_G0025091.1 mouse_genomes_project 2 11010737 11148149 - St8sia6 protein_coding processed_transcript MGP_C3HHeJ_T0057264.1 MGP_C3HHeJ_G0026208.1 mouse_genomes_project 2 131595983 131674091 - MGP_C3HHeJ_P0057264 F830045P16Rik protein_coding protein_coding MGP_C3HHeJ_T0055593.1 MGP_C3HHeJ_G0025823.1 mouse_genomes_project 2 89600272 89601217 - MGP_C3HHeJ_P0055593 Olfr1240 protein_coding protein_coding MGP_C3HHeJ_T0058614.1 MGP_C3HHeJ_G0026518.1 mouse_genomes_project 2 162291799 162357965 + MGP_C3HHeJ_P0058614 Dhx35 protein_coding protein_coding MGP_C3HHeJ_T0058615.1 MGP_C3HHeJ_G0026518.1 mouse_genomes_project 2 162291799 162357965 + MGP_C3HHeJ_P0058615 Dhx35 protein_coding protein_coding MGP_C3HHeJ_T0058616.1 MGP_C3HHeJ_G0026518.1 mouse_genomes_project 2 162291854 162357965 + Dhx35 protein_coding processed_transcript MGP_C3HHeJ_T0058617.1 MGP_C3HHeJ_G0026518.1 mouse_genomes_project 2 162291857 162345032 + Dhx35 protein_coding retained_intron MGP_C3HHeJ_T0058618.1 MGP_C3HHeJ_G0026518.1 mouse_genomes_project 2 162291877 162327696 + MGP_C3HHeJ_P0058618 Dhx35 protein_coding protein_coding MGP_C3HHeJ_T0058619.1 MGP_C3HHeJ_G0026518.1 mouse_genomes_project 2 162291883 162316516 + Dhx35 protein_coding processed_transcript MGP_C3HHeJ_T0058620.1 MGP_C3HHeJ_G0026518.1 mouse_genomes_project 2 162292915 162298505 + Dhx35 protein_coding processed_transcript MGP_C3HHeJ_T0058621.1 MGP_C3HHeJ_G0026518.1 mouse_genomes_project 2 162325527 162333058 + Dhx35 protein_coding processed_transcript MGP_C3HHeJ_T0058622.1 MGP_C3HHeJ_G0026518.1 mouse_genomes_project 2 162348708 162357119 + Dhx35 protein_coding processed_transcript MGP_C3HHeJ_T0056994.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126015278 126072901 + Sema6d protein_coding retained_intron MGP_C3HHeJ_T0056995.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126015278 126607143 + MGP_C3HHeJ_P0056995 Sema6d protein_coding protein_coding MGP_C3HHeJ_T0056996.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126072552 126440593 + Sema6d protein_coding processed_transcript MGP_C3HHeJ_T0056997.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126546842 126601263 + Sema6d protein_coding retained_intron MGP_C3HHeJ_T0056998.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126547032 126605600 + MGP_C3HHeJ_P0056998 Sema6d protein_coding protein_coding MGP_C3HHeJ_T0056999.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126547032 126605600 + MGP_C3HHeJ_P0056999 Sema6d protein_coding protein_coding MGP_C3HHeJ_T0057000.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126547032 126604329 + MGP_C3HHeJ_P0057000 Sema6d protein_coding protein_coding MGP_C3HHeJ_T0057001.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126547032 126605600 + MGP_C3HHeJ_P0057001 Sema6d protein_coding protein_coding MGP_C3HHeJ_T0057002.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126547309 126605597 + MGP_C3HHeJ_P0057002 Sema6d protein_coding protein_coding MGP_C3HHeJ_T0057003.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126547337 126604329 + MGP_C3HHeJ_P0057003 Sema6d protein_coding protein_coding MGP_C3HHeJ_T0057004.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126592017 126603687 + MGP_C3HHeJ_P0057004 Sema6d protein_coding protein_coding MGP_C3HHeJ_T0054882.1 MGP_C3HHeJ_G0025544.1 mouse_genomes_project 2 69881804 69913823 + MGP_C3HHeJ_P0054882 Erich2 protein_coding protein_coding MGP_C3HHeJ_T0054883.1 MGP_C3HHeJ_G0025544.1 mouse_genomes_project 2 69881816 69913823 + MGP_C3HHeJ_P0054883 Erich2 protein_coding protein_coding MGP_C3HHeJ_T0054884.1 MGP_C3HHeJ_G0025544.1 mouse_genomes_project 2 69882445 69910257 + Erich2 protein_coding retained_intron MGP_C3HHeJ_T0054885.1 MGP_C3HHeJ_G0025544.1 mouse_genomes_project 2 69882445 69896852 + Erich2 protein_coding retained_intron MGP_C3HHeJ_T0054886.1 MGP_C3HHeJ_G0025544.1 mouse_genomes_project 2 69882482 69900662 + MGP_C3HHeJ_P0054886 Erich2 protein_coding protein_coding MGP_C3HHeJ_T0100509.1 MGP_C3HHeJ_G0038703.1 mouse_genomes_project 2 164575854 164575979 + Gm25561 snoRNA snoRNA MGP_C3HHeJ_T0013425.1 MGP_C3HHeJ_G0011529.1 mouse_genomes_project 2 59570901 59571148 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056321.1 MGP_C3HHeJ_G0025981.1 mouse_genomes_project 2 112554950 112555889 + MGP_C3HHeJ_P0056321 Olfr1288 protein_coding protein_coding MGP_C3HHeJ_T0055626.1 MGP_C3HHeJ_G0025843.1 mouse_genomes_project 2 90252819 90253643 + MGP_C3HHeJ_P0055626 Olfr1261 protein_coding protein_coding MGP_C3HHeJ_T0003867.1 MGP_C3HHeJ_G0003451.1 mouse_genomes_project 2 27777872 27779467 - 2600006K01Rik antisense antisense MGP_C3HHeJ_T0057828.1 MGP_C3HHeJ_G0026341.1 mouse_genomes_project 2 152713080 152787011 + MGP_C3HHeJ_P0057828 Syndig1 protein_coding protein_coding MGP_C3HHeJ_T0057830.1 MGP_C3HHeJ_G0026341.1 mouse_genomes_project 2 152714657 152893170 + MGP_C3HHeJ_P0057830 Syndig1 protein_coding protein_coding MGP_C3HHeJ_T0057831.1 MGP_C3HHeJ_G0026341.1 mouse_genomes_project 2 152714738 152787052 + MGP_C3HHeJ_P0057831 Syndig1 protein_coding protein_coding MGP_C3HHeJ_T0057832.1 MGP_C3HHeJ_G0026341.1 mouse_genomes_project 2 152714770 152787048 + MGP_C3HHeJ_P0057832 Syndig1 protein_coding protein_coding MGP_C3HHeJ_T0057833.1 MGP_C3HHeJ_G0026341.1 mouse_genomes_project 2 152714791 152787178 + MGP_C3HHeJ_P0057833 Syndig1 protein_coding protein_coding MGP_C3HHeJ_T0057834.1 MGP_C3HHeJ_G0026341.1 mouse_genomes_project 2 152783537 152893170 + MGP_C3HHeJ_P0057834 Syndig1 protein_coding protein_coding MGP_C3HHeJ_T0057359.1 MGP_C3HHeJ_G0026233.1 mouse_genomes_project 2 132854771 132868734 + MGP_C3HHeJ_P0057359 Itpa protein_coding protein_coding MGP_C3HHeJ_T0057360.1 MGP_C3HHeJ_G0026233.1 mouse_genomes_project 2 132854966 132863135 + Itpa protein_coding retained_intron MGP_C3HHeJ_T0057361.1 MGP_C3HHeJ_G0026233.1 mouse_genomes_project 2 132854969 132862842 + Itpa protein_coding processed_transcript MGP_C3HHeJ_T0057362.1 MGP_C3HHeJ_G0026233.1 mouse_genomes_project 2 132854987 132859265 + Itpa protein_coding retained_intron MGP_C3HHeJ_T0057363.1 MGP_C3HHeJ_G0026233.1 mouse_genomes_project 2 132855026 132868152 + Itpa protein_coding processed_transcript MGP_C3HHeJ_T0013478.1 MGP_C3HHeJ_G0011582.1 mouse_genomes_project 2 80286111 80286796 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007155.1 MGP_C3HHeJ_G0005862.1 mouse_genomes_project 2 74279200 74280261 + Gm14424 lincRNA lincRNA MGP_C3HHeJ_T0057213.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130717974 130801055 - MGP_C3HHeJ_P0057213 Anapc1 protein_coding protein_coding MGP_C3HHeJ_T0057214.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130723277 130726035 - Anapc1 protein_coding processed_transcript MGP_C3HHeJ_T0057215.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130725465 130730737 - Anapc1 protein_coding processed_transcript MGP_C3HHeJ_T0057216.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130730266 130735355 - Anapc1 protein_coding processed_transcript MGP_C3HHeJ_T0057217.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130731631 130736534 - Anapc1 protein_coding processed_transcript MGP_C3HHeJ_T0057218.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130736437 130737932 - Anapc1 protein_coding processed_transcript MGP_C3HHeJ_T0057219.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130752178 130801040 - MGP_C3HHeJ_P0057219 Anapc1 protein_coding protein_coding MGP_C3HHeJ_T0057220.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130769030 130774459 - Anapc1 protein_coding processed_transcript MGP_C3HHeJ_T0057221.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130770876 130775307 - Anapc1 protein_coding processed_transcript MGP_C3HHeJ_T0057222.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130791098 130801039 - Anapc1 protein_coding processed_transcript MGP_C3HHeJ_T0057223.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130798716 130801018 - MGP_C3HHeJ_P0057223 Anapc1 protein_coding protein_coding MGP_C3HHeJ_T0053336.1 MGP_C3HHeJ_G0025275.1 mouse_genomes_project 2 27658354 27662482 + Gm13547 protein_coding processed_transcript MGP_C3HHeJ_T0053338.1 MGP_C3HHeJ_G0025275.1 mouse_genomes_project 2 27660570 27663132 + MGP_C3HHeJ_P0053338 Gm13547 protein_coding protein_coding MGP_C3HHeJ_T0053339.1 MGP_C3HHeJ_G0025275.1 mouse_genomes_project 2 27660603 27663010 + MGP_C3HHeJ_P0053339 Gm13547 protein_coding protein_coding MGP_C3HHeJ_T0055464.1 MGP_C3HHeJ_G0025713.1 mouse_genomes_project 2 86872868 86874994 - MGP_C3HHeJ_P0055464 protein_coding protein_coding MGP_C3HHeJ_T0010399.1 MGP_C3HHeJ_G0008532.1 mouse_genomes_project 2 172638704 172638768 - Mir7004 miRNA miRNA MGP_C3HHeJ_T0013587.1 MGP_C3HHeJ_G0011691.1 mouse_genomes_project 2 120519229 120519498 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013501.1 MGP_C3HHeJ_G0011605.1 mouse_genomes_project 2 87315193 87315728 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056347.1 MGP_C3HHeJ_G0026004.1 mouse_genomes_project 2 113475585 113487733 - MGP_C3HHeJ_P0056347 Nutm1 protein_coding protein_coding MGP_C3HHeJ_T0053705.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30029289 30110982 + MGP_C3HHeJ_P0053705 Nup214 protein_coding protein_coding MGP_C3HHeJ_T0053706.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30029339 30034774 + Nup214 protein_coding retained_intron MGP_C3HHeJ_T0053707.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30034589 30046179 + Nup214 protein_coding processed_transcript MGP_C3HHeJ_T0053708.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30049609 30053486 + Nup214 protein_coding processed_transcript MGP_C3HHeJ_T0053709.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30052749 30058635 + MGP_C3HHeJ_P0053709 Nup214 protein_coding protein_coding MGP_C3HHeJ_T0053710.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30067689 30069063 + Nup214 protein_coding processed_transcript MGP_C3HHeJ_T0053711.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30083742 30090369 + Nup214 protein_coding processed_transcript MGP_C3HHeJ_T0053712.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30092622 30113053 + MGP_C3HHeJ_P0053712 Nup214 protein_coding protein_coding MGP_C3HHeJ_T0053713.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30101164 30110978 + MGP_C3HHeJ_P0053713 Nup214 protein_coding protein_coding MGP_C3HHeJ_T0053715.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30109605 30111465 + Nup214 protein_coding retained_intron MGP_C3HHeJ_T0053716.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30110302 30110976 + Nup214 protein_coding retained_intron MGP_C3HHeJ_T0055305.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339092 84392830 - MGP_C3HHeJ_P0055305 protein_coding protein_coding MGP_C3HHeJ_T0055306.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339092 84392830 - MGP_C3HHeJ_P0055306 protein_coding protein_coding MGP_C3HHeJ_T0055307.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339092 84392830 - MGP_C3HHeJ_P0055307 protein_coding protein_coding MGP_C3HHeJ_T0055308.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339092 84392830 - MGP_C3HHeJ_P0055308 protein_coding protein_coding MGP_C3HHeJ_T0055309.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339092 84392830 - MGP_C3HHeJ_P0055309 protein_coding protein_coding MGP_C3HHeJ_T0055310.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339094 84392830 - MGP_C3HHeJ_P0055310 protein_coding protein_coding MGP_C3HHeJ_T0055311.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339094 84392830 - MGP_C3HHeJ_P0055311 protein_coding protein_coding MGP_C3HHeJ_T0055312.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339094 84392830 - MGP_C3HHeJ_P0055312 protein_coding protein_coding MGP_C3HHeJ_T0055313.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339802 84392825 - MGP_C3HHeJ_P0055313 protein_coding protein_coding MGP_C3HHeJ_T0055314.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339804 84392627 - protein_coding processed_transcript MGP_C3HHeJ_T0055315.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339804 84392597 - MGP_C3HHeJ_P0055315 protein_coding protein_coding MGP_C3HHeJ_T0055316.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339804 84391590 - MGP_C3HHeJ_P0055316 protein_coding protein_coding MGP_C3HHeJ_T0055318.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84341549 84348676 - protein_coding processed_transcript MGP_C3HHeJ_T0055319.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84341645 84348696 - protein_coding processed_transcript MGP_C3HHeJ_T0055320.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84341908 84392839 - MGP_C3HHeJ_P0055320 protein_coding protein_coding MGP_C3HHeJ_T0055321.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84347985 84351605 - protein_coding processed_transcript MGP_C3HHeJ_T0055322.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84363409 84377981 - protein_coding processed_transcript MGP_C3HHeJ_T0055323.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84363448 84390647 - protein_coding processed_transcript MGP_C3HHeJ_T0055403.1 MGP_C3HHeJ_G0025654.1 mouse_genomes_project 2 85124480 85125555 - MGP_C3HHeJ_P0055403 protein_coding protein_coding MGP_C3HHeJ_T0003872.1 MGP_C3HHeJ_G0003455.1 mouse_genomes_project 2 29216526 29218404 - Gm13405 antisense antisense MGP_C3HHeJ_T0053870.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30786292 30798951 - MGP_C3HHeJ_P0053870 Fpgs protein_coding protein_coding MGP_C3HHeJ_T0053871.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30786293 30798901 - Fpgs protein_coding retained_intron MGP_C3HHeJ_T0053872.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30786500 30789640 - Fpgs protein_coding retained_intron MGP_C3HHeJ_T0053873.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30786985 30788688 - Fpgs protein_coding processed_transcript MGP_C3HHeJ_T0053874.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30790185 30791186 - Fpgs protein_coding retained_intron MGP_C3HHeJ_T0053875.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30790532 30808708 - MGP_C3HHeJ_P0053875 Fpgs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053876.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30790697 30791521 - Fpgs protein_coding retained_intron MGP_C3HHeJ_T0053877.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30791099 30808716 - MGP_C3HHeJ_P0053877 Fpgs protein_coding protein_coding MGP_C3HHeJ_T0053878.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30797216 30798010 - Fpgs protein_coding retained_intron MGP_C3HHeJ_T0053879.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30797478 30808602 - MGP_C3HHeJ_P0053879 Fpgs protein_coding protein_coding MGP_C3HHeJ_T0003948.1 MGP_C3HHeJ_G0003512.1 mouse_genomes_project 2 74225603 74234610 - Hoxd3os1 antisense antisense MGP_C3HHeJ_T0003949.1 MGP_C3HHeJ_G0003512.1 mouse_genomes_project 2 74232425 74235082 - Hoxd3os1 antisense antisense MGP_C3HHeJ_T0003950.1 MGP_C3HHeJ_G0003512.1 mouse_genomes_project 2 74232575 74238548 - Hoxd3os1 antisense antisense MGP_C3HHeJ_T0003951.1 MGP_C3HHeJ_G0003512.1 mouse_genomes_project 2 74235681 74238682 - Hoxd3os1 antisense antisense MGP_C3HHeJ_T0055468.1 MGP_C3HHeJ_G0025716.1 mouse_genomes_project 2 86961669 86962635 - MGP_C3HHeJ_P0055468 Olfr1100 protein_coding protein_coding MGP_C3HHeJ_T0017509.1 MGP_C3HHeJ_G0015156.1 mouse_genomes_project 2 10605637 10662517 + Gm13270 processed_transcript antisense MGP_C3HHeJ_T0017510.1 MGP_C3HHeJ_G0015156.1 mouse_genomes_project 2 10605638 10608437 + Gm13270 processed_transcript retained_intron MGP_C3HHeJ_T0059143.1 MGP_C3HHeJ_G0026647.1 mouse_genomes_project 2 172762675 172783430 - MGP_C3HHeJ_P0059143 Sall4 protein_coding protein_coding MGP_C3HHeJ_T0059144.1 MGP_C3HHeJ_G0026647.1 mouse_genomes_project 2 172762675 172783430 - MGP_C3HHeJ_P0059144 Sall4 protein_coding protein_coding MGP_C3HHeJ_T0059145.1 MGP_C3HHeJ_G0026647.1 mouse_genomes_project 2 172762675 172783258 - MGP_C3HHeJ_P0059145 Sall4 protein_coding protein_coding MGP_C3HHeJ_T0059146.1 MGP_C3HHeJ_G0026647.1 mouse_genomes_project 2 172769244 172770273 - MGP_C3HHeJ_P0059146 Sall4 protein_coding protein_coding MGP_C3HHeJ_T0059147.1 MGP_C3HHeJ_G0026647.1 mouse_genomes_project 2 172770510 172781475 - MGP_C3HHeJ_P0059147 Sall4 protein_coding protein_coding MGP_C3HHeJ_T0059148.1 MGP_C3HHeJ_G0026647.1 mouse_genomes_project 2 172770943 172784172 - Sall4 protein_coding processed_transcript MGP_C3HHeJ_T0059149.1 MGP_C3HHeJ_G0026647.1 mouse_genomes_project 2 172771082 172783346 - Sall4 protein_coding processed_transcript MGP_C3HHeJ_T0007173.1 MGP_C3HHeJ_G0005878.1 mouse_genomes_project 2 91584061 91585268 + A330069E16Rik lincRNA lincRNA MGP_C3HHeJ_T0055605.1 MGP_C3HHeJ_G0025830.1 mouse_genomes_project 2 89954456 89955441 - MGP_C3HHeJ_P0055605 protein_coding protein_coding MGP_C3HHeJ_T0058536.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160978181 160980603 + MGP_C3HHeJ_P0058536 Nnat protein_coding protein_coding MGP_C3HHeJ_T0058537.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160978210 160980337 + MGP_C3HHeJ_P0058537 Nnat protein_coding protein_coding MGP_C3HHeJ_T0058538.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160978213 160980621 + MGP_C3HHeJ_P0058538 Nnat protein_coding protein_coding MGP_C3HHeJ_T0058539.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160978219 160980603 + MGP_C3HHeJ_P0058539 Nnat protein_coding protein_coding MGP_C3HHeJ_T0058540.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160978224 160980091 + MGP_C3HHeJ_P0058540 Nnat protein_coding protein_coding MGP_C3HHeJ_T0058541.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160978226 160979471 + MGP_C3HHeJ_P0058541 Nnat protein_coding protein_coding MGP_C3HHeJ_T0058542.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160978227 160979881 + MGP_C3HHeJ_P0058542 Nnat protein_coding protein_coding MGP_C3HHeJ_T0058543.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160978233 160979879 + MGP_C3HHeJ_P0058543 Nnat protein_coding protein_coding MGP_C3HHeJ_T0058544.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160978243 160980616 + Nnat protein_coding retained_intron MGP_C3HHeJ_T0058545.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160979107 160979954 + Nnat protein_coding retained_intron MGP_C3HHeJ_T0059363.1 MGP_C3HHeJ_G0026708.1 mouse_genomes_project 2 184828533 184840772 - MGP_C3HHeJ_P0059363 Rbbp8nl protein_coding protein_coding MGP_C3HHeJ_T0013281.1 MGP_C3HHeJ_G0011385.1 mouse_genomes_project 2 8321831 8322765 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053889.1 MGP_C3HHeJ_G0025353.1 mouse_genomes_project 2 30831574 30868599 + MGP_C3HHeJ_P0053889 Sh2d3c protein_coding protein_coding MGP_C3HHeJ_T0053890.1 MGP_C3HHeJ_G0025353.1 mouse_genomes_project 2 30840792 30857665 + Sh2d3c protein_coding processed_transcript MGP_C3HHeJ_T0053891.1 MGP_C3HHeJ_G0025353.1 mouse_genomes_project 2 30840792 30869117 + MGP_C3HHeJ_P0053891 Sh2d3c protein_coding protein_coding MGP_C3HHeJ_T0053894.1 MGP_C3HHeJ_G0025353.1 mouse_genomes_project 2 30848371 30854142 + Sh2d3c protein_coding processed_transcript MGP_C3HHeJ_T0053895.1 MGP_C3HHeJ_G0025353.1 mouse_genomes_project 2 30854310 30859885 + Sh2d3c protein_coding processed_transcript MGP_C3HHeJ_T0053896.1 MGP_C3HHeJ_G0025353.1 mouse_genomes_project 2 30854312 30856497 + Sh2d3c protein_coding processed_transcript MGP_C3HHeJ_T0053897.1 MGP_C3HHeJ_G0025353.1 mouse_genomes_project 2 30854376 30868607 + MGP_C3HHeJ_P0053897 Sh2d3c protein_coding unknown_likely_coding MGP_C3HHeJ_T0055265.1 MGP_C3HHeJ_G0025621.1 mouse_genomes_project 2 81850468 82063536 + MGP_C3HHeJ_P0055265 Zfp804a protein_coding protein_coding MGP_C3HHeJ_T0055266.1 MGP_C3HHeJ_G0025621.1 mouse_genomes_project 2 82037077 82060985 + Zfp804a protein_coding processed_transcript MGP_C3HHeJ_T0013545.1 MGP_C3HHeJ_G0011649.1 mouse_genomes_project 2 103957268 103957695 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059247.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178612041 178668672 + MGP_C3HHeJ_P0059247 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059248.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178612041 178625156 + MGP_C3HHeJ_P0059248 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059249.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178613079 178668672 + MGP_C3HHeJ_P0059249 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059250.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178626119 178677090 + Gnas protein_coding processed_transcript MGP_C3HHeJ_T0059251.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178626119 178677332 + MGP_C3HHeJ_P0059251 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059252.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178626119 178630279 + MGP_C3HHeJ_P0059252 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059253.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178626119 178677090 + MGP_C3HHeJ_P0059253 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059254.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178626119 178677300 + MGP_C3HHeJ_P0059254 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059255.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178657130 178675829 + Gnas protein_coding processed_transcript MGP_C3HHeJ_T0059256.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178657259 178677090 + Gnas protein_coding processed_transcript MGP_C3HHeJ_T0059257.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178657290 178658508 + Gnas protein_coding processed_transcript MGP_C3HHeJ_T0059258.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178657317 178668672 + Gnas protein_coding processed_transcript MGP_C3HHeJ_T0059259.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178657583 178675867 + Gnas protein_coding processed_transcript MGP_C3HHeJ_T0059260.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178659566 178677332 + MGP_C3HHeJ_P0059260 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059261.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178659657 178677332 + MGP_C3HHeJ_P0059261 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059262.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178659847 178668672 + MGP_C3HHeJ_P0059262 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059263.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178659856 178677336 + MGP_C3HHeJ_P0059263 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059265.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178672291 178675997 + Gnas protein_coding retained_intron MGP_C3HHeJ_T0059266.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178675237 178676316 + Gnas protein_coding retained_intron MGP_C3HHeJ_T0000314.1 MGP_C3HHeJ_G0000264.1 mouse_genomes_project 2 20078985 20079054 + mt-Ts1 Mt_tRNA Mt_tRNA MGP_C3HHeJ_T0004084.1 MGP_C3HHeJ_G0003608.1 mouse_genomes_project 2 167376721 167384021 - Gm16316 antisense antisense MGP_C3HHeJ_T0059182.1 MGP_C3HHeJ_G0026660.1 mouse_genomes_project 2 176566905 176581220 - MGP_C3HHeJ_P0059182 Aurka protein_coding unknown_likely_coding MGP_C3HHeJ_T0059183.1 MGP_C3HHeJ_G0026660.1 mouse_genomes_project 2 176567676 176573640 - Aurka protein_coding retained_intron MGP_C3HHeJ_T0059184.1 MGP_C3HHeJ_G0026660.1 mouse_genomes_project 2 176577057 176581028 - Aurka protein_coding retained_intron MGP_C3HHeJ_T0056840.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122947263 122992182 - MGP_C3HHeJ_P0056840 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0056841.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122947263 122987859 - MGP_C3HHeJ_P0056841 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0056842.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122947263 122992185 - MGP_C3HHeJ_P0056842 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0056843.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122947593 122987827 - MGP_C3HHeJ_P0056843 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0056844.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122947599 122992248 - MGP_C3HHeJ_P0056844 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0056845.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122959144 122974228 - MGP_C3HHeJ_P0056845 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0056846.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122959179 122971811 - MGP_C3HHeJ_P0056846 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0056847.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122959257 122973798 - MGP_C3HHeJ_P0056847 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0056848.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122965124 122974224 - MGP_C3HHeJ_P0056848 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0056849.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122965905 122974088 - Ppip5k1 protein_coding retained_intron MGP_C3HHeJ_T0056850.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122969431 122991929 - Ppip5k1 protein_coding retained_intron MGP_C3HHeJ_T0056851.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122971551 122979048 - Ppip5k1 protein_coding retained_intron MGP_C3HHeJ_T0056852.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122977430 122992163 - Ppip5k1 protein_coding retained_intron MGP_C3HHeJ_T0056853.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122980598 122985633 - MGP_C3HHeJ_P0056853 Ppip5k1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056854.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122983455 122992182 - Ppip5k1 protein_coding retained_intron MGP_C3HHeJ_T0056855.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122983869 122991927 - Ppip5k1 protein_coding retained_intron MGP_C3HHeJ_T0056856.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122985033 122991924 - Ppip5k1 protein_coding retained_intron MGP_C3HHeJ_T0056857.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122987318 122992136 - MGP_C3HHeJ_P0056857 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0053303.1 MGP_C3HHeJ_G0025271.1 mouse_genomes_project 2 26982533 26989457 + MGP_C3HHeJ_P0053303 Setx protein_coding protein_coding MGP_C3HHeJ_T0053304.1 MGP_C3HHeJ_G0025271.1 mouse_genomes_project 2 26983344 27047909 + MGP_C3HHeJ_P0053304 Setx protein_coding protein_coding MGP_C3HHeJ_T0053305.1 MGP_C3HHeJ_G0025271.1 mouse_genomes_project 2 26984238 26989661 + Setx protein_coding retained_intron MGP_C3HHeJ_T0053306.1 MGP_C3HHeJ_G0025271.1 mouse_genomes_project 2 27019560 27025110 + Setx protein_coding processed_transcript MGP_C3HHeJ_T0053307.1 MGP_C3HHeJ_G0025271.1 mouse_genomes_project 2 27026805 27043879 + MGP_C3HHeJ_P0053307 Setx protein_coding protein_coding MGP_C3HHeJ_T0055467.1 MGP_C3HHeJ_G0025715.1 mouse_genomes_project 2 86941088 86942027 - MGP_C3HHeJ_P0055467 Olfr1099 protein_coding protein_coding MGP_C3HHeJ_T0017575.1 MGP_C3HHeJ_G0015199.1 mouse_genomes_project 2 87134359 87138943 - Gm13734 processed_transcript processed_transcript MGP_C3HHeJ_T0055349.1 MGP_C3HHeJ_G0025640.1 mouse_genomes_project 2 84511581 84523364 - MGP_C3HHeJ_P0055349 Serping1 protein_coding protein_coding MGP_C3HHeJ_T0055350.1 MGP_C3HHeJ_G0025640.1 mouse_genomes_project 2 84511700 84523404 - MGP_C3HHeJ_P0055350 Serping1 protein_coding protein_coding MGP_C3HHeJ_T0055351.1 MGP_C3HHeJ_G0025640.1 mouse_genomes_project 2 84519272 84521270 - Serping1 protein_coding processed_transcript MGP_C3HHeJ_T0013315.1 MGP_C3HHeJ_G0011419.1 mouse_genomes_project 2 20271492 20271827 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017595.1 MGP_C3HHeJ_G0015209.1 mouse_genomes_project 2 94465227 94468767 + Alkbh3os1 processed_transcript processed_transcript MGP_C3HHeJ_T0010398.1 MGP_C3HHeJ_G0008531.1 mouse_genomes_project 2 172159603 172159698 - Gm24561 miRNA miRNA MGP_C3HHeJ_T0056340.1 MGP_C3HHeJ_G0026000.1 mouse_genomes_project 2 113286181 113287120 - MGP_C3HHeJ_P0056340 Olfr1314 protein_coding protein_coding MGP_C3HHeJ_T0053009.1 MGP_C3HHeJ_G0025218.1 mouse_genomes_project 2 24089117 24096686 - MGP_C3HHeJ_P0053009 Card9 protein_coding protein_coding MGP_C3HHeJ_T0053010.1 MGP_C3HHeJ_G0025218.1 mouse_genomes_project 2 24089128 24089714 - Card9 protein_coding processed_transcript MGP_C3HHeJ_T0053011.1 MGP_C3HHeJ_G0025218.1 mouse_genomes_project 2 24089128 24097857 - MGP_C3HHeJ_P0053011 Card9 protein_coding protein_coding MGP_C3HHeJ_T0013465.1 MGP_C3HHeJ_G0011569.1 mouse_genomes_project 2 76870696 76871129 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059313.1 MGP_C3HHeJ_G0026698.1 mouse_genomes_project 2 184570765 184581240 + MGP_C3HHeJ_P0059313 Lsm14b protein_coding protein_coding MGP_C3HHeJ_T0059314.1 MGP_C3HHeJ_G0026698.1 mouse_genomes_project 2 184570964 184581247 + MGP_C3HHeJ_P0059314 Lsm14b protein_coding protein_coding MGP_C3HHeJ_T0059315.1 MGP_C3HHeJ_G0026698.1 mouse_genomes_project 2 184573687 184579590 + Lsm14b protein_coding processed_transcript MGP_C3HHeJ_T0057728.1 MGP_C3HHeJ_G0026311.1 mouse_genomes_project 2 147560036 147560796 + MGP_C3HHeJ_P0057728 Scp2d1 protein_coding protein_coding MGP_C3HHeJ_T0004068.1 MGP_C3HHeJ_G0003596.1 mouse_genomes_project 2 159692347 159693417 - Gm14170 antisense antisense MGP_C3HHeJ_T0007214.1 MGP_C3HHeJ_G0005912.1 mouse_genomes_project 2 116683273 116685858 + Gm13976 lincRNA lincRNA MGP_C3HHeJ_T0052520.1 MGP_C3HHeJ_G0025122.1 mouse_genomes_project 2 18944350 19419858 + MGP_C3HHeJ_P0052520 Gpr158 protein_coding protein_coding MGP_C3HHeJ_T0052521.1 MGP_C3HHeJ_G0025122.1 mouse_genomes_project 2 18944375 19400511 + Gpr158 protein_coding retained_intron MGP_C3HHeJ_T0059303.1 MGP_C3HHeJ_G0026696.1 mouse_genomes_project 2 183958205 184431650 + MGP_C3HHeJ_P0059303 Cdh4 protein_coding protein_coding MGP_C3HHeJ_T0059304.1 MGP_C3HHeJ_G0026696.1 mouse_genomes_project 2 183958396 184380080 + MGP_C3HHeJ_P0059304 Cdh4 protein_coding protein_coding MGP_C3HHeJ_T0059305.1 MGP_C3HHeJ_G0026696.1 mouse_genomes_project 2 183959965 184308843 + Cdh4 protein_coding processed_transcript MGP_C3HHeJ_T0059306.1 MGP_C3HHeJ_G0026696.1 mouse_genomes_project 2 184305970 184325774 + Cdh4 protein_coding processed_transcript MGP_C3HHeJ_T0059307.1 MGP_C3HHeJ_G0026696.1 mouse_genomes_project 2 184426160 184428426 + Cdh4 protein_coding retained_intron MGP_C3HHeJ_T0059308.1 MGP_C3HHeJ_G0026696.1 mouse_genomes_project 2 184426185 184426970 + MGP_C3HHeJ_P0059308 Cdh4 protein_coding protein_coding MGP_C3HHeJ_T0057150.1 MGP_C3HHeJ_G0026175.1 mouse_genomes_project 2 129416540 129418717 + MGP_C3HHeJ_P0057150 Dusp2 protein_coding protein_coding MGP_C3HHeJ_T0057151.1 MGP_C3HHeJ_G0026175.1 mouse_genomes_project 2 129416991 129417844 + Dusp2 protein_coding retained_intron MGP_C3HHeJ_T0052601.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 21980690 22007369 + MGP_C3HHeJ_P0052601 Psd4 protein_coding protein_coding MGP_C3HHeJ_T0052602.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 21980720 22028067 + MGP_C3HHeJ_P0052602 Psd4 protein_coding protein_coding MGP_C3HHeJ_T0052603.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 21998442 22021840 + MGP_C3HHeJ_P0052603 Psd4 protein_coding protein_coding MGP_C3HHeJ_T0052604.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 21998445 22007522 + MGP_C3HHeJ_P0052604 Psd4 protein_coding protein_coding MGP_C3HHeJ_T0052605.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 21998446 22010431 + Psd4 protein_coding processed_transcript MGP_C3HHeJ_T0052606.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 21998463 22007416 + MGP_C3HHeJ_P0052606 Psd4 protein_coding protein_coding MGP_C3HHeJ_T0052607.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 21999679 22007702 + MGP_C3HHeJ_P0052607 Psd4 protein_coding protein_coding MGP_C3HHeJ_T0052608.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 21999727 22021311 + MGP_C3HHeJ_P0052608 Psd4 protein_coding protein_coding MGP_C3HHeJ_T0052609.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 22014146 22016363 + MGP_C3HHeJ_P0052609 Psd4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052610.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 22018739 22020118 + Psd4 protein_coding retained_intron MGP_C3HHeJ_T0017550.1 MGP_C3HHeJ_G0015179.1 mouse_genomes_project 2 36995755 36999765 + Gm13587 processed_transcript processed_transcript MGP_C3HHeJ_T0057424.1 MGP_C3HHeJ_G0026243.1 mouse_genomes_project 2 133385085 133388801 - MGP_C3HHeJ_P0057424 Spef1 protein_coding protein_coding MGP_C3HHeJ_T0059627.1 MGP_C3HHeJ_G0026754.1 mouse_genomes_project 2 186455847 186475813 + MGP_C3HHeJ_P0059627 Pcmtd2 protein_coding protein_coding MGP_C3HHeJ_T0059628.1 MGP_C3HHeJ_G0026754.1 mouse_genomes_project 2 186455906 186475798 + MGP_C3HHeJ_P0059628 Pcmtd2 protein_coding protein_coding MGP_C3HHeJ_T0059629.1 MGP_C3HHeJ_G0026754.1 mouse_genomes_project 2 186458834 186464597 + MGP_C3HHeJ_P0059629 Pcmtd2 protein_coding protein_coding MGP_C3HHeJ_T0059630.1 MGP_C3HHeJ_G0026754.1 mouse_genomes_project 2 186460457 186464651 + Pcmtd2 protein_coding retained_intron MGP_C3HHeJ_T0059631.1 MGP_C3HHeJ_G0026754.1 mouse_genomes_project 2 186462439 186473690 + MGP_C3HHeJ_P0059631 Pcmtd2 protein_coding protein_coding MGP_C3HHeJ_T0059632.1 MGP_C3HHeJ_G0026754.1 mouse_genomes_project 2 186469307 186473954 + Pcmtd2 protein_coding processed_transcript MGP_C3HHeJ_T0059633.1 MGP_C3HHeJ_G0026754.1 mouse_genomes_project 2 186469315 186473829 + Pcmtd2 protein_coding processed_transcript MGP_C3HHeJ_T0059634.1 MGP_C3HHeJ_G0026754.1 mouse_genomes_project 2 186469349 186473607 + Pcmtd2 protein_coding processed_transcript MGP_C3HHeJ_T0059635.1 MGP_C3HHeJ_G0026754.1 mouse_genomes_project 2 186469912 186473857 + Pcmtd2 protein_coding retained_intron MGP_C3HHeJ_T0013322.1 MGP_C3HHeJ_G0011426.1 mouse_genomes_project 2 22111517 22112461 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058155.1 MGP_C3HHeJ_G0026438.1 mouse_genomes_project 2 157799961 157820273 - MGP_C3HHeJ_P0058155 Pxmp4 protein_coding protein_coding MGP_C3HHeJ_T0058156.1 MGP_C3HHeJ_G0026438.1 mouse_genomes_project 2 157809458 157820253 - MGP_C3HHeJ_P0058156 Pxmp4 protein_coding protein_coding MGP_C3HHeJ_T0057201.1 MGP_C3HHeJ_G0026190.1 mouse_genomes_project 2 130227778 130231769 + Bcl2l11 protein_coding processed_transcript MGP_C3HHeJ_T0057202.1 MGP_C3HHeJ_G0026190.1 mouse_genomes_project 2 130227778 130233248 + MGP_C3HHeJ_P0057202 Bcl2l11 protein_coding protein_coding MGP_C3HHeJ_T0057203.1 MGP_C3HHeJ_G0026190.1 mouse_genomes_project 2 130227778 130262699 + MGP_C3HHeJ_P0057203 Bcl2l11 protein_coding protein_coding MGP_C3HHeJ_T0057204.1 MGP_C3HHeJ_G0026190.1 mouse_genomes_project 2 130227779 130264286 + MGP_C3HHeJ_P0057204 Bcl2l11 protein_coding protein_coding MGP_C3HHeJ_T0057205.1 MGP_C3HHeJ_G0026190.1 mouse_genomes_project 2 130227780 130260161 + MGP_C3HHeJ_P0057205 Bcl2l11 protein_coding protein_coding MGP_C3HHeJ_T0057206.1 MGP_C3HHeJ_G0026190.1 mouse_genomes_project 2 130227790 130262966 + MGP_C3HHeJ_P0057206 Bcl2l11 protein_coding protein_coding MGP_C3HHeJ_T0057207.1 MGP_C3HHeJ_G0026190.1 mouse_genomes_project 2 130229312 130231899 + Bcl2l11 protein_coding processed_transcript MGP_C3HHeJ_T0057208.1 MGP_C3HHeJ_G0026190.1 mouse_genomes_project 2 130229868 130230476 + Bcl2l11 protein_coding processed_transcript MGP_C3HHeJ_T0058153.1 MGP_C3HHeJ_G0026437.1 mouse_genomes_project 2 157770088 157782309 - MGP_C3HHeJ_P0058153 E2f1 protein_coding protein_coding MGP_C3HHeJ_T0058154.1 MGP_C3HHeJ_G0026437.1 mouse_genomes_project 2 157770315 157782137 - MGP_C3HHeJ_P0058154 E2f1 protein_coding protein_coding MGP_C3HHeJ_T0013735.1 MGP_C3HHeJ_G0011839.1 mouse_genomes_project 2 186342703 186343605 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059298.1 MGP_C3HHeJ_G0026694.1 mouse_genomes_project 2 182916737 182929099 + MGP_C3HHeJ_P0059298 Fam217b protein_coding protein_coding MGP_C3HHeJ_T0059299.1 MGP_C3HHeJ_G0026694.1 mouse_genomes_project 2 182916795 182923761 + Fam217b protein_coding processed_transcript MGP_C3HHeJ_T0056591.1 MGP_C3HHeJ_G0026069.1 mouse_genomes_project 2 121228032 121287900 + MGP_C3HHeJ_P0056591 Rtf1 protein_coding protein_coding MGP_C3HHeJ_T0056592.1 MGP_C3HHeJ_G0026069.1 mouse_genomes_project 2 121228061 121245649 + Rtf1 protein_coding processed_transcript MGP_C3HHeJ_T0056593.1 MGP_C3HHeJ_G0026069.1 mouse_genomes_project 2 121263402 121264783 + Rtf1 protein_coding retained_intron MGP_C3HHeJ_T0056594.1 MGP_C3HHeJ_G0026069.1 mouse_genomes_project 2 121279080 121280043 + Rtf1 protein_coding retained_intron MGP_C3HHeJ_T0052729.1 MGP_C3HHeJ_G0025161.1 mouse_genomes_project 2 22877438 22882907 - MGP_C3HHeJ_P0052729 Slc34a3 protein_coding protein_coding MGP_C3HHeJ_T0052730.1 MGP_C3HHeJ_G0025161.1 mouse_genomes_project 2 22879322 22881590 - Slc34a3 protein_coding processed_transcript MGP_C3HHeJ_T0052731.1 MGP_C3HHeJ_G0025161.1 mouse_genomes_project 2 22880504 22882761 - Slc34a3 protein_coding processed_transcript MGP_C3HHeJ_T0052732.1 MGP_C3HHeJ_G0025161.1 mouse_genomes_project 2 22880545 22882754 - Slc34a3 protein_coding processed_transcript MGP_C3HHeJ_T0052733.1 MGP_C3HHeJ_G0025161.1 mouse_genomes_project 2 22880550 22882252 - Slc34a3 protein_coding processed_transcript MGP_C3HHeJ_T0052734.1 MGP_C3HHeJ_G0025161.1 mouse_genomes_project 2 22880821 22882777 - Slc34a3 protein_coding processed_transcript MGP_C3HHeJ_T0052735.1 MGP_C3HHeJ_G0025161.1 mouse_genomes_project 2 22880969 22882731 - Slc34a3 protein_coding processed_transcript MGP_C3HHeJ_T0010334.1 MGP_C3HHeJ_G0008467.1 mouse_genomes_project 2 67027813 67027911 + Mir6335 miRNA miRNA MGP_C3HHeJ_T0055506.1 MGP_C3HHeJ_G0025746.1 mouse_genomes_project 2 87747985 87751978 - MGP_C3HHeJ_P0055506 protein_coding protein_coding MGP_C3HHeJ_T0055508.1 MGP_C3HHeJ_G0025746.1 mouse_genomes_project 2 87748463 87751978 - protein_coding processed_transcript MGP_C3HHeJ_T0017607.1 MGP_C3HHeJ_G0015214.1 mouse_genomes_project 2 110627681 110628610 + Gm20638 processed_transcript processed_transcript MGP_C3HHeJ_T0099235.1 MGP_C3HHeJ_G0037429.1 mouse_genomes_project 2 186277884 186277991 + Gm25879 snRNA snRNA MGP_C3HHeJ_T0098395.1 MGP_C3HHeJ_G0036601.1 mouse_genomes_project 2 4017176 4018404 - Gm10115 sense_intronic sense_intronic MGP_C3HHeJ_T0055631.1 MGP_C3HHeJ_G0025847.1 mouse_genomes_project 2 90384907 90386064 - MGP_C3HHeJ_P0055631 Olfr32 protein_coding protein_coding MGP_C3HHeJ_T0013492.1 MGP_C3HHeJ_G0011596.1 mouse_genomes_project 2 83792890 83793261 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057914.1 MGP_C3HHeJ_G0026361.1 mouse_genomes_project 2 154682836 154707370 - MGP_C3HHeJ_P0057914 Rad21l protein_coding protein_coding MGP_C3HHeJ_T0057915.1 MGP_C3HHeJ_G0026361.1 mouse_genomes_project 2 154682836 154707370 - MGP_C3HHeJ_P0057915 Rad21l protein_coding protein_coding MGP_C3HHeJ_T0052557.1 MGP_C3HHeJ_G0025129.1 mouse_genomes_project 2 20602564 20645305 + MGP_C3HHeJ_P0052557 Acbd5 protein_coding protein_coding MGP_C3HHeJ_T0052558.1 MGP_C3HHeJ_G0025129.1 mouse_genomes_project 2 20602597 20645305 + MGP_C3HHeJ_P0052558 Acbd5 protein_coding protein_coding MGP_C3HHeJ_T0052559.1 MGP_C3HHeJ_G0025129.1 mouse_genomes_project 2 20602631 20609822 + MGP_C3HHeJ_P0052559 Acbd5 protein_coding protein_coding MGP_C3HHeJ_T0052560.1 MGP_C3HHeJ_G0025129.1 mouse_genomes_project 2 20603464 20645303 + MGP_C3HHeJ_P0052560 Acbd5 protein_coding protein_coding MGP_C3HHeJ_T0052561.1 MGP_C3HHeJ_G0025129.1 mouse_genomes_project 2 20603468 20645305 + MGP_C3HHeJ_P0052561 Acbd5 protein_coding protein_coding MGP_C3HHeJ_T0052562.1 MGP_C3HHeJ_G0025129.1 mouse_genomes_project 2 20603485 20643312 + MGP_C3HHeJ_P0052562 Acbd5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0052563.1 MGP_C3HHeJ_G0025129.1 mouse_genomes_project 2 20603723 20621817 + MGP_C3HHeJ_P0052563 Acbd5 protein_coding protein_coding MGP_C3HHeJ_T0099186.1 MGP_C3HHeJ_G0037380.1 mouse_genomes_project 2 33138720 33138824 + Gm24905 snRNA snRNA MGP_C3HHeJ_T0013264.1 MGP_C3HHeJ_G0011368.1 mouse_genomes_project 2 660616 661405 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010276.1 MGP_C3HHeJ_G0008409.1 mouse_genomes_project 2 7714444 7714542 + Mir669m-1 miRNA miRNA MGP_C3HHeJ_T0052531.1 MGP_C3HHeJ_G0025126.1 mouse_genomes_project 2 20282844 20348550 + Apbb1ip protein_coding processed_transcript MGP_C3HHeJ_T0052532.1 MGP_C3HHeJ_G0025126.1 mouse_genomes_project 2 20282844 20387792 + MGP_C3HHeJ_P0052532 Apbb1ip protein_coding protein_coding MGP_C3HHeJ_T0052533.1 MGP_C3HHeJ_G0025126.1 mouse_genomes_project 2 20283140 20364818 + Apbb1ip protein_coding processed_transcript MGP_C3HHeJ_T0052534.1 MGP_C3HHeJ_G0025126.1 mouse_genomes_project 2 20283195 20340919 + Apbb1ip protein_coding retained_intron MGP_C3HHeJ_T0010325.1 MGP_C3HHeJ_G0008458.1 mouse_genomes_project 2 37186424 37186500 + Mir181a-2 miRNA miRNA MGP_C3HHeJ_T0001060.1 MGP_C3HHeJ_G0000997.1 mouse_genomes_project 2 117434469 117435402 - TEC TEC MGP_C3HHeJ_T0003881.1 MGP_C3HHeJ_G0003464.1 mouse_genomes_project 2 31311925 31315908 + Gm13528 antisense antisense MGP_C3HHeJ_T0055535.1 MGP_C3HHeJ_G0025772.1 mouse_genomes_project 2 88194874 88195855 - MGP_C3HHeJ_P0055535 Olfr1164 protein_coding protein_coding MGP_C3HHeJ_T0058820.1 MGP_C3HHeJ_G0026578.1 mouse_genomes_project 2 168351933 168361943 + MGP_C3HHeJ_P0058820 Wfdc6b protein_coding protein_coding MGP_C3HHeJ_T0059038.1 MGP_C3HHeJ_G0026624.1 mouse_genomes_project 2 170916481 170938036 + MGP_C3HHeJ_P0059038 Ddx27 protein_coding protein_coding MGP_C3HHeJ_T0059039.1 MGP_C3HHeJ_G0026624.1 mouse_genomes_project 2 170916598 170928035 + MGP_C3HHeJ_P0059039 Ddx27 protein_coding protein_coding MGP_C3HHeJ_T0059040.1 MGP_C3HHeJ_G0026624.1 mouse_genomes_project 2 170916598 170926755 + MGP_C3HHeJ_P0059040 Ddx27 protein_coding protein_coding MGP_C3HHeJ_T0059041.1 MGP_C3HHeJ_G0026624.1 mouse_genomes_project 2 170928422 170930084 + Ddx27 protein_coding retained_intron MGP_C3HHeJ_T0059042.1 MGP_C3HHeJ_G0026624.1 mouse_genomes_project 2 170929763 170930512 + Ddx27 protein_coding retained_intron MGP_C3HHeJ_T0059043.1 MGP_C3HHeJ_G0026624.1 mouse_genomes_project 2 170936935 170937992 + Ddx27 protein_coding retained_intron MGP_C3HHeJ_T0059166.1 MGP_C3HHeJ_G0026652.1 mouse_genomes_project 2 174457034 174538249 - MGP_C3HHeJ_P0059166 Bcas1 protein_coding protein_coding MGP_C3HHeJ_T0059167.1 MGP_C3HHeJ_G0026652.1 mouse_genomes_project 2 174457186 174531083 - MGP_C3HHeJ_P0059167 Bcas1 protein_coding protein_coding MGP_C3HHeJ_T0059168.1 MGP_C3HHeJ_G0026652.1 mouse_genomes_project 2 174457187 174538249 - MGP_C3HHeJ_P0059168 Bcas1 protein_coding protein_coding MGP_C3HHeJ_T0059169.1 MGP_C3HHeJ_G0026652.1 mouse_genomes_project 2 174457974 174459784 - Bcas1 protein_coding processed_transcript MGP_C3HHeJ_T0059170.1 MGP_C3HHeJ_G0026652.1 mouse_genomes_project 2 174457988 174467158 - Bcas1 protein_coding processed_transcript MGP_C3HHeJ_T0059171.1 MGP_C3HHeJ_G0026652.1 mouse_genomes_project 2 174458132 174459839 - Bcas1 protein_coding processed_transcript MGP_C3HHeJ_T0059172.1 MGP_C3HHeJ_G0026652.1 mouse_genomes_project 2 174497665 174498698 - Bcas1 protein_coding processed_transcript MGP_C3HHeJ_T0059173.1 MGP_C3HHeJ_G0026652.1 mouse_genomes_project 2 174508141 174538249 - Bcas1 protein_coding processed_transcript MGP_C3HHeJ_T0100445.1 MGP_C3HHeJ_G0038639.1 mouse_genomes_project 2 31084575 31084705 + Snora65 snoRNA snoRNA MGP_C3HHeJ_T0057485.1 MGP_C3HHeJ_G0026256.1 mouse_genomes_project 2 134230861 134271943 - MGP_C3HHeJ_P0057485 Rassf2 protein_coding protein_coding MGP_C3HHeJ_T0057486.1 MGP_C3HHeJ_G0026256.1 mouse_genomes_project 2 134234217 134272143 - MGP_C3HHeJ_P0057486 Rassf2 protein_coding protein_coding MGP_C3HHeJ_T0057487.1 MGP_C3HHeJ_G0026256.1 mouse_genomes_project 2 134242920 134263115 - Rassf2 protein_coding retained_intron MGP_C3HHeJ_T0057488.1 MGP_C3HHeJ_G0026256.1 mouse_genomes_project 2 134244903 134272199 - MGP_C3HHeJ_P0057488 Rassf2 protein_coding protein_coding MGP_C3HHeJ_T0057489.1 MGP_C3HHeJ_G0026256.1 mouse_genomes_project 2 134251701 134271108 - MGP_C3HHeJ_P0057489 Rassf2 protein_coding protein_coding MGP_C3HHeJ_T0010394.1 MGP_C3HHeJ_G0008527.1 mouse_genomes_project 2 168076893 168076964 - Mir7678 miRNA miRNA MGP_C3HHeJ_T0053987.1 MGP_C3HHeJ_G0025370.1 mouse_genomes_project 2 31891385 32057120 - MGP_C3HHeJ_P0053987 Mvb12b protein_coding protein_coding MGP_C3HHeJ_T0053988.1 MGP_C3HHeJ_G0025370.1 mouse_genomes_project 2 31948646 31952095 - Mvb12b protein_coding retained_intron MGP_C3HHeJ_T0053989.1 MGP_C3HHeJ_G0025370.1 mouse_genomes_project 2 31950503 32056019 - Mvb12b protein_coding processed_transcript MGP_C3HHeJ_T0053990.1 MGP_C3HHeJ_G0025370.1 mouse_genomes_project 2 31989452 32056019 - MGP_C3HHeJ_P0053990 Mvb12b protein_coding protein_coding MGP_C3HHeJ_T0053991.1 MGP_C3HHeJ_G0025370.1 mouse_genomes_project 2 32039798 32056656 - Mvb12b protein_coding processed_transcript MGP_C3HHeJ_T0057063.1 MGP_C3HHeJ_G0026158.1 mouse_genomes_project 2 128320101 128507519 - MGP_C3HHeJ_P0057063 Atp8b4 protein_coding protein_coding MGP_C3HHeJ_T0057064.1 MGP_C3HHeJ_G0026158.1 mouse_genomes_project 2 128321632 128498401 - MGP_C3HHeJ_P0057064 Atp8b4 protein_coding protein_coding MGP_C3HHeJ_T0057065.1 MGP_C3HHeJ_G0026158.1 mouse_genomes_project 2 128371359 128498381 - Atp8b4 protein_coding retained_intron MGP_C3HHeJ_T0057066.1 MGP_C3HHeJ_G0026158.1 mouse_genomes_project 2 128371403 128507661 - MGP_C3HHeJ_P0057066 Atp8b4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057067.1 MGP_C3HHeJ_G0026158.1 mouse_genomes_project 2 128396649 128508346 - MGP_C3HHeJ_P0057067 Atp8b4 protein_coding protein_coding MGP_C3HHeJ_T0010271.1 MGP_C3HHeJ_G0008404.1 mouse_genomes_project 2 7712445 7712547 + Gm22925 miRNA miRNA MGP_C3HHeJ_T0100454.1 MGP_C3HHeJ_G0038648.1 mouse_genomes_project 2 52521984 52522093 - Gm23315 snoRNA snoRNA MGP_C3HHeJ_T0056328.1 MGP_C3HHeJ_G0025988.1 mouse_genomes_project 2 112805246 112806185 + MGP_C3HHeJ_P0056328 protein_coding protein_coding MGP_C3HHeJ_T0001069.1 MGP_C3HHeJ_G0001005.1 mouse_genomes_project 2 160195399 160198745 - TEC TEC MGP_C3HHeJ_T0056341.1 MGP_C3HHeJ_G0026001.1 mouse_genomes_project 2 113337447 113338704 - MGP_C3HHeJ_P0056341 protein_coding protein_coding MGP_C3HHeJ_T0057967.1 MGP_C3HHeJ_G0026382.1 mouse_genomes_project 2 155581500 155585301 - MGP_C3HHeJ_P0057967 Defb26 protein_coding protein_coding MGP_C3HHeJ_T0053827.1 MGP_C3HHeJ_G0025342.1 mouse_genomes_project 2 30547393 30553890 + MGP_C3HHeJ_P0053827 Naif1 protein_coding protein_coding MGP_C3HHeJ_T0007136.1 MGP_C3HHeJ_G0005848.1 mouse_genomes_project 2 71166719 71179298 + Platr26 lincRNA lincRNA MGP_C3HHeJ_T0004069.1 MGP_C3HHeJ_G0003597.1 mouse_genomes_project 2 160961637 160962842 - Gm14286 antisense antisense MGP_C3HHeJ_T0007141.1 MGP_C3HHeJ_G0005853.1 mouse_genomes_project 2 72224539 72294026 - 6430710C18Rik lincRNA lincRNA MGP_C3HHeJ_T0007142.1 MGP_C3HHeJ_G0005853.1 mouse_genomes_project 2 72225198 72229546 - 6430710C18Rik lincRNA lincRNA MGP_C3HHeJ_T0007143.1 MGP_C3HHeJ_G0005853.1 mouse_genomes_project 2 72264431 72294071 - 6430710C18Rik lincRNA lincRNA MGP_C3HHeJ_T0007144.1 MGP_C3HHeJ_G0005853.1 mouse_genomes_project 2 72264748 72279912 - 6430710C18Rik lincRNA lincRNA MGP_C3HHeJ_T0052844.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23136209 23142021 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052845.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23136209 23141269 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052852.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23140518 23141386 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052853.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23140550 23142163 - MGP_C3HHeJ_P0052853 BC029214 protein_coding protein_coding MGP_C3HHeJ_T0052854.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23140552 23142141 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052855.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23140553 23141348 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052856.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23140553 23141733 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052857.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23140599 23142077 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052858.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23140629 23142034 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052859.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23140883 23142100 - MGP_C3HHeJ_P0052859 BC029214 protein_coding protein_coding MGP_C3HHeJ_T0052860.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23141080 23142092 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052861.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23141096 23141996 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052862.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23141327 23142017 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0056258.1 MGP_C3HHeJ_G0025957.1 mouse_genomes_project 2 108167141 108174969 + MGP_C3HHeJ_P0056258 Kcna4 protein_coding protein_coding MGP_C3HHeJ_T0056259.1 MGP_C3HHeJ_G0025957.1 mouse_genomes_project 2 108167895 108170941 + Kcna4 protein_coding processed_transcript MGP_C3HHeJ_T0055503.1 MGP_C3HHeJ_G0025743.1 mouse_genomes_project 2 87712679 87713603 + MGP_C3HHeJ_P0055503 protein_coding protein_coding MGP_C3HHeJ_T0053417.1 MGP_C3HHeJ_G0025285.1 mouse_genomes_project 2 27955598 27972920 - MGP_C3HHeJ_P0053417 Wdr34 protein_coding protein_coding MGP_C3HHeJ_T0053418.1 MGP_C3HHeJ_G0025285.1 mouse_genomes_project 2 27955964 27956558 - Wdr34 protein_coding retained_intron MGP_C3HHeJ_T0053419.1 MGP_C3HHeJ_G0025285.1 mouse_genomes_project 2 27957846 27959099 - Wdr34 protein_coding retained_intron MGP_C3HHeJ_T0053420.1 MGP_C3HHeJ_G0025285.1 mouse_genomes_project 2 27971219 27972900 - Wdr34 protein_coding processed_transcript MGP_C3HHeJ_T0101179.1 MGP_C3HHeJ_G0039328.1 mouse_genomes_project 2 153242652 153243332 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101180.1 MGP_C3HHeJ_G0039328.1 mouse_genomes_project 2 153242885 153243641 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0055482.1 MGP_C3HHeJ_G0025730.1 mouse_genomes_project 2 87319907 87321271 + MGP_C3HHeJ_P0055482 protein_coding protein_coding MGP_C3HHeJ_T0057159.1 MGP_C3HHeJ_G0026179.1 mouse_genomes_project 2 129520403 129528688 - MGP_C3HHeJ_P0057159 Fahd2a protein_coding protein_coding MGP_C3HHeJ_T0057160.1 MGP_C3HHeJ_G0026179.1 mouse_genomes_project 2 129520404 129528703 - Fahd2a protein_coding retained_intron MGP_C3HHeJ_T0057161.1 MGP_C3HHeJ_G0026179.1 mouse_genomes_project 2 129520459 129522500 - Fahd2a protein_coding processed_transcript MGP_C3HHeJ_T0057162.1 MGP_C3HHeJ_G0026179.1 mouse_genomes_project 2 129521025 129528695 - Fahd2a protein_coding processed_transcript MGP_C3HHeJ_T0057163.1 MGP_C3HHeJ_G0026179.1 mouse_genomes_project 2 129522302 129528618 - Fahd2a protein_coding processed_transcript MGP_C3HHeJ_T0057164.1 MGP_C3HHeJ_G0026179.1 mouse_genomes_project 2 129522591 129528654 - Fahd2a protein_coding retained_intron MGP_C3HHeJ_T0057165.1 MGP_C3HHeJ_G0026179.1 mouse_genomes_project 2 129524611 129528646 - Fahd2a protein_coding processed_transcript MGP_C3HHeJ_T0007354.1 MGP_C3HHeJ_G0006028.1 mouse_genomes_project 2 185494911 185496027 + Gm27032 lincRNA lincRNA MGP_C3HHeJ_T0058695.1 MGP_C3HHeJ_G0026534.1 mouse_genomes_project 2 166708212 166741171 + MGP_C3HHeJ_P0058695 Mybl2 protein_coding protein_coding MGP_C3HHeJ_T0058696.1 MGP_C3HHeJ_G0026534.1 mouse_genomes_project 2 166712872 166719147 + Mybl2 protein_coding processed_transcript MGP_C3HHeJ_T0058697.1 MGP_C3HHeJ_G0026534.1 mouse_genomes_project 2 166722884 166727801 + Mybl2 protein_coding retained_intron MGP_C3HHeJ_T0058698.1 MGP_C3HHeJ_G0026534.1 mouse_genomes_project 2 166729402 166738287 + MGP_C3HHeJ_P0058698 Mybl2 protein_coding protein_coding MGP_C3HHeJ_T0058699.1 MGP_C3HHeJ_G0026534.1 mouse_genomes_project 2 166729810 166735425 + Mybl2 protein_coding retained_intron MGP_C3HHeJ_T0013604.1 MGP_C3HHeJ_G0011708.1 mouse_genomes_project 2 131076057 131076536 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017604.1 MGP_C3HHeJ_G0015213.1 mouse_genomes_project 2 107504009 107504465 - BB218582 processed_transcript processed_transcript MGP_C3HHeJ_T0017605.1 MGP_C3HHeJ_G0015213.1 mouse_genomes_project 2 107504012 107511486 - BB218582 processed_transcript processed_transcript MGP_C3HHeJ_T0017606.1 MGP_C3HHeJ_G0015213.1 mouse_genomes_project 2 107508315 107511456 - BB218582 processed_transcript processed_transcript MGP_C3HHeJ_T0052470.1 MGP_C3HHeJ_G0025116.1 mouse_genomes_project 2 16975266 17071937 - MGP_C3HHeJ_P0052470 4921504E06Rik protein_coding protein_coding MGP_C3HHeJ_T0052471.1 MGP_C3HHeJ_G0025116.1 mouse_genomes_project 2 17010793 17071937 - 4921504E06Rik protein_coding retained_intron MGP_C3HHeJ_T0003982.1 MGP_C3HHeJ_G0003531.1 mouse_genomes_project 2 114650735 114704986 - Gm13963 antisense antisense MGP_C3HHeJ_T0058817.1 MGP_C3HHeJ_G0026577.1 mouse_genomes_project 2 168334146 168352027 - MGP_C3HHeJ_P0058817 Wfdc8 protein_coding protein_coding MGP_C3HHeJ_T0058818.1 MGP_C3HHeJ_G0026577.1 mouse_genomes_project 2 168334154 168357117 - MGP_C3HHeJ_P0058818 Wfdc8 protein_coding protein_coding MGP_C3HHeJ_T0058819.1 MGP_C3HHeJ_G0026577.1 mouse_genomes_project 2 168334902 168352027 - MGP_C3HHeJ_P0058819 Wfdc8 protein_coding protein_coding MGP_C3HHeJ_T0055588.1 MGP_C3HHeJ_G0025820.1 mouse_genomes_project 2 89514404 89516783 - MGP_C3HHeJ_P0055588 Olfr1234 protein_coding protein_coding MGP_C3HHeJ_T0055589.1 MGP_C3HHeJ_G0025820.1 mouse_genomes_project 2 89514404 89515349 - MGP_C3HHeJ_P0055589 Olfr1234 protein_coding protein_coding MGP_C3HHeJ_T0055590.1 MGP_C3HHeJ_G0025820.1 mouse_genomes_project 2 89515485 89516787 - Olfr1234 protein_coding processed_transcript MGP_C3HHeJ_T0003953.1 MGP_C3HHeJ_G0003514.1 mouse_genomes_project 2 76326791 76391092 + Gm13938 antisense antisense MGP_C3HHeJ_T0003871.1 MGP_C3HHeJ_G0003454.1 mouse_genomes_project 2 28778728 28782240 + 4930527E20Rik antisense antisense MGP_C3HHeJ_T0010360.1 MGP_C3HHeJ_G0008493.1 mouse_genomes_project 2 115422904 115422959 - Mir7002 miRNA miRNA MGP_C3HHeJ_T0013548.1 MGP_C3HHeJ_G0011652.1 mouse_genomes_project 2 104545440 104545914 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011416.1 MGP_C3HHeJ_G0009549.1 mouse_genomes_project 2 128263244 128263536 - Gm24739 misc_RNA misc_RNA MGP_C3HHeJ_T0054800.1 MGP_C3HHeJ_G0025526.1 mouse_genomes_project 2 68423149 68485752 + MGP_C3HHeJ_P0054800 Nostrin protein_coding protein_coding MGP_C3HHeJ_T0054801.1 MGP_C3HHeJ_G0025526.1 mouse_genomes_project 2 68474893 68481976 + Nostrin protein_coding processed_transcript MGP_C3HHeJ_T0013410.1 MGP_C3HHeJ_G0011514.1 mouse_genomes_project 2 56100612 56100801 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056543.1 MGP_C3HHeJ_G0026053.1 mouse_genomes_project 2 120683720 120688055 + MGP_C3HHeJ_P0056543 Gchfr protein_coding protein_coding MGP_C3HHeJ_T0004041.1 MGP_C3HHeJ_G0003572.1 mouse_genomes_project 2 146754731 146764386 - Banf2os antisense antisense MGP_C3HHeJ_T0004042.1 MGP_C3HHeJ_G0003572.1 mouse_genomes_project 2 146755158 146764363 - Banf2os antisense antisense MGP_C3HHeJ_T0004049.1 MGP_C3HHeJ_G0003579.1 mouse_genomes_project 2 150175854 150176736 - AI646519 antisense antisense MGP_C3HHeJ_T0010374.1 MGP_C3HHeJ_G0008507.1 mouse_genomes_project 2 133248586 133248666 - Mir6973b miRNA miRNA MGP_C3HHeJ_T0055460.1 MGP_C3HHeJ_G0025709.1 mouse_genomes_project 2 86765183 86766152 + MGP_C3HHeJ_P0055460 Olfr1093 protein_coding protein_coding MGP_C3HHeJ_T0013451.1 MGP_C3HHeJ_G0011555.1 mouse_genomes_project 2 71820723 71821019 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004057.1 MGP_C3HHeJ_G0003586.1 mouse_genomes_project 2 155733889 155735329 - 1700030C14Rik antisense antisense MGP_C3HHeJ_T0054036.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33014861 33033947 - Fbxw2 protein_coding processed_transcript MGP_C3HHeJ_T0054037.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33015525 33037100 - MGP_C3HHeJ_P0054037 Fbxw2 protein_coding protein_coding MGP_C3HHeJ_T0054038.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33015685 33034208 - MGP_C3HHeJ_P0054038 Fbxw2 protein_coding protein_coding MGP_C3HHeJ_T0054039.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33015686 33037262 - MGP_C3HHeJ_P0054039 Fbxw2 protein_coding protein_coding MGP_C3HHeJ_T0054040.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33015688 33037257 - MGP_C3HHeJ_P0054040 Fbxw2 protein_coding protein_coding MGP_C3HHeJ_T0054041.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33015688 33037098 - MGP_C3HHeJ_P0054041 Fbxw2 protein_coding protein_coding MGP_C3HHeJ_T0054042.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33016600 33037228 - MGP_C3HHeJ_P0054042 Fbxw2 protein_coding protein_coding MGP_C3HHeJ_T0054043.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33017625 33019013 - Fbxw2 protein_coding processed_transcript MGP_C3HHeJ_T0054044.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33022188 33037338 - Fbxw2 protein_coding processed_transcript MGP_C3HHeJ_T0054045.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33023087 33037194 - Fbxw2 protein_coding processed_transcript MGP_C3HHeJ_T0054046.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33026470 33037244 - Fbxw2 protein_coding processed_transcript MGP_C3HHeJ_T0054047.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33032883 33037234 - Fbxw2 protein_coding retained_intron MGP_C3HHeJ_T0054048.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33033630 33037049 - Fbxw2 protein_coding processed_transcript MGP_C3HHeJ_T0054049.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33036289 33037242 - Fbxw2 protein_coding processed_transcript MGP_C3HHeJ_T0013524.1 MGP_C3HHeJ_G0011628.1 mouse_genomes_project 2 94428949 94429529 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001017.1 MGP_C3HHeJ_G0000954.1 mouse_genomes_project 2 12057131 12058540 + TEC TEC MGP_C3HHeJ_T0059283.1 MGP_C3HHeJ_G0026690.1 mouse_genomes_project 2 179106655 179130001 + MGP_C3HHeJ_P0059283 Edn3 protein_coding protein_coding MGP_C3HHeJ_T0059284.1 MGP_C3HHeJ_G0026690.1 mouse_genomes_project 2 179106835 179127939 + MGP_C3HHeJ_P0059284 Edn3 protein_coding protein_coding MGP_C3HHeJ_T0059285.1 MGP_C3HHeJ_G0026690.1 mouse_genomes_project 2 179107088 179128544 + Edn3 protein_coding retained_intron MGP_C3HHeJ_T0059286.1 MGP_C3HHeJ_G0026690.1 mouse_genomes_project 2 179115958 179128499 + Edn3 protein_coding processed_transcript MGP_C3HHeJ_T0055915.1 MGP_C3HHeJ_G0025887.1 mouse_genomes_project 2 92811381 92812447 + 1700029I15Rik protein_coding retained_intron MGP_C3HHeJ_T0055916.1 MGP_C3HHeJ_G0025887.1 mouse_genomes_project 2 92811761 92812447 + MGP_C3HHeJ_P0055916 1700029I15Rik protein_coding protein_coding MGP_C3HHeJ_T0055917.1 MGP_C3HHeJ_G0025887.1 mouse_genomes_project 2 92811761 92814550 + MGP_C3HHeJ_P0055917 1700029I15Rik protein_coding protein_coding MGP_C3HHeJ_T0055918.1 MGP_C3HHeJ_G0025887.1 mouse_genomes_project 2 92811761 92812433 + MGP_C3HHeJ_P0055918 1700029I15Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007063.1 MGP_C3HHeJ_G0005791.1 mouse_genomes_project 2 16855915 16863005 + lincRNA lincRNA MGP_C3HHeJ_T0007064.1 MGP_C3HHeJ_G0005791.1 mouse_genomes_project 2 16856436 16864853 + lincRNA lincRNA MGP_C3HHeJ_T0007065.1 MGP_C3HHeJ_G0005791.1 mouse_genomes_project 2 16856535 16862739 + lincRNA lincRNA MGP_C3HHeJ_T0058121.1 MGP_C3HHeJ_G0026430.1 mouse_genomes_project 2 157441481 157459657 + MGP_C3HHeJ_P0058121 protein_coding protein_coding MGP_C3HHeJ_T0013313.1 MGP_C3HHeJ_G0011417.1 mouse_genomes_project 2 19027831 19028452 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059174.1 MGP_C3HHeJ_G0026653.1 mouse_genomes_project 2 174594892 174610744 - MGP_C3HHeJ_P0059174 Cyp24a1 protein_coding protein_coding MGP_C3HHeJ_T0052967.1 MGP_C3HHeJ_G0025210.1 mouse_genomes_project 2 23701389 23716103 - Ubac1 protein_coding processed_transcript MGP_C3HHeJ_T0052968.1 MGP_C3HHeJ_G0025210.1 mouse_genomes_project 2 23701389 23729930 - MGP_C3HHeJ_P0052968 Ubac1 protein_coding protein_coding MGP_C3HHeJ_T0052969.1 MGP_C3HHeJ_G0025210.1 mouse_genomes_project 2 23701652 23717406 - Ubac1 protein_coding processed_transcript MGP_C3HHeJ_T0052970.1 MGP_C3HHeJ_G0025210.1 mouse_genomes_project 2 23713586 23724495 - MGP_C3HHeJ_P0052970 Ubac1 protein_coding protein_coding MGP_C3HHeJ_T0052971.1 MGP_C3HHeJ_G0025210.1 mouse_genomes_project 2 23714709 23729715 - MGP_C3HHeJ_P0052971 Ubac1 protein_coding protein_coding MGP_C3HHeJ_T0052972.1 MGP_C3HHeJ_G0025210.1 mouse_genomes_project 2 23717077 23719136 - Ubac1 protein_coding processed_transcript MGP_C3HHeJ_T0052973.1 MGP_C3HHeJ_G0025210.1 mouse_genomes_project 2 23718717 23725661 - Ubac1 protein_coding processed_transcript MGP_C3HHeJ_T0052974.1 MGP_C3HHeJ_G0025210.1 mouse_genomes_project 2 23723094 23729749 - Ubac1 protein_coding processed_transcript MGP_C3HHeJ_T0052975.1 MGP_C3HHeJ_G0025210.1 mouse_genomes_project 2 23724147 23729785 - Ubac1 protein_coding processed_transcript MGP_C3HHeJ_T0055416.1 MGP_C3HHeJ_G0025667.1 mouse_genomes_project 2 85570066 85571160 + MGP_C3HHeJ_P0055416 Olfr1014 protein_coding protein_coding MGP_C3HHeJ_T0013316.1 MGP_C3HHeJ_G0011420.1 mouse_genomes_project 2 20424236 20424776 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007265.1 MGP_C3HHeJ_G0005952.1 mouse_genomes_project 2 150133367 150134890 - Gm14110 lincRNA lincRNA MGP_C3HHeJ_T0011427.1 MGP_C3HHeJ_G0009560.1 mouse_genomes_project 2 170553442 170553789 + Gm25265 misc_RNA misc_RNA MGP_C3HHeJ_T0013319.1 MGP_C3HHeJ_G0011423.1 mouse_genomes_project 2 21070336 21070784 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057530.1 MGP_C3HHeJ_G0026263.1 mouse_genomes_project 2 134961431 135029778 + MGP_C3HHeJ_P0057530 1110034G24Rik protein_coding protein_coding MGP_C3HHeJ_T0057531.1 MGP_C3HHeJ_G0026263.1 mouse_genomes_project 2 134964658 135029226 + MGP_C3HHeJ_P0057531 1110034G24Rik protein_coding protein_coding MGP_C3HHeJ_T0057532.1 MGP_C3HHeJ_G0026263.1 mouse_genomes_project 2 134964784 135029778 + MGP_C3HHeJ_P0057532 1110034G24Rik protein_coding protein_coding MGP_C3HHeJ_T0057533.1 MGP_C3HHeJ_G0026263.1 mouse_genomes_project 2 134975586 135029305 + 1110034G24Rik protein_coding processed_transcript MGP_C3HHeJ_T0056036.1 MGP_C3HHeJ_G0025912.1 mouse_genomes_project 2 102346040 102353833 + Traf6 protein_coding processed_transcript MGP_C3HHeJ_T0056037.1 MGP_C3HHeJ_G0025912.1 mouse_genomes_project 2 102346051 102369263 + MGP_C3HHeJ_P0056037 Traf6 protein_coding protein_coding MGP_C3HHeJ_T0056038.1 MGP_C3HHeJ_G0025912.1 mouse_genomes_project 2 102351812 102357678 + Traf6 protein_coding processed_transcript MGP_C3HHeJ_T0053426.1 MGP_C3HHeJ_G0025287.1 mouse_genomes_project 2 28008099 28011541 + MGP_C3HHeJ_P0053426 Pkn3 protein_coding protein_coding MGP_C3HHeJ_T0053427.1 MGP_C3HHeJ_G0025287.1 mouse_genomes_project 2 28008158 28023581 + Pkn3 protein_coding retained_intron MGP_C3HHeJ_T0053428.1 MGP_C3HHeJ_G0025287.1 mouse_genomes_project 2 28008628 28010398 + MGP_C3HHeJ_P0053428 Pkn3 protein_coding protein_coding MGP_C3HHeJ_T0053429.1 MGP_C3HHeJ_G0025287.1 mouse_genomes_project 2 28008999 28023587 + MGP_C3HHeJ_P0053429 Pkn3 protein_coding protein_coding MGP_C3HHeJ_T0053430.1 MGP_C3HHeJ_G0025287.1 mouse_genomes_project 2 28009113 28016828 + Pkn3 protein_coding retained_intron MGP_C3HHeJ_T0053431.1 MGP_C3HHeJ_G0025287.1 mouse_genomes_project 2 28009169 28023590 + Pkn3 protein_coding retained_intron MGP_C3HHeJ_T0053432.1 MGP_C3HHeJ_G0025287.1 mouse_genomes_project 2 28011266 28013637 + Pkn3 protein_coding retained_intron MGP_C3HHeJ_T0053433.1 MGP_C3HHeJ_G0025287.1 mouse_genomes_project 2 28015925 28018317 + Pkn3 protein_coding retained_intron MGP_C3HHeJ_T0052657.1 MGP_C3HHeJ_G0025149.1 mouse_genomes_project 2 22598414 22609596 + MGP_C3HHeJ_P0052657 Dph7 protein_coding protein_coding MGP_C3HHeJ_T0052658.1 MGP_C3HHeJ_G0025149.1 mouse_genomes_project 2 22598436 22609594 + MGP_C3HHeJ_P0052658 Dph7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052659.1 MGP_C3HHeJ_G0025149.1 mouse_genomes_project 2 22598466 22603140 + MGP_C3HHeJ_P0052659 Dph7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052660.1 MGP_C3HHeJ_G0025149.1 mouse_genomes_project 2 22598480 22609596 + Dph7 protein_coding retained_intron MGP_C3HHeJ_T0052661.1 MGP_C3HHeJ_G0025149.1 mouse_genomes_project 2 22598487 22607104 + MGP_C3HHeJ_P0052661 Dph7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013323.1 MGP_C3HHeJ_G0011427.1 mouse_genomes_project 2 22215312 22216924 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057767.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 148997143 149275436 - MGP_C3HHeJ_P0057767 Ralgapa2 protein_coding protein_coding MGP_C3HHeJ_T0057768.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149001223 149207866 - MGP_C3HHeJ_P0057768 Ralgapa2 protein_coding protein_coding MGP_C3HHeJ_T0057769.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149002039 149018519 - Ralgapa2 protein_coding processed_transcript MGP_C3HHeJ_T0057770.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149005452 149275331 - MGP_C3HHeJ_P0057770 Ralgapa2 protein_coding protein_coding MGP_C3HHeJ_T0057771.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149015719 149150821 - MGP_C3HHeJ_P0057771 Ralgapa2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057772.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149071679 149275331 - MGP_C3HHeJ_P0057772 Ralgapa2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0057773.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149121443 149168654 - Ralgapa2 protein_coding retained_intron MGP_C3HHeJ_T0057774.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149167207 149175275 - Ralgapa2 protein_coding retained_intron MGP_C3HHeJ_T0057775.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149182463 149275343 - Ralgapa2 protein_coding retained_intron MGP_C3HHeJ_T0057776.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149191817 149275436 - Ralgapa2 protein_coding retained_intron MGP_C3HHeJ_T0057777.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149246957 149275458 - Ralgapa2 protein_coding retained_intron MGP_C3HHeJ_T0010288.1 MGP_C3HHeJ_G0008421.1 mouse_genomes_project 2 11616373 11616452 + Mir511 miRNA miRNA MGP_C3HHeJ_T0057936.1 MGP_C3HHeJ_G0026371.1 mouse_genomes_project 2 155294823 155343635 + MGP_C3HHeJ_P0057936 Csnk2a1 protein_coding protein_coding MGP_C3HHeJ_T0057937.1 MGP_C3HHeJ_G0026371.1 mouse_genomes_project 2 155294860 155335123 + Csnk2a1 protein_coding retained_intron MGP_C3HHeJ_T0057938.1 MGP_C3HHeJ_G0026371.1 mouse_genomes_project 2 155294880 155328865 + MGP_C3HHeJ_P0057938 Csnk2a1 protein_coding protein_coding MGP_C3HHeJ_T0057939.1 MGP_C3HHeJ_G0026371.1 mouse_genomes_project 2 155294892 155325432 + MGP_C3HHeJ_P0057939 Csnk2a1 protein_coding protein_coding MGP_C3HHeJ_T0057940.1 MGP_C3HHeJ_G0026371.1 mouse_genomes_project 2 155294897 155320892 + Csnk2a1 protein_coding retained_intron MGP_C3HHeJ_T0058627.1 MGP_C3HHeJ_G0026521.1 mouse_genomes_project 2 164138294 164189568 - MGP_C3HHeJ_P0058627 protein_coding protein_coding MGP_C3HHeJ_T0013511.1 MGP_C3HHeJ_G0011615.1 mouse_genomes_project 2 87973246 87973773 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058204.1 MGP_C3HHeJ_G0026450.1 mouse_genomes_project 2 158544782 158568508 - Pigu protein_coding processed_transcript MGP_C3HHeJ_T0058205.1 MGP_C3HHeJ_G0026450.1 mouse_genomes_project 2 158544782 158627325 - MGP_C3HHeJ_P0058205 Pigu protein_coding protein_coding MGP_C3HHeJ_T0058206.1 MGP_C3HHeJ_G0026450.1 mouse_genomes_project 2 158544783 158627319 - MGP_C3HHeJ_P0058206 Pigu protein_coding protein_coding MGP_C3HHeJ_T0058207.1 MGP_C3HHeJ_G0026450.1 mouse_genomes_project 2 158568471 158571845 - Pigu protein_coding processed_transcript MGP_C3HHeJ_T0058208.1 MGP_C3HHeJ_G0026450.1 mouse_genomes_project 2 158601687 158627314 - Pigu protein_coding retained_intron MGP_C3HHeJ_T0057903.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154628891 154670786 - MGP_C3HHeJ_P0057903 Snph protein_coding protein_coding MGP_C3HHeJ_T0057904.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154628891 154670810 - MGP_C3HHeJ_P0057904 Snph protein_coding protein_coding MGP_C3HHeJ_T0057905.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154628906 154670804 - MGP_C3HHeJ_P0057905 Snph protein_coding protein_coding MGP_C3HHeJ_T0057906.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154630067 154670830 - MGP_C3HHeJ_P0057906 Snph protein_coding protein_coding MGP_C3HHeJ_T0057907.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154635497 154670708 - MGP_C3HHeJ_P0057907 Snph protein_coding protein_coding MGP_C3HHeJ_T0057908.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154639158 154670763 - Snph protein_coding retained_intron MGP_C3HHeJ_T0057909.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154639321 154670777 - MGP_C3HHeJ_P0057909 Snph protein_coding protein_coding MGP_C3HHeJ_T0057910.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154639338 154670798 - MGP_C3HHeJ_P0057910 Snph protein_coding protein_coding MGP_C3HHeJ_T0057911.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154639546 154670810 - Snph protein_coding processed_transcript MGP_C3HHeJ_T0057912.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154659461 154670804 - Snph protein_coding processed_transcript MGP_C3HHeJ_T0057913.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154669969 154670790 - Snph protein_coding retained_intron MGP_C3HHeJ_T0003952.1 MGP_C3HHeJ_G0003513.1 mouse_genomes_project 2 74703528 74885676 + 2600014E21Rik antisense antisense MGP_C3HHeJ_T0013439.1 MGP_C3HHeJ_G0011543.1 mouse_genomes_project 2 66142562 66143055 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052379.1 MGP_C3HHeJ_G0025099.1 mouse_genomes_project 2 12454985 12490405 + MGP_C3HHeJ_P0052379 Arl5b protein_coding protein_coding MGP_C3HHeJ_T0052381.1 MGP_C3HHeJ_G0025099.1 mouse_genomes_project 2 12460830 12490409 + MGP_C3HHeJ_P0052381 Arl5b protein_coding protein_coding MGP_C3HHeJ_T0052382.1 MGP_C3HHeJ_G0025099.1 mouse_genomes_project 2 12460877 12484548 + MGP_C3HHeJ_P0052382 Arl5b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052383.1 MGP_C3HHeJ_G0025099.1 mouse_genomes_project 2 12460937 12485524 + MGP_C3HHeJ_P0052383 Arl5b protein_coding protein_coding MGP_C3HHeJ_T0052384.1 MGP_C3HHeJ_G0025099.1 mouse_genomes_project 2 12476091 12484558 + MGP_C3HHeJ_P0052384 Arl5b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052385.1 MGP_C3HHeJ_G0025099.1 mouse_genomes_project 2 12477914 12481124 + Arl5b protein_coding retained_intron MGP_C3HHeJ_T0052386.1 MGP_C3HHeJ_G0025099.1 mouse_genomes_project 2 12482951 12490405 + MGP_C3HHeJ_P0052386 Arl5b protein_coding protein_coding MGP_C3HHeJ_T0010372.1 MGP_C3HHeJ_G0008505.1 mouse_genomes_project 2 132176545 132176662 - miRNA miRNA MGP_C3HHeJ_T0057687.1 MGP_C3HHeJ_G0026302.1 mouse_genomes_project 2 147009656 147040647 - MGP_C3HHeJ_P0057687 Ovol2 protein_coding protein_coding MGP_C3HHeJ_T0057688.1 MGP_C3HHeJ_G0026302.1 mouse_genomes_project 2 147009656 147041098 - MGP_C3HHeJ_P0057688 Ovol2 protein_coding protein_coding MGP_C3HHeJ_T0057689.1 MGP_C3HHeJ_G0026302.1 mouse_genomes_project 2 147022254 147040278 - Ovol2 protein_coding processed_transcript MGP_C3HHeJ_T0056338.1 MGP_C3HHeJ_G0025998.1 mouse_genomes_project 2 113255514 113256468 - MGP_C3HHeJ_P0056338 Olfr1312 protein_coding protein_coding MGP_C3HHeJ_T0058222.1 MGP_C3HHeJ_G0026453.1 mouse_genomes_project 2 158772732 158798136 - MGP_C3HHeJ_P0058222 Ggt7 protein_coding protein_coding MGP_C3HHeJ_T0058223.1 MGP_C3HHeJ_G0026453.1 mouse_genomes_project 2 158777314 158781750 - Ggt7 protein_coding retained_intron MGP_C3HHeJ_T0058224.1 MGP_C3HHeJ_G0026453.1 mouse_genomes_project 2 158778383 158785831 - Ggt7 protein_coding retained_intron MGP_C3HHeJ_T0058225.1 MGP_C3HHeJ_G0026453.1 mouse_genomes_project 2 158783350 158789630 - MGP_C3HHeJ_P0058225 Ggt7 protein_coding protein_coding MGP_C3HHeJ_T0058226.1 MGP_C3HHeJ_G0026453.1 mouse_genomes_project 2 158787459 158801656 - MGP_C3HHeJ_P0058226 Ggt7 protein_coding protein_coding MGP_C3HHeJ_T0013419.1 MGP_C3HHeJ_G0011523.1 mouse_genomes_project 2 58311092 58311522 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054584.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58839946 58959507 - MGP_C3HHeJ_P0054584 Baz2b protein_coding unknown_likely_coding MGP_C3HHeJ_T0054585.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58839950 59076044 - MGP_C3HHeJ_P0054585 Baz2b protein_coding protein_coding MGP_C3HHeJ_T0054586.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58840032 58947907 - MGP_C3HHeJ_P0054586 Baz2b protein_coding protein_coding MGP_C3HHeJ_T0054587.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58843772 58853124 - MGP_C3HHeJ_P0054587 Baz2b protein_coding protein_coding MGP_C3HHeJ_T0054588.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58854767 58864519 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0054589.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58857497 58861138 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0054590.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58865308 58888152 - MGP_C3HHeJ_P0054590 Baz2b protein_coding protein_coding MGP_C3HHeJ_T0054591.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58893397 58899980 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0054592.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58918711 59076087 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0054593.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58924825 59042123 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0054594.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58946268 59075939 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0054595.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 59028882 59168635 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0054596.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 59163342 59168597 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0054597.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 59163809 59167955 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0054598.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 59163810 59168544 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0013557.1 MGP_C3HHeJ_G0011661.1 mouse_genomes_project 2 106830234 106830390 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055119.1 MGP_C3HHeJ_G0025595.1 mouse_genomes_project 2 75960279 75966849 - MGP_C3HHeJ_P0055119 Cyct protein_coding protein_coding MGP_C3HHeJ_T0007300.1 MGP_C3HHeJ_G0005981.1 mouse_genomes_project 2 166811746 166815808 - Gm14254 lincRNA lincRNA MGP_C3HHeJ_T0052945.1 MGP_C3HHeJ_G0025207.1 mouse_genomes_project 2 23529547 23533801 - MGP_C3HHeJ_P0052945 Sohlh1 protein_coding protein_coding MGP_C3HHeJ_T0058745.1 MGP_C3HHeJ_G0026549.1 mouse_genomes_project 2 167537861 167599439 - MGP_C3HHeJ_P0058745 Rims4 protein_coding protein_coding MGP_C3HHeJ_T0013375.1 MGP_C3HHeJ_G0011479.1 mouse_genomes_project 2 43299798 43302485 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013525.1 MGP_C3HHeJ_G0011629.1 mouse_genomes_project 2 94872293 94872890 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055563.1 MGP_C3HHeJ_G0025799.1 mouse_genomes_project 2 89106733 89107669 + MGP_C3HHeJ_P0055563 Olfr1212 protein_coding protein_coding MGP_C3HHeJ_T0053099.1 MGP_C3HHeJ_G0025230.1 mouse_genomes_project 2 24586827 24601093 - MGP_C3HHeJ_P0053099 Abo protein_coding protein_coding MGP_C3HHeJ_T0053100.1 MGP_C3HHeJ_G0025230.1 mouse_genomes_project 2 24586827 24610614 - MGP_C3HHeJ_P0053100 Abo protein_coding protein_coding MGP_C3HHeJ_T0013513.1 MGP_C3HHeJ_G0011617.1 mouse_genomes_project 2 89358231 89359038 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056242.1 MGP_C3HHeJ_G0025952.1 mouse_genomes_project 2 106701422 106758476 + MGP_C3HHeJ_P0056242 Immp1l protein_coding protein_coding MGP_C3HHeJ_T0011404.1 MGP_C3HHeJ_G0009537.1 mouse_genomes_project 2 48583364 48583474 - Gm25223 misc_RNA misc_RNA MGP_C3HHeJ_T0055531.1 MGP_C3HHeJ_G0025769.1 mouse_genomes_project 2 88134184 88135126 - MGP_C3HHeJ_P0055531 Olfr73 protein_coding protein_coding MGP_C3HHeJ_T0007318.1 MGP_C3HHeJ_G0005995.1 mouse_genomes_project 2 171733786 171736048 + 9230111E07Rik lincRNA lincRNA MGP_C3HHeJ_T0055855.1 MGP_C3HHeJ_G0025880.1 mouse_genomes_project 2 92327730 92329614 - MGP_C3HHeJ_P0055855 Mdk protein_coding protein_coding MGP_C3HHeJ_T0055856.1 MGP_C3HHeJ_G0025880.1 mouse_genomes_project 2 92327753 92329706 - MGP_C3HHeJ_P0055856 Mdk protein_coding protein_coding MGP_C3HHeJ_T0055857.1 MGP_C3HHeJ_G0025880.1 mouse_genomes_project 2 92327891 92329625 - MGP_C3HHeJ_P0055857 Mdk protein_coding protein_coding MGP_C3HHeJ_T0057723.1 MGP_C3HHeJ_G0026310.1 mouse_genomes_project 2 147327771 147504222 + MGP_C3HHeJ_P0057723 Dtd1 protein_coding protein_coding MGP_C3HHeJ_T0057724.1 MGP_C3HHeJ_G0026310.1 mouse_genomes_project 2 147349948 147503904 + Dtd1 protein_coding processed_transcript MGP_C3HHeJ_T0057725.1 MGP_C3HHeJ_G0026310.1 mouse_genomes_project 2 147408966 147481116 + Dtd1 protein_coding processed_transcript MGP_C3HHeJ_T0057726.1 MGP_C3HHeJ_G0026310.1 mouse_genomes_project 2 147467124 147503958 + Dtd1 protein_coding processed_transcript MGP_C3HHeJ_T0057727.1 MGP_C3HHeJ_G0026310.1 mouse_genomes_project 2 147472522 147503739 + Dtd1 protein_coding processed_transcript MGP_C3HHeJ_T0056488.1 MGP_C3HHeJ_G0026041.1 mouse_genomes_project 2 120256498 120264996 - MGP_C3HHeJ_P0056488 protein_coding protein_coding MGP_C3HHeJ_T0056489.1 MGP_C3HHeJ_G0026041.1 mouse_genomes_project 2 120259832 120264960 - protein_coding retained_intron MGP_C3HHeJ_T0058008.1 MGP_C3HHeJ_G0026399.1 mouse_genomes_project 2 156022409 156023720 - MGP_C3HHeJ_P0058008 Foxs1 protein_coding protein_coding MGP_C3HHeJ_T0059200.1 MGP_C3HHeJ_G0026668.1 mouse_genomes_project 2 177242279 177258143 + Spo11 protein_coding retained_intron MGP_C3HHeJ_T0059201.1 MGP_C3HHeJ_G0026668.1 mouse_genomes_project 2 177244393 177258137 + MGP_C3HHeJ_P0059201 Spo11 protein_coding protein_coding MGP_C3HHeJ_T0059202.1 MGP_C3HHeJ_G0026668.1 mouse_genomes_project 2 177244400 177258139 + MGP_C3HHeJ_P0059202 Spo11 protein_coding protein_coding MGP_C3HHeJ_T0059203.1 MGP_C3HHeJ_G0026668.1 mouse_genomes_project 2 177244400 177258148 + MGP_C3HHeJ_P0059203 Spo11 protein_coding protein_coding MGP_C3HHeJ_T0059204.1 MGP_C3HHeJ_G0026668.1 mouse_genomes_project 2 177250430 177256614 + Spo11 protein_coding processed_transcript MGP_C3HHeJ_T0058688.1 MGP_C3HHeJ_G0026532.1 mouse_genomes_project 2 166635933 166664171 + MGP_C3HHeJ_P0058688 Sgk2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0058689.1 MGP_C3HHeJ_G0026532.1 mouse_genomes_project 2 166636018 166665223 + MGP_C3HHeJ_P0058689 Sgk2 protein_coding protein_coding MGP_C3HHeJ_T0058690.1 MGP_C3HHeJ_G0026532.1 mouse_genomes_project 2 166648061 166656784 + Sgk2 protein_coding retained_intron MGP_C3HHeJ_T0003985.1 MGP_C3HHeJ_G0003534.1 mouse_genomes_project 2 114962309 114982830 - 4930533B01Rik antisense antisense MGP_C3HHeJ_T0007204.1 MGP_C3HHeJ_G0005902.1 mouse_genomes_project 2 107321391 107386734 - Gm14015 lincRNA lincRNA MGP_C3HHeJ_T0052358.1 MGP_C3HHeJ_G0025096.1 mouse_genomes_project 2 11755833 11867307 + MGP_C3HHeJ_P0052358 Slc39a12 protein_coding protein_coding MGP_C3HHeJ_T0052359.1 MGP_C3HHeJ_G0025096.1 mouse_genomes_project 2 11756024 11757052 + MGP_C3HHeJ_P0052359 Slc39a12 protein_coding protein_coding MGP_C3HHeJ_T0056481.1 MGP_C3HHeJ_G0026039.1 mouse_genomes_project 2 120201892 120206753 - MGP_C3HHeJ_P0056481 Ankrd63 protein_coding protein_coding MGP_C3HHeJ_T0013550.1 MGP_C3HHeJ_G0011654.1 mouse_genomes_project 2 104571642 104571884 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057569.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138036015 138123919 + Plcb4 protein_coding processed_transcript MGP_C3HHeJ_T0057570.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138036558 138124006 + Plcb4 protein_coding processed_transcript MGP_C3HHeJ_T0057571.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138036619 138259712 + Plcb4 protein_coding retained_intron MGP_C3HHeJ_T0057572.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138036715 138367730 + MGP_C3HHeJ_P0057572 Plcb4 protein_coding protein_coding MGP_C3HHeJ_T0057573.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138122997 138294097 + Plcb4 protein_coding retained_intron MGP_C3HHeJ_T0057574.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138122997 138399466 + MGP_C3HHeJ_P0057574 Plcb4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057575.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138146600 138292024 + Plcb4 protein_coding processed_transcript MGP_C3HHeJ_T0057576.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138187498 138399265 + MGP_C3HHeJ_P0057576 Plcb4 protein_coding protein_coding MGP_C3HHeJ_T0057577.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138254667 138400801 + MGP_C3HHeJ_P0057577 Plcb4 protein_coding protein_coding MGP_C3HHeJ_T0057578.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138269584 138324018 + Plcb4 protein_coding processed_transcript MGP_C3HHeJ_T0057579.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138326784 138335065 + Plcb4 protein_coding processed_transcript MGP_C3HHeJ_T0057580.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138331182 138335018 + Plcb4 protein_coding processed_transcript MGP_C3HHeJ_T0057581.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138367745 138372908 + Plcb4 protein_coding processed_transcript MGP_C3HHeJ_T0057582.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138372587 138400792 + MGP_C3HHeJ_P0057582 Plcb4 protein_coding protein_coding MGP_C3HHeJ_T0057583.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138393426 138394240 + Plcb4 protein_coding processed_transcript MGP_C3HHeJ_T0055699.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91389998 91396448 + MGP_C3HHeJ_P0055699 Psmc3 protein_coding protein_coding MGP_C3HHeJ_T0055700.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91390044 91403423 + MGP_C3HHeJ_P0055700 Psmc3 protein_coding protein_coding MGP_C3HHeJ_T0055701.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91390084 91391925 + Psmc3 protein_coding processed_transcript MGP_C3HHeJ_T0055702.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91390089 91396448 + MGP_C3HHeJ_P0055702 Psmc3 protein_coding protein_coding MGP_C3HHeJ_T0055703.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91390267 91393835 + MGP_C3HHeJ_P0055703 Psmc3 protein_coding protein_coding MGP_C3HHeJ_T0055704.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91390290 91392986 + MGP_C3HHeJ_P0055704 Psmc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055705.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91390371 91391708 + Psmc3 protein_coding processed_transcript MGP_C3HHeJ_T0055706.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91390467 91391543 + Psmc3 protein_coding processed_transcript MGP_C3HHeJ_T0055707.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91390562 91391918 + Psmc3 protein_coding processed_transcript MGP_C3HHeJ_T0055708.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91394098 91396450 + Psmc3 protein_coding processed_transcript MGP_C3HHeJ_T0057321.1 MGP_C3HHeJ_G0026221.1 mouse_genomes_project 2 132579533 132580345 + MGP_C3HHeJ_P0057321 1700020A23Rik protein_coding protein_coding MGP_C3HHeJ_T0057322.1 MGP_C3HHeJ_G0026221.1 mouse_genomes_project 2 132579539 132580293 + MGP_C3HHeJ_P0057322 1700020A23Rik protein_coding protein_coding MGP_C3HHeJ_T0057323.1 MGP_C3HHeJ_G0026221.1 mouse_genomes_project 2 132579560 132580349 + MGP_C3HHeJ_P0057323 1700020A23Rik protein_coding protein_coding MGP_C3HHeJ_T0054675.1 MGP_C3HHeJ_G0025503.1 mouse_genomes_project 2 61518257 61595149 - MGP_C3HHeJ_P0054675 Fap protein_coding protein_coding MGP_C3HHeJ_T0054676.1 MGP_C3HHeJ_G0025503.1 mouse_genomes_project 2 61518427 61595054 - Fap protein_coding processed_transcript MGP_C3HHeJ_T0054677.1 MGP_C3HHeJ_G0025503.1 mouse_genomes_project 2 61518437 61520737 - MGP_C3HHeJ_P0054677 Fap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054678.1 MGP_C3HHeJ_G0025503.1 mouse_genomes_project 2 61518498 61594925 - MGP_C3HHeJ_P0054678 Fap protein_coding protein_coding MGP_C3HHeJ_T0054679.1 MGP_C3HHeJ_G0025503.1 mouse_genomes_project 2 61518498 61594925 - MGP_C3HHeJ_P0054679 Fap protein_coding protein_coding MGP_C3HHeJ_T0054680.1 MGP_C3HHeJ_G0025503.1 mouse_genomes_project 2 61518498 61594925 - MGP_C3HHeJ_P0054680 Fap protein_coding protein_coding MGP_C3HHeJ_T0054681.1 MGP_C3HHeJ_G0025503.1 mouse_genomes_project 2 61545853 61584311 - Fap protein_coding retained_intron MGP_C3HHeJ_T0054682.1 MGP_C3HHeJ_G0025503.1 mouse_genomes_project 2 61554287 61594997 - Fap protein_coding retained_intron MGP_C3HHeJ_T0054683.1 MGP_C3HHeJ_G0025503.1 mouse_genomes_project 2 61567658 61594634 - MGP_C3HHeJ_P0054683 Fap protein_coding protein_coding MGP_C3HHeJ_T0057654.1 MGP_C3HHeJ_G0026292.1 mouse_genomes_project 2 145274946 145566239 - MGP_C3HHeJ_P0057654 Kif16b protein_coding protein_coding MGP_C3HHeJ_T0057655.1 MGP_C3HHeJ_G0026292.1 mouse_genomes_project 2 145276183 145309100 - Kif16b protein_coding retained_intron MGP_C3HHeJ_T0057656.1 MGP_C3HHeJ_G0026292.1 mouse_genomes_project 2 145277230 145566079 - MGP_C3HHeJ_P0057656 Kif16b protein_coding unknown_likely_coding MGP_C3HHeJ_T0007198.1 MGP_C3HHeJ_G0005897.1 mouse_genomes_project 2 104101501 104112901 - BC016548 lincRNA lincRNA MGP_C3HHeJ_T0007199.1 MGP_C3HHeJ_G0005897.1 mouse_genomes_project 2 104107835 104112899 - BC016548 lincRNA lincRNA MGP_C3HHeJ_T0098393.1 MGP_C3HHeJ_G0036599.1 mouse_genomes_project 2 1301516 1303924 + Gm36988 sense_intronic sense_intronic MGP_C3HHeJ_T0058730.1 MGP_C3HHeJ_G0026545.1 mouse_genomes_project 2 167350156 167414792 + Pkig protein_coding retained_intron MGP_C3HHeJ_T0058731.1 MGP_C3HHeJ_G0026545.1 mouse_genomes_project 2 167350156 167417192 + MGP_C3HHeJ_P0058731 Pkig protein_coding protein_coding MGP_C3HHeJ_T0058732.1 MGP_C3HHeJ_G0026545.1 mouse_genomes_project 2 167350169 167417188 + MGP_C3HHeJ_P0058732 Pkig protein_coding protein_coding MGP_C3HHeJ_T0058733.1 MGP_C3HHeJ_G0026545.1 mouse_genomes_project 2 167350185 167416722 + MGP_C3HHeJ_P0058733 Pkig protein_coding protein_coding MGP_C3HHeJ_T0058734.1 MGP_C3HHeJ_G0026545.1 mouse_genomes_project 2 167350228 167412232 + MGP_C3HHeJ_P0058734 Pkig protein_coding protein_coding MGP_C3HHeJ_T0058735.1 MGP_C3HHeJ_G0026545.1 mouse_genomes_project 2 167350247 167416825 + MGP_C3HHeJ_P0058735 Pkig protein_coding protein_coding MGP_C3HHeJ_T0058736.1 MGP_C3HHeJ_G0026545.1 mouse_genomes_project 2 167350250 167416552 + MGP_C3HHeJ_P0058736 Pkig protein_coding protein_coding MGP_C3HHeJ_T0058737.1 MGP_C3HHeJ_G0026545.1 mouse_genomes_project 2 167353269 167416507 + MGP_C3HHeJ_P0058737 Pkig protein_coding protein_coding MGP_C3HHeJ_T0058738.1 MGP_C3HHeJ_G0026545.1 mouse_genomes_project 2 167385716 167417186 + MGP_C3HHeJ_P0058738 Pkig protein_coding protein_coding MGP_C3HHeJ_T0058000.1 MGP_C3HHeJ_G0026397.1 mouse_genomes_project 2 155935982 155985681 + MGP_C3HHeJ_P0058000 Tpx2 protein_coding protein_coding MGP_C3HHeJ_T0058001.1 MGP_C3HHeJ_G0026397.1 mouse_genomes_project 2 155935982 155985681 + MGP_C3HHeJ_P0058001 Tpx2 protein_coding protein_coding MGP_C3HHeJ_T0058002.1 MGP_C3HHeJ_G0026397.1 mouse_genomes_project 2 155935996 155985014 + MGP_C3HHeJ_P0058002 Tpx2 protein_coding protein_coding MGP_C3HHeJ_T0058003.1 MGP_C3HHeJ_G0026397.1 mouse_genomes_project 2 155936013 155985014 + MGP_C3HHeJ_P0058003 Tpx2 protein_coding protein_coding MGP_C3HHeJ_T0058004.1 MGP_C3HHeJ_G0026397.1 mouse_genomes_project 2 155936100 155944031 + Tpx2 protein_coding processed_transcript MGP_C3HHeJ_T0058005.1 MGP_C3HHeJ_G0026397.1 mouse_genomes_project 2 155959211 155971586 + Tpx2 protein_coding retained_intron MGP_C3HHeJ_T0058006.1 MGP_C3HHeJ_G0026397.1 mouse_genomes_project 2 155972788 155974890 + Tpx2 protein_coding retained_intron MGP_C3HHeJ_T0059196.1 MGP_C3HHeJ_G0026665.1 mouse_genomes_project 2 176688155 176689967 + MGP_C3HHeJ_P0059196 Fam209 protein_coding protein_coding MGP_C3HHeJ_T0057879.1 MGP_C3HHeJ_G0026355.1 mouse_genomes_project 2 153997406 154007622 - MGP_C3HHeJ_P0057879 protein_coding protein_coding MGP_C3HHeJ_T0057881.1 MGP_C3HHeJ_G0026355.1 mouse_genomes_project 2 153998478 154007586 - protein_coding processed_transcript MGP_C3HHeJ_T0052664.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22613465 22698772 + MGP_C3HHeJ_P0052664 Pnpla7 protein_coding protein_coding MGP_C3HHeJ_T0052665.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22613505 22698772 + MGP_C3HHeJ_P0052665 Pnpla7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052666.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22613520 22619665 + MGP_C3HHeJ_P0052666 Pnpla7 protein_coding protein_coding MGP_C3HHeJ_T0052667.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22613521 22634215 + MGP_C3HHeJ_P0052667 Pnpla7 protein_coding protein_coding MGP_C3HHeJ_T0052668.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22613533 22617733 + Pnpla7 protein_coding processed_transcript MGP_C3HHeJ_T0052669.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22613580 22683989 + Pnpla7 protein_coding retained_intron MGP_C3HHeJ_T0052670.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22619745 22626223 + Pnpla7 protein_coding processed_transcript MGP_C3HHeJ_T0052671.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22634569 22637575 + Pnpla7 protein_coding retained_intron MGP_C3HHeJ_T0052672.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22635051 22654577 + MGP_C3HHeJ_P0052672 Pnpla7 protein_coding protein_coding MGP_C3HHeJ_T0052673.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22684163 22698772 + Pnpla7 protein_coding retained_intron MGP_C3HHeJ_T0052674.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22696066 22696805 + Pnpla7 protein_coding retained_intron MGP_C3HHeJ_T0052675.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22696380 22698483 + MGP_C3HHeJ_P0052675 Pnpla7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052676.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22696435 22697051 + Pnpla7 protein_coding retained_intron MGP_C3HHeJ_T0052677.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22696622 22697566 + Pnpla7 protein_coding retained_intron MGP_C3HHeJ_T0052678.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22697868 22698570 + Pnpla7 protein_coding retained_intron MGP_C3HHeJ_T0055082.1 MGP_C3HHeJ_G0025581.1 mouse_genomes_project 2 74220082 74222564 + MGP_C3HHeJ_P0055082 Hoxd9 protein_coding protein_coding MGP_C3HHeJ_T0052832.1 MGP_C3HHeJ_G0025179.1 mouse_genomes_project 2 23093948 23095865 + MGP_C3HHeJ_P0052832 Fut7 protein_coding protein_coding MGP_C3HHeJ_T0052833.1 MGP_C3HHeJ_G0025179.1 mouse_genomes_project 2 23094060 23097053 + MGP_C3HHeJ_P0052833 Fut7 protein_coding protein_coding MGP_C3HHeJ_T0052834.1 MGP_C3HHeJ_G0025179.1 mouse_genomes_project 2 23094234 23097056 + MGP_C3HHeJ_P0052834 Fut7 protein_coding protein_coding MGP_C3HHeJ_T0052835.1 MGP_C3HHeJ_G0025179.1 mouse_genomes_project 2 23094375 23097056 + MGP_C3HHeJ_P0052835 Fut7 protein_coding protein_coding MGP_C3HHeJ_T0052836.1 MGP_C3HHeJ_G0025179.1 mouse_genomes_project 2 23095329 23095773 + Fut7 protein_coding processed_transcript MGP_C3HHeJ_T0058104.1 MGP_C3HHeJ_G0026423.1 mouse_genomes_project 2 157184660 157192472 + MGP_C3HHeJ_P0058104 Bpifa2 protein_coding protein_coding MGP_C3HHeJ_T0058105.1 MGP_C3HHeJ_G0026423.1 mouse_genomes_project 2 157184671 157190837 + MGP_C3HHeJ_P0058105 Bpifa2 protein_coding protein_coding MGP_C3HHeJ_T0058106.1 MGP_C3HHeJ_G0026423.1 mouse_genomes_project 2 157190105 157192003 + Bpifa2 protein_coding retained_intron MGP_C3HHeJ_T0058107.1 MGP_C3HHeJ_G0026423.1 mouse_genomes_project 2 157190988 157192469 + Bpifa2 protein_coding retained_intron MGP_C3HHeJ_T0057815.1 MGP_C3HHeJ_G0026335.1 mouse_genomes_project 2 151655055 151661906 + MGP_C3HHeJ_P0057815 Cst8 protein_coding protein_coding MGP_C3HHeJ_T0057816.1 MGP_C3HHeJ_G0026335.1 mouse_genomes_project 2 151655104 151661906 + MGP_C3HHeJ_P0057816 Cst8 protein_coding protein_coding MGP_C3HHeJ_T0057817.1 MGP_C3HHeJ_G0026335.1 mouse_genomes_project 2 151655173 151661906 + Cst8 protein_coding processed_transcript MGP_C3HHeJ_T0007076.1 MGP_C3HHeJ_G0005799.1 mouse_genomes_project 2 23263254 23267923 + Gm26702 lincRNA lincRNA MGP_C3HHeJ_T0055803.1 MGP_C3HHeJ_G0025871.1 mouse_genomes_project 2 91819765 91841508 + Lrp4 protein_coding processed_transcript MGP_C3HHeJ_T0055804.1 MGP_C3HHeJ_G0025871.1 mouse_genomes_project 2 91819765 91880758 + MGP_C3HHeJ_P0055804 Lrp4 protein_coding protein_coding MGP_C3HHeJ_T0055805.1 MGP_C3HHeJ_G0025871.1 mouse_genomes_project 2 91838476 91843092 + Lrp4 protein_coding processed_transcript MGP_C3HHeJ_T0055806.1 MGP_C3HHeJ_G0025871.1 mouse_genomes_project 2 91838539 91841063 + Lrp4 protein_coding processed_transcript MGP_C3HHeJ_T0101928.1 MGP_C3HHeJ_G0039893.1 mouse_genomes_project 2 141355125 141355710 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100455.1 MGP_C3HHeJ_G0038649.1 mouse_genomes_project 2 52928150 52928283 + Gm22298 snoRNA snoRNA MGP_C3HHeJ_T0057476.1 MGP_C3HHeJ_G0026252.1 mouse_genomes_project 2 134107283 134113329 - MGP_C3HHeJ_P0057476 Erv3 protein_coding protein_coding MGP_C3HHeJ_T0098280.1 MGP_C3HHeJ_G0036492.1 mouse_genomes_project 2 50203093 50203223 - Gm23505 scaRNA scaRNA MGP_C3HHeJ_T0053641.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29158033 29225530 + MGP_C3HHeJ_P0053641 Gpr107 protein_coding protein_coding MGP_C3HHeJ_T0053642.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29158256 29174878 + Gpr107 protein_coding retained_intron MGP_C3HHeJ_T0053643.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29158274 29197801 + Gpr107 protein_coding retained_intron MGP_C3HHeJ_T0053644.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29158274 29161527 + Gpr107 protein_coding retained_intron MGP_C3HHeJ_T0053645.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29177988 29190539 + Gpr107 protein_coding processed_transcript MGP_C3HHeJ_T0053646.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29190964 29216215 + Gpr107 protein_coding retained_intron MGP_C3HHeJ_T0053647.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29191294 29194438 + Gpr107 protein_coding processed_transcript MGP_C3HHeJ_T0053648.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29194456 29216397 + Gpr107 protein_coding retained_intron MGP_C3HHeJ_T0053649.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29203948 29214764 + Gpr107 protein_coding processed_transcript MGP_C3HHeJ_T0053650.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29213688 29217119 + Gpr107 protein_coding retained_intron MGP_C3HHeJ_T0053651.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29217156 29221623 + Gpr107 protein_coding retained_intron MGP_C3HHeJ_T0058467.1 MGP_C3HHeJ_G0026488.1 mouse_genomes_project 2 160221583 160236366 - MGP_C3HHeJ_P0058467 Sla2 protein_coding protein_coding MGP_C3HHeJ_T0058469.1 MGP_C3HHeJ_G0026488.1 mouse_genomes_project 2 160222048 160236480 - MGP_C3HHeJ_P0058469 Sla2 protein_coding protein_coding MGP_C3HHeJ_T0007075.1 MGP_C3HHeJ_G0005798.1 mouse_genomes_project 2 22978508 22988718 - lincRNA lincRNA MGP_C3HHeJ_T0058130.1 MGP_C3HHeJ_G0026432.1 mouse_genomes_project 2 157567860 157607843 - MGP_C3HHeJ_P0058130 Snta1 protein_coding protein_coding MGP_C3HHeJ_T0058131.1 MGP_C3HHeJ_G0026432.1 mouse_genomes_project 2 157567860 157607825 - MGP_C3HHeJ_P0058131 Snta1 protein_coding protein_coding MGP_C3HHeJ_T0058132.1 MGP_C3HHeJ_G0026432.1 mouse_genomes_project 2 157597918 157607724 - Snta1 protein_coding processed_transcript MGP_C3HHeJ_T0007111.1 MGP_C3HHeJ_G0005825.1 mouse_genomes_project 2 44290868 44295853 - Gm13467 lincRNA lincRNA MGP_C3HHeJ_T0056628.1 MGP_C3HHeJ_G0026075.1 mouse_genomes_project 2 121543868 121599829 + MGP_C3HHeJ_P0056628 Mapkbp1 protein_coding protein_coding MGP_C3HHeJ_T0056629.1 MGP_C3HHeJ_G0026075.1 mouse_genomes_project 2 121544223 121599823 + MGP_C3HHeJ_P0056629 Mapkbp1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0056630.1 MGP_C3HHeJ_G0026075.1 mouse_genomes_project 2 121583192 121584601 + Mapkbp1 protein_coding retained_intron MGP_C3HHeJ_T0056631.1 MGP_C3HHeJ_G0026075.1 mouse_genomes_project 2 121584549 121587126 + Mapkbp1 protein_coding retained_intron MGP_C3HHeJ_T0056632.1 MGP_C3HHeJ_G0026075.1 mouse_genomes_project 2 121594498 121595472 + Mapkbp1 protein_coding retained_intron MGP_C3HHeJ_T0010330.1 MGP_C3HHeJ_G0008463.1 mouse_genomes_project 2 55682851 55682948 + Mir195b miRNA miRNA MGP_C3HHeJ_T0097894.1 MGP_C3HHeJ_G0036106.1 mouse_genomes_project 2 91249723 91249996 + pseudogene pseudogene MGP_C3HHeJ_T0056308.1 MGP_C3HHeJ_G0025969.1 mouse_genomes_project 2 112040796 112057992 - MGP_C3HHeJ_P0056308 Gm13941 protein_coding protein_coding MGP_C3HHeJ_T0013506.1 MGP_C3HHeJ_G0011610.1 mouse_genomes_project 2 87620794 87621087 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007051.1 MGP_C3HHeJ_G0005781.1 mouse_genomes_project 2 6519130 6577345 + Gm13219 lincRNA lincRNA MGP_C3HHeJ_T0007052.1 MGP_C3HHeJ_G0005781.1 mouse_genomes_project 2 6519189 6618469 + Gm13219 lincRNA lincRNA MGP_C3HHeJ_T0007053.1 MGP_C3HHeJ_G0005781.1 mouse_genomes_project 2 6519219 6578706 + Gm13219 lincRNA lincRNA MGP_C3HHeJ_T0055911.1 MGP_C3HHeJ_G0025886.1 mouse_genomes_project 2 92803521 92810060 + Pex16 protein_coding processed_transcript MGP_C3HHeJ_T0055912.1 MGP_C3HHeJ_G0025886.1 mouse_genomes_project 2 92804151 92810061 + MGP_C3HHeJ_P0055912 Pex16 protein_coding protein_coding MGP_C3HHeJ_T0055913.1 MGP_C3HHeJ_G0025886.1 mouse_genomes_project 2 92804338 92808166 + Pex16 protein_coding processed_transcript MGP_C3HHeJ_T0055914.1 MGP_C3HHeJ_G0025886.1 mouse_genomes_project 2 92804404 92805549 + Pex16 protein_coding processed_transcript MGP_C3HHeJ_T0052415.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15504831 15672324 + MGP_C3HHeJ_P0052415 Mllt10 protein_coding protein_coding MGP_C3HHeJ_T0052416.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15513983 15575582 + Mllt10 protein_coding processed_transcript MGP_C3HHeJ_T0052417.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15514225 15672325 + MGP_C3HHeJ_P0052417 Mllt10 protein_coding protein_coding MGP_C3HHeJ_T0052418.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15514273 15579352 + Mllt10 protein_coding processed_transcript MGP_C3HHeJ_T0052419.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15514276 15670907 + MGP_C3HHeJ_P0052419 Mllt10 protein_coding protein_coding MGP_C3HHeJ_T0052420.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15514394 15577046 + Mllt10 protein_coding processed_transcript MGP_C3HHeJ_T0052421.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15514423 15560627 + Mllt10 protein_coding processed_transcript MGP_C3HHeJ_T0052422.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15514430 15514845 + Mllt10 protein_coding processed_transcript MGP_C3HHeJ_T0052423.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15533835 15667087 + MGP_C3HHeJ_P0052423 Mllt10 protein_coding protein_coding MGP_C3HHeJ_T0052424.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15576942 15616152 + Mllt10 protein_coding processed_transcript MGP_C3HHeJ_T0052425.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15626892 15647280 + Mllt10 protein_coding processed_transcript MGP_C3HHeJ_T0054887.1 MGP_C3HHeJ_G0025545.1 mouse_genomes_project 2 69927038 69940889 + MGP_C3HHeJ_P0054887 Gad1 protein_coding protein_coding MGP_C3HHeJ_T0054888.1 MGP_C3HHeJ_G0025545.1 mouse_genomes_project 2 69935700 69977976 + MGP_C3HHeJ_P0054888 Gad1 protein_coding protein_coding MGP_C3HHeJ_T0054889.1 MGP_C3HHeJ_G0025545.1 mouse_genomes_project 2 69935700 69962802 + MGP_C3HHeJ_P0054889 Gad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054890.1 MGP_C3HHeJ_G0025545.1 mouse_genomes_project 2 69935821 69950770 + Gad1 protein_coding retained_intron MGP_C3HHeJ_T0054891.1 MGP_C3HHeJ_G0025545.1 mouse_genomes_project 2 69935854 69958241 + MGP_C3HHeJ_P0054891 Gad1 protein_coding protein_coding MGP_C3HHeJ_T0054892.1 MGP_C3HHeJ_G0025545.1 mouse_genomes_project 2 69936556 69958762 + MGP_C3HHeJ_P0054892 Gad1 protein_coding protein_coding MGP_C3HHeJ_T0054893.1 MGP_C3HHeJ_G0025545.1 mouse_genomes_project 2 69937099 69959587 + MGP_C3HHeJ_P0054893 Gad1 protein_coding protein_coding MGP_C3HHeJ_T0054894.1 MGP_C3HHeJ_G0025545.1 mouse_genomes_project 2 69940034 69977974 + Gad1 protein_coding processed_transcript MGP_C3HHeJ_T0100512.1 MGP_C3HHeJ_G0038706.1 mouse_genomes_project 2 170966609 170966702 + Gm25878 snoRNA snoRNA MGP_C3HHeJ_T0101894.1 MGP_C3HHeJ_G0039859.1 mouse_genomes_project 2 85602813 85603501 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0055919.1 MGP_C3HHeJ_G0025888.1 mouse_genomes_project 2 92812519 92821569 - MGP_C3HHeJ_P0055919 Mapk8ip1 protein_coding protein_coding MGP_C3HHeJ_T0055920.1 MGP_C3HHeJ_G0025888.1 mouse_genomes_project 2 92812523 92830051 - MGP_C3HHeJ_P0055920 Mapk8ip1 protein_coding protein_coding MGP_C3HHeJ_T0055921.1 MGP_C3HHeJ_G0025888.1 mouse_genomes_project 2 92818739 92821570 - Mapk8ip1 protein_coding processed_transcript MGP_C3HHeJ_T0059636.1 MGP_C3HHeJ_G0026755.1 mouse_genomes_project 2 186482729 186489221 + MGP_C3HHeJ_P0059636 Polr3k protein_coding protein_coding MGP_C3HHeJ_T0059637.1 MGP_C3HHeJ_G0026755.1 mouse_genomes_project 2 186482752 186484602 + Polr3k protein_coding retained_intron MGP_C3HHeJ_T0007189.1 MGP_C3HHeJ_G0005890.1 mouse_genomes_project 2 96322899 96325410 + Gm13799 lincRNA lincRNA MGP_C3HHeJ_T0055115.1 MGP_C3HHeJ_G0025593.1 mouse_genomes_project 2 75567370 75571797 - MGP_C3HHeJ_P0055115 protein_coding protein_coding MGP_C3HHeJ_T0057282.1 MGP_C3HHeJ_G0026211.1 mouse_genomes_project 2 131958357 131987105 + MGP_C3HHeJ_P0057282 protein_coding protein_coding MGP_C3HHeJ_T0057283.1 MGP_C3HHeJ_G0026211.1 mouse_genomes_project 2 131958357 131990417 + MGP_C3HHeJ_P0057283 protein_coding protein_coding MGP_C3HHeJ_T0013721.1 MGP_C3HHeJ_G0011825.1 mouse_genomes_project 2 172226908 172227338 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052030.1 MGP_C3HHeJ_G0025043.1 mouse_genomes_project 2 490064 503461 + Cdnf protein_coding processed_transcript MGP_C3HHeJ_T0052031.1 MGP_C3HHeJ_G0025043.1 mouse_genomes_project 2 490099 506015 + MGP_C3HHeJ_P0052031 Cdnf protein_coding protein_coding MGP_C3HHeJ_T0052032.1 MGP_C3HHeJ_G0025043.1 mouse_genomes_project 2 490918 503539 + Cdnf protein_coding processed_transcript MGP_C3HHeJ_T0004058.1 MGP_C3HHeJ_G0003587.1 mouse_genomes_project 2 156081447 156083060 - Gm14199 antisense antisense MGP_C3HHeJ_T0013570.1 MGP_C3HHeJ_G0011674.1 mouse_genomes_project 2 112576725 112625401 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100511.1 MGP_C3HHeJ_G0038705.1 mouse_genomes_project 2 168365551 168365682 + Gm24473 snoRNA snoRNA MGP_C3HHeJ_T0007044.1 MGP_C3HHeJ_G0005775.1 mouse_genomes_project 2 3291296 3292617 - Gm13383 lincRNA lincRNA MGP_C3HHeJ_T0004096.1 MGP_C3HHeJ_G0003616.1 mouse_genomes_project 2 170831713 170832483 + Gm17096 antisense antisense MGP_C3HHeJ_T0017574.1 MGP_C3HHeJ_G0015198.1 mouse_genomes_project 2 86848638 86849957 - Gm13723 processed_transcript processed_transcript MGP_C3HHeJ_T0059228.1 MGP_C3HHeJ_G0026676.1 mouse_genomes_project 2 177873463 177883196 - MGP_C3HHeJ_P0059228 Ankrd60 protein_coding protein_coding MGP_C3HHeJ_T0059229.1 MGP_C3HHeJ_G0026676.1 mouse_genomes_project 2 177873501 177883029 - MGP_C3HHeJ_P0059229 Ankrd60 protein_coding protein_coding MGP_C3HHeJ_T0059230.1 MGP_C3HHeJ_G0026676.1 mouse_genomes_project 2 177877182 177883104 - Ankrd60 protein_coding processed_transcript MGP_C3HHeJ_T0007304.1 MGP_C3HHeJ_G0005985.1 mouse_genomes_project 2 169811285 169823080 - Gm11464 lincRNA lincRNA MGP_C3HHeJ_T0017511.1 MGP_C3HHeJ_G0015157.1 mouse_genomes_project 2 11428862 11432465 - Stamos processed_transcript antisense MGP_C3HHeJ_T0017512.1 MGP_C3HHeJ_G0015157.1 mouse_genomes_project 2 11431018 11432379 - Stamos processed_transcript retained_intron MGP_C3HHeJ_T0054990.1 MGP_C3HHeJ_G0025561.1 mouse_genomes_project 2 71743962 71902990 + MGP_C3HHeJ_P0054990 Zak protein_coding protein_coding MGP_C3HHeJ_T0054991.1 MGP_C3HHeJ_G0025561.1 mouse_genomes_project 2 71744053 71867610 + MGP_C3HHeJ_P0054991 Zak protein_coding protein_coding MGP_C3HHeJ_T0054992.1 MGP_C3HHeJ_G0025561.1 mouse_genomes_project 2 71744089 71859350 + Zak protein_coding retained_intron MGP_C3HHeJ_T0054993.1 MGP_C3HHeJ_G0025561.1 mouse_genomes_project 2 71744102 71849956 + Zak protein_coding retained_intron MGP_C3HHeJ_T0054994.1 MGP_C3HHeJ_G0025561.1 mouse_genomes_project 2 71744119 71825320 + Zak protein_coding retained_intron MGP_C3HHeJ_T0054995.1 MGP_C3HHeJ_G0025561.1 mouse_genomes_project 2 71757398 71816099 + MGP_C3HHeJ_P0054995 Zak protein_coding protein_coding MGP_C3HHeJ_T0057364.1 MGP_C3HHeJ_G0026234.1 mouse_genomes_project 2 132871228 132875676 - Slc4a11 protein_coding retained_intron MGP_C3HHeJ_T0057365.1 MGP_C3HHeJ_G0026234.1 mouse_genomes_project 2 132871228 132885282 - MGP_C3HHeJ_P0057365 Slc4a11 protein_coding protein_coding MGP_C3HHeJ_T0057366.1 MGP_C3HHeJ_G0026234.1 mouse_genomes_project 2 132873691 132885232 - Slc4a11 protein_coding retained_intron MGP_C3HHeJ_T0057367.1 MGP_C3HHeJ_G0026234.1 mouse_genomes_project 2 132878574 132879724 - Slc4a11 protein_coding retained_intron MGP_C3HHeJ_T0057368.1 MGP_C3HHeJ_G0026234.1 mouse_genomes_project 2 132879290 132885232 - MGP_C3HHeJ_P0057368 Slc4a11 protein_coding protein_coding MGP_C3HHeJ_T0013627.1 MGP_C3HHeJ_G0011731.1 mouse_genomes_project 2 138807780 138808484 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101919.1 MGP_C3HHeJ_G0039884.1 mouse_genomes_project 2 90554311 90555236 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0000994.1 MGP_C3HHeJ_G0000931.1 mouse_genomes_project 2 8409134 8410063 + TEC TEC MGP_C3HHeJ_T0007305.1 MGP_C3HHeJ_G0005986.1 mouse_genomes_project 2 170038302 170039372 - Gm11466 lincRNA lincRNA MGP_C3HHeJ_T0011398.1 MGP_C3HHeJ_G0009531.1 mouse_genomes_project 2 34356966 34357109 - Gm27953 misc_RNA misc_RNA MGP_C3HHeJ_T0007345.1 MGP_C3HHeJ_G0006019.1 mouse_genomes_project 2 177696341 177697494 + Gm14642 lincRNA lincRNA MGP_C3HHeJ_T0007159.1 MGP_C3HHeJ_G0005866.1 mouse_genomes_project 2 75002646 75010769 + Gm13658 lincRNA lincRNA MGP_C3HHeJ_T0013292.1 MGP_C3HHeJ_G0011396.1 mouse_genomes_project 2 12800743 12801716 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013406.1 MGP_C3HHeJ_G0011510.1 mouse_genomes_project 2 54651543 54652955 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059105.1 MGP_C3HHeJ_G0026640.1 mouse_genomes_project 2 172162431 172188312 - MGP_C3HHeJ_P0059105 Adnp protein_coding protein_coding MGP_C3HHeJ_T0059106.1 MGP_C3HHeJ_G0026640.1 mouse_genomes_project 2 172162431 172188502 - MGP_C3HHeJ_P0059106 Adnp protein_coding protein_coding MGP_C3HHeJ_T0059108.1 MGP_C3HHeJ_G0026640.1 mouse_genomes_project 2 172166413 172188099 - Adnp protein_coding processed_transcript MGP_C3HHeJ_T0059109.1 MGP_C3HHeJ_G0026640.1 mouse_genomes_project 2 172185746 172188099 - Adnp protein_coding retained_intron MGP_C3HHeJ_T0054323.1 MGP_C3HHeJ_G0025447.1 mouse_genomes_project 2 42030490 42038560 + Kynu protein_coding processed_transcript MGP_C3HHeJ_T0054324.1 MGP_C3HHeJ_G0025447.1 mouse_genomes_project 2 42030490 42166654 + MGP_C3HHeJ_P0054324 Kynu protein_coding protein_coding MGP_C3HHeJ_T0054325.1 MGP_C3HHeJ_G0025447.1 mouse_genomes_project 2 42030503 42164152 + MGP_C3HHeJ_P0054325 Kynu protein_coding protein_coding MGP_C3HHeJ_T0054326.1 MGP_C3HHeJ_G0025447.1 mouse_genomes_project 2 42030515 42117458 + MGP_C3HHeJ_P0054326 Kynu protein_coding protein_coding MGP_C3HHeJ_T0054327.1 MGP_C3HHeJ_G0025447.1 mouse_genomes_project 2 42077447 42084027 + Kynu protein_coding processed_transcript MGP_C3HHeJ_T0054328.1 MGP_C3HHeJ_G0025447.1 mouse_genomes_project 2 42154327 42165360 + Kynu protein_coding processed_transcript MGP_C3HHeJ_T0013708.1 MGP_C3HHeJ_G0011812.1 mouse_genomes_project 2 166628791 166631543 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013356.1 MGP_C3HHeJ_G0011460.1 mouse_genomes_project 2 35955399 35955775 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054689.1 MGP_C3HHeJ_G0025505.1 mouse_genomes_project 2 61686075 61719279 + MGP_C3HHeJ_P0054689 Gca protein_coding protein_coding MGP_C3HHeJ_T0054690.1 MGP_C3HHeJ_G0025505.1 mouse_genomes_project 2 61709516 61715630 + Gca protein_coding processed_transcript MGP_C3HHeJ_T0055756.1 MGP_C3HHeJ_G0025865.1 mouse_genomes_project 2 91526441 91536977 - Nr1h3 protein_coding retained_intron MGP_C3HHeJ_T0055757.1 MGP_C3HHeJ_G0025865.1 mouse_genomes_project 2 91526441 91537068 - MGP_C3HHeJ_P0055757 Nr1h3 protein_coding protein_coding MGP_C3HHeJ_T0055758.1 MGP_C3HHeJ_G0025865.1 mouse_genomes_project 2 91526441 91536987 - MGP_C3HHeJ_P0055758 Nr1h3 protein_coding protein_coding MGP_C3HHeJ_T0055759.1 MGP_C3HHeJ_G0025865.1 mouse_genomes_project 2 91526472 91537103 - MGP_C3HHeJ_P0055759 Nr1h3 protein_coding protein_coding MGP_C3HHeJ_T0055760.1 MGP_C3HHeJ_G0025865.1 mouse_genomes_project 2 91526472 91536837 - MGP_C3HHeJ_P0055760 Nr1h3 protein_coding protein_coding MGP_C3HHeJ_T0055761.1 MGP_C3HHeJ_G0025865.1 mouse_genomes_project 2 91526586 91534698 - Nr1h3 protein_coding retained_intron MGP_C3HHeJ_T0055762.1 MGP_C3HHeJ_G0025865.1 mouse_genomes_project 2 91532457 91533208 - Nr1h3 protein_coding retained_intron MGP_C3HHeJ_T0055763.1 MGP_C3HHeJ_G0025865.1 mouse_genomes_project 2 91533984 91545858 - Nr1h3 protein_coding processed_transcript MGP_C3HHeJ_T0010269.1 MGP_C3HHeJ_G0008402.1 mouse_genomes_project 2 7711818 7711915 + Mir669a-2 miRNA miRNA MGP_C3HHeJ_T0098388.1 MGP_C3HHeJ_G0036594.1 mouse_genomes_project 2 1076311 1079661 + Gm10862 sense_intronic sense_intronic MGP_C3HHeJ_T0101921.1 MGP_C3HHeJ_G0039886.1 mouse_genomes_project 2 90746648 90761581 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010299.1 MGP_C3HHeJ_G0008432.1 mouse_genomes_project 2 24210238 24210299 - Mir6996 miRNA miRNA MGP_C3HHeJ_T0101922.1 MGP_C3HHeJ_G0039887.1 mouse_genomes_project 2 107992394 107992587 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101881.1 MGP_C3HHeJ_G0039846.1 mouse_genomes_project 2 35122692 35123274 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0056063.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103363642 103500106 + MGP_C3HHeJ_P0056063 Slc1a2 protein_coding protein_coding MGP_C3HHeJ_T0056064.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103364206 103444618 + Slc1a2 protein_coding processed_transcript MGP_C3HHeJ_T0056065.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103364241 103444615 + Slc1a2 protein_coding processed_transcript MGP_C3HHeJ_T0056066.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103364264 103487459 + MGP_C3HHeJ_P0056066 Slc1a2 protein_coding protein_coding MGP_C3HHeJ_T0056067.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103380323 103444615 + Slc1a2 protein_coding processed_transcript MGP_C3HHeJ_T0056068.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103414053 103448523 + MGP_C3HHeJ_P0056068 Slc1a2 protein_coding protein_coding MGP_C3HHeJ_T0056069.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103414135 103491092 + MGP_C3HHeJ_P0056069 Slc1a2 protein_coding protein_coding MGP_C3HHeJ_T0056070.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103414135 103487468 + MGP_C3HHeJ_P0056070 Slc1a2 protein_coding protein_coding MGP_C3HHeJ_T0056071.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103427654 103444611 + Slc1a2 protein_coding processed_transcript MGP_C3HHeJ_T0056072.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103462501 103486946 + MGP_C3HHeJ_P0056072 Slc1a2 protein_coding protein_coding MGP_C3HHeJ_T0056073.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103469600 103490906 + MGP_C3HHeJ_P0056073 Slc1a2 protein_coding protein_coding MGP_C3HHeJ_T0052333.1 MGP_C3HHeJ_G0025089.1 mouse_genomes_project 2 10849408 10887065 - MGP_C3HHeJ_P0052333 Trdmt1 protein_coding protein_coding MGP_C3HHeJ_T0052334.1 MGP_C3HHeJ_G0025089.1 mouse_genomes_project 2 10856508 10887047 - Trdmt1 protein_coding processed_transcript MGP_C3HHeJ_T0052335.1 MGP_C3HHeJ_G0025089.1 mouse_genomes_project 2 10864546 10887060 - MGP_C3HHeJ_P0052335 Trdmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013397.1 MGP_C3HHeJ_G0011501.1 mouse_genomes_project 2 51122855 51124840 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013467.1 MGP_C3HHeJ_G0011571.1 mouse_genomes_project 2 76963895 76964501 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055569.1 MGP_C3HHeJ_G0025803.1 mouse_genomes_project 2 89145293 89146232 - MGP_C3HHeJ_P0055569 Olfr1215 protein_coding protein_coding MGP_C3HHeJ_T0013314.1 MGP_C3HHeJ_G0011418.1 mouse_genomes_project 2 20214501 20214862 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056950.1 MGP_C3HHeJ_G0026131.1 mouse_genomes_project 2 124027161 124031821 - MGP_C3HHeJ_P0056950 Duoxa1 protein_coding protein_coding MGP_C3HHeJ_T0056951.1 MGP_C3HHeJ_G0026131.1 mouse_genomes_project 2 124028521 124038618 - MGP_C3HHeJ_P0056951 Duoxa1 protein_coding protein_coding MGP_C3HHeJ_T0056952.1 MGP_C3HHeJ_G0026131.1 mouse_genomes_project 2 124028524 124030684 - Duoxa1 protein_coding processed_transcript MGP_C3HHeJ_T0056953.1 MGP_C3HHeJ_G0026131.1 mouse_genomes_project 2 124028717 124031799 - MGP_C3HHeJ_P0056953 Duoxa1 protein_coding protein_coding MGP_C3HHeJ_T0056954.1 MGP_C3HHeJ_G0026131.1 mouse_genomes_project 2 124029741 124038655 - MGP_C3HHeJ_P0056954 Duoxa1 protein_coding protein_coding MGP_C3HHeJ_T0056955.1 MGP_C3HHeJ_G0026131.1 mouse_genomes_project 2 124030187 124038569 - MGP_C3HHeJ_P0056955 Duoxa1 protein_coding protein_coding MGP_C3HHeJ_T0056956.1 MGP_C3HHeJ_G0026131.1 mouse_genomes_project 2 124030566 124038576 - MGP_C3HHeJ_P0056956 Duoxa1 protein_coding protein_coding MGP_C3HHeJ_T0004055.1 MGP_C3HHeJ_G0003584.1 mouse_genomes_project 2 155132236 155134190 - AA387200 antisense antisense MGP_C3HHeJ_T0013662.1 MGP_C3HHeJ_G0011766.1 mouse_genomes_project 2 152213537 152215255 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013670.1 MGP_C3HHeJ_G0011774.1 mouse_genomes_project 2 154738390 154738841 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056305.1 MGP_C3HHeJ_G0025968.1 mouse_genomes_project 2 111679364 111701730 + MGP_C3HHeJ_P0056305 Muc15 protein_coding protein_coding MGP_C3HHeJ_T0056306.1 MGP_C3HHeJ_G0025968.1 mouse_genomes_project 2 111679635 111701730 + MGP_C3HHeJ_P0056306 Muc15 protein_coding protein_coding MGP_C3HHeJ_T0056307.1 MGP_C3HHeJ_G0025968.1 mouse_genomes_project 2 111679672 111699782 + MGP_C3HHeJ_P0056307 Muc15 protein_coding protein_coding MGP_C3HHeJ_T0013533.1 MGP_C3HHeJ_G0011637.1 mouse_genomes_project 2 98879475 98879647 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057678.1 MGP_C3HHeJ_G0026300.1 mouse_genomes_project 2 146946865 146969501 - MGP_C3HHeJ_P0057678 Snx5 protein_coding protein_coding MGP_C3HHeJ_T0057679.1 MGP_C3HHeJ_G0026300.1 mouse_genomes_project 2 146946865 146969167 - MGP_C3HHeJ_P0057679 Snx5 protein_coding protein_coding MGP_C3HHeJ_T0057680.1 MGP_C3HHeJ_G0026300.1 mouse_genomes_project 2 146947806 146951411 - Snx5 protein_coding processed_transcript MGP_C3HHeJ_T0057681.1 MGP_C3HHeJ_G0026300.1 mouse_genomes_project 2 146947858 146950383 - Snx5 protein_coding processed_transcript MGP_C3HHeJ_T0057682.1 MGP_C3HHeJ_G0026300.1 mouse_genomes_project 2 146951430 146953109 - Snx5 protein_coding processed_transcript MGP_C3HHeJ_T0057683.1 MGP_C3HHeJ_G0026300.1 mouse_genomes_project 2 146952396 146953088 - Snx5 protein_coding processed_transcript MGP_C3HHeJ_T0057684.1 MGP_C3HHeJ_G0026300.1 mouse_genomes_project 2 146952499 146959347 - Snx5 protein_coding processed_transcript MGP_C3HHeJ_T0057685.1 MGP_C3HHeJ_G0026300.1 mouse_genomes_project 2 146968048 146969379 - Snx5 protein_coding processed_transcript MGP_C3HHeJ_T0055116.1 MGP_C3HHeJ_G0025594.1 mouse_genomes_project 2 75581068 75597992 - MGP_C3HHeJ_P0055116 Pde11a protein_coding protein_coding MGP_C3HHeJ_T0055117.1 MGP_C3HHeJ_G0025594.1 mouse_genomes_project 2 75581827 75938899 - MGP_C3HHeJ_P0055117 Pde11a protein_coding protein_coding MGP_C3HHeJ_T0055118.1 MGP_C3HHeJ_G0025594.1 mouse_genomes_project 2 75620258 75817785 - MGP_C3HHeJ_P0055118 Pde11a protein_coding protein_coding MGP_C3HHeJ_T0058030.1 MGP_C3HHeJ_G0026403.1 mouse_genomes_project 2 156132867 156156894 + MGP_C3HHeJ_P0058030 Xkr7 protein_coding protein_coding MGP_C3HHeJ_T0053912.1 MGP_C3HHeJ_G0025357.1 mouse_genomes_project 2 30889190 30891002 + MGP_C3HHeJ_P0053912 Ptrh1 protein_coding protein_coding MGP_C3HHeJ_T0053913.1 MGP_C3HHeJ_G0025357.1 mouse_genomes_project 2 30889220 30890160 + Ptrh1 protein_coding processed_transcript MGP_C3HHeJ_T0053914.1 MGP_C3HHeJ_G0025357.1 mouse_genomes_project 2 30889269 30890854 + Ptrh1 protein_coding retained_intron MGP_C3HHeJ_T0056558.1 MGP_C3HHeJ_G0026057.1 mouse_genomes_project 2 120737829 120750753 - MGP_C3HHeJ_P0056558 Ppp1r14d protein_coding protein_coding MGP_C3HHeJ_T0056559.1 MGP_C3HHeJ_G0026057.1 mouse_genomes_project 2 120737850 120750712 - MGP_C3HHeJ_P0056559 Ppp1r14d protein_coding protein_coding MGP_C3HHeJ_T0056619.1 MGP_C3HHeJ_G0026074.1 mouse_genomes_project 2 121467182 121488853 + Mga protein_coding retained_intron MGP_C3HHeJ_T0056620.1 MGP_C3HHeJ_G0026074.1 mouse_genomes_project 2 121467194 121534655 + MGP_C3HHeJ_P0056620 Mga protein_coding protein_coding MGP_C3HHeJ_T0056621.1 MGP_C3HHeJ_G0026074.1 mouse_genomes_project 2 121467198 121497700 + Mga protein_coding processed_transcript MGP_C3HHeJ_T0056622.1 MGP_C3HHeJ_G0026074.1 mouse_genomes_project 2 121467255 121530527 + MGP_C3HHeJ_P0056622 Mga protein_coding protein_coding MGP_C3HHeJ_T0056623.1 MGP_C3HHeJ_G0026074.1 mouse_genomes_project 2 121492542 121495097 + Mga protein_coding retained_intron MGP_C3HHeJ_T0056624.1 MGP_C3HHeJ_G0026074.1 mouse_genomes_project 2 121510629 121516588 + Mga protein_coding processed_transcript MGP_C3HHeJ_T0056625.1 MGP_C3HHeJ_G0026074.1 mouse_genomes_project 2 121511133 121516381 + Mga protein_coding processed_transcript MGP_C3HHeJ_T0056626.1 MGP_C3HHeJ_G0026074.1 mouse_genomes_project 2 121528051 121535055 + Mga protein_coding processed_transcript MGP_C3HHeJ_T0056627.1 MGP_C3HHeJ_G0026074.1 mouse_genomes_project 2 121530137 121531955 + Mga protein_coding retained_intron MGP_C3HHeJ_T0059431.1 MGP_C3HHeJ_G0026724.1 mouse_genomes_project 2 185589008 185618713 + MGP_C3HHeJ_P0059431 Col20a1 protein_coding protein_coding MGP_C3HHeJ_T0059432.1 MGP_C3HHeJ_G0026724.1 mouse_genomes_project 2 185589008 185619925 + MGP_C3HHeJ_P0059432 Col20a1 protein_coding protein_coding MGP_C3HHeJ_T0059433.1 MGP_C3HHeJ_G0026724.1 mouse_genomes_project 2 185591542 185619930 + MGP_C3HHeJ_P0059433 Col20a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0059434.1 MGP_C3HHeJ_G0026724.1 mouse_genomes_project 2 185602876 185605863 + MGP_C3HHeJ_P0059434 Col20a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059435.1 MGP_C3HHeJ_G0026724.1 mouse_genomes_project 2 185615645 185619925 + MGP_C3HHeJ_P0059435 Col20a1 protein_coding protein_coding MGP_C3HHeJ_T0059605.1 MGP_C3HHeJ_G0026751.1 mouse_genomes_project 2 186313120 186314770 - MGP_C3HHeJ_P0059605 Lkaaear1 protein_coding protein_coding MGP_C3HHeJ_T0059606.1 MGP_C3HHeJ_G0026751.1 mouse_genomes_project 2 186313123 186313744 - MGP_C3HHeJ_P0059606 Lkaaear1 protein_coding protein_coding MGP_C3HHeJ_T0098100.1 MGP_C3HHeJ_G0036312.1 mouse_genomes_project 2 27340580 27340715 + Gm24976 rRNA rRNA MGP_C3HHeJ_T0052117.1 MGP_C3HHeJ_G0025058.1 mouse_genomes_project 2 2897897 2898752 - Gm13199 protein_coding processed_transcript MGP_C3HHeJ_T0052118.1 MGP_C3HHeJ_G0025058.1 mouse_genomes_project 2 2897898 2898741 - MGP_C3HHeJ_P0052118 Gm13199 protein_coding protein_coding MGP_C3HHeJ_T0101173.1 MGP_C3HHeJ_G0039322.1 mouse_genomes_project 2 51525742 51526127 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0004018.1 MGP_C3HHeJ_G0003558.1 mouse_genomes_project 2 133905570 133976064 - Gm14280 antisense antisense MGP_C3HHeJ_T0056947.1 MGP_C3HHeJ_G0026129.1 mouse_genomes_project 2 124004583 124023178 - MGP_C3HHeJ_P0056947 Duox2 protein_coding protein_coding MGP_C3HHeJ_T0056948.1 MGP_C3HHeJ_G0026129.1 mouse_genomes_project 2 124008038 124010920 - Duox2 protein_coding processed_transcript MGP_C3HHeJ_T0056944.1 MGP_C3HHeJ_G0026127.1 mouse_genomes_project 2 123908204 123926818 + MGP_C3HHeJ_P0056944 Terb2 protein_coding protein_coding MGP_C3HHeJ_T0056945.1 MGP_C3HHeJ_G0026127.1 mouse_genomes_project 2 123908406 123925382 + Terb2 protein_coding processed_transcript MGP_C3HHeJ_T0058552.1 MGP_C3HHeJ_G0026503.1 mouse_genomes_project 2 161349125 161380351 + MGP_C3HHeJ_P0058552 Vstm2l protein_coding protein_coding MGP_C3HHeJ_T0007081.1 MGP_C3HHeJ_G0005803.1 mouse_genomes_project 2 25879452 25880935 - Gm13371 lincRNA lincRNA MGP_C3HHeJ_T0001012.1 MGP_C3HHeJ_G0000949.1 mouse_genomes_project 2 11368593 11372557 - TEC TEC MGP_C3HHeJ_T0100468.1 MGP_C3HHeJ_G0038662.1 mouse_genomes_project 2 95120437 95120568 + Gm24318 snoRNA snoRNA MGP_C3HHeJ_T0010328.1 MGP_C3HHeJ_G0008461.1 mouse_genomes_project 2 43536748 43536826 - Mir5129 miRNA miRNA MGP_C3HHeJ_T0017695.1 MGP_C3HHeJ_G0015254.1 mouse_genomes_project 2 171484571 171548526 + Gm11476 processed_transcript processed_transcript MGP_C3HHeJ_T0058877.1 MGP_C3HHeJ_G0026598.1 mouse_genomes_project 2 168600962 168620051 - MGP_C3HHeJ_P0058877 Pltp protein_coding protein_coding MGP_C3HHeJ_T0058878.1 MGP_C3HHeJ_G0026598.1 mouse_genomes_project 2 168600962 168620129 - MGP_C3HHeJ_P0058878 Pltp protein_coding protein_coding MGP_C3HHeJ_T0058879.1 MGP_C3HHeJ_G0026598.1 mouse_genomes_project 2 168600962 168619960 - MGP_C3HHeJ_P0058879 Pltp protein_coding protein_coding MGP_C3HHeJ_T0058880.1 MGP_C3HHeJ_G0026598.1 mouse_genomes_project 2 168608550 168619214 - Pltp protein_coding retained_intron MGP_C3HHeJ_T0058881.1 MGP_C3HHeJ_G0026598.1 mouse_genomes_project 2 168614896 168620044 - Pltp protein_coding processed_transcript MGP_C3HHeJ_T0058882.1 MGP_C3HHeJ_G0026598.1 mouse_genomes_project 2 168615033 168620038 - MGP_C3HHeJ_P0058882 Pltp protein_coding protein_coding MGP_C3HHeJ_T0058883.1 MGP_C3HHeJ_G0026598.1 mouse_genomes_project 2 168616739 168620048 - MGP_C3HHeJ_P0058883 Pltp protein_coding protein_coding MGP_C3HHeJ_T0010363.1 MGP_C3HHeJ_G0008496.1 mouse_genomes_project 2 119725529 119725628 - Gm22800 miRNA miRNA MGP_C3HHeJ_T0053946.1 MGP_C3HHeJ_G0025363.1 mouse_genomes_project 2 31095595 31105078 - Slc2a8 protein_coding retained_intron MGP_C3HHeJ_T0053947.1 MGP_C3HHeJ_G0025363.1 mouse_genomes_project 2 31095595 31105092 - MGP_C3HHeJ_P0053947 Slc2a8 protein_coding protein_coding MGP_C3HHeJ_T0053948.1 MGP_C3HHeJ_G0025363.1 mouse_genomes_project 2 31096190 31105027 - MGP_C3HHeJ_P0053948 Slc2a8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053949.1 MGP_C3HHeJ_G0025363.1 mouse_genomes_project 2 31096190 31105027 - MGP_C3HHeJ_P0053949 Slc2a8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053950.1 MGP_C3HHeJ_G0025363.1 mouse_genomes_project 2 31096190 31105027 - MGP_C3HHeJ_P0053950 Slc2a8 protein_coding protein_coding MGP_C3HHeJ_T0053951.1 MGP_C3HHeJ_G0025363.1 mouse_genomes_project 2 31098532 31105081 - MGP_C3HHeJ_P0053951 Slc2a8 protein_coding protein_coding MGP_C3HHeJ_T0053952.1 MGP_C3HHeJ_G0025363.1 mouse_genomes_project 2 31099516 31105029 - Slc2a8 protein_coding retained_intron MGP_C3HHeJ_T0053953.1 MGP_C3HHeJ_G0025363.1 mouse_genomes_project 2 31104495 31105093 - Slc2a8 protein_coding processed_transcript MGP_C3HHeJ_T0013526.1 MGP_C3HHeJ_G0011630.1 mouse_genomes_project 2 95091403 95092004 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058938.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169077144 169111258 - MGP_C3HHeJ_P0058938 Elmo2 protein_coding protein_coding MGP_C3HHeJ_T0058939.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169078268 169087428 - MGP_C3HHeJ_P0058939 Elmo2 protein_coding protein_coding MGP_C3HHeJ_T0058940.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169078268 169116911 - MGP_C3HHeJ_P0058940 Elmo2 protein_coding protein_coding MGP_C3HHeJ_T0058941.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169078268 169116911 - MGP_C3HHeJ_P0058941 Elmo2 protein_coding protein_coding MGP_C3HHeJ_T0058942.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169080225 169116911 - MGP_C3HHeJ_P0058942 Elmo2 protein_coding protein_coding MGP_C3HHeJ_T0058943.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169080230 169107335 - MGP_C3HHeJ_P0058943 Elmo2 protein_coding protein_coding MGP_C3HHeJ_T0058944.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169088729 169104738 - Elmo2 protein_coding processed_transcript MGP_C3HHeJ_T0058945.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169089118 169102179 - MGP_C3HHeJ_P0058945 Elmo2 protein_coding protein_coding MGP_C3HHeJ_T0058946.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169095140 169102069 - Elmo2 protein_coding retained_intron MGP_C3HHeJ_T0058947.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169099339 169106783 - MGP_C3HHeJ_P0058947 Elmo2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058948.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169102106 169107007 - MGP_C3HHeJ_P0058948 Elmo2 protein_coding protein_coding MGP_C3HHeJ_T0058949.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169106103 169116911 - MGP_C3HHeJ_P0058949 Elmo2 protein_coding protein_coding MGP_C3HHeJ_T0058197.1 MGP_C3HHeJ_G0026448.1 mouse_genomes_project 2 158507194 158521347 + Dynlrb1 protein_coding processed_transcript MGP_C3HHeJ_T0058198.1 MGP_C3HHeJ_G0026448.1 mouse_genomes_project 2 158507196 158521352 + MGP_C3HHeJ_P0058198 Dynlrb1 protein_coding protein_coding MGP_C3HHeJ_T0058199.1 MGP_C3HHeJ_G0026448.1 mouse_genomes_project 2 158507269 158521210 + MGP_C3HHeJ_P0058199 Dynlrb1 protein_coding protein_coding MGP_C3HHeJ_T0058200.1 MGP_C3HHeJ_G0026448.1 mouse_genomes_project 2 158507472 158521155 + Dynlrb1 protein_coding processed_transcript MGP_C3HHeJ_T0097891.1 MGP_C3HHeJ_G0036103.1 mouse_genomes_project 2 11986039 11986661 - pseudogene pseudogene MGP_C3HHeJ_T0057058.1 MGP_C3HHeJ_G0026156.1 mouse_genomes_project 2 128016935 128018381 + Fgf7 protein_coding processed_transcript MGP_C3HHeJ_T0057059.1 MGP_C3HHeJ_G0026156.1 mouse_genomes_project 2 128016935 128084566 + MGP_C3HHeJ_P0057059 Fgf7 protein_coding protein_coding MGP_C3HHeJ_T0057060.1 MGP_C3HHeJ_G0026156.1 mouse_genomes_project 2 128017250 128083902 + MGP_C3HHeJ_P0057060 Fgf7 protein_coding protein_coding MGP_C3HHeJ_T0058177.1 MGP_C3HHeJ_G0026445.1 mouse_genomes_project 2 158105622 158135928 - MGP_C3HHeJ_P0058177 Eif2s2 protein_coding protein_coding MGP_C3HHeJ_T0058178.1 MGP_C3HHeJ_G0026445.1 mouse_genomes_project 2 158105630 158135775 - MGP_C3HHeJ_P0058178 Eif2s2 protein_coding protein_coding MGP_C3HHeJ_T0058179.1 MGP_C3HHeJ_G0026445.1 mouse_genomes_project 2 158127313 158135824 - Eif2s2 protein_coding retained_intron MGP_C3HHeJ_T0058180.1 MGP_C3HHeJ_G0026445.1 mouse_genomes_project 2 158127345 158135788 - MGP_C3HHeJ_P0058180 Eif2s2 protein_coding protein_coding MGP_C3HHeJ_T0058181.1 MGP_C3HHeJ_G0026445.1 mouse_genomes_project 2 158127348 158135801 - Eif2s2 protein_coding retained_intron MGP_C3HHeJ_T0007060.1 MGP_C3HHeJ_G0005788.1 mouse_genomes_project 2 10004935 10014368 + Gm37565 lincRNA lincRNA MGP_C3HHeJ_T0010251.1 MGP_C3HHeJ_G0008384.1 mouse_genomes_project 2 7689930 7690014 + Mir466m miRNA miRNA MGP_C3HHeJ_T0007147.1 MGP_C3HHeJ_G0005856.1 mouse_genomes_project 2 73637328 73638747 - A630050E04Rik lincRNA lincRNA MGP_C3HHeJ_T0013710.1 MGP_C3HHeJ_G0011814.1 mouse_genomes_project 2 168386523 168386779 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003973.1 MGP_C3HHeJ_G0003527.1 mouse_genomes_project 2 105868049 105881418 - Wt1os antisense antisense MGP_C3HHeJ_T0003974.1 MGP_C3HHeJ_G0003527.1 mouse_genomes_project 2 105868376 105916443 - Wt1os antisense antisense MGP_C3HHeJ_T0003975.1 MGP_C3HHeJ_G0003527.1 mouse_genomes_project 2 105869426 105869635 - Wt1os antisense antisense MGP_C3HHeJ_T0003976.1 MGP_C3HHeJ_G0003527.1 mouse_genomes_project 2 105885138 105916336 - Wt1os antisense antisense MGP_C3HHeJ_T0007097.1 MGP_C3HHeJ_G0005815.1 mouse_genomes_project 2 32274398 32288446 - Gm38389 lincRNA lincRNA MGP_C3HHeJ_T0058741.1 MGP_C3HHeJ_G0026547.1 mouse_genomes_project 2 167506121 167514280 + Wisp2 protein_coding processed_transcript MGP_C3HHeJ_T0058742.1 MGP_C3HHeJ_G0026547.1 mouse_genomes_project 2 167506149 167518452 + MGP_C3HHeJ_P0058742 Wisp2 protein_coding protein_coding MGP_C3HHeJ_T0058626.1 MGP_C3HHeJ_G0026520.1 mouse_genomes_project 2 163928193 163931562 - MGP_C3HHeJ_P0058626 Mafb protein_coding protein_coding MGP_C3HHeJ_T0099198.1 MGP_C3HHeJ_G0037392.1 mouse_genomes_project 2 75250471 75250570 - Gm24996 snRNA snRNA MGP_C3HHeJ_T0003857.1 MGP_C3HHeJ_G0003444.1 mouse_genomes_project 2 24388032 24393704 + Snhg7os antisense antisense MGP_C3HHeJ_T0003858.1 MGP_C3HHeJ_G0003444.1 mouse_genomes_project 2 24391074 24393704 + Snhg7os antisense antisense MGP_C3HHeJ_T0003859.1 MGP_C3HHeJ_G0003444.1 mouse_genomes_project 2 24391648 24393704 + Snhg7os antisense antisense MGP_C3HHeJ_T0013659.1 MGP_C3HHeJ_G0011763.1 mouse_genomes_project 2 150501610 150502049 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055574.1 MGP_C3HHeJ_G0025808.1 mouse_genomes_project 2 89276849 89277785 - MGP_C3HHeJ_P0055574 Olfr1221 protein_coding protein_coding MGP_C3HHeJ_T0013399.1 MGP_C3HHeJ_G0011503.1 mouse_genomes_project 2 51396696 51397113 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010370.1 MGP_C3HHeJ_G0008503.1 mouse_genomes_project 2 129980787 129980913 + Gm22411 miRNA miRNA MGP_C3HHeJ_T0058480.1 MGP_C3HHeJ_G0026490.1 mouse_genomes_project 2 160367019 160378959 - MGP_C3HHeJ_P0058480 Dsn1 protein_coding protein_coding MGP_C3HHeJ_T0058481.1 MGP_C3HHeJ_G0026490.1 mouse_genomes_project 2 160367031 160379038 - MGP_C3HHeJ_P0058481 Dsn1 protein_coding protein_coding MGP_C3HHeJ_T0058482.1 MGP_C3HHeJ_G0026490.1 mouse_genomes_project 2 160369478 160378914 - MGP_C3HHeJ_P0058482 Dsn1 protein_coding protein_coding MGP_C3HHeJ_T0058483.1 MGP_C3HHeJ_G0026490.1 mouse_genomes_project 2 160373439 160375140 - Dsn1 protein_coding retained_intron MGP_C3HHeJ_T0058484.1 MGP_C3HHeJ_G0026490.1 mouse_genomes_project 2 160374519 160378185 - MGP_C3HHeJ_P0058484 Dsn1 protein_coding protein_coding MGP_C3HHeJ_T0058485.1 MGP_C3HHeJ_G0026490.1 mouse_genomes_project 2 160377203 160378458 - MGP_C3HHeJ_P0058485 Dsn1 protein_coding protein_coding MGP_C3HHeJ_T0058246.1 MGP_C3HHeJ_G0026456.1 mouse_genomes_project 2 158898681 158921902 + MGP_C3HHeJ_P0058246 Myh7b protein_coding protein_coding MGP_C3HHeJ_T0058247.1 MGP_C3HHeJ_G0026456.1 mouse_genomes_project 2 158916617 158917976 + Myh7b protein_coding processed_transcript MGP_C3HHeJ_T0058248.1 MGP_C3HHeJ_G0026456.1 mouse_genomes_project 2 158921045 158921798 + Myh7b protein_coding retained_intron MGP_C3HHeJ_T0059187.1 MGP_C3HHeJ_G0026662.1 mouse_genomes_project 2 176605005 176641258 + MGP_C3HHeJ_P0059187 Cass4 protein_coding protein_coding MGP_C3HHeJ_T0059188.1 MGP_C3HHeJ_G0026662.1 mouse_genomes_project 2 176605032 176646817 + MGP_C3HHeJ_P0059188 Cass4 protein_coding protein_coding MGP_C3HHeJ_T0059189.1 MGP_C3HHeJ_G0026662.1 mouse_genomes_project 2 176605111 176645920 + MGP_C3HHeJ_P0059189 Cass4 protein_coding protein_coding MGP_C3HHeJ_T0059190.1 MGP_C3HHeJ_G0026662.1 mouse_genomes_project 2 176605181 176645703 + MGP_C3HHeJ_P0059190 Cass4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0053090.1 MGP_C3HHeJ_G0025227.1 mouse_genomes_project 2 24338868 24349983 - Agpat2 protein_coding processed_transcript MGP_C3HHeJ_T0053091.1 MGP_C3HHeJ_G0025227.1 mouse_genomes_project 2 24338868 24350104 - MGP_C3HHeJ_P0053091 Agpat2 protein_coding protein_coding MGP_C3HHeJ_T0053092.1 MGP_C3HHeJ_G0025227.1 mouse_genomes_project 2 24340314 24350189 - Agpat2 protein_coding processed_transcript MGP_C3HHeJ_T0053093.1 MGP_C3HHeJ_G0025227.1 mouse_genomes_project 2 24341929 24349488 - Agpat2 protein_coding processed_transcript MGP_C3HHeJ_T0053094.1 MGP_C3HHeJ_G0025227.1 mouse_genomes_project 2 24342252 24349698 - MGP_C3HHeJ_P0053094 Agpat2 protein_coding protein_coding MGP_C3HHeJ_T0056098.1 MGP_C3HHeJ_G0025924.1 mouse_genomes_project 2 104134592 104173190 + MGP_C3HHeJ_P0056098 Elf5 protein_coding protein_coding MGP_C3HHeJ_T0056099.1 MGP_C3HHeJ_G0025924.1 mouse_genomes_project 2 104134617 104167953 + Elf5 protein_coding retained_intron MGP_C3HHeJ_T0056100.1 MGP_C3HHeJ_G0025924.1 mouse_genomes_project 2 104146964 104173193 + MGP_C3HHeJ_P0056100 Elf5 protein_coding protein_coding MGP_C3HHeJ_T0056101.1 MGP_C3HHeJ_G0025924.1 mouse_genomes_project 2 104147028 104172051 + MGP_C3HHeJ_P0056101 Elf5 protein_coding protein_coding MGP_C3HHeJ_T0056102.1 MGP_C3HHeJ_G0025924.1 mouse_genomes_project 2 104147729 104171241 + MGP_C3HHeJ_P0056102 Elf5 protein_coding protein_coding MGP_C3HHeJ_T0056103.1 MGP_C3HHeJ_G0025924.1 mouse_genomes_project 2 104169542 104171225 + Elf5 protein_coding processed_transcript MGP_C3HHeJ_T0056104.1 MGP_C3HHeJ_G0025924.1 mouse_genomes_project 2 104170947 104172033 + Elf5 protein_coding processed_transcript MGP_C3HHeJ_T0000313.1 MGP_C3HHeJ_G0000263.1 mouse_genomes_project 2 20078912 20078982 - mt-Td Mt_tRNA Mt_tRNA MGP_C3HHeJ_T0004005.1 MGP_C3HHeJ_G0003550.1 mouse_genomes_project 2 130865330 130867839 - Gm14011 antisense antisense MGP_C3HHeJ_T0007253.1 MGP_C3HHeJ_G0005941.1 mouse_genomes_project 2 138022207 138029059 + lincRNA lincRNA MGP_C3HHeJ_T0058657.1 MGP_C3HHeJ_G0026526.1 mouse_genomes_project 2 164482254 164488135 - MGP_C3HHeJ_P0058657 Emilin3 protein_coding protein_coding MGP_C3HHeJ_T0058658.1 MGP_C3HHeJ_G0026526.1 mouse_genomes_project 2 164482255 164488146 - MGP_C3HHeJ_P0058658 Emilin3 protein_coding protein_coding MGP_C3HHeJ_T0013407.1 MGP_C3HHeJ_G0011511.1 mouse_genomes_project 2 54841543 54843950 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013624.1 MGP_C3HHeJ_G0011728.1 mouse_genomes_project 2 135496542 135497152 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054618.1 MGP_C3HHeJ_G0025495.1 mouse_genomes_project 2 59573145 59649965 - MGP_C3HHeJ_P0054618 Itgb6 protein_coding protein_coding MGP_C3HHeJ_T0054619.1 MGP_C3HHeJ_G0025495.1 mouse_genomes_project 2 59575025 59705392 - MGP_C3HHeJ_P0054619 Itgb6 protein_coding protein_coding MGP_C3HHeJ_T0054620.1 MGP_C3HHeJ_G0025495.1 mouse_genomes_project 2 59579039 59705392 - MGP_C3HHeJ_P0054620 Itgb6 protein_coding protein_coding MGP_C3HHeJ_T0054621.1 MGP_C3HHeJ_G0025495.1 mouse_genomes_project 2 59579933 59649980 - MGP_C3HHeJ_P0054621 Itgb6 protein_coding protein_coding MGP_C3HHeJ_T0054622.1 MGP_C3HHeJ_G0025495.1 mouse_genomes_project 2 59610844 59649947 - Itgb6 protein_coding processed_transcript MGP_C3HHeJ_T0054623.1 MGP_C3HHeJ_G0025495.1 mouse_genomes_project 2 59629449 59650008 - Itgb6 protein_coding processed_transcript MGP_C3HHeJ_T0054624.1 MGP_C3HHeJ_G0025495.1 mouse_genomes_project 2 59645501 59649957 - Itgb6 protein_coding processed_transcript MGP_C3HHeJ_T0054625.1 MGP_C3HHeJ_G0025495.1 mouse_genomes_project 2 59650897 59686088 - Itgb6 protein_coding processed_transcript MGP_C3HHeJ_T0054626.1 MGP_C3HHeJ_G0025495.1 mouse_genomes_project 2 59673921 59686065 - Itgb6 protein_coding processed_transcript MGP_C3HHeJ_T0011410.1 MGP_C3HHeJ_G0009543.1 mouse_genomes_project 2 105911721 105911981 - Gm27715 misc_RNA misc_RNA MGP_C3HHeJ_T0055087.1 MGP_C3HHeJ_G0025584.1 mouse_genomes_project 2 74234484 74251419 + Hoxd4 protein_coding processed_transcript MGP_C3HHeJ_T0055088.1 MGP_C3HHeJ_G0025584.1 mouse_genomes_project 2 74244528 74251711 + MGP_C3HHeJ_P0055088 Hoxd4 protein_coding protein_coding MGP_C3HHeJ_T0055090.1 MGP_C3HHeJ_G0025584.1 mouse_genomes_project 2 74249624 74251674 + MGP_C3HHeJ_P0055090 Hoxd4 protein_coding protein_coding MGP_C3HHeJ_T0013626.1 MGP_C3HHeJ_G0011730.1 mouse_genomes_project 2 138802644 138803286 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056596.1 MGP_C3HHeJ_G0026071.1 mouse_genomes_project 2 121304449 121313308 - MGP_C3HHeJ_P0056596 Ltk protein_coding protein_coding MGP_C3HHeJ_T0056597.1 MGP_C3HHeJ_G0026071.1 mouse_genomes_project 2 121304451 121311616 - Ltk protein_coding retained_intron MGP_C3HHeJ_T0056598.1 MGP_C3HHeJ_G0026071.1 mouse_genomes_project 2 121304451 121313344 - MGP_C3HHeJ_P0056598 Ltk protein_coding protein_coding MGP_C3HHeJ_T0056599.1 MGP_C3HHeJ_G0026071.1 mouse_genomes_project 2 121304455 121313444 - MGP_C3HHeJ_P0056599 Ltk protein_coding protein_coding MGP_C3HHeJ_T0056600.1 MGP_C3HHeJ_G0026071.1 mouse_genomes_project 2 121304457 121311620 - MGP_C3HHeJ_P0056600 Ltk protein_coding protein_coding MGP_C3HHeJ_T0056601.1 MGP_C3HHeJ_G0026071.1 mouse_genomes_project 2 121304459 121311614 - Ltk protein_coding retained_intron MGP_C3HHeJ_T0099189.1 MGP_C3HHeJ_G0037383.1 mouse_genomes_project 2 37382361 37382468 + Gm26127 snRNA snRNA MGP_C3HHeJ_T0003923.1 MGP_C3HHeJ_G0003496.1 mouse_genomes_project 2 68554236 68581105 + Gm13613 antisense antisense MGP_C3HHeJ_T0058764.1 MGP_C3HHeJ_G0026556.1 mouse_genomes_project 2 167890196 167891574 - MGP_C3HHeJ_P0058764 Wfdc12 protein_coding protein_coding MGP_C3HHeJ_T0055944.1 MGP_C3HHeJ_G0025895.1 mouse_genomes_project 2 93659598 93794445 - MGP_C3HHeJ_P0055944 Tspan18 protein_coding protein_coding MGP_C3HHeJ_T0055945.1 MGP_C3HHeJ_G0025895.1 mouse_genomes_project 2 93662097 93689954 - MGP_C3HHeJ_P0055945 Tspan18 protein_coding protein_coding MGP_C3HHeJ_T0055946.1 MGP_C3HHeJ_G0025895.1 mouse_genomes_project 2 93771273 93794463 - Tspan18 protein_coding processed_transcript MGP_C3HHeJ_T0055947.1 MGP_C3HHeJ_G0025895.1 mouse_genomes_project 2 93771273 93772518 - Tspan18 protein_coding processed_transcript MGP_C3HHeJ_T0058766.1 MGP_C3HHeJ_G0026558.1 mouse_genomes_project 2 167911535 167919570 - MGP_C3HHeJ_P0058766 Wfdc15b protein_coding protein_coding MGP_C3HHeJ_T0058767.1 MGP_C3HHeJ_G0026558.1 mouse_genomes_project 2 167911535 167919541 - MGP_C3HHeJ_P0058767 Wfdc15b protein_coding protein_coding MGP_C3HHeJ_T0058768.1 MGP_C3HHeJ_G0026558.1 mouse_genomes_project 2 167911536 167912665 - MGP_C3HHeJ_P0058768 Wfdc15b protein_coding protein_coding MGP_C3HHeJ_T0055449.1 MGP_C3HHeJ_G0025699.1 mouse_genomes_project 2 86299879 86300821 - MGP_C3HHeJ_P0055449 protein_coding protein_coding MGP_C3HHeJ_T0057544.1 MGP_C3HHeJ_G0026267.1 mouse_genomes_project 2 135131145 135151260 + MGP_C3HHeJ_P0057544 Crls1 protein_coding protein_coding MGP_C3HHeJ_T0057545.1 MGP_C3HHeJ_G0026267.1 mouse_genomes_project 2 135131155 135148616 + MGP_C3HHeJ_P0057545 Crls1 protein_coding protein_coding MGP_C3HHeJ_T0057546.1 MGP_C3HHeJ_G0026267.1 mouse_genomes_project 2 135131167 135151260 + MGP_C3HHeJ_P0057546 Crls1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057547.1 MGP_C3HHeJ_G0026267.1 mouse_genomes_project 2 135132213 135150917 + MGP_C3HHeJ_P0057547 Crls1 protein_coding protein_coding MGP_C3HHeJ_T0057548.1 MGP_C3HHeJ_G0026267.1 mouse_genomes_project 2 135132217 135150368 + MGP_C3HHeJ_P0057548 Crls1 protein_coding protein_coding MGP_C3HHeJ_T0017571.1 MGP_C3HHeJ_G0015195.1 mouse_genomes_project 2 77523718 77525433 - Gm13727 processed_transcript processed_transcript MGP_C3HHeJ_T0057734.1 MGP_C3HHeJ_G0026313.1 mouse_genomes_project 2 148539107 148577390 + MGP_C3HHeJ_P0057734 Rin2 protein_coding protein_coding MGP_C3HHeJ_T0057735.1 MGP_C3HHeJ_G0026313.1 mouse_genomes_project 2 148540351 148643698 + MGP_C3HHeJ_P0057735 Rin2 protein_coding protein_coding MGP_C3HHeJ_T0057736.1 MGP_C3HHeJ_G0026313.1 mouse_genomes_project 2 148540487 148643698 + MGP_C3HHeJ_P0057736 Rin2 protein_coding protein_coding MGP_C3HHeJ_T0057737.1 MGP_C3HHeJ_G0026313.1 mouse_genomes_project 2 148540533 148577792 + MGP_C3HHeJ_P0057737 Rin2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057738.1 MGP_C3HHeJ_G0026313.1 mouse_genomes_project 2 148577237 148599903 + Rin2 protein_coding processed_transcript MGP_C3HHeJ_T0057739.1 MGP_C3HHeJ_G0026313.1 mouse_genomes_project 2 148577376 148600172 + Rin2 protein_coding processed_transcript MGP_C3HHeJ_T0057740.1 MGP_C3HHeJ_G0026313.1 mouse_genomes_project 2 148618199 148635056 + Rin2 protein_coding processed_transcript MGP_C3HHeJ_T0058329.1 MGP_C3HHeJ_G0026471.1 mouse_genomes_project 2 159336402 159370501 - MGP_C3HHeJ_P0058329 Fer1l4 protein_coding protein_coding MGP_C3HHeJ_T0058330.1 MGP_C3HHeJ_G0026471.1 mouse_genomes_project 2 159336403 159342150 - Fer1l4 protein_coding retained_intron MGP_C3HHeJ_T0058331.1 MGP_C3HHeJ_G0026471.1 mouse_genomes_project 2 159336404 159354276 - Fer1l4 protein_coding retained_intron MGP_C3HHeJ_T0058332.1 MGP_C3HHeJ_G0026471.1 mouse_genomes_project 2 159346567 159348622 - MGP_C3HHeJ_P0058332 Fer1l4 protein_coding protein_coding MGP_C3HHeJ_T0058333.1 MGP_C3HHeJ_G0026471.1 mouse_genomes_project 2 159346716 159348624 - Fer1l4 protein_coding retained_intron MGP_C3HHeJ_T0058334.1 MGP_C3HHeJ_G0026471.1 mouse_genomes_project 2 159352650 159355011 - MGP_C3HHeJ_P0058334 Fer1l4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013584.1 MGP_C3HHeJ_G0011688.1 mouse_genomes_project 2 118649560 118650119 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010377.1 MGP_C3HHeJ_G0008510.1 mouse_genomes_project 2 141301837 141301916 + Mir1952 miRNA miRNA MGP_C3HHeJ_T0055595.1 MGP_C3HHeJ_G0025825.1 mouse_genomes_project 2 89656161 89657335 - MGP_C3HHeJ_P0055595 Olfr1242 protein_coding protein_coding MGP_C3HHeJ_T0055596.1 MGP_C3HHeJ_G0025825.1 mouse_genomes_project 2 89656257 89662481 - MGP_C3HHeJ_P0055596 Olfr1242 protein_coding protein_coding MGP_C3HHeJ_T0055597.1 MGP_C3HHeJ_G0025825.1 mouse_genomes_project 2 89657008 89661972 - Olfr1242 protein_coding processed_transcript MGP_C3HHeJ_T0003946.1 MGP_C3HHeJ_G0003510.1 mouse_genomes_project 2 74107304 74112770 + 4930445N08Rik antisense antisense MGP_C3HHeJ_T0054864.1 MGP_C3HHeJ_G0025540.1 mouse_genomes_project 2 69227167 69241770 - MGP_C3HHeJ_P0054864 Mettl5 protein_coding protein_coding MGP_C3HHeJ_T0054865.1 MGP_C3HHeJ_G0025540.1 mouse_genomes_project 2 69227183 69241752 - MGP_C3HHeJ_P0054865 Mettl5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054866.1 MGP_C3HHeJ_G0025540.1 mouse_genomes_project 2 69227187 69229800 - Mettl5 protein_coding retained_intron MGP_C3HHeJ_T0054867.1 MGP_C3HHeJ_G0025540.1 mouse_genomes_project 2 69233071 69241759 - Mettl5 protein_coding retained_intron MGP_C3HHeJ_T0055418.1 MGP_C3HHeJ_G0025669.1 mouse_genomes_project 2 85593662 85594592 - MGP_C3HHeJ_P0055418 Olfr1016 protein_coding protein_coding MGP_C3HHeJ_T0003899.1 MGP_C3HHeJ_G0003478.1 mouse_genomes_project 2 43628847 43631799 + Zeb2os antisense antisense MGP_C3HHeJ_T0003900.1 MGP_C3HHeJ_G0003478.1 mouse_genomes_project 2 43629977 43631799 + Zeb2os antisense antisense MGP_C3HHeJ_T0056946.1 MGP_C3HHeJ_G0026128.1 mouse_genomes_project 2 123959073 123990827 + MGP_C3HHeJ_P0056946 Sord protein_coding protein_coding MGP_C3HHeJ_T0013475.1 MGP_C3HHeJ_G0011579.1 mouse_genomes_project 2 79050785 79051316 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055414.1 MGP_C3HHeJ_G0025665.1 mouse_genomes_project 2 85513088 85514033 + MGP_C3HHeJ_P0055414 Olfr1009 protein_coding protein_coding MGP_C3HHeJ_T0056595.1 MGP_C3HHeJ_G0026070.1 mouse_genomes_project 2 121295451 121304393 + MGP_C3HHeJ_P0056595 Itpka protein_coding protein_coding MGP_C3HHeJ_T0013289.1 MGP_C3HHeJ_G0011393.1 mouse_genomes_project 2 12538216 12539300 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004091.1 MGP_C3HHeJ_G0003612.1 mouse_genomes_project 2 168678033 168686906 + Zfp335os antisense antisense MGP_C3HHeJ_T0004092.1 MGP_C3HHeJ_G0003612.1 mouse_genomes_project 2 168680724 168686516 + Zfp335os antisense antisense MGP_C3HHeJ_T0058460.1 MGP_C3HHeJ_G0026486.1 mouse_genomes_project 2 160184214 160203637 + MGP_C3HHeJ_P0058460 Tgif2 protein_coding protein_coding MGP_C3HHeJ_T0058461.1 MGP_C3HHeJ_G0026486.1 mouse_genomes_project 2 160185227 160196704 + MGP_C3HHeJ_P0058461 Tgif2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058462.1 MGP_C3HHeJ_G0026486.1 mouse_genomes_project 2 160198985 160202233 + Tgif2 protein_coding processed_transcript MGP_C3HHeJ_T0058463.1 MGP_C3HHeJ_G0026486.1 mouse_genomes_project 2 160199865 160202587 + Tgif2 protein_coding processed_transcript MGP_C3HHeJ_T0056453.1 MGP_C3HHeJ_G0026034.1 mouse_genomes_project 2 119868200 119907715 + MGP_C3HHeJ_P0056453 Eif2ak4 protein_coding protein_coding MGP_C3HHeJ_T0056454.1 MGP_C3HHeJ_G0026034.1 mouse_genomes_project 2 119868218 119958296 + MGP_C3HHeJ_P0056454 Eif2ak4 protein_coding protein_coding MGP_C3HHeJ_T0056455.1 MGP_C3HHeJ_G0026034.1 mouse_genomes_project 2 119868429 119958288 + MGP_C3HHeJ_P0056455 Eif2ak4 protein_coding protein_coding MGP_C3HHeJ_T0056456.1 MGP_C3HHeJ_G0026034.1 mouse_genomes_project 2 119868694 119958286 + MGP_C3HHeJ_P0056456 Eif2ak4 protein_coding protein_coding MGP_C3HHeJ_T0056457.1 MGP_C3HHeJ_G0026034.1 mouse_genomes_project 2 119868694 119958285 + MGP_C3HHeJ_P0056457 Eif2ak4 protein_coding protein_coding MGP_C3HHeJ_T0056458.1 MGP_C3HHeJ_G0026034.1 mouse_genomes_project 2 119918399 119933318 + MGP_C3HHeJ_P0056458 Eif2ak4 protein_coding protein_coding MGP_C3HHeJ_T0056459.1 MGP_C3HHeJ_G0026034.1 mouse_genomes_project 2 119938146 119943810 + Eif2ak4 protein_coding processed_transcript MGP_C3HHeJ_T0058681.1 MGP_C3HHeJ_G0026531.1 mouse_genomes_project 2 166584773 166617394 + L3mbtl1 protein_coding retained_intron MGP_C3HHeJ_T0058682.1 MGP_C3HHeJ_G0026531.1 mouse_genomes_project 2 166584775 166619835 + MGP_C3HHeJ_P0058682 L3mbtl1 protein_coding protein_coding MGP_C3HHeJ_T0058683.1 MGP_C3HHeJ_G0026531.1 mouse_genomes_project 2 166584776 166591312 + L3mbtl1 protein_coding processed_transcript MGP_C3HHeJ_T0058684.1 MGP_C3HHeJ_G0026531.1 mouse_genomes_project 2 166584776 166591384 + MGP_C3HHeJ_P0058684 L3mbtl1 protein_coding protein_coding MGP_C3HHeJ_T0058685.1 MGP_C3HHeJ_G0026531.1 mouse_genomes_project 2 166584801 166589670 + L3mbtl1 protein_coding processed_transcript MGP_C3HHeJ_T0058686.1 MGP_C3HHeJ_G0026531.1 mouse_genomes_project 2 166590429 166591975 + L3mbtl1 protein_coding processed_transcript MGP_C3HHeJ_T0058687.1 MGP_C3HHeJ_G0026531.1 mouse_genomes_project 2 166590429 166591975 + MGP_C3HHeJ_P0058687 L3mbtl1 protein_coding protein_coding MGP_C3HHeJ_T0052236.1 MGP_C3HHeJ_G0025077.1 mouse_genomes_project 2 8842037 8860695 - MGP_C3HHeJ_P0052236 Rbm17 protein_coding protein_coding MGP_C3HHeJ_T0052237.1 MGP_C3HHeJ_G0025077.1 mouse_genomes_project 2 8842039 8842591 - Rbm17 protein_coding retained_intron MGP_C3HHeJ_T0052238.1 MGP_C3HHeJ_G0025077.1 mouse_genomes_project 2 8842041 8843769 - Rbm17 protein_coding retained_intron MGP_C3HHeJ_T0052239.1 MGP_C3HHeJ_G0025077.1 mouse_genomes_project 2 8843991 8845582 - Rbm17 protein_coding retained_intron MGP_C3HHeJ_T0052240.1 MGP_C3HHeJ_G0025077.1 mouse_genomes_project 2 8845515 8847459 - Rbm17 protein_coding retained_intron MGP_C3HHeJ_T0052241.1 MGP_C3HHeJ_G0025077.1 mouse_genomes_project 2 8854114 8861618 - MGP_C3HHeJ_P0052241 Rbm17 protein_coding protein_coding MGP_C3HHeJ_T0013716.1 MGP_C3HHeJ_G0011820.1 mouse_genomes_project 2 170995228 170995784 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054164.1 MGP_C3HHeJ_G0025397.1 mouse_genomes_project 2 34509927 34531555 + MGP_C3HHeJ_P0054164 Ptgs1 protein_coding protein_coding MGP_C3HHeJ_T0054165.1 MGP_C3HHeJ_G0025397.1 mouse_genomes_project 2 34510057 34517344 + Ptgs1 protein_coding processed_transcript MGP_C3HHeJ_T0054166.1 MGP_C3HHeJ_G0025397.1 mouse_genomes_project 2 34515529 34531552 + Ptgs1 protein_coding processed_transcript MGP_C3HHeJ_T0054167.1 MGP_C3HHeJ_G0025397.1 mouse_genomes_project 2 34519993 34520749 + Ptgs1 protein_coding retained_intron MGP_C3HHeJ_T0054168.1 MGP_C3HHeJ_G0025397.1 mouse_genomes_project 2 34521755 34524486 + Ptgs1 protein_coding retained_intron MGP_C3HHeJ_T0004015.1 MGP_C3HHeJ_G0003555.1 mouse_genomes_project 2 131703426 131704448 - Gm14041 antisense antisense MGP_C3HHeJ_T0013388.1 MGP_C3HHeJ_G0011492.1 mouse_genomes_project 2 49215712 49215891 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010274.1 MGP_C3HHeJ_G0008407.1 mouse_genomes_project 2 7713621 7713717 + Mir466d miRNA miRNA MGP_C3HHeJ_T0056694.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122058609 122110713 + Capn3 protein_coding processed_transcript MGP_C3HHeJ_T0056695.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122058609 122110573 + Capn3 protein_coding processed_transcript MGP_C3HHeJ_T0056696.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122066441 122110713 + MGP_C3HHeJ_P0056696 Capn3 protein_coding protein_coding MGP_C3HHeJ_T0056697.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122066441 122110713 + MGP_C3HHeJ_P0056697 Capn3 protein_coding protein_coding MGP_C3HHeJ_T0056698.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122066735 122110299 + MGP_C3HHeJ_P0056698 Capn3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0056699.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122081642 122110713 + MGP_C3HHeJ_P0056699 Capn3 protein_coding protein_coding MGP_C3HHeJ_T0056700.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122081644 122110713 + MGP_C3HHeJ_P0056700 Capn3 protein_coding protein_coding MGP_C3HHeJ_T0056701.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122081694 122110713 + MGP_C3HHeJ_P0056701 Capn3 protein_coding protein_coding MGP_C3HHeJ_T0056702.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122081700 122110314 + Capn3 protein_coding processed_transcript MGP_C3HHeJ_T0056703.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122081700 122110713 + MGP_C3HHeJ_P0056703 Capn3 protein_coding protein_coding MGP_C3HHeJ_T0056704.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122090510 122090785 + Capn3 protein_coding processed_transcript MGP_C3HHeJ_T0056705.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122106048 122109017 + Capn3 protein_coding processed_transcript MGP_C3HHeJ_T0056706.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122107032 122108842 + Capn3 protein_coding processed_transcript MGP_C3HHeJ_T0056707.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122107106 122109195 + Capn3 protein_coding processed_transcript MGP_C3HHeJ_T0055430.1 MGP_C3HHeJ_G0025680.1 mouse_genomes_project 2 85870649 85871334 + MGP_C3HHeJ_P0055430 protein_coding protein_coding MGP_C3HHeJ_T0056049.1 MGP_C3HHeJ_G0025914.1 mouse_genomes_project 2 102571851 102582561 + Commd9 protein_coding processed_transcript MGP_C3HHeJ_T0056050.1 MGP_C3HHeJ_G0025914.1 mouse_genomes_project 2 102571857 102587267 + MGP_C3HHeJ_P0056050 Commd9 protein_coding protein_coding MGP_C3HHeJ_T0056051.1 MGP_C3HHeJ_G0025914.1 mouse_genomes_project 2 102571864 102582827 + Commd9 protein_coding retained_intron MGP_C3HHeJ_T0056052.1 MGP_C3HHeJ_G0025914.1 mouse_genomes_project 2 102571867 102581020 + Commd9 protein_coding retained_intron MGP_C3HHeJ_T0058922.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169064959 169066247 - Slc35c2 protein_coding retained_intron MGP_C3HHeJ_T0058923.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169064959 169076869 - MGP_C3HHeJ_P0058923 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058924.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169064959 169076941 - MGP_C3HHeJ_P0058924 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058925.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169064959 169076869 - MGP_C3HHeJ_P0058925 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058926.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169064959 169076983 - MGP_C3HHeJ_P0058926 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058927.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169064959 169076938 - MGP_C3HHeJ_P0058927 Slc35c2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058928.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169065857 169071337 - Slc35c2 protein_coding retained_intron MGP_C3HHeJ_T0058929.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169066759 169072482 - MGP_C3HHeJ_P0058929 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058930.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169066795 169072714 - MGP_C3HHeJ_P0058930 Slc35c2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058931.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169069022 169072714 - MGP_C3HHeJ_P0058931 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058932.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169069191 169076950 - MGP_C3HHeJ_P0058932 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058933.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169069191 169076949 - MGP_C3HHeJ_P0058933 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058934.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169069279 169075666 - MGP_C3HHeJ_P0058934 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058935.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169069284 169076941 - MGP_C3HHeJ_P0058935 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058936.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169069954 169076952 - Slc35c2 protein_coding retained_intron MGP_C3HHeJ_T0058937.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169071992 169076886 - MGP_C3HHeJ_P0058937 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0055436.1 MGP_C3HHeJ_G0025686.1 mouse_genomes_project 2 86013020 86013965 - MGP_C3HHeJ_P0055436 Olfr1044 protein_coding protein_coding MGP_C3HHeJ_T0058721.1 MGP_C3HHeJ_G0026543.1 mouse_genomes_project 2 167289527 167310343 + MGP_C3HHeJ_P0058721 Ttpal protein_coding protein_coding MGP_C3HHeJ_T0058722.1 MGP_C3HHeJ_G0026543.1 mouse_genomes_project 2 167289535 167307831 + MGP_C3HHeJ_P0058722 Ttpal protein_coding protein_coding MGP_C3HHeJ_T0058723.1 MGP_C3HHeJ_G0026543.1 mouse_genomes_project 2 167289562 167304184 + Ttpal protein_coding retained_intron MGP_C3HHeJ_T0058724.1 MGP_C3HHeJ_G0026543.1 mouse_genomes_project 2 167289562 167297998 + MGP_C3HHeJ_P0058724 Ttpal protein_coding protein_coding MGP_C3HHeJ_T0058725.1 MGP_C3HHeJ_G0026543.1 mouse_genomes_project 2 167289564 167310344 + MGP_C3HHeJ_P0058725 Ttpal protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058726.1 MGP_C3HHeJ_G0026543.1 mouse_genomes_project 2 167289776 167303228 + MGP_C3HHeJ_P0058726 Ttpal protein_coding protein_coding MGP_C3HHeJ_T0058727.1 MGP_C3HHeJ_G0026543.1 mouse_genomes_project 2 167302850 167306757 + Ttpal protein_coding retained_intron MGP_C3HHeJ_T0055475.1 MGP_C3HHeJ_G0025723.1 mouse_genomes_project 2 87090870 87091809 - MGP_C3HHeJ_P0055475 Olfr1109 protein_coding protein_coding MGP_C3HHeJ_T0003924.1 MGP_C3HHeJ_G0003497.1 mouse_genomes_project 2 69241883 69244879 + Mettl5os antisense antisense MGP_C3HHeJ_T0052877.1 MGP_C3HHeJ_G0025186.1 mouse_genomes_project 2 23183624 23188843 + MGP_C3HHeJ_P0052877 Fbxw5 protein_coding protein_coding MGP_C3HHeJ_T0052878.1 MGP_C3HHeJ_G0025186.1 mouse_genomes_project 2 23184187 23186922 + Fbxw5 protein_coding processed_transcript MGP_C3HHeJ_T0052879.1 MGP_C3HHeJ_G0025186.1 mouse_genomes_project 2 23184189 23187185 + Fbxw5 protein_coding processed_transcript MGP_C3HHeJ_T0052880.1 MGP_C3HHeJ_G0025186.1 mouse_genomes_project 2 23184230 23186558 + Fbxw5 protein_coding processed_transcript MGP_C3HHeJ_T0052881.1 MGP_C3HHeJ_G0025186.1 mouse_genomes_project 2 23184250 23186976 + Fbxw5 protein_coding processed_transcript MGP_C3HHeJ_T0052882.1 MGP_C3HHeJ_G0025186.1 mouse_genomes_project 2 23185929 23186956 + Fbxw5 protein_coding processed_transcript MGP_C3HHeJ_T0052883.1 MGP_C3HHeJ_G0025186.1 mouse_genomes_project 2 23186409 23187172 + Fbxw5 protein_coding processed_transcript MGP_C3HHeJ_T0052884.1 MGP_C3HHeJ_G0025186.1 mouse_genomes_project 2 23186597 23188206 + MGP_C3HHeJ_P0052884 Fbxw5 protein_coding protein_coding MGP_C3HHeJ_T0052885.1 MGP_C3HHeJ_G0025186.1 mouse_genomes_project 2 23187278 23188317 + Fbxw5 protein_coding processed_transcript MGP_C3HHeJ_T0053939.1 MGP_C3HHeJ_G0025362.1 mouse_genomes_project 2 31082843 31085781 + MGP_C3HHeJ_P0053939 Rpl12 protein_coding protein_coding MGP_C3HHeJ_T0053940.1 MGP_C3HHeJ_G0025362.1 mouse_genomes_project 2 31083004 31086630 + Rpl12 protein_coding retained_intron MGP_C3HHeJ_T0053941.1 MGP_C3HHeJ_G0025362.1 mouse_genomes_project 2 31083013 31085330 + Rpl12 protein_coding retained_intron MGP_C3HHeJ_T0053942.1 MGP_C3HHeJ_G0025362.1 mouse_genomes_project 2 31083016 31084223 + Rpl12 protein_coding retained_intron MGP_C3HHeJ_T0053943.1 MGP_C3HHeJ_G0025362.1 mouse_genomes_project 2 31083024 31084596 + Rpl12 protein_coding retained_intron MGP_C3HHeJ_T0053944.1 MGP_C3HHeJ_G0025362.1 mouse_genomes_project 2 31083024 31085328 + MGP_C3HHeJ_P0053944 Rpl12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053945.1 MGP_C3HHeJ_G0025362.1 mouse_genomes_project 2 31083550 31084351 + Rpl12 protein_coding retained_intron MGP_C3HHeJ_T0001055.1 MGP_C3HHeJ_G0000992.1 mouse_genomes_project 2 69896377 69897098 - TEC TEC MGP_C3HHeJ_T0056522.1 MGP_C3HHeJ_G0026049.1 mouse_genomes_project 2 120546328 120551304 + MGP_C3HHeJ_P0056522 Rpusd2 protein_coding protein_coding MGP_C3HHeJ_T0055471.1 MGP_C3HHeJ_G0025719.1 mouse_genomes_project 2 87004793 87005726 - MGP_C3HHeJ_P0055471 Olfr1104 protein_coding protein_coding MGP_C3HHeJ_T0100460.1 MGP_C3HHeJ_G0038654.1 mouse_genomes_project 2 61838894 61839030 - Gm22020 snoRNA snoRNA MGP_C3HHeJ_T0013293.1 MGP_C3HHeJ_G0011397.1 mouse_genomes_project 2 12898864 12899294 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011395.1 MGP_C3HHeJ_G0009528.1 mouse_genomes_project 2 21392774 21392949 + Gm26323 misc_RNA misc_RNA MGP_C3HHeJ_T0052318.1 MGP_C3HHeJ_G0025086.1 mouse_genomes_project 2 10321925 10330259 - MGP_C3HHeJ_P0052318 C1ql3 protein_coding protein_coding MGP_C3HHeJ_T0013610.1 MGP_C3HHeJ_G0011714.1 mouse_genomes_project 2 133196333 133196969 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054919.1 MGP_C3HHeJ_G0025550.1 mouse_genomes_project 2 70442712 70469717 + MGP_C3HHeJ_P0054919 Dcaf17 protein_coding protein_coding MGP_C3HHeJ_T0054920.1 MGP_C3HHeJ_G0025550.1 mouse_genomes_project 2 70443128 70479808 + MGP_C3HHeJ_P0054920 Dcaf17 protein_coding protein_coding MGP_C3HHeJ_T0054921.1 MGP_C3HHeJ_G0025550.1 mouse_genomes_project 2 70443142 70461168 + MGP_C3HHeJ_P0054921 Dcaf17 protein_coding protein_coding MGP_C3HHeJ_T0054922.1 MGP_C3HHeJ_G0025550.1 mouse_genomes_project 2 70443165 70483090 + MGP_C3HHeJ_P0054922 Dcaf17 protein_coding protein_coding MGP_C3HHeJ_T0054923.1 MGP_C3HHeJ_G0025550.1 mouse_genomes_project 2 70443168 70466461 + MGP_C3HHeJ_P0054923 Dcaf17 protein_coding protein_coding MGP_C3HHeJ_T0054924.1 MGP_C3HHeJ_G0025550.1 mouse_genomes_project 2 70443230 70473351 + MGP_C3HHeJ_P0054924 Dcaf17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054925.1 MGP_C3HHeJ_G0025550.1 mouse_genomes_project 2 70443236 70471743 + MGP_C3HHeJ_P0054925 Dcaf17 protein_coding protein_coding MGP_C3HHeJ_T0054926.1 MGP_C3HHeJ_G0025550.1 mouse_genomes_project 2 70458322 70465054 + Dcaf17 protein_coding processed_transcript MGP_C3HHeJ_T0052182.1 MGP_C3HHeJ_G0025068.1 mouse_genomes_project 2 7068263 7074763 - 9230102O04Rik protein_coding processed_transcript MGP_C3HHeJ_T0052183.1 MGP_C3HHeJ_G0025068.1 mouse_genomes_project 2 7068264 7069216 - MGP_C3HHeJ_P0052183 9230102O04Rik protein_coding protein_coding MGP_C3HHeJ_T0017669.1 MGP_C3HHeJ_G0015244.1 mouse_genomes_project 2 160042742 160049095 - 4930405A21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017670.1 MGP_C3HHeJ_G0015244.1 mouse_genomes_project 2 160044154 160049012 - 4930405A21Rik processed_transcript retained_intron MGP_C3HHeJ_T0003889.1 MGP_C3HHeJ_G0003469.1 mouse_genomes_project 2 33216742 33236172 + Gm13449 antisense antisense MGP_C3HHeJ_T0054516.1 MGP_C3HHeJ_G0025478.1 mouse_genomes_project 2 56981828 56990585 - MGP_C3HHeJ_P0054516 Ermn protein_coding protein_coding MGP_C3HHeJ_T0057292.1 MGP_C3HHeJ_G0026215.1 mouse_genomes_project 2 132359622 132438110 + MGP_C3HHeJ_P0057292 Tmc2 protein_coding protein_coding MGP_C3HHeJ_T0057293.1 MGP_C3HHeJ_G0026215.1 mouse_genomes_project 2 132362077 132437882 + MGP_C3HHeJ_P0057293 Tmc2 protein_coding protein_coding MGP_C3HHeJ_T0013392.1 MGP_C3HHeJ_G0011496.1 mouse_genomes_project 2 49929436 49930260 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057354.1 MGP_C3HHeJ_G0026232.1 mouse_genomes_project 2 132840781 132841524 - Ddrgk1 protein_coding retained_intron MGP_C3HHeJ_T0057355.1 MGP_C3HHeJ_G0026232.1 mouse_genomes_project 2 132840902 132851324 - MGP_C3HHeJ_P0057355 Ddrgk1 protein_coding protein_coding MGP_C3HHeJ_T0057356.1 MGP_C3HHeJ_G0026232.1 mouse_genomes_project 2 132840941 132844084 - Ddrgk1 protein_coding processed_transcript MGP_C3HHeJ_T0057357.1 MGP_C3HHeJ_G0026232.1 mouse_genomes_project 2 132841037 132848469 - MGP_C3HHeJ_P0057357 Ddrgk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057358.1 MGP_C3HHeJ_G0026232.1 mouse_genomes_project 2 132841945 132850547 - Ddrgk1 protein_coding processed_transcript MGP_C3HHeJ_T0099194.1 MGP_C3HHeJ_G0037388.1 mouse_genomes_project 2 62489270 62489377 - Gm23503 snRNA snRNA MGP_C3HHeJ_T0056192.1 MGP_C3HHeJ_G0025944.1 mouse_genomes_project 2 105609189 105628144 - MGP_C3HHeJ_P0056192 Prrg4 protein_coding protein_coding MGP_C3HHeJ_T0056193.1 MGP_C3HHeJ_G0025944.1 mouse_genomes_project 2 105617613 105627761 - MGP_C3HHeJ_P0056193 Prrg4 protein_coding protein_coding MGP_C3HHeJ_T0055527.1 MGP_C3HHeJ_G0025765.1 mouse_genomes_project 2 88088432 88089890 + MGP_C3HHeJ_P0055527 Olfr1158 protein_coding protein_coding MGP_C3HHeJ_T0003939.1 MGP_C3HHeJ_G0003505.1 mouse_genomes_project 2 72881239 72889628 + Gm13709 antisense antisense MGP_C3HHeJ_T0052202.1 MGP_C3HHeJ_G0025074.1 mouse_genomes_project 2 7592563 7662224 + MGP_C3HHeJ_P0052202 Sfmbt2 protein_coding protein_coding MGP_C3HHeJ_T0052203.1 MGP_C3HHeJ_G0025074.1 mouse_genomes_project 2 7592564 7662224 + MGP_C3HHeJ_P0052203 Sfmbt2 protein_coding protein_coding MGP_C3HHeJ_T0052204.1 MGP_C3HHeJ_G0025074.1 mouse_genomes_project 2 7592571 7627320 + Sfmbt2 protein_coding processed_transcript MGP_C3HHeJ_T0052205.1 MGP_C3HHeJ_G0025074.1 mouse_genomes_project 2 7595185 7662224 + MGP_C3HHeJ_P0052205 Sfmbt2 protein_coding protein_coding MGP_C3HHeJ_T0052206.1 MGP_C3HHeJ_G0025074.1 mouse_genomes_project 2 7595185 7802335 + MGP_C3HHeJ_P0052206 Sfmbt2 protein_coding protein_coding MGP_C3HHeJ_T0052207.1 MGP_C3HHeJ_G0025074.1 mouse_genomes_project 2 7595197 7616024 + Sfmbt2 protein_coding processed_transcript MGP_C3HHeJ_T0052208.1 MGP_C3HHeJ_G0025074.1 mouse_genomes_project 2 7595199 7802347 + MGP_C3HHeJ_P0052208 Sfmbt2 protein_coding protein_coding MGP_C3HHeJ_T0013564.1 MGP_C3HHeJ_G0011668.1 mouse_genomes_project 2 109502800 109503731 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101890.1 MGP_C3HHeJ_G0039855.1 mouse_genomes_project 2 85397819 85398749 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010305.1 MGP_C3HHeJ_G0008438.1 mouse_genomes_project 2 27356635 27356715 - Mir133c miRNA miRNA MGP_C3HHeJ_T0055560.1 MGP_C3HHeJ_G0025796.1 mouse_genomes_project 2 89042327 89043254 - MGP_C3HHeJ_P0055560 Olfr1208 protein_coding protein_coding MGP_C3HHeJ_T0013609.1 MGP_C3HHeJ_G0011713.1 mouse_genomes_project 2 133082485 133084076 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013447.1 MGP_C3HHeJ_G0011551.1 mouse_genomes_project 2 69995189 69995438 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055079.1 MGP_C3HHeJ_G0025579.1 mouse_genomes_project 2 74201918 74209385 + Hoxd11 protein_coding processed_transcript MGP_C3HHeJ_T0055080.1 MGP_C3HHeJ_G0025579.1 mouse_genomes_project 2 74204689 74206530 + MGP_C3HHeJ_P0055080 Hoxd11 protein_coding protein_coding MGP_C3HHeJ_T0007122.1 MGP_C3HHeJ_G0005835.1 mouse_genomes_project 2 51657284 51661086 - Gm26603 lincRNA lincRNA MGP_C3HHeJ_T0055507.1 MGP_C3HHeJ_G0025747.1 mouse_genomes_project 2 87747985 87750433 - MGP_C3HHeJ_P0055507 protein_coding protein_coding MGP_C3HHeJ_T0055166.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76619399 76786397 - MGP_C3HHeJ_P0055166 Ccdc141 protein_coding protein_coding MGP_C3HHeJ_T0055167.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76619492 76786379 - MGP_C3HHeJ_P0055167 Ccdc141 protein_coding protein_coding MGP_C3HHeJ_T0055168.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76621044 76629415 - MGP_C3HHeJ_P0055168 Ccdc141 protein_coding protein_coding MGP_C3HHeJ_T0055169.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76624548 76632194 - Ccdc141 protein_coding processed_transcript MGP_C3HHeJ_T0055170.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76632884 76640148 - Ccdc141 protein_coding retained_intron MGP_C3HHeJ_T0055171.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76640145 76656101 - Ccdc141 protein_coding retained_intron MGP_C3HHeJ_T0055172.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76640145 76656751 - MGP_C3HHeJ_P0055172 Ccdc141 protein_coding protein_coding MGP_C3HHeJ_T0055173.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76656991 76786398 - Ccdc141 protein_coding retained_intron MGP_C3HHeJ_T0055174.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76688227 76786372 - Ccdc141 protein_coding retained_intron MGP_C3HHeJ_T0055175.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76747615 76786362 - MGP_C3HHeJ_P0055175 Ccdc141 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055176.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76777742 76786338 - MGP_C3HHeJ_P0055176 Ccdc141 protein_coding protein_coding MGP_C3HHeJ_T0101391.1 MGP_C3HHeJ_G0039441.1 mouse_genomes_project 2 86847928 86848876 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0013495.1 MGP_C3HHeJ_G0011599.1 mouse_genomes_project 2 85607817 85608013 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013320.1 MGP_C3HHeJ_G0011424.1 mouse_genomes_project 2 21258402 21259306 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004065.1 MGP_C3HHeJ_G0003593.1 mouse_genomes_project 2 158881041 158881952 - Gm14257 antisense antisense MGP_C3HHeJ_T0004002.1 MGP_C3HHeJ_G0003547.1 mouse_genomes_project 2 127230782 127233412 + A530010F05Rik antisense antisense MGP_C3HHeJ_T0001018.1 MGP_C3HHeJ_G0000955.1 mouse_genomes_project 2 12091685 12094359 + TEC TEC MGP_C3HHeJ_T0010408.1 MGP_C3HHeJ_G0008541.1 mouse_genomes_project 2 184941805 184941882 + Mir1a-1 miRNA miRNA MGP_C3HHeJ_T0053921.1 MGP_C3HHeJ_G0025360.1 mouse_genomes_project 2 30993937 31046319 + MGP_C3HHeJ_P0053921 Fam129b protein_coding protein_coding MGP_C3HHeJ_T0053922.1 MGP_C3HHeJ_G0025360.1 mouse_genomes_project 2 31014366 31028671 + MGP_C3HHeJ_P0053922 Fam129b protein_coding protein_coding MGP_C3HHeJ_T0053923.1 MGP_C3HHeJ_G0025360.1 mouse_genomes_project 2 31029620 31031300 + Fam129b protein_coding retained_intron MGP_C3HHeJ_T0053924.1 MGP_C3HHeJ_G0025360.1 mouse_genomes_project 2 31034305 31040619 + Fam129b protein_coding processed_transcript MGP_C3HHeJ_T0053925.1 MGP_C3HHeJ_G0025360.1 mouse_genomes_project 2 31038235 31041702 + Fam129b protein_coding processed_transcript MGP_C3HHeJ_T0053926.1 MGP_C3HHeJ_G0025360.1 mouse_genomes_project 2 31041236 31043234 + Fam129b protein_coding processed_transcript MGP_C3HHeJ_T0003874.1 MGP_C3HHeJ_G0003457.1 mouse_genomes_project 2 29702665 29715511 - Gm13427 antisense antisense MGP_C3HHeJ_T0007254.1 MGP_C3HHeJ_G0005942.1 mouse_genomes_project 2 138062346 138071204 - Gm14211 lincRNA lincRNA MGP_C3HHeJ_T0053364.1 MGP_C3HHeJ_G0025281.1 mouse_genomes_project 2 27778313 27780505 + MGP_C3HHeJ_P0053364 Cercam protein_coding protein_coding MGP_C3HHeJ_T0053365.1 MGP_C3HHeJ_G0025281.1 mouse_genomes_project 2 27778643 27796071 + MGP_C3HHeJ_P0053365 Cercam protein_coding protein_coding MGP_C3HHeJ_T0053366.1 MGP_C3HHeJ_G0025281.1 mouse_genomes_project 2 27778693 27780459 + MGP_C3HHeJ_P0053366 Cercam protein_coding protein_coding MGP_C3HHeJ_T0053367.1 MGP_C3HHeJ_G0025281.1 mouse_genomes_project 2 27784752 27788699 + Cercam protein_coding retained_intron MGP_C3HHeJ_T0053368.1 MGP_C3HHeJ_G0025281.1 mouse_genomes_project 2 27785299 27793237 + Cercam protein_coding retained_intron MGP_C3HHeJ_T0057086.1 MGP_C3HHeJ_G0026162.1 mouse_genomes_project 2 128744505 128796336 + Usp8 protein_coding processed_transcript MGP_C3HHeJ_T0057087.1 MGP_C3HHeJ_G0026162.1 mouse_genomes_project 2 128744520 128796385 + MGP_C3HHeJ_P0057087 Usp8 protein_coding protein_coding MGP_C3HHeJ_T0057088.1 MGP_C3HHeJ_G0026162.1 mouse_genomes_project 2 128744537 128796378 + MGP_C3HHeJ_P0057088 Usp8 protein_coding protein_coding MGP_C3HHeJ_T0052915.1 MGP_C3HHeJ_G0025193.1 mouse_genomes_project 2 23298790 23307447 - MGP_C3HHeJ_P0052915 Ccdc183 protein_coding protein_coding MGP_C3HHeJ_T0052916.1 MGP_C3HHeJ_G0025193.1 mouse_genomes_project 2 23298848 23307428 - Ccdc183 protein_coding processed_transcript MGP_C3HHeJ_T0100500.1 MGP_C3HHeJ_G0038694.1 mouse_genomes_project 2 154301635 154301855 + Gm24199 snoRNA snoRNA MGP_C3HHeJ_T0010357.1 MGP_C3HHeJ_G0008490.1 mouse_genomes_project 2 105184935 105185015 - Mir1902 miRNA miRNA MGP_C3HHeJ_T0004102.1 MGP_C3HHeJ_G0003622.1 mouse_genomes_project 2 174612954 174626189 - Gm16796 antisense antisense MGP_C3HHeJ_T0007121.1 MGP_C3HHeJ_G0005834.1 mouse_genomes_project 2 50375969 50456048 - Gm13490 lincRNA lincRNA MGP_C3HHeJ_T0057854.1 MGP_C3HHeJ_G0026351.1 mouse_genomes_project 2 153744672 153790243 + MGP_C3HHeJ_P0057854 Pygb protein_coding protein_coding MGP_C3HHeJ_T0057855.1 MGP_C3HHeJ_G0026351.1 mouse_genomes_project 2 153746941 153771941 + Pygb protein_coding processed_transcript MGP_C3HHeJ_T0057856.1 MGP_C3HHeJ_G0026351.1 mouse_genomes_project 2 153773261 153775700 + Pygb protein_coding retained_intron MGP_C3HHeJ_T0057857.1 MGP_C3HHeJ_G0026351.1 mouse_genomes_project 2 153782091 153786958 + Pygb protein_coding retained_intron MGP_C3HHeJ_T0057858.1 MGP_C3HHeJ_G0026351.1 mouse_genomes_project 2 153786872 153789119 + Pygb protein_coding retained_intron MGP_C3HHeJ_T0099174.1 MGP_C3HHeJ_G0037368.1 mouse_genomes_project 2 4436520 4436617 + Gm24340 snRNA snRNA MGP_C3HHeJ_T0052656.1 MGP_C3HHeJ_G0025148.1 mouse_genomes_project 2 22581784 22595076 + MGP_C3HHeJ_P0052656 Zmynd19 protein_coding protein_coding MGP_C3HHeJ_T0001059.1 MGP_C3HHeJ_G0000996.1 mouse_genomes_project 2 104085234 104088639 - TEC TEC MGP_C3HHeJ_T0013266.1 MGP_C3HHeJ_G0011370.1 mouse_genomes_project 2 1028341 1029638 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057232.1 MGP_C3HHeJ_G0026196.1 mouse_genomes_project 2 130980979 131016134 + MGP_C3HHeJ_P0057232 Fbln7 protein_coding protein_coding MGP_C3HHeJ_T0057233.1 MGP_C3HHeJ_G0026196.1 mouse_genomes_project 2 130981941 131016130 + MGP_C3HHeJ_P0057233 Fbln7 protein_coding protein_coding MGP_C3HHeJ_T0013562.1 MGP_C3HHeJ_G0011666.1 mouse_genomes_project 2 107881511 107882521 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058190.1 MGP_C3HHeJ_G0026447.1 mouse_genomes_project 2 158388905 158394636 + Itch protein_coding retained_intron MGP_C3HHeJ_T0058191.1 MGP_C3HHeJ_G0026447.1 mouse_genomes_project 2 158388905 158435853 + Itch protein_coding retained_intron MGP_C3HHeJ_T0058192.1 MGP_C3HHeJ_G0026447.1 mouse_genomes_project 2 158388905 158493674 + MGP_C3HHeJ_P0058192 Itch protein_coding protein_coding MGP_C3HHeJ_T0058193.1 MGP_C3HHeJ_G0026447.1 mouse_genomes_project 2 158388920 158438698 + Itch protein_coding retained_intron MGP_C3HHeJ_T0058194.1 MGP_C3HHeJ_G0026447.1 mouse_genomes_project 2 158388927 158464273 + Itch protein_coding processed_transcript MGP_C3HHeJ_T0058195.1 MGP_C3HHeJ_G0026447.1 mouse_genomes_project 2 158388955 158493672 + MGP_C3HHeJ_P0058195 Itch protein_coding protein_coding MGP_C3HHeJ_T0058196.1 MGP_C3HHeJ_G0026447.1 mouse_genomes_project 2 158388957 158478537 + Itch protein_coding retained_intron MGP_C3HHeJ_T0055015.1 MGP_C3HHeJ_G0025567.1 mouse_genomes_project 2 72796416 72822919 - MGP_C3HHeJ_P0055015 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055016.1 MGP_C3HHeJ_G0025567.1 mouse_genomes_project 2 72816326 72822997 - protein_coding processed_transcript MGP_C3HHeJ_T0058013.1 MGP_C3HHeJ_G0026401.1 mouse_genomes_project 2 156053710 156101435 + MGP_C3HHeJ_P0058013 Ttll9 protein_coding protein_coding MGP_C3HHeJ_T0058014.1 MGP_C3HHeJ_G0026401.1 mouse_genomes_project 2 156053731 156097328 + MGP_C3HHeJ_P0058014 Ttll9 protein_coding protein_coding MGP_C3HHeJ_T0058015.1 MGP_C3HHeJ_G0026401.1 mouse_genomes_project 2 156053731 156097277 + MGP_C3HHeJ_P0058015 Ttll9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058016.1 MGP_C3HHeJ_G0026401.1 mouse_genomes_project 2 156053731 156097284 + MGP_C3HHeJ_P0058016 Ttll9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058017.1 MGP_C3HHeJ_G0026401.1 mouse_genomes_project 2 156053736 156101066 + MGP_C3HHeJ_P0058017 Ttll9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058018.1 MGP_C3HHeJ_G0026401.1 mouse_genomes_project 2 156063728 156101435 + MGP_C3HHeJ_P0058018 Ttll9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058019.1 MGP_C3HHeJ_G0026401.1 mouse_genomes_project 2 156065006 156075752 + MGP_C3HHeJ_P0058019 Ttll9 protein_coding protein_coding MGP_C3HHeJ_T0058020.1 MGP_C3HHeJ_G0026401.1 mouse_genomes_project 2 156080889 156092059 + Ttll9 protein_coding retained_intron MGP_C3HHeJ_T0058021.1 MGP_C3HHeJ_G0026401.1 mouse_genomes_project 2 156096886 156102652 + Ttll9 protein_coding retained_intron MGP_C3HHeJ_T0055517.1 MGP_C3HHeJ_G0025755.1 mouse_genomes_project 2 87901652 87902597 + MGP_C3HHeJ_P0055517 Olfr1143 protein_coding protein_coding MGP_C3HHeJ_T0007153.1 MGP_C3HHeJ_G0005861.1 mouse_genomes_project 2 74274964 74277049 - Haglr lincRNA lincRNA MGP_C3HHeJ_T0007154.1 MGP_C3HHeJ_G0005861.1 mouse_genomes_project 2 74276975 74288479 - Haglr lincRNA lincRNA MGP_C3HHeJ_T0003913.1 MGP_C3HHeJ_G0003487.1 mouse_genomes_project 2 64367145 64368065 + Gm13594 antisense antisense MGP_C3HHeJ_T0010384.1 MGP_C3HHeJ_G0008517.1 mouse_genomes_project 2 158626711 158626820 + Mir695 miRNA miRNA MGP_C3HHeJ_T0057802.1 MGP_C3HHeJ_G0026329.1 mouse_genomes_project 2 151547151 151559074 + MGP_C3HHeJ_P0057802 Gzf1 protein_coding protein_coding MGP_C3HHeJ_T0057803.1 MGP_C3HHeJ_G0026329.1 mouse_genomes_project 2 151547339 151550178 + MGP_C3HHeJ_P0057803 Gzf1 protein_coding protein_coding MGP_C3HHeJ_T0057804.1 MGP_C3HHeJ_G0026329.1 mouse_genomes_project 2 151550740 151556340 + Gzf1 protein_coding processed_transcript MGP_C3HHeJ_T0059181.1 MGP_C3HHeJ_G0026659.1 mouse_genomes_project 2 176555313 176566260 + MGP_C3HHeJ_P0059181 Fam210b protein_coding protein_coding MGP_C3HHeJ_T0056780.1 MGP_C3HHeJ_G0026098.1 mouse_genomes_project 2 122647665 122667089 - MGP_C3HHeJ_P0056780 Epb42 protein_coding protein_coding MGP_C3HHeJ_T0056781.1 MGP_C3HHeJ_G0026098.1 mouse_genomes_project 2 122647993 122657270 - Epb42 protein_coding processed_transcript MGP_C3HHeJ_T0056782.1 MGP_C3HHeJ_G0026098.1 mouse_genomes_project 2 122647993 122652585 - Epb42 protein_coding processed_transcript MGP_C3HHeJ_T0056783.1 MGP_C3HHeJ_G0026098.1 mouse_genomes_project 2 122649178 122651795 - Epb42 protein_coding retained_intron MGP_C3HHeJ_T0056784.1 MGP_C3HHeJ_G0026098.1 mouse_genomes_project 2 122653427 122666852 - MGP_C3HHeJ_P0056784 Epb42 protein_coding protein_coding MGP_C3HHeJ_T0056785.1 MGP_C3HHeJ_G0026098.1 mouse_genomes_project 2 122657716 122666698 - Epb42 protein_coding processed_transcript MGP_C3HHeJ_T0056786.1 MGP_C3HHeJ_G0026098.1 mouse_genomes_project 2 122663419 122666762 - Epb42 protein_coding processed_transcript MGP_C3HHeJ_T0055936.1 MGP_C3HHeJ_G0025894.1 mouse_genomes_project 2 93645415 93656771 + MGP_C3HHeJ_P0055936 Trp53i11 protein_coding protein_coding MGP_C3HHeJ_T0055937.1 MGP_C3HHeJ_G0025894.1 mouse_genomes_project 2 93645415 93659598 + MGP_C3HHeJ_P0055937 Trp53i11 protein_coding protein_coding MGP_C3HHeJ_T0055938.1 MGP_C3HHeJ_G0025894.1 mouse_genomes_project 2 93645428 93657301 + Trp53i11 protein_coding processed_transcript MGP_C3HHeJ_T0055939.1 MGP_C3HHeJ_G0025894.1 mouse_genomes_project 2 93645428 93658155 + Trp53i11 protein_coding processed_transcript MGP_C3HHeJ_T0055940.1 MGP_C3HHeJ_G0025894.1 mouse_genomes_project 2 93645451 93659588 + MGP_C3HHeJ_P0055940 Trp53i11 protein_coding protein_coding MGP_C3HHeJ_T0055941.1 MGP_C3HHeJ_G0025894.1 mouse_genomes_project 2 93645537 93647430 + Trp53i11 protein_coding processed_transcript MGP_C3HHeJ_T0055942.1 MGP_C3HHeJ_G0025894.1 mouse_genomes_project 2 93647058 93659596 + Trp53i11 protein_coding processed_transcript MGP_C3HHeJ_T0055943.1 MGP_C3HHeJ_G0025894.1 mouse_genomes_project 2 93656770 93658437 + Trp53i11 protein_coding processed_transcript MGP_C3HHeJ_T0010380.1 MGP_C3HHeJ_G0008513.1 mouse_genomes_project 2 150898889 150898968 + Gm27420 miRNA miRNA MGP_C3HHeJ_T0059535.1 MGP_C3HHeJ_G0026741.1 mouse_genomes_project 2 186104783 186106558 + MGP_C3HHeJ_P0059535 Abhd16b protein_coding protein_coding MGP_C3HHeJ_T0057158.1 MGP_C3HHeJ_G0026178.1 mouse_genomes_project 2 129509385 129520281 + MGP_C3HHeJ_P0057158 Gpat2 protein_coding protein_coding MGP_C3HHeJ_T0059485.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185926263 185963714 + MGP_C3HHeJ_P0059485 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0059486.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185926277 185954556 + Rtel1 protein_coding retained_intron MGP_C3HHeJ_T0059487.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185926286 185963676 + Rtel1 protein_coding retained_intron MGP_C3HHeJ_T0059488.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185926286 185963714 + MGP_C3HHeJ_P0059488 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0059489.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185926309 185963714 + MGP_C3HHeJ_P0059489 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0059490.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185926309 185963714 + MGP_C3HHeJ_P0059490 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0059491.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185926309 185963676 + MGP_C3HHeJ_P0059491 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0059492.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185926487 185930219 + MGP_C3HHeJ_P0059492 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0059493.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185935141 185963714 + MGP_C3HHeJ_P0059493 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0059494.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185943451 185954146 + MGP_C3HHeJ_P0059494 Rtel1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059495.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185946638 185954129 + Rtel1 protein_coding retained_intron MGP_C3HHeJ_T0059496.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185956552 185957053 + Rtel1 protein_coding retained_intron MGP_C3HHeJ_T0059497.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185957115 185959161 + Rtel1 protein_coding retained_intron MGP_C3HHeJ_T0059498.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185957225 185958253 + Rtel1 protein_coding retained_intron MGP_C3HHeJ_T0059499.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185959179 185962650 + Rtel1 protein_coding retained_intron MGP_C3HHeJ_T0059500.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185961497 185962911 + Rtel1 protein_coding processed_transcript MGP_C3HHeJ_T0059501.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185962300 185963115 + Rtel1 protein_coding retained_intron MGP_C3HHeJ_T0059502.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185962791 185963713 + Rtel1 protein_coding processed_transcript MGP_C3HHeJ_T0059503.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185962862 185963712 + MGP_C3HHeJ_P0059503 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0059504.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185963067 185963714 + MGP_C3HHeJ_P0059504 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0059505.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185963067 185963714 + MGP_C3HHeJ_P0059505 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0010407.1 MGP_C3HHeJ_G0008540.1 mouse_genomes_project 2 184806608 184806684 + Mir3091 miRNA miRNA MGP_C3HHeJ_T0013378.1 MGP_C3HHeJ_G0011482.1 mouse_genomes_project 2 44358330 44359329 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052935.1 MGP_C3HHeJ_G0025199.1 mouse_genomes_project 2 23371023 23374379 + MGP_C3HHeJ_P0052935 Lcn10 protein_coding protein_coding MGP_C3HHeJ_T0053812.1 MGP_C3HHeJ_G0025340.1 mouse_genomes_project 2 30488954 30499847 + MGP_C3HHeJ_P0053812 Ptges2 protein_coding protein_coding MGP_C3HHeJ_T0053813.1 MGP_C3HHeJ_G0025340.1 mouse_genomes_project 2 30489498 30495090 + MGP_C3HHeJ_P0053813 Ptges2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053814.1 MGP_C3HHeJ_G0025340.1 mouse_genomes_project 2 30491602 30495643 + Ptges2 protein_coding retained_intron MGP_C3HHeJ_T0003827.1 MGP_C3HHeJ_G0003422.1 mouse_genomes_project 2 9608570 9619589 + E030013I19Rik antisense antisense MGP_C3HHeJ_T0003828.1 MGP_C3HHeJ_G0003422.1 mouse_genomes_project 2 9608943 9620604 + E030013I19Rik antisense antisense MGP_C3HHeJ_T0053108.1 MGP_C3HHeJ_G0025232.1 mouse_genomes_project 2 24651179 24656595 - MGP_C3HHeJ_P0053108 Med22 protein_coding protein_coding MGP_C3HHeJ_T0053109.1 MGP_C3HHeJ_G0025232.1 mouse_genomes_project 2 24651505 24656487 - MGP_C3HHeJ_P0053109 Med22 protein_coding protein_coding MGP_C3HHeJ_T0053110.1 MGP_C3HHeJ_G0025232.1 mouse_genomes_project 2 24654026 24656496 - MGP_C3HHeJ_P0053110 Med22 protein_coding protein_coding MGP_C3HHeJ_T0013454.1 MGP_C3HHeJ_G0011558.1 mouse_genomes_project 2 72103422 72104579 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007289.1 MGP_C3HHeJ_G0005970.1 mouse_genomes_project 2 161016264 161018001 - Platr27 lincRNA lincRNA MGP_C3HHeJ_T0013658.1 MGP_C3HHeJ_G0011762.1 mouse_genomes_project 2 150474691 150475021 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010265.1 MGP_C3HHeJ_G0008398.1 mouse_genomes_project 2 7698325 7698452 + Gm22091 miRNA miRNA MGP_C3HHeJ_T0017576.1 MGP_C3HHeJ_G0015200.1 mouse_genomes_project 2 88134760 88137675 - processed_transcript processed_transcript MGP_C3HHeJ_T0013632.1 MGP_C3HHeJ_G0011736.1 mouse_genomes_project 2 142630345 142630783 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010389.1 MGP_C3HHeJ_G0008522.1 mouse_genomes_project 2 162133854 162133912 + Mir3474 miRNA miRNA MGP_C3HHeJ_T0053598.1 MGP_C3HHeJ_G0025312.1 mouse_genomes_project 2 28946810 28952867 + MGP_C3HHeJ_P0053598 Tor1b protein_coding protein_coding MGP_C3HHeJ_T0053599.1 MGP_C3HHeJ_G0025312.1 mouse_genomes_project 2 28946830 28952863 + Tor1b protein_coding retained_intron MGP_C3HHeJ_T0053600.1 MGP_C3HHeJ_G0025312.1 mouse_genomes_project 2 28946842 28950346 + MGP_C3HHeJ_P0053600 Tor1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053601.1 MGP_C3HHeJ_G0025312.1 mouse_genomes_project 2 28947023 28950837 + Tor1b protein_coding retained_intron MGP_C3HHeJ_T0053602.1 MGP_C3HHeJ_G0025312.1 mouse_genomes_project 2 28947038 28952864 + MGP_C3HHeJ_P0053602 Tor1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053603.1 MGP_C3HHeJ_G0025312.1 mouse_genomes_project 2 28947603 28950725 + MGP_C3HHeJ_P0053603 Tor1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053604.1 MGP_C3HHeJ_G0025312.1 mouse_genomes_project 2 28949104 28950964 + Tor1b protein_coding processed_transcript MGP_C3HHeJ_T0099185.1 MGP_C3HHeJ_G0037379.1 mouse_genomes_project 2 30695586 30695691 - Gm23369 snRNA snRNA MGP_C3HHeJ_T0013386.1 MGP_C3HHeJ_G0011490.1 mouse_genomes_project 2 48343488 48343966 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057261.1 MGP_C3HHeJ_G0026207.1 mouse_genomes_project 2 131501933 131508502 - MGP_C3HHeJ_P0057261 Il1b protein_coding protein_coding MGP_C3HHeJ_T0057262.1 MGP_C3HHeJ_G0026207.1 mouse_genomes_project 2 131502485 131504715 - Il1b protein_coding processed_transcript MGP_C3HHeJ_T0057263.1 MGP_C3HHeJ_G0026207.1 mouse_genomes_project 2 131507092 131508502 - Il1b protein_coding retained_intron MGP_C3HHeJ_T0054454.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50893036 51100003 - MGP_C3HHeJ_P0054454 Neb protein_coding protein_coding MGP_C3HHeJ_T0054455.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50893049 51092059 - MGP_C3HHeJ_P0054455 Neb protein_coding unknown_likely_coding MGP_C3HHeJ_T0054456.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50893051 51096339 - MGP_C3HHeJ_P0054456 Neb protein_coding protein_coding MGP_C3HHeJ_T0054457.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50893051 50981398 - MGP_C3HHeJ_P0054457 Neb protein_coding protein_coding MGP_C3HHeJ_T0054458.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50893505 50914313 - Neb protein_coding processed_transcript MGP_C3HHeJ_T0054459.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50893649 50933436 - MGP_C3HHeJ_P0054459 Neb protein_coding protein_coding MGP_C3HHeJ_T0054460.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50912738 50919370 - Neb protein_coding processed_transcript MGP_C3HHeJ_T0054461.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50930598 50933015 - Neb protein_coding processed_transcript MGP_C3HHeJ_T0054462.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50934867 50949162 - MGP_C3HHeJ_P0054462 Neb protein_coding protein_coding MGP_C3HHeJ_T0054463.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50978517 51015536 - MGP_C3HHeJ_P0054463 Neb protein_coding protein_coding MGP_C3HHeJ_T0054464.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 51080863 51096967 - Neb protein_coding processed_transcript MGP_C3HHeJ_T0054465.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 51090042 51100003 - Neb protein_coding processed_transcript MGP_C3HHeJ_T0054265.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37047592 37266756 - MGP_C3HHeJ_P0054265 Nr6a1 protein_coding protein_coding MGP_C3HHeJ_T0054266.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37047596 37264656 - MGP_C3HHeJ_P0054266 Nr6a1 protein_coding protein_coding MGP_C3HHeJ_T0054267.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37047596 37113038 - MGP_C3HHeJ_P0054267 Nr6a1 protein_coding protein_coding MGP_C3HHeJ_T0054268.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37061849 37064717 - Nr6a1 protein_coding processed_transcript MGP_C3HHeJ_T0054269.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37062979 37067210 - Nr6a1 protein_coding processed_transcript MGP_C3HHeJ_T0054270.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37063387 37113043 - MGP_C3HHeJ_P0054270 Nr6a1 protein_coding protein_coding MGP_C3HHeJ_T0054271.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37064676 37113634 - Nr6a1 protein_coding processed_transcript MGP_C3HHeJ_T0054272.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37064795 37264714 - MGP_C3HHeJ_P0054272 Nr6a1 protein_coding protein_coding MGP_C3HHeJ_T0054273.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37066693 37112992 - Nr6a1 protein_coding processed_transcript MGP_C3HHeJ_T0054274.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37067209 37091484 - Nr6a1 protein_coding retained_intron MGP_C3HHeJ_T0054275.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37110455 37112992 - Nr6a1 protein_coding processed_transcript MGP_C3HHeJ_T0013644.1 MGP_C3HHeJ_G0011748.1 mouse_genomes_project 2 146959818 146960126 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056514.1 MGP_C3HHeJ_G0026046.1 mouse_genomes_project 2 120406641 120422666 + MGP_C3HHeJ_P0056514 Bahd1 protein_coding protein_coding MGP_C3HHeJ_T0056515.1 MGP_C3HHeJ_G0026046.1 mouse_genomes_project 2 120407717 120432013 + MGP_C3HHeJ_P0056515 Bahd1 protein_coding protein_coding MGP_C3HHeJ_T0056516.1 MGP_C3HHeJ_G0026046.1 mouse_genomes_project 2 120422088 120432004 + MGP_C3HHeJ_P0056516 Bahd1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0057068.1 MGP_C3HHeJ_G0026159.1 mouse_genomes_project 2 128563209 128599788 + MGP_C3HHeJ_P0057068 Slc27a2 protein_coding protein_coding MGP_C3HHeJ_T0057069.1 MGP_C3HHeJ_G0026159.1 mouse_genomes_project 2 128564392 128575548 + Slc27a2 protein_coding processed_transcript MGP_C3HHeJ_T0057070.1 MGP_C3HHeJ_G0026159.1 mouse_genomes_project 2 128566922 128599482 + MGP_C3HHeJ_P0057070 Slc27a2 protein_coding protein_coding MGP_C3HHeJ_T0057071.1 MGP_C3HHeJ_G0026159.1 mouse_genomes_project 2 128575622 128587048 + Slc27a2 protein_coding processed_transcript MGP_C3HHeJ_T0055433.1 MGP_C3HHeJ_G0025683.1 mouse_genomes_project 2 85986724 85987666 - MGP_C3HHeJ_P0055433 protein_coding protein_coding MGP_C3HHeJ_T0053051.1 MGP_C3HHeJ_G0025223.1 mouse_genomes_project 2 24148573 24185342 - MGP_C3HHeJ_P0053051 Sec16a protein_coding protein_coding MGP_C3HHeJ_T0053052.1 MGP_C3HHeJ_G0025223.1 mouse_genomes_project 2 24148573 24169573 - MGP_C3HHeJ_P0053052 Sec16a protein_coding protein_coding MGP_C3HHeJ_T0053053.1 MGP_C3HHeJ_G0025223.1 mouse_genomes_project 2 24148575 24185344 - MGP_C3HHeJ_P0053053 Sec16a protein_coding protein_coding MGP_C3HHeJ_T0053054.1 MGP_C3HHeJ_G0025223.1 mouse_genomes_project 2 24149431 24152233 - Sec16a protein_coding processed_transcript MGP_C3HHeJ_T0053055.1 MGP_C3HHeJ_G0025223.1 mouse_genomes_project 2 24149861 24155411 - Sec16a protein_coding processed_transcript MGP_C3HHeJ_T0053056.1 MGP_C3HHeJ_G0025223.1 mouse_genomes_project 2 24153559 24158937 - Sec16a protein_coding processed_transcript MGP_C3HHeJ_T0053057.1 MGP_C3HHeJ_G0025223.1 mouse_genomes_project 2 24176041 24179883 - MGP_C3HHeJ_P0053057 Sec16a protein_coding protein_coding MGP_C3HHeJ_T0053058.1 MGP_C3HHeJ_G0025223.1 mouse_genomes_project 2 24182091 24185328 - Sec16a protein_coding processed_transcript MGP_C3HHeJ_T0054731.1 MGP_C3HHeJ_G0025512.1 mouse_genomes_project 2 64791964 64934121 + MGP_C3HHeJ_P0054731 protein_coding protein_coding MGP_C3HHeJ_T0054732.1 MGP_C3HHeJ_G0025512.1 mouse_genomes_project 2 64791964 64864708 + MGP_C3HHeJ_P0054732 protein_coding protein_coding MGP_C3HHeJ_T0054733.1 MGP_C3HHeJ_G0025512.1 mouse_genomes_project 2 64792004 64794435 + protein_coding retained_intron MGP_C3HHeJ_T0054734.1 MGP_C3HHeJ_G0025512.1 mouse_genomes_project 2 64843212 64846314 + protein_coding retained_intron MGP_C3HHeJ_T0054735.1 MGP_C3HHeJ_G0025512.1 mouse_genomes_project 2 64843288 64931761 + MGP_C3HHeJ_P0054735 protein_coding protein_coding MGP_C3HHeJ_T0054736.1 MGP_C3HHeJ_G0025512.1 mouse_genomes_project 2 64844961 64934121 + MGP_C3HHeJ_P0054736 protein_coding protein_coding MGP_C3HHeJ_T0054737.1 MGP_C3HHeJ_G0025512.1 mouse_genomes_project 2 64856802 64858389 + protein_coding retained_intron MGP_C3HHeJ_T0054738.1 MGP_C3HHeJ_G0025512.1 mouse_genomes_project 2 64894457 64905351 + MGP_C3HHeJ_P0054738 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054739.1 MGP_C3HHeJ_G0025512.1 mouse_genomes_project 2 64894480 64905302 + MGP_C3HHeJ_P0054739 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055083.1 MGP_C3HHeJ_G0025582.1 mouse_genomes_project 2 74226970 74229165 + MGP_C3HHeJ_P0055083 Hoxd8 protein_coding protein_coding MGP_C3HHeJ_T0055084.1 MGP_C3HHeJ_G0025582.1 mouse_genomes_project 2 74227260 74230297 + MGP_C3HHeJ_P0055084 Hoxd8 protein_coding protein_coding MGP_C3HHeJ_T0055085.1 MGP_C3HHeJ_G0025582.1 mouse_genomes_project 2 74227507 74229660 + MGP_C3HHeJ_P0055085 Hoxd8 protein_coding protein_coding MGP_C3HHeJ_T0057187.1 MGP_C3HHeJ_G0026185.1 mouse_genomes_project 2 129789274 129815594 - MGP_C3HHeJ_P0057187 Mall protein_coding protein_coding MGP_C3HHeJ_T0057839.1 MGP_C3HHeJ_G0026345.1 mouse_genomes_project 2 153182673 153206366 + MGP_C3HHeJ_P0057839 protein_coding protein_coding MGP_C3HHeJ_T0058830.1 MGP_C3HHeJ_G0026586.1 mouse_genomes_project 2 168465510 168468266 + MGP_C3HHeJ_P0058830 Spint5 protein_coding protein_coding MGP_C3HHeJ_T0058831.1 MGP_C3HHeJ_G0026586.1 mouse_genomes_project 2 168465510 168468266 + MGP_C3HHeJ_P0058831 Spint5 protein_coding protein_coding MGP_C3HHeJ_T0013275.1 MGP_C3HHeJ_G0011379.1 mouse_genomes_project 2 5744265 5744812 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057550.1 MGP_C3HHeJ_G0026269.1 mouse_genomes_project 2 135183796 135229036 - Fermt1 protein_coding retained_intron MGP_C3HHeJ_T0057551.1 MGP_C3HHeJ_G0026269.1 mouse_genomes_project 2 135183796 135229313 - MGP_C3HHeJ_P0057551 Fermt1 protein_coding protein_coding MGP_C3HHeJ_T0057552.1 MGP_C3HHeJ_G0026269.1 mouse_genomes_project 2 135219504 135225498 - Fermt1 protein_coding processed_transcript MGP_C3HHeJ_T0057553.1 MGP_C3HHeJ_G0026269.1 mouse_genomes_project 2 135222487 135225364 - Fermt1 protein_coding processed_transcript MGP_C3HHeJ_T0011425.1 MGP_C3HHeJ_G0009558.1 mouse_genomes_project 2 161976873 161976959 + Gm24379 misc_RNA misc_RNA MGP_C3HHeJ_T0057980.1 MGP_C3HHeJ_G0026392.1 mouse_genomes_project 2 155750885 155790006 + MGP_C3HHeJ_P0057980 H13 protein_coding protein_coding MGP_C3HHeJ_T0057981.1 MGP_C3HHeJ_G0026392.1 mouse_genomes_project 2 155750910 155764771 + H13 protein_coding retained_intron MGP_C3HHeJ_T0057982.1 MGP_C3HHeJ_G0026392.1 mouse_genomes_project 2 155750912 155786404 + MGP_C3HHeJ_P0057982 H13 protein_coding protein_coding MGP_C3HHeJ_T0057983.1 MGP_C3HHeJ_G0026392.1 mouse_genomes_project 2 155750912 155768036 + MGP_C3HHeJ_P0057983 H13 protein_coding protein_coding MGP_C3HHeJ_T0057984.1 MGP_C3HHeJ_G0026392.1 mouse_genomes_project 2 155750958 155785496 + MGP_C3HHeJ_P0057984 H13 protein_coding protein_coding MGP_C3HHeJ_T0057986.1 MGP_C3HHeJ_G0026392.1 mouse_genomes_project 2 155773203 155777635 + H13 protein_coding retained_intron MGP_C3HHeJ_T0055764.1 MGP_C3HHeJ_G0025866.1 mouse_genomes_project 2 91545908 91551333 + MGP_C3HHeJ_P0055764 Acp2 protein_coding protein_coding MGP_C3HHeJ_T0055765.1 MGP_C3HHeJ_G0025866.1 mouse_genomes_project 2 91545932 91557858 + MGP_C3HHeJ_P0055765 Acp2 protein_coding protein_coding MGP_C3HHeJ_T0055766.1 MGP_C3HHeJ_G0025866.1 mouse_genomes_project 2 91545947 91555902 + Acp2 protein_coding retained_intron MGP_C3HHeJ_T0055767.1 MGP_C3HHeJ_G0025866.1 mouse_genomes_project 2 91545947 91549066 + MGP_C3HHeJ_P0055767 Acp2 protein_coding protein_coding MGP_C3HHeJ_T0055768.1 MGP_C3HHeJ_G0025866.1 mouse_genomes_project 2 91545951 91546677 + Acp2 protein_coding processed_transcript MGP_C3HHeJ_T0010261.1 MGP_C3HHeJ_G0008394.1 mouse_genomes_project 2 7694914 7695013 + Mir466f-3 miRNA miRNA MGP_C3HHeJ_T0057410.1 MGP_C3HHeJ_G0026239.1 mouse_genomes_project 2 133278946 133297299 - MGP_C3HHeJ_P0057410 Siglec1 protein_coding protein_coding MGP_C3HHeJ_T0057411.1 MGP_C3HHeJ_G0026239.1 mouse_genomes_project 2 133281780 133297299 - MGP_C3HHeJ_P0057411 Siglec1 protein_coding protein_coding MGP_C3HHeJ_T0057412.1 MGP_C3HHeJ_G0026239.1 mouse_genomes_project 2 133294106 133297299 - MGP_C3HHeJ_P0057412 Siglec1 protein_coding protein_coding MGP_C3HHeJ_T0057969.1 MGP_C3HHeJ_G0026384.1 mouse_genomes_project 2 155612235 155613620 - MGP_C3HHeJ_P0057969 Defb29 protein_coding protein_coding MGP_C3HHeJ_T0007266.1 MGP_C3HHeJ_G0005953.1 mouse_genomes_project 2 150539067 150545742 + A530006G24Rik lincRNA lincRNA MGP_C3HHeJ_T0057617.1 MGP_C3HHeJ_G0026283.1 mouse_genomes_project 2 142008344 142179099 + MGP_C3HHeJ_P0057617 Sptlc3 protein_coding protein_coding MGP_C3HHeJ_T0057618.1 MGP_C3HHeJ_G0026283.1 mouse_genomes_project 2 142008351 142179717 + MGP_C3HHeJ_P0057618 Sptlc3 protein_coding protein_coding MGP_C3HHeJ_T0056517.1 MGP_C3HHeJ_G0026047.1 mouse_genomes_project 2 120433970 120436060 + MGP_C3HHeJ_P0056517 Chst14 protein_coding protein_coding MGP_C3HHeJ_T0056518.1 MGP_C3HHeJ_G0026047.1 mouse_genomes_project 2 120433988 120436054 + MGP_C3HHeJ_P0056518 Chst14 protein_coding protein_coding MGP_C3HHeJ_T0010378.1 MGP_C3HHeJ_G0008511.1 mouse_genomes_project 2 147351473 147351564 - Gm24823 miRNA miRNA MGP_C3HHeJ_T0056663.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121902324 121940506 - MGP_C3HHeJ_P0056663 Vps39 protein_coding protein_coding MGP_C3HHeJ_T0056664.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121902324 121940494 - MGP_C3HHeJ_P0056664 Vps39 protein_coding protein_coding MGP_C3HHeJ_T0056665.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121902690 121940490 - Vps39 protein_coding processed_transcript MGP_C3HHeJ_T0056666.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121903907 121905455 - Vps39 protein_coding retained_intron MGP_C3HHeJ_T0056667.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121905718 121909389 - Vps39 protein_coding retained_intron MGP_C3HHeJ_T0056668.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121907751 121940478 - Vps39 protein_coding retained_intron MGP_C3HHeJ_T0056669.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121911750 121919171 - Vps39 protein_coding retained_intron MGP_C3HHeJ_T0056670.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121925040 121931533 - Vps39 protein_coding processed_transcript MGP_C3HHeJ_T0056671.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121930579 121940490 - Vps39 protein_coding processed_transcript MGP_C3HHeJ_T0056672.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121935783 121940494 - Vps39 protein_coding processed_transcript MGP_C3HHeJ_T0100432.1 MGP_C3HHeJ_G0038626.1 mouse_genomes_project 2 19383025 19383148 - Gm24886 snoRNA snoRNA MGP_C3HHeJ_T0004051.1 MGP_C3HHeJ_G0003581.1 mouse_genomes_project 2 154718196 154725175 - Tmem74bos antisense antisense MGP_C3HHeJ_T0004052.1 MGP_C3HHeJ_G0003581.1 mouse_genomes_project 2 154719749 154724899 - Tmem74bos antisense antisense MGP_C3HHeJ_T0098579.1 MGP_C3HHeJ_G0036775.1 mouse_genomes_project 2 185586397 185589749 + 9230112E08Rik sense_overlapping sense_overlapping MGP_C3HHeJ_T0098580.1 MGP_C3HHeJ_G0036775.1 mouse_genomes_project 2 185586705 185588065 + 9230112E08Rik sense_overlapping sense_overlapping MGP_C3HHeJ_T0017577.1 MGP_C3HHeJ_G0015201.1 mouse_genomes_project 2 88884945 88888463 - Gm13760 processed_transcript processed_transcript MGP_C3HHeJ_T0017578.1 MGP_C3HHeJ_G0015201.1 mouse_genomes_project 2 88885255 88888935 - Gm13760 processed_transcript processed_transcript MGP_C3HHeJ_T0100506.1 MGP_C3HHeJ_G0038700.1 mouse_genomes_project 2 161847230 161847363 + Gm25187 snoRNA snoRNA MGP_C3HHeJ_T0058083.1 MGP_C3HHeJ_G0026415.1 mouse_genomes_project 2 156906073 156942075 + MGP_C3HHeJ_P0058083 Mapre1 protein_coding protein_coding MGP_C3HHeJ_T0058084.1 MGP_C3HHeJ_G0026415.1 mouse_genomes_project 2 156906401 156924593 + Mapre1 protein_coding processed_transcript MGP_C3HHeJ_T0058085.1 MGP_C3HHeJ_G0026415.1 mouse_genomes_project 2 156910192 156922589 + Mapre1 protein_coding processed_transcript MGP_C3HHeJ_T0055344.1 MGP_C3HHeJ_G0025638.1 mouse_genomes_project 2 84480284 84484875 + MGP_C3HHeJ_P0055344 Ypel4 protein_coding protein_coding MGP_C3HHeJ_T0055345.1 MGP_C3HHeJ_G0025638.1 mouse_genomes_project 2 84480324 84484875 + MGP_C3HHeJ_P0055345 Ypel4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055346.1 MGP_C3HHeJ_G0025638.1 mouse_genomes_project 2 84480349 84481845 + Ypel4 protein_coding processed_transcript MGP_C3HHeJ_T0055347.1 MGP_C3HHeJ_G0025638.1 mouse_genomes_project 2 84480453 84484869 + Ypel4 protein_coding retained_intron MGP_C3HHeJ_T0059405.1 MGP_C3HHeJ_G0026720.1 mouse_genomes_project 2 185505210 185521782 - MGP_C3HHeJ_P0059405 Ythdf1 protein_coding protein_coding MGP_C3HHeJ_T0059406.1 MGP_C3HHeJ_G0026720.1 mouse_genomes_project 2 185506203 185521782 - MGP_C3HHeJ_P0059406 Ythdf1 protein_coding protein_coding MGP_C3HHeJ_T0059407.1 MGP_C3HHeJ_G0026720.1 mouse_genomes_project 2 185512602 185521220 - MGP_C3HHeJ_P0059407 Ythdf1 protein_coding protein_coding MGP_C3HHeJ_T0052184.1 MGP_C3HHeJ_G0025069.1 mouse_genomes_project 2 7104212 7244735 - MGP_C3HHeJ_P0052184 Taf3 protein_coding protein_coding MGP_C3HHeJ_T0052185.1 MGP_C3HHeJ_G0025069.1 mouse_genomes_project 2 7104954 7133131 - Taf3 protein_coding processed_transcript MGP_C3HHeJ_T0052186.1 MGP_C3HHeJ_G0025069.1 mouse_genomes_project 2 7105739 7108498 - MGP_C3HHeJ_P0052186 Taf3 protein_coding protein_coding MGP_C3HHeJ_T0052187.1 MGP_C3HHeJ_G0025069.1 mouse_genomes_project 2 7105741 7108072 - MGP_C3HHeJ_P0052187 Taf3 protein_coding protein_coding MGP_C3HHeJ_T0007127.1 MGP_C3HHeJ_G0005839.1 mouse_genomes_project 2 59075442 59076166 + Gm13620 lincRNA lincRNA MGP_C3HHeJ_T0055645.1 MGP_C3HHeJ_G0025852.1 mouse_genomes_project 2 91067618 91105036 + MGP_C3HHeJ_P0055645 Fnbp4 protein_coding protein_coding MGP_C3HHeJ_T0055646.1 MGP_C3HHeJ_G0025852.1 mouse_genomes_project 2 91067852 91099475 + Fnbp4 protein_coding processed_transcript MGP_C3HHeJ_T0055647.1 MGP_C3HHeJ_G0025852.1 mouse_genomes_project 2 91075199 91080453 + Fnbp4 protein_coding processed_transcript MGP_C3HHeJ_T0055648.1 MGP_C3HHeJ_G0025852.1 mouse_genomes_project 2 91080602 91086782 + Fnbp4 protein_coding processed_transcript MGP_C3HHeJ_T0055649.1 MGP_C3HHeJ_G0025852.1 mouse_genomes_project 2 91081405 91090854 + Fnbp4 protein_coding processed_transcript MGP_C3HHeJ_T0055650.1 MGP_C3HHeJ_G0025852.1 mouse_genomes_project 2 91086469 91091075 + Fnbp4 protein_coding processed_transcript MGP_C3HHeJ_T0055651.1 MGP_C3HHeJ_G0025852.1 mouse_genomes_project 2 91091103 91099369 + Fnbp4 protein_coding processed_transcript MGP_C3HHeJ_T0055652.1 MGP_C3HHeJ_G0025852.1 mouse_genomes_project 2 91091660 91099458 + Fnbp4 protein_coding processed_transcript MGP_C3HHeJ_T0055653.1 MGP_C3HHeJ_G0025852.1 mouse_genomes_project 2 91098542 91099366 + Fnbp4 protein_coding processed_transcript MGP_C3HHeJ_T0054858.1 MGP_C3HHeJ_G0025539.1 mouse_genomes_project 2 69217532 69227756 + MGP_C3HHeJ_P0054858 Ssb protein_coding protein_coding MGP_C3HHeJ_T0054859.1 MGP_C3HHeJ_G0025539.1 mouse_genomes_project 2 69217532 69227816 + MGP_C3HHeJ_P0054859 Ssb protein_coding protein_coding MGP_C3HHeJ_T0054860.1 MGP_C3HHeJ_G0025539.1 mouse_genomes_project 2 69217593 69227480 + MGP_C3HHeJ_P0054860 Ssb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054861.1 MGP_C3HHeJ_G0025539.1 mouse_genomes_project 2 69217656 69223519 + MGP_C3HHeJ_P0054861 Ssb protein_coding protein_coding MGP_C3HHeJ_T0054862.1 MGP_C3HHeJ_G0025539.1 mouse_genomes_project 2 69219258 69225117 + Ssb protein_coding processed_transcript MGP_C3HHeJ_T0054863.1 MGP_C3HHeJ_G0025539.1 mouse_genomes_project 2 69224745 69227480 + MGP_C3HHeJ_P0054863 Ssb protein_coding protein_coding MGP_C3HHeJ_T0007307.1 MGP_C3HHeJ_G0005988.1 mouse_genomes_project 2 170126372 170146678 + Gm11468 lincRNA lincRNA MGP_C3HHeJ_T0003882.1 MGP_C3HHeJ_G0003465.1 mouse_genomes_project 2 31589767 31592171 + Gm13536 antisense antisense MGP_C3HHeJ_T0013647.1 MGP_C3HHeJ_G0011751.1 mouse_genomes_project 2 147672025 147672846 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007316.1 MGP_C3HHeJ_G0005994.1 mouse_genomes_project 2 171729200 171734303 + Gm14321 lincRNA lincRNA MGP_C3HHeJ_T0007317.1 MGP_C3HHeJ_G0005994.1 mouse_genomes_project 2 171729269 171733860 + Gm14321 lincRNA lincRNA MGP_C3HHeJ_T0017567.1 MGP_C3HHeJ_G0015191.1 mouse_genomes_project 2 72897300 72930824 + D230022J07Rik processed_transcript processed_transcript MGP_C3HHeJ_T0054835.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69065680 69066926 + Ppig protein_coding processed_transcript MGP_C3HHeJ_T0054836.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69065940 69100581 + MGP_C3HHeJ_P0054836 Ppig protein_coding protein_coding MGP_C3HHeJ_T0054837.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69065989 69079533 + Ppig protein_coding processed_transcript MGP_C3HHeJ_T0054838.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69066038 69078568 + Ppig protein_coding processed_transcript MGP_C3HHeJ_T0054839.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69066228 69100581 + MGP_C3HHeJ_P0054839 Ppig protein_coding protein_coding MGP_C3HHeJ_T0054840.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69066461 69082349 + Ppig protein_coding processed_transcript MGP_C3HHeJ_T0054841.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69072209 69082052 + MGP_C3HHeJ_P0054841 Ppig protein_coding protein_coding MGP_C3HHeJ_T0054842.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69077987 69088311 + Ppig protein_coding processed_transcript MGP_C3HHeJ_T0054843.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69078235 69079286 + Ppig protein_coding processed_transcript MGP_C3HHeJ_T0054844.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69078404 69079303 + Ppig protein_coding processed_transcript MGP_C3HHeJ_T0054845.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69081917 69088397 + Ppig protein_coding processed_transcript MGP_C3HHeJ_T0054846.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69088452 69096126 + Ppig protein_coding processed_transcript MGP_C3HHeJ_T0003908.1 MGP_C3HHeJ_G0003484.1 mouse_genomes_project 2 59524849 59528016 + Gm13583 antisense antisense MGP_C3HHeJ_T0003909.1 MGP_C3HHeJ_G0003484.1 mouse_genomes_project 2 59524851 59524974 + Gm13583 antisense antisense MGP_C3HHeJ_T0003910.1 MGP_C3HHeJ_G0003484.1 mouse_genomes_project 2 59526447 59527367 + Gm13583 antisense antisense MGP_C3HHeJ_T0056452.1 MGP_C3HHeJ_G0026033.1 mouse_genomes_project 2 119756341 119851914 - MGP_C3HHeJ_P0056452 Gpr176 protein_coding protein_coding MGP_C3HHeJ_T0010358.1 MGP_C3HHeJ_G0008491.1 mouse_genomes_project 2 106797496 106797621 + Gm22002 miRNA miRNA MGP_C3HHeJ_T0007055.1 MGP_C3HHeJ_G0005783.1 mouse_genomes_project 2 8264670 8288457 + Gm13264 lincRNA lincRNA MGP_C3HHeJ_T0098283.1 MGP_C3HHeJ_G0036495.1 mouse_genomes_project 2 107679668 107679791 + Gm22813 scaRNA scaRNA MGP_C3HHeJ_T0010322.1 MGP_C3HHeJ_G0008455.1 mouse_genomes_project 2 35986270 35986354 - Mir5128 miRNA miRNA MGP_C3HHeJ_T0007161.1 MGP_C3HHeJ_G0005868.1 mouse_genomes_project 2 75294418 75295000 - Gm13656 lincRNA lincRNA MGP_C3HHeJ_T0001067.1 MGP_C3HHeJ_G0001003.1 mouse_genomes_project 2 151753966 151754331 - TEC TEC MGP_C3HHeJ_T0055686.1 MGP_C3HHeJ_G0025858.1 mouse_genomes_project 2 91272159 91319980 + Celf1 protein_coding processed_transcript MGP_C3HHeJ_T0055687.1 MGP_C3HHeJ_G0025858.1 mouse_genomes_project 2 91272174 91355157 + MGP_C3HHeJ_P0055687 Celf1 protein_coding protein_coding MGP_C3HHeJ_T0055688.1 MGP_C3HHeJ_G0025858.1 mouse_genomes_project 2 91272235 91330841 + Celf1 protein_coding processed_transcript MGP_C3HHeJ_T0055689.1 MGP_C3HHeJ_G0025858.1 mouse_genomes_project 2 91272314 91333747 + Celf1 protein_coding processed_transcript MGP_C3HHeJ_T0055690.1 MGP_C3HHeJ_G0025858.1 mouse_genomes_project 2 91273652 91353240 + MGP_C3HHeJ_P0055690 Celf1 protein_coding protein_coding MGP_C3HHeJ_T0055691.1 MGP_C3HHeJ_G0025858.1 mouse_genomes_project 2 91297618 91320042 + Celf1 protein_coding processed_transcript MGP_C3HHeJ_T0055692.1 MGP_C3HHeJ_G0025858.1 mouse_genomes_project 2 91319971 91355150 + MGP_C3HHeJ_P0055692 Celf1 protein_coding protein_coding MGP_C3HHeJ_T0055693.1 MGP_C3HHeJ_G0025858.1 mouse_genomes_project 2 91330803 91355157 + MGP_C3HHeJ_P0055693 Celf1 protein_coding protein_coding MGP_C3HHeJ_T0055694.1 MGP_C3HHeJ_G0025858.1 mouse_genomes_project 2 91344724 91349032 + Celf1 protein_coding processed_transcript MGP_C3HHeJ_T0057351.1 MGP_C3HHeJ_G0026231.1 mouse_genomes_project 2 132818464 132823702 - MGP_C3HHeJ_P0057351 Lzts3 protein_coding protein_coding MGP_C3HHeJ_T0057352.1 MGP_C3HHeJ_G0026231.1 mouse_genomes_project 2 132818464 132823702 - MGP_C3HHeJ_P0057352 Lzts3 protein_coding protein_coding MGP_C3HHeJ_T0057353.1 MGP_C3HHeJ_G0026231.1 mouse_genomes_project 2 132818468 132829577 - MGP_C3HHeJ_P0057353 Lzts3 protein_coding protein_coding MGP_C3HHeJ_T0053971.1 MGP_C3HHeJ_G0025366.1 mouse_genomes_project 2 31350052 31381703 + MGP_C3HHeJ_P0053971 Angptl2 protein_coding protein_coding MGP_C3HHeJ_T0053972.1 MGP_C3HHeJ_G0025366.1 mouse_genomes_project 2 31350056 31378505 + Angptl2 protein_coding retained_intron MGP_C3HHeJ_T0053973.1 MGP_C3HHeJ_G0025366.1 mouse_genomes_project 2 31350081 31364108 + Angptl2 protein_coding retained_intron MGP_C3HHeJ_T0053974.1 MGP_C3HHeJ_G0025366.1 mouse_genomes_project 2 31350100 31376379 + MGP_C3HHeJ_P0053974 Angptl2 protein_coding protein_coding MGP_C3HHeJ_T0057279.1 MGP_C3HHeJ_G0026210.1 mouse_genomes_project 2 131830958 131844239 - MGP_C3HHeJ_P0057279 protein_coding protein_coding MGP_C3HHeJ_T0057280.1 MGP_C3HHeJ_G0026210.1 mouse_genomes_project 2 131832889 131843064 - MGP_C3HHeJ_P0057280 protein_coding protein_coding MGP_C3HHeJ_T0057281.1 MGP_C3HHeJ_G0026210.1 mouse_genomes_project 2 131842391 131844250 - protein_coding retained_intron MGP_C3HHeJ_T0055439.1 MGP_C3HHeJ_G0025689.1 mouse_genomes_project 2 86073360 86074320 - MGP_C3HHeJ_P0055439 Olfr1047 protein_coding protein_coding MGP_C3HHeJ_T0057819.1 MGP_C3HHeJ_G0026337.1 mouse_genomes_project 2 151692561 151697485 + MGP_C3HHeJ_P0057819 Cst9 protein_coding protein_coding MGP_C3HHeJ_T0058895.1 MGP_C3HHeJ_G0026602.1 mouse_genomes_project 2 168728422 168730781 + MGP_C3HHeJ_P0058895 Slc12a5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058896.1 MGP_C3HHeJ_G0026602.1 mouse_genomes_project 2 168728436 168742517 + Slc12a5 protein_coding processed_transcript MGP_C3HHeJ_T0058897.1 MGP_C3HHeJ_G0026602.1 mouse_genomes_project 2 168728444 168769233 + MGP_C3HHeJ_P0058897 Slc12a5 protein_coding protein_coding MGP_C3HHeJ_T0058898.1 MGP_C3HHeJ_G0026602.1 mouse_genomes_project 2 168728466 168771394 + MGP_C3HHeJ_P0058898 Slc12a5 protein_coding protein_coding MGP_C3HHeJ_T0058899.1 MGP_C3HHeJ_G0026602.1 mouse_genomes_project 2 168736007 168771403 + MGP_C3HHeJ_P0058899 Slc12a5 protein_coding protein_coding MGP_C3HHeJ_T0058900.1 MGP_C3HHeJ_G0026602.1 mouse_genomes_project 2 168736264 168771399 + MGP_C3HHeJ_P0058900 Slc12a5 protein_coding protein_coding MGP_C3HHeJ_T0058901.1 MGP_C3HHeJ_G0026602.1 mouse_genomes_project 2 168736306 168761207 + MGP_C3HHeJ_P0058901 Slc12a5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058902.1 MGP_C3HHeJ_G0026602.1 mouse_genomes_project 2 168753352 168757574 + Slc12a5 protein_coding retained_intron MGP_C3HHeJ_T0058903.1 MGP_C3HHeJ_G0026602.1 mouse_genomes_project 2 168768254 168771394 + Slc12a5 protein_coding retained_intron MGP_C3HHeJ_T0010257.1 MGP_C3HHeJ_G0008390.1 mouse_genomes_project 2 7691610 7691731 + Mir669d miRNA miRNA MGP_C3HHeJ_T0007117.1 MGP_C3HHeJ_G0005831.1 mouse_genomes_project 2 49940073 49995125 + Gm13497 lincRNA lincRNA MGP_C3HHeJ_T0054774.1 MGP_C3HHeJ_G0025521.1 mouse_genomes_project 2 66798591 67057447 + B3galt1 protein_coding processed_transcript MGP_C3HHeJ_T0054775.1 MGP_C3HHeJ_G0025521.1 mouse_genomes_project 2 66994100 67384750 + MGP_C3HHeJ_P0054775 B3galt1 protein_coding protein_coding MGP_C3HHeJ_T0054776.1 MGP_C3HHeJ_G0025521.1 mouse_genomes_project 2 67363110 67387114 + MGP_C3HHeJ_P0054776 B3galt1 protein_coding protein_coding MGP_C3HHeJ_T0054777.1 MGP_C3HHeJ_G0025521.1 mouse_genomes_project 2 67384312 67389289 + MGP_C3HHeJ_P0054777 B3galt1 protein_coding protein_coding MGP_C3HHeJ_T0017561.1 MGP_C3HHeJ_G0015186.1 mouse_genomes_project 2 65598261 65612147 + Gm13630 processed_transcript processed_transcript MGP_C3HHeJ_T0004101.1 MGP_C3HHeJ_G0003621.1 mouse_genomes_project 2 174515722 174517734 + Bcas1os1 antisense antisense MGP_C3HHeJ_T0053128.1 MGP_C3HHeJ_G0025235.1 mouse_genomes_project 2 24663213 24667030 + MGP_C3HHeJ_P0053128 Surf2 protein_coding protein_coding MGP_C3HHeJ_T0053129.1 MGP_C3HHeJ_G0025235.1 mouse_genomes_project 2 24663227 24667019 + Surf2 protein_coding processed_transcript MGP_C3HHeJ_T0053130.1 MGP_C3HHeJ_G0025235.1 mouse_genomes_project 2 24663515 24666668 + Surf2 protein_coding processed_transcript MGP_C3HHeJ_T0053131.1 MGP_C3HHeJ_G0025235.1 mouse_genomes_project 2 24663515 24667013 + Surf2 protein_coding retained_intron MGP_C3HHeJ_T0053132.1 MGP_C3HHeJ_G0025235.1 mouse_genomes_project 2 24663659 24666800 + Surf2 protein_coding processed_transcript MGP_C3HHeJ_T0053133.1 MGP_C3HHeJ_G0025235.1 mouse_genomes_project 2 24664274 24666682 + Surf2 protein_coding processed_transcript MGP_C3HHeJ_T0099206.1 MGP_C3HHeJ_G0037400.1 mouse_genomes_project 2 111173884 111173991 + Gm22997 snRNA snRNA MGP_C3HHeJ_T0099219.1 MGP_C3HHeJ_G0037413.1 mouse_genomes_project 2 135901044 135901151 - Gm25258 snRNA snRNA MGP_C3HHeJ_T0052311.1 MGP_C3HHeJ_G0025085.1 mouse_genomes_project 2 10251077 10319449 + MGP_C3HHeJ_P0052311 Pter protein_coding protein_coding MGP_C3HHeJ_T0052312.1 MGP_C3HHeJ_G0025085.1 mouse_genomes_project 2 10251098 10298150 + Pter protein_coding processed_transcript MGP_C3HHeJ_T0052313.1 MGP_C3HHeJ_G0025085.1 mouse_genomes_project 2 10251105 10319450 + MGP_C3HHeJ_P0052313 Pter protein_coding protein_coding MGP_C3HHeJ_T0052314.1 MGP_C3HHeJ_G0025085.1 mouse_genomes_project 2 10251128 10321924 + MGP_C3HHeJ_P0052314 Pter protein_coding protein_coding MGP_C3HHeJ_T0052315.1 MGP_C3HHeJ_G0025085.1 mouse_genomes_project 2 10251136 10320083 + MGP_C3HHeJ_P0052315 Pter protein_coding protein_coding MGP_C3HHeJ_T0052316.1 MGP_C3HHeJ_G0025085.1 mouse_genomes_project 2 10251137 10299532 + Pter protein_coding processed_transcript MGP_C3HHeJ_T0052317.1 MGP_C3HHeJ_G0025085.1 mouse_genomes_project 2 10295559 10320328 + Pter protein_coding retained_intron MGP_C3HHeJ_T0056083.1 MGP_C3HHeJ_G0025921.1 mouse_genomes_project 2 103743509 103796537 - MGP_C3HHeJ_P0056083 Pdhx protein_coding protein_coding MGP_C3HHeJ_T0056084.1 MGP_C3HHeJ_G0025921.1 mouse_genomes_project 2 103755728 103796359 - MGP_C3HHeJ_P0056084 Pdhx protein_coding protein_coding MGP_C3HHeJ_T0056085.1 MGP_C3HHeJ_G0025921.1 mouse_genomes_project 2 103762649 103796486 - MGP_C3HHeJ_P0056085 Pdhx protein_coding protein_coding MGP_C3HHeJ_T0003971.1 MGP_C3HHeJ_G0003526.1 mouse_genomes_project 2 105004249 105023730 + Gm13883 antisense antisense MGP_C3HHeJ_T0003972.1 MGP_C3HHeJ_G0003526.1 mouse_genomes_project 2 105004249 105008131 + Gm13883 antisense antisense MGP_C3HHeJ_T0059104.1 MGP_C3HHeJ_G0026639.1 mouse_genomes_project 2 172054051 172074839 + MGP_C3HHeJ_P0059104 Pard6b protein_coding protein_coding MGP_C3HHeJ_T0013556.1 MGP_C3HHeJ_G0011660.1 mouse_genomes_project 2 105824059 105824480 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013700.1 MGP_C3HHeJ_G0011804.1 mouse_genomes_project 2 163313856 163314388 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055555.1 MGP_C3HHeJ_G0025791.1 mouse_genomes_project 2 88895784 88898593 - MGP_C3HHeJ_P0055555 protein_coding protein_coding MGP_C3HHeJ_T0052066.1 MGP_C3HHeJ_G0025048.1 mouse_genomes_project 2 1717109 1801288 + MGP_C3HHeJ_P0052066 Bend7 protein_coding protein_coding MGP_C3HHeJ_T0052067.1 MGP_C3HHeJ_G0025048.1 mouse_genomes_project 2 1717112 1789666 + MGP_C3HHeJ_P0052067 Bend7 protein_coding protein_coding MGP_C3HHeJ_T0052068.1 MGP_C3HHeJ_G0025048.1 mouse_genomes_project 2 1717423 1801650 + MGP_C3HHeJ_P0052068 Bend7 protein_coding protein_coding MGP_C3HHeJ_T0052069.1 MGP_C3HHeJ_G0025048.1 mouse_genomes_project 2 1752538 1802867 + Bend7 protein_coding processed_transcript MGP_C3HHeJ_T0013646.1 MGP_C3HHeJ_G0011750.1 mouse_genomes_project 2 147493897 147496151 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055528.1 MGP_C3HHeJ_G0025766.1 mouse_genomes_project 2 88104929 88106972 - MGP_C3HHeJ_P0055528 Olfr1160 protein_coding protein_coding MGP_C3HHeJ_T0007139.1 MGP_C3HHeJ_G0005851.1 mouse_genomes_project 2 71409220 71410536 + Gm13746 lincRNA lincRNA MGP_C3HHeJ_T0059205.1 MGP_C3HHeJ_G0026669.1 mouse_genomes_project 2 177265268 177280892 + MGP_C3HHeJ_P0059205 Rae1 protein_coding protein_coding MGP_C3HHeJ_T0059206.1 MGP_C3HHeJ_G0026669.1 mouse_genomes_project 2 177265275 177274588 + MGP_C3HHeJ_P0059206 Rae1 protein_coding protein_coding MGP_C3HHeJ_T0059207.1 MGP_C3HHeJ_G0026669.1 mouse_genomes_project 2 177271771 177274587 + Rae1 protein_coding retained_intron MGP_C3HHeJ_T0059208.1 MGP_C3HHeJ_G0026669.1 mouse_genomes_project 2 177276803 177277962 + Rae1 protein_coding retained_intron MGP_C3HHeJ_T0059209.1 MGP_C3HHeJ_G0026669.1 mouse_genomes_project 2 177277601 177280580 + Rae1 protein_coding retained_intron MGP_C3HHeJ_T0010348.1 MGP_C3HHeJ_G0008481.1 mouse_genomes_project 2 93024369 93024444 + Mir7222 miRNA miRNA MGP_C3HHeJ_T0013568.1 MGP_C3HHeJ_G0011672.1 mouse_genomes_project 2 111163470 111164455 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056935.1 MGP_C3HHeJ_G0026122.1 mouse_genomes_project 2 123737088 123737848 + Eif3j1 protein_coding processed_transcript MGP_C3HHeJ_T0056936.1 MGP_C3HHeJ_G0026122.1 mouse_genomes_project 2 123737109 123762944 + MGP_C3HHeJ_P0056936 Eif3j1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0010309.1 MGP_C3HHeJ_G0008442.1 mouse_genomes_project 2 28318880 28318976 + miRNA miRNA MGP_C3HHeJ_T0052711.1 MGP_C3HHeJ_G0025157.1 mouse_genomes_project 2 22848297 22860041 - MGP_C3HHeJ_P0052711 Nelfb protein_coding protein_coding MGP_C3HHeJ_T0052712.1 MGP_C3HHeJ_G0025157.1 mouse_genomes_project 2 22848298 22860041 - MGP_C3HHeJ_P0052712 Nelfb protein_coding protein_coding MGP_C3HHeJ_T0052713.1 MGP_C3HHeJ_G0025157.1 mouse_genomes_project 2 22848301 22859933 - Nelfb protein_coding retained_intron MGP_C3HHeJ_T0052714.1 MGP_C3HHeJ_G0025157.1 mouse_genomes_project 2 22848623 22852379 - Nelfb protein_coding retained_intron MGP_C3HHeJ_T0052715.1 MGP_C3HHeJ_G0025157.1 mouse_genomes_project 2 22849270 22852507 - MGP_C3HHeJ_P0052715 Nelfb protein_coding protein_coding MGP_C3HHeJ_T0052716.1 MGP_C3HHeJ_G0025157.1 mouse_genomes_project 2 22849739 22852187 - Nelfb protein_coding retained_intron MGP_C3HHeJ_T0052717.1 MGP_C3HHeJ_G0025157.1 mouse_genomes_project 2 22852476 22859278 - MGP_C3HHeJ_P0052717 Nelfb protein_coding protein_coding MGP_C3HHeJ_T0052718.1 MGP_C3HHeJ_G0025157.1 mouse_genomes_project 2 22852536 22858626 - Nelfb protein_coding processed_transcript MGP_C3HHeJ_T0052719.1 MGP_C3HHeJ_G0025157.1 mouse_genomes_project 2 22853752 22859252 - Nelfb protein_coding retained_intron MGP_C3HHeJ_T0013452.1 MGP_C3HHeJ_G0011556.1 mouse_genomes_project 2 72010106 72010507 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101515.1 MGP_C3HHeJ_G0039498.1 mouse_genomes_project 2 106813681 106857091 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101516.1 MGP_C3HHeJ_G0039498.1 mouse_genomes_project 2 106854715 107234875 + unitary_pseudogene unitary_pseudogene MGP_C3HHeJ_T0101517.1 MGP_C3HHeJ_G0039498.1 mouse_genomes_project 2 107055109 107234875 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101518.1 MGP_C3HHeJ_G0039498.1 mouse_genomes_project 2 107059511 107179000 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101519.1 MGP_C3HHeJ_G0039498.1 mouse_genomes_project 2 107232939 107262517 + unitary_pseudogene retained_intron MGP_C3HHeJ_T0053216.1 MGP_C3HHeJ_G0025252.1 mouse_genomes_project 2 25863074 25871582 - MGP_C3HHeJ_P0053216 Fcnb protein_coding protein_coding MGP_C3HHeJ_T0053217.1 MGP_C3HHeJ_G0025252.1 mouse_genomes_project 2 25864795 25871582 - MGP_C3HHeJ_P0053217 Fcnb protein_coding protein_coding MGP_C3HHeJ_T0053218.1 MGP_C3HHeJ_G0025252.1 mouse_genomes_project 2 25866435 25871582 - MGP_C3HHeJ_P0053218 Fcnb protein_coding protein_coding MGP_C3HHeJ_T0010406.1 MGP_C3HHeJ_G0008539.1 mouse_genomes_project 2 184728226 184728295 - Mir7005 miRNA miRNA MGP_C3HHeJ_T0001052.1 MGP_C3HHeJ_G0000989.1 mouse_genomes_project 2 68270548 68274551 + TEC TEC MGP_C3HHeJ_T0055429.1 MGP_C3HHeJ_G0025679.1 mouse_genomes_project 2 85809573 85810584 + MGP_C3HHeJ_P0055429 Olfr1031 protein_coding protein_coding MGP_C3HHeJ_T0057389.1 MGP_C3HHeJ_G0026237.1 mouse_genomes_project 2 133247899 133251356 - MGP_C3HHeJ_P0057389 Gfra4 protein_coding protein_coding MGP_C3HHeJ_T0057390.1 MGP_C3HHeJ_G0026237.1 mouse_genomes_project 2 133247906 133249725 - Gfra4 protein_coding retained_intron MGP_C3HHeJ_T0057391.1 MGP_C3HHeJ_G0026237.1 mouse_genomes_project 2 133247907 133249779 - Gfra4 protein_coding retained_intron MGP_C3HHeJ_T0057392.1 MGP_C3HHeJ_G0026237.1 mouse_genomes_project 2 133248443 133250950 - MGP_C3HHeJ_P0057392 Gfra4 protein_coding protein_coding MGP_C3HHeJ_T0057393.1 MGP_C3HHeJ_G0026237.1 mouse_genomes_project 2 133248475 133250950 - MGP_C3HHeJ_P0057393 Gfra4 protein_coding protein_coding MGP_C3HHeJ_T0057394.1 MGP_C3HHeJ_G0026237.1 mouse_genomes_project 2 133248475 133251356 - MGP_C3HHeJ_P0057394 Gfra4 protein_coding protein_coding MGP_C3HHeJ_T0057395.1 MGP_C3HHeJ_G0026237.1 mouse_genomes_project 2 133249499 133251356 - MGP_C3HHeJ_P0057395 Gfra4 protein_coding protein_coding MGP_C3HHeJ_T0057396.1 MGP_C3HHeJ_G0026237.1 mouse_genomes_project 2 133249499 133250950 - MGP_C3HHeJ_P0057396 Gfra4 protein_coding protein_coding MGP_C3HHeJ_T0056985.1 MGP_C3HHeJ_G0026139.1 mouse_genomes_project 2 124608619 124664327 + MGP_C3HHeJ_P0056985 Sqrdl protein_coding protein_coding MGP_C3HHeJ_T0056986.1 MGP_C3HHeJ_G0026139.1 mouse_genomes_project 2 124608771 124631979 + MGP_C3HHeJ_P0056986 Sqrdl protein_coding protein_coding MGP_C3HHeJ_T0056987.1 MGP_C3HHeJ_G0026139.1 mouse_genomes_project 2 124608773 124631986 + MGP_C3HHeJ_P0056987 Sqrdl protein_coding protein_coding MGP_C3HHeJ_T0056988.1 MGP_C3HHeJ_G0026139.1 mouse_genomes_project 2 124608791 124611922 + Sqrdl protein_coding processed_transcript MGP_C3HHeJ_T0056989.1 MGP_C3HHeJ_G0026139.1 mouse_genomes_project 2 124617137 124654071 + Sqrdl protein_coding retained_intron MGP_C3HHeJ_T0056990.1 MGP_C3HHeJ_G0026139.1 mouse_genomes_project 2 124628873 124664311 + MGP_C3HHeJ_P0056990 Sqrdl protein_coding protein_coding MGP_C3HHeJ_T0056991.1 MGP_C3HHeJ_G0026139.1 mouse_genomes_project 2 124631834 124634854 + Sqrdl protein_coding processed_transcript MGP_C3HHeJ_T0056992.1 MGP_C3HHeJ_G0026139.1 mouse_genomes_project 2 124631851 124664096 + MGP_C3HHeJ_P0056992 Sqrdl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056993.1 MGP_C3HHeJ_G0026139.1 mouse_genomes_project 2 124651346 124664317 + MGP_C3HHeJ_P0056993 Sqrdl protein_coding protein_coding MGP_C3HHeJ_T0054500.1 MGP_C3HHeJ_G0025474.1 mouse_genomes_project 2 54314532 54486192 + MGP_C3HHeJ_P0054500 Kcnj3 protein_coding protein_coding MGP_C3HHeJ_T0054501.1 MGP_C3HHeJ_G0025474.1 mouse_genomes_project 2 54315718 54483575 + MGP_C3HHeJ_P0054501 Kcnj3 protein_coding protein_coding MGP_C3HHeJ_T0054502.1 MGP_C3HHeJ_G0025474.1 mouse_genomes_project 2 54315727 54486186 + MGP_C3HHeJ_P0054502 Kcnj3 protein_coding protein_coding MGP_C3HHeJ_T0056745.1 MGP_C3HHeJ_G0026093.1 mouse_genomes_project 2 122344009 122359323 - MGP_C3HHeJ_P0056745 Cdan1 protein_coding protein_coding MGP_C3HHeJ_T0056746.1 MGP_C3HHeJ_G0026093.1 mouse_genomes_project 2 122344365 122359324 - MGP_C3HHeJ_P0056746 Cdan1 protein_coding protein_coding MGP_C3HHeJ_T0056747.1 MGP_C3HHeJ_G0026093.1 mouse_genomes_project 2 122346029 122468343 - Cdan1 protein_coding processed_transcript MGP_C3HHeJ_T0056748.1 MGP_C3HHeJ_G0026093.1 mouse_genomes_project 2 122346464 122348356 - Cdan1 protein_coding processed_transcript MGP_C3HHeJ_T0056749.1 MGP_C3HHeJ_G0026093.1 mouse_genomes_project 2 122350201 122352261 - Cdan1 protein_coding retained_intron MGP_C3HHeJ_T0056750.1 MGP_C3HHeJ_G0026093.1 mouse_genomes_project 2 122353416 122355783 - Cdan1 protein_coding retained_intron MGP_C3HHeJ_T0056751.1 MGP_C3HHeJ_G0026093.1 mouse_genomes_project 2 122355723 122356444 - Cdan1 protein_coding retained_intron MGP_C3HHeJ_T0056752.1 MGP_C3HHeJ_G0026093.1 mouse_genomes_project 2 122356433 122359312 - Cdan1 protein_coding processed_transcript MGP_C3HHeJ_T0056753.1 MGP_C3HHeJ_G0026093.1 mouse_genomes_project 2 122357747 122359296 - Cdan1 protein_coding processed_transcript MGP_C3HHeJ_T0054189.1 MGP_C3HHeJ_G0025417.1 mouse_genomes_project 2 35283007 35283934 + MGP_C3HHeJ_P0054189 Olfr357 protein_coding protein_coding MGP_C3HHeJ_T0053714.1 MGP_C3HHeJ_G0025330.1 mouse_genomes_project 2 30108665 30146130 - MGP_C3HHeJ_P0053714 Fam78a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053717.1 MGP_C3HHeJ_G0025330.1 mouse_genomes_project 2 30126393 30145244 - MGP_C3HHeJ_P0053717 Fam78a protein_coding protein_coding MGP_C3HHeJ_T0053718.1 MGP_C3HHeJ_G0025330.1 mouse_genomes_project 2 30128946 30140813 - Fam78a protein_coding processed_transcript MGP_C3HHeJ_T0053719.1 MGP_C3HHeJ_G0025330.1 mouse_genomes_project 2 30144732 30146345 - Fam78a protein_coding processed_transcript MGP_C3HHeJ_T0056324.1 MGP_C3HHeJ_G0025984.1 mouse_genomes_project 2 112681639 112682578 - MGP_C3HHeJ_P0056324 protein_coding protein_coding MGP_C3HHeJ_T0053299.1 MGP_C3HHeJ_G0025270.1 mouse_genomes_project 2 26909091 26940644 + MGP_C3HHeJ_P0053299 Ttf1 protein_coding protein_coding MGP_C3HHeJ_T0053300.1 MGP_C3HHeJ_G0025270.1 mouse_genomes_project 2 26909095 26940604 + Ttf1 protein_coding retained_intron MGP_C3HHeJ_T0053301.1 MGP_C3HHeJ_G0025270.1 mouse_genomes_project 2 26927777 26934560 + Ttf1 protein_coding retained_intron MGP_C3HHeJ_T0053302.1 MGP_C3HHeJ_G0025270.1 mouse_genomes_project 2 26936372 26937656 + Ttf1 protein_coding retained_intron MGP_C3HHeJ_T0055530.1 MGP_C3HHeJ_G0025768.1 mouse_genomes_project 2 88125133 88126099 + MGP_C3HHeJ_P0055530 Olfr1161 protein_coding protein_coding MGP_C3HHeJ_T0052528.1 MGP_C3HHeJ_G0025124.1 mouse_genomes_project 2 20078680 20080477 - MGP_C3HHeJ_P0052528 protein_coding protein_coding MGP_C3HHeJ_T0100447.1 MGP_C3HHeJ_G0038641.1 mouse_genomes_project 2 35689119 35689230 - Snord90 snoRNA snoRNA MGP_C3HHeJ_T0003841.1 MGP_C3HHeJ_G0003434.1 mouse_genomes_project 2 18525868 18526812 + Gm13375 antisense antisense MGP_C3HHeJ_T0003833.1 MGP_C3HHeJ_G0003426.1 mouse_genomes_project 2 14979817 14980756 + Gm13324 antisense antisense MGP_C3HHeJ_T0057797.1 MGP_C3HHeJ_G0026325.1 mouse_genomes_project 2 151258510 151259934 + MGP_C3HHeJ_P0057797 Sstr4 protein_coding protein_coding MGP_C3HHeJ_T0058769.1 MGP_C3HHeJ_G0026559.1 mouse_genomes_project 2 167935104 167937642 - MGP_C3HHeJ_P0058769 Svs2 protein_coding protein_coding MGP_C3HHeJ_T0058770.1 MGP_C3HHeJ_G0026559.1 mouse_genomes_project 2 167935703 167937440 - MGP_C3HHeJ_P0058770 Svs2 protein_coding protein_coding MGP_C3HHeJ_T0054544.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58068314 58267498 + MGP_C3HHeJ_P0054544 Pkp4 protein_coding protein_coding MGP_C3HHeJ_T0054545.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58068314 58267499 + MGP_C3HHeJ_P0054545 Pkp4 protein_coding protein_coding MGP_C3HHeJ_T0054546.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58069152 58250151 + MGP_C3HHeJ_P0054546 Pkp4 protein_coding protein_coding MGP_C3HHeJ_T0054547.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58069152 58267118 + MGP_C3HHeJ_P0054547 Pkp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054548.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58069180 58267502 + MGP_C3HHeJ_P0054548 Pkp4 protein_coding protein_coding MGP_C3HHeJ_T0054549.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58069192 58216634 + Pkp4 protein_coding processed_transcript MGP_C3HHeJ_T0054550.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58069215 58250154 + MGP_C3HHeJ_P0054550 Pkp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054551.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58070099 58124105 + Pkp4 protein_coding processed_transcript MGP_C3HHeJ_T0054552.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58070099 58216866 + MGP_C3HHeJ_P0054552 Pkp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054553.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58109900 58124120 + Pkp4 protein_coding processed_transcript MGP_C3HHeJ_T0054554.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58123756 58267501 + MGP_C3HHeJ_P0054554 Pkp4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0054555.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58138822 58267499 + MGP_C3HHeJ_P0054555 Pkp4 protein_coding protein_coding MGP_C3HHeJ_T0054556.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58176620 58219737 + Pkp4 protein_coding processed_transcript MGP_C3HHeJ_T0054557.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58234102 58267499 + Pkp4 protein_coding processed_transcript MGP_C3HHeJ_T0054558.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58253474 58259534 + Pkp4 protein_coding processed_transcript MGP_C3HHeJ_T0003878.1 MGP_C3HHeJ_G0003461.1 mouse_genomes_project 2 30311713 30315314 - Gm13610 antisense antisense MGP_C3HHeJ_T0100498.1 MGP_C3HHeJ_G0038692.1 mouse_genomes_project 2 154165770 154165906 + Gm23261 snoRNA snoRNA MGP_C3HHeJ_T0013364.1 MGP_C3HHeJ_G0011468.1 mouse_genomes_project 2 37630575 37631340 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054647.1 MGP_C3HHeJ_G0025498.1 mouse_genomes_project 2 60720448 60812427 + MGP_C3HHeJ_P0054647 Psmd14 protein_coding protein_coding MGP_C3HHeJ_T0054648.1 MGP_C3HHeJ_G0025498.1 mouse_genomes_project 2 60720496 60732997 + Psmd14 protein_coding processed_transcript MGP_C3HHeJ_T0054649.1 MGP_C3HHeJ_G0025498.1 mouse_genomes_project 2 60720514 60777023 + Psmd14 protein_coding processed_transcript MGP_C3HHeJ_T0054650.1 MGP_C3HHeJ_G0025498.1 mouse_genomes_project 2 60720534 60737835 + Psmd14 protein_coding processed_transcript MGP_C3HHeJ_T0054651.1 MGP_C3HHeJ_G0025498.1 mouse_genomes_project 2 60720545 60773495 + Psmd14 protein_coding processed_transcript MGP_C3HHeJ_T0054652.1 MGP_C3HHeJ_G0025498.1 mouse_genomes_project 2 60724577 60763180 + Psmd14 protein_coding processed_transcript MGP_C3HHeJ_T0054653.1 MGP_C3HHeJ_G0025498.1 mouse_genomes_project 2 60777500 60812104 + Psmd14 protein_coding processed_transcript MGP_C3HHeJ_T0054654.1 MGP_C3HHeJ_G0025498.1 mouse_genomes_project 2 60788644 60812125 + Psmd14 protein_coding processed_transcript MGP_C3HHeJ_T0004039.1 MGP_C3HHeJ_G0003571.1 mouse_genomes_project 2 146430506 146466378 - Pcsk2os2 antisense antisense MGP_C3HHeJ_T0004040.1 MGP_C3HHeJ_G0003571.1 mouse_genomes_project 2 146432087 146473153 - Pcsk2os2 antisense antisense MGP_C3HHeJ_T0055421.1 MGP_C3HHeJ_G0025672.1 mouse_genomes_project 2 85636546 85644068 + MGP_C3HHeJ_P0055421 Olfr1020 protein_coding protein_coding MGP_C3HHeJ_T0100488.1 MGP_C3HHeJ_G0038682.1 mouse_genomes_project 2 132451798 132451870 + Snord57 snoRNA snoRNA MGP_C3HHeJ_T0051993.1 MGP_C3HHeJ_G0025035.1 mouse_genomes_project 2 250053 298115 + MGP_C3HHeJ_P0051993 Nmt2 protein_coding protein_coding MGP_C3HHeJ_T0051994.1 MGP_C3HHeJ_G0025035.1 mouse_genomes_project 2 250098 295959 + MGP_C3HHeJ_P0051994 Nmt2 protein_coding protein_coding MGP_C3HHeJ_T0051995.1 MGP_C3HHeJ_G0025035.1 mouse_genomes_project 2 250109 295441 + MGP_C3HHeJ_P0051995 Nmt2 protein_coding protein_coding MGP_C3HHeJ_T0051996.1 MGP_C3HHeJ_G0025035.1 mouse_genomes_project 2 250122 275182 + Nmt2 protein_coding processed_transcript MGP_C3HHeJ_T0059107.1 MGP_C3HHeJ_G0026641.1 mouse_genomes_project 2 172162431 172212678 - MGP_C3HHeJ_P0059107 Gm20716 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013421.1 MGP_C3HHeJ_G0011525.1 mouse_genomes_project 2 58932990 58933384 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100431.1 MGP_C3HHeJ_G0038625.1 mouse_genomes_project 2 17466433 17466524 + Gm25859 snoRNA snoRNA MGP_C3HHeJ_T0007192.1 MGP_C3HHeJ_G0005893.1 mouse_genomes_project 2 102557723 102568876 + Gm13905 lincRNA lincRNA MGP_C3HHeJ_T0101907.1 MGP_C3HHeJ_G0039872.1 mouse_genomes_project 2 87917687 87918609 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0059185.1 MGP_C3HHeJ_G0026661.1 mouse_genomes_project 2 176581187 176586577 + MGP_C3HHeJ_P0059185 Cstf1 protein_coding protein_coding MGP_C3HHeJ_T0059186.1 MGP_C3HHeJ_G0026661.1 mouse_genomes_project 2 176581240 176592962 + MGP_C3HHeJ_P0059186 Cstf1 protein_coding protein_coding MGP_C3HHeJ_T0057958.1 MGP_C3HHeJ_G0026376.1 mouse_genomes_project 2 155461807 155466260 - MGP_C3HHeJ_P0057958 Sox12 protein_coding protein_coding MGP_C3HHeJ_T0057959.1 MGP_C3HHeJ_G0026376.1 mouse_genomes_project 2 155461810 155466243 - MGP_C3HHeJ_P0057959 Sox12 protein_coding protein_coding MGP_C3HHeJ_T0057027.1 MGP_C3HHeJ_G0026147.1 mouse_genomes_project 2 127256838 127472191 - MGP_C3HHeJ_P0057027 Fbn1 protein_coding protein_coding MGP_C3HHeJ_T0057028.1 MGP_C3HHeJ_G0026147.1 mouse_genomes_project 2 127256871 127473801 - MGP_C3HHeJ_P0057028 Fbn1 protein_coding protein_coding MGP_C3HHeJ_T0057029.1 MGP_C3HHeJ_G0026147.1 mouse_genomes_project 2 127348177 127471878 - Fbn1 protein_coding retained_intron MGP_C3HHeJ_T0099229.1 MGP_C3HHeJ_G0037423.1 mouse_genomes_project 2 168340550 168340657 + Gm25512 snRNA snRNA MGP_C3HHeJ_T0058716.1 MGP_C3HHeJ_G0026542.1 mouse_genomes_project 2 167197075 167238114 + MGP_C3HHeJ_P0058716 Hnf4a protein_coding protein_coding MGP_C3HHeJ_T0058717.1 MGP_C3HHeJ_G0026542.1 mouse_genomes_project 2 167231444 167245671 + Hnf4a protein_coding processed_transcript MGP_C3HHeJ_T0058718.1 MGP_C3HHeJ_G0026542.1 mouse_genomes_project 2 167231814 167259463 + MGP_C3HHeJ_P0058718 Hnf4a protein_coding protein_coding MGP_C3HHeJ_T0058719.1 MGP_C3HHeJ_G0026542.1 mouse_genomes_project 2 167231815 167259458 + MGP_C3HHeJ_P0058719 Hnf4a protein_coding protein_coding MGP_C3HHeJ_T0058720.1 MGP_C3HHeJ_G0026542.1 mouse_genomes_project 2 167235569 167245670 + MGP_C3HHeJ_P0058720 Hnf4a protein_coding protein_coding MGP_C3HHeJ_T0003967.1 MGP_C3HHeJ_G0003524.1 mouse_genomes_project 2 102747051 102750845 + Gm13920 antisense antisense MGP_C3HHeJ_T0052792.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23014894 23018964 - Dpp7 protein_coding processed_transcript MGP_C3HHeJ_T0052793.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23014905 23018950 - Dpp7 protein_coding processed_transcript MGP_C3HHeJ_T0052794.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23014908 23015493 - Dpp7 protein_coding processed_transcript MGP_C3HHeJ_T0052795.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23014908 23018978 - MGP_C3HHeJ_P0052795 Dpp7 protein_coding protein_coding MGP_C3HHeJ_T0052796.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23015772 23018677 - Dpp7 protein_coding processed_transcript MGP_C3HHeJ_T0052797.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23015978 23018916 - Dpp7 protein_coding processed_transcript MGP_C3HHeJ_T0052798.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23017086 23018916 - Dpp7 protein_coding processed_transcript MGP_C3HHeJ_T0052799.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23017615 23018972 - Dpp7 protein_coding processed_transcript MGP_C3HHeJ_T0052800.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23018060 23018965 - Dpp7 protein_coding processed_transcript MGP_C3HHeJ_T0052801.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23018321 23018951 - Dpp7 protein_coding processed_transcript MGP_C3HHeJ_T0059589.1 MGP_C3HHeJ_G0026749.1 mouse_genomes_project 2 186296693 186303724 + Tcea2 protein_coding retained_intron MGP_C3HHeJ_T0059590.1 MGP_C3HHeJ_G0026749.1 mouse_genomes_project 2 186296693 186304453 + MGP_C3HHeJ_P0059590 Tcea2 protein_coding protein_coding MGP_C3HHeJ_T0059591.1 MGP_C3HHeJ_G0026749.1 mouse_genomes_project 2 186297573 186304433 + MGP_C3HHeJ_P0059591 Tcea2 protein_coding protein_coding MGP_C3HHeJ_T0059592.1 MGP_C3HHeJ_G0026749.1 mouse_genomes_project 2 186299268 186304427 + MGP_C3HHeJ_P0059592 Tcea2 protein_coding protein_coding MGP_C3HHeJ_T0059593.1 MGP_C3HHeJ_G0026749.1 mouse_genomes_project 2 186299549 186302670 + Tcea2 protein_coding processed_transcript MGP_C3HHeJ_T0059594.1 MGP_C3HHeJ_G0026749.1 mouse_genomes_project 2 186299958 186304293 + Tcea2 protein_coding retained_intron MGP_C3HHeJ_T0059595.1 MGP_C3HHeJ_G0026749.1 mouse_genomes_project 2 186299984 186303311 + Tcea2 protein_coding retained_intron MGP_C3HHeJ_T0059596.1 MGP_C3HHeJ_G0026749.1 mouse_genomes_project 2 186303889 186304444 + Tcea2 protein_coding processed_transcript MGP_C3HHeJ_T0055432.1 MGP_C3HHeJ_G0025682.1 mouse_genomes_project 2 85986706 85987666 - MGP_C3HHeJ_P0055432 protein_coding protein_coding MGP_C3HHeJ_T0058773.1 MGP_C3HHeJ_G0026562.1 mouse_genomes_project 2 167980919 167983426 - MGP_C3HHeJ_P0058773 Svs4 protein_coding protein_coding MGP_C3HHeJ_T0007130.1 MGP_C3HHeJ_G0005842.1 mouse_genomes_project 2 61467804 61471517 - Gm13564 lincRNA lincRNA MGP_C3HHeJ_T0098397.1 MGP_C3HHeJ_G0036603.1 mouse_genomes_project 2 57661554 57689371 + Gm13558 sense_intronic sense_intronic MGP_C3HHeJ_T0058369.1 MGP_C3HHeJ_G0026475.1 mouse_genomes_project 2 159411158 159434180 - MGP_C3HHeJ_P0058369 Rbm12 protein_coding protein_coding MGP_C3HHeJ_T0058370.1 MGP_C3HHeJ_G0026475.1 mouse_genomes_project 2 159411158 159434180 - MGP_C3HHeJ_P0058370 Rbm12 protein_coding protein_coding MGP_C3HHeJ_T0058371.1 MGP_C3HHeJ_G0026475.1 mouse_genomes_project 2 159416715 159434140 - MGP_C3HHeJ_P0058371 Rbm12 protein_coding protein_coding MGP_C3HHeJ_T0058372.1 MGP_C3HHeJ_G0026475.1 mouse_genomes_project 2 159417151 159434202 - MGP_C3HHeJ_P0058372 Rbm12 protein_coding protein_coding MGP_C3HHeJ_T0058373.1 MGP_C3HHeJ_G0026475.1 mouse_genomes_project 2 159417180 159434185 - MGP_C3HHeJ_P0058373 Rbm12 protein_coding protein_coding MGP_C3HHeJ_T0053674.1 MGP_C3HHeJ_G0025322.1 mouse_genomes_project 2 29664439 29680178 + MGP_C3HHeJ_P0053674 Prdm12 protein_coding protein_coding MGP_C3HHeJ_T0011405.1 MGP_C3HHeJ_G0009538.1 mouse_genomes_project 2 65793127 65793411 + Gm23046 misc_RNA misc_RNA MGP_C3HHeJ_T0099207.1 MGP_C3HHeJ_G0037401.1 mouse_genomes_project 2 114545064 114545226 + Gm26505 snRNA snRNA MGP_C3HHeJ_T0056260.1 MGP_C3HHeJ_G0025958.1 mouse_genomes_project 2 110039301 110227062 - MGP_C3HHeJ_P0056260 Mettl15 protein_coding protein_coding MGP_C3HHeJ_T0056261.1 MGP_C3HHeJ_G0025958.1 mouse_genomes_project 2 110039304 110227052 - Mettl15 protein_coding processed_transcript MGP_C3HHeJ_T0056262.1 MGP_C3HHeJ_G0025958.1 mouse_genomes_project 2 110073272 110229521 - MGP_C3HHeJ_P0056262 Mettl15 protein_coding protein_coding MGP_C3HHeJ_T0056263.1 MGP_C3HHeJ_G0025958.1 mouse_genomes_project 2 110184974 110229499 - Mettl15 protein_coding retained_intron MGP_C3HHeJ_T0056264.1 MGP_C3HHeJ_G0025958.1 mouse_genomes_project 2 110185039 110229475 - Mettl15 protein_coding processed_transcript MGP_C3HHeJ_T0010313.1 MGP_C3HHeJ_G0008446.1 mouse_genomes_project 2 30249664 30249743 + Gm27805 miRNA miRNA MGP_C3HHeJ_T0059235.1 MGP_C3HHeJ_G0026679.1 mouse_genomes_project 2 178047324 178094733 + MGP_C3HHeJ_P0059235 Vapb protein_coding protein_coding MGP_C3HHeJ_T0059236.1 MGP_C3HHeJ_G0026679.1 mouse_genomes_project 2 178077348 178087644 + Vapb protein_coding processed_transcript MGP_C3HHeJ_T0055404.1 MGP_C3HHeJ_G0025655.1 mouse_genomes_project 2 85124480 85125556 - MGP_C3HHeJ_P0055404 protein_coding protein_coding MGP_C3HHeJ_T0057503.1 MGP_C3HHeJ_G0026259.1 mouse_genomes_project 2 134499767 134503883 - MGP_C3HHeJ_P0057503 protein_coding protein_coding MGP_C3HHeJ_T0057504.1 MGP_C3HHeJ_G0026259.1 mouse_genomes_project 2 134500479 134503165 - protein_coding processed_transcript MGP_C3HHeJ_T0057505.1 MGP_C3HHeJ_G0026259.1 mouse_genomes_project 2 134501899 134503536 - protein_coding retained_intron MGP_C3HHeJ_T0057506.1 MGP_C3HHeJ_G0026259.1 mouse_genomes_project 2 134501999 134503171 - protein_coding retained_intron MGP_C3HHeJ_T0099192.1 MGP_C3HHeJ_G0037386.1 mouse_genomes_project 2 52097634 52097740 - Gm25898 snRNA snRNA MGP_C3HHeJ_T0055579.1 MGP_C3HHeJ_G0025812.1 mouse_genomes_project 2 89344008 89344944 - MGP_C3HHeJ_P0055579 Olfr1225 protein_coding protein_coding MGP_C3HHeJ_T0052195.1 MGP_C3HHeJ_G0025071.1 mouse_genomes_project 2 7278907 7290134 + Kin protein_coding processed_transcript MGP_C3HHeJ_T0052196.1 MGP_C3HHeJ_G0025071.1 mouse_genomes_project 2 7278938 7291121 + MGP_C3HHeJ_P0052196 Kin protein_coding protein_coding MGP_C3HHeJ_T0052197.1 MGP_C3HHeJ_G0025071.1 mouse_genomes_project 2 7288611 7290494 + Kin protein_coding processed_transcript MGP_C3HHeJ_T0017518.1 MGP_C3HHeJ_G0015161.1 mouse_genomes_project 2 16964249 16965573 + 1810010K12Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017519.1 MGP_C3HHeJ_G0015161.1 mouse_genomes_project 2 16964891 16967417 + 1810010K12Rik processed_transcript processed_transcript MGP_C3HHeJ_T0013586.1 MGP_C3HHeJ_G0011690.1 mouse_genomes_project 2 120087296 120087781 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007205.1 MGP_C3HHeJ_G0005903.1 mouse_genomes_project 2 107436675 107442725 - Gm14014 lincRNA lincRNA MGP_C3HHeJ_T0013621.1 MGP_C3HHeJ_G0011725.1 mouse_genomes_project 2 134951055 134952026 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055510.1 MGP_C3HHeJ_G0025749.1 mouse_genomes_project 2 87781253 87782186 - MGP_C3HHeJ_P0055510 Olfr1136 protein_coding protein_coding MGP_C3HHeJ_T0055036.1 MGP_C3HHeJ_G0025571.1 mouse_genomes_project 2 73078153 73098205 - MGP_C3HHeJ_P0055036 Chrna1 protein_coding protein_coding MGP_C3HHeJ_T0054868.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69252951 69384147 + MGP_C3HHeJ_P0054868 Ubr3 protein_coding protein_coding MGP_C3HHeJ_T0054869.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69252951 69384147 + MGP_C3HHeJ_P0054869 Ubr3 protein_coding protein_coding MGP_C3HHeJ_T0054870.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69253008 69296237 + MGP_C3HHeJ_P0054870 Ubr3 protein_coding protein_coding MGP_C3HHeJ_T0054871.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69293520 69302878 + Ubr3 protein_coding processed_transcript MGP_C3HHeJ_T0054872.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69348761 69369294 + MGP_C3HHeJ_P0054872 Ubr3 protein_coding protein_coding MGP_C3HHeJ_T0054873.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69353713 69382679 + Ubr3 protein_coding processed_transcript MGP_C3HHeJ_T0054874.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69360474 69369432 + Ubr3 protein_coding processed_transcript MGP_C3HHeJ_T0054875.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69369112 69376599 + Ubr3 protein_coding processed_transcript MGP_C3HHeJ_T0054876.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69380261 69381320 + Ubr3 protein_coding processed_transcript MGP_C3HHeJ_T0054877.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69380645 69382354 + Ubr3 protein_coding processed_transcript MGP_C3HHeJ_T0055457.1 MGP_C3HHeJ_G0025706.1 mouse_genomes_project 2 86638629 86639571 - MGP_C3HHeJ_P0055457 Olfr1087 protein_coding protein_coding MGP_C3HHeJ_T0059386.1 MGP_C3HHeJ_G0026715.1 mouse_genomes_project 2 185196644 185218205 - MGP_C3HHeJ_P0059386 Tcfl5 protein_coding protein_coding MGP_C3HHeJ_T0059387.1 MGP_C3HHeJ_G0026715.1 mouse_genomes_project 2 185210900 185218205 - MGP_C3HHeJ_P0059387 Tcfl5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059388.1 MGP_C3HHeJ_G0026715.1 mouse_genomes_project 2 185213112 185217993 - Tcfl5 protein_coding retained_intron MGP_C3HHeJ_T0003831.1 MGP_C3HHeJ_G0003425.1 mouse_genomes_project 2 12119266 12143541 - Gm13269 antisense antisense MGP_C3HHeJ_T0003832.1 MGP_C3HHeJ_G0003425.1 mouse_genomes_project 2 12119266 12147086 - Gm13269 antisense antisense MGP_C3HHeJ_T0013651.1 MGP_C3HHeJ_G0011755.1 mouse_genomes_project 2 149680798 149681635 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099204.1 MGP_C3HHeJ_G0037398.1 mouse_genomes_project 2 91543185 91543291 + Gm23390 snRNA snRNA MGP_C3HHeJ_T0010344.1 MGP_C3HHeJ_G0008477.1 mouse_genomes_project 2 92343754 92343815 - Mir6999 miRNA miRNA MGP_C3HHeJ_T0003876.1 MGP_C3HHeJ_G0003459.1 mouse_genomes_project 2 30016582 30017436 - Gm13442 antisense antisense MGP_C3HHeJ_T0058706.1 MGP_C3HHeJ_G0026537.1 mouse_genomes_project 2 167006218 167075410 - MGP_C3HHeJ_P0058706 Jph2 protein_coding protein_coding MGP_C3HHeJ_T0058707.1 MGP_C3HHeJ_G0026537.1 mouse_genomes_project 2 167006218 167075454 - MGP_C3HHeJ_P0058707 Jph2 protein_coding protein_coding MGP_C3HHeJ_T0056660.1 MGP_C3HHeJ_G0026082.1 mouse_genomes_project 2 121846578 121869844 - MGP_C3HHeJ_P0056660 Pla2g4d protein_coding protein_coding MGP_C3HHeJ_T0057634.1 MGP_C3HHeJ_G0026289.1 mouse_genomes_project 2 142814550 142972904 - MGP_C3HHeJ_P0057634 Sel1l2 protein_coding protein_coding MGP_C3HHeJ_T0057635.1 MGP_C3HHeJ_G0026289.1 mouse_genomes_project 2 142880520 142884155 - Sel1l2 protein_coding processed_transcript MGP_C3HHeJ_T0057636.1 MGP_C3HHeJ_G0026289.1 mouse_genomes_project 2 142880525 142972906 - MGP_C3HHeJ_P0057636 Sel1l2 protein_coding protein_coding MGP_C3HHeJ_T0053815.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30511028 30527661 - MGP_C3HHeJ_P0053815 Slc25a25 protein_coding protein_coding MGP_C3HHeJ_T0053816.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30511028 30548359 - MGP_C3HHeJ_P0053816 Slc25a25 protein_coding protein_coding MGP_C3HHeJ_T0053817.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30511031 30548382 - MGP_C3HHeJ_P0053817 Slc25a25 protein_coding protein_coding MGP_C3HHeJ_T0053818.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30511511 30527294 - MGP_C3HHeJ_P0053818 Slc25a25 protein_coding protein_coding MGP_C3HHeJ_T0053819.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30511601 30520547 - MGP_C3HHeJ_P0053819 Slc25a25 protein_coding protein_coding MGP_C3HHeJ_T0053820.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30512750 30513113 - Slc25a25 protein_coding retained_intron MGP_C3HHeJ_T0053821.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30513633 30516992 - Slc25a25 protein_coding retained_intron MGP_C3HHeJ_T0053822.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30513713 30514372 - Slc25a25 protein_coding retained_intron MGP_C3HHeJ_T0053823.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30513959 30527647 - MGP_C3HHeJ_P0053823 Slc25a25 protein_coding protein_coding MGP_C3HHeJ_T0053824.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30515589 30518522 - MGP_C3HHeJ_P0053824 Slc25a25 protein_coding protein_coding MGP_C3HHeJ_T0053825.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30515671 30527646 - MGP_C3HHeJ_P0053825 Slc25a25 protein_coding protein_coding MGP_C3HHeJ_T0053826.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30523890 30527711 - Slc25a25 protein_coding retained_intron MGP_C3HHeJ_T0058157.1 MGP_C3HHeJ_G0026439.1 mouse_genomes_project 2 157830385 157830886 - MGP_C3HHeJ_P0058157 4930519P11Rik protein_coding protein_coding MGP_C3HHeJ_T0055411.1 MGP_C3HHeJ_G0025662.1 mouse_genomes_project 2 85448564 85472490 - MGP_C3HHeJ_P0055411 Olfr1006 protein_coding protein_coding MGP_C3HHeJ_T0001053.1 MGP_C3HHeJ_G0000990.1 mouse_genomes_project 2 68295681 68296547 + TEC TEC MGP_C3HHeJ_T0001016.1 MGP_C3HHeJ_G0000953.1 mouse_genomes_project 2 11993255 11995876 + TEC TEC MGP_C3HHeJ_T0058761.1 MGP_C3HHeJ_G0026554.1 mouse_genomes_project 2 167864575 167872068 - MGP_C3HHeJ_P0058761 Kcns1 protein_coding protein_coding MGP_C3HHeJ_T0099205.1 MGP_C3HHeJ_G0037399.1 mouse_genomes_project 2 103609551 103609658 + Gm23731 snRNA snRNA MGP_C3HHeJ_T0013616.1 MGP_C3HHeJ_G0011720.1 mouse_genomes_project 2 134099960 134101251 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003823.1 MGP_C3HHeJ_G0003418.1 mouse_genomes_project 2 3948323 3951146 + Gm13389 antisense antisense MGP_C3HHeJ_T0054532.1 MGP_C3HHeJ_G0025482.1 mouse_genomes_project 2 57416269 57417232 + MGP_C3HHeJ_P0054532 Gm17409 protein_coding protein_coding MGP_C3HHeJ_T0100439.1 MGP_C3HHeJ_G0038633.1 mouse_genomes_project 2 24659376 24659447 + Gm24134 snoRNA snoRNA MGP_C3HHeJ_T0003853.1 MGP_C3HHeJ_G0003442.1 mouse_genomes_project 2 23939437 23942019 + Gm27196 antisense antisense MGP_C3HHeJ_T0013541.1 MGP_C3HHeJ_G0011645.1 mouse_genomes_project 2 102865245 102865687 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054830.1 MGP_C3HHeJ_G0025533.1 mouse_genomes_project 2 69005149 69019001 + MGP_C3HHeJ_P0054830 Klhl41 protein_coding protein_coding MGP_C3HHeJ_T0099222.1 MGP_C3HHeJ_G0037416.1 mouse_genomes_project 2 143023767 143023874 - Gm23846 snRNA snRNA MGP_C3HHeJ_T0017566.1 MGP_C3HHeJ_G0015190.1 mouse_genomes_project 2 71198005 71207882 + Gm13662 processed_transcript processed_transcript MGP_C3HHeJ_T0013723.1 MGP_C3HHeJ_G0011827.1 mouse_genomes_project 2 174574515 174574821 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013325.1 MGP_C3HHeJ_G0011429.1 mouse_genomes_project 2 23228664 23228904 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055420.1 MGP_C3HHeJ_G0025671.1 mouse_genomes_project 2 85633595 85634528 - MGP_C3HHeJ_P0055420 Olfr1019 protein_coding protein_coding MGP_C3HHeJ_T0053186.1 MGP_C3HHeJ_G0025247.1 mouse_genomes_project 2 25020164 25187498 - MGP_C3HHeJ_P0053186 Vav2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0053187.1 MGP_C3HHeJ_G0025247.1 mouse_genomes_project 2 25020168 25187931 - MGP_C3HHeJ_P0053187 Vav2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053188.1 MGP_C3HHeJ_G0025247.1 mouse_genomes_project 2 25020168 25188052 - MGP_C3HHeJ_P0053188 Vav2 protein_coding protein_coding MGP_C3HHeJ_T0053189.1 MGP_C3HHeJ_G0025247.1 mouse_genomes_project 2 25026519 25035084 - Vav2 protein_coding processed_transcript MGP_C3HHeJ_T0053190.1 MGP_C3HHeJ_G0025247.1 mouse_genomes_project 2 25026983 25036622 - Vav2 protein_coding processed_transcript MGP_C3HHeJ_T0053191.1 MGP_C3HHeJ_G0025247.1 mouse_genomes_project 2 25027645 25029863 - Vav2 protein_coding processed_transcript MGP_C3HHeJ_T0053192.1 MGP_C3HHeJ_G0025247.1 mouse_genomes_project 2 25027645 25029940 - Vav2 protein_coding processed_transcript MGP_C3HHeJ_T0053193.1 MGP_C3HHeJ_G0025247.1 mouse_genomes_project 2 25061125 25103900 - Vav2 protein_coding processed_transcript MGP_C3HHeJ_T0053204.1 MGP_C3HHeJ_G0025249.1 mouse_genomes_project 2 25283755 25289252 + Wdr5 protein_coding processed_transcript MGP_C3HHeJ_T0053205.1 MGP_C3HHeJ_G0025249.1 mouse_genomes_project 2 25283755 25305231 + MGP_C3HHeJ_P0053205 Wdr5 protein_coding protein_coding MGP_C3HHeJ_T0053206.1 MGP_C3HHeJ_G0025249.1 mouse_genomes_project 2 25288359 25303739 + MGP_C3HHeJ_P0053206 Wdr5 protein_coding protein_coding MGP_C3HHeJ_T0053207.1 MGP_C3HHeJ_G0025249.1 mouse_genomes_project 2 25297040 25302051 + Wdr5 protein_coding processed_transcript MGP_C3HHeJ_T0054996.1 MGP_C3HHeJ_G0025562.1 mouse_genomes_project 2 71938096 71950489 + MGP_C3HHeJ_P0054996 Cdca7 protein_coding protein_coding MGP_C3HHeJ_T0054997.1 MGP_C3HHeJ_G0025562.1 mouse_genomes_project 2 71938190 71944435 + MGP_C3HHeJ_P0054997 Cdca7 protein_coding protein_coding MGP_C3HHeJ_T0054998.1 MGP_C3HHeJ_G0025562.1 mouse_genomes_project 2 71938327 71943798 + Cdca7 protein_coding processed_transcript MGP_C3HHeJ_T0054999.1 MGP_C3HHeJ_G0025562.1 mouse_genomes_project 2 71945501 71946681 + Cdca7 protein_coding processed_transcript MGP_C3HHeJ_T0055000.1 MGP_C3HHeJ_G0025562.1 mouse_genomes_project 2 71947044 71948140 + Cdca7 protein_coding processed_transcript MGP_C3HHeJ_T0056940.1 MGP_C3HHeJ_G0026124.1 mouse_genomes_project 2 123839885 123908122 - MGP_C3HHeJ_P0056940 Patl2 protein_coding protein_coding MGP_C3HHeJ_T0053232.1 MGP_C3HHeJ_G0025256.1 mouse_genomes_project 2 26289879 26292992 + MGP_C3HHeJ_P0053232 Mrps2 protein_coding protein_coding MGP_C3HHeJ_T0053233.1 MGP_C3HHeJ_G0025256.1 mouse_genomes_project 2 26289895 26292979 + Mrps2 protein_coding processed_transcript MGP_C3HHeJ_T0053234.1 MGP_C3HHeJ_G0025256.1 mouse_genomes_project 2 26289903 26292979 + Mrps2 protein_coding processed_transcript MGP_C3HHeJ_T0013657.1 MGP_C3HHeJ_G0011761.1 mouse_genomes_project 2 150216822 150217131 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054146.1 MGP_C3HHeJ_G0025393.1 mouse_genomes_project 2 34318413 34349328 + MGP_C3HHeJ_P0054146 Morn5 protein_coding protein_coding MGP_C3HHeJ_T0099234.1 MGP_C3HHeJ_G0037428.1 mouse_genomes_project 2 186123906 186124069 + Gm25184 snRNA snRNA MGP_C3HHeJ_T0004006.1 MGP_C3HHeJ_G0003551.1 mouse_genomes_project 2 131285280 131309054 - AI847159 antisense antisense MGP_C3HHeJ_T0004007.1 MGP_C3HHeJ_G0003551.1 mouse_genomes_project 2 131306569 131309054 - AI847159 antisense antisense MGP_C3HHeJ_T0004008.1 MGP_C3HHeJ_G0003551.1 mouse_genomes_project 2 131306573 131306963 - AI847159 antisense antisense MGP_C3HHeJ_T0004009.1 MGP_C3HHeJ_G0003551.1 mouse_genomes_project 2 131306617 131309089 - AI847159 antisense antisense MGP_C3HHeJ_T0007286.1 MGP_C3HHeJ_G0005969.1 mouse_genomes_project 2 160174959 160184028 - Gm14230 lincRNA lincRNA MGP_C3HHeJ_T0007287.1 MGP_C3HHeJ_G0005969.1 mouse_genomes_project 2 160182029 160184100 - Gm14230 lincRNA lincRNA MGP_C3HHeJ_T0007288.1 MGP_C3HHeJ_G0005969.1 mouse_genomes_project 2 160182679 160184008 - Gm14230 lincRNA lincRNA MGP_C3HHeJ_T0055442.1 MGP_C3HHeJ_G0025692.1 mouse_genomes_project 2 86133118 86154843 - MGP_C3HHeJ_P0055442 protein_coding protein_coding MGP_C3HHeJ_T0052209.1 MGP_C3HHeJ_G0025075.1 mouse_genomes_project 2 8400230 8493906 + Prkcq protein_coding retained_intron MGP_C3HHeJ_T0052210.1 MGP_C3HHeJ_G0025075.1 mouse_genomes_project 2 8400428 8521875 + Prkcq protein_coding retained_intron MGP_C3HHeJ_T0052211.1 MGP_C3HHeJ_G0025075.1 mouse_genomes_project 2 8453036 8539991 + MGP_C3HHeJ_P0052211 Prkcq protein_coding protein_coding MGP_C3HHeJ_T0052212.1 MGP_C3HHeJ_G0025075.1 mouse_genomes_project 2 8456936 8539986 + MGP_C3HHeJ_P0052212 Prkcq protein_coding protein_coding MGP_C3HHeJ_T0052213.1 MGP_C3HHeJ_G0025075.1 mouse_genomes_project 2 8477986 8484526 + Prkcq protein_coding retained_intron MGP_C3HHeJ_T0052214.1 MGP_C3HHeJ_G0025075.1 mouse_genomes_project 2 8480385 8540565 + Prkcq protein_coding processed_transcript MGP_C3HHeJ_T0013540.1 MGP_C3HHeJ_G0011644.1 mouse_genomes_project 2 102233387 102233598 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057557.1 MGP_C3HHeJ_G0026272.1 mouse_genomes_project 2 136939659 136990067 - MGP_C3HHeJ_P0057557 Tmx4 protein_coding protein_coding MGP_C3HHeJ_T0057558.1 MGP_C3HHeJ_G0026272.1 mouse_genomes_project 2 136944477 136990054 - Tmx4 protein_coding processed_transcript MGP_C3HHeJ_T0057559.1 MGP_C3HHeJ_G0026272.1 mouse_genomes_project 2 136952908 136989963 - MGP_C3HHeJ_P0057559 Tmx4 protein_coding protein_coding MGP_C3HHeJ_T0057560.1 MGP_C3HHeJ_G0026272.1 mouse_genomes_project 2 136985431 136990012 - MGP_C3HHeJ_P0057560 Tmx4 protein_coding protein_coding MGP_C3HHeJ_T0007107.1 MGP_C3HHeJ_G0005822.1 mouse_genomes_project 2 43882172 43929984 + Gm13479 lincRNA lincRNA MGP_C3HHeJ_T0003825.1 MGP_C3HHeJ_G0003420.1 mouse_genomes_project 2 7095845 7104342 + Gm13262 antisense antisense MGP_C3HHeJ_T0013415.1 MGP_C3HHeJ_G0011519.1 mouse_genomes_project 2 57694584 57695447 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013722.1 MGP_C3HHeJ_G0011826.1 mouse_genomes_project 2 172409151 172409996 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007088.1 MGP_C3HHeJ_G0005808.1 mouse_genomes_project 2 28624146 28636566 - Gm14486 lincRNA lincRNA MGP_C3HHeJ_T0007089.1 MGP_C3HHeJ_G0005808.1 mouse_genomes_project 2 28624291 28646261 - Gm14486 lincRNA lincRNA MGP_C3HHeJ_T0055097.1 MGP_C3HHeJ_G0025587.1 mouse_genomes_project 2 74359104 74414122 + MGP_C3HHeJ_P0055097 Mtx2 protein_coding protein_coding MGP_C3HHeJ_T0055098.1 MGP_C3HHeJ_G0025587.1 mouse_genomes_project 2 74359131 74404501 + Mtx2 protein_coding retained_intron MGP_C3HHeJ_T0055099.1 MGP_C3HHeJ_G0025587.1 mouse_genomes_project 2 74404667 74412195 + Mtx2 protein_coding retained_intron MGP_C3HHeJ_T0057667.1 MGP_C3HHeJ_G0026297.1 mouse_genomes_project 2 146606281 146638740 + MGP_C3HHeJ_P0057667 Dstn protein_coding protein_coding MGP_C3HHeJ_T0052961.1 MGP_C3HHeJ_G0025209.1 mouse_genomes_project 2 23626859 23686069 - MGP_C3HHeJ_P0052961 protein_coding protein_coding MGP_C3HHeJ_T0052962.1 MGP_C3HHeJ_G0025209.1 mouse_genomes_project 2 23638927 23666832 - MGP_C3HHeJ_P0052962 protein_coding protein_coding MGP_C3HHeJ_T0052963.1 MGP_C3HHeJ_G0025209.1 mouse_genomes_project 2 23638946 23665741 - MGP_C3HHeJ_P0052963 protein_coding protein_coding MGP_C3HHeJ_T0052964.1 MGP_C3HHeJ_G0025209.1 mouse_genomes_project 2 23639120 23666740 - MGP_C3HHeJ_P0052964 protein_coding protein_coding MGP_C3HHeJ_T0052965.1 MGP_C3HHeJ_G0025209.1 mouse_genomes_project 2 23650671 23686216 - MGP_C3HHeJ_P0052965 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052966.1 MGP_C3HHeJ_G0025209.1 mouse_genomes_project 2 23665734 23686064 - MGP_C3HHeJ_P0052966 protein_coding protein_coding MGP_C3HHeJ_T0013398.1 MGP_C3HHeJ_G0011502.1 mouse_genomes_project 2 51327304 51327587 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007234.1 MGP_C3HHeJ_G0005925.1 mouse_genomes_project 2 122141349 122147977 + Gm26899 lincRNA lincRNA MGP_C3HHeJ_T0053880.1 MGP_C3HHeJ_G0025352.1 mouse_genomes_project 2 30810354 30819017 - Cdk9 protein_coding retained_intron MGP_C3HHeJ_T0053881.1 MGP_C3HHeJ_G0025352.1 mouse_genomes_project 2 30812024 30820237 - MGP_C3HHeJ_P0053881 Cdk9 protein_coding protein_coding MGP_C3HHeJ_T0053882.1 MGP_C3HHeJ_G0025352.1 mouse_genomes_project 2 30812423 30821046 - MGP_C3HHeJ_P0053882 Cdk9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053883.1 MGP_C3HHeJ_G0025352.1 mouse_genomes_project 2 30812691 30820980 - MGP_C3HHeJ_P0053883 Cdk9 protein_coding protein_coding MGP_C3HHeJ_T0053884.1 MGP_C3HHeJ_G0025352.1 mouse_genomes_project 2 30814293 30817691 - Cdk9 protein_coding retained_intron MGP_C3HHeJ_T0053885.1 MGP_C3HHeJ_G0025352.1 mouse_genomes_project 2 30817501 30818319 - Cdk9 protein_coding retained_intron MGP_C3HHeJ_T0053886.1 MGP_C3HHeJ_G0025352.1 mouse_genomes_project 2 30817625 30818472 - Cdk9 protein_coding retained_intron MGP_C3HHeJ_T0053887.1 MGP_C3HHeJ_G0025352.1 mouse_genomes_project 2 30817825 30820727 - MGP_C3HHeJ_P0053887 Cdk9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053888.1 MGP_C3HHeJ_G0025352.1 mouse_genomes_project 2 30818127 30820223 - MGP_C3HHeJ_P0053888 Cdk9 protein_coding protein_coding MGP_C3HHeJ_T0054902.1 MGP_C3HHeJ_G0025548.1 mouse_genomes_project 2 70089855 70205708 - Tlk1 protein_coding processed_transcript MGP_C3HHeJ_T0054903.1 MGP_C3HHeJ_G0025548.1 mouse_genomes_project 2 70089855 70206039 - MGP_C3HHeJ_P0054903 Tlk1 protein_coding protein_coding MGP_C3HHeJ_T0054904.1 MGP_C3HHeJ_G0025548.1 mouse_genomes_project 2 70091589 70095673 - Tlk1 protein_coding processed_transcript MGP_C3HHeJ_T0054905.1 MGP_C3HHeJ_G0025548.1 mouse_genomes_project 2 70093760 70095353 - Tlk1 protein_coding processed_transcript MGP_C3HHeJ_T0054906.1 MGP_C3HHeJ_G0025548.1 mouse_genomes_project 2 70123419 70205634 - Tlk1 protein_coding processed_transcript MGP_C3HHeJ_T0054907.1 MGP_C3HHeJ_G0025548.1 mouse_genomes_project 2 70126653 70205622 - Tlk1 protein_coding processed_transcript MGP_C3HHeJ_T0054908.1 MGP_C3HHeJ_G0025548.1 mouse_genomes_project 2 70128402 70205539 - Tlk1 protein_coding processed_transcript MGP_C3HHeJ_T0054480.1 MGP_C3HHeJ_G0025469.1 mouse_genomes_project 2 51655421 51949857 + MGP_C3HHeJ_P0054480 Fmnl2 protein_coding protein_coding MGP_C3HHeJ_T0054481.1 MGP_C3HHeJ_G0025469.1 mouse_genomes_project 2 51655429 51947935 + MGP_C3HHeJ_P0054481 Fmnl2 protein_coding protein_coding MGP_C3HHeJ_T0054482.1 MGP_C3HHeJ_G0025469.1 mouse_genomes_project 2 51655429 51950258 + MGP_C3HHeJ_P0054482 Fmnl2 protein_coding protein_coding MGP_C3HHeJ_T0054483.1 MGP_C3HHeJ_G0025469.1 mouse_genomes_project 2 51655704 51949864 + MGP_C3HHeJ_P0054483 Fmnl2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0054484.1 MGP_C3HHeJ_G0025469.1 mouse_genomes_project 2 51930524 51949857 + MGP_C3HHeJ_P0054484 Fmnl2 protein_coding protein_coding MGP_C3HHeJ_T0054485.1 MGP_C3HHeJ_G0025469.1 mouse_genomes_project 2 51936396 51949857 + MGP_C3HHeJ_P0054485 Fmnl2 protein_coding protein_coding MGP_C3HHeJ_T0054486.1 MGP_C3HHeJ_G0025469.1 mouse_genomes_project 2 51942066 51948260 + MGP_C3HHeJ_P0054486 Fmnl2 protein_coding protein_coding MGP_C3HHeJ_T0011430.1 MGP_C3HHeJ_G0009563.1 mouse_genomes_project 2 178623331 178623453 + Gm27869 misc_RNA misc_RNA MGP_C3HHeJ_T0058841.1 MGP_C3HHeJ_G0026590.1 mouse_genomes_project 2 168533525 168536106 - MGP_C3HHeJ_P0058841 Tnnc2 protein_coding protein_coding MGP_C3HHeJ_T0058842.1 MGP_C3HHeJ_G0026590.1 mouse_genomes_project 2 168534308 168536332 - Tnnc2 protein_coding processed_transcript MGP_C3HHeJ_T0058557.1 MGP_C3HHeJ_G0026505.1 mouse_genomes_project 2 161470820 161522757 + MGP_C3HHeJ_P0058557 Rprd1b protein_coding protein_coding MGP_C3HHeJ_T0058558.1 MGP_C3HHeJ_G0026505.1 mouse_genomes_project 2 161470831 161491078 + Rprd1b protein_coding retained_intron MGP_C3HHeJ_T0058559.1 MGP_C3HHeJ_G0026505.1 mouse_genomes_project 2 161471015 161522757 + Rprd1b protein_coding processed_transcript MGP_C3HHeJ_T0058560.1 MGP_C3HHeJ_G0026505.1 mouse_genomes_project 2 161471024 161522757 + MGP_C3HHeJ_P0058560 Rprd1b protein_coding protein_coding MGP_C3HHeJ_T0058561.1 MGP_C3HHeJ_G0026505.1 mouse_genomes_project 2 161471044 161522757 + MGP_C3HHeJ_P0058561 Rprd1b protein_coding protein_coding MGP_C3HHeJ_T0058562.1 MGP_C3HHeJ_G0026505.1 mouse_genomes_project 2 161471122 161580724 + MGP_C3HHeJ_P0058562 Rprd1b protein_coding protein_coding MGP_C3HHeJ_T0058563.1 MGP_C3HHeJ_G0026505.1 mouse_genomes_project 2 161485790 161519623 + MGP_C3HHeJ_P0058563 Rprd1b protein_coding protein_coding MGP_C3HHeJ_T0058564.1 MGP_C3HHeJ_G0026505.1 mouse_genomes_project 2 161490326 161514433 + MGP_C3HHeJ_P0058564 Rprd1b protein_coding protein_coding MGP_C3HHeJ_T0010400.1 MGP_C3HHeJ_G0008533.1 mouse_genomes_project 2 173115584 173115705 + Gm26469 miRNA miRNA MGP_C3HHeJ_T0099203.1 MGP_C3HHeJ_G0037397.1 mouse_genomes_project 2 85682239 85682419 - Gm24037 snRNA snRNA MGP_C3HHeJ_T0055412.1 MGP_C3HHeJ_G0025663.1 mouse_genomes_project 2 85455915 85459629 - MGP_C3HHeJ_P0055412 Olfr154 protein_coding protein_coding MGP_C3HHeJ_T0058142.1 MGP_C3HHeJ_G0026434.1 mouse_genomes_project 2 157753971 157769533 - MGP_C3HHeJ_P0058142 Necab3 protein_coding protein_coding MGP_C3HHeJ_T0058143.1 MGP_C3HHeJ_G0026434.1 mouse_genomes_project 2 157753971 157769548 - MGP_C3HHeJ_P0058143 Necab3 protein_coding protein_coding MGP_C3HHeJ_T0058144.1 MGP_C3HHeJ_G0026434.1 mouse_genomes_project 2 157754617 157756367 - Necab3 protein_coding retained_intron MGP_C3HHeJ_T0058145.1 MGP_C3HHeJ_G0026434.1 mouse_genomes_project 2 157756618 157769572 - MGP_C3HHeJ_P0058145 Necab3 protein_coding protein_coding MGP_C3HHeJ_T0058147.1 MGP_C3HHeJ_G0026434.1 mouse_genomes_project 2 157756713 157769526 - Necab3 protein_coding processed_transcript MGP_C3HHeJ_T0058151.1 MGP_C3HHeJ_G0026434.1 mouse_genomes_project 2 157764972 157769534 - Necab3 protein_coding retained_intron MGP_C3HHeJ_T0058152.1 MGP_C3HHeJ_G0026434.1 mouse_genomes_project 2 157765350 157767961 - Necab3 protein_coding retained_intron MGP_C3HHeJ_T0010310.1 MGP_C3HHeJ_G0008443.1 mouse_genomes_project 2 28691609 28691693 + Mir3089 miRNA miRNA MGP_C3HHeJ_T0052725.1 MGP_C3HHeJ_G0025159.1 mouse_genomes_project 2 22867313 22870809 + MGP_C3HHeJ_P0052725 Fam166a protein_coding protein_coding MGP_C3HHeJ_T0052726.1 MGP_C3HHeJ_G0025159.1 mouse_genomes_project 2 22869926 22870809 + Fam166a protein_coding processed_transcript MGP_C3HHeJ_T0054965.1 MGP_C3HHeJ_G0025558.1 mouse_genomes_project 2 71193708 71270780 + Itga6 protein_coding processed_transcript MGP_C3HHeJ_T0054966.1 MGP_C3HHeJ_G0025558.1 mouse_genomes_project 2 71237013 71271469 + Itga6 protein_coding processed_transcript MGP_C3HHeJ_T0054967.1 MGP_C3HHeJ_G0025558.1 mouse_genomes_project 2 71237024 71307017 + MGP_C3HHeJ_P0054967 Itga6 protein_coding protein_coding MGP_C3HHeJ_T0054968.1 MGP_C3HHeJ_G0025558.1 mouse_genomes_project 2 71237223 71308597 + MGP_C3HHeJ_P0054968 Itga6 protein_coding protein_coding MGP_C3HHeJ_T0054969.1 MGP_C3HHeJ_G0025558.1 mouse_genomes_project 2 71288413 71289247 + Itga6 protein_coding processed_transcript MGP_C3HHeJ_T0054970.1 MGP_C3HHeJ_G0025558.1 mouse_genomes_project 2 71299361 71308662 + Itga6 protein_coding processed_transcript MGP_C3HHeJ_T0057844.1 MGP_C3HHeJ_G0026348.1 mouse_genomes_project 2 153584685 153634833 - MGP_C3HHeJ_P0057844 Acss1 protein_coding protein_coding MGP_C3HHeJ_T0057845.1 MGP_C3HHeJ_G0026348.1 mouse_genomes_project 2 153594894 153604423 - Acss1 protein_coding processed_transcript MGP_C3HHeJ_T0057846.1 MGP_C3HHeJ_G0026348.1 mouse_genomes_project 2 153594974 153604421 - Acss1 protein_coding processed_transcript MGP_C3HHeJ_T0057847.1 MGP_C3HHeJ_G0026348.1 mouse_genomes_project 2 153604287 153635075 - Acss1 protein_coding processed_transcript MGP_C3HHeJ_T0057848.1 MGP_C3HHeJ_G0026348.1 mouse_genomes_project 2 153626175 153634789 - Acss1 protein_coding retained_intron MGP_C3HHeJ_T0058096.1 MGP_C3HHeJ_G0026420.1 mouse_genomes_project 2 157094468 157109205 + MGP_C3HHeJ_P0058096 Bpifb3 protein_coding protein_coding MGP_C3HHeJ_T0058097.1 MGP_C3HHeJ_G0026420.1 mouse_genomes_project 2 157094632 157109202 + MGP_C3HHeJ_P0058097 Bpifb3 protein_coding protein_coding MGP_C3HHeJ_T0013504.1 MGP_C3HHeJ_G0011608.1 mouse_genomes_project 2 87455476 87461579 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013298.1 MGP_C3HHeJ_G0011402.1 mouse_genomes_project 2 15444024 15444289 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057320.1 MGP_C3HHeJ_G0026220.1 mouse_genomes_project 2 132579513 132582536 + MGP_C3HHeJ_P0057320 Gm28372 protein_coding protein_coding MGP_C3HHeJ_T0007330.1 MGP_C3HHeJ_G0006006.1 mouse_genomes_project 2 173462082 173468506 + Gm14250 lincRNA lincRNA MGP_C3HHeJ_T0053401.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27886926 27955501 + MGP_C3HHeJ_P0053401 Sptan1 protein_coding protein_coding MGP_C3HHeJ_T0053402.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27886926 27955504 + MGP_C3HHeJ_P0053402 Sptan1 protein_coding protein_coding MGP_C3HHeJ_T0053403.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27887043 27915212 + Sptan1 protein_coding retained_intron MGP_C3HHeJ_T0053404.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27887045 27888516 + Sptan1 protein_coding retained_intron MGP_C3HHeJ_T0053405.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27887046 27955498 + MGP_C3HHeJ_P0053405 Sptan1 protein_coding protein_coding MGP_C3HHeJ_T0053406.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27887046 27955504 + MGP_C3HHeJ_P0053406 Sptan1 protein_coding protein_coding MGP_C3HHeJ_T0053407.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27887046 27904950 + MGP_C3HHeJ_P0053407 Sptan1 protein_coding protein_coding MGP_C3HHeJ_T0053408.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27887049 27955504 + MGP_C3HHeJ_P0053408 Sptan1 protein_coding protein_coding MGP_C3HHeJ_T0053409.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27899677 27955237 + MGP_C3HHeJ_P0053409 Sptan1 protein_coding protein_coding MGP_C3HHeJ_T0053410.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27913130 27915205 + Sptan1 protein_coding retained_intron MGP_C3HHeJ_T0053411.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27925941 27932160 + Sptan1 protein_coding retained_intron MGP_C3HHeJ_T0053412.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27928145 27930704 + Sptan1 protein_coding retained_intron MGP_C3HHeJ_T0053413.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27945873 27949036 + Sptan1 protein_coding retained_intron MGP_C3HHeJ_T0053414.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27951616 27954570 + Sptan1 protein_coding retained_intron MGP_C3HHeJ_T0053415.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27951649 27954554 + Sptan1 protein_coding retained_intron MGP_C3HHeJ_T0053416.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27954361 27955228 + Sptan1 protein_coding retained_intron MGP_C3HHeJ_T0054431.1 MGP_C3HHeJ_G0025460.1 mouse_genomes_project 2 50343747 50344645 + MGP_C3HHeJ_P0054431 Tas2r134 protein_coding protein_coding MGP_C3HHeJ_T0059582.1 MGP_C3HHeJ_G0026747.1 mouse_genomes_project 2 186209499 186213494 - MGP_C3HHeJ_P0059582 Samd10 protein_coding protein_coding MGP_C3HHeJ_T0059583.1 MGP_C3HHeJ_G0026747.1 mouse_genomes_project 2 186209502 186213480 - MGP_C3HHeJ_P0059583 Samd10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059584.1 MGP_C3HHeJ_G0026747.1 mouse_genomes_project 2 186211073 186211888 - Samd10 protein_coding retained_intron MGP_C3HHeJ_T0058856.1 MGP_C3HHeJ_G0026594.1 mouse_genomes_project 2 168582591 168586777 + MGP_C3HHeJ_P0058856 Zswim1 protein_coding protein_coding MGP_C3HHeJ_T0058857.1 MGP_C3HHeJ_G0026594.1 mouse_genomes_project 2 168582918 168585174 + MGP_C3HHeJ_P0058857 Zswim1 protein_coding protein_coding MGP_C3HHeJ_T0054170.1 MGP_C3HHeJ_G0025399.1 mouse_genomes_project 2 34704201 34705131 + MGP_C3HHeJ_P0054170 Olfr339 protein_coding protein_coding MGP_C3HHeJ_T0057741.1 MGP_C3HHeJ_G0026314.1 mouse_genomes_project 2 148659921 148672954 + MGP_C3HHeJ_P0057741 Naa20 protein_coding protein_coding MGP_C3HHeJ_T0057742.1 MGP_C3HHeJ_G0026314.1 mouse_genomes_project 2 148659933 148672080 + MGP_C3HHeJ_P0057742 Naa20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057743.1 MGP_C3HHeJ_G0026314.1 mouse_genomes_project 2 148659937 148672086 + MGP_C3HHeJ_P0057743 Naa20 protein_coding protein_coding MGP_C3HHeJ_T0057744.1 MGP_C3HHeJ_G0026314.1 mouse_genomes_project 2 148659942 148672160 + MGP_C3HHeJ_P0057744 Naa20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057745.1 MGP_C3HHeJ_G0026314.1 mouse_genomes_project 2 148659958 148672418 + MGP_C3HHeJ_P0057745 Naa20 protein_coding protein_coding MGP_C3HHeJ_T0057746.1 MGP_C3HHeJ_G0026314.1 mouse_genomes_project 2 148659974 148666918 + MGP_C3HHeJ_P0057746 Naa20 protein_coding protein_coding MGP_C3HHeJ_T0057747.1 MGP_C3HHeJ_G0026314.1 mouse_genomes_project 2 148659977 148668523 + Naa20 protein_coding retained_intron MGP_C3HHeJ_T0057748.1 MGP_C3HHeJ_G0026314.1 mouse_genomes_project 2 148668413 148672263 + Naa20 protein_coding retained_intron MGP_C3HHeJ_T0057808.1 MGP_C3HHeJ_G0026331.1 mouse_genomes_project 2 151614446 151619526 + MGP_C3HHeJ_P0057808 Cstl1 protein_coding protein_coding MGP_C3HHeJ_T0057809.1 MGP_C3HHeJ_G0026331.1 mouse_genomes_project 2 151614449 151619471 + MGP_C3HHeJ_P0057809 Cstl1 protein_coding protein_coding MGP_C3HHeJ_T0057810.1 MGP_C3HHeJ_G0026331.1 mouse_genomes_project 2 151614484 151619471 + MGP_C3HHeJ_P0057810 Cstl1 protein_coding protein_coding MGP_C3HHeJ_T0007332.1 MGP_C3HHeJ_G0006008.1 mouse_genomes_project 2 173552411 173578504 + Gm14249 lincRNA lincRNA MGP_C3HHeJ_T0007151.1 MGP_C3HHeJ_G0005860.1 mouse_genomes_project 2 74217882 74219725 + Gm14396 lincRNA lincRNA MGP_C3HHeJ_T0007152.1 MGP_C3HHeJ_G0005860.1 mouse_genomes_project 2 74217963 74219725 + Gm14396 lincRNA lincRNA MGP_C3HHeJ_T0013370.1 MGP_C3HHeJ_G0011474.1 mouse_genomes_project 2 38554571 38554938 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053229.1 MGP_C3HHeJ_G0025255.1 mouse_genomes_project 2 26283807 26287666 - 1700007K13Rik protein_coding processed_transcript MGP_C3HHeJ_T0053230.1 MGP_C3HHeJ_G0025255.1 mouse_genomes_project 2 26283807 26288146 - MGP_C3HHeJ_P0053230 1700007K13Rik protein_coding protein_coding MGP_C3HHeJ_T0053231.1 MGP_C3HHeJ_G0025255.1 mouse_genomes_project 2 26284154 26288130 - MGP_C3HHeJ_P0053231 1700007K13Rik protein_coding protein_coding MGP_C3HHeJ_T0055013.1 MGP_C3HHeJ_G0025566.1 mouse_genomes_project 2 72780104 72785651 + MGP_C3HHeJ_P0055013 Sp9 protein_coding protein_coding MGP_C3HHeJ_T0055014.1 MGP_C3HHeJ_G0025566.1 mouse_genomes_project 2 72780145 72794479 + Sp9 protein_coding processed_transcript MGP_C3HHeJ_T0013569.1 MGP_C3HHeJ_G0011673.1 mouse_genomes_project 2 112143142 112147886 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101931.1 MGP_C3HHeJ_G0039896.1 mouse_genomes_project 2 156858158 156894693 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0054156.1 MGP_C3HHeJ_G0025395.1 mouse_genomes_project 2 34385714 34405824 - MGP_C3HHeJ_P0054156 Rbm18 protein_coding protein_coding MGP_C3HHeJ_T0054157.1 MGP_C3HHeJ_G0025395.1 mouse_genomes_project 2 34387235 34405819 - MGP_C3HHeJ_P0054157 Rbm18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054158.1 MGP_C3HHeJ_G0025395.1 mouse_genomes_project 2 34387410 34405858 - MGP_C3HHeJ_P0054158 Rbm18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054159.1 MGP_C3HHeJ_G0025395.1 mouse_genomes_project 2 34395448 34405854 - Rbm18 protein_coding retained_intron MGP_C3HHeJ_T0055199.1 MGP_C3HHeJ_G0025607.1 mouse_genomes_project 2 78530430 78533600 + MGP_C3HHeJ_P0055199 Ube2e3 protein_coding protein_coding MGP_C3HHeJ_T0055200.1 MGP_C3HHeJ_G0025607.1 mouse_genomes_project 2 78530506 78579267 + MGP_C3HHeJ_P0055200 Ube2e3 protein_coding protein_coding MGP_C3HHeJ_T0055201.1 MGP_C3HHeJ_G0025607.1 mouse_genomes_project 2 78531847 78586833 + MGP_C3HHeJ_P0055201 Ube2e3 protein_coding protein_coding MGP_C3HHeJ_T0055202.1 MGP_C3HHeJ_G0025607.1 mouse_genomes_project 2 78532040 78580079 + Ube2e3 protein_coding retained_intron MGP_C3HHeJ_T0055203.1 MGP_C3HHeJ_G0025607.1 mouse_genomes_project 2 78532134 78535752 + Ube2e3 protein_coding retained_intron MGP_C3HHeJ_T0055204.1 MGP_C3HHeJ_G0025607.1 mouse_genomes_project 2 78532478 78585837 + MGP_C3HHeJ_P0055204 Ube2e3 protein_coding protein_coding MGP_C3HHeJ_T0055205.1 MGP_C3HHeJ_G0025607.1 mouse_genomes_project 2 78583936 78585592 + Ube2e3 protein_coding retained_intron MGP_C3HHeJ_T0013429.1 MGP_C3HHeJ_G0011533.1 mouse_genomes_project 2 60983870 60984189 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013637.1 MGP_C3HHeJ_G0011741.1 mouse_genomes_project 2 145231231 145232161 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055375.1 MGP_C3HHeJ_G0025648.1 mouse_genomes_project 2 84734940 84740401 + Prg3 protein_coding processed_transcript MGP_C3HHeJ_T0055376.1 MGP_C3HHeJ_G0025648.1 mouse_genomes_project 2 84734940 84740500 + MGP_C3HHeJ_P0055376 Prg3 protein_coding protein_coding MGP_C3HHeJ_T0057185.1 MGP_C3HHeJ_G0026184.1 mouse_genomes_project 2 129722649 129746078 - MGP_C3HHeJ_P0057185 Mal protein_coding protein_coding MGP_C3HHeJ_T0057186.1 MGP_C3HHeJ_G0026184.1 mouse_genomes_project 2 129724297 129745602 - MGP_C3HHeJ_P0057186 Mal protein_coding protein_coding MGP_C3HHeJ_T0013544.1 MGP_C3HHeJ_G0011648.1 mouse_genomes_project 2 103011881 103012175 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013335.1 MGP_C3HHeJ_G0011439.1 mouse_genomes_project 2 29573600 29574395 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054672.1 MGP_C3HHeJ_G0025502.1 mouse_genomes_project 2 61490059 61499179 - MGP_C3HHeJ_P0054672 Gcg protein_coding protein_coding MGP_C3HHeJ_T0054673.1 MGP_C3HHeJ_G0025502.1 mouse_genomes_project 2 61491261 61499174 - MGP_C3HHeJ_P0054673 Gcg protein_coding protein_coding MGP_C3HHeJ_T0054674.1 MGP_C3HHeJ_G0025502.1 mouse_genomes_project 2 61492099 61496207 - Gcg protein_coding processed_transcript MGP_C3HHeJ_T0054786.1 MGP_C3HHeJ_G0025523.1 mouse_genomes_project 2 67863361 67911309 + MGP_C3HHeJ_P0054786 4933409G03Rik protein_coding protein_coding MGP_C3HHeJ_T0054787.1 MGP_C3HHeJ_G0025523.1 mouse_genomes_project 2 67884173 67909627 + MGP_C3HHeJ_P0054787 4933409G03Rik protein_coding protein_coding MGP_C3HHeJ_T0055406.1 MGP_C3HHeJ_G0025657.1 mouse_genomes_project 2 85190695 85191640 - MGP_C3HHeJ_P0055406 Olfr993 protein_coding protein_coding MGP_C3HHeJ_T0056323.1 MGP_C3HHeJ_G0025983.1 mouse_genomes_project 2 112612535 112615258 - MGP_C3HHeJ_P0056323 Olfr1290 protein_coding protein_coding MGP_C3HHeJ_T0098114.1 MGP_C3HHeJ_G0036326.1 mouse_genomes_project 2 167858369 167858487 - n-R5s207 rRNA rRNA MGP_C3HHeJ_T0058227.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158801366 158846765 + MGP_C3HHeJ_P0058227 Acss2 protein_coding protein_coding MGP_C3HHeJ_T0058228.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158801451 158808661 + Acss2 protein_coding retained_intron MGP_C3HHeJ_T0058229.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158801475 158871913 + MGP_C3HHeJ_P0058229 Acss2 protein_coding protein_coding MGP_C3HHeJ_T0058230.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158801487 158836352 + Acss2 protein_coding retained_intron MGP_C3HHeJ_T0058231.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158801525 158846099 + MGP_C3HHeJ_P0058231 Acss2 protein_coding protein_coding MGP_C3HHeJ_T0058232.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158801525 158846099 + MGP_C3HHeJ_P0058232 Acss2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058233.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158833184 158833822 + Acss2 protein_coding retained_intron MGP_C3HHeJ_T0058234.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158833195 158841319 + MGP_C3HHeJ_P0058234 Acss2 protein_coding protein_coding MGP_C3HHeJ_T0058239.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158854250 158871455 + Acss2 protein_coding processed_transcript MGP_C3HHeJ_T0058240.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158858547 158862675 + Acss2 protein_coding retained_intron MGP_C3HHeJ_T0056213.1 MGP_C3HHeJ_G0025949.1 mouse_genomes_project 2 106181968 106195017 - MGP_C3HHeJ_P0056213 Rcn1 protein_coding protein_coding MGP_C3HHeJ_T0056214.1 MGP_C3HHeJ_G0025949.1 mouse_genomes_project 2 106182606 106191057 - Rcn1 protein_coding retained_intron MGP_C3HHeJ_T0013396.1 MGP_C3HHeJ_G0011500.1 mouse_genomes_project 2 50680112 50680649 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055057.1 MGP_C3HHeJ_G0025574.1 mouse_genomes_project 2 73438466 73441346 - MGP_C3HHeJ_P0055057 Atp5g3 protein_coding protein_coding MGP_C3HHeJ_T0055058.1 MGP_C3HHeJ_G0025574.1 mouse_genomes_project 2 73438466 73441345 - MGP_C3HHeJ_P0055058 Atp5g3 protein_coding protein_coding MGP_C3HHeJ_T0055059.1 MGP_C3HHeJ_G0025574.1 mouse_genomes_project 2 73438750 73441302 - Atp5g3 protein_coding processed_transcript MGP_C3HHeJ_T0055060.1 MGP_C3HHeJ_G0025574.1 mouse_genomes_project 2 73439202 73440479 - Atp5g3 protein_coding processed_transcript MGP_C3HHeJ_T0055061.1 MGP_C3HHeJ_G0025574.1 mouse_genomes_project 2 73439337 73441311 - Atp5g3 protein_coding processed_transcript MGP_C3HHeJ_T0056490.1 MGP_C3HHeJ_G0026042.1 mouse_genomes_project 2 120275062 120280297 + MGP_C3HHeJ_P0056490 Phgr1 protein_coding protein_coding MGP_C3HHeJ_T0056491.1 MGP_C3HHeJ_G0026042.1 mouse_genomes_project 2 120275062 120280298 + MGP_C3HHeJ_P0056491 Phgr1 protein_coding protein_coding MGP_C3HHeJ_T0052815.1 MGP_C3HHeJ_G0025177.1 mouse_genomes_project 2 23063954 23069402 + MGP_C3HHeJ_P0052815 Entpd2 protein_coding protein_coding MGP_C3HHeJ_T0052816.1 MGP_C3HHeJ_G0025177.1 mouse_genomes_project 2 23063996 23069373 + Entpd2 protein_coding processed_transcript MGP_C3HHeJ_T0052817.1 MGP_C3HHeJ_G0025177.1 mouse_genomes_project 2 23066833 23067930 + Entpd2 protein_coding processed_transcript MGP_C3HHeJ_T0101901.1 MGP_C3HHeJ_G0039866.1 mouse_genomes_project 2 86538966 86545268 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101906.1 MGP_C3HHeJ_G0039871.1 mouse_genomes_project 2 87908388 87908701 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017513.1 MGP_C3HHeJ_G0015158.1 mouse_genomes_project 2 11887101 11917161 + Gm13266 processed_transcript lincRNA MGP_C3HHeJ_T0017514.1 MGP_C3HHeJ_G0015158.1 mouse_genomes_project 2 11887101 11910137 + Gm13266 processed_transcript retained_intron MGP_C3HHeJ_T0017515.1 MGP_C3HHeJ_G0015158.1 mouse_genomes_project 2 11887109 11909957 + Gm13266 processed_transcript lincRNA MGP_C3HHeJ_T0101171.1 MGP_C3HHeJ_G0039321.1 mouse_genomes_project 2 50140460 50140815 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101172.1 MGP_C3HHeJ_G0039321.1 mouse_genomes_project 2 50140608 50140759 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0059237.1 MGP_C3HHeJ_G0026680.1 mouse_genomes_project 2 178398354 178415503 + MGP_C3HHeJ_P0059237 Stx16 protein_coding protein_coding MGP_C3HHeJ_T0059238.1 MGP_C3HHeJ_G0026680.1 mouse_genomes_project 2 178398364 178413804 + MGP_C3HHeJ_P0059238 Stx16 protein_coding protein_coding MGP_C3HHeJ_T0059239.1 MGP_C3HHeJ_G0026680.1 mouse_genomes_project 2 178398368 178416596 + MGP_C3HHeJ_P0059239 Stx16 protein_coding protein_coding MGP_C3HHeJ_T0059240.1 MGP_C3HHeJ_G0026680.1 mouse_genomes_project 2 178398968 178422838 + MGP_C3HHeJ_P0059240 Stx16 protein_coding protein_coding MGP_C3HHeJ_T0059241.1 MGP_C3HHeJ_G0026680.1 mouse_genomes_project 2 178399104 178422837 + MGP_C3HHeJ_P0059241 Stx16 protein_coding protein_coding MGP_C3HHeJ_T0059242.1 MGP_C3HHeJ_G0026680.1 mouse_genomes_project 2 178399112 178420037 + MGP_C3HHeJ_P0059242 Stx16 protein_coding protein_coding MGP_C3HHeJ_T0013353.1 MGP_C3HHeJ_G0011457.1 mouse_genomes_project 2 35367181 35372534 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057973.1 MGP_C3HHeJ_G0026388.1 mouse_genomes_project 2 155669774 155677111 - Defb45 protein_coding processed_transcript MGP_C3HHeJ_T0057974.1 MGP_C3HHeJ_G0026388.1 mouse_genomes_project 2 155669774 155674194 - MGP_C3HHeJ_P0057974 Defb45 protein_coding protein_coding MGP_C3HHeJ_T0055247.1 MGP_C3HHeJ_G0025616.1 mouse_genomes_project 2 80144511 80182264 - MGP_C3HHeJ_P0055247 Frzb protein_coding protein_coding MGP_C3HHeJ_T0055248.1 MGP_C3HHeJ_G0025616.1 mouse_genomes_project 2 80145654 80173245 - Frzb protein_coding processed_transcript MGP_C3HHeJ_T0055235.1 MGP_C3HHeJ_G0025613.1 mouse_genomes_project 2 79541253 79851655 - MGP_C3HHeJ_P0055235 Pde1a protein_coding protein_coding MGP_C3HHeJ_T0055236.1 MGP_C3HHeJ_G0025613.1 mouse_genomes_project 2 79564252 79615729 - MGP_C3HHeJ_P0055236 Pde1a protein_coding protein_coding MGP_C3HHeJ_T0055237.1 MGP_C3HHeJ_G0025613.1 mouse_genomes_project 2 79564252 79615729 - MGP_C3HHeJ_P0055237 Pde1a protein_coding protein_coding MGP_C3HHeJ_T0055238.1 MGP_C3HHeJ_G0025613.1 mouse_genomes_project 2 79570351 79635860 - MGP_C3HHeJ_P0055238 Pde1a protein_coding protein_coding MGP_C3HHeJ_T0055239.1 MGP_C3HHeJ_G0025613.1 mouse_genomes_project 2 79611980 79750756 - Pde1a protein_coding processed_transcript MGP_C3HHeJ_T0055240.1 MGP_C3HHeJ_G0025613.1 mouse_genomes_project 2 79621247 79852279 - Pde1a protein_coding processed_transcript MGP_C3HHeJ_T0013330.1 MGP_C3HHeJ_G0011434.1 mouse_genomes_project 2 24789178 24790056 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003890.1 MGP_C3HHeJ_G0003470.1 mouse_genomes_project 2 34081961 34086157 + 9030204H09Rik antisense antisense MGP_C3HHeJ_T0013597.1 MGP_C3HHeJ_G0011701.1 mouse_genomes_project 2 124223584 124224177 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055399.1 MGP_C3HHeJ_G0025652.1 mouse_genomes_project 2 84878781 84882483 + MGP_C3HHeJ_P0055399 Aplnr protein_coding protein_coding MGP_C3HHeJ_T0055400.1 MGP_C3HHeJ_G0025652.1 mouse_genomes_project 2 84879949 84882481 + MGP_C3HHeJ_P0055400 Aplnr protein_coding protein_coding MGP_C3HHeJ_T0057835.1 MGP_C3HHeJ_G0026343.1 mouse_genomes_project 2 153007572 153035495 - MGP_C3HHeJ_P0057835 Zfp120 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057836.1 MGP_C3HHeJ_G0026343.1 mouse_genomes_project 2 153007641 153035459 - MGP_C3HHeJ_P0057836 Zfp120 protein_coding protein_coding MGP_C3HHeJ_T0057837.1 MGP_C3HHeJ_G0026343.1 mouse_genomes_project 2 153012795 153035473 - Zfp120 protein_coding processed_transcript MGP_C3HHeJ_T0057614.1 MGP_C3HHeJ_G0026282.1 mouse_genomes_project 2 140720203 141005726 + Btbd3 protein_coding processed_transcript MGP_C3HHeJ_T0057615.1 MGP_C3HHeJ_G0026282.1 mouse_genomes_project 2 140720211 141055884 + Btbd3 protein_coding processed_transcript MGP_C3HHeJ_T0057616.1 MGP_C3HHeJ_G0026282.1 mouse_genomes_project 2 140742462 140748045 + MGP_C3HHeJ_P0057616 Btbd3 protein_coding protein_coding MGP_C3HHeJ_T0001045.1 MGP_C3HHeJ_G0000982.1 mouse_genomes_project 2 37196571 37199934 + TEC TEC MGP_C3HHeJ_T0055422.1 MGP_C3HHeJ_G0025673.1 mouse_genomes_project 2 85654047 85654995 + MGP_C3HHeJ_P0055422 Olfr1022 protein_coding protein_coding MGP_C3HHeJ_T0052542.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20450372 20550642 - MGP_C3HHeJ_P0052542 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052543.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20450372 20550596 - MGP_C3HHeJ_P0052543 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052544.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20450385 20550642 - MGP_C3HHeJ_P0052544 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052545.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20450607 20550523 - MGP_C3HHeJ_P0052545 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052546.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20450663 20550588 - MGP_C3HHeJ_P0052546 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052547.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20450663 20550538 - MGP_C3HHeJ_P0052547 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052548.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20450663 20550505 - MGP_C3HHeJ_P0052548 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052549.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20450668 20550631 - MGP_C3HHeJ_P0052549 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052550.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20450668 20550586 - MGP_C3HHeJ_P0052550 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052551.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20451191 20550541 - MGP_C3HHeJ_P0052551 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052552.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20451532 20550620 - MGP_C3HHeJ_P0052552 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052553.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20452107 20457316 - Abi1 protein_coding retained_intron MGP_C3HHeJ_T0052554.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20452111 20460124 - Abi1 protein_coding retained_intron MGP_C3HHeJ_T0052555.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20456788 20470667 - Abi1 protein_coding retained_intron MGP_C3HHeJ_T0052556.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20460047 20472426 - Abi1 protein_coding retained_intron MGP_C3HHeJ_T0003928.1 MGP_C3HHeJ_G0003500.1 mouse_genomes_project 2 70926032 70938170 - Dlx1as antisense antisense MGP_C3HHeJ_T0003929.1 MGP_C3HHeJ_G0003500.1 mouse_genomes_project 2 70933617 70938178 - Dlx1as antisense antisense MGP_C3HHeJ_T0003930.1 MGP_C3HHeJ_G0003500.1 mouse_genomes_project 2 70938089 70948020 - Dlx1as antisense antisense MGP_C3HHeJ_T0003931.1 MGP_C3HHeJ_G0003500.1 mouse_genomes_project 2 70942999 70948101 - Dlx1as antisense antisense MGP_C3HHeJ_T0053523.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28343293 28351536 + MGP_C3HHeJ_P0053523 Dolpp1 protein_coding protein_coding MGP_C3HHeJ_T0053524.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28343455 28351534 + MGP_C3HHeJ_P0053524 Dolpp1 protein_coding protein_coding MGP_C3HHeJ_T0053525.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28343455 28351534 + MGP_C3HHeJ_P0053525 Dolpp1 protein_coding protein_coding MGP_C3HHeJ_T0053526.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28343467 28348331 + Dolpp1 protein_coding retained_intron MGP_C3HHeJ_T0053527.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28343469 28346939 + Dolpp1 protein_coding retained_intron MGP_C3HHeJ_T0053528.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28343478 28351535 + MGP_C3HHeJ_P0053528 Dolpp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053529.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28343479 28347184 + Dolpp1 protein_coding retained_intron MGP_C3HHeJ_T0053530.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28343484 28350695 + MGP_C3HHeJ_P0053530 Dolpp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053531.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28343493 28348823 + Dolpp1 protein_coding retained_intron MGP_C3HHeJ_T0053532.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28346625 28351534 + Dolpp1 protein_coding processed_transcript MGP_C3HHeJ_T0053533.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28348436 28350995 + Dolpp1 protein_coding processed_transcript MGP_C3HHeJ_T0016258.1 MGP_C3HHeJ_G0014362.1 mouse_genomes_project X 81796287 81796613 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016664.1 MGP_C3HHeJ_G0014768.1 mouse_genomes_project X 160720202 160722483 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097363.1 MGP_C3HHeJ_G0035856.1 mouse_genomes_project X 149964953 149977640 - MGP_C3HHeJ_P0097363 Ribc1 protein_coding protein_coding MGP_C3HHeJ_T0097364.1 MGP_C3HHeJ_G0035856.1 mouse_genomes_project X 149970928 149977615 - Ribc1 protein_coding processed_transcript MGP_C3HHeJ_T0095643.1 MGP_C3HHeJ_G0035377.1 mouse_genomes_project X 45213756 45219470 - MGP_C3HHeJ_P0095643 protein_coding protein_coding MGP_C3HHeJ_T0095644.1 MGP_C3HHeJ_G0035377.1 mouse_genomes_project X 45213756 45229154 - MGP_C3HHeJ_P0095644 protein_coding protein_coding MGP_C3HHeJ_T0095645.1 MGP_C3HHeJ_G0035377.1 mouse_genomes_project X 45213765 45229264 - MGP_C3HHeJ_P0095645 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095646.1 MGP_C3HHeJ_G0035377.1 mouse_genomes_project X 45217568 45226770 - MGP_C3HHeJ_P0095646 protein_coding protein_coding MGP_C3HHeJ_T0095647.1 MGP_C3HHeJ_G0035377.1 mouse_genomes_project X 45224371 45229154 - MGP_C3HHeJ_P0095647 protein_coding protein_coding MGP_C3HHeJ_T0095648.1 MGP_C3HHeJ_G0035377.1 mouse_genomes_project X 45226350 45229140 - protein_coding processed_transcript MGP_C3HHeJ_T0015998.1 MGP_C3HHeJ_G0014102.1 mouse_genomes_project X 7377853 7378198 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016635.1 MGP_C3HHeJ_G0014739.1 mouse_genomes_project X 155612765 155613811 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016575.1 MGP_C3HHeJ_G0014679.1 mouse_genomes_project X 141930790 141933398 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016026.1 MGP_C3HHeJ_G0014130.1 mouse_genomes_project X 14446153 14446649 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102364.1 MGP_C3HHeJ_G0040327.1 mouse_genomes_project X 99669523 99670260 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095933.1 MGP_C3HHeJ_G0035484.1 mouse_genomes_project X 69877987 69882083 + MGP_C3HHeJ_P0095933 Dusp9 protein_coding protein_coding MGP_C3HHeJ_T0097250.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148322193 148369718 - MGP_C3HHeJ_P0097250 Tmem29 protein_coding protein_coding MGP_C3HHeJ_T0097251.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148322193 148390293 - MGP_C3HHeJ_P0097251 Tmem29 protein_coding protein_coding MGP_C3HHeJ_T0097252.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148323215 148390293 - Tmem29 protein_coding processed_transcript MGP_C3HHeJ_T0097253.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148333030 148390297 - Tmem29 protein_coding processed_transcript MGP_C3HHeJ_T0097254.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148333030 148369687 - Tmem29 protein_coding processed_transcript MGP_C3HHeJ_T0097255.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148333036 148369486 - MGP_C3HHeJ_P0097255 Tmem29 protein_coding protein_coding MGP_C3HHeJ_T0097256.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148333372 148390297 - Tmem29 protein_coding processed_transcript MGP_C3HHeJ_T0097257.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148333558 148364103 - Tmem29 protein_coding processed_transcript MGP_C3HHeJ_T0097258.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148333623 148369486 - Tmem29 protein_coding processed_transcript MGP_C3HHeJ_T0097259.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148341414 148390297 - Tmem29 protein_coding retained_intron MGP_C3HHeJ_T0097260.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148365729 148369744 - Tmem29 protein_coding processed_transcript MGP_C3HHeJ_T0097261.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148366534 148369370 - Tmem29 protein_coding processed_transcript MGP_C3HHeJ_T0005520.1 MGP_C3HHeJ_G0004644.1 mouse_genomes_project X 71915288 71917105 + Gm15063 antisense antisense MGP_C3HHeJ_T0096652.1 MGP_C3HHeJ_G0035646.1 mouse_genomes_project X 99061703 99071450 - MGP_C3HHeJ_P0096652 protein_coding protein_coding MGP_C3HHeJ_T0099743.1 MGP_C3HHeJ_G0037937.1 mouse_genomes_project X 8954122 8954213 - Gm25552 snRNA snRNA MGP_C3HHeJ_T0005523.1 MGP_C3HHeJ_G0004647.1 mouse_genomes_project X 90772232 90852811 + Gm14798 antisense antisense MGP_C3HHeJ_T0096345.1 MGP_C3HHeJ_G0035564.1 mouse_genomes_project X 81951395 82015741 + MGP_C3HHeJ_P0096345 protein_coding unknown_likely_coding MGP_C3HHeJ_T0096346.1 MGP_C3HHeJ_G0035564.1 mouse_genomes_project X 81951845 81995059 + MGP_C3HHeJ_P0096346 protein_coding protein_coding MGP_C3HHeJ_T0096347.1 MGP_C3HHeJ_G0035564.1 mouse_genomes_project X 81951850 81954290 + protein_coding processed_transcript MGP_C3HHeJ_T0096348.1 MGP_C3HHeJ_G0035564.1 mouse_genomes_project X 81952814 81994849 + MGP_C3HHeJ_P0096348 protein_coding protein_coding MGP_C3HHeJ_T0096873.1 MGP_C3HHeJ_G0035724.1 mouse_genomes_project X 117430020 118084597 + MGP_C3HHeJ_P0096873 Pcdh11x protein_coding protein_coding MGP_C3HHeJ_T0096874.1 MGP_C3HHeJ_G0035724.1 mouse_genomes_project X 117430020 118084597 + MGP_C3HHeJ_P0096874 Pcdh11x protein_coding protein_coding MGP_C3HHeJ_T0096875.1 MGP_C3HHeJ_G0035724.1 mouse_genomes_project X 117430088 117432219 + Pcdh11x protein_coding retained_intron MGP_C3HHeJ_T0096876.1 MGP_C3HHeJ_G0035724.1 mouse_genomes_project X 117430088 118088874 + MGP_C3HHeJ_P0096876 Pcdh11x protein_coding protein_coding MGP_C3HHeJ_T0096877.1 MGP_C3HHeJ_G0035724.1 mouse_genomes_project X 117430164 118084597 + MGP_C3HHeJ_P0096877 Pcdh11x protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096878.1 MGP_C3HHeJ_G0035724.1 mouse_genomes_project X 117508163 118088862 + MGP_C3HHeJ_P0096878 Pcdh11x protein_coding protein_coding MGP_C3HHeJ_T0096879.1 MGP_C3HHeJ_G0035724.1 mouse_genomes_project X 117508937 117559349 + MGP_C3HHeJ_P0096879 Pcdh11x protein_coding protein_coding MGP_C3HHeJ_T0096880.1 MGP_C3HHeJ_G0035724.1 mouse_genomes_project X 117548727 118084597 + MGP_C3HHeJ_P0096880 Pcdh11x protein_coding protein_coding MGP_C3HHeJ_T0096881.1 MGP_C3HHeJ_G0035724.1 mouse_genomes_project X 117548727 118084595 + MGP_C3HHeJ_P0096881 Pcdh11x protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0016630.1 MGP_C3HHeJ_G0014734.1 mouse_genomes_project X 154163839 154164746 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095576.1 MGP_C3HHeJ_G0035358.1 mouse_genomes_project X 43333239 43393655 + MGP_C3HHeJ_P0095576 Ocrl protein_coding protein_coding MGP_C3HHeJ_T0095577.1 MGP_C3HHeJ_G0035358.1 mouse_genomes_project X 43333290 43382911 + MGP_C3HHeJ_P0095577 Ocrl protein_coding protein_coding MGP_C3HHeJ_T0095578.1 MGP_C3HHeJ_G0035358.1 mouse_genomes_project X 43333307 43382894 + Ocrl protein_coding processed_transcript MGP_C3HHeJ_T0095579.1 MGP_C3HHeJ_G0035358.1 mouse_genomes_project X 43333319 43336456 + Ocrl protein_coding retained_intron MGP_C3HHeJ_T0095580.1 MGP_C3HHeJ_G0035358.1 mouse_genomes_project X 43333842 43393660 + MGP_C3HHeJ_P0095580 Ocrl protein_coding protein_coding MGP_C3HHeJ_T0095581.1 MGP_C3HHeJ_G0035358.1 mouse_genomes_project X 43351316 43352459 + Ocrl protein_coding retained_intron MGP_C3HHeJ_T0095582.1 MGP_C3HHeJ_G0035358.1 mouse_genomes_project X 43364429 43374292 + MGP_C3HHeJ_P0095582 Ocrl protein_coding protein_coding MGP_C3HHeJ_T0097167.1 MGP_C3HHeJ_G0035820.1 mouse_genomes_project X 139321155 139335351 - MGP_C3HHeJ_P0097167 Irs4 protein_coding protein_coding MGP_C3HHeJ_T0011063.1 MGP_C3HHeJ_G0009196.1 mouse_genomes_project X 55607479 55607576 - Gm44500 miRNA miRNA MGP_C3HHeJ_T0016084.1 MGP_C3HHeJ_G0014188.1 mouse_genomes_project X 39688786 39689234 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016617.1 MGP_C3HHeJ_G0014721.1 mouse_genomes_project X 151746860 151747626 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101288.1 MGP_C3HHeJ_G0039387.1 mouse_genomes_project X 2806274 2807094 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0016027.1 MGP_C3HHeJ_G0014131.1 mouse_genomes_project X 14779563 14779960 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096905.1 MGP_C3HHeJ_G0035735.1 mouse_genomes_project X 131136635 131157548 + MGP_C3HHeJ_P0096905 Srpx2 protein_coding protein_coding MGP_C3HHeJ_T0095919.1 MGP_C3HHeJ_G0035481.1 mouse_genomes_project X 69665137 69688197 - MGP_C3HHeJ_P0095919 Haus7 protein_coding protein_coding MGP_C3HHeJ_T0095920.1 MGP_C3HHeJ_G0035481.1 mouse_genomes_project X 69665137 69688197 - MGP_C3HHeJ_P0095920 Haus7 protein_coding protein_coding MGP_C3HHeJ_T0095921.1 MGP_C3HHeJ_G0035481.1 mouse_genomes_project X 69665139 69675954 - Haus7 protein_coding processed_transcript MGP_C3HHeJ_T0016036.1 MGP_C3HHeJ_G0014140.1 mouse_genomes_project X 15960260 15960630 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011094.1 MGP_C3HHeJ_G0009227.1 mouse_genomes_project X 70591426 70591494 + Mir7092 miRNA miRNA MGP_C3HHeJ_T0016555.1 MGP_C3HHeJ_G0014659.1 mouse_genomes_project X 139480590 139481563 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016011.1 MGP_C3HHeJ_G0014115.1 mouse_genomes_project X 9993951 9994828 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016018.1 MGP_C3HHeJ_G0014122.1 mouse_genomes_project X 11600851 11602026 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015988.1 MGP_C3HHeJ_G0014092.1 mouse_genomes_project X 5570141 5570607 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016551.1 MGP_C3HHeJ_G0014655.1 mouse_genomes_project X 139036015 139036231 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097077.1 MGP_C3HHeJ_G0035792.1 mouse_genomes_project X 135052410 136350734 + MGP_C3HHeJ_P0097077 Il1rapl2 protein_coding protein_coding MGP_C3HHeJ_T0097078.1 MGP_C3HHeJ_G0035792.1 mouse_genomes_project X 135052821 135994197 + Il1rapl2 protein_coding retained_intron MGP_C3HHeJ_T0097079.1 MGP_C3HHeJ_G0035792.1 mouse_genomes_project X 135130463 136350412 + MGP_C3HHeJ_P0097079 Il1rapl2 protein_coding protein_coding MGP_C3HHeJ_T0016269.1 MGP_C3HHeJ_G0014373.1 mouse_genomes_project X 84834295 84834637 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016090.1 MGP_C3HHeJ_G0014194.1 mouse_genomes_project X 41197974 41198209 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099752.1 MGP_C3HHeJ_G0037946.1 mouse_genomes_project X 18004937 18005047 + Gm26131 snRNA snRNA MGP_C3HHeJ_T0016574.1 MGP_C3HHeJ_G0014678.1 mouse_genomes_project X 141916618 141916774 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009302.1 MGP_C3HHeJ_G0007460.1 mouse_genomes_project X 63513177 63514194 + 1700036O09Rik lincRNA lincRNA MGP_C3HHeJ_T0096812.1 MGP_C3HHeJ_G0035699.1 mouse_genomes_project X 106499527 106501350 + MGP_C3HHeJ_P0096812 Gm6377 protein_coding protein_coding MGP_C3HHeJ_T0096813.1 MGP_C3HHeJ_G0035699.1 mouse_genomes_project X 106499529 106503211 + MGP_C3HHeJ_P0096813 Gm6377 protein_coding protein_coding MGP_C3HHeJ_T0095158.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2841699 2843933 - Rbm3 protein_coding processed_transcript MGP_C3HHeJ_T0095159.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2841702 2849274 - MGP_C3HHeJ_P0095159 Rbm3 protein_coding protein_coding MGP_C3HHeJ_T0095160.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2843508 2849256 - MGP_C3HHeJ_P0095160 Rbm3 protein_coding protein_coding MGP_C3HHeJ_T0095161.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2845083 2849457 - MGP_C3HHeJ_P0095161 Rbm3 protein_coding protein_coding MGP_C3HHeJ_T0095162.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2845085 2849300 - MGP_C3HHeJ_P0095162 Rbm3 protein_coding protein_coding MGP_C3HHeJ_T0095163.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2845096 2849350 - MGP_C3HHeJ_P0095163 Rbm3 protein_coding protein_coding MGP_C3HHeJ_T0095164.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2845096 2849273 - MGP_C3HHeJ_P0095164 Rbm3 protein_coding protein_coding MGP_C3HHeJ_T0095165.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2845206 2849273 - MGP_C3HHeJ_P0095165 Rbm3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095166.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2846589 2849274 - MGP_C3HHeJ_P0095166 Rbm3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095167.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2846812 2849299 - Rbm3 protein_coding retained_intron MGP_C3HHeJ_T0095168.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2847939 2849336 - Rbm3 protein_coding retained_intron MGP_C3HHeJ_T0097389.1 MGP_C3HHeJ_G0035861.1 mouse_genomes_project X 150322287 150347486 - MGP_C3HHeJ_P0097389 Gpr173 protein_coding protein_coding MGP_C3HHeJ_T0097390.1 MGP_C3HHeJ_G0035861.1 mouse_genomes_project X 150345797 150347486 - Gpr173 protein_coding processed_transcript MGP_C3HHeJ_T0016686.1 MGP_C3HHeJ_G0014790.1 mouse_genomes_project X 165400069 165400516 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096844.1 MGP_C3HHeJ_G0035711.1 mouse_genomes_project X 109779374 109807779 + Zfp711 protein_coding retained_intron MGP_C3HHeJ_T0096845.1 MGP_C3HHeJ_G0035711.1 mouse_genomes_project X 109779374 109817911 + MGP_C3HHeJ_P0096845 Zfp711 protein_coding protein_coding MGP_C3HHeJ_T0096846.1 MGP_C3HHeJ_G0035711.1 mouse_genomes_project X 109780440 109817920 + MGP_C3HHeJ_P0096846 Zfp711 protein_coding unknown_likely_coding MGP_C3HHeJ_T0096847.1 MGP_C3HHeJ_G0035711.1 mouse_genomes_project X 109794137 109814759 + MGP_C3HHeJ_P0096847 Zfp711 protein_coding protein_coding MGP_C3HHeJ_T0016490.1 MGP_C3HHeJ_G0014594.1 mouse_genomes_project X 128181358 128182752 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095863.1 MGP_C3HHeJ_G0035456.1 mouse_genomes_project X 67588265 67661346 - MGP_C3HHeJ_P0095863 Cd99l2 protein_coding protein_coding MGP_C3HHeJ_T0095864.1 MGP_C3HHeJ_G0035456.1 mouse_genomes_project X 67588265 67661142 - MGP_C3HHeJ_P0095864 Cd99l2 protein_coding protein_coding MGP_C3HHeJ_T0095865.1 MGP_C3HHeJ_G0035456.1 mouse_genomes_project X 67588265 67661346 - MGP_C3HHeJ_P0095865 Cd99l2 protein_coding protein_coding MGP_C3HHeJ_T0095866.1 MGP_C3HHeJ_G0035456.1 mouse_genomes_project X 67590827 67661346 - MGP_C3HHeJ_P0095866 Cd99l2 protein_coding protein_coding MGP_C3HHeJ_T0095867.1 MGP_C3HHeJ_G0035456.1 mouse_genomes_project X 67607530 67661146 - Cd99l2 protein_coding retained_intron MGP_C3HHeJ_T0095868.1 MGP_C3HHeJ_G0035456.1 mouse_genomes_project X 67660395 67661102 - Cd99l2 protein_coding processed_transcript MGP_C3HHeJ_T0016601.1 MGP_C3HHeJ_G0014705.1 mouse_genomes_project X 148631964 148632559 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016339.1 MGP_C3HHeJ_G0014443.1 mouse_genomes_project X 96573716 96574010 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016609.1 MGP_C3HHeJ_G0014713.1 mouse_genomes_project X 149717827 149718543 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096995.1 MGP_C3HHeJ_G0035761.1 mouse_genomes_project X 132803806 132814927 + MGP_C3HHeJ_P0096995 protein_coding protein_coding MGP_C3HHeJ_T0096676.1 MGP_C3HHeJ_G0035653.1 mouse_genomes_project X 99701025 99704928 + MGP_C3HHeJ_P0096676 protein_coding protein_coding MGP_C3HHeJ_T0096677.1 MGP_C3HHeJ_G0035653.1 mouse_genomes_project X 99701025 99704928 + MGP_C3HHeJ_P0096677 protein_coding protein_coding MGP_C3HHeJ_T0095671.1 MGP_C3HHeJ_G0035386.1 mouse_genomes_project X 47202522 47251136 - MGP_C3HHeJ_P0095671 Usp26 protein_coding protein_coding MGP_C3HHeJ_T0095672.1 MGP_C3HHeJ_G0035386.1 mouse_genomes_project X 47202522 47251047 - MGP_C3HHeJ_P0095672 Usp26 protein_coding protein_coding MGP_C3HHeJ_T0099791.1 MGP_C3HHeJ_G0037985.1 mouse_genomes_project X 107921634 107921825 - Gm26108 snRNA snRNA MGP_C3HHeJ_T0101064.1 MGP_C3HHeJ_G0039258.1 mouse_genomes_project X 154686782 154686879 - Gm23404 snoRNA snoRNA MGP_C3HHeJ_T0096703.1 MGP_C3HHeJ_G0035667.1 mouse_genomes_project X 101432158 101580212 - MGP_C3HHeJ_P0096703 Abcb7 protein_coding protein_coding MGP_C3HHeJ_T0096704.1 MGP_C3HHeJ_G0035667.1 mouse_genomes_project X 101493686 101580222 - Abcb7 protein_coding retained_intron MGP_C3HHeJ_T0016307.1 MGP_C3HHeJ_G0014411.1 mouse_genomes_project X 91086835 91087783 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096866.1 MGP_C3HHeJ_G0035718.1 mouse_genomes_project X 113618059 113657925 + MGP_C3HHeJ_P0096866 Cpxcr1 protein_coding protein_coding MGP_C3HHeJ_T0005517.1 MGP_C3HHeJ_G0004641.1 mouse_genomes_project X 67607908 67638448 + Gm16189 antisense antisense MGP_C3HHeJ_T0102363.1 MGP_C3HHeJ_G0040326.1 mouse_genomes_project X 92497002 92497537 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095590.1 MGP_C3HHeJ_G0035362.1 mouse_genomes_project X 43607628 43644390 - MGP_C3HHeJ_P0095590 Zdhhc9 protein_coding protein_coding MGP_C3HHeJ_T0095591.1 MGP_C3HHeJ_G0035362.1 mouse_genomes_project X 43607628 43644199 - MGP_C3HHeJ_P0095591 Zdhhc9 protein_coding protein_coding MGP_C3HHeJ_T0095592.1 MGP_C3HHeJ_G0035362.1 mouse_genomes_project X 43616587 43644177 - Zdhhc9 protein_coding retained_intron MGP_C3HHeJ_T0095593.1 MGP_C3HHeJ_G0035362.1 mouse_genomes_project X 43625553 43644114 - Zdhhc9 protein_coding retained_intron MGP_C3HHeJ_T0095594.1 MGP_C3HHeJ_G0035362.1 mouse_genomes_project X 43637233 43643840 - Zdhhc9 protein_coding processed_transcript MGP_C3HHeJ_T0095595.1 MGP_C3HHeJ_G0035362.1 mouse_genomes_project X 43642179 43644170 - Zdhhc9 protein_coding processed_transcript MGP_C3HHeJ_T0096697.1 MGP_C3HHeJ_G0035665.1 mouse_genomes_project X 101101317 101129468 - MGP_C3HHeJ_P0096697 Rlim protein_coding protein_coding MGP_C3HHeJ_T0096698.1 MGP_C3HHeJ_G0035665.1 mouse_genomes_project X 101101317 101129468 - MGP_C3HHeJ_P0096698 Rlim protein_coding protein_coding MGP_C3HHeJ_T0096699.1 MGP_C3HHeJ_G0035665.1 mouse_genomes_project X 101125978 101129468 - Rlim protein_coding retained_intron MGP_C3HHeJ_T0016589.1 MGP_C3HHeJ_G0014693.1 mouse_genomes_project X 143773419 143773786 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015991.1 MGP_C3HHeJ_G0014095.1 mouse_genomes_project X 6106120 6106749 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016532.1 MGP_C3HHeJ_G0014636.1 mouse_genomes_project X 134716956 134719057 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016452.1 MGP_C3HHeJ_G0014556.1 mouse_genomes_project X 114851154 114853133 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096885.1 MGP_C3HHeJ_G0035728.1 mouse_genomes_project X 124498005 124499611 + MGP_C3HHeJ_P0096885 4921511C20Rik protein_coding protein_coding MGP_C3HHeJ_T0016302.1 MGP_C3HHeJ_G0014406.1 mouse_genomes_project X 90661595 90663119 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095687.1 MGP_C3HHeJ_G0035394.1 mouse_genomes_project X 48743625 48769967 - MGP_C3HHeJ_P0095687 Fam122b protein_coding protein_coding MGP_C3HHeJ_T0095688.1 MGP_C3HHeJ_G0035394.1 mouse_genomes_project X 48743635 48769181 - MGP_C3HHeJ_P0095688 Fam122b protein_coding protein_coding MGP_C3HHeJ_T0095689.1 MGP_C3HHeJ_G0035394.1 mouse_genomes_project X 48743956 48769960 - MGP_C3HHeJ_P0095689 Fam122b protein_coding protein_coding MGP_C3HHeJ_T0095690.1 MGP_C3HHeJ_G0035394.1 mouse_genomes_project X 48745072 48769967 - Fam122b protein_coding processed_transcript MGP_C3HHeJ_T0097607.1 MGP_C3HHeJ_G0035924.1 mouse_genomes_project X 162697585 162798466 + MGP_C3HHeJ_P0097607 Pir protein_coding protein_coding MGP_C3HHeJ_T0097608.1 MGP_C3HHeJ_G0035924.1 mouse_genomes_project X 162697645 162802354 + MGP_C3HHeJ_P0097608 Pir protein_coding protein_coding MGP_C3HHeJ_T0097609.1 MGP_C3HHeJ_G0035924.1 mouse_genomes_project X 162697725 162701339 + Pir protein_coding retained_intron MGP_C3HHeJ_T0097610.1 MGP_C3HHeJ_G0035924.1 mouse_genomes_project X 162697761 162779121 + Pir protein_coding retained_intron MGP_C3HHeJ_T0097611.1 MGP_C3HHeJ_G0035924.1 mouse_genomes_project X 162697787 162740490 + Pir protein_coding processed_transcript MGP_C3HHeJ_T0102350.1 MGP_C3HHeJ_G0040313.1 mouse_genomes_project X 71809711 71831514 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009293.1 MGP_C3HHeJ_G0007455.1 mouse_genomes_project X 44768314 44800737 - Gm14696 lincRNA lincRNA MGP_C3HHeJ_T0097678.1 MGP_C3HHeJ_G0035943.1 mouse_genomes_project X 165827017 165864022 - MGP_C3HHeJ_P0097678 Prps2 protein_coding protein_coding MGP_C3HHeJ_T0097679.1 MGP_C3HHeJ_G0035943.1 mouse_genomes_project X 165853695 165863983 - Prps2 protein_coding processed_transcript MGP_C3HHeJ_T0011073.1 MGP_C3HHeJ_G0009206.1 mouse_genomes_project X 62862238 62862313 - Mir463 miRNA miRNA MGP_C3HHeJ_T0095425.1 MGP_C3HHeJ_G0035308.1 mouse_genomes_project X 31656218 31661641 - Gm14569 protein_coding processed_transcript MGP_C3HHeJ_T0095426.1 MGP_C3HHeJ_G0035308.1 mouse_genomes_project X 31656218 31659298 - Gm14569 protein_coding processed_transcript MGP_C3HHeJ_T0095427.1 MGP_C3HHeJ_G0035308.1 mouse_genomes_project X 31656218 31714233 - MGP_C3HHeJ_P0095427 Gm14569 protein_coding protein_coding MGP_C3HHeJ_T0095428.1 MGP_C3HHeJ_G0035308.1 mouse_genomes_project X 31670784 31704520 - Gm14569 protein_coding processed_transcript MGP_C3HHeJ_T0016317.1 MGP_C3HHeJ_G0014421.1 mouse_genomes_project X 91581556 91582972 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097585.1 MGP_C3HHeJ_G0035917.1 mouse_genomes_project X 162363133 162386232 - MGP_C3HHeJ_P0097585 Zrsr2 protein_coding protein_coding MGP_C3HHeJ_T0097586.1 MGP_C3HHeJ_G0035917.1 mouse_genomes_project X 162366707 162377859 - Zrsr2 protein_coding retained_intron MGP_C3HHeJ_T0097587.1 MGP_C3HHeJ_G0035917.1 mouse_genomes_project X 162367610 162371119 - Zrsr2 protein_coding retained_intron MGP_C3HHeJ_T0097588.1 MGP_C3HHeJ_G0035917.1 mouse_genomes_project X 162376581 162378101 - Zrsr2 protein_coding retained_intron MGP_C3HHeJ_T0097589.1 MGP_C3HHeJ_G0035917.1 mouse_genomes_project X 162378028 162386241 - MGP_C3HHeJ_P0097589 Zrsr2 protein_coding protein_coding MGP_C3HHeJ_T0097590.1 MGP_C3HHeJ_G0035917.1 mouse_genomes_project X 162381233 162385805 - Zrsr2 protein_coding processed_transcript MGP_C3HHeJ_T0097591.1 MGP_C3HHeJ_G0035917.1 mouse_genomes_project X 162381282 162386195 - MGP_C3HHeJ_P0097591 Zrsr2 protein_coding protein_coding MGP_C3HHeJ_T0097592.1 MGP_C3HHeJ_G0035917.1 mouse_genomes_project X 162384114 162386304 - MGP_C3HHeJ_P0097592 Zrsr2 protein_coding protein_coding MGP_C3HHeJ_T0101020.1 MGP_C3HHeJ_G0039214.1 mouse_genomes_project X 38051034 38051164 - Gm23705 snoRNA snoRNA MGP_C3HHeJ_T0102348.1 MGP_C3HHeJ_G0040311.1 mouse_genomes_project X 71061129 71061996 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016577.1 MGP_C3HHeJ_G0014681.1 mouse_genomes_project X 142155647 142157013 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011688.1 MGP_C3HHeJ_G0009821.1 mouse_genomes_project X 160668934 160669208 - Gm23867 misc_RNA misc_RNA MGP_C3HHeJ_T0101033.1 MGP_C3HHeJ_G0039227.1 mouse_genomes_project X 73187057 73187196 + Gm23280 snoRNA snoRNA MGP_C3HHeJ_T0095148.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2825811 2835523 - MGP_C3HHeJ_P0095148 Wdr13 protein_coding protein_coding MGP_C3HHeJ_T0095149.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2825813 2835573 - MGP_C3HHeJ_P0095149 Wdr13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095150.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2825834 2835485 - MGP_C3HHeJ_P0095150 Wdr13 protein_coding protein_coding MGP_C3HHeJ_T0095151.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2827814 2835538 - MGP_C3HHeJ_P0095151 Wdr13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095152.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2827918 2835535 - MGP_C3HHeJ_P0095152 Wdr13 protein_coding protein_coding MGP_C3HHeJ_T0095153.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2828211 2831028 - Wdr13 protein_coding retained_intron MGP_C3HHeJ_T0095154.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2830544 2835534 - Wdr13 protein_coding processed_transcript MGP_C3HHeJ_T0095155.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2831651 2835560 - MGP_C3HHeJ_P0095155 Wdr13 protein_coding protein_coding MGP_C3HHeJ_T0095156.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2832228 2835194 - Wdr13 protein_coding retained_intron MGP_C3HHeJ_T0095157.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2834799 2835607 - Wdr13 protein_coding processed_transcript MGP_C3HHeJ_T0011042.1 MGP_C3HHeJ_G0009175.1 mouse_genomes_project X 37036406 37036491 + Gm22413 miRNA miRNA MGP_C3HHeJ_T0015960.1 MGP_C3HHeJ_G0014064.1 mouse_genomes_project X 209036 210885 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011126.1 MGP_C3HHeJ_G0009259.1 mouse_genomes_project X 144726601 144726688 + Mir1912 miRNA miRNA MGP_C3HHeJ_T0096840.1 MGP_C3HHeJ_G0035709.1 mouse_genomes_project X 109572574 109592115 - MGP_C3HHeJ_P0096840 Satl1 protein_coding protein_coding MGP_C3HHeJ_T0096841.1 MGP_C3HHeJ_G0035709.1 mouse_genomes_project X 109572576 109593072 - MGP_C3HHeJ_P0096841 Satl1 protein_coding protein_coding MGP_C3HHeJ_T0016193.1 MGP_C3HHeJ_G0014297.1 mouse_genomes_project X 66660228 66660721 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016646.1 MGP_C3HHeJ_G0014750.1 mouse_genomes_project X 156538323 156544373 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016492.1 MGP_C3HHeJ_G0014596.1 mouse_genomes_project X 128739878 128740908 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097047.1 MGP_C3HHeJ_G0035783.1 mouse_genomes_project X 134207172 134227678 - MGP_C3HHeJ_P0097047 Glra4 protein_coding protein_coding MGP_C3HHeJ_T0097048.1 MGP_C3HHeJ_G0035783.1 mouse_genomes_project X 134216508 134227678 - Glra4 protein_coding retained_intron MGP_C3HHeJ_T0096508.1 MGP_C3HHeJ_G0035614.1 mouse_genomes_project X 96702132 96737318 + MGP_C3HHeJ_P0096508 Tmem28 protein_coding protein_coding MGP_C3HHeJ_T0011134.1 MGP_C3HHeJ_G0009267.1 mouse_genomes_project X 149877741 149877849 + Mir98 miRNA miRNA MGP_C3HHeJ_T0095318.1 MGP_C3HHeJ_G0035277.1 mouse_genomes_project X 15442619 15480921 + MGP_C3HHeJ_P0095318 Rp2 protein_coding protein_coding MGP_C3HHeJ_T0095319.1 MGP_C3HHeJ_G0035277.1 mouse_genomes_project X 15442619 15480917 + MGP_C3HHeJ_P0095319 Rp2 protein_coding protein_coding MGP_C3HHeJ_T0095320.1 MGP_C3HHeJ_G0035277.1 mouse_genomes_project X 15442697 15480917 + MGP_C3HHeJ_P0095320 Rp2 protein_coding protein_coding MGP_C3HHeJ_T0095321.1 MGP_C3HHeJ_G0035277.1 mouse_genomes_project X 15442713 15486219 + MGP_C3HHeJ_P0095321 Rp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095322.1 MGP_C3HHeJ_G0035277.1 mouse_genomes_project X 15442757 15486196 + MGP_C3HHeJ_P0095322 Rp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0009365.1 MGP_C3HHeJ_G0007500.1 mouse_genomes_project X 165634388 165642331 + Gm15228 lincRNA lincRNA MGP_C3HHeJ_T0005532.1 MGP_C3HHeJ_G0004654.1 mouse_genomes_project X 139334925 139336251 + Gm15295 antisense antisense MGP_C3HHeJ_T0016033.1 MGP_C3HHeJ_G0014137.1 mouse_genomes_project X 15470020 15470813 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011041.1 MGP_C3HHeJ_G0009174.1 mouse_genomes_project X 35358425 35358496 - Gm26194 miRNA miRNA MGP_C3HHeJ_T0099756.1 MGP_C3HHeJ_G0037950.1 mouse_genomes_project X 34647639 34647744 - Gm26437 snRNA snRNA MGP_C3HHeJ_T0016118.1 MGP_C3HHeJ_G0014222.1 mouse_genomes_project X 48814838 48815472 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011678.1 MGP_C3HHeJ_G0009811.1 mouse_genomes_project X 126432955 126433233 - Gm22225 misc_RNA misc_RNA MGP_C3HHeJ_T0016651.1 MGP_C3HHeJ_G0014755.1 mouse_genomes_project X 157383950 157386527 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011088.1 MGP_C3HHeJ_G0009221.1 mouse_genomes_project X 68779766 68779873 - Mir767 miRNA miRNA MGP_C3HHeJ_T0015994.1 MGP_C3HHeJ_G0014098.1 mouse_genomes_project X 6773809 6774250 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018370.1 MGP_C3HHeJ_G0015526.1 mouse_genomes_project X 2056013 2065282 - 2010204K13Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018371.1 MGP_C3HHeJ_G0015526.1 mouse_genomes_project X 2056283 2057022 - 2010204K13Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018372.1 MGP_C3HHeJ_G0015526.1 mouse_genomes_project X 2056299 2067185 - 2010204K13Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018373.1 MGP_C3HHeJ_G0015526.1 mouse_genomes_project X 2056302 2090923 - 2010204K13Rik processed_transcript processed_transcript MGP_C3HHeJ_T0095421.1 MGP_C3HHeJ_G0035306.1 mouse_genomes_project X 31560757 31575016 + Lonrf3 protein_coding retained_intron MGP_C3HHeJ_T0095422.1 MGP_C3HHeJ_G0035306.1 mouse_genomes_project X 31560757 31594729 + MGP_C3HHeJ_P0095422 Lonrf3 protein_coding protein_coding MGP_C3HHeJ_T0095423.1 MGP_C3HHeJ_G0035306.1 mouse_genomes_project X 31561620 31574159 + MGP_C3HHeJ_P0095423 Lonrf3 protein_coding protein_coding MGP_C3HHeJ_T0095393.1 MGP_C3HHeJ_G0035295.1 mouse_genomes_project X 16298018 16299233 - MGP_C3HHeJ_P0095393 Gm21876 protein_coding protein_coding MGP_C3HHeJ_T0096960.1 MGP_C3HHeJ_G0035750.1 mouse_genomes_project X 131962276 131972514 + MGP_C3HHeJ_P0096960 Armcx4 protein_coding protein_coding MGP_C3HHeJ_T0016326.1 MGP_C3HHeJ_G0014430.1 mouse_genomes_project X 93091888 93093308 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102340.1 MGP_C3HHeJ_G0040303.1 mouse_genomes_project X 33210202 33214989 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0097276.1 MGP_C3HHeJ_G0035845.1 mouse_genomes_project X 148514336 148546009 + MGP_C3HHeJ_P0097276 Pfkfb1 protein_coding protein_coding MGP_C3HHeJ_T0097277.1 MGP_C3HHeJ_G0035845.1 mouse_genomes_project X 148514363 148538633 + Pfkfb1 protein_coding processed_transcript MGP_C3HHeJ_T0097278.1 MGP_C3HHeJ_G0035845.1 mouse_genomes_project X 148516028 148566205 + MGP_C3HHeJ_P0097278 Pfkfb1 protein_coding protein_coding MGP_C3HHeJ_T0097279.1 MGP_C3HHeJ_G0035845.1 mouse_genomes_project X 148520585 148566205 + MGP_C3HHeJ_P0097279 Pfkfb1 protein_coding protein_coding MGP_C3HHeJ_T0097280.1 MGP_C3HHeJ_G0035845.1 mouse_genomes_project X 148520717 148566184 + Pfkfb1 protein_coding retained_intron MGP_C3HHeJ_T0097281.1 MGP_C3HHeJ_G0035845.1 mouse_genomes_project X 148539634 148545532 + Pfkfb1 protein_coding processed_transcript MGP_C3HHeJ_T0097282.1 MGP_C3HHeJ_G0035845.1 mouse_genomes_project X 148546166 148564304 + Pfkfb1 protein_coding processed_transcript MGP_C3HHeJ_T0102335.1 MGP_C3HHeJ_G0040298.1 mouse_genomes_project X 8115427 8115565 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005530.1 MGP_C3HHeJ_G0004652.1 mouse_genomes_project X 100487962 100489175 - Gm26952 antisense antisense MGP_C3HHeJ_T0101072.1 MGP_C3HHeJ_G0039266.1 mouse_genomes_project X 168237527 168237646 - Gm25651 snoRNA snoRNA MGP_C3HHeJ_T0016466.1 MGP_C3HHeJ_G0014570.1 mouse_genomes_project X 117594343 117594995 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095222.1 MGP_C3HHeJ_G0035248.1 mouse_genomes_project X 4898156 4985366 - MGP_C3HHeJ_P0095222 Srpx protein_coding protein_coding MGP_C3HHeJ_T0095223.1 MGP_C3HHeJ_G0035248.1 mouse_genomes_project X 4898734 4985393 - MGP_C3HHeJ_P0095223 Srpx protein_coding protein_coding MGP_C3HHeJ_T0095224.1 MGP_C3HHeJ_G0035248.1 mouse_genomes_project X 4899085 4985289 - MGP_C3HHeJ_P0095224 Srpx protein_coding protein_coding MGP_C3HHeJ_T0095225.1 MGP_C3HHeJ_G0035248.1 mouse_genomes_project X 4931542 4985360 - Srpx protein_coding processed_transcript MGP_C3HHeJ_T0005527.1 MGP_C3HHeJ_G0004650.1 mouse_genomes_project X 96332127 96333856 + Gm14808 antisense antisense MGP_C3HHeJ_T0096365.1 MGP_C3HHeJ_G0035571.1 mouse_genomes_project X 85866808 85873348 - MGP_C3HHeJ_P0096365 Pet2 protein_coding protein_coding MGP_C3HHeJ_T0096366.1 MGP_C3HHeJ_G0035571.1 mouse_genomes_project X 85866808 85873348 - MGP_C3HHeJ_P0096366 Pet2 protein_coding protein_coding MGP_C3HHeJ_T0095453.1 MGP_C3HHeJ_G0035318.1 mouse_genomes_project X 32338556 32341439 - MGP_C3HHeJ_P0095453 Rpl39 protein_coding protein_coding MGP_C3HHeJ_T0095454.1 MGP_C3HHeJ_G0035318.1 mouse_genomes_project X 32339679 32341203 - Rpl39 protein_coding retained_intron MGP_C3HHeJ_T0095455.1 MGP_C3HHeJ_G0035318.1 mouse_genomes_project X 32340573 32341193 - Rpl39 protein_coding retained_intron MGP_C3HHeJ_T0016201.1 MGP_C3HHeJ_G0014305.1 mouse_genomes_project X 69522944 69527175 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016394.1 MGP_C3HHeJ_G0014498.1 mouse_genomes_project X 103892495 103893368 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098217.1 MGP_C3HHeJ_G0036429.1 mouse_genomes_project X 5388455 5388564 + Gm25885 rRNA rRNA MGP_C3HHeJ_T0096705.1 MGP_C3HHeJ_G0035668.1 mouse_genomes_project X 101656018 101683240 + MGP_C3HHeJ_P0096705 Uprt protein_coding protein_coding MGP_C3HHeJ_T0016453.1 MGP_C3HHeJ_G0014557.1 mouse_genomes_project X 115014618 115016703 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097139.1 MGP_C3HHeJ_G0035811.1 mouse_genomes_project X 138014917 138024389 + Prps1 protein_coding processed_transcript MGP_C3HHeJ_T0097140.1 MGP_C3HHeJ_G0035811.1 mouse_genomes_project X 138014917 138035061 + MGP_C3HHeJ_P0097140 Prps1 protein_coding protein_coding MGP_C3HHeJ_T0016272.1 MGP_C3HHeJ_G0014376.1 mouse_genomes_project X 85062331 85062802 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096306.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74750766 74899851 - MGP_C3HHeJ_P0096306 Prrg1 protein_coding protein_coding MGP_C3HHeJ_T0096307.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74750766 74899960 - MGP_C3HHeJ_P0096307 Prrg1 protein_coding protein_coding MGP_C3HHeJ_T0096308.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74750766 74899965 - MGP_C3HHeJ_P0096308 Prrg1 protein_coding protein_coding MGP_C3HHeJ_T0096309.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74771627 74899924 - Prrg1 protein_coding processed_transcript MGP_C3HHeJ_T0096310.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74783657 74899851 - Prrg1 protein_coding retained_intron MGP_C3HHeJ_T0096311.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74783674 74899965 - Prrg1 protein_coding retained_intron MGP_C3HHeJ_T0096312.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74786750 74899963 - MGP_C3HHeJ_P0096312 Prrg1 protein_coding protein_coding MGP_C3HHeJ_T0096313.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74827838 74899960 - Prrg1 protein_coding retained_intron MGP_C3HHeJ_T0096314.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74830844 74899959 - Prrg1 protein_coding retained_intron MGP_C3HHeJ_T0096315.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74831310 74899921 - Prrg1 protein_coding processed_transcript MGP_C3HHeJ_T0016218.1 MGP_C3HHeJ_G0014322.1 mouse_genomes_project X 72267052 72268364 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011132.1 MGP_C3HHeJ_G0009265.1 mouse_genomes_project X 149824244 149824320 + Mir3113 miRNA miRNA MGP_C3HHeJ_T0016628.1 MGP_C3HHeJ_G0014732.1 mouse_genomes_project X 153522333 153523884 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099740.1 MGP_C3HHeJ_G0037934.1 mouse_genomes_project X 2775570 2775672 + Gm22083 snRNA snRNA MGP_C3HHeJ_T0016429.1 MGP_C3HHeJ_G0014533.1 mouse_genomes_project X 110223378 110225085 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009336.1 MGP_C3HHeJ_G0007480.1 mouse_genomes_project X 112075250 112076859 + 4930555B12Rik lincRNA lincRNA MGP_C3HHeJ_T0016510.1 MGP_C3HHeJ_G0014614.1 mouse_genomes_project X 132926565 132927308 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018440.1 MGP_C3HHeJ_G0015548.1 mouse_genomes_project X 131960319 131962220 - B230119M05Rik processed_transcript processed_transcript MGP_C3HHeJ_T0096301.1 MGP_C3HHeJ_G0035552.1 mouse_genomes_project X 74378742 74459328 + MGP_C3HHeJ_P0096301 Gm5938 protein_coding protein_coding MGP_C3HHeJ_T0096302.1 MGP_C3HHeJ_G0035552.1 mouse_genomes_project X 74380135 74458395 + Gm5938 protein_coding retained_intron MGP_C3HHeJ_T0016579.1 MGP_C3HHeJ_G0014683.1 mouse_genomes_project X 142228030 142229157 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099812.1 MGP_C3HHeJ_G0038006.1 mouse_genomes_project X 161240717 161240824 - Gm23901 snRNA snRNA MGP_C3HHeJ_T0016670.1 MGP_C3HHeJ_G0014774.1 mouse_genomes_project X 161236421 161236863 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018415.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102240674 102275772 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018416.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102242285 102275722 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018417.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102242294 102275718 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018418.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102244333 102275800 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018419.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102244880 102275800 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018420.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102246138 102275763 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018421.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102246750 102275719 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018422.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102247282 102275731 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018423.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102247480 102275711 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018424.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102247555 102275784 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018425.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102268521 102275780 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018426.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102273540 102275770 - 5530601H04Rik processed_transcript retained_intron MGP_C3HHeJ_T0018427.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102274787 102284660 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018428.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102280282 102281048 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018429.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102280502 102284857 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018430.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102282515 102284684 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0097130.1 MGP_C3HHeJ_G0035808.1 mouse_genomes_project X 137555445 137611647 - MGP_C3HHeJ_P0097130 Nup62cl protein_coding protein_coding MGP_C3HHeJ_T0097131.1 MGP_C3HHeJ_G0035808.1 mouse_genomes_project X 137571382 137611372 - MGP_C3HHeJ_P0097131 Nup62cl protein_coding protein_coding MGP_C3HHeJ_T0097132.1 MGP_C3HHeJ_G0035808.1 mouse_genomes_project X 137576929 137611791 - MGP_C3HHeJ_P0097132 Nup62cl protein_coding protein_coding MGP_C3HHeJ_T0097133.1 MGP_C3HHeJ_G0035808.1 mouse_genomes_project X 137577529 137611659 - MGP_C3HHeJ_P0097133 Nup62cl protein_coding protein_coding MGP_C3HHeJ_T0097134.1 MGP_C3HHeJ_G0035808.1 mouse_genomes_project X 137584110 137611630 - MGP_C3HHeJ_P0097134 Nup62cl protein_coding protein_coding MGP_C3HHeJ_T0096503.1 MGP_C3HHeJ_G0035613.1 mouse_genomes_project X 96338836 96344337 - MGP_C3HHeJ_P0096503 Pja1 protein_coding protein_coding MGP_C3HHeJ_T0096504.1 MGP_C3HHeJ_G0035613.1 mouse_genomes_project X 96338840 96343776 - MGP_C3HHeJ_P0096504 Pja1 protein_coding protein_coding MGP_C3HHeJ_T0096505.1 MGP_C3HHeJ_G0035613.1 mouse_genomes_project X 96338870 96343824 - MGP_C3HHeJ_P0096505 Pja1 protein_coding protein_coding MGP_C3HHeJ_T0096506.1 MGP_C3HHeJ_G0035613.1 mouse_genomes_project X 96339217 96343781 - MGP_C3HHeJ_P0096506 Pja1 protein_coding protein_coding MGP_C3HHeJ_T0096507.1 MGP_C3HHeJ_G0035613.1 mouse_genomes_project X 96339249 96343761 - MGP_C3HHeJ_P0096507 Pja1 protein_coding protein_coding MGP_C3HHeJ_T0097407.1 MGP_C3HHeJ_G0035869.1 mouse_genomes_project X 151300210 151450233 + MGP_C3HHeJ_P0097407 Klf8 protein_coding protein_coding MGP_C3HHeJ_T0097408.1 MGP_C3HHeJ_G0035869.1 mouse_genomes_project X 151300492 151476351 + MGP_C3HHeJ_P0097408 Klf8 protein_coding protein_coding MGP_C3HHeJ_T0097409.1 MGP_C3HHeJ_G0035869.1 mouse_genomes_project X 151437312 151476016 + MGP_C3HHeJ_P0097409 Klf8 protein_coding protein_coding MGP_C3HHeJ_T0016142.1 MGP_C3HHeJ_G0014246.1 mouse_genomes_project X 55959432 55960028 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009294.1 MGP_C3HHeJ_G0007456.1 mouse_genomes_project X 48545606 48547028 - Gm28730 lincRNA lincRNA MGP_C3HHeJ_T0009295.1 MGP_C3HHeJ_G0007456.1 mouse_genomes_project X 48545614 48547012 - Gm28730 lincRNA lincRNA MGP_C3HHeJ_T0009296.1 MGP_C3HHeJ_G0007456.1 mouse_genomes_project X 48545719 48547572 - Gm28730 lincRNA lincRNA MGP_C3HHeJ_T0096692.1 MGP_C3HHeJ_G0035662.1 mouse_genomes_project X 100529648 100590670 + MGP_C3HHeJ_P0096692 Gm26992 protein_coding protein_coding MGP_C3HHeJ_T0011056.1 MGP_C3HHeJ_G0009189.1 mouse_genomes_project X 48542715 48542784 - Mir450-2 miRNA miRNA MGP_C3HHeJ_T0016096.1 MGP_C3HHeJ_G0014200.1 mouse_genomes_project X 43005855 43008325 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011691.1 MGP_C3HHeJ_G0009824.1 mouse_genomes_project X 161470521 161470777 - Gm23501 misc_RNA misc_RNA MGP_C3HHeJ_T0016481.1 MGP_C3HHeJ_G0014585.1 mouse_genomes_project X 125197015 125199800 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097243.1 MGP_C3HHeJ_G0035841.1 mouse_genomes_project X 145200399 145435381 - MGP_C3HHeJ_P0097243 protein_coding unknown_likely_coding MGP_C3HHeJ_T0097244.1 MGP_C3HHeJ_G0035841.1 mouse_genomes_project X 145200401 145242735 - MGP_C3HHeJ_P0097244 protein_coding protein_coding MGP_C3HHeJ_T0097245.1 MGP_C3HHeJ_G0035841.1 mouse_genomes_project X 145200406 145285321 - MGP_C3HHeJ_P0097245 protein_coding protein_coding MGP_C3HHeJ_T0097246.1 MGP_C3HHeJ_G0035841.1 mouse_genomes_project X 145200413 145227773 - protein_coding retained_intron MGP_C3HHeJ_T0097247.1 MGP_C3HHeJ_G0035841.1 mouse_genomes_project X 145200413 145285290 - MGP_C3HHeJ_P0097247 protein_coding protein_coding MGP_C3HHeJ_T0097248.1 MGP_C3HHeJ_G0035841.1 mouse_genomes_project X 145202839 145249636 - MGP_C3HHeJ_P0097248 protein_coding protein_coding MGP_C3HHeJ_T0097249.1 MGP_C3HHeJ_G0035841.1 mouse_genomes_project X 145214287 145233078 - protein_coding processed_transcript MGP_C3HHeJ_T0016104.1 MGP_C3HHeJ_G0014208.1 mouse_genomes_project X 45793747 45794627 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096745.1 MGP_C3HHeJ_G0035677.1 mouse_genomes_project X 103236010 103242704 + MGP_C3HHeJ_P0096745 Cox7b protein_coding protein_coding MGP_C3HHeJ_T0096746.1 MGP_C3HHeJ_G0035677.1 mouse_genomes_project X 103236026 103236440 + Cox7b protein_coding processed_transcript MGP_C3HHeJ_T0096747.1 MGP_C3HHeJ_G0035677.1 mouse_genomes_project X 103239644 103242212 + Cox7b protein_coding retained_intron MGP_C3HHeJ_T0016145.1 MGP_C3HHeJ_G0014249.1 mouse_genomes_project X 56538673 56539115 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016196.1 MGP_C3HHeJ_G0014300.1 mouse_genomes_project X 66881894 66882499 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009299.1 MGP_C3HHeJ_G0007458.1 mouse_genomes_project X 56979989 57020559 + Gm14664 lincRNA lincRNA MGP_C3HHeJ_T0011027.1 MGP_C3HHeJ_G0009160.1 mouse_genomes_project X 1882308 1882376 - Mir188 miRNA miRNA MGP_C3HHeJ_T0016436.1 MGP_C3HHeJ_G0014540.1 mouse_genomes_project X 111923811 111924249 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011104.1 MGP_C3HHeJ_G0009237.1 mouse_genomes_project X 100690631 100690707 - Mir421 miRNA miRNA MGP_C3HHeJ_T0005539.1 MGP_C3HHeJ_G0004657.1 mouse_genomes_project X 153858748 153859321 + Gm15156 antisense antisense MGP_C3HHeJ_T0099771.1 MGP_C3HHeJ_G0037965.1 mouse_genomes_project X 68800827 68800934 + Gm23461 snRNA snRNA MGP_C3HHeJ_T0016167.1 MGP_C3HHeJ_G0014271.1 mouse_genomes_project X 60112563 60112916 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096082.1 MGP_C3HHeJ_G0035504.1 mouse_genomes_project X 70440751 70471486 + MGP_C3HHeJ_P0096082 Tktl1 protein_coding protein_coding MGP_C3HHeJ_T0096083.1 MGP_C3HHeJ_G0035504.1 mouse_genomes_project X 70440782 70459933 + MGP_C3HHeJ_P0096083 Tktl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096374.1 MGP_C3HHeJ_G0035579.1 mouse_genomes_project X 88829667 89324752 - MGP_C3HHeJ_P0096374 Mageb18 protein_coding protein_coding MGP_C3HHeJ_T0096375.1 MGP_C3HHeJ_G0035579.1 mouse_genomes_project X 88829989 88831560 - MGP_C3HHeJ_P0096375 Mageb18 protein_coding protein_coding MGP_C3HHeJ_T0095207.1 MGP_C3HHeJ_G0035241.1 mouse_genomes_project X 4115092 4121065 - MGP_C3HHeJ_P0095207 Gm14862 protein_coding protein_coding MGP_C3HHeJ_T0011673.1 MGP_C3HHeJ_G0009806.1 mouse_genomes_project X 100725155 100725248 + Gm27987 misc_RNA misc_RNA MGP_C3HHeJ_T0095465.1 MGP_C3HHeJ_G0035325.1 mouse_genomes_project X 32479330 32490301 - MGP_C3HHeJ_P0095465 Rhox1 protein_coding protein_coding MGP_C3HHeJ_T0016181.1 MGP_C3HHeJ_G0014285.1 mouse_genomes_project X 64049900 64050203 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016121.1 MGP_C3HHeJ_G0014225.1 mouse_genomes_project X 49325459 49325753 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095209.1 MGP_C3HHeJ_G0035243.1 mouse_genomes_project X 4286457 4320405 - MGP_C3HHeJ_P0095209 Cybb protein_coding protein_coding MGP_C3HHeJ_T0095210.1 MGP_C3HHeJ_G0035243.1 mouse_genomes_project X 4298045 4320350 - MGP_C3HHeJ_P0095210 Cybb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095211.1 MGP_C3HHeJ_G0035243.1 mouse_genomes_project X 4300503 4302653 - Cybb protein_coding retained_intron MGP_C3HHeJ_T0095212.1 MGP_C3HHeJ_G0035243.1 mouse_genomes_project X 4308137 4345934 - MGP_C3HHeJ_P0095212 Cybb protein_coding protein_coding MGP_C3HHeJ_T0095213.1 MGP_C3HHeJ_G0035243.1 mouse_genomes_project X 4316069 4320351 - Cybb protein_coding retained_intron MGP_C3HHeJ_T0095142.1 MGP_C3HHeJ_G0035220.1 mouse_genomes_project X 2751880 2765469 - MGP_C3HHeJ_P0095142 Suv39h1 protein_coding protein_coding MGP_C3HHeJ_T0095143.1 MGP_C3HHeJ_G0035220.1 mouse_genomes_project X 2752135 2765330 - Suv39h1 protein_coding retained_intron MGP_C3HHeJ_T0095144.1 MGP_C3HHeJ_G0035220.1 mouse_genomes_project X 2752144 2764967 - MGP_C3HHeJ_P0095144 Suv39h1 protein_coding protein_coding MGP_C3HHeJ_T0095145.1 MGP_C3HHeJ_G0035220.1 mouse_genomes_project X 2758118 2765438 - MGP_C3HHeJ_P0095145 Suv39h1 protein_coding protein_coding MGP_C3HHeJ_T0095146.1 MGP_C3HHeJ_G0035220.1 mouse_genomes_project X 2761138 2765022 - Suv39h1 protein_coding retained_intron MGP_C3HHeJ_T0011065.1 MGP_C3HHeJ_G0009198.1 mouse_genomes_project X 57095242 57095335 + Gm24396 miRNA miRNA MGP_C3HHeJ_T0011687.1 MGP_C3HHeJ_G0009820.1 mouse_genomes_project X 150950460 150950770 - Gm26035 misc_RNA misc_RNA MGP_C3HHeJ_T0102336.1 MGP_C3HHeJ_G0040299.1 mouse_genomes_project X 8135617 8135755 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102351.1 MGP_C3HHeJ_G0040314.1 mouse_genomes_project X 72728786 72729746 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016637.1 MGP_C3HHeJ_G0014741.1 mouse_genomes_project X 155794675 155795372 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011024.1 MGP_C3HHeJ_G0009157.1 mouse_genomes_project X 1871940 1872032 - Mir500 miRNA miRNA MGP_C3HHeJ_T0015992.1 MGP_C3HHeJ_G0014096.1 mouse_genomes_project X 6502554 6502770 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097468.1 MGP_C3HHeJ_G0035891.1 mouse_genomes_project X 156071748 156313682 - MGP_C3HHeJ_P0097468 Cnksr2 protein_coding protein_coding MGP_C3HHeJ_T0097469.1 MGP_C3HHeJ_G0035891.1 mouse_genomes_project X 156083055 156313682 - MGP_C3HHeJ_P0097469 Cnksr2 protein_coding protein_coding MGP_C3HHeJ_T0097470.1 MGP_C3HHeJ_G0035891.1 mouse_genomes_project X 156108846 156117644 - Cnksr2 protein_coding retained_intron MGP_C3HHeJ_T0097438.1 MGP_C3HHeJ_G0035882.1 mouse_genomes_project X 153546943 153561493 - MGP_C3HHeJ_P0097438 Prdx4 protein_coding protein_coding MGP_C3HHeJ_T0097439.1 MGP_C3HHeJ_G0035882.1 mouse_genomes_project X 153551471 153563780 - MGP_C3HHeJ_P0097439 Prdx4 protein_coding protein_coding MGP_C3HHeJ_T0097440.1 MGP_C3HHeJ_G0035882.1 mouse_genomes_project X 153559817 153561500 - Prdx4 protein_coding processed_transcript MGP_C3HHeJ_T0096442.1 MGP_C3HHeJ_G0035595.1 mouse_genomes_project X 92263141 92289390 - MGP_C3HHeJ_P0096442 Amer1 protein_coding protein_coding MGP_C3HHeJ_T0101051.1 MGP_C3HHeJ_G0039245.1 mouse_genomes_project X 129753301 129753432 - Gm23768 snoRNA snoRNA MGP_C3HHeJ_T0096046.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70273783 70283888 - MGP_C3HHeJ_P0096046 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096047.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70273787 70283885 - MGP_C3HHeJ_P0096047 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096048.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70273795 70283885 - MGP_C3HHeJ_P0096048 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096049.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70273795 70283885 - MGP_C3HHeJ_P0096049 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096050.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70274671 70283796 - Irak1 protein_coding retained_intron MGP_C3HHeJ_T0096051.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70274671 70283796 - Irak1 protein_coding retained_intron MGP_C3HHeJ_T0096052.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70274836 70283883 - MGP_C3HHeJ_P0096052 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096053.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70275223 70278200 - MGP_C3HHeJ_P0096053 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096054.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70275237 70279807 - MGP_C3HHeJ_P0096054 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096055.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70275305 70283715 - MGP_C3HHeJ_P0096055 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096056.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70275305 70283715 - MGP_C3HHeJ_P0096056 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096057.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70276413 70280854 - MGP_C3HHeJ_P0096057 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096058.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70276995 70282362 - MGP_C3HHeJ_P0096058 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096059.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70280865 70282517 - Irak1 protein_coding retained_intron MGP_C3HHeJ_T0096060.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70280865 70282957 - MGP_C3HHeJ_P0096060 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096061.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70282052 70283039 - MGP_C3HHeJ_P0096061 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096062.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70282094 70282810 - MGP_C3HHeJ_P0096062 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096063.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70282103 70283697 - Irak1 protein_coding processed_transcript MGP_C3HHeJ_T0096064.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70282483 70283778 - Irak1 protein_coding retained_intron MGP_C3HHeJ_T0096065.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70282498 70283346 - Irak1 protein_coding retained_intron MGP_C3HHeJ_T0096066.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70282611 70283478 - Irak1 protein_coding processed_transcript MGP_C3HHeJ_T0096067.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70282960 70283801 - Irak1 protein_coding retained_intron MGP_C3HHeJ_T0016331.1 MGP_C3HHeJ_G0014435.1 mouse_genomes_project X 93923967 93924772 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095416.1 MGP_C3HHeJ_G0035304.1 mouse_genomes_project X 31332940 31393115 + MGP_C3HHeJ_P0095416 Il13ra1 protein_coding protein_coding MGP_C3HHeJ_T0097039.1 MGP_C3HHeJ_G0035778.1 mouse_genomes_project X 133638463 133639516 + MGP_C3HHeJ_P0097039 Ngfrap1 protein_coding protein_coding MGP_C3HHeJ_T0096230.1 MGP_C3HHeJ_G0035531.1 mouse_genomes_project X 71295210 71391006 - MGP_C3HHeJ_P0096230 Gab3 protein_coding protein_coding MGP_C3HHeJ_T0096231.1 MGP_C3HHeJ_G0035531.1 mouse_genomes_project X 71295388 71390849 - MGP_C3HHeJ_P0096231 Gab3 protein_coding protein_coding MGP_C3HHeJ_T0096232.1 MGP_C3HHeJ_G0035531.1 mouse_genomes_project X 71295390 71392455 - Gab3 protein_coding processed_transcript MGP_C3HHeJ_T0102358.1 MGP_C3HHeJ_G0040321.1 mouse_genomes_project X 82776696 82777728 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0097049.1 MGP_C3HHeJ_G0035784.1 mouse_genomes_project X 134272415 134295652 + MGP_C3HHeJ_P0097049 Plp1 protein_coding protein_coding MGP_C3HHeJ_T0097050.1 MGP_C3HHeJ_G0035784.1 mouse_genomes_project X 134272534 134293710 + MGP_C3HHeJ_P0097050 Plp1 protein_coding protein_coding MGP_C3HHeJ_T0097051.1 MGP_C3HHeJ_G0035784.1 mouse_genomes_project X 134287373 134288804 + Plp1 protein_coding retained_intron MGP_C3HHeJ_T0097052.1 MGP_C3HHeJ_G0035784.1 mouse_genomes_project X 134289462 134290702 + Plp1 protein_coding retained_intron MGP_C3HHeJ_T0016622.1 MGP_C3HHeJ_G0014726.1 mouse_genomes_project X 153177560 153179995 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016024.1 MGP_C3HHeJ_G0014128.1 mouse_genomes_project X 13963667 13964073 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095302.1 MGP_C3HHeJ_G0035271.1 mouse_genomes_project X 13154614 13155459 + MGP_C3HHeJ_P0095302 Dusp21 protein_coding protein_coding MGP_C3HHeJ_T0102371.1 MGP_C3HHeJ_G0040334.1 mouse_genomes_project X 145465223 145465551 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099797.1 MGP_C3HHeJ_G0037991.1 mouse_genomes_project X 125842632 125842740 + Gm24522 snRNA snRNA MGP_C3HHeJ_T0016136.1 MGP_C3HHeJ_G0014240.1 mouse_genomes_project X 54318184 54318601 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005544.1 MGP_C3HHeJ_G0004661.1 mouse_genomes_project X 160266876 160267431 + Gm15202 antisense antisense MGP_C3HHeJ_T0097168.1 MGP_C3HHeJ_G0035821.1 mouse_genomes_project X 139480590 139481625 - MGP_C3HHeJ_P0097168 protein_coding protein_coding MGP_C3HHeJ_T0009315.1 MGP_C3HHeJ_G0007472.1 mouse_genomes_project X 96279746 96290115 - Gm14809 lincRNA lincRNA MGP_C3HHeJ_T0095897.1 MGP_C3HHeJ_G0035468.1 mouse_genomes_project X 69016173 69033599 + MGP_C3HHeJ_P0095897 Gabrq protein_coding protein_coding MGP_C3HHeJ_T0095898.1 MGP_C3HHeJ_G0035468.1 mouse_genomes_project X 69016431 69029540 + MGP_C3HHeJ_P0095898 Gabrq protein_coding protein_coding MGP_C3HHeJ_T0009348.1 MGP_C3HHeJ_G0007491.1 mouse_genomes_project X 150279854 150306223 - Kantr lincRNA lincRNA MGP_C3HHeJ_T0009349.1 MGP_C3HHeJ_G0007491.1 mouse_genomes_project X 150280006 150306223 - Kantr lincRNA lincRNA MGP_C3HHeJ_T0009350.1 MGP_C3HHeJ_G0007491.1 mouse_genomes_project X 150280006 150306223 - Kantr lincRNA lincRNA MGP_C3HHeJ_T0009351.1 MGP_C3HHeJ_G0007491.1 mouse_genomes_project X 150280083 150306191 - Kantr lincRNA lincRNA MGP_C3HHeJ_T0009352.1 MGP_C3HHeJ_G0007491.1 mouse_genomes_project X 150293956 150296739 - Kantr lincRNA lincRNA MGP_C3HHeJ_T0009353.1 MGP_C3HHeJ_G0007491.1 mouse_genomes_project X 150294052 150306198 - Kantr lincRNA lincRNA MGP_C3HHeJ_T0009354.1 MGP_C3HHeJ_G0007491.1 mouse_genomes_project X 150298524 150306198 - Kantr lincRNA lincRNA MGP_C3HHeJ_T0016306.1 MGP_C3HHeJ_G0014410.1 mouse_genomes_project X 90767257 90768024 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096359.1 MGP_C3HHeJ_G0035568.1 mouse_genomes_project X 82589462 82593646 + MGP_C3HHeJ_P0096359 Nr0b1 protein_coding protein_coding MGP_C3HHeJ_T0016475.1 MGP_C3HHeJ_G0014579.1 mouse_genomes_project X 119961025 119961766 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005535.1 MGP_C3HHeJ_G0004656.1 mouse_genomes_project X 149235498 149294064 - A230072E10Rik antisense antisense MGP_C3HHeJ_T0005536.1 MGP_C3HHeJ_G0004656.1 mouse_genomes_project X 149236748 149242810 - A230072E10Rik antisense antisense MGP_C3HHeJ_T0005537.1 MGP_C3HHeJ_G0004656.1 mouse_genomes_project X 149236748 149260696 - A230072E10Rik antisense antisense MGP_C3HHeJ_T0005538.1 MGP_C3HHeJ_G0004656.1 mouse_genomes_project X 149262622 149291097 - A230072E10Rik antisense antisense MGP_C3HHeJ_T0097492.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 157935675 158299604 + MGP_C3HHeJ_P0097492 Sh3kbp1 protein_coding protein_coding MGP_C3HHeJ_T0097493.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 157935944 158238297 + Sh3kbp1 protein_coding retained_intron MGP_C3HHeJ_T0097494.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 157935944 158294704 + MGP_C3HHeJ_P0097494 Sh3kbp1 protein_coding protein_coding MGP_C3HHeJ_T0097495.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158007403 158182229 + MGP_C3HHeJ_P0097495 Sh3kbp1 protein_coding protein_coding MGP_C3HHeJ_T0097496.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158018690 158295702 + MGP_C3HHeJ_P0097496 Sh3kbp1 protein_coding protein_coding MGP_C3HHeJ_T0097497.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158018690 158295400 + MGP_C3HHeJ_P0097497 Sh3kbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097498.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158155489 158297199 + MGP_C3HHeJ_P0097498 Sh3kbp1 protein_coding protein_coding MGP_C3HHeJ_T0097499.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158155502 158295702 + MGP_C3HHeJ_P0097499 Sh3kbp1 protein_coding protein_coding MGP_C3HHeJ_T0097500.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158155980 158297451 + Sh3kbp1 protein_coding processed_transcript MGP_C3HHeJ_T0097501.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158237070 158294854 + MGP_C3HHeJ_P0097501 Sh3kbp1 protein_coding protein_coding MGP_C3HHeJ_T0097502.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158260278 158293423 + Sh3kbp1 protein_coding processed_transcript MGP_C3HHeJ_T0097503.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158261274 158297452 + Sh3kbp1 protein_coding processed_transcript MGP_C3HHeJ_T0097504.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158261493 158295702 + Sh3kbp1 protein_coding processed_transcript MGP_C3HHeJ_T0097505.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158261599 158294725 + Sh3kbp1 protein_coding processed_transcript MGP_C3HHeJ_T0011118.1 MGP_C3HHeJ_G0009251.1 mouse_genomes_project X 133107427 133107531 - Mir1970 miRNA miRNA MGP_C3HHeJ_T0016129.1 MGP_C3HHeJ_G0014233.1 mouse_genomes_project X 53514838 53515084 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096864.1 MGP_C3HHeJ_G0035716.1 mouse_genomes_project X 112052938 112053823 + MGP_C3HHeJ_P0096864 Ube2dnl1 protein_coding protein_coding MGP_C3HHeJ_T0018394.1 MGP_C3HHeJ_G0015536.1 mouse_genomes_project X 48220334 48222365 - Kis2 processed_transcript processed_transcript MGP_C3HHeJ_T0018395.1 MGP_C3HHeJ_G0015536.1 mouse_genomes_project X 48220334 48222365 - Kis2 processed_transcript processed_transcript MGP_C3HHeJ_T0018396.1 MGP_C3HHeJ_G0015536.1 mouse_genomes_project X 48220334 48222365 - Kis2 processed_transcript processed_transcript MGP_C3HHeJ_T0018397.1 MGP_C3HHeJ_G0015536.1 mouse_genomes_project X 48220336 48222732 - Kis2 processed_transcript processed_transcript MGP_C3HHeJ_T0011679.1 MGP_C3HHeJ_G0009812.1 mouse_genomes_project X 129883360 129883563 + Gm22143 misc_RNA misc_RNA MGP_C3HHeJ_T0016616.1 MGP_C3HHeJ_G0014720.1 mouse_genomes_project X 151588084 151588469 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097951.1 MGP_C3HHeJ_G0036163.1 mouse_genomes_project X 46653357 46654464 - pseudogene pseudogene MGP_C3HHeJ_T0011081.1 MGP_C3HHeJ_G0009214.1 mouse_genomes_project X 62909246 62909320 - Mir465 miRNA miRNA MGP_C3HHeJ_T0097044.1 MGP_C3HHeJ_G0035782.1 mouse_genomes_project X 134180885 134191534 - MGP_C3HHeJ_P0097044 Morf4l2 protein_coding protein_coding MGP_C3HHeJ_T0097045.1 MGP_C3HHeJ_G0035782.1 mouse_genomes_project X 134182271 134190363 - MGP_C3HHeJ_P0097045 Morf4l2 protein_coding protein_coding MGP_C3HHeJ_T0097046.1 MGP_C3HHeJ_G0035782.1 mouse_genomes_project X 134185474 134191151 - Morf4l2 protein_coding processed_transcript MGP_C3HHeJ_T0016044.1 MGP_C3HHeJ_G0014148.1 mouse_genomes_project X 17578678 17579221 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016671.1 MGP_C3HHeJ_G0014775.1 mouse_genomes_project X 161286129 161286529 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096882.1 MGP_C3HHeJ_G0035725.1 mouse_genomes_project X 119611580 119614415 - MGP_C3HHeJ_P0096882 Nap1l3 protein_coding protein_coding MGP_C3HHeJ_T0096084.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70489786 70516397 - MGP_C3HHeJ_P0096084 Flna protein_coding protein_coding MGP_C3HHeJ_T0096085.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70489786 70513241 - MGP_C3HHeJ_P0096085 Flna protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096086.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70489788 70513377 - MGP_C3HHeJ_P0096086 Flna protein_coding protein_coding MGP_C3HHeJ_T0096087.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70489866 70513398 - MGP_C3HHeJ_P0096087 Flna protein_coding protein_coding MGP_C3HHeJ_T0096088.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70490114 70513207 - MGP_C3HHeJ_P0096088 Flna protein_coding protein_coding MGP_C3HHeJ_T0096089.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70491135 70492805 - Flna protein_coding processed_transcript MGP_C3HHeJ_T0096090.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70491159 70493115 - Flna protein_coding retained_intron MGP_C3HHeJ_T0096091.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70492773 70493946 - Flna protein_coding retained_intron MGP_C3HHeJ_T0096092.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70493197 70494815 - MGP_C3HHeJ_P0096092 Flna protein_coding protein_coding MGP_C3HHeJ_T0096093.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70493562 70494294 - Flna protein_coding retained_intron MGP_C3HHeJ_T0096094.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70494177 70495389 - MGP_C3HHeJ_P0096094 Flna protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096095.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70494411 70495125 - Flna protein_coding retained_intron MGP_C3HHeJ_T0096096.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70494705 70496896 - MGP_C3HHeJ_P0096096 Flna protein_coding protein_coding MGP_C3HHeJ_T0096097.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70497021 70502289 - Flna protein_coding processed_transcript MGP_C3HHeJ_T0096098.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70502407 70504759 - Flna protein_coding processed_transcript MGP_C3HHeJ_T0016543.1 MGP_C3HHeJ_G0014647.1 mouse_genomes_project X 137441717 137443197 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095338.1 MGP_C3HHeJ_G0035282.1 mouse_genomes_project X 15767143 15792306 + MGP_C3HHeJ_P0095338 Uba1 protein_coding protein_coding MGP_C3HHeJ_T0095339.1 MGP_C3HHeJ_G0035282.1 mouse_genomes_project X 15767238 15779442 + Uba1 protein_coding processed_transcript MGP_C3HHeJ_T0095340.1 MGP_C3HHeJ_G0035282.1 mouse_genomes_project X 15768244 15778356 + Uba1 protein_coding processed_transcript MGP_C3HHeJ_T0095341.1 MGP_C3HHeJ_G0035282.1 mouse_genomes_project X 15772036 15792306 + MGP_C3HHeJ_P0095341 Uba1 protein_coding protein_coding MGP_C3HHeJ_T0095342.1 MGP_C3HHeJ_G0035282.1 mouse_genomes_project X 15787215 15790327 + Uba1 protein_coding processed_transcript MGP_C3HHeJ_T0095343.1 MGP_C3HHeJ_G0035282.1 mouse_genomes_project X 15789721 15791332 + Uba1 protein_coding processed_transcript MGP_C3HHeJ_T0096714.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103007048 103144837 - MGP_C3HHeJ_P0096714 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096715.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103009850 103011484 - Atrx protein_coding retained_intron MGP_C3HHeJ_T0096716.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103011183 103013233 - Atrx protein_coding retained_intron MGP_C3HHeJ_T0096717.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103027458 103035724 - MGP_C3HHeJ_P0096717 Atrx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096718.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103027484 103039250 - Atrx protein_coding processed_transcript MGP_C3HHeJ_T0096719.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103035742 103047880 - MGP_C3HHeJ_P0096719 Atrx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096720.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103047632 103057113 - Atrx protein_coding retained_intron MGP_C3HHeJ_T0096721.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103047987 103057297 - Atrx protein_coding retained_intron MGP_C3HHeJ_T0096722.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103056723 103062164 - Atrx protein_coding retained_intron MGP_C3HHeJ_T0096723.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103057076 103061879 - Atrx protein_coding retained_intron MGP_C3HHeJ_T0096724.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103061789 103087338 - Atrx protein_coding retained_intron MGP_C3HHeJ_T0096725.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103062351 103087669 - MGP_C3HHeJ_P0096725 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096726.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103066955 103101586 - MGP_C3HHeJ_P0096726 Atrx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096727.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103077089 103087379 - MGP_C3HHeJ_P0096727 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096728.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103087203 103144800 - MGP_C3HHeJ_P0096728 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096729.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103088581 103144776 - MGP_C3HHeJ_P0096729 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096730.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103089033 103144804 - MGP_C3HHeJ_P0096730 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096731.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103089033 103144784 - MGP_C3HHeJ_P0096731 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096732.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103089313 103144801 - MGP_C3HHeJ_P0096732 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096733.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103089514 103144793 - MGP_C3HHeJ_P0096733 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096734.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103089553 103144781 - MGP_C3HHeJ_P0096734 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096735.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103090438 103092457 - Atrx protein_coding retained_intron MGP_C3HHeJ_T0096736.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103090458 103144672 - MGP_C3HHeJ_P0096736 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096737.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103094024 103144066 - MGP_C3HHeJ_P0096737 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096738.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103098118 103144737 - MGP_C3HHeJ_P0096738 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096739.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103101543 103144831 - MGP_C3HHeJ_P0096739 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096740.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103114744 103144780 - Atrx protein_coding processed_transcript MGP_C3HHeJ_T0016419.1 MGP_C3HHeJ_G0014523.1 mouse_genomes_project X 109491446 109491718 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097308.1 MGP_C3HHeJ_G0035849.1 mouse_genomes_project X 148983638 149030169 + MGP_C3HHeJ_P0097308 Fgd1 protein_coding protein_coding MGP_C3HHeJ_T0097309.1 MGP_C3HHeJ_G0035849.1 mouse_genomes_project X 148984658 149030169 + MGP_C3HHeJ_P0097309 Fgd1 protein_coding protein_coding MGP_C3HHeJ_T0097310.1 MGP_C3HHeJ_G0035849.1 mouse_genomes_project X 149006749 149009035 + Fgd1 protein_coding retained_intron MGP_C3HHeJ_T0097311.1 MGP_C3HHeJ_G0035849.1 mouse_genomes_project X 149026757 149027829 + Fgd1 protein_coding retained_intron MGP_C3HHeJ_T0009291.1 MGP_C3HHeJ_G0007453.1 mouse_genomes_project X 34048537 34078701 - Gm14565 lincRNA lincRNA MGP_C3HHeJ_T0095205.1 MGP_C3HHeJ_G0035239.1 mouse_genomes_project X 3958932 3960713 + MGP_C3HHeJ_P0095205 4930402K13Rik protein_coding protein_coding MGP_C3HHeJ_T0002440.1 MGP_C3HHeJ_G0002358.1 mouse_genomes_project X 37531286 37533477 - TEC TEC MGP_C3HHeJ_T0016017.1 MGP_C3HHeJ_G0014121.1 mouse_genomes_project X 11600713 11603308 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015971.1 MGP_C3HHeJ_G0014075.1 mouse_genomes_project X 2554682 2555952 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101031.1 MGP_C3HHeJ_G0039225.1 mouse_genomes_project X 71409933 71410051 + Gm25520 snoRNA snoRNA MGP_C3HHeJ_T0096639.1 MGP_C3HHeJ_G0035643.1 mouse_genomes_project X 98737223 98741623 + MGP_C3HHeJ_P0096639 8030474K03Rik protein_coding protein_coding MGP_C3HHeJ_T0096640.1 MGP_C3HHeJ_G0035643.1 mouse_genomes_project X 98737253 98741625 + 8030474K03Rik protein_coding processed_transcript MGP_C3HHeJ_T0096641.1 MGP_C3HHeJ_G0035643.1 mouse_genomes_project X 98739655 98741627 + MGP_C3HHeJ_P0096641 8030474K03Rik protein_coding protein_coding MGP_C3HHeJ_T0016438.1 MGP_C3HHeJ_G0014542.1 mouse_genomes_project X 112098593 112099099 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016387.1 MGP_C3HHeJ_G0014491.1 mouse_genomes_project X 102706856 102707462 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016305.1 MGP_C3HHeJ_G0014409.1 mouse_genomes_project X 90730918 90731420 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095962.1 MGP_C3HHeJ_G0035491.1 mouse_genomes_project X 70027815 70035750 - Idh3g protein_coding retained_intron MGP_C3HHeJ_T0095963.1 MGP_C3HHeJ_G0035491.1 mouse_genomes_project X 70027815 70035750 - MGP_C3HHeJ_P0095963 Idh3g protein_coding protein_coding MGP_C3HHeJ_T0095964.1 MGP_C3HHeJ_G0035491.1 mouse_genomes_project X 70027895 70029750 - Idh3g protein_coding retained_intron MGP_C3HHeJ_T0095965.1 MGP_C3HHeJ_G0035491.1 mouse_genomes_project X 70028522 70029549 - Idh3g protein_coding retained_intron MGP_C3HHeJ_T0095966.1 MGP_C3HHeJ_G0035491.1 mouse_genomes_project X 70028888 70029665 - Idh3g protein_coding retained_intron MGP_C3HHeJ_T0095967.1 MGP_C3HHeJ_G0035491.1 mouse_genomes_project X 70028926 70035475 - Idh3g protein_coding processed_transcript MGP_C3HHeJ_T0095968.1 MGP_C3HHeJ_G0035491.1 mouse_genomes_project X 70029273 70030560 - Idh3g protein_coding retained_intron MGP_C3HHeJ_T0095969.1 MGP_C3HHeJ_G0035491.1 mouse_genomes_project X 70029440 70031072 - Idh3g protein_coding retained_intron MGP_C3HHeJ_T0095970.1 MGP_C3HHeJ_G0035491.1 mouse_genomes_project X 70029831 70031221 - Idh3g protein_coding processed_transcript MGP_C3HHeJ_T0097402.1 MGP_C3HHeJ_G0035866.1 mouse_genomes_project X 151079446 151080856 - MGP_C3HHeJ_P0097402 Mageh1 protein_coding protein_coding MGP_C3HHeJ_T0095461.1 MGP_C3HHeJ_G0035321.1 mouse_genomes_project X 32411565 32430596 - MGP_C3HHeJ_P0095461 Akap14 protein_coding protein_coding MGP_C3HHeJ_T0015975.1 MGP_C3HHeJ_G0014079.1 mouse_genomes_project X 2727894 2728416 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097403.1 MGP_C3HHeJ_G0035867.1 mouse_genomes_project X 151172049 151186376 + MGP_C3HHeJ_P0097403 Foxr2 protein_coding protein_coding MGP_C3HHeJ_T0097404.1 MGP_C3HHeJ_G0035867.1 mouse_genomes_project X 151180427 151186376 + MGP_C3HHeJ_P0097404 Foxr2 protein_coding protein_coding MGP_C3HHeJ_T0102377.1 MGP_C3HHeJ_G0040340.1 mouse_genomes_project X 157379378 157383021 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095534.1 MGP_C3HHeJ_G0035347.1 mouse_genomes_project X 37439796 37452776 + Xiap protein_coding processed_transcript MGP_C3HHeJ_T0095535.1 MGP_C3HHeJ_G0035347.1 mouse_genomes_project X 37447948 37491332 + MGP_C3HHeJ_P0095535 Xiap protein_coding protein_coding MGP_C3HHeJ_T0095536.1 MGP_C3HHeJ_G0035347.1 mouse_genomes_project X 37448536 37491332 + MGP_C3HHeJ_P0095536 Xiap protein_coding protein_coding MGP_C3HHeJ_T0095537.1 MGP_C3HHeJ_G0035347.1 mouse_genomes_project X 37448548 37452776 + Xiap protein_coding processed_transcript MGP_C3HHeJ_T0095538.1 MGP_C3HHeJ_G0035347.1 mouse_genomes_project X 37448893 37491332 + Xiap protein_coding processed_transcript MGP_C3HHeJ_T0095539.1 MGP_C3HHeJ_G0035347.1 mouse_genomes_project X 37451463 37491332 + MGP_C3HHeJ_P0095539 Xiap protein_coding protein_coding MGP_C3HHeJ_T0095540.1 MGP_C3HHeJ_G0035347.1 mouse_genomes_project X 37475401 37491332 + MGP_C3HHeJ_P0095540 Xiap protein_coding protein_coding MGP_C3HHeJ_T0018386.1 MGP_C3HHeJ_G0015535.1 mouse_genomes_project X 45986952 45996366 - processed_transcript processed_transcript MGP_C3HHeJ_T0018387.1 MGP_C3HHeJ_G0015535.1 mouse_genomes_project X 45986952 46062159 - processed_transcript processed_transcript MGP_C3HHeJ_T0018388.1 MGP_C3HHeJ_G0015535.1 mouse_genomes_project X 45986959 45994354 - processed_transcript processed_transcript MGP_C3HHeJ_T0018389.1 MGP_C3HHeJ_G0015535.1 mouse_genomes_project X 45989274 46001847 - processed_transcript processed_transcript MGP_C3HHeJ_T0018390.1 MGP_C3HHeJ_G0015535.1 mouse_genomes_project X 45989483 45992511 - processed_transcript processed_transcript MGP_C3HHeJ_T0018391.1 MGP_C3HHeJ_G0015535.1 mouse_genomes_project X 46045566 46062201 - processed_transcript processed_transcript MGP_C3HHeJ_T0018392.1 MGP_C3HHeJ_G0015535.1 mouse_genomes_project X 46053348 46062209 - processed_transcript processed_transcript MGP_C3HHeJ_T0018393.1 MGP_C3HHeJ_G0015535.1 mouse_genomes_project X 46053348 46062219 - processed_transcript processed_transcript MGP_C3HHeJ_T0018379.1 MGP_C3HHeJ_G0015531.1 mouse_genomes_project X 7982129 7985315 + 5730405O15Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018380.1 MGP_C3HHeJ_G0015531.1 mouse_genomes_project X 7982165 7985402 + 5730405O15Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016504.1 MGP_C3HHeJ_G0014608.1 mouse_genomes_project X 132006894 132008929 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016006.1 MGP_C3HHeJ_G0014110.1 mouse_genomes_project X 8272966 8275227 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016355.1 MGP_C3HHeJ_G0014459.1 mouse_genomes_project X 99631873 99632467 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016398.1 MGP_C3HHeJ_G0014502.1 mouse_genomes_project X 104027233 104027451 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018439.1 MGP_C3HHeJ_G0015547.1 mouse_genomes_project X 131126489 131128992 - 4930570D08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0096816.1 MGP_C3HHeJ_G0035702.1 mouse_genomes_project X 108417684 108438558 + MGP_C3HHeJ_P0096816 Cylc1 protein_coding protein_coding MGP_C3HHeJ_T0016171.1 MGP_C3HHeJ_G0014275.1 mouse_genomes_project X 61218272 61218522 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096996.1 MGP_C3HHeJ_G0035762.1 mouse_genomes_project X 132803811 132814911 + MGP_C3HHeJ_P0096996 protein_coding protein_coding MGP_C3HHeJ_T0101046.1 MGP_C3HHeJ_G0039240.1 mouse_genomes_project X 118933603 118933739 + Gm23277 snoRNA snoRNA MGP_C3HHeJ_T0009277.1 MGP_C3HHeJ_G0007444.1 mouse_genomes_project X 8198340 8199983 - 2010308F09Rik lincRNA lincRNA MGP_C3HHeJ_T0009278.1 MGP_C3HHeJ_G0007444.1 mouse_genomes_project X 8198383 8214099 - 2010308F09Rik lincRNA lincRNA MGP_C3HHeJ_T0101066.1 MGP_C3HHeJ_G0039260.1 mouse_genomes_project X 155675836 155675972 + Gm24281 snoRNA snoRNA MGP_C3HHeJ_T0095889.1 MGP_C3HHeJ_G0035464.1 mouse_genomes_project X 68406101 68407049 + MGP_C3HHeJ_P0095889 Magea4 protein_coding protein_coding MGP_C3HHeJ_T0098227.1 MGP_C3HHeJ_G0036439.1 mouse_genomes_project X 99901920 99902021 - Gm26152 rRNA rRNA MGP_C3HHeJ_T0095953.1 MGP_C3HHeJ_G0035489.1 mouse_genomes_project X 70005883 70021367 + Plxnb3 protein_coding retained_intron MGP_C3HHeJ_T0095954.1 MGP_C3HHeJ_G0035489.1 mouse_genomes_project X 70005883 70021367 + Plxnb3 protein_coding retained_intron MGP_C3HHeJ_T0095955.1 MGP_C3HHeJ_G0035489.1 mouse_genomes_project X 70005883 70021367 + Plxnb3 protein_coding retained_intron MGP_C3HHeJ_T0095956.1 MGP_C3HHeJ_G0035489.1 mouse_genomes_project X 70005892 70021367 + MGP_C3HHeJ_P0095956 Plxnb3 protein_coding protein_coding MGP_C3HHeJ_T0095957.1 MGP_C3HHeJ_G0035489.1 mouse_genomes_project X 70014384 70018518 + Plxnb3 protein_coding retained_intron MGP_C3HHeJ_T0101036.1 MGP_C3HHeJ_G0039230.1 mouse_genomes_project X 89895978 89896061 + Gm24123 snoRNA snoRNA MGP_C3HHeJ_T0015979.1 MGP_C3HHeJ_G0014083.1 mouse_genomes_project X 3419452 3421937 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005519.1 MGP_C3HHeJ_G0004643.1 mouse_genomes_project X 71895420 71896128 + Gm15384 antisense antisense MGP_C3HHeJ_T0011123.1 MGP_C3HHeJ_G0009256.1 mouse_genomes_project X 141466127 141466249 - miRNA miRNA MGP_C3HHeJ_T0099769.1 MGP_C3HHeJ_G0037963.1 mouse_genomes_project X 60939559 60939665 + Gm26111 snRNA snRNA MGP_C3HHeJ_T0016474.1 MGP_C3HHeJ_G0014578.1 mouse_genomes_project X 119675725 119676028 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005504.1 MGP_C3HHeJ_G0004630.1 mouse_genomes_project X 32161474 32162626 + Gm15008 antisense antisense MGP_C3HHeJ_T0015982.1 MGP_C3HHeJ_G0014086.1 mouse_genomes_project X 3842558 3843838 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097103.1 MGP_C3HHeJ_G0035801.1 mouse_genomes_project X 137084136 137205325 + MGP_C3HHeJ_P0097103 Rnf128 protein_coding protein_coding MGP_C3HHeJ_T0097104.1 MGP_C3HHeJ_G0035801.1 mouse_genomes_project X 137136398 137205332 + MGP_C3HHeJ_P0097104 Rnf128 protein_coding protein_coding MGP_C3HHeJ_T0097105.1 MGP_C3HHeJ_G0035801.1 mouse_genomes_project X 137137145 137203927 + Rnf128 protein_coding processed_transcript MGP_C3HHeJ_T0096883.1 MGP_C3HHeJ_G0035726.1 mouse_genomes_project X 123961279 123964677 - MGP_C3HHeJ_P0096883 4932411N23Rik protein_coding protein_coding MGP_C3HHeJ_T0016276.1 MGP_C3HHeJ_G0014380.1 mouse_genomes_project X 85210694 85211816 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095479.1 MGP_C3HHeJ_G0035335.1 mouse_genomes_project X 33494347 33501616 + MGP_C3HHeJ_P0095479 Zbtb33 protein_coding protein_coding MGP_C3HHeJ_T0095480.1 MGP_C3HHeJ_G0035335.1 mouse_genomes_project X 33494366 33499239 + MGP_C3HHeJ_P0095480 Zbtb33 protein_coding protein_coding MGP_C3HHeJ_T0095481.1 MGP_C3HHeJ_G0035335.1 mouse_genomes_project X 33494388 33498623 + MGP_C3HHeJ_P0095481 Zbtb33 protein_coding protein_coding MGP_C3HHeJ_T0016213.1 MGP_C3HHeJ_G0014317.1 mouse_genomes_project X 71316202 71317218 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101026.1 MGP_C3HHeJ_G0039220.1 mouse_genomes_project X 66799375 66799507 + Gm22785 snoRNA snoRNA MGP_C3HHeJ_T0016265.1 MGP_C3HHeJ_G0014369.1 mouse_genomes_project X 83205299 83205609 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096834.1 MGP_C3HHeJ_G0035707.1 mouse_genomes_project X 109432730 109437525 + MGP_C3HHeJ_P0096834 4933403O08Rik protein_coding protein_coding MGP_C3HHeJ_T0096835.1 MGP_C3HHeJ_G0035707.1 mouse_genomes_project X 109434145 109437525 + MGP_C3HHeJ_P0096835 4933403O08Rik protein_coding protein_coding MGP_C3HHeJ_T0096836.1 MGP_C3HHeJ_G0035707.1 mouse_genomes_project X 109434254 109437452 + MGP_C3HHeJ_P0096836 4933403O08Rik protein_coding protein_coding MGP_C3HHeJ_T0096990.1 MGP_C3HHeJ_G0035757.1 mouse_genomes_project X 132494380 132496597 - MGP_C3HHeJ_P0096990 Tceal6 protein_coding protein_coding MGP_C3HHeJ_T0097694.1 MGP_C3HHeJ_G0035947.1 mouse_genomes_project X 167704439 167715576 - MGP_C3HHeJ_P0097694 Amelx protein_coding protein_coding MGP_C3HHeJ_T0097695.1 MGP_C3HHeJ_G0035947.1 mouse_genomes_project X 167708347 167715576 - Amelx protein_coding processed_transcript MGP_C3HHeJ_T0097696.1 MGP_C3HHeJ_G0035947.1 mouse_genomes_project X 167708347 167715576 - MGP_C3HHeJ_P0097696 Amelx protein_coding protein_coding MGP_C3HHeJ_T0097697.1 MGP_C3HHeJ_G0035947.1 mouse_genomes_project X 167708347 167715576 - MGP_C3HHeJ_P0097697 Amelx protein_coding protein_coding MGP_C3HHeJ_T0097698.1 MGP_C3HHeJ_G0035947.1 mouse_genomes_project X 167708347 167715576 - MGP_C3HHeJ_P0097698 Amelx protein_coding protein_coding MGP_C3HHeJ_T0097447.1 MGP_C3HHeJ_G0035886.1 mouse_genomes_project X 155689178 155743460 - MGP_C3HHeJ_P0097447 Sms protein_coding protein_coding MGP_C3HHeJ_T0097448.1 MGP_C3HHeJ_G0035886.1 mouse_genomes_project X 155706126 155710994 - Sms protein_coding retained_intron MGP_C3HHeJ_T0097449.1 MGP_C3HHeJ_G0035886.1 mouse_genomes_project X 155709006 155743217 - Sms protein_coding retained_intron MGP_C3HHeJ_T0097450.1 MGP_C3HHeJ_G0035886.1 mouse_genomes_project X 155715996 155742545 - MGP_C3HHeJ_P0097450 Sms protein_coding protein_coding MGP_C3HHeJ_T0016070.1 MGP_C3HHeJ_G0014174.1 mouse_genomes_project X 36318496 36319607 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016140.1 MGP_C3HHeJ_G0014244.1 mouse_genomes_project X 55781589 55782646 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016116.1 MGP_C3HHeJ_G0014220.1 mouse_genomes_project X 48357116 48357607 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011068.1 MGP_C3HHeJ_G0009201.1 mouse_genomes_project X 62841775 62841840 - Mir742 miRNA miRNA MGP_C3HHeJ_T0096656.1 MGP_C3HHeJ_G0035649.1 mouse_genomes_project X 99146346 99150800 - MGP_C3HHeJ_P0096656 Rps4x protein_coding protein_coding MGP_C3HHeJ_T0096657.1 MGP_C3HHeJ_G0035649.1 mouse_genomes_project X 99146479 99148143 - Rps4x protein_coding retained_intron MGP_C3HHeJ_T0096658.1 MGP_C3HHeJ_G0035649.1 mouse_genomes_project X 99149032 99150742 - Rps4x protein_coding retained_intron MGP_C3HHeJ_T0095044.1 MGP_C3HHeJ_G0035201.1 mouse_genomes_project X 2345630 2369640 + MGP_C3HHeJ_P0095044 Gpkow protein_coding protein_coding MGP_C3HHeJ_T0095045.1 MGP_C3HHeJ_G0035201.1 mouse_genomes_project X 2362060 2366505 + MGP_C3HHeJ_P0095045 Gpkow protein_coding protein_coding MGP_C3HHeJ_T0095046.1 MGP_C3HHeJ_G0035201.1 mouse_genomes_project X 2364408 2366694 + Gpkow protein_coding retained_intron MGP_C3HHeJ_T0016073.1 MGP_C3HHeJ_G0014177.1 mouse_genomes_project X 37118884 37120191 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095238.1 MGP_C3HHeJ_G0035252.1 mouse_genomes_project X 5605318 5606764 + Mid1ip1 protein_coding processed_transcript MGP_C3HHeJ_T0095239.1 MGP_C3HHeJ_G0035252.1 mouse_genomes_project X 5605324 5608701 + MGP_C3HHeJ_P0095239 Mid1ip1 protein_coding protein_coding MGP_C3HHeJ_T0095240.1 MGP_C3HHeJ_G0035252.1 mouse_genomes_project X 5607706 5610007 + MGP_C3HHeJ_P0095240 Mid1ip1 protein_coding protein_coding MGP_C3HHeJ_T0095241.1 MGP_C3HHeJ_G0035252.1 mouse_genomes_project X 5607706 5610007 + MGP_C3HHeJ_P0095241 Mid1ip1 protein_coding protein_coding MGP_C3HHeJ_T0095242.1 MGP_C3HHeJ_G0035252.1 mouse_genomes_project X 5607784 5608701 + MGP_C3HHeJ_P0095242 Mid1ip1 protein_coding protein_coding MGP_C3HHeJ_T0099795.1 MGP_C3HHeJ_G0037989.1 mouse_genomes_project X 124438821 124438926 + Gm22139 snRNA snRNA MGP_C3HHeJ_T0098234.1 MGP_C3HHeJ_G0036446.1 mouse_genomes_project X 157741515 157741624 + Gm23806 rRNA rRNA MGP_C3HHeJ_T0096262.1 MGP_C3HHeJ_G0035536.1 mouse_genomes_project X 71722284 71739893 + MGP_C3HHeJ_P0096262 Fundc2 protein_coding protein_coding MGP_C3HHeJ_T0096263.1 MGP_C3HHeJ_G0035536.1 mouse_genomes_project X 71722306 71727852 + Fundc2 protein_coding retained_intron MGP_C3HHeJ_T0096264.1 MGP_C3HHeJ_G0035536.1 mouse_genomes_project X 71727478 71737762 + Fundc2 protein_coding processed_transcript MGP_C3HHeJ_T0097041.1 MGP_C3HHeJ_G0035780.1 mouse_genomes_project X 133816318 133842106 - MGP_C3HHeJ_P0097041 Kir3dl2 protein_coding protein_coding MGP_C3HHeJ_T0095398.1 MGP_C3HHeJ_G0035299.1 mouse_genomes_project X 18370322 18438852 - MGP_C3HHeJ_P0095398 Klhl13 protein_coding protein_coding MGP_C3HHeJ_T0095399.1 MGP_C3HHeJ_G0035299.1 mouse_genomes_project X 18370330 18439754 - MGP_C3HHeJ_P0095399 Klhl13 protein_coding protein_coding MGP_C3HHeJ_T0095400.1 MGP_C3HHeJ_G0035299.1 mouse_genomes_project X 18370331 18469604 - MGP_C3HHeJ_P0095400 Klhl13 protein_coding protein_coding MGP_C3HHeJ_T0095401.1 MGP_C3HHeJ_G0035299.1 mouse_genomes_project X 18370331 18419932 - MGP_C3HHeJ_P0095401 Klhl13 protein_coding protein_coding MGP_C3HHeJ_T0095402.1 MGP_C3HHeJ_G0035299.1 mouse_genomes_project X 18387463 18450346 - Klhl13 protein_coding processed_transcript MGP_C3HHeJ_T0011131.1 MGP_C3HHeJ_G0009264.1 mouse_genomes_project X 148472133 148472194 - Mir3620 miRNA miRNA MGP_C3HHeJ_T0096225.1 MGP_C3HHeJ_G0035526.1 mouse_genomes_project X 71143912 71153025 + MGP_C3HHeJ_P0096225 protein_coding protein_coding MGP_C3HHeJ_T0011044.1 MGP_C3HHeJ_G0009177.1 mouse_genomes_project X 44103258 44103377 + Gm27828 miRNA miRNA MGP_C3HHeJ_T0095141.1 MGP_C3HHeJ_G0035219.1 mouse_genomes_project X 2687914 2703705 - MGP_C3HHeJ_P0095141 Glod5 protein_coding protein_coding MGP_C3HHeJ_T0016583.1 MGP_C3HHeJ_G0014687.1 mouse_genomes_project X 143292816 143293281 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095509.1 MGP_C3HHeJ_G0035345.1 mouse_genomes_project X 36783561 36996953 + Gria3 protein_coding retained_intron MGP_C3HHeJ_T0095510.1 MGP_C3HHeJ_G0035345.1 mouse_genomes_project X 36783795 37058659 + MGP_C3HHeJ_P0095510 Gria3 protein_coding protein_coding MGP_C3HHeJ_T0095511.1 MGP_C3HHeJ_G0035345.1 mouse_genomes_project X 36783937 37060675 + MGP_C3HHeJ_P0095511 Gria3 protein_coding protein_coding MGP_C3HHeJ_T0095512.1 MGP_C3HHeJ_G0035345.1 mouse_genomes_project X 36784031 37058666 + Gria3 protein_coding retained_intron MGP_C3HHeJ_T0095513.1 MGP_C3HHeJ_G0035345.1 mouse_genomes_project X 36784069 37060672 + MGP_C3HHeJ_P0095513 Gria3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095514.1 MGP_C3HHeJ_G0035345.1 mouse_genomes_project X 36784115 36997408 + Gria3 protein_coding retained_intron MGP_C3HHeJ_T0095515.1 MGP_C3HHeJ_G0035345.1 mouse_genomes_project X 36784198 37054575 + MGP_C3HHeJ_P0095515 Gria3 protein_coding protein_coding MGP_C3HHeJ_T0095516.1 MGP_C3HHeJ_G0035345.1 mouse_genomes_project X 36785373 36858161 + MGP_C3HHeJ_P0095516 Gria3 protein_coding protein_coding MGP_C3HHeJ_T0095517.1 MGP_C3HHeJ_G0035345.1 mouse_genomes_project X 36994050 37005116 + Gria3 protein_coding retained_intron MGP_C3HHeJ_T0016585.1 MGP_C3HHeJ_G0014689.1 mouse_genomes_project X 143446252 143446710 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095549.1 MGP_C3HHeJ_G0035349.1 mouse_genomes_project X 37867508 37869342 + MGP_C3HHeJ_P0095549 Gm43337 protein_coding protein_coding MGP_C3HHeJ_T0016393.1 MGP_C3HHeJ_G0014497.1 mouse_genomes_project X 103503696 103506881 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097672.1 MGP_C3HHeJ_G0035942.1 mouse_genomes_project X 165783550 165809413 - MGP_C3HHeJ_P0097672 Tlr7 protein_coding protein_coding MGP_C3HHeJ_T0097673.1 MGP_C3HHeJ_G0035942.1 mouse_genomes_project X 165783552 165809443 - MGP_C3HHeJ_P0097673 Tlr7 protein_coding protein_coding MGP_C3HHeJ_T0097674.1 MGP_C3HHeJ_G0035942.1 mouse_genomes_project X 165783835 165809382 - MGP_C3HHeJ_P0097674 Tlr7 protein_coding protein_coding MGP_C3HHeJ_T0097675.1 MGP_C3HHeJ_G0035942.1 mouse_genomes_project X 165786963 165809376 - MGP_C3HHeJ_P0097675 Tlr7 protein_coding protein_coding MGP_C3HHeJ_T0097676.1 MGP_C3HHeJ_G0035942.1 mouse_genomes_project X 165786977 165809395 - MGP_C3HHeJ_P0097676 Tlr7 protein_coding protein_coding MGP_C3HHeJ_T0097677.1 MGP_C3HHeJ_G0035942.1 mouse_genomes_project X 165796575 165809328 - Tlr7 protein_coding processed_transcript MGP_C3HHeJ_T0009317.1 MGP_C3HHeJ_G0007474.1 mouse_genomes_project X 100568329 100575436 - Xist lincRNA lincRNA MGP_C3HHeJ_T0009318.1 MGP_C3HHeJ_G0007474.1 mouse_genomes_project X 100569244 100592165 - Xist lincRNA lincRNA MGP_C3HHeJ_T0009319.1 MGP_C3HHeJ_G0007474.1 mouse_genomes_project X 100577582 100578534 - Xist lincRNA lincRNA MGP_C3HHeJ_T0009279.1 MGP_C3HHeJ_G0007445.1 mouse_genomes_project X 9824485 9856848 + Gm14505 lincRNA lincRNA MGP_C3HHeJ_T0095424.1 MGP_C3HHeJ_G0035307.1 mouse_genomes_project X 31636151 31637330 + MGP_C3HHeJ_P0095424 protein_coding protein_coding MGP_C3HHeJ_T0018463.1 MGP_C3HHeJ_G0015557.1 mouse_genomes_project X 168528871 168532933 - G530011O06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0096400.1 MGP_C3HHeJ_G0035587.1 mouse_genomes_project X 90945145 90978263 - MGP_C3HHeJ_P0096400 Eif2s3x protein_coding protein_coding MGP_C3HHeJ_T0096401.1 MGP_C3HHeJ_G0035587.1 mouse_genomes_project X 90964520 90978205 - MGP_C3HHeJ_P0096401 Eif2s3x protein_coding protein_coding MGP_C3HHeJ_T0096402.1 MGP_C3HHeJ_G0035587.1 mouse_genomes_project X 90967762 90978416 - Eif2s3x protein_coding processed_transcript MGP_C3HHeJ_T0102374.1 MGP_C3HHeJ_G0040337.1 mouse_genomes_project X 152313722 152314205 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0096177.1 MGP_C3HHeJ_G0035515.1 mouse_genomes_project X 70644794 70647750 - MGP_C3HHeJ_P0096177 Ubl4a protein_coding protein_coding MGP_C3HHeJ_T0096178.1 MGP_C3HHeJ_G0035515.1 mouse_genomes_project X 70644795 70647635 - Ubl4a protein_coding processed_transcript MGP_C3HHeJ_T0096179.1 MGP_C3HHeJ_G0035515.1 mouse_genomes_project X 70646348 70647543 - MGP_C3HHeJ_P0096179 Ubl4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096180.1 MGP_C3HHeJ_G0035515.1 mouse_genomes_project X 70646386 70647573 - Ubl4a protein_coding retained_intron MGP_C3HHeJ_T0096181.1 MGP_C3HHeJ_G0035515.1 mouse_genomes_project X 70646541 70652291 - MGP_C3HHeJ_P0096181 Ubl4a protein_coding protein_coding MGP_C3HHeJ_T0096182.1 MGP_C3HHeJ_G0035515.1 mouse_genomes_project X 70646819 70647590 - Ubl4a protein_coding retained_intron MGP_C3HHeJ_T0096183.1 MGP_C3HHeJ_G0035515.1 mouse_genomes_project X 70646873 70647580 - Ubl4a protein_coding processed_transcript MGP_C3HHeJ_T0102373.1 MGP_C3HHeJ_G0040336.1 mouse_genomes_project X 151167361 151168031 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016488.1 MGP_C3HHeJ_G0014592.1 mouse_genomes_project X 127675308 127676096 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016309.1 MGP_C3HHeJ_G0014413.1 mouse_genomes_project X 91092488 91093389 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016642.1 MGP_C3HHeJ_G0014746.1 mouse_genomes_project X 155915186 155915520 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011070.1 MGP_C3HHeJ_G0009203.1 mouse_genomes_project X 62848878 62848956 - Mir883b miRNA miRNA MGP_C3HHeJ_T0101309.1 MGP_C3HHeJ_G0039399.1 mouse_genomes_project X 104858854 104860073 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101310.1 MGP_C3HHeJ_G0039399.1 mouse_genomes_project X 104858863 104860018 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0005528.1 MGP_C3HHeJ_G0004651.1 mouse_genomes_project X 98738329 98744791 + antisense antisense MGP_C3HHeJ_T0005529.1 MGP_C3HHeJ_G0004651.1 mouse_genomes_project X 98739655 98741627 + antisense antisense MGP_C3HHeJ_T0096577.1 MGP_C3HHeJ_G0035633.1 mouse_genomes_project X 98170415 98174936 - MGP_C3HHeJ_P0096577 Il2rg protein_coding protein_coding MGP_C3HHeJ_T0096578.1 MGP_C3HHeJ_G0035633.1 mouse_genomes_project X 98170975 98174115 - MGP_C3HHeJ_P0096578 Il2rg protein_coding protein_coding MGP_C3HHeJ_T0096579.1 MGP_C3HHeJ_G0035633.1 mouse_genomes_project X 98173346 98174871 - Il2rg protein_coding retained_intron MGP_C3HHeJ_T0096580.1 MGP_C3HHeJ_G0035633.1 mouse_genomes_project X 98173876 98174839 - Il2rg protein_coding processed_transcript MGP_C3HHeJ_T0016052.1 MGP_C3HHeJ_G0014156.1 mouse_genomes_project X 31609573 31609867 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016333.1 MGP_C3HHeJ_G0014437.1 mouse_genomes_project X 94685907 94686634 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016292.1 MGP_C3HHeJ_G0014396.1 mouse_genomes_project X 88171027 88172174 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095327.1 MGP_C3HHeJ_G0035279.1 mouse_genomes_project X 15648698 15661083 + MGP_C3HHeJ_P0095327 Rgn protein_coding protein_coding MGP_C3HHeJ_T0016248.1 MGP_C3HHeJ_G0014352.1 mouse_genomes_project X 77264565 77264698 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016203.1 MGP_C3HHeJ_G0014307.1 mouse_genomes_project X 70266620 70267421 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095881.1 MGP_C3HHeJ_G0035461.1 mouse_genomes_project X 68153776 68157804 + MGP_C3HHeJ_P0095881 Prrg3 protein_coding protein_coding MGP_C3HHeJ_T0095882.1 MGP_C3HHeJ_G0035461.1 mouse_genomes_project X 68153777 68161249 + MGP_C3HHeJ_P0095882 Prrg3 protein_coding protein_coding MGP_C3HHeJ_T0095883.1 MGP_C3HHeJ_G0035461.1 mouse_genomes_project X 68154134 68163787 + MGP_C3HHeJ_P0095883 Prrg3 protein_coding protein_coding MGP_C3HHeJ_T0005492.1 MGP_C3HHeJ_G0004624.1 mouse_genomes_project X 2218463 2227081 + Ppp1r3fos antisense antisense MGP_C3HHeJ_T0005493.1 MGP_C3HHeJ_G0004624.1 mouse_genomes_project X 2219355 2224481 + Ppp1r3fos antisense antisense MGP_C3HHeJ_T0095446.1 MGP_C3HHeJ_G0035315.1 mouse_genomes_project X 32137759 32153594 - MGP_C3HHeJ_P0095446 Nkrf protein_coding protein_coding MGP_C3HHeJ_T0095806.1 MGP_C3HHeJ_G0035442.1 mouse_genomes_project X 63709720 63720874 - MGP_C3HHeJ_P0095806 protein_coding protein_coding MGP_C3HHeJ_T0096497.1 MGP_C3HHeJ_G0035611.1 mouse_genomes_project X 95851597 95919194 + MGP_C3HHeJ_P0096497 Stard8 protein_coding protein_coding MGP_C3HHeJ_T0096498.1 MGP_C3HHeJ_G0035611.1 mouse_genomes_project X 95893890 95928259 + MGP_C3HHeJ_P0096498 Stard8 protein_coding protein_coding MGP_C3HHeJ_T0096499.1 MGP_C3HHeJ_G0035611.1 mouse_genomes_project X 95895235 95919345 + Stard8 protein_coding processed_transcript MGP_C3HHeJ_T0096500.1 MGP_C3HHeJ_G0035611.1 mouse_genomes_project X 95922134 95923971 + Stard8 protein_coding processed_transcript MGP_C3HHeJ_T0101052.1 MGP_C3HHeJ_G0039246.1 mouse_genomes_project X 132593133 132593247 - snoRNA snoRNA MGP_C3HHeJ_T0018409.1 MGP_C3HHeJ_G0015540.1 mouse_genomes_project X 69299540 69308405 + processed_transcript processed_transcript MGP_C3HHeJ_T0095018.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2254016 2282093 + MGP_C3HHeJ_P0095018 Cacna1f protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095019.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2254031 2265033 + Cacna1f protein_coding retained_intron MGP_C3HHeJ_T0095020.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2254032 2282096 + MGP_C3HHeJ_P0095020 Cacna1f protein_coding protein_coding MGP_C3HHeJ_T0095021.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2254053 2266057 + MGP_C3HHeJ_P0095021 Cacna1f protein_coding protein_coding MGP_C3HHeJ_T0095022.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2254062 2282096 + MGP_C3HHeJ_P0095022 Cacna1f protein_coding protein_coding MGP_C3HHeJ_T0095023.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2254077 2282094 + Cacna1f protein_coding retained_intron MGP_C3HHeJ_T0095024.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2273129 2274841 + Cacna1f protein_coding retained_intron MGP_C3HHeJ_T0095025.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2274093 2277146 + MGP_C3HHeJ_P0095025 Cacna1f protein_coding protein_coding MGP_C3HHeJ_T0095026.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2274093 2277399 + MGP_C3HHeJ_P0095026 Cacna1f protein_coding protein_coding MGP_C3HHeJ_T0095027.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2275088 2276662 + Cacna1f protein_coding retained_intron MGP_C3HHeJ_T0095028.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2278175 2279889 + Cacna1f protein_coding retained_intron MGP_C3HHeJ_T0095778.1 MGP_C3HHeJ_G0035426.1 mouse_genomes_project X 55907902 55939458 + MGP_C3HHeJ_P0095778 F9 protein_coding protein_coding MGP_C3HHeJ_T0016430.1 MGP_C3HHeJ_G0014534.1 mouse_genomes_project X 110409841 110411606 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095329.1 MGP_C3HHeJ_G0035281.1 mouse_genomes_project X 15721509 15758962 + MGP_C3HHeJ_P0095329 Rbm10 protein_coding protein_coding MGP_C3HHeJ_T0095330.1 MGP_C3HHeJ_G0035281.1 mouse_genomes_project X 15721628 15758975 + MGP_C3HHeJ_P0095330 Rbm10 protein_coding protein_coding MGP_C3HHeJ_T0095331.1 MGP_C3HHeJ_G0035281.1 mouse_genomes_project X 15721789 15758975 + MGP_C3HHeJ_P0095331 Rbm10 protein_coding protein_coding MGP_C3HHeJ_T0095332.1 MGP_C3HHeJ_G0035281.1 mouse_genomes_project X 15721791 15756569 + Rbm10 protein_coding processed_transcript MGP_C3HHeJ_T0095333.1 MGP_C3HHeJ_G0035281.1 mouse_genomes_project X 15721919 15758969 + MGP_C3HHeJ_P0095333 Rbm10 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095334.1 MGP_C3HHeJ_G0035281.1 mouse_genomes_project X 15721939 15758969 + MGP_C3HHeJ_P0095334 Rbm10 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095335.1 MGP_C3HHeJ_G0035281.1 mouse_genomes_project X 15724104 15758758 + MGP_C3HHeJ_P0095335 Rbm10 protein_coding protein_coding MGP_C3HHeJ_T0095336.1 MGP_C3HHeJ_G0035281.1 mouse_genomes_project X 15724104 15758758 + MGP_C3HHeJ_P0095336 Rbm10 protein_coding protein_coding MGP_C3HHeJ_T0095337.1 MGP_C3HHeJ_G0035281.1 mouse_genomes_project X 15724104 15758758 + MGP_C3HHeJ_P0095337 Rbm10 protein_coding protein_coding MGP_C3HHeJ_T0016515.1 MGP_C3HHeJ_G0014619.1 mouse_genomes_project X 133798611 133799056 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016078.1 MGP_C3HHeJ_G0014182.1 mouse_genomes_project X 38282241 38282632 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099800.1 MGP_C3HHeJ_G0037994.1 mouse_genomes_project X 135900108 135900213 - Gm23958 snRNA snRNA MGP_C3HHeJ_T0016561.1 MGP_C3HHeJ_G0014665.1 mouse_genomes_project X 139635501 139635759 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099808.1 MGP_C3HHeJ_G0038002.1 mouse_genomes_project X 152001511 152001611 - Gm25895 snRNA snRNA MGP_C3HHeJ_T0016303.1 MGP_C3HHeJ_G0014407.1 mouse_genomes_project X 90672516 90672787 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096678.1 MGP_C3HHeJ_G0035654.1 mouse_genomes_project X 99747297 99754276 + MGP_C3HHeJ_P0096678 Dmrtc1c1 protein_coding protein_coding MGP_C3HHeJ_T0096679.1 MGP_C3HHeJ_G0035654.1 mouse_genomes_project X 99748557 99750251 + MGP_C3HHeJ_P0096679 Dmrtc1c1 protein_coding protein_coding MGP_C3HHeJ_T0095252.1 MGP_C3HHeJ_G0035255.1 mouse_genomes_project X 7580892 7600513 - MGP_C3HHeJ_P0095252 1810030O07Rik protein_coding protein_coding MGP_C3HHeJ_T0018459.1 MGP_C3HHeJ_G0015554.1 mouse_genomes_project X 151080909 151123694 + 9530051G07Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016649.1 MGP_C3HHeJ_G0014753.1 mouse_genomes_project X 157130655 157131540 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016669.1 MGP_C3HHeJ_G0014773.1 mouse_genomes_project X 161235466 161236152 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097596.1 MGP_C3HHeJ_G0035920.1 mouse_genomes_project X 162494382 162499790 - MGP_C3HHeJ_P0097596 protein_coding protein_coding MGP_C3HHeJ_T0097597.1 MGP_C3HHeJ_G0035920.1 mouse_genomes_project X 162494382 162499819 - MGP_C3HHeJ_P0097597 protein_coding protein_coding MGP_C3HHeJ_T0097598.1 MGP_C3HHeJ_G0035920.1 mouse_genomes_project X 162495555 162500162 - MGP_C3HHeJ_P0097598 protein_coding protein_coding MGP_C3HHeJ_T0097006.1 MGP_C3HHeJ_G0035766.1 mouse_genomes_project X 133031578 133047641 - MGP_C3HHeJ_P0097006 protein_coding protein_coding MGP_C3HHeJ_T0097007.1 MGP_C3HHeJ_G0035766.1 mouse_genomes_project X 133031578 133041688 - MGP_C3HHeJ_P0097007 protein_coding protein_coding MGP_C3HHeJ_T0016365.1 MGP_C3HHeJ_G0014469.1 mouse_genomes_project X 100598517 100598918 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095732.1 MGP_C3HHeJ_G0035414.1 mouse_genomes_project X 52721580 52822541 + MGP_C3HHeJ_P0095732 protein_coding protein_coding MGP_C3HHeJ_T0095733.1 MGP_C3HHeJ_G0035414.1 mouse_genomes_project X 52723861 52822573 + MGP_C3HHeJ_P0095733 protein_coding protein_coding MGP_C3HHeJ_T0095734.1 MGP_C3HHeJ_G0035414.1 mouse_genomes_project X 52738839 52844611 + MGP_C3HHeJ_P0095734 protein_coding protein_coding MGP_C3HHeJ_T0095735.1 MGP_C3HHeJ_G0035414.1 mouse_genomes_project X 52757151 52757682 + MGP_C3HHeJ_P0095735 protein_coding protein_coding MGP_C3HHeJ_T0095736.1 MGP_C3HHeJ_G0035414.1 mouse_genomes_project X 52806979 52822556 + MGP_C3HHeJ_P0095736 protein_coding protein_coding MGP_C3HHeJ_T0095737.1 MGP_C3HHeJ_G0035414.1 mouse_genomes_project X 52810465 52822563 + MGP_C3HHeJ_P0095737 protein_coding protein_coding MGP_C3HHeJ_T0016456.1 MGP_C3HHeJ_G0014560.1 mouse_genomes_project X 115035617 115037358 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101320.1 MGP_C3HHeJ_G0039407.1 mouse_genomes_project X 167897374 167899690 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0016666.1 MGP_C3HHeJ_G0014770.1 mouse_genomes_project X 161065091 161065546 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095541.1 MGP_C3HHeJ_G0035348.1 mouse_genomes_project X 37532615 37664991 + MGP_C3HHeJ_P0095541 Stag2 protein_coding protein_coding MGP_C3HHeJ_T0095542.1 MGP_C3HHeJ_G0035348.1 mouse_genomes_project X 37532707 37664981 + MGP_C3HHeJ_P0095542 Stag2 protein_coding protein_coding MGP_C3HHeJ_T0095543.1 MGP_C3HHeJ_G0035348.1 mouse_genomes_project X 37532836 37599656 + Stag2 protein_coding retained_intron MGP_C3HHeJ_T0095544.1 MGP_C3HHeJ_G0035348.1 mouse_genomes_project X 37532978 37593124 + MGP_C3HHeJ_P0095544 Stag2 protein_coding protein_coding MGP_C3HHeJ_T0095545.1 MGP_C3HHeJ_G0035348.1 mouse_genomes_project X 37533449 37598395 + Stag2 protein_coding processed_transcript MGP_C3HHeJ_T0095546.1 MGP_C3HHeJ_G0035348.1 mouse_genomes_project X 37534683 37664991 + MGP_C3HHeJ_P0095546 Stag2 protein_coding protein_coding MGP_C3HHeJ_T0095547.1 MGP_C3HHeJ_G0035348.1 mouse_genomes_project X 37534996 37593127 + MGP_C3HHeJ_P0095547 Stag2 protein_coding protein_coding MGP_C3HHeJ_T0095548.1 MGP_C3HHeJ_G0035348.1 mouse_genomes_project X 37536162 37608005 + MGP_C3HHeJ_P0095548 Stag2 protein_coding protein_coding MGP_C3HHeJ_T0005514.1 MGP_C3HHeJ_G0004639.1 mouse_genomes_project X 65412334 65417008 - Gm14705 antisense antisense MGP_C3HHeJ_T0005515.1 MGP_C3HHeJ_G0004639.1 mouse_genomes_project X 65413696 65416080 - Gm14705 antisense antisense MGP_C3HHeJ_T0005542.1 MGP_C3HHeJ_G0004659.1 mouse_genomes_project X 158820628 158832517 - Gm15241 antisense antisense MGP_C3HHeJ_T0098255.1 MGP_C3HHeJ_G0036467.1 mouse_genomes_project X 78475743 78475962 + Gm26174 ribozyme ribozyme MGP_C3HHeJ_T0101034.1 MGP_C3HHeJ_G0039228.1 mouse_genomes_project X 74858655 74858789 - Gm22843 snoRNA snoRNA MGP_C3HHeJ_T0095563.1 MGP_C3HHeJ_G0035352.1 mouse_genomes_project X 38984774 38987147 + MGP_C3HHeJ_P0095563 Gm362 protein_coding protein_coding MGP_C3HHeJ_T0016391.1 MGP_C3HHeJ_G0014495.1 mouse_genomes_project X 102942408 102942795 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011035.1 MGP_C3HHeJ_G0009168.1 mouse_genomes_project X 15937306 15937384 - Gm24824 miRNA miRNA MGP_C3HHeJ_T0009284.1 MGP_C3HHeJ_G0007448.1 mouse_genomes_project X 16331265 16349212 - 4930453H23Rik lincRNA lincRNA MGP_C3HHeJ_T0009285.1 MGP_C3HHeJ_G0007448.1 mouse_genomes_project X 16331742 16332000 - 4930453H23Rik lincRNA lincRNA MGP_C3HHeJ_T0009286.1 MGP_C3HHeJ_G0007448.1 mouse_genomes_project X 16345956 16349111 - 4930453H23Rik lincRNA lincRNA MGP_C3HHeJ_T0011120.1 MGP_C3HHeJ_G0009253.1 mouse_genomes_project X 137862476 137862541 + Mir3475 miRNA miRNA MGP_C3HHeJ_T0101313.1 MGP_C3HHeJ_G0039402.1 mouse_genomes_project X 134250593 134250915 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0096683.1 MGP_C3HHeJ_G0035656.1 mouse_genomes_project X 99957358 99961015 - MGP_C3HHeJ_P0096683 Dmrtc1a protein_coding protein_coding MGP_C3HHeJ_T0096684.1 MGP_C3HHeJ_G0035656.1 mouse_genomes_project X 99957364 99960704 - MGP_C3HHeJ_P0096684 Dmrtc1a protein_coding protein_coding MGP_C3HHeJ_T0096685.1 MGP_C3HHeJ_G0035656.1 mouse_genomes_project X 99957364 99960615 - MGP_C3HHeJ_P0096685 Dmrtc1a protein_coding protein_coding MGP_C3HHeJ_T0096686.1 MGP_C3HHeJ_G0035656.1 mouse_genomes_project X 99957954 99962512 - MGP_C3HHeJ_P0096686 Dmrtc1a protein_coding protein_coding MGP_C3HHeJ_T0016662.1 MGP_C3HHeJ_G0014766.1 mouse_genomes_project X 159612015 159612619 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011080.1 MGP_C3HHeJ_G0009213.1 mouse_genomes_project X 62906592 62906674 - Mir465b-2 miRNA miRNA MGP_C3HHeJ_T0016065.1 MGP_C3HHeJ_G0014169.1 mouse_genomes_project X 35382362 35382791 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016352.1 MGP_C3HHeJ_G0014456.1 mouse_genomes_project X 99139599 99140063 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011084.1 MGP_C3HHeJ_G0009217.1 mouse_genomes_project X 64053020 64053095 - Mir509 miRNA miRNA MGP_C3HHeJ_T0097451.1 MGP_C3HHeJ_G0035887.1 mouse_genomes_project X 155789207 155822734 - Mbtps2 protein_coding processed_transcript MGP_C3HHeJ_T0097452.1 MGP_C3HHeJ_G0035887.1 mouse_genomes_project X 155801842 155852234 - MGP_C3HHeJ_P0097452 Mbtps2 protein_coding protein_coding MGP_C3HHeJ_T0097453.1 MGP_C3HHeJ_G0035887.1 mouse_genomes_project X 155819674 155852169 - MGP_C3HHeJ_P0097453 Mbtps2 protein_coding protein_coding MGP_C3HHeJ_T0097454.1 MGP_C3HHeJ_G0035887.1 mouse_genomes_project X 155819675 155852169 - MGP_C3HHeJ_P0097454 Mbtps2 protein_coding protein_coding MGP_C3HHeJ_T0097456.1 MGP_C3HHeJ_G0035887.1 mouse_genomes_project X 155822794 155833547 - Mbtps2 protein_coding processed_transcript MGP_C3HHeJ_T0097457.1 MGP_C3HHeJ_G0035887.1 mouse_genomes_project X 155824889 155852170 - Mbtps2 protein_coding retained_intron MGP_C3HHeJ_T0097458.1 MGP_C3HHeJ_G0035887.1 mouse_genomes_project X 155826618 155852198 - MGP_C3HHeJ_P0097458 Mbtps2 protein_coding protein_coding MGP_C3HHeJ_T0099755.1 MGP_C3HHeJ_G0037949.1 mouse_genomes_project X 32313663 32313772 - Gm26099 snRNA snRNA MGP_C3HHeJ_T0009342.1 MGP_C3HHeJ_G0007486.1 mouse_genomes_project X 138354851 138374738 + Eif2c5 lincRNA lincRNA MGP_C3HHeJ_T0102344.1 MGP_C3HHeJ_G0040307.1 mouse_genomes_project X 51653387 51662564 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016565.1 MGP_C3HHeJ_G0014669.1 mouse_genomes_project X 140022847 140023060 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016141.1 MGP_C3HHeJ_G0014245.1 mouse_genomes_project X 55953544 55954663 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016440.1 MGP_C3HHeJ_G0014544.1 mouse_genomes_project X 112586771 112587401 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011048.1 MGP_C3HHeJ_G0009181.1 mouse_genomes_project X 48219464 48219539 - Mir363 miRNA miRNA MGP_C3HHeJ_T0016545.1 MGP_C3HHeJ_G0014649.1 mouse_genomes_project X 138003327 138004156 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016383.1 MGP_C3HHeJ_G0014487.1 mouse_genomes_project X 102236063 102236844 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096279.1 MGP_C3HHeJ_G0035540.1 mouse_genomes_project X 71863132 71872904 + MGP_C3HHeJ_P0096279 Vbp1 protein_coding protein_coding MGP_C3HHeJ_T0096280.1 MGP_C3HHeJ_G0035540.1 mouse_genomes_project X 71863132 71883785 + MGP_C3HHeJ_P0096280 Vbp1 protein_coding protein_coding MGP_C3HHeJ_T0096281.1 MGP_C3HHeJ_G0035540.1 mouse_genomes_project X 71863150 71870612 + Vbp1 protein_coding retained_intron MGP_C3HHeJ_T0016439.1 MGP_C3HHeJ_G0014543.1 mouse_genomes_project X 112421542 112424491 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096316.1 MGP_C3HHeJ_G0035557.1 mouse_genomes_project X 75026237 75027876 + MGP_C3HHeJ_P0096316 Fam47c protein_coding protein_coding MGP_C3HHeJ_T0096959.1 MGP_C3HHeJ_G0035749.1 mouse_genomes_project X 131865726 131871535 + MGP_C3HHeJ_P0096959 protein_coding protein_coding MGP_C3HHeJ_T0096426.1 MGP_C3HHeJ_G0035593.1 mouse_genomes_project X 91851340 91856152 - MGP_C3HHeJ_P0096426 Spin4 protein_coding protein_coding MGP_C3HHeJ_T0016032.1 MGP_C3HHeJ_G0014136.1 mouse_genomes_project X 15460677 15461749 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016539.1 MGP_C3HHeJ_G0014643.1 mouse_genomes_project X 136875532 136876206 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096868.1 MGP_C3HHeJ_G0035720.1 mouse_genomes_project X 115590162 115591223 + MGP_C3HHeJ_P0096868 protein_coding protein_coding MGP_C3HHeJ_T0016287.1 MGP_C3HHeJ_G0014391.1 mouse_genomes_project X 87835246 87838123 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016146.1 MGP_C3HHeJ_G0014250.1 mouse_genomes_project X 56630282 56631076 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095981.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70108638 70125321 - MGP_C3HHeJ_P0095981 L1cam protein_coding protein_coding MGP_C3HHeJ_T0095982.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70108815 70136617 - MGP_C3HHeJ_P0095982 L1cam protein_coding protein_coding MGP_C3HHeJ_T0095983.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70109524 70125220 - MGP_C3HHeJ_P0095983 L1cam protein_coding protein_coding MGP_C3HHeJ_T0095984.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70109751 70111247 - L1cam protein_coding retained_intron MGP_C3HHeJ_T0095985.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70109857 70111615 - MGP_C3HHeJ_P0095985 L1cam protein_coding protein_coding MGP_C3HHeJ_T0095986.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70111277 70112517 - L1cam protein_coding retained_intron MGP_C3HHeJ_T0095987.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70111531 70112267 - L1cam protein_coding retained_intron MGP_C3HHeJ_T0095988.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70112334 70113486 - L1cam protein_coding retained_intron MGP_C3HHeJ_T0095989.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70113925 70115008 - L1cam protein_coding retained_intron MGP_C3HHeJ_T0095990.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70114278 70115976 - MGP_C3HHeJ_P0095990 L1cam protein_coding protein_coding MGP_C3HHeJ_T0095991.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70118565 70136578 - L1cam protein_coding retained_intron MGP_C3HHeJ_T0095992.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70121102 70152050 - L1cam protein_coding processed_transcript MGP_C3HHeJ_T0095993.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70121179 70125698 - MGP_C3HHeJ_P0095993 L1cam protein_coding protein_coding MGP_C3HHeJ_T0097033.1 MGP_C3HHeJ_G0035775.1 mouse_genomes_project X 133570044 133570655 - MGP_C3HHeJ_P0097033 Bex1 protein_coding protein_coding MGP_C3HHeJ_T0097034.1 MGP_C3HHeJ_G0035775.1 mouse_genomes_project X 133570615 133571034 - Bex1 protein_coding retained_intron MGP_C3HHeJ_T0095203.1 MGP_C3HHeJ_G0035237.1 mouse_genomes_project X 3936828 3937486 + MGP_C3HHeJ_P0095203 protein_coding protein_coding MGP_C3HHeJ_T0101069.1 MGP_C3HHeJ_G0039263.1 mouse_genomes_project X 161137455 161137574 + Gm23786 snoRNA snoRNA MGP_C3HHeJ_T0016546.1 MGP_C3HHeJ_G0014650.1 mouse_genomes_project X 138194383 138194837 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096694.1 MGP_C3HHeJ_G0035664.1 mouse_genomes_project X 100831006 100957231 - MGP_C3HHeJ_P0096694 Slc16a2 protein_coding protein_coding MGP_C3HHeJ_T0096695.1 MGP_C3HHeJ_G0035664.1 mouse_genomes_project X 100833460 100840064 - Slc16a2 protein_coding retained_intron MGP_C3HHeJ_T0096696.1 MGP_C3HHeJ_G0035664.1 mouse_genomes_project X 100839993 100869329 - Slc16a2 protein_coding processed_transcript MGP_C3HHeJ_T0016221.1 MGP_C3HHeJ_G0014325.1 mouse_genomes_project X 72738987 72739291 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009331.1 MGP_C3HHeJ_G0007478.1 mouse_genomes_project X 102554453 102611562 - 5330434G04Rik lincRNA lincRNA MGP_C3HHeJ_T0009332.1 MGP_C3HHeJ_G0007478.1 mouse_genomes_project X 102556531 102611562 - 5330434G04Rik lincRNA lincRNA MGP_C3HHeJ_T0009333.1 MGP_C3HHeJ_G0007478.1 mouse_genomes_project X 102586198 102611540 - 5330434G04Rik lincRNA lincRNA MGP_C3HHeJ_T0009334.1 MGP_C3HHeJ_G0007478.1 mouse_genomes_project X 102588866 102607700 - 5330434G04Rik lincRNA lincRNA MGP_C3HHeJ_T0095391.1 MGP_C3HHeJ_G0035294.1 mouse_genomes_project X 16231117 16236490 + MGP_C3HHeJ_P0095391 Ssxa1 protein_coding protein_coding MGP_C3HHeJ_T0095392.1 MGP_C3HHeJ_G0035294.1 mouse_genomes_project X 16233669 16236490 + MGP_C3HHeJ_P0095392 Ssxa1 protein_coding protein_coding MGP_C3HHeJ_T0095701.1 MGP_C3HHeJ_G0035403.1 mouse_genomes_project X 49326671 49329018 - MGP_C3HHeJ_P0095701 Zfp36l3 protein_coding protein_coding MGP_C3HHeJ_T0016340.1 MGP_C3HHeJ_G0014444.1 mouse_genomes_project X 96678129 96679322 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011121.1 MGP_C3HHeJ_G0009254.1 mouse_genomes_project X 140356094 140356192 + Mir652 miRNA miRNA MGP_C3HHeJ_T0016409.1 MGP_C3HHeJ_G0014513.1 mouse_genomes_project X 106302450 106303262 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009287.1 MGP_C3HHeJ_G0007449.1 mouse_genomes_project X 16435116 16464271 - Gm6938 lincRNA lincRNA MGP_C3HHeJ_T0101030.1 MGP_C3HHeJ_G0039224.1 mouse_genomes_project X 70915897 70916032 + Gm26417 snoRNA snoRNA MGP_C3HHeJ_T0011685.1 MGP_C3HHeJ_G0009818.1 mouse_genomes_project X 138213605 138213907 - Gm22025 misc_RNA misc_RNA MGP_C3HHeJ_T0016342.1 MGP_C3HHeJ_G0014446.1 mouse_genomes_project X 97214170 97215308 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099757.1 MGP_C3HHeJ_G0037951.1 mouse_genomes_project X 38644371 38644561 + Gm24763 snRNA snRNA MGP_C3HHeJ_T0102369.1 MGP_C3HHeJ_G0040332.1 mouse_genomes_project X 134609750 134610584 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009343.1 MGP_C3HHeJ_G0007487.1 mouse_genomes_project X 141788397 141800975 + lincRNA lincRNA MGP_C3HHeJ_T0096808.1 MGP_C3HHeJ_G0035697.1 mouse_genomes_project X 106305501 106314341 - MGP_C3HHeJ_P0096808 Hmgn5 protein_coding protein_coding MGP_C3HHeJ_T0097043.1 MGP_C3HHeJ_G0035781.1 mouse_genomes_project X 134155847 134159344 + MGP_C3HHeJ_P0097043 Tceal1 protein_coding protein_coding MGP_C3HHeJ_T0009290.1 MGP_C3HHeJ_G0007452.1 mouse_genomes_project X 33808907 33815058 + Gm7598 lincRNA lincRNA MGP_C3HHeJ_T0096521.1 MGP_C3HHeJ_G0035616.1 mouse_genomes_project X 97290158 97299902 - MGP_C3HHeJ_P0096521 Awat2 protein_coding protein_coding MGP_C3HHeJ_T0011135.1 MGP_C3HHeJ_G0009268.1 mouse_genomes_project X 161266537 161266615 - Mir3473a miRNA miRNA MGP_C3HHeJ_T0099785.1 MGP_C3HHeJ_G0037979.1 mouse_genomes_project X 103029271 103029454 + Gm26020 snRNA snRNA MGP_C3HHeJ_T0096925.1 MGP_C3HHeJ_G0035740.1 mouse_genomes_project X 131423280 131443221 + MGP_C3HHeJ_P0096925 Arl13a protein_coding protein_coding MGP_C3HHeJ_T0016571.1 MGP_C3HHeJ_G0014675.1 mouse_genomes_project X 141778384 141784174 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016416.1 MGP_C3HHeJ_G0014520.1 mouse_genomes_project X 109012893 109013538 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097060.1 MGP_C3HHeJ_G0035788.1 mouse_genomes_project X 134448215 134466979 - MGP_C3HHeJ_P0097060 protein_coding protein_coding MGP_C3HHeJ_T0097664.1 MGP_C3HHeJ_G0035940.1 mouse_genomes_project X 165678485 165680707 - MGP_C3HHeJ_P0097664 Tmsb4x protein_coding protein_coding MGP_C3HHeJ_T0097665.1 MGP_C3HHeJ_G0035940.1 mouse_genomes_project X 165678487 165680541 - MGP_C3HHeJ_P0097665 Tmsb4x protein_coding protein_coding MGP_C3HHeJ_T0097666.1 MGP_C3HHeJ_G0035940.1 mouse_genomes_project X 165678684 165680219 - MGP_C3HHeJ_P0097666 Tmsb4x protein_coding protein_coding MGP_C3HHeJ_T0009300.1 MGP_C3HHeJ_G0007459.1 mouse_genomes_project X 58502508 58508053 - 1700019B21Rik lincRNA lincRNA MGP_C3HHeJ_T0009301.1 MGP_C3HHeJ_G0007459.1 mouse_genomes_project X 58502508 58520272 - 1700019B21Rik lincRNA lincRNA MGP_C3HHeJ_T0016048.1 MGP_C3HHeJ_G0014152.1 mouse_genomes_project X 30990323 30991556 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099767.1 MGP_C3HHeJ_G0037961.1 mouse_genomes_project X 56169925 56170032 + Gm22287 snRNA snRNA MGP_C3HHeJ_T0016010.1 MGP_C3HHeJ_G0014114.1 mouse_genomes_project X 9267836 9268702 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101023.1 MGP_C3HHeJ_G0039217.1 mouse_genomes_project X 63631905 63632014 - Gm26276 snoRNA snoRNA MGP_C3HHeJ_T0099798.1 MGP_C3HHeJ_G0037992.1 mouse_genomes_project X 131753940 131754047 + Gm23124 snRNA snRNA MGP_C3HHeJ_T0097536.1 MGP_C3HHeJ_G0035904.1 mouse_genomes_project X 159237993 159242930 - MGP_C3HHeJ_P0097536 Gja6 protein_coding protein_coding MGP_C3HHeJ_T0016195.1 MGP_C3HHeJ_G0014299.1 mouse_genomes_project X 66730174 66730550 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095779.1 MGP_C3HHeJ_G0035427.1 mouse_genomes_project X 55964382 56088643 - MGP_C3HHeJ_P0095779 Mcf2 protein_coding protein_coding MGP_C3HHeJ_T0095780.1 MGP_C3HHeJ_G0035427.1 mouse_genomes_project X 55964382 56057724 - MGP_C3HHeJ_P0095780 Mcf2 protein_coding protein_coding MGP_C3HHeJ_T0095781.1 MGP_C3HHeJ_G0035427.1 mouse_genomes_project X 55964385 56057667 - MGP_C3HHeJ_P0095781 Mcf2 protein_coding protein_coding MGP_C3HHeJ_T0016064.1 MGP_C3HHeJ_G0014168.1 mouse_genomes_project X 35169177 35169747 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095029.1 MGP_C3HHeJ_G0035197.1 mouse_genomes_project X 2285370 2300049 + MGP_C3HHeJ_P0095029 Syp protein_coding protein_coding MGP_C3HHeJ_T0095030.1 MGP_C3HHeJ_G0035197.1 mouse_genomes_project X 2285537 2294171 + Syp protein_coding retained_intron MGP_C3HHeJ_T0095031.1 MGP_C3HHeJ_G0035197.1 mouse_genomes_project X 2285621 2291096 + MGP_C3HHeJ_P0095031 Syp protein_coding protein_coding MGP_C3HHeJ_T0095032.1 MGP_C3HHeJ_G0035197.1 mouse_genomes_project X 2286204 2291085 + Syp protein_coding processed_transcript MGP_C3HHeJ_T0095033.1 MGP_C3HHeJ_G0035197.1 mouse_genomes_project X 2286660 2291044 + Syp protein_coding retained_intron MGP_C3HHeJ_T0095034.1 MGP_C3HHeJ_G0035197.1 mouse_genomes_project X 2290710 2291835 + Syp protein_coding retained_intron MGP_C3HHeJ_T0096803.1 MGP_C3HHeJ_G0035696.1 mouse_genomes_project X 106027303 106135979 - MGP_C3HHeJ_P0096803 Brwd3 protein_coding protein_coding MGP_C3HHeJ_T0096804.1 MGP_C3HHeJ_G0035696.1 mouse_genomes_project X 106032854 106136003 - MGP_C3HHeJ_P0096804 Brwd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096805.1 MGP_C3HHeJ_G0035696.1 mouse_genomes_project X 106032854 106136003 - MGP_C3HHeJ_P0096805 Brwd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096806.1 MGP_C3HHeJ_G0035696.1 mouse_genomes_project X 106102131 106135971 - Brwd3 protein_coding retained_intron MGP_C3HHeJ_T0096807.1 MGP_C3HHeJ_G0035696.1 mouse_genomes_project X 106122459 106135977 - MGP_C3HHeJ_P0096807 Brwd3 protein_coding protein_coding MGP_C3HHeJ_T0097537.1 MGP_C3HHeJ_G0035905.1 mouse_genomes_project X 159458807 159599714 + MGP_C3HHeJ_P0097537 Scml2 protein_coding protein_coding MGP_C3HHeJ_T0097538.1 MGP_C3HHeJ_G0035905.1 mouse_genomes_project X 159478617 159599700 + MGP_C3HHeJ_P0097538 Scml2 protein_coding protein_coding MGP_C3HHeJ_T0097539.1 MGP_C3HHeJ_G0035905.1 mouse_genomes_project X 159503988 159599766 + MGP_C3HHeJ_P0097539 Scml2 protein_coding protein_coding MGP_C3HHeJ_T0097540.1 MGP_C3HHeJ_G0035905.1 mouse_genomes_project X 159504010 159601010 + MGP_C3HHeJ_P0097540 Scml2 protein_coding protein_coding MGP_C3HHeJ_T0097541.1 MGP_C3HHeJ_G0035905.1 mouse_genomes_project X 159504010 159601027 + MGP_C3HHeJ_P0097541 Scml2 protein_coding protein_coding MGP_C3HHeJ_T0097542.1 MGP_C3HHeJ_G0035905.1 mouse_genomes_project X 159504298 159597608 + MGP_C3HHeJ_P0097542 Scml2 protein_coding protein_coding MGP_C3HHeJ_T0097543.1 MGP_C3HHeJ_G0035905.1 mouse_genomes_project X 159573730 159579022 + Scml2 protein_coding processed_transcript MGP_C3HHeJ_T0015968.1 MGP_C3HHeJ_G0014072.1 mouse_genomes_project X 2192078 2192373 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097700.1 MGP_C3HHeJ_G0035948.1 mouse_genomes_project X 167781907 167849050 - MGP_C3HHeJ_P0097700 Hccs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097701.1 MGP_C3HHeJ_G0035948.1 mouse_genomes_project X 167840207 167848958 - MGP_C3HHeJ_P0097701 Hccs protein_coding protein_coding MGP_C3HHeJ_T0097702.1 MGP_C3HHeJ_G0035948.1 mouse_genomes_project X 167840207 167848972 - MGP_C3HHeJ_P0097702 Hccs protein_coding protein_coding MGP_C3HHeJ_T0016056.1 MGP_C3HHeJ_G0014160.1 mouse_genomes_project X 33729529 33730201 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016553.1 MGP_C3HHeJ_G0014657.1 mouse_genomes_project X 139279114 139279414 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096691.1 MGP_C3HHeJ_G0035661.1 mouse_genomes_project X 100521546 100532219 + MGP_C3HHeJ_P0096691 Tsx protein_coding protein_coding MGP_C3HHeJ_T0016263.1 MGP_C3HHeJ_G0014367.1 mouse_genomes_project X 82198914 82199173 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016163.1 MGP_C3HHeJ_G0014267.1 mouse_genomes_project X 58877027 58877249 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016454.1 MGP_C3HHeJ_G0014558.1 mouse_genomes_project X 115033951 115034396 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011082.1 MGP_C3HHeJ_G0009215.1 mouse_genomes_project X 64031031 64031097 - Mir201 miRNA miRNA MGP_C3HHeJ_T0096842.1 MGP_C3HHeJ_G0035710.1 mouse_genomes_project X 109685541 109743814 + MGP_C3HHeJ_P0096842 2010106E10Rik protein_coding protein_coding MGP_C3HHeJ_T0096843.1 MGP_C3HHeJ_G0035710.1 mouse_genomes_project X 109685541 109743824 + MGP_C3HHeJ_P0096843 2010106E10Rik protein_coding protein_coding MGP_C3HHeJ_T0101495.1 MGP_C3HHeJ_G0039487.1 mouse_genomes_project X 148739760 148785114 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101496.1 MGP_C3HHeJ_G0039487.1 mouse_genomes_project X 148778139 148780363 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101497.1 MGP_C3HHeJ_G0039487.1 mouse_genomes_project X 148781752 148785227 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0096788.1 MGP_C3HHeJ_G0035690.1 mouse_genomes_project X 104707332 104714360 - MGP_C3HHeJ_P0096788 Itm2a protein_coding protein_coding MGP_C3HHeJ_T0016486.1 MGP_C3HHeJ_G0014590.1 mouse_genomes_project X 127548459 127549719 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095196.1 MGP_C3HHeJ_G0035230.1 mouse_genomes_project X 3068917 3402251 + MGP_C3HHeJ_P0095196 protein_coding protein_coding MGP_C3HHeJ_T0016225.1 MGP_C3HHeJ_G0014329.1 mouse_genomes_project X 73318494 73318933 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002447.1 MGP_C3HHeJ_G0002365.1 mouse_genomes_project X 150276182 150277659 - TEC TEC MGP_C3HHeJ_T0095930.1 MGP_C3HHeJ_G0035483.1 mouse_genomes_project X 69738190 69807030 + MGP_C3HHeJ_P0095930 Atp2b3 protein_coding protein_coding MGP_C3HHeJ_T0095931.1 MGP_C3HHeJ_G0035483.1 mouse_genomes_project X 69738190 69794237 + MGP_C3HHeJ_P0095931 Atp2b3 protein_coding protein_coding MGP_C3HHeJ_T0095932.1 MGP_C3HHeJ_G0035483.1 mouse_genomes_project X 69738190 69807030 + MGP_C3HHeJ_P0095932 Atp2b3 protein_coding protein_coding MGP_C3HHeJ_T0101021.1 MGP_C3HHeJ_G0039215.1 mouse_genomes_project X 47297986 47298103 + Gm22539 snoRNA snoRNA MGP_C3HHeJ_T0016491.1 MGP_C3HHeJ_G0014595.1 mouse_genomes_project X 128345077 128346387 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097720.1 MGP_C3HHeJ_G0035951.1 mouse_genomes_project X 168532391 168532700 - MGP_C3HHeJ_P0097720 Gm21860 protein_coding protein_coding MGP_C3HHeJ_T0098303.1 MGP_C3HHeJ_G0036515.1 mouse_genomes_project X 31046637 31046912 + Gm25624 scaRNA scaRNA MGP_C3HHeJ_T0096272.1 MGP_C3HHeJ_G0035539.1 mouse_genomes_project X 71760061 71803717 + MGP_C3HHeJ_P0096272 Brcc3 protein_coding protein_coding MGP_C3HHeJ_T0096273.1 MGP_C3HHeJ_G0035539.1 mouse_genomes_project X 71760130 71801734 + MGP_C3HHeJ_P0096273 Brcc3 protein_coding protein_coding MGP_C3HHeJ_T0096274.1 MGP_C3HHeJ_G0035539.1 mouse_genomes_project X 71760133 71800481 + Brcc3 protein_coding retained_intron MGP_C3HHeJ_T0096275.1 MGP_C3HHeJ_G0035539.1 mouse_genomes_project X 71760143 71801457 + MGP_C3HHeJ_P0096275 Brcc3 protein_coding protein_coding MGP_C3HHeJ_T0096276.1 MGP_C3HHeJ_G0035539.1 mouse_genomes_project X 71760149 71786437 + MGP_C3HHeJ_P0096276 Brcc3 protein_coding protein_coding MGP_C3HHeJ_T0096277.1 MGP_C3HHeJ_G0035539.1 mouse_genomes_project X 71760740 71783921 + MGP_C3HHeJ_P0096277 Brcc3 protein_coding protein_coding MGP_C3HHeJ_T0096278.1 MGP_C3HHeJ_G0035539.1 mouse_genomes_project X 71782423 71800973 + Brcc3 protein_coding retained_intron MGP_C3HHeJ_T0096372.1 MGP_C3HHeJ_G0035577.1 mouse_genomes_project X 88621349 88622384 - MGP_C3HHeJ_P0096372 protein_coding protein_coding MGP_C3HHeJ_T0011074.1 MGP_C3HHeJ_G0009207.1 mouse_genomes_project X 62863545 62863623 - Mir880 miRNA miRNA MGP_C3HHeJ_T0016552.1 MGP_C3HHeJ_G0014656.1 mouse_genomes_project X 139224027 139224537 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016412.1 MGP_C3HHeJ_G0014516.1 mouse_genomes_project X 107704298 107706704 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096265.1 MGP_C3HHeJ_G0035537.1 mouse_genomes_project X 71748279 71759999 - MGP_C3HHeJ_P0096265 Cmc4 protein_coding protein_coding MGP_C3HHeJ_T0096266.1 MGP_C3HHeJ_G0035537.1 mouse_genomes_project X 71748459 71760018 - MGP_C3HHeJ_P0096266 Cmc4 protein_coding protein_coding MGP_C3HHeJ_T0096267.1 MGP_C3HHeJ_G0035537.1 mouse_genomes_project X 71748503 71753348 - MGP_C3HHeJ_P0096267 Cmc4 protein_coding protein_coding MGP_C3HHeJ_T0016517.1 MGP_C3HHeJ_G0014621.1 mouse_genomes_project X 133931329 133932409 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097003.1 MGP_C3HHeJ_G0035764.1 mouse_genomes_project X 132923573 132937684 - MGP_C3HHeJ_P0097003 Prame protein_coding protein_coding MGP_C3HHeJ_T0097004.1 MGP_C3HHeJ_G0035764.1 mouse_genomes_project X 132923715 132926377 - MGP_C3HHeJ_P0097004 Prame protein_coding protein_coding MGP_C3HHeJ_T0016682.1 MGP_C3HHeJ_G0014786.1 mouse_genomes_project X 164504443 164506376 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099748.1 MGP_C3HHeJ_G0037942.1 mouse_genomes_project X 14814757 14814864 - Gm23678 snRNA snRNA MGP_C3HHeJ_T0018460.1 MGP_C3HHeJ_G0015555.1 mouse_genomes_project X 161123965 161125501 - Gm15201 processed_transcript processed_transcript MGP_C3HHeJ_T0097636.1 MGP_C3HHeJ_G0035931.1 mouse_genomes_project X 163443969 163445028 - MGP_C3HHeJ_P0097636 Gm17604 protein_coding protein_coding MGP_C3HHeJ_T0016069.1 MGP_C3HHeJ_G0014173.1 mouse_genomes_project X 36082103 36082382 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011108.1 MGP_C3HHeJ_G0009241.1 mouse_genomes_project X 101270577 101270677 - Mir672 miRNA miRNA MGP_C3HHeJ_T0016250.1 MGP_C3HHeJ_G0014354.1 mouse_genomes_project X 78687813 78688099 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096373.1 MGP_C3HHeJ_G0035578.1 mouse_genomes_project X 88714137 88715044 - MGP_C3HHeJ_P0096373 Mageb2 protein_coding protein_coding MGP_C3HHeJ_T0099803.1 MGP_C3HHeJ_G0037997.1 mouse_genomes_project X 143360694 143360792 - Gm27659 snRNA snRNA MGP_C3HHeJ_T0095730.1 MGP_C3HHeJ_G0035413.1 mouse_genomes_project X 52640469 52665120 - MGP_C3HHeJ_P0095730 Mtap7d3 protein_coding protein_coding MGP_C3HHeJ_T0095731.1 MGP_C3HHeJ_G0035413.1 mouse_genomes_project X 52652473 52665108 - MGP_C3HHeJ_P0095731 Mtap7d3 protein_coding protein_coding MGP_C3HHeJ_T0016495.1 MGP_C3HHeJ_G0014599.1 mouse_genomes_project X 129385573 129386516 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011049.1 MGP_C3HHeJ_G0009182.1 mouse_genomes_project X 48219609 48219700 - Mir92-2 miRNA miRNA MGP_C3HHeJ_T0016289.1 MGP_C3HHeJ_G0014393.1 mouse_genomes_project X 87859361 87865564 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016075.1 MGP_C3HHeJ_G0014179.1 mouse_genomes_project X 37297622 37298195 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0094995.1 MGP_C3HHeJ_G0035189.1 mouse_genomes_project X 1592619 1643711 - MGP_C3HHeJ_P0094995 Ccnb3 protein_coding protein_coding MGP_C3HHeJ_T0094996.1 MGP_C3HHeJ_G0035189.1 mouse_genomes_project X 1592619 1655789 - MGP_C3HHeJ_P0094996 Ccnb3 protein_coding protein_coding MGP_C3HHeJ_T0096368.1 MGP_C3HHeJ_G0035573.1 mouse_genomes_project X 86459222 86461977 - MGP_C3HHeJ_P0096368 4930415L06Rik protein_coding protein_coding MGP_C3HHeJ_T0016462.1 MGP_C3HHeJ_G0014566.1 mouse_genomes_project X 117239364 117240194 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016407.1 MGP_C3HHeJ_G0014511.1 mouse_genomes_project X 105699120 105700446 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096120.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70555482 70556486 + Taz protein_coding processed_transcript MGP_C3HHeJ_T0096121.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70555482 70556436 + Taz protein_coding processed_transcript MGP_C3HHeJ_T0096122.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556267 70563722 + MGP_C3HHeJ_P0096122 Taz protein_coding protein_coding MGP_C3HHeJ_T0096123.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556320 70559458 + Taz protein_coding retained_intron MGP_C3HHeJ_T0096124.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556320 70561606 + Taz protein_coding retained_intron MGP_C3HHeJ_T0096125.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556320 70563719 + Taz protein_coding retained_intron MGP_C3HHeJ_T0096126.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556320 70563719 + MGP_C3HHeJ_P0096126 Taz protein_coding protein_coding MGP_C3HHeJ_T0096127.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556330 70561850 + Taz protein_coding retained_intron MGP_C3HHeJ_T0096128.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556330 70562275 + Taz protein_coding retained_intron MGP_C3HHeJ_T0096129.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556332 70563719 + MGP_C3HHeJ_P0096129 Taz protein_coding protein_coding MGP_C3HHeJ_T0096130.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556336 70557540 + Taz protein_coding retained_intron MGP_C3HHeJ_T0096131.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556342 70562729 + MGP_C3HHeJ_P0096131 Taz protein_coding protein_coding MGP_C3HHeJ_T0096132.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556359 70557885 + Taz protein_coding retained_intron MGP_C3HHeJ_T0096133.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556491 70562415 + Taz protein_coding retained_intron MGP_C3HHeJ_T0096134.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556578 70562971 + MGP_C3HHeJ_P0096134 Taz protein_coding protein_coding MGP_C3HHeJ_T0096135.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556652 70563056 + MGP_C3HHeJ_P0096135 Taz protein_coding protein_coding MGP_C3HHeJ_T0096136.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70557507 70562919 + MGP_C3HHeJ_P0096136 Taz protein_coding protein_coding MGP_C3HHeJ_T0096137.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70561235 70562180 + Taz protein_coding retained_intron MGP_C3HHeJ_T0096138.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70561590 70563305 + MGP_C3HHeJ_P0096138 Taz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096139.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70561642 70563459 + MGP_C3HHeJ_P0096139 Taz protein_coding protein_coding MGP_C3HHeJ_T0096140.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70562232 70563302 + MGP_C3HHeJ_P0096140 Taz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096141.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70562243 70563252 + Taz protein_coding retained_intron MGP_C3HHeJ_T0101054.1 MGP_C3HHeJ_G0039248.1 mouse_genomes_project X 132816589 132816703 - snoRNA snoRNA MGP_C3HHeJ_T0016663.1 MGP_C3HHeJ_G0014767.1 mouse_genomes_project X 159844926 159845845 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095810.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64693543 64734438 + MGP_C3HHeJ_P0095810 Fmr1 protein_coding protein_coding MGP_C3HHeJ_T0095811.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64693584 64722577 + Fmr1 protein_coding retained_intron MGP_C3HHeJ_T0095812.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64693584 64724561 + Fmr1 protein_coding retained_intron MGP_C3HHeJ_T0095813.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64693584 64695107 + Fmr1 protein_coding processed_transcript MGP_C3HHeJ_T0095814.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64693626 64734438 + MGP_C3HHeJ_P0095814 Fmr1 protein_coding protein_coding MGP_C3HHeJ_T0095815.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64693804 64734438 + MGP_C3HHeJ_P0095815 Fmr1 protein_coding protein_coding MGP_C3HHeJ_T0095816.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64693804 64734438 + MGP_C3HHeJ_P0095816 Fmr1 protein_coding protein_coding MGP_C3HHeJ_T0095817.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64693813 64734438 + MGP_C3HHeJ_P0095817 Fmr1 protein_coding protein_coding MGP_C3HHeJ_T0095818.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64693819 64734438 + MGP_C3HHeJ_P0095818 Fmr1 protein_coding protein_coding MGP_C3HHeJ_T0095819.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64710483 64721874 + Fmr1 protein_coding retained_intron MGP_C3HHeJ_T0095820.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64713346 64714020 + Fmr1 protein_coding retained_intron MGP_C3HHeJ_T0095821.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64727532 64729003 + Fmr1 protein_coding retained_intron MGP_C3HHeJ_T0009355.1 MGP_C3HHeJ_G0007492.1 mouse_genomes_project X 159633254 159657527 + lincRNA lincRNA MGP_C3HHeJ_T0095939.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69915080 69925412 + MGP_C3HHeJ_P0095939 Slc6a8 protein_coding protein_coding MGP_C3HHeJ_T0095940.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69916612 69924197 + MGP_C3HHeJ_P0095940 Slc6a8 protein_coding protein_coding MGP_C3HHeJ_T0095941.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69916694 69925415 + MGP_C3HHeJ_P0095941 Slc6a8 protein_coding protein_coding MGP_C3HHeJ_T0095942.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69916824 69920231 + Slc6a8 protein_coding retained_intron MGP_C3HHeJ_T0095943.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69918412 69920250 + MGP_C3HHeJ_P0095943 Slc6a8 protein_coding protein_coding MGP_C3HHeJ_T0095944.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69919751 69925412 + MGP_C3HHeJ_P0095944 Slc6a8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095945.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69919964 69922674 + Slc6a8 protein_coding retained_intron MGP_C3HHeJ_T0095946.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69921059 69924006 + Slc6a8 protein_coding retained_intron MGP_C3HHeJ_T0095947.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69921783 69922905 + Slc6a8 protein_coding processed_transcript MGP_C3HHeJ_T0095948.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69921798 69922821 + Slc6a8 protein_coding retained_intron MGP_C3HHeJ_T0095949.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69921798 69922908 + Slc6a8 protein_coding retained_intron MGP_C3HHeJ_T0096987.1 MGP_C3HHeJ_G0035756.1 mouse_genomes_project X 132258828 132297227 - MGP_C3HHeJ_P0096987 Zmat1 protein_coding protein_coding MGP_C3HHeJ_T0096988.1 MGP_C3HHeJ_G0035756.1 mouse_genomes_project X 132258831 132297251 - MGP_C3HHeJ_P0096988 Zmat1 protein_coding protein_coding MGP_C3HHeJ_T0096989.1 MGP_C3HHeJ_G0035756.1 mouse_genomes_project X 132260233 132266055 - Zmat1 protein_coding retained_intron MGP_C3HHeJ_T0096975.1 MGP_C3HHeJ_G0035753.1 mouse_genomes_project X 132034148 132038687 + MGP_C3HHeJ_P0096975 protein_coding protein_coding MGP_C3HHeJ_T0095795.1 MGP_C3HHeJ_G0035435.1 mouse_genomes_project X 60233828 60234767 - MGP_C3HHeJ_P0095795 Olfr1173 protein_coding protein_coding MGP_C3HHeJ_T0015986.1 MGP_C3HHeJ_G0014090.1 mouse_genomes_project X 3928664 3929490 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096527.1 MGP_C3HHeJ_G0035620.1 mouse_genomes_project X 97464123 97470079 + MGP_C3HHeJ_P0096527 Awat1 protein_coding protein_coding MGP_C3HHeJ_T0016021.1 MGP_C3HHeJ_G0014125.1 mouse_genomes_project X 12927043 12927880 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016484.1 MGP_C3HHeJ_G0014588.1 mouse_genomes_project X 126666800 126667586 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009341.1 MGP_C3HHeJ_G0007485.1 mouse_genomes_project X 137729977 137828119 - Gm15046 lincRNA lincRNA MGP_C3HHeJ_T0016153.1 MGP_C3HHeJ_G0014257.1 mouse_genomes_project X 57419157 57420000 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096655.1 MGP_C3HHeJ_G0035648.1 mouse_genomes_project X 99097486 99113776 - MGP_C3HHeJ_P0096655 Ercc6l protein_coding protein_coding MGP_C3HHeJ_T0009316.1 MGP_C3HHeJ_G0007473.1 mouse_genomes_project X 97634857 97644149 + Gm14902 lincRNA lincRNA MGP_C3HHeJ_T0095606.1 MGP_C3HHeJ_G0035366.1 mouse_genomes_project X 43928209 43969112 - Aifm1 protein_coding retained_intron MGP_C3HHeJ_T0095607.1 MGP_C3HHeJ_G0035366.1 mouse_genomes_project X 43928209 43969245 - MGP_C3HHeJ_P0095607 Aifm1 protein_coding protein_coding MGP_C3HHeJ_T0095608.1 MGP_C3HHeJ_G0035366.1 mouse_genomes_project X 43928209 43969249 - MGP_C3HHeJ_P0095608 Aifm1 protein_coding protein_coding MGP_C3HHeJ_T0095609.1 MGP_C3HHeJ_G0035366.1 mouse_genomes_project X 43928210 43936166 - Aifm1 protein_coding processed_transcript MGP_C3HHeJ_T0095610.1 MGP_C3HHeJ_G0035366.1 mouse_genomes_project X 43938727 43939788 - Aifm1 protein_coding processed_transcript MGP_C3HHeJ_T0011058.1 MGP_C3HHeJ_G0009191.1 mouse_genomes_project X 48547667 48547766 - Mir351 miRNA miRNA MGP_C3HHeJ_T0102332.1 MGP_C3HHeJ_G0040295.1 mouse_genomes_project X 3402159 3402251 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095799.1 MGP_C3HHeJ_G0035438.1 mouse_genomes_project X 60407036 60419142 - MGP_C3HHeJ_P0095799 Slitrk4 protein_coding protein_coding MGP_C3HHeJ_T0095800.1 MGP_C3HHeJ_G0035438.1 mouse_genomes_project X 60411914 60419125 - MGP_C3HHeJ_P0095800 Slitrk4 protein_coding protein_coding MGP_C3HHeJ_T0095801.1 MGP_C3HHeJ_G0035438.1 mouse_genomes_project X 60414865 60417968 - MGP_C3HHeJ_P0095801 Slitrk4 protein_coding protein_coding MGP_C3HHeJ_T0101056.1 MGP_C3HHeJ_G0039250.1 mouse_genomes_project X 134663483 134663602 + Gm23679 snoRNA snoRNA MGP_C3HHeJ_T0016260.1 MGP_C3HHeJ_G0014364.1 mouse_genomes_project X 82171064 82171432 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016610.1 MGP_C3HHeJ_G0014714.1 mouse_genomes_project X 149739463 149739850 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099817.1 MGP_C3HHeJ_G0038011.1 mouse_genomes_project X 167095894 167096006 - Gm23197 snRNA snRNA MGP_C3HHeJ_T0096818.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108565664 108642687 - MGP_C3HHeJ_P0096818 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096819.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108565664 108642839 - MGP_C3HHeJ_P0096819 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096820.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108565665 108664581 - MGP_C3HHeJ_P0096820 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096821.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108565665 108642839 - MGP_C3HHeJ_P0096821 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096822.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108567251 108642749 - MGP_C3HHeJ_P0096822 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096823.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108613528 108664560 - MGP_C3HHeJ_P0096823 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096824.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108613560 108643242 - MGP_C3HHeJ_P0096824 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096825.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108614467 108710257 - MGP_C3HHeJ_P0096825 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096826.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108618809 108642283 - MGP_C3HHeJ_P0096826 Rps6ka6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096827.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108618886 108717999 - MGP_C3HHeJ_P0096827 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096828.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108625861 108718011 - MGP_C3HHeJ_P0096828 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096829.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108629959 108716393 - MGP_C3HHeJ_P0096829 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0095907.1 MGP_C3HHeJ_G0035472.1 mouse_genomes_project X 69227666 69232240 - MGP_C3HHeJ_P0095907 Pnma5 protein_coding protein_coding MGP_C3HHeJ_T0095908.1 MGP_C3HHeJ_G0035472.1 mouse_genomes_project X 69227673 69231240 - MGP_C3HHeJ_P0095908 Pnma5 protein_coding protein_coding MGP_C3HHeJ_T0095769.1 MGP_C3HHeJ_G0035425.1 mouse_genomes_project X 54952758 55470756 - MGP_C3HHeJ_P0095769 Fgf13 protein_coding protein_coding MGP_C3HHeJ_T0095770.1 MGP_C3HHeJ_G0035425.1 mouse_genomes_project X 54952758 55028755 - MGP_C3HHeJ_P0095770 Fgf13 protein_coding protein_coding MGP_C3HHeJ_T0095771.1 MGP_C3HHeJ_G0035425.1 mouse_genomes_project X 54952758 55061963 - MGP_C3HHeJ_P0095771 Fgf13 protein_coding protein_coding MGP_C3HHeJ_T0095772.1 MGP_C3HHeJ_G0035425.1 mouse_genomes_project X 54954130 55027532 - Fgf13 protein_coding processed_transcript MGP_C3HHeJ_T0095773.1 MGP_C3HHeJ_G0035425.1 mouse_genomes_project X 55025756 55027480 - Fgf13 protein_coding processed_transcript MGP_C3HHeJ_T0095774.1 MGP_C3HHeJ_G0035425.1 mouse_genomes_project X 55025759 55470157 - MGP_C3HHeJ_P0095774 Fgf13 protein_coding protein_coding MGP_C3HHeJ_T0095775.1 MGP_C3HHeJ_G0035425.1 mouse_genomes_project X 55153179 55470756 - MGP_C3HHeJ_P0095775 Fgf13 protein_coding protein_coding MGP_C3HHeJ_T0095776.1 MGP_C3HHeJ_G0035425.1 mouse_genomes_project X 55153256 55470506 - MGP_C3HHeJ_P0095776 Fgf13 protein_coding protein_coding MGP_C3HHeJ_T0095777.1 MGP_C3HHeJ_G0035425.1 mouse_genomes_project X 55469498 55470733 - Fgf13 protein_coding retained_intron MGP_C3HHeJ_T0016372.1 MGP_C3HHeJ_G0014476.1 mouse_genomes_project X 100816149 100816867 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016425.1 MGP_C3HHeJ_G0014529.1 mouse_genomes_project X 109968649 109969630 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016639.1 MGP_C3HHeJ_G0014743.1 mouse_genomes_project X 155857888 155858020 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016242.1 MGP_C3HHeJ_G0014346.1 mouse_genomes_project X 76211925 76212768 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015972.1 MGP_C3HHeJ_G0014076.1 mouse_genomes_project X 2554751 2555950 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095583.1 MGP_C3HHeJ_G0035359.1 mouse_genomes_project X 43454783 43464308 - MGP_C3HHeJ_P0095583 Apln protein_coding protein_coding MGP_C3HHeJ_T0097110.1 MGP_C3HHeJ_G0035805.1 mouse_genomes_project X 137348557 137359121 + MGP_C3HHeJ_P0097110 Cldn2 protein_coding protein_coding MGP_C3HHeJ_T0097111.1 MGP_C3HHeJ_G0035805.1 mouse_genomes_project X 137350521 137356448 + MGP_C3HHeJ_P0097111 Cldn2 protein_coding protein_coding MGP_C3HHeJ_T0097112.1 MGP_C3HHeJ_G0035805.1 mouse_genomes_project X 137353815 137356836 + MGP_C3HHeJ_P0097112 Cldn2 protein_coding protein_coding MGP_C3HHeJ_T0016029.1 MGP_C3HHeJ_G0014133.1 mouse_genomes_project X 14931480 14931696 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016401.1 MGP_C3HHeJ_G0014505.1 mouse_genomes_project X 104474209 104475094 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096362.1 MGP_C3HHeJ_G0035570.1 mouse_genomes_project X 83148218 84563792 - MGP_C3HHeJ_P0096362 Il1rapl1 protein_coding protein_coding MGP_C3HHeJ_T0096363.1 MGP_C3HHeJ_G0035570.1 mouse_genomes_project X 83155585 84326913 - MGP_C3HHeJ_P0096363 Il1rapl1 protein_coding protein_coding MGP_C3HHeJ_T0096364.1 MGP_C3HHeJ_G0035570.1 mouse_genomes_project X 83178940 84563792 - MGP_C3HHeJ_P0096364 Il1rapl1 protein_coding protein_coding MGP_C3HHeJ_T0016086.1 MGP_C3HHeJ_G0014190.1 mouse_genomes_project X 39903322 39903662 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102360.1 MGP_C3HHeJ_G0040323.1 mouse_genomes_project X 85749533 85750587 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011071.1 MGP_C3HHeJ_G0009204.1 mouse_genomes_project X 62851636 62851703 - Mir471 miRNA miRNA MGP_C3HHeJ_T0011097.1 MGP_C3HHeJ_G0009230.1 mouse_genomes_project X 91040442 91040506 + Mir7673 miRNA miRNA MGP_C3HHeJ_T0096886.1 MGP_C3HHeJ_G0035729.1 mouse_genomes_project X 124844135 124858295 - MGP_C3HHeJ_P0096886 Cldn34c4 protein_coding protein_coding MGP_C3HHeJ_T0102370.1 MGP_C3HHeJ_G0040333.1 mouse_genomes_project X 145459211 145461126 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016080.1 MGP_C3HHeJ_G0014184.1 mouse_genomes_project X 38869388 38869560 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016485.1 MGP_C3HHeJ_G0014589.1 mouse_genomes_project X 126740157 126740480 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011114.1 MGP_C3HHeJ_G0009247.1 mouse_genomes_project X 128036890 128037000 - Gm26209 miRNA miRNA MGP_C3HHeJ_T0016514.1 MGP_C3HHeJ_G0014618.1 mouse_genomes_project X 133490378 133490731 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101049.1 MGP_C3HHeJ_G0039243.1 mouse_genomes_project X 128070010 128070139 - Gm25170 snoRNA snoRNA MGP_C3HHeJ_T0095035.1 MGP_C3HHeJ_G0035198.1 mouse_genomes_project X 2303034 2313640 + MGP_C3HHeJ_P0095035 Prickle3 protein_coding protein_coding MGP_C3HHeJ_T0095036.1 MGP_C3HHeJ_G0035198.1 mouse_genomes_project X 2303246 2306903 + Prickle3 protein_coding retained_intron MGP_C3HHeJ_T0095037.1 MGP_C3HHeJ_G0035198.1 mouse_genomes_project X 2304307 2313827 + MGP_C3HHeJ_P0095037 Prickle3 protein_coding protein_coding MGP_C3HHeJ_T0095038.1 MGP_C3HHeJ_G0035198.1 mouse_genomes_project X 2308537 2313640 + Prickle3 protein_coding retained_intron MGP_C3HHeJ_T0095039.1 MGP_C3HHeJ_G0035198.1 mouse_genomes_project X 2311804 2312844 + Prickle3 protein_coding retained_intron MGP_C3HHeJ_T0095440.1 MGP_C3HHeJ_G0035314.1 mouse_genomes_project X 32123374 32123946 + Ube2a protein_coding processed_transcript MGP_C3HHeJ_T0095441.1 MGP_C3HHeJ_G0035314.1 mouse_genomes_project X 32123805 32124842 + Ube2a protein_coding retained_intron MGP_C3HHeJ_T0095442.1 MGP_C3HHeJ_G0035314.1 mouse_genomes_project X 32123805 32133470 + MGP_C3HHeJ_P0095442 Ube2a protein_coding protein_coding MGP_C3HHeJ_T0095443.1 MGP_C3HHeJ_G0035314.1 mouse_genomes_project X 32123815 32134144 + MGP_C3HHeJ_P0095443 Ube2a protein_coding protein_coding MGP_C3HHeJ_T0095444.1 MGP_C3HHeJ_G0035314.1 mouse_genomes_project X 32123960 32134449 + MGP_C3HHeJ_P0095444 Ube2a protein_coding protein_coding MGP_C3HHeJ_T0095445.1 MGP_C3HHeJ_G0035314.1 mouse_genomes_project X 32131696 32133475 + Ube2a protein_coding retained_intron MGP_C3HHeJ_T0016214.1 MGP_C3HHeJ_G0014318.1 mouse_genomes_project X 71457422 71457629 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102345.1 MGP_C3HHeJ_G0040308.1 mouse_genomes_project X 53551919 53552063 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095695.1 MGP_C3HHeJ_G0035397.1 mouse_genomes_project X 48956008 48964404 + MGP_C3HHeJ_P0095695 Etd protein_coding protein_coding MGP_C3HHeJ_T0102365.1 MGP_C3HHeJ_G0040328.1 mouse_genomes_project X 103530077 103533471 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095487.1 MGP_C3HHeJ_G0035337.1 mouse_genomes_project X 33636118 33656692 + MGP_C3HHeJ_P0095487 Atp1b4 protein_coding protein_coding MGP_C3HHeJ_T0095488.1 MGP_C3HHeJ_G0035337.1 mouse_genomes_project X 33636118 33656692 + MGP_C3HHeJ_P0095488 Atp1b4 protein_coding protein_coding MGP_C3HHeJ_T0016693.1 MGP_C3HHeJ_G0014797.1 mouse_genomes_project X 167055290 167055623 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016405.1 MGP_C3HHeJ_G0014509.1 mouse_genomes_project X 104716877 104717192 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005547.1 MGP_C3HHeJ_G0004664.1 mouse_genomes_project X 168533062 168538396 - Gm15726 antisense antisense MGP_C3HHeJ_T0016373.1 MGP_C3HHeJ_G0014477.1 mouse_genomes_project X 100901104 100901627 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016040.1 MGP_C3HHeJ_G0014144.1 mouse_genomes_project X 16760131 16760512 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099759.1 MGP_C3HHeJ_G0037953.1 mouse_genomes_project X 43666560 43666719 + Gm24038 snRNA snRNA MGP_C3HHeJ_T0097157.1 MGP_C3HHeJ_G0035817.1 mouse_genomes_project X 138532725 138570397 + Atg4a protein_coding processed_transcript MGP_C3HHeJ_T0097158.1 MGP_C3HHeJ_G0035817.1 mouse_genomes_project X 138532737 138744066 + MGP_C3HHeJ_P0097158 Atg4a protein_coding protein_coding MGP_C3HHeJ_T0097159.1 MGP_C3HHeJ_G0035817.1 mouse_genomes_project X 138742449 138744207 + Atg4a protein_coding retained_intron MGP_C3HHeJ_T0016648.1 MGP_C3HHeJ_G0014752.1 mouse_genomes_project X 156797039 156797624 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095699.1 MGP_C3HHeJ_G0035401.1 mouse_genomes_project X 49277767 49291414 + MGP_C3HHeJ_P0095699 4930502E18Rik protein_coding protein_coding MGP_C3HHeJ_T0011122.1 MGP_C3HHeJ_G0009255.1 mouse_genomes_project X 140588960 140589055 - Gm44351 miRNA miRNA MGP_C3HHeJ_T0011072.1 MGP_C3HHeJ_G0009205.1 mouse_genomes_project X 62855817 62855888 - Mir741 miRNA miRNA MGP_C3HHeJ_T0011689.1 MGP_C3HHeJ_G0009822.1 mouse_genomes_project X 161074620 161074921 + Gm22257 misc_RNA misc_RNA MGP_C3HHeJ_T0097529.1 MGP_C3HHeJ_G0035903.1 mouse_genomes_project X 159101653 159268796 - MGP_C3HHeJ_P0097529 Cdkl5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097530.1 MGP_C3HHeJ_G0035903.1 mouse_genomes_project X 159101653 159268763 - MGP_C3HHeJ_P0097530 Cdkl5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097531.1 MGP_C3HHeJ_G0035903.1 mouse_genomes_project X 159115430 159331582 - MGP_C3HHeJ_P0097531 Cdkl5 protein_coding protein_coding MGP_C3HHeJ_T0097533.1 MGP_C3HHeJ_G0035903.1 mouse_genomes_project X 159130273 159148341 - Cdkl5 protein_coding processed_transcript MGP_C3HHeJ_T0097534.1 MGP_C3HHeJ_G0035903.1 mouse_genomes_project X 159132514 159268763 - MGP_C3HHeJ_P0097534 Cdkl5 protein_coding protein_coding MGP_C3HHeJ_T0097535.1 MGP_C3HHeJ_G0035903.1 mouse_genomes_project X 159179877 159183425 - Cdkl5 protein_coding retained_intron MGP_C3HHeJ_T0015983.1 MGP_C3HHeJ_G0014087.1 mouse_genomes_project X 3865652 3866315 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011112.1 MGP_C3HHeJ_G0009245.1 mouse_genomes_project X 110265603 110265673 - Mir361 miRNA miRNA MGP_C3HHeJ_T0016039.1 MGP_C3HHeJ_G0014143.1 mouse_genomes_project X 16632787 16634170 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096113.1 MGP_C3HHeJ_G0035508.1 mouse_genomes_project X 70545998 70555979 - MGP_C3HHeJ_P0096113 Dnase1l1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0096114.1 MGP_C3HHeJ_G0035508.1 mouse_genomes_project X 70546004 70555307 - MGP_C3HHeJ_P0096114 Dnase1l1 protein_coding protein_coding MGP_C3HHeJ_T0096115.1 MGP_C3HHeJ_G0035508.1 mouse_genomes_project X 70546005 70555908 - MGP_C3HHeJ_P0096115 Dnase1l1 protein_coding protein_coding MGP_C3HHeJ_T0096116.1 MGP_C3HHeJ_G0035508.1 mouse_genomes_project X 70546106 70555169 - MGP_C3HHeJ_P0096116 Dnase1l1 protein_coding protein_coding MGP_C3HHeJ_T0096117.1 MGP_C3HHeJ_G0035508.1 mouse_genomes_project X 70546760 70555246 - MGP_C3HHeJ_P0096117 Dnase1l1 protein_coding protein_coding MGP_C3HHeJ_T0096118.1 MGP_C3HHeJ_G0035508.1 mouse_genomes_project X 70547155 70550201 - Dnase1l1 protein_coding retained_intron MGP_C3HHeJ_T0096119.1 MGP_C3HHeJ_G0035508.1 mouse_genomes_project X 70550139 70555197 - Dnase1l1 protein_coding retained_intron MGP_C3HHeJ_T0016384.1 MGP_C3HHeJ_G0014488.1 mouse_genomes_project X 102348647 102350629 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016435.1 MGP_C3HHeJ_G0014539.1 mouse_genomes_project X 111640517 111641878 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011115.1 MGP_C3HHeJ_G0009248.1 mouse_genomes_project X 131300409 131300491 + Mir3112 miRNA miRNA MGP_C3HHeJ_T0096918.1 MGP_C3HHeJ_G0035738.1 mouse_genomes_project X 131312530 131339454 - MGP_C3HHeJ_P0096918 Nox1 protein_coding protein_coding MGP_C3HHeJ_T0096919.1 MGP_C3HHeJ_G0035738.1 mouse_genomes_project X 131313161 131339365 - MGP_C3HHeJ_P0096919 Nox1 protein_coding protein_coding MGP_C3HHeJ_T0096920.1 MGP_C3HHeJ_G0035738.1 mouse_genomes_project X 131313253 131339308 - MGP_C3HHeJ_P0096920 Nox1 protein_coding protein_coding MGP_C3HHeJ_T0096921.1 MGP_C3HHeJ_G0035738.1 mouse_genomes_project X 131335394 131461759 - MGP_C3HHeJ_P0096921 Nox1 protein_coding protein_coding MGP_C3HHeJ_T0096922.1 MGP_C3HHeJ_G0035738.1 mouse_genomes_project X 131335394 131370006 - MGP_C3HHeJ_P0096922 Nox1 protein_coding protein_coding MGP_C3HHeJ_T0095698.1 MGP_C3HHeJ_G0035400.1 mouse_genomes_project X 49191956 49192963 - MGP_C3HHeJ_P0095698 Cxx1b protein_coding protein_coding MGP_C3HHeJ_T0097415.1 MGP_C3HHeJ_G0035873.1 mouse_genomes_project X 151819289 151836875 + MGP_C3HHeJ_P0097415 2210013O21Rik protein_coding protein_coding MGP_C3HHeJ_T0097416.1 MGP_C3HHeJ_G0035873.1 mouse_genomes_project X 151819309 151837531 + MGP_C3HHeJ_P0097416 2210013O21Rik protein_coding protein_coding MGP_C3HHeJ_T0097417.1 MGP_C3HHeJ_G0035873.1 mouse_genomes_project X 151819326 151824887 + MGP_C3HHeJ_P0097417 2210013O21Rik protein_coding protein_coding MGP_C3HHeJ_T0097418.1 MGP_C3HHeJ_G0035873.1 mouse_genomes_project X 151819638 151836733 + 2210013O21Rik protein_coding processed_transcript MGP_C3HHeJ_T0016494.1 MGP_C3HHeJ_G0014598.1 mouse_genomes_project X 129365182 129366084 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095471.1 MGP_C3HHeJ_G0035330.1 mouse_genomes_project X 33318457 33323369 - MGP_C3HHeJ_P0095471 Btg1-ps2 protein_coding protein_coding MGP_C3HHeJ_T0095472.1 MGP_C3HHeJ_G0035330.1 mouse_genomes_project X 33318540 33320068 - Btg1-ps2 protein_coding processed_transcript MGP_C3HHeJ_T0016046.1 MGP_C3HHeJ_G0014150.1 mouse_genomes_project X 18559614 18560064 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095369.1 MGP_C3HHeJ_G0035287.1 mouse_genomes_project X 15988928 15993532 + MGP_C3HHeJ_P0095369 Timp1 protein_coding protein_coding MGP_C3HHeJ_T0095370.1 MGP_C3HHeJ_G0035287.1 mouse_genomes_project X 15988983 15993534 + MGP_C3HHeJ_P0095370 Timp1 protein_coding protein_coding MGP_C3HHeJ_T0096443.1 MGP_C3HHeJ_G0035596.1 mouse_genomes_project X 92320928 92328695 - MGP_C3HHeJ_P0096443 Asb12 protein_coding protein_coding MGP_C3HHeJ_T0016288.1 MGP_C3HHeJ_G0014392.1 mouse_genomes_project X 87854282 87855306 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095147.1 MGP_C3HHeJ_G0035221.1 mouse_genomes_project X 2772279 2782591 - MGP_C3HHeJ_P0095147 Was protein_coding protein_coding MGP_C3HHeJ_T0016655.1 MGP_C3HHeJ_G0014759.1 mouse_genomes_project X 158341967 158342401 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016674.1 MGP_C3HHeJ_G0014778.1 mouse_genomes_project X 161726328 161726798 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016521.1 MGP_C3HHeJ_G0014625.1 mouse_genomes_project X 134148335 134148742 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095489.1 MGP_C3HHeJ_G0035338.1 mouse_genomes_project X 33734229 33788477 - MGP_C3HHeJ_P0095489 Lamp2 protein_coding protein_coding MGP_C3HHeJ_T0095490.1 MGP_C3HHeJ_G0035338.1 mouse_genomes_project X 33737934 33788477 - MGP_C3HHeJ_P0095490 Lamp2 protein_coding protein_coding MGP_C3HHeJ_T0095491.1 MGP_C3HHeJ_G0035338.1 mouse_genomes_project X 33751357 33788477 - MGP_C3HHeJ_P0095491 Lamp2 protein_coding protein_coding MGP_C3HHeJ_T0095492.1 MGP_C3HHeJ_G0035338.1 mouse_genomes_project X 33761744 33775404 - Lamp2 protein_coding retained_intron MGP_C3HHeJ_T0095493.1 MGP_C3HHeJ_G0035338.1 mouse_genomes_project X 33785138 33788437 - Lamp2 protein_coding processed_transcript MGP_C3HHeJ_T0016123.1 MGP_C3HHeJ_G0014227.1 mouse_genomes_project X 49759986 49760163 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016647.1 MGP_C3HHeJ_G0014751.1 mouse_genomes_project X 156596790 156597367 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096480.1 MGP_C3HHeJ_G0035608.1 mouse_genomes_project X 94992284 95167427 + MGP_C3HHeJ_P0096480 Ar protein_coding protein_coding MGP_C3HHeJ_T0016360.1 MGP_C3HHeJ_G0014464.1 mouse_genomes_project X 100376071 100377875 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016520.1 MGP_C3HHeJ_G0014624.1 mouse_genomes_project X 134011992 134012621 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016081.1 MGP_C3HHeJ_G0014185.1 mouse_genomes_project X 38983365 38983648 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016228.1 MGP_C3HHeJ_G0014332.1 mouse_genomes_project X 73989297 73989897 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097384.1 MGP_C3HHeJ_G0035860.1 mouse_genomes_project X 150315541 150321115 - Tspyl2 protein_coding retained_intron MGP_C3HHeJ_T0097385.1 MGP_C3HHeJ_G0035860.1 mouse_genomes_project X 150315541 150321115 - Tspyl2 protein_coding retained_intron MGP_C3HHeJ_T0097386.1 MGP_C3HHeJ_G0035860.1 mouse_genomes_project X 150315544 150321115 - MGP_C3HHeJ_P0097386 Tspyl2 protein_coding protein_coding MGP_C3HHeJ_T0097387.1 MGP_C3HHeJ_G0035860.1 mouse_genomes_project X 150317990 150320534 - MGP_C3HHeJ_P0097387 Tspyl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097388.1 MGP_C3HHeJ_G0035860.1 mouse_genomes_project X 150318954 150320491 - Tspyl2 protein_coding retained_intron MGP_C3HHeJ_T0102375.1 MGP_C3HHeJ_G0040338.1 mouse_genomes_project X 152353198 152355468 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0096900.1 MGP_C3HHeJ_G0035733.1 mouse_genomes_project X 131085373 131099966 + MGP_C3HHeJ_P0096900 Tnmd protein_coding protein_coding MGP_C3HHeJ_T0095116.1 MGP_C3HHeJ_G0035211.1 mouse_genomes_project X 2567958 2572761 - MGP_C3HHeJ_P0095116 Pqbp1 protein_coding protein_coding MGP_C3HHeJ_T0095117.1 MGP_C3HHeJ_G0035211.1 mouse_genomes_project X 2568022 2572471 - MGP_C3HHeJ_P0095117 Pqbp1 protein_coding protein_coding MGP_C3HHeJ_T0095118.1 MGP_C3HHeJ_G0035211.1 mouse_genomes_project X 2568150 2572691 - MGP_C3HHeJ_P0095118 Pqbp1 protein_coding protein_coding MGP_C3HHeJ_T0095119.1 MGP_C3HHeJ_G0035211.1 mouse_genomes_project X 2568233 2572492 - MGP_C3HHeJ_P0095119 Pqbp1 protein_coding protein_coding MGP_C3HHeJ_T0095120.1 MGP_C3HHeJ_G0035211.1 mouse_genomes_project X 2569366 2572388 - MGP_C3HHeJ_P0095120 Pqbp1 protein_coding protein_coding MGP_C3HHeJ_T0016529.1 MGP_C3HHeJ_G0014633.1 mouse_genomes_project X 134624555 134625153 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096450.1 MGP_C3HHeJ_G0035599.1 mouse_genomes_project X 92780899 92802424 - MGP_C3HHeJ_P0096450 Las1l protein_coding protein_coding MGP_C3HHeJ_T0096451.1 MGP_C3HHeJ_G0035599.1 mouse_genomes_project X 92786514 92802397 - Las1l protein_coding retained_intron MGP_C3HHeJ_T0096452.1 MGP_C3HHeJ_G0035599.1 mouse_genomes_project X 92790850 92792587 - Las1l protein_coding processed_transcript MGP_C3HHeJ_T0096453.1 MGP_C3HHeJ_G0035599.1 mouse_genomes_project X 92791320 92795442 - Las1l protein_coding processed_transcript MGP_C3HHeJ_T0096454.1 MGP_C3HHeJ_G0035599.1 mouse_genomes_project X 92793818 92802473 - Las1l protein_coding retained_intron MGP_C3HHeJ_T0016636.1 MGP_C3HHeJ_G0014740.1 mouse_genomes_project X 155671670 155672580 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016322.1 MGP_C3HHeJ_G0014426.1 mouse_genomes_project X 92090415 92091398 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011669.1 MGP_C3HHeJ_G0009802.1 mouse_genomes_project X 100578439 100578565 - Gm27927 misc_RNA misc_RNA MGP_C3HHeJ_T0016161.1 MGP_C3HHeJ_G0014265.1 mouse_genomes_project X 58220305 58221405 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016400.1 MGP_C3HHeJ_G0014504.1 mouse_genomes_project X 104091879 104092171 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096294.1 MGP_C3HHeJ_G0035548.1 mouse_genomes_project X 73824738 73977537 + MGP_C3HHeJ_P0096294 Tbl1x protein_coding protein_coding MGP_C3HHeJ_T0096295.1 MGP_C3HHeJ_G0035548.1 mouse_genomes_project X 73824939 73974298 + Tbl1x protein_coding retained_intron MGP_C3HHeJ_T0096522.1 MGP_C3HHeJ_G0035617.1 mouse_genomes_project X 97317314 97318187 + MGP_C3HHeJ_P0096522 Otud6a protein_coding protein_coding MGP_C3HHeJ_T0011682.1 MGP_C3HHeJ_G0009815.1 mouse_genomes_project X 135286441 135286726 - Gm25393 misc_RNA misc_RNA MGP_C3HHeJ_T0096470.1 MGP_C3HHeJ_G0035604.1 mouse_genomes_project X 93566184 93569252 + Gpr165 protein_coding retained_intron MGP_C3HHeJ_T0096471.1 MGP_C3HHeJ_G0035604.1 mouse_genomes_project X 93566235 93572120 + MGP_C3HHeJ_P0096471 Gpr165 protein_coding protein_coding MGP_C3HHeJ_T0096472.1 MGP_C3HHeJ_G0035604.1 mouse_genomes_project X 93566256 93568517 + Gpr165 protein_coding retained_intron MGP_C3HHeJ_T0096473.1 MGP_C3HHeJ_G0035604.1 mouse_genomes_project X 93566928 93572014 + Gpr165 protein_coding retained_intron MGP_C3HHeJ_T0016122.1 MGP_C3HHeJ_G0014226.1 mouse_genomes_project X 49401411 49401892 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016587.1 MGP_C3HHeJ_G0014691.1 mouse_genomes_project X 143695171 143695705 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009347.1 MGP_C3HHeJ_G0007490.1 mouse_genomes_project X 149115926 149117872 + Gm15138 lincRNA lincRNA MGP_C3HHeJ_T0096491.1 MGP_C3HHeJ_G0035610.1 mouse_genomes_project X 95785152 95794005 + MGP_C3HHeJ_P0096491 Yipf6 protein_coding protein_coding MGP_C3HHeJ_T0096492.1 MGP_C3HHeJ_G0035610.1 mouse_genomes_project X 95786146 95792509 + MGP_C3HHeJ_P0096492 Yipf6 protein_coding protein_coding MGP_C3HHeJ_T0096493.1 MGP_C3HHeJ_G0035610.1 mouse_genomes_project X 95786174 95788755 + MGP_C3HHeJ_P0096493 Yipf6 protein_coding protein_coding MGP_C3HHeJ_T0096494.1 MGP_C3HHeJ_G0035610.1 mouse_genomes_project X 95786634 95793780 + Yipf6 protein_coding retained_intron MGP_C3HHeJ_T0096495.1 MGP_C3HHeJ_G0035610.1 mouse_genomes_project X 95786634 95797896 + MGP_C3HHeJ_P0096495 Yipf6 protein_coding protein_coding MGP_C3HHeJ_T0096496.1 MGP_C3HHeJ_G0035610.1 mouse_genomes_project X 95787080 95792909 + Yipf6 protein_coding retained_intron MGP_C3HHeJ_T0096690.1 MGP_C3HHeJ_G0035660.1 mouse_genomes_project X 100461733 100502976 + MGP_C3HHeJ_P0096690 Chic1 protein_coding protein_coding MGP_C3HHeJ_T0096766.1 MGP_C3HHeJ_G0035683.1 mouse_genomes_project X 103854131 103884277 - MGP_C3HHeJ_P0096766 Cysltr1 protein_coding protein_coding MGP_C3HHeJ_T0096767.1 MGP_C3HHeJ_G0035683.1 mouse_genomes_project X 103857682 103860724 - MGP_C3HHeJ_P0096767 Cysltr1 protein_coding protein_coding MGP_C3HHeJ_T0096700.1 MGP_C3HHeJ_G0035666.1 mouse_genomes_project X 101231519 101348154 - MGP_C3HHeJ_P0096700 C77370 protein_coding protein_coding MGP_C3HHeJ_T0096701.1 MGP_C3HHeJ_G0035666.1 mouse_genomes_project X 101231520 101348086 - MGP_C3HHeJ_P0096701 C77370 protein_coding protein_coding MGP_C3HHeJ_T0096702.1 MGP_C3HHeJ_G0035666.1 mouse_genomes_project X 101237799 101348113 - MGP_C3HHeJ_P0096702 C77370 protein_coding protein_coding MGP_C3HHeJ_T0009314.1 MGP_C3HHeJ_G0007471.1 mouse_genomes_project X 96275506 96314485 - Gm14812 lincRNA lincRNA MGP_C3HHeJ_T0097378.1 MGP_C3HHeJ_G0035859.1 mouse_genomes_project X 150206551 150247696 + MGP_C3HHeJ_P0097378 Kdm5c protein_coding protein_coding MGP_C3HHeJ_T0097379.1 MGP_C3HHeJ_G0035859.1 mouse_genomes_project X 150206760 150248463 + MGP_C3HHeJ_P0097379 Kdm5c protein_coding protein_coding MGP_C3HHeJ_T0097380.1 MGP_C3HHeJ_G0035859.1 mouse_genomes_project X 150206785 150220279 + Kdm5c protein_coding retained_intron MGP_C3HHeJ_T0097381.1 MGP_C3HHeJ_G0035859.1 mouse_genomes_project X 150206803 150247700 + MGP_C3HHeJ_P0097381 Kdm5c protein_coding protein_coding MGP_C3HHeJ_T0097382.1 MGP_C3HHeJ_G0035859.1 mouse_genomes_project X 150243733 150245484 + MGP_C3HHeJ_P0097382 Kdm5c protein_coding protein_coding MGP_C3HHeJ_T0097383.1 MGP_C3HHeJ_G0035859.1 mouse_genomes_project X 150245840 150247324 + MGP_C3HHeJ_P0097383 Kdm5c protein_coding protein_coding MGP_C3HHeJ_T0095197.1 MGP_C3HHeJ_G0035231.1 mouse_genomes_project X 3114288 3116626 + MGP_C3HHeJ_P0095197 protein_coding protein_coding MGP_C3HHeJ_T0016130.1 MGP_C3HHeJ_G0014234.1 mouse_genomes_project X 53541305 53542481 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095705.1 MGP_C3HHeJ_G0035406.1 mouse_genomes_project X 52265929 52267132 + MGP_C3HHeJ_P0095705 Gm2174 protein_coding protein_coding MGP_C3HHeJ_T0016356.1 MGP_C3HHeJ_G0014460.1 mouse_genomes_project X 100138037 100138727 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016150.1 MGP_C3HHeJ_G0014254.1 mouse_genomes_project X 56909078 56909803 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016566.1 MGP_C3HHeJ_G0014670.1 mouse_genomes_project X 140035519 140035729 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016176.1 MGP_C3HHeJ_G0014280.1 mouse_genomes_project X 63050321 63050850 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098222.1 MGP_C3HHeJ_G0036434.1 mouse_genomes_project X 64995151 64995272 - n-R5s7 rRNA rRNA MGP_C3HHeJ_T0016528.1 MGP_C3HHeJ_G0014632.1 mouse_genomes_project X 134609750 134610584 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095589.1 MGP_C3HHeJ_G0035361.1 mouse_genomes_project X 43581333 43596442 + MGP_C3HHeJ_P0095589 Sash3 protein_coding protein_coding MGP_C3HHeJ_T0016115.1 MGP_C3HHeJ_G0014219.1 mouse_genomes_project X 48260960 48261283 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016320.1 MGP_C3HHeJ_G0014424.1 mouse_genomes_project X 91824033 91825278 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016443.1 MGP_C3HHeJ_G0014547.1 mouse_genomes_project X 112826982 112827372 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095700.1 MGP_C3HHeJ_G0035402.1 mouse_genomes_project X 49295872 49310389 - MGP_C3HHeJ_P0095700 1700013H16Rik protein_coding protein_coding MGP_C3HHeJ_T0016381.1 MGP_C3HHeJ_G0014485.1 mouse_genomes_project X 102148677 102149175 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098256.1 MGP_C3HHeJ_G0036468.1 mouse_genomes_project X 150892459 150892700 + Gm24687 ribozyme ribozyme MGP_C3HHeJ_T0016675.1 MGP_C3HHeJ_G0014779.1 mouse_genomes_project X 161882431 161883916 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016234.1 MGP_C3HHeJ_G0014338.1 mouse_genomes_project X 74708246 74712607 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015965.1 MGP_C3HHeJ_G0014069.1 mouse_genomes_project X 1777333 1777764 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097073.1 MGP_C3HHeJ_G0035790.1 mouse_genomes_project X 134554168 134587446 + MGP_C3HHeJ_P0097073 Fam199x protein_coding protein_coding MGP_C3HHeJ_T0095417.1 MGP_C3HHeJ_G0035305.1 mouse_genomes_project X 31422374 31427631 + MGP_C3HHeJ_P0095417 Zcchc12 protein_coding protein_coding MGP_C3HHeJ_T0095418.1 MGP_C3HHeJ_G0035305.1 mouse_genomes_project X 31422416 31427639 + MGP_C3HHeJ_P0095418 Zcchc12 protein_coding protein_coding MGP_C3HHeJ_T0095419.1 MGP_C3HHeJ_G0035305.1 mouse_genomes_project X 31422429 31427638 + MGP_C3HHeJ_P0095419 Zcchc12 protein_coding protein_coding MGP_C3HHeJ_T0095420.1 MGP_C3HHeJ_G0035305.1 mouse_genomes_project X 31422456 31427638 + MGP_C3HHeJ_P0095420 Zcchc12 protein_coding protein_coding MGP_C3HHeJ_T0009309.1 MGP_C3HHeJ_G0007466.1 mouse_genomes_project X 87675875 87676499 + Gm14773 lincRNA lincRNA MGP_C3HHeJ_T0016330.1 MGP_C3HHeJ_G0014434.1 mouse_genomes_project X 93836190 93836582 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011078.1 MGP_C3HHeJ_G0009211.1 mouse_genomes_project X 62876966 62877041 - Mir470 miRNA miRNA MGP_C3HHeJ_T0016251.1 MGP_C3HHeJ_G0014355.1 mouse_genomes_project X 78727185 78728335 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101061.1 MGP_C3HHeJ_G0039255.1 mouse_genomes_project X 148719946 148720074 - Gm24907 snoRNA snoRNA MGP_C3HHeJ_T0016206.1 MGP_C3HHeJ_G0014310.1 mouse_genomes_project X 70780210 70780654 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095226.1 MGP_C3HHeJ_G0035249.1 mouse_genomes_project X 4931542 5094287 - MGP_C3HHeJ_P0095226 Rpgr protein_coding protein_coding MGP_C3HHeJ_T0095227.1 MGP_C3HHeJ_G0035249.1 mouse_genomes_project X 5027096 5094287 - MGP_C3HHeJ_P0095227 Rpgr protein_coding protein_coding MGP_C3HHeJ_T0095228.1 MGP_C3HHeJ_G0035249.1 mouse_genomes_project X 5027554 5094060 - MGP_C3HHeJ_P0095228 Rpgr protein_coding protein_coding MGP_C3HHeJ_T0095229.1 MGP_C3HHeJ_G0035249.1 mouse_genomes_project X 5030477 5094287 - MGP_C3HHeJ_P0095229 Rpgr protein_coding protein_coding MGP_C3HHeJ_T0095230.1 MGP_C3HHeJ_G0035249.1 mouse_genomes_project X 5052868 5094125 - Rpgr protein_coding retained_intron MGP_C3HHeJ_T0095231.1 MGP_C3HHeJ_G0035249.1 mouse_genomes_project X 5084431 5094100 - Rpgr protein_coding retained_intron MGP_C3HHeJ_T0095232.1 MGP_C3HHeJ_G0035249.1 mouse_genomes_project X 5090929 5093849 - Rpgr protein_coding processed_transcript MGP_C3HHeJ_T0095951.1 MGP_C3HHeJ_G0035488.1 mouse_genomes_project X 69961561 69983378 + MGP_C3HHeJ_P0095951 Abcd1 protein_coding protein_coding MGP_C3HHeJ_T0095952.1 MGP_C3HHeJ_G0035488.1 mouse_genomes_project X 69961704 69976396 + MGP_C3HHeJ_P0095952 Abcd1 protein_coding protein_coding MGP_C3HHeJ_T0097638.1 MGP_C3HHeJ_G0035933.1 mouse_genomes_project X 164611735 164630802 + MGP_C3HHeJ_P0097638 Gemin8 protein_coding protein_coding MGP_C3HHeJ_T0097639.1 MGP_C3HHeJ_G0035933.1 mouse_genomes_project X 164619405 164621785 + MGP_C3HHeJ_P0097639 Gemin8 protein_coding protein_coding MGP_C3HHeJ_T0097511.1 MGP_C3HHeJ_G0035899.1 mouse_genomes_project X 158719624 158793910 + Adgrg2 protein_coding retained_intron MGP_C3HHeJ_T0097512.1 MGP_C3HHeJ_G0035899.1 mouse_genomes_project X 158719624 158802242 + MGP_C3HHeJ_P0097512 Adgrg2 protein_coding protein_coding MGP_C3HHeJ_T0097513.1 MGP_C3HHeJ_G0035899.1 mouse_genomes_project X 158748122 158829136 + MGP_C3HHeJ_P0097513 Adgrg2 protein_coding protein_coding MGP_C3HHeJ_T0097514.1 MGP_C3HHeJ_G0035899.1 mouse_genomes_project X 158756596 158829385 + MGP_C3HHeJ_P0097514 Adgrg2 protein_coding protein_coding MGP_C3HHeJ_T0095841.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67338846 67452848 + MGP_C3HHeJ_P0095841 Mtm1 protein_coding protein_coding MGP_C3HHeJ_T0095842.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67342981 67452848 + MGP_C3HHeJ_P0095842 Mtm1 protein_coding protein_coding MGP_C3HHeJ_T0095843.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67342981 67452848 + MGP_C3HHeJ_P0095843 Mtm1 protein_coding protein_coding MGP_C3HHeJ_T0095844.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67342981 67390938 + MGP_C3HHeJ_P0095844 Mtm1 protein_coding protein_coding MGP_C3HHeJ_T0095845.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67343003 67452841 + MGP_C3HHeJ_P0095845 Mtm1 protein_coding protein_coding MGP_C3HHeJ_T0095846.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67343006 67433703 + Mtm1 protein_coding retained_intron MGP_C3HHeJ_T0095847.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67343011 67432424 + Mtm1 protein_coding retained_intron MGP_C3HHeJ_T0095848.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67343014 67452818 + MGP_C3HHeJ_P0095848 Mtm1 protein_coding protein_coding MGP_C3HHeJ_T0095849.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67343034 67447866 + Mtm1 protein_coding retained_intron MGP_C3HHeJ_T0095850.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67343057 67452818 + MGP_C3HHeJ_P0095850 Mtm1 protein_coding protein_coding MGP_C3HHeJ_T0095851.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67343060 67364690 + Mtm1 protein_coding retained_intron MGP_C3HHeJ_T0095852.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67343060 67384467 + Mtm1 protein_coding retained_intron MGP_C3HHeJ_T0095853.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67436258 67453244 + Mtm1 protein_coding retained_intron MGP_C3HHeJ_T0097107.1 MGP_C3HHeJ_G0035803.1 mouse_genomes_project X 137254712 137255381 - protein_coding translated_processed_pseudogene MGP_C3HHeJ_T0016277.1 MGP_C3HHeJ_G0014381.1 mouse_genomes_project X 85467924 85468197 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098231.1 MGP_C3HHeJ_G0036443.1 mouse_genomes_project X 150285338 150285449 + n-R5s15 rRNA rRNA MGP_C3HHeJ_T0016618.1 MGP_C3HHeJ_G0014722.1 mouse_genomes_project X 151876620 151876900 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018412.1 MGP_C3HHeJ_G0015543.1 mouse_genomes_project X 98202415 98227981 + Gm21986 processed_transcript processed_transcript MGP_C3HHeJ_T0096910.1 MGP_C3HHeJ_G0035737.1 mouse_genomes_project X 131284310 131312156 + MGP_C3HHeJ_P0096910 Cstf2 protein_coding protein_coding MGP_C3HHeJ_T0096911.1 MGP_C3HHeJ_G0035737.1 mouse_genomes_project X 131284320 131312929 + MGP_C3HHeJ_P0096911 Cstf2 protein_coding protein_coding MGP_C3HHeJ_T0096912.1 MGP_C3HHeJ_G0035737.1 mouse_genomes_project X 131284338 131300957 + MGP_C3HHeJ_P0096912 Cstf2 protein_coding protein_coding MGP_C3HHeJ_T0096913.1 MGP_C3HHeJ_G0035737.1 mouse_genomes_project X 131284434 131286610 + Cstf2 protein_coding processed_transcript MGP_C3HHeJ_T0096914.1 MGP_C3HHeJ_G0035737.1 mouse_genomes_project X 131284457 131312929 + Cstf2 protein_coding retained_intron MGP_C3HHeJ_T0096915.1 MGP_C3HHeJ_G0035737.1 mouse_genomes_project X 131284457 131287747 + MGP_C3HHeJ_P0096915 Cstf2 protein_coding protein_coding MGP_C3HHeJ_T0096916.1 MGP_C3HHeJ_G0035737.1 mouse_genomes_project X 131287510 131299367 + MGP_C3HHeJ_P0096916 Cstf2 protein_coding protein_coding MGP_C3HHeJ_T0096917.1 MGP_C3HHeJ_G0035737.1 mouse_genomes_project X 131291374 131299404 + MGP_C3HHeJ_P0096917 Cstf2 protein_coding protein_coding MGP_C3HHeJ_T0016182.1 MGP_C3HHeJ_G0014286.1 mouse_genomes_project X 64343080 64343446 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016254.1 MGP_C3HHeJ_G0014358.1 mouse_genomes_project X 80420948 80421380 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096344.1 MGP_C3HHeJ_G0035563.1 mouse_genomes_project X 81613449 81634549 + MGP_C3HHeJ_P0096344 Fthl17a protein_coding protein_coding MGP_C3HHeJ_T0101028.1 MGP_C3HHeJ_G0039222.1 mouse_genomes_project X 70060002 70060067 + Gm23615 snoRNA snoRNA MGP_C3HHeJ_T0097602.1 MGP_C3HHeJ_G0035922.1 mouse_genomes_project X 162566357 162615444 + MGP_C3HHeJ_P0097602 Ace2 protein_coding protein_coding MGP_C3HHeJ_T0097603.1 MGP_C3HHeJ_G0035922.1 mouse_genomes_project X 162567503 162615444 + MGP_C3HHeJ_P0097603 Ace2 protein_coding protein_coding MGP_C3HHeJ_T0097604.1 MGP_C3HHeJ_G0035922.1 mouse_genomes_project X 162589228 162612848 + MGP_C3HHeJ_P0097604 Ace2 protein_coding protein_coding MGP_C3HHeJ_T0099749.1 MGP_C3HHeJ_G0037943.1 mouse_genomes_project X 15718527 15718700 - Gm23628 snRNA snRNA MGP_C3HHeJ_T0095683.1 MGP_C3HHeJ_G0035392.1 mouse_genomes_project X 48480575 48514686 + MGP_C3HHeJ_P0095683 Hprt protein_coding protein_coding MGP_C3HHeJ_T0096789.1 MGP_C3HHeJ_G0035691.1 mouse_genomes_project X 104983888 105005884 + MGP_C3HHeJ_P0096789 Tbx22 protein_coding protein_coding MGP_C3HHeJ_T0096790.1 MGP_C3HHeJ_G0035691.1 mouse_genomes_project X 104983888 104997098 + MGP_C3HHeJ_P0096790 Tbx22 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096791.1 MGP_C3HHeJ_G0035691.1 mouse_genomes_project X 104992436 105003757 + MGP_C3HHeJ_P0096791 Tbx22 protein_coding protein_coding MGP_C3HHeJ_T0096792.1 MGP_C3HHeJ_G0035691.1 mouse_genomes_project X 104994887 105005887 + MGP_C3HHeJ_P0096792 Tbx22 protein_coding protein_coding MGP_C3HHeJ_T0096793.1 MGP_C3HHeJ_G0035691.1 mouse_genomes_project X 104994939 105004482 + MGP_C3HHeJ_P0096793 Tbx22 protein_coding protein_coding MGP_C3HHeJ_T0005525.1 MGP_C3HHeJ_G0004649.1 mouse_genomes_project X 93109380 93113091 + F630028O10Rik antisense antisense MGP_C3HHeJ_T0005526.1 MGP_C3HHeJ_G0004649.1 mouse_genomes_project X 93109420 93113091 + F630028O10Rik antisense antisense MGP_C3HHeJ_T0095298.1 MGP_C3HHeJ_G0035269.1 mouse_genomes_project X 12134082 12326839 - MGP_C3HHeJ_P0095298 Efhc2 protein_coding protein_coding MGP_C3HHeJ_T0016241.1 MGP_C3HHeJ_G0014345.1 mouse_genomes_project X 75302749 75302971 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016246.1 MGP_C3HHeJ_G0014350.1 mouse_genomes_project X 76854683 76856825 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096227.1 MGP_C3HHeJ_G0035528.1 mouse_genomes_project X 71218980 71236254 + MGP_C3HHeJ_P0096227 protein_coding protein_coding MGP_C3HHeJ_T0099786.1 MGP_C3HHeJ_G0037980.1 mouse_genomes_project X 103085339 103085451 + Gm23656 snRNA snRNA MGP_C3HHeJ_T0011692.1 MGP_C3HHeJ_G0009825.1 mouse_genomes_project X 167823774 167823943 + Gm27980 misc_RNA misc_RNA MGP_C3HHeJ_T0099763.1 MGP_C3HHeJ_G0037957.1 mouse_genomes_project X 52591456 52591562 + Gm23258 snRNA snRNA MGP_C3HHeJ_T0095651.1 MGP_C3HHeJ_G0035380.1 mouse_genomes_project X 45856374 45857373 - MGP_C3HHeJ_P0095651 Olfr1324 protein_coding protein_coding MGP_C3HHeJ_T0016154.1 MGP_C3HHeJ_G0014258.1 mouse_genomes_project X 57578657 57579092 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097163.1 MGP_C3HHeJ_G0035819.1 mouse_genomes_project X 139076275 139289301 + MGP_C3HHeJ_P0097163 Col4a5 protein_coding protein_coding MGP_C3HHeJ_T0097164.1 MGP_C3HHeJ_G0035819.1 mouse_genomes_project X 139076300 139289247 + MGP_C3HHeJ_P0097164 Col4a5 protein_coding protein_coding MGP_C3HHeJ_T0097165.1 MGP_C3HHeJ_G0035819.1 mouse_genomes_project X 139226192 139289301 + MGP_C3HHeJ_P0097165 Col4a5 protein_coding protein_coding MGP_C3HHeJ_T0097166.1 MGP_C3HHeJ_G0035819.1 mouse_genomes_project X 139254412 139271783 + Col4a5 protein_coding processed_transcript MGP_C3HHeJ_T0096711.1 MGP_C3HHeJ_G0035672.1 mouse_genomes_project X 102326790 102330340 + MGP_C3HHeJ_P0096711 Magee1 protein_coding protein_coding MGP_C3HHeJ_T0095659.1 MGP_C3HHeJ_G0035384.1 mouse_genomes_project X 46550338 46640309 - MGP_C3HHeJ_P0095659 Mbnl3 protein_coding protein_coding MGP_C3HHeJ_T0095660.1 MGP_C3HHeJ_G0035384.1 mouse_genomes_project X 46553151 46640467 - MGP_C3HHeJ_P0095660 Mbnl3 protein_coding protein_coding MGP_C3HHeJ_T0095661.1 MGP_C3HHeJ_G0035384.1 mouse_genomes_project X 46553151 46581126 - MGP_C3HHeJ_P0095661 Mbnl3 protein_coding protein_coding MGP_C3HHeJ_T0095662.1 MGP_C3HHeJ_G0035384.1 mouse_genomes_project X 46553523 46561844 - Mbnl3 protein_coding retained_intron MGP_C3HHeJ_T0095663.1 MGP_C3HHeJ_G0035384.1 mouse_genomes_project X 46553560 46599155 - MGP_C3HHeJ_P0095663 Mbnl3 protein_coding protein_coding MGP_C3HHeJ_T0095664.1 MGP_C3HHeJ_G0035384.1 mouse_genomes_project X 46553956 46573982 - Mbnl3 protein_coding processed_transcript MGP_C3HHeJ_T0095665.1 MGP_C3HHeJ_G0035384.1 mouse_genomes_project X 46598897 46641009 - Mbnl3 protein_coding processed_transcript MGP_C3HHeJ_T0016207.1 MGP_C3HHeJ_G0014311.1 mouse_genomes_project X 70791246 70791634 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011039.1 MGP_C3HHeJ_G0009172.1 mouse_genomes_project X 33515559 33515639 + Mir3110 miRNA miRNA MGP_C3HHeJ_T0016535.1 MGP_C3HHeJ_G0014639.1 mouse_genomes_project X 136006257 136007500 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095611.1 MGP_C3HHeJ_G0035367.1 mouse_genomes_project X 43975668 43986607 + MGP_C3HHeJ_P0095611 Rab33a protein_coding protein_coding MGP_C3HHeJ_T0096869.1 MGP_C3HHeJ_G0035721.1 mouse_genomes_project X 115639672 115640733 - MGP_C3HHeJ_P0096869 protein_coding protein_coding MGP_C3HHeJ_T0101298.1 MGP_C3HHeJ_G0039393.1 mouse_genomes_project X 49599436 49599672 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0096895.1 MGP_C3HHeJ_G0035732.1 mouse_genomes_project X 130815491 130920396 - MGP_C3HHeJ_P0096895 Pcdh19 protein_coding protein_coding MGP_C3HHeJ_T0096896.1 MGP_C3HHeJ_G0035732.1 mouse_genomes_project X 130815506 130919791 - MGP_C3HHeJ_P0096896 Pcdh19 protein_coding protein_coding MGP_C3HHeJ_T0096897.1 MGP_C3HHeJ_G0035732.1 mouse_genomes_project X 130815510 130918420 - MGP_C3HHeJ_P0096897 Pcdh19 protein_coding protein_coding MGP_C3HHeJ_T0096898.1 MGP_C3HHeJ_G0035732.1 mouse_genomes_project X 130815511 130820643 - MGP_C3HHeJ_P0096898 Pcdh19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096899.1 MGP_C3HHeJ_G0035732.1 mouse_genomes_project X 130913886 130917518 - Pcdh19 protein_coding processed_transcript MGP_C3HHeJ_T0011664.1 MGP_C3HHeJ_G0009797.1 mouse_genomes_project X 64693487 64693615 + Gm27838 misc_RNA misc_RNA MGP_C3HHeJ_T0099813.1 MGP_C3HHeJ_G0038007.1 mouse_genomes_project X 161549274 161549381 - Gm22746 snRNA snRNA MGP_C3HHeJ_T0096258.1 MGP_C3HHeJ_G0035535.1 mouse_genomes_project X 71486712 71722202 - MGP_C3HHeJ_P0096258 F8 protein_coding protein_coding MGP_C3HHeJ_T0096259.1 MGP_C3HHeJ_G0035535.1 mouse_genomes_project X 71486716 71719927 - MGP_C3HHeJ_P0096259 F8 protein_coding protein_coding MGP_C3HHeJ_T0096260.1 MGP_C3HHeJ_G0035535.1 mouse_genomes_project X 71672840 71722500 - MGP_C3HHeJ_P0096260 F8 protein_coding protein_coding MGP_C3HHeJ_T0096261.1 MGP_C3HHeJ_G0035535.1 mouse_genomes_project X 71690059 71722177 - MGP_C3HHeJ_P0096261 F8 protein_coding protein_coding MGP_C3HHeJ_T0016434.1 MGP_C3HHeJ_G0014538.1 mouse_genomes_project X 111357002 111357741 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097580.1 MGP_C3HHeJ_G0035915.1 mouse_genomes_project X 162184392 162185583 - MGP_C3HHeJ_P0097580 Rnf138rt1 protein_coding protein_coding MGP_C3HHeJ_T0016563.1 MGP_C3HHeJ_G0014667.1 mouse_genomes_project X 139816583 139816841 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096303.1 MGP_C3HHeJ_G0035553.1 mouse_genomes_project X 74505877 74511403 + MGP_C3HHeJ_P0096303 protein_coding protein_coding MGP_C3HHeJ_T0016415.1 MGP_C3HHeJ_G0014519.1 mouse_genomes_project X 108754936 108758233 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016367.1 MGP_C3HHeJ_G0014471.1 mouse_genomes_project X 100624711 100625140 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011079.1 MGP_C3HHeJ_G0009212.1 mouse_genomes_project X 62900462 62900520 - Mir465d miRNA miRNA MGP_C3HHeJ_T0009289.1 MGP_C3HHeJ_G0007451.1 mouse_genomes_project X 32059927 32062816 - Mdrl lincRNA lincRNA MGP_C3HHeJ_T0097035.1 MGP_C3HHeJ_G0035776.1 mouse_genomes_project X 133570850 133580911 + MGP_C3HHeJ_P0097035 Tceal7 protein_coding protein_coding MGP_C3HHeJ_T0097036.1 MGP_C3HHeJ_G0035776.1 mouse_genomes_project X 133579564 133581624 + MGP_C3HHeJ_P0097036 Tceal7 protein_coding protein_coding MGP_C3HHeJ_T0096754.1 MGP_C3HHeJ_G0035680.1 mouse_genomes_project X 103407432 103424483 + MGP_C3HHeJ_P0096754 protein_coding protein_coding MGP_C3HHeJ_T0096755.1 MGP_C3HHeJ_G0035680.1 mouse_genomes_project X 103411972 103415125 + protein_coding retained_intron MGP_C3HHeJ_T0016222.1 MGP_C3HHeJ_G0014326.1 mouse_genomes_project X 73005704 73006419 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016451.1 MGP_C3HHeJ_G0014555.1 mouse_genomes_project X 114809218 114810207 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016091.1 MGP_C3HHeJ_G0014195.1 mouse_genomes_project X 41544206 41545739 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097391.1 MGP_C3HHeJ_G0035862.1 mouse_genomes_project X 150569664 150570300 + MGP_C3HHeJ_P0097391 Cldn34a protein_coding protein_coding MGP_C3HHeJ_T0099804.1 MGP_C3HHeJ_G0037998.1 mouse_genomes_project X 144005381 144005441 - Gm26151 snRNA snRNA MGP_C3HHeJ_T0097557.1 MGP_C3HHeJ_G0035910.1 mouse_genomes_project X 161169077 161201973 - Txlng protein_coding retained_intron MGP_C3HHeJ_T0097558.1 MGP_C3HHeJ_G0035910.1 mouse_genomes_project X 161169077 161218959 - MGP_C3HHeJ_P0097558 Txlng protein_coding protein_coding MGP_C3HHeJ_T0097559.1 MGP_C3HHeJ_G0035910.1 mouse_genomes_project X 161169077 161218959 - MGP_C3HHeJ_P0097559 Txlng protein_coding protein_coding MGP_C3HHeJ_T0097560.1 MGP_C3HHeJ_G0035910.1 mouse_genomes_project X 161179076 161218959 - MGP_C3HHeJ_P0097560 Txlng protein_coding protein_coding MGP_C3HHeJ_T0097561.1 MGP_C3HHeJ_G0035910.1 mouse_genomes_project X 161180761 161218845 - MGP_C3HHeJ_P0097561 Txlng protein_coding protein_coding MGP_C3HHeJ_T0097562.1 MGP_C3HHeJ_G0035910.1 mouse_genomes_project X 161217564 161218959 - Txlng protein_coding processed_transcript MGP_C3HHeJ_T0095794.1 MGP_C3HHeJ_G0035434.1 mouse_genomes_project X 58456550 58457372 + MGP_C3HHeJ_P0095794 4931400O07Rik protein_coding protein_coding MGP_C3HHeJ_T0096305.1 MGP_C3HHeJ_G0035555.1 mouse_genomes_project X 74674146 74675632 + MGP_C3HHeJ_P0096305 4930480E11Rik protein_coding protein_coding MGP_C3HHeJ_T0016173.1 MGP_C3HHeJ_G0014277.1 mouse_genomes_project X 62162187 62162445 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095893.1 MGP_C3HHeJ_G0035466.1 mouse_genomes_project X 68570963 68575952 - MGP_C3HHeJ_P0095893 Magea10 protein_coding protein_coding MGP_C3HHeJ_T0016346.1 MGP_C3HHeJ_G0014450.1 mouse_genomes_project X 98143904 98144173 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097109.1 MGP_C3HHeJ_G0035804.1 mouse_genomes_project X 137327591 137330396 - MGP_C3HHeJ_P0097109 Ripply1 protein_coding protein_coding MGP_C3HHeJ_T0097459.1 MGP_C3HHeJ_G0035889.1 mouse_genomes_project X 155960387 156013936 + MGP_C3HHeJ_P0097459 Smpx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097460.1 MGP_C3HHeJ_G0035889.1 mouse_genomes_project X 155960387 155964490 + MGP_C3HHeJ_P0097460 Smpx protein_coding protein_coding MGP_C3HHeJ_T0097461.1 MGP_C3HHeJ_G0035889.1 mouse_genomes_project X 155960450 156013934 + MGP_C3HHeJ_P0097461 Smpx protein_coding protein_coding MGP_C3HHeJ_T0097462.1 MGP_C3HHeJ_G0035889.1 mouse_genomes_project X 155960604 156013934 + MGP_C3HHeJ_P0097462 Smpx protein_coding protein_coding MGP_C3HHeJ_T0097463.1 MGP_C3HHeJ_G0035889.1 mouse_genomes_project X 155960737 156013559 + MGP_C3HHeJ_P0097463 Smpx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097464.1 MGP_C3HHeJ_G0035889.1 mouse_genomes_project X 155964075 156013586 + MGP_C3HHeJ_P0097464 Smpx protein_coding protein_coding MGP_C3HHeJ_T0097465.1 MGP_C3HHeJ_G0035889.1 mouse_genomes_project X 155975750 156013556 + Smpx protein_coding retained_intron MGP_C3HHeJ_T0097466.1 MGP_C3HHeJ_G0035889.1 mouse_genomes_project X 155981867 156013628 + Smpx protein_coding retained_intron MGP_C3HHeJ_T0095658.1 MGP_C3HHeJ_G0035383.1 mouse_genomes_project X 46427506 46441581 - MGP_C3HHeJ_P0095658 Rap2c protein_coding protein_coding MGP_C3HHeJ_T0097565.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161292598 161380104 + MGP_C3HHeJ_P0097565 Ctps2 protein_coding protein_coding MGP_C3HHeJ_T0097566.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161292605 161314077 + Ctps2 protein_coding processed_transcript MGP_C3HHeJ_T0097567.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161292605 161313752 + Ctps2 protein_coding processed_transcript MGP_C3HHeJ_T0097568.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161292965 161429536 + MGP_C3HHeJ_P0097568 Ctps2 protein_coding protein_coding MGP_C3HHeJ_T0097569.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161292992 161429719 + MGP_C3HHeJ_P0097569 Ctps2 protein_coding protein_coding MGP_C3HHeJ_T0097570.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161293129 161429712 + MGP_C3HHeJ_P0097570 Ctps2 protein_coding protein_coding MGP_C3HHeJ_T0097571.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161293145 161294931 + Ctps2 protein_coding processed_transcript MGP_C3HHeJ_T0097572.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161293230 161429536 + MGP_C3HHeJ_P0097572 Ctps2 protein_coding protein_coding MGP_C3HHeJ_T0097573.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161293531 161314948 + Ctps2 protein_coding processed_transcript MGP_C3HHeJ_T0097574.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161322194 161331074 + Ctps2 protein_coding processed_transcript MGP_C3HHeJ_T0097575.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161335532 161376769 + Ctps2 protein_coding processed_transcript MGP_C3HHeJ_T0097576.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161335913 161336203 + Ctps2 protein_coding processed_transcript MGP_C3HHeJ_T0097577.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161336019 161431760 + MGP_C3HHeJ_P0097577 Ctps2 protein_coding protein_coding MGP_C3HHeJ_T0097027.1 MGP_C3HHeJ_G0035773.1 mouse_genomes_project X 133490352 133490962 + MGP_C3HHeJ_P0097027 Bex4 protein_coding protein_coding MGP_C3HHeJ_T0016516.1 MGP_C3HHeJ_G0014620.1 mouse_genomes_project X 133930967 133932455 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097410.1 MGP_C3HHeJ_G0035870.1 mouse_genomes_project X 151577323 151580668 + MGP_C3HHeJ_P0097410 Ubqln2 protein_coding protein_coding MGP_C3HHeJ_T0098223.1 MGP_C3HHeJ_G0036435.1 mouse_genomes_project X 67255669 67255787 + n-R5s8 rRNA rRNA MGP_C3HHeJ_T0016108.1 MGP_C3HHeJ_G0014212.1 mouse_genomes_project X 46653357 46654457 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016644.1 MGP_C3HHeJ_G0014748.1 mouse_genomes_project X 156434604 156435688 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016626.1 MGP_C3HHeJ_G0014730.1 mouse_genomes_project X 153400844 153401474 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096865.1 MGP_C3HHeJ_G0035717.1 mouse_genomes_project X 112055462 112056391 + MGP_C3HHeJ_P0096865 Ube2dnl2 protein_coding protein_coding MGP_C3HHeJ_T0018376.1 MGP_C3HHeJ_G0015529.1 mouse_genomes_project X 2789966 2807682 + processed_transcript processed_transcript MGP_C3HHeJ_T0016256.1 MGP_C3HHeJ_G0014360.1 mouse_genomes_project X 81600115 81600318 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101295.1 MGP_C3HHeJ_G0039391.1 mouse_genomes_project X 17601262 17602025 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101296.1 MGP_C3HHeJ_G0039391.1 mouse_genomes_project X 17601359 17601968 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0015985.1 MGP_C3HHeJ_G0014089.1 mouse_genomes_project X 3928660 3929492 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016593.1 MGP_C3HHeJ_G0014697.1 mouse_genomes_project X 144316430 144317638 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095138.1 MGP_C3HHeJ_G0035218.1 mouse_genomes_project X 2636182 2645117 - MGP_C3HHeJ_P0095138 Gata1 protein_coding protein_coding MGP_C3HHeJ_T0095139.1 MGP_C3HHeJ_G0035218.1 mouse_genomes_project X 2639370 2656106 - MGP_C3HHeJ_P0095139 Gata1 protein_coding protein_coding MGP_C3HHeJ_T0095140.1 MGP_C3HHeJ_G0035218.1 mouse_genomes_project X 2639959 2641161 - MGP_C3HHeJ_P0095140 Gata1 protein_coding protein_coding MGP_C3HHeJ_T0016211.1 MGP_C3HHeJ_G0014315.1 mouse_genomes_project X 71057655 71058039 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009275.1 MGP_C3HHeJ_G0007443.1 mouse_genomes_project X 7257788 7272985 - Gm14635 lincRNA lincRNA MGP_C3HHeJ_T0009276.1 MGP_C3HHeJ_G0007443.1 mouse_genomes_project X 7258643 7263229 - Gm14635 lincRNA lincRNA MGP_C3HHeJ_T0097684.1 MGP_C3HHeJ_G0035945.1 mouse_genomes_project X 167166002 167188655 - MGP_C3HHeJ_P0097684 Msl3 protein_coding protein_coding MGP_C3HHeJ_T0097685.1 MGP_C3HHeJ_G0035945.1 mouse_genomes_project X 167168864 167173758 - Msl3 protein_coding retained_intron MGP_C3HHeJ_T0097686.1 MGP_C3HHeJ_G0035945.1 mouse_genomes_project X 167173429 167187345 - Msl3 protein_coding retained_intron MGP_C3HHeJ_T0096817.1 MGP_C3HHeJ_G0035703.1 mouse_genomes_project X 108476323 108476677 + MGP_C3HHeJ_P0096817 Gm10112 protein_coding protein_coding MGP_C3HHeJ_T0016536.1 MGP_C3HHeJ_G0014640.1 mouse_genomes_project X 136232336 136234985 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097156.1 MGP_C3HHeJ_G0035816.1 mouse_genomes_project X 138524916 138532474 - MGP_C3HHeJ_P0097156 Psmd10 protein_coding protein_coding MGP_C3HHeJ_T0095641.1 MGP_C3HHeJ_G0035375.1 mouse_genomes_project X 45128214 45129174 + MGP_C3HHeJ_P0095641 Olfr1320 protein_coding protein_coding MGP_C3HHeJ_T0016313.1 MGP_C3HHeJ_G0014417.1 mouse_genomes_project X 91336386 91336795 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095550.1 MGP_C3HHeJ_G0035350.1 mouse_genomes_project X 37880226 37901536 + Sh2d1a protein_coding processed_transcript MGP_C3HHeJ_T0095551.1 MGP_C3HHeJ_G0035350.1 mouse_genomes_project X 37880270 37906995 + MGP_C3HHeJ_P0095551 Sh2d1a protein_coding protein_coding MGP_C3HHeJ_T0095552.1 MGP_C3HHeJ_G0035350.1 mouse_genomes_project X 37880335 37899828 + MGP_C3HHeJ_P0095552 Sh2d1a protein_coding protein_coding MGP_C3HHeJ_T0095553.1 MGP_C3HHeJ_G0035350.1 mouse_genomes_project X 37880399 37899828 + MGP_C3HHeJ_P0095553 Sh2d1a protein_coding protein_coding MGP_C3HHeJ_T0095554.1 MGP_C3HHeJ_G0035350.1 mouse_genomes_project X 37880505 37899607 + MGP_C3HHeJ_P0095554 Sh2d1a protein_coding protein_coding MGP_C3HHeJ_T0095555.1 MGP_C3HHeJ_G0035350.1 mouse_genomes_project X 37892040 37899705 + Sh2d1a protein_coding processed_transcript MGP_C3HHeJ_T0095556.1 MGP_C3HHeJ_G0035350.1 mouse_genomes_project X 37904253 37906999 + Sh2d1a protein_coding retained_intron MGP_C3HHeJ_T0016344.1 MGP_C3HHeJ_G0014448.1 mouse_genomes_project X 97476520 97476920 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096369.1 MGP_C3HHeJ_G0035574.1 mouse_genomes_project X 87403698 87404691 + MGP_C3HHeJ_P0096369 Gm44 protein_coding protein_coding MGP_C3HHeJ_T0101019.1 MGP_C3HHeJ_G0039213.1 mouse_genomes_project X 32338948 32339079 - Snora69 snoRNA snoRNA MGP_C3HHeJ_T0009313.1 MGP_C3HHeJ_G0007470.1 mouse_genomes_project X 93835859 93836674 - BC061195 lincRNA lincRNA MGP_C3HHeJ_T0011659.1 MGP_C3HHeJ_G0009792.1 mouse_genomes_project X 32327501 32327772 - Gm24809 misc_RNA misc_RNA MGP_C3HHeJ_T0016294.1 MGP_C3HHeJ_G0014398.1 mouse_genomes_project X 88570443 88574003 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095498.1 MGP_C3HHeJ_G0035340.1 mouse_genomes_project X 33935746 33950081 + Mcts1 protein_coding processed_transcript MGP_C3HHeJ_T0095499.1 MGP_C3HHeJ_G0035340.1 mouse_genomes_project X 33935823 33951674 + MGP_C3HHeJ_P0095499 Mcts1 protein_coding protein_coding MGP_C3HHeJ_T0095500.1 MGP_C3HHeJ_G0035340.1 mouse_genomes_project X 33936467 33943169 + Mcts1 protein_coding processed_transcript MGP_C3HHeJ_T0095501.1 MGP_C3HHeJ_G0035340.1 mouse_genomes_project X 33936552 33951550 + MGP_C3HHeJ_P0095501 Mcts1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095502.1 MGP_C3HHeJ_G0035340.1 mouse_genomes_project X 33946970 33951674 + Mcts1 protein_coding processed_transcript MGP_C3HHeJ_T0095503.1 MGP_C3HHeJ_G0035340.1 mouse_genomes_project X 33948050 33951648 + Mcts1 protein_coding processed_transcript MGP_C3HHeJ_T0016132.1 MGP_C3HHeJ_G0014236.1 mouse_genomes_project X 53629188 53630175 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095184.1 MGP_C3HHeJ_G0035227.1 mouse_genomes_project X 2952813 2967188 - MGP_C3HHeJ_P0095184 Ftsj1 protein_coding protein_coding MGP_C3HHeJ_T0095185.1 MGP_C3HHeJ_G0035227.1 mouse_genomes_project X 2954548 2967092 - MGP_C3HHeJ_P0095185 Ftsj1 protein_coding protein_coding MGP_C3HHeJ_T0095186.1 MGP_C3HHeJ_G0035227.1 mouse_genomes_project X 2954548 2967177 - MGP_C3HHeJ_P0095186 Ftsj1 protein_coding protein_coding MGP_C3HHeJ_T0095187.1 MGP_C3HHeJ_G0035227.1 mouse_genomes_project X 2959379 2966990 - Ftsj1 protein_coding retained_intron MGP_C3HHeJ_T0095188.1 MGP_C3HHeJ_G0035227.1 mouse_genomes_project X 2959676 2961086 - MGP_C3HHeJ_P0095188 Ftsj1 protein_coding protein_coding MGP_C3HHeJ_T0095189.1 MGP_C3HHeJ_G0035227.1 mouse_genomes_project X 2959707 2960567 - Ftsj1 protein_coding processed_transcript MGP_C3HHeJ_T0095190.1 MGP_C3HHeJ_G0035227.1 mouse_genomes_project X 2963251 2967145 - Ftsj1 protein_coding retained_intron MGP_C3HHeJ_T0095762.1 MGP_C3HHeJ_G0035422.1 mouse_genomes_project X 53360444 53367515 - MGP_C3HHeJ_P0095762 Gpr101 protein_coding protein_coding MGP_C3HHeJ_T0102342.1 MGP_C3HHeJ_G0040305.1 mouse_genomes_project X 41947436 41948207 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015961.1 MGP_C3HHeJ_G0014065.1 mouse_genomes_project X 300096 302355 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095040.1 MGP_C3HHeJ_G0035199.1 mouse_genomes_project X 2313679 2316878 - MGP_C3HHeJ_P0095040 Plp2 protein_coding protein_coding MGP_C3HHeJ_T0095041.1 MGP_C3HHeJ_G0035199.1 mouse_genomes_project X 2314817 2316801 - Plp2 protein_coding retained_intron MGP_C3HHeJ_T0016180.1 MGP_C3HHeJ_G0014284.1 mouse_genomes_project X 63755167 63755730 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095994.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70147386 70167924 - MGP_C3HHeJ_P0095994 Arhgap4 protein_coding protein_coding MGP_C3HHeJ_T0095999.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150296 70167918 - MGP_C3HHeJ_P0095999 Arhgap4 protein_coding protein_coding MGP_C3HHeJ_T0096000.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150302 70167884 - MGP_C3HHeJ_P0096000 Arhgap4 protein_coding protein_coding MGP_C3HHeJ_T0096001.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150476 70167859 - Arhgap4 protein_coding retained_intron MGP_C3HHeJ_T0096002.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150476 70167859 - Arhgap4 protein_coding retained_intron MGP_C3HHeJ_T0096003.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150476 70167859 - Arhgap4 protein_coding retained_intron MGP_C3HHeJ_T0096004.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150476 70167859 - Arhgap4 protein_coding retained_intron MGP_C3HHeJ_T0096005.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150476 70167859 - Arhgap4 protein_coding retained_intron MGP_C3HHeJ_T0096006.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150476 70167859 - MGP_C3HHeJ_P0096006 Arhgap4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096007.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150476 70167859 - MGP_C3HHeJ_P0096007 Arhgap4 protein_coding protein_coding MGP_C3HHeJ_T0096008.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150482 70167859 - MGP_C3HHeJ_P0096008 Arhgap4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096009.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150620 70167817 - MGP_C3HHeJ_P0096009 Arhgap4 protein_coding protein_coding MGP_C3HHeJ_T0096010.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70152355 70153371 - Arhgap4 protein_coding processed_transcript MGP_C3HHeJ_T0096011.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70152758 70154011 - MGP_C3HHeJ_P0096011 Arhgap4 protein_coding protein_coding MGP_C3HHeJ_T0096012.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70152815 70155571 - MGP_C3HHeJ_P0096012 Arhgap4 protein_coding protein_coding MGP_C3HHeJ_T0096013.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70155257 70179757 - Arhgap4 protein_coding retained_intron MGP_C3HHeJ_T0096014.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70155261 70156683 - Arhgap4 protein_coding processed_transcript MGP_C3HHeJ_T0096015.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70156053 70162246 - MGP_C3HHeJ_P0096015 Arhgap4 protein_coding protein_coding MGP_C3HHeJ_T0096016.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70162974 70167886 - Arhgap4 protein_coding processed_transcript MGP_C3HHeJ_T0096017.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70163367 70167881 - MGP_C3HHeJ_P0096017 Arhgap4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0016189.1 MGP_C3HHeJ_G0014293.1 mouse_genomes_project X 64965002 64965858 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101040.1 MGP_C3HHeJ_G0039234.1 mouse_genomes_project X 101224274 101224412 - Gm22266 snoRNA snoRNA MGP_C3HHeJ_T0098232.1 MGP_C3HHeJ_G0036444.1 mouse_genomes_project X 153776145 153776264 + n-R5s16 rRNA rRNA MGP_C3HHeJ_T0005531.1 MGP_C3HHeJ_G0004653.1 mouse_genomes_project X 100538683 100593905 + Tsix antisense antisense MGP_C3HHeJ_T0009344.1 MGP_C3HHeJ_G0007488.1 mouse_genomes_project X 148230257 148250927 - Gm15104 lincRNA lincRNA MGP_C3HHeJ_T0009345.1 MGP_C3HHeJ_G0007488.1 mouse_genomes_project X 148230607 148231021 - Gm15104 lincRNA lincRNA MGP_C3HHeJ_T0009340.1 MGP_C3HHeJ_G0007484.1 mouse_genomes_project X 130920306 130938759 + Gm26851 lincRNA lincRNA MGP_C3HHeJ_T0095789.1 MGP_C3HHeJ_G0035430.1 mouse_genomes_project X 56829518 56831583 - MGP_C3HHeJ_P0095789 Sox3 protein_coding protein_coding MGP_C3HHeJ_T0005508.1 MGP_C3HHeJ_G0004634.1 mouse_genomes_project X 48037258 48081437 + A630012P03Rik antisense antisense MGP_C3HHeJ_T0005509.1 MGP_C3HHeJ_G0004634.1 mouse_genomes_project X 48037258 48081437 + A630012P03Rik antisense antisense MGP_C3HHeJ_T0016219.1 MGP_C3HHeJ_G0014323.1 mouse_genomes_project X 72367582 72368004 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099753.1 MGP_C3HHeJ_G0037947.1 mouse_genomes_project X 31596286 31596390 + Gm25047 snRNA snRNA MGP_C3HHeJ_T0011109.1 MGP_C3HHeJ_G0009242.1 mouse_genomes_project X 102550453 102550541 - Mir384 miRNA miRNA MGP_C3HHeJ_T0101042.1 MGP_C3HHeJ_G0039236.1 mouse_genomes_project X 111065666 111065790 - Gm23985 snoRNA snoRNA MGP_C3HHeJ_T0095696.1 MGP_C3HHeJ_G0035398.1 mouse_genomes_project X 49107348 49110325 - MGP_C3HHeJ_P0095696 Gm14597 protein_coding protein_coding MGP_C3HHeJ_T0016569.1 MGP_C3HHeJ_G0014673.1 mouse_genomes_project X 140397384 140397847 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016312.1 MGP_C3HHeJ_G0014416.1 mouse_genomes_project X 91325778 91326385 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095463.1 MGP_C3HHeJ_G0035323.1 mouse_genomes_project X 32456498 32457721 + MGP_C3HHeJ_P0095463 Rnf113a1 protein_coding protein_coding MGP_C3HHeJ_T0097203.1 MGP_C3HHeJ_G0035832.1 mouse_genomes_project X 141440534 141466319 - MGP_C3HHeJ_P0097203 Capn6 protein_coding protein_coding MGP_C3HHeJ_T0097204.1 MGP_C3HHeJ_G0035832.1 mouse_genomes_project X 141454970 141466237 - Capn6 protein_coding retained_intron MGP_C3HHeJ_T0096455.1 MGP_C3HHeJ_G0035600.1 mouse_genomes_project X 92952707 93031693 + MGP_C3HHeJ_P0096455 Msn protein_coding protein_coding MGP_C3HHeJ_T0096456.1 MGP_C3HHeJ_G0035600.1 mouse_genomes_project X 92952722 93013510 + Msn protein_coding processed_transcript MGP_C3HHeJ_T0096457.1 MGP_C3HHeJ_G0035600.1 mouse_genomes_project X 92952762 93011430 + Msn protein_coding processed_transcript MGP_C3HHeJ_T0095452.1 MGP_C3HHeJ_G0035317.1 mouse_genomes_project X 32301643 32303217 + MGP_C3HHeJ_P0095452 Sowahd protein_coding protein_coding MGP_C3HHeJ_T0096233.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71404381 71418225 + MGP_C3HHeJ_P0096233 Dkc1 protein_coding protein_coding MGP_C3HHeJ_T0096234.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71404580 71411072 + MGP_C3HHeJ_P0096234 Dkc1 protein_coding protein_coding MGP_C3HHeJ_T0096235.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71404613 71407415 + MGP_C3HHeJ_P0096235 Dkc1 protein_coding protein_coding MGP_C3HHeJ_T0096236.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71404626 71407325 + Dkc1 protein_coding retained_intron MGP_C3HHeJ_T0096237.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71404628 71407475 + Dkc1 protein_coding processed_transcript MGP_C3HHeJ_T0096238.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71404642 71410994 + MGP_C3HHeJ_P0096238 Dkc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096239.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71405073 71407347 + Dkc1 protein_coding retained_intron MGP_C3HHeJ_T0096240.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71408445 71415659 + Dkc1 protein_coding retained_intron MGP_C3HHeJ_T0096241.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71408580 71416691 + MGP_C3HHeJ_P0096241 Dkc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096242.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71408786 71414166 + Dkc1 protein_coding processed_transcript MGP_C3HHeJ_T0096243.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71409472 71414214 + Dkc1 protein_coding processed_transcript MGP_C3HHeJ_T0096244.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71414396 71416724 + Dkc1 protein_coding retained_intron MGP_C3HHeJ_T0016337.1 MGP_C3HHeJ_G0014441.1 mouse_genomes_project X 95812208 95812603 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096360.1 MGP_C3HHeJ_G0035569.1 mouse_genomes_project X 82643011 82649157 - MGP_C3HHeJ_P0096360 Mageb4 protein_coding protein_coding MGP_C3HHeJ_T0096361.1 MGP_C3HHeJ_G0035569.1 mouse_genomes_project X 82643013 82649157 - MGP_C3HHeJ_P0096361 Mageb4 protein_coding protein_coding MGP_C3HHeJ_T0095206.1 MGP_C3HHeJ_G0035240.1 mouse_genomes_project X 4064742 4132243 + MGP_C3HHeJ_P0095206 Lancl3 protein_coding protein_coding MGP_C3HHeJ_T0095218.1 MGP_C3HHeJ_G0035245.1 mouse_genomes_project X 4710286 4710867 + MGP_C3HHeJ_P0095218 Hypm protein_coding protein_coding MGP_C3HHeJ_T0096598.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98317744 98334209 - MGP_C3HHeJ_P0096598 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0096599.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98317744 98334076 - MGP_C3HHeJ_P0096599 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0096600.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98317744 98333159 - MGP_C3HHeJ_P0096600 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0096601.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98317744 98333275 - MGP_C3HHeJ_P0096601 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0096602.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98319339 98323095 - Zmym3 protein_coding processed_transcript MGP_C3HHeJ_T0096603.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98326604 98328280 - Zmym3 protein_coding retained_intron MGP_C3HHeJ_T0096604.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98327561 98330838 - Zmym3 protein_coding processed_transcript MGP_C3HHeJ_T0096605.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98327869 98328527 - Zmym3 protein_coding retained_intron MGP_C3HHeJ_T0096606.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98328289 98330737 - Zmym3 protein_coding retained_intron MGP_C3HHeJ_T0096607.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98328290 98333170 - MGP_C3HHeJ_P0096607 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0096608.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98328293 98334045 - MGP_C3HHeJ_P0096608 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0096609.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98328293 98333202 - MGP_C3HHeJ_P0096609 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0096610.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98328298 98333577 - MGP_C3HHeJ_P0096610 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0096611.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98328318 98333725 - MGP_C3HHeJ_P0096611 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0096612.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98328375 98330734 - Zmym3 protein_coding retained_intron MGP_C3HHeJ_T0096613.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98329547 98333190 - Zmym3 protein_coding processed_transcript MGP_C3HHeJ_T0096614.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98329634 98331051 - Zmym3 protein_coding retained_intron MGP_C3HHeJ_T0096615.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98329743 98333221 - MGP_C3HHeJ_P0096615 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0016047.1 MGP_C3HHeJ_G0014151.1 mouse_genomes_project X 19008672 19009888 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095792.1 MGP_C3HHeJ_G0035433.1 mouse_genomes_project X 58254957 58263538 + MGP_C3HHeJ_P0095792 4933402E13Rik protein_coding protein_coding MGP_C3HHeJ_T0095793.1 MGP_C3HHeJ_G0035433.1 mouse_genomes_project X 58258601 58263538 + MGP_C3HHeJ_P0095793 4933402E13Rik protein_coding protein_coding MGP_C3HHeJ_T0101303.1 MGP_C3HHeJ_G0039396.1 mouse_genomes_project X 100635628 100639553 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101304.1 MGP_C3HHeJ_G0039396.1 mouse_genomes_project X 100635637 100639975 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0016188.1 MGP_C3HHeJ_G0014292.1 mouse_genomes_project X 64818926 64819154 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096377.1 MGP_C3HHeJ_G0035581.1 mouse_genomes_project X 90017345 90019283 + Arx protein_coding retained_intron MGP_C3HHeJ_T0096378.1 MGP_C3HHeJ_G0035581.1 mouse_genomes_project X 90017396 90029220 + MGP_C3HHeJ_P0096378 Arx protein_coding protein_coding MGP_C3HHeJ_T0096379.1 MGP_C3HHeJ_G0035581.1 mouse_genomes_project X 90017410 90028925 + MGP_C3HHeJ_P0096379 Arx protein_coding protein_coding MGP_C3HHeJ_T0097187.1 MGP_C3HHeJ_G0035829.1 mouse_genomes_project X 140735286 140739990 + MGP_C3HHeJ_P0097187 Rgag1 protein_coding protein_coding MGP_C3HHeJ_T0099741.1 MGP_C3HHeJ_G0037935.1 mouse_genomes_project X 4186818 4186977 + Gm25481 snRNA snRNA MGP_C3HHeJ_T0096523.1 MGP_C3HHeJ_G0035618.1 mouse_genomes_project X 97384338 97407571 + MGP_C3HHeJ_P0096523 Igbp1 protein_coding protein_coding MGP_C3HHeJ_T0096524.1 MGP_C3HHeJ_G0035618.1 mouse_genomes_project X 97384402 97389450 + Igbp1 protein_coding retained_intron MGP_C3HHeJ_T0095198.1 MGP_C3HHeJ_G0035232.1 mouse_genomes_project X 3167434 3402251 + MGP_C3HHeJ_P0095198 protein_coding protein_coding MGP_C3HHeJ_T0016345.1 MGP_C3HHeJ_G0014449.1 mouse_genomes_project X 97951553 97951836 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016619.1 MGP_C3HHeJ_G0014723.1 mouse_genomes_project X 152340064 152340663 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095288.1 MGP_C3HHeJ_G0035263.1 mouse_genomes_project X 9189044 9189565 + MGP_C3HHeJ_P0095288 Gm14501 protein_coding protein_coding MGP_C3HHeJ_T0095173.1 MGP_C3HHeJ_G0035225.1 mouse_genomes_project X 2891645 2904089 - MGP_C3HHeJ_P0095173 Ebp protein_coding protein_coding MGP_C3HHeJ_T0095174.1 MGP_C3HHeJ_G0035225.1 mouse_genomes_project X 2891647 2893491 - Ebp protein_coding retained_intron MGP_C3HHeJ_T0095175.1 MGP_C3HHeJ_G0035225.1 mouse_genomes_project X 2893064 2903977 - MGP_C3HHeJ_P0095175 Ebp protein_coding protein_coding MGP_C3HHeJ_T0095176.1 MGP_C3HHeJ_G0035225.1 mouse_genomes_project X 2900385 2903475 - Ebp protein_coding retained_intron MGP_C3HHeJ_T0095619.1 MGP_C3HHeJ_G0035369.1 mouse_genomes_project X 44082461 44090085 + Slc25a14 protein_coding processed_transcript MGP_C3HHeJ_T0095620.1 MGP_C3HHeJ_G0035369.1 mouse_genomes_project X 44082626 44121075 + MGP_C3HHeJ_P0095620 Slc25a14 protein_coding protein_coding MGP_C3HHeJ_T0095621.1 MGP_C3HHeJ_G0035369.1 mouse_genomes_project X 44082626 44121075 + MGP_C3HHeJ_P0095621 Slc25a14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095622.1 MGP_C3HHeJ_G0035369.1 mouse_genomes_project X 44082626 44121075 + MGP_C3HHeJ_P0095622 Slc25a14 protein_coding protein_coding MGP_C3HHeJ_T0095623.1 MGP_C3HHeJ_G0035369.1 mouse_genomes_project X 44082797 44111113 + Slc25a14 protein_coding processed_transcript MGP_C3HHeJ_T0095624.1 MGP_C3HHeJ_G0035369.1 mouse_genomes_project X 44082813 44121075 + MGP_C3HHeJ_P0095624 Slc25a14 protein_coding protein_coding MGP_C3HHeJ_T0095625.1 MGP_C3HHeJ_G0035369.1 mouse_genomes_project X 44082868 44094319 + Slc25a14 protein_coding retained_intron MGP_C3HHeJ_T0095626.1 MGP_C3HHeJ_G0035369.1 mouse_genomes_project X 44083010 44121073 + MGP_C3HHeJ_P0095626 Slc25a14 protein_coding protein_coding MGP_C3HHeJ_T0101293.1 MGP_C3HHeJ_G0039390.1 mouse_genomes_project X 16492069 16501535 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101294.1 MGP_C3HHeJ_G0039390.1 mouse_genomes_project X 16492144 16494227 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0096796.1 MGP_C3HHeJ_G0035693.1 mouse_genomes_project X 105103363 105193103 + MGP_C3HHeJ_P0096796 Fam46d protein_coding protein_coding MGP_C3HHeJ_T0096797.1 MGP_C3HHeJ_G0035693.1 mouse_genomes_project X 105127250 105190753 + MGP_C3HHeJ_P0096797 Fam46d protein_coding protein_coding MGP_C3HHeJ_T0096798.1 MGP_C3HHeJ_G0035693.1 mouse_genomes_project X 105127345 105193103 + MGP_C3HHeJ_P0096798 Fam46d protein_coding protein_coding MGP_C3HHeJ_T0096799.1 MGP_C3HHeJ_G0035693.1 mouse_genomes_project X 105127345 105190594 + MGP_C3HHeJ_P0096799 Fam46d protein_coding protein_coding MGP_C3HHeJ_T0016164.1 MGP_C3HHeJ_G0014268.1 mouse_genomes_project X 59087022 59087935 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011037.1 MGP_C3HHeJ_G0009170.1 mouse_genomes_project X 19117000 19117102 + Gm25299 miRNA miRNA MGP_C3HHeJ_T0097008.1 MGP_C3HHeJ_G0035767.1 mouse_genomes_project X 133064407 133083420 + Gprasp1 protein_coding processed_transcript MGP_C3HHeJ_T0097010.1 MGP_C3HHeJ_G0035767.1 mouse_genomes_project X 133064407 133129581 + MGP_C3HHeJ_P0097010 Gprasp1 protein_coding protein_coding MGP_C3HHeJ_T0097011.1 MGP_C3HHeJ_G0035767.1 mouse_genomes_project X 133064407 133129581 + MGP_C3HHeJ_P0097011 Gprasp1 protein_coding protein_coding MGP_C3HHeJ_T0097012.1 MGP_C3HHeJ_G0035767.1 mouse_genomes_project X 133064407 133129581 + MGP_C3HHeJ_P0097012 Gprasp1 protein_coding protein_coding MGP_C3HHeJ_T0097013.1 MGP_C3HHeJ_G0035767.1 mouse_genomes_project X 133064409 133101076 + Gprasp1 protein_coding processed_transcript MGP_C3HHeJ_T0097015.1 MGP_C3HHeJ_G0035767.1 mouse_genomes_project X 133120370 133129573 + MGP_C3HHeJ_P0097015 Gprasp1 protein_coding protein_coding MGP_C3HHeJ_T0096887.1 MGP_C3HHeJ_G0035730.1 mouse_genomes_project X 125528538 125530402 + MGP_C3HHeJ_P0096887 Rbm31y protein_coding protein_coding MGP_C3HHeJ_T0102341.1 MGP_C3HHeJ_G0040304.1 mouse_genomes_project X 33702751 33704434 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011091.1 MGP_C3HHeJ_G0009224.1 mouse_genomes_project X 70283497 70283568 - Mir5132 miRNA miRNA MGP_C3HHeJ_T0095678.1 MGP_C3HHeJ_G0035390.1 mouse_genomes_project X 48269204 48277479 + MGP_C3HHeJ_P0095678 Ccdc160 protein_coding protein_coding MGP_C3HHeJ_T0009358.1 MGP_C3HHeJ_G0007495.1 mouse_genomes_project X 165067744 165071184 - Gm15226 lincRNA lincRNA MGP_C3HHeJ_T0098237.1 MGP_C3HHeJ_G0036449.1 mouse_genomes_project X 166408889 166408999 + Gm24772 rRNA rRNA MGP_C3HHeJ_T0016202.1 MGP_C3HHeJ_G0014306.1 mouse_genomes_project X 69535371 69535803 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016433.1 MGP_C3HHeJ_G0014537.1 mouse_genomes_project X 111232520 111234218 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016463.1 MGP_C3HHeJ_G0014567.1 mouse_genomes_project X 117311250 117311705 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095904.1 MGP_C3HHeJ_G0035471.1 mouse_genomes_project X 69178491 69225461 + MGP_C3HHeJ_P0095904 Zfp185 protein_coding protein_coding MGP_C3HHeJ_T0095905.1 MGP_C3HHeJ_G0035471.1 mouse_genomes_project X 69178512 69225461 + MGP_C3HHeJ_P0095905 Zfp185 protein_coding protein_coding MGP_C3HHeJ_T0095906.1 MGP_C3HHeJ_G0035471.1 mouse_genomes_project X 69179405 69188722 + MGP_C3HHeJ_P0095906 Zfp185 protein_coding protein_coding MGP_C3HHeJ_T0099760.1 MGP_C3HHeJ_G0037954.1 mouse_genomes_project X 43745437 43745541 + Gm22528 snRNA snRNA MGP_C3HHeJ_T0016191.1 MGP_C3HHeJ_G0014295.1 mouse_genomes_project X 66496807 66497731 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095673.1 MGP_C3HHeJ_G0035387.1 mouse_genomes_project X 47420082 47424159 - MGP_C3HHeJ_P0095673 1700080O16Rik protein_coding protein_coding MGP_C3HHeJ_T0095674.1 MGP_C3HHeJ_G0035387.1 mouse_genomes_project X 47420279 47422435 - MGP_C3HHeJ_P0095674 1700080O16Rik protein_coding protein_coding MGP_C3HHeJ_T0005512.1 MGP_C3HHeJ_G0004637.1 mouse_genomes_project X 56481200 56744839 + antisense antisense MGP_C3HHeJ_T0095297.1 MGP_C3HHeJ_G0035268.1 mouse_genomes_project X 11873086 11901360 - MGP_C3HHeJ_P0095297 Ndp protein_coding protein_coding MGP_C3HHeJ_T0009280.1 MGP_C3HHeJ_G0007446.1 mouse_genomes_project X 10930125 10941001 - Drr1 lincRNA lincRNA MGP_C3HHeJ_T0009281.1 MGP_C3HHeJ_G0007446.1 mouse_genomes_project X 10930125 10932800 - Drr1 lincRNA lincRNA MGP_C3HHeJ_T0018454.1 MGP_C3HHeJ_G0015553.1 mouse_genomes_project X 150347354 150425937 + processed_transcript processed_transcript MGP_C3HHeJ_T0018455.1 MGP_C3HHeJ_G0015553.1 mouse_genomes_project X 150347809 150425937 + processed_transcript processed_transcript MGP_C3HHeJ_T0018456.1 MGP_C3HHeJ_G0015553.1 mouse_genomes_project X 150347809 150385875 + processed_transcript processed_transcript MGP_C3HHeJ_T0018457.1 MGP_C3HHeJ_G0015553.1 mouse_genomes_project X 150348623 150366601 + processed_transcript processed_transcript MGP_C3HHeJ_T0018458.1 MGP_C3HHeJ_G0015553.1 mouse_genomes_project X 150385425 150425937 + processed_transcript processed_transcript MGP_C3HHeJ_T0016160.1 MGP_C3HHeJ_G0014264.1 mouse_genomes_project X 58167573 58168075 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009330.1 MGP_C3HHeJ_G0007477.1 mouse_genomes_project X 102021937 102030894 + lincRNA lincRNA MGP_C3HHeJ_T0016298.1 MGP_C3HHeJ_G0014402.1 mouse_genomes_project X 89145210 89145386 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016162.1 MGP_C3HHeJ_G0014266.1 mouse_genomes_project X 58349045 58349767 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016549.1 MGP_C3HHeJ_G0014653.1 mouse_genomes_project X 138897543 138897906 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098233.1 MGP_C3HHeJ_G0036445.1 mouse_genomes_project X 155888639 155888733 - Gm23381 rRNA rRNA MGP_C3HHeJ_T0016371.1 MGP_C3HHeJ_G0014475.1 mouse_genomes_project X 100812053 100812372 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016049.1 MGP_C3HHeJ_G0014153.1 mouse_genomes_project X 31441563 31441938 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016168.1 MGP_C3HHeJ_G0014272.1 mouse_genomes_project X 60893844 60894702 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005503.1 MGP_C3HHeJ_G0004629.1 mouse_genomes_project X 32059927 32062831 + Gm14549 antisense antisense MGP_C3HHeJ_T0101314.1 MGP_C3HHeJ_G0039403.1 mouse_genomes_project X 134501522 134501818 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0094990.1 MGP_C3HHeJ_G0035185.1 mouse_genomes_project X 791273 795684 - MGP_C3HHeJ_P0094990 Nudt10 protein_coding protein_coding MGP_C3HHeJ_T0099768.1 MGP_C3HHeJ_G0037962.1 mouse_genomes_project X 57902341 57902448 + Gm25412 snRNA snRNA MGP_C3HHeJ_T0005511.1 MGP_C3HHeJ_G0004636.1 mouse_genomes_project X 53053378 53058321 + Gm14718 antisense antisense MGP_C3HHeJ_T0016460.1 MGP_C3HHeJ_G0014564.1 mouse_genomes_project X 116517840 116518578 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011030.1 MGP_C3HHeJ_G0009163.1 mouse_genomes_project X 7803934 7804028 - Gm25063 miRNA miRNA MGP_C3HHeJ_T0016390.1 MGP_C3HHeJ_G0014494.1 mouse_genomes_project X 102922732 102923573 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096688.1 MGP_C3HHeJ_G0035658.1 mouse_genomes_project X 100312743 100314105 + MGP_C3HHeJ_P0096688 1700029P11Rik protein_coding protein_coding MGP_C3HHeJ_T0102359.1 MGP_C3HHeJ_G0040322.1 mouse_genomes_project X 82804329 82805370 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016417.1 MGP_C3HHeJ_G0014521.1 mouse_genomes_project X 109048204 109048753 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016557.1 MGP_C3HHeJ_G0014661.1 mouse_genomes_project X 139481259 139481530 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099792.1 MGP_C3HHeJ_G0037986.1 mouse_genomes_project X 110498936 110499062 - Gm24831 snRNA snRNA MGP_C3HHeJ_T0097264.1 MGP_C3HHeJ_G0035844.1 mouse_genomes_project X 148472123 148495647 + MGP_C3HHeJ_P0097264 Alas2 protein_coding protein_coding MGP_C3HHeJ_T0097265.1 MGP_C3HHeJ_G0035844.1 mouse_genomes_project X 148472207 148495631 + MGP_C3HHeJ_P0097265 Alas2 protein_coding protein_coding MGP_C3HHeJ_T0097266.1 MGP_C3HHeJ_G0035844.1 mouse_genomes_project X 148478785 148482412 + Alas2 protein_coding retained_intron MGP_C3HHeJ_T0097267.1 MGP_C3HHeJ_G0035844.1 mouse_genomes_project X 148491398 148495631 + Alas2 protein_coding processed_transcript MGP_C3HHeJ_T0099779.1 MGP_C3HHeJ_G0037973.1 mouse_genomes_project X 97899828 97899891 + Gm24577 snRNA snRNA MGP_C3HHeJ_T0096226.1 MGP_C3HHeJ_G0035527.1 mouse_genomes_project X 71218916 71236254 + MGP_C3HHeJ_P0096226 protein_coding protein_coding MGP_C3HHeJ_T0097100.1 MGP_C3HHeJ_G0035800.1 mouse_genomes_project X 136996578 137073983 + MGP_C3HHeJ_P0097100 D330045A20Rik protein_coding protein_coding MGP_C3HHeJ_T0097101.1 MGP_C3HHeJ_G0035800.1 mouse_genomes_project X 136996582 137014089 + D330045A20Rik protein_coding processed_transcript MGP_C3HHeJ_T0097102.1 MGP_C3HHeJ_G0035800.1 mouse_genomes_project X 136996582 137073983 + MGP_C3HHeJ_P0097102 D330045A20Rik protein_coding protein_coding MGP_C3HHeJ_T0016000.1 MGP_C3HHeJ_G0014104.1 mouse_genomes_project X 7597471 7597579 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095434.1 MGP_C3HHeJ_G0035312.1 mouse_genomes_project X 32040484 32043680 + MGP_C3HHeJ_P0095434 Slc25a5 protein_coding protein_coding MGP_C3HHeJ_T0095435.1 MGP_C3HHeJ_G0035312.1 mouse_genomes_project X 32042151 32043426 + Slc25a5 protein_coding retained_intron MGP_C3HHeJ_T0016051.1 MGP_C3HHeJ_G0014155.1 mouse_genomes_project X 31531642 31532138 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009364.1 MGP_C3HHeJ_G0007499.1 mouse_genomes_project X 165555251 165570620 - Gm15232 lincRNA lincRNA MGP_C3HHeJ_T0096327.1 MGP_C3HHeJ_G0035560.1 mouse_genomes_project X 77711025 77758380 - MGP_C3HHeJ_P0096327 4930595M18Rik protein_coding protein_coding MGP_C3HHeJ_T0096099.1 MGP_C3HHeJ_G0035506.1 mouse_genomes_project X 70523812 70527011 + MGP_C3HHeJ_P0096099 Emd protein_coding protein_coding MGP_C3HHeJ_T0096100.1 MGP_C3HHeJ_G0035506.1 mouse_genomes_project X 70523877 70526485 + MGP_C3HHeJ_P0096100 Emd protein_coding protein_coding MGP_C3HHeJ_T0096101.1 MGP_C3HHeJ_G0035506.1 mouse_genomes_project X 70523886 70524811 + Emd protein_coding processed_transcript MGP_C3HHeJ_T0096102.1 MGP_C3HHeJ_G0035506.1 mouse_genomes_project X 70523935 70534968 + MGP_C3HHeJ_P0096102 Emd protein_coding protein_coding MGP_C3HHeJ_T0096103.1 MGP_C3HHeJ_G0035506.1 mouse_genomes_project X 70523941 70526447 + MGP_C3HHeJ_P0096103 Emd protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097548.1 MGP_C3HHeJ_G0035908.1 mouse_genomes_project X 160785620 160950299 - MGP_C3HHeJ_P0097548 Reps2 protein_coding protein_coding MGP_C3HHeJ_T0097549.1 MGP_C3HHeJ_G0035908.1 mouse_genomes_project X 160785620 161031263 - MGP_C3HHeJ_P0097549 Reps2 protein_coding protein_coding MGP_C3HHeJ_T0097550.1 MGP_C3HHeJ_G0035908.1 mouse_genomes_project X 160785620 161031311 - MGP_C3HHeJ_P0097550 Reps2 protein_coding protein_coding MGP_C3HHeJ_T0097551.1 MGP_C3HHeJ_G0035908.1 mouse_genomes_project X 160908586 160950397 - Reps2 protein_coding processed_transcript MGP_C3HHeJ_T0097552.1 MGP_C3HHeJ_G0035908.1 mouse_genomes_project X 160928958 160936587 - Reps2 protein_coding retained_intron MGP_C3HHeJ_T0095755.1 MGP_C3HHeJ_G0035420.1 mouse_genomes_project X 53250888 53260343 - MGP_C3HHeJ_P0095755 Rbmx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095756.1 MGP_C3HHeJ_G0035420.1 mouse_genomes_project X 53253720 53260324 - MGP_C3HHeJ_P0095756 Rbmx protein_coding protein_coding MGP_C3HHeJ_T0095757.1 MGP_C3HHeJ_G0035420.1 mouse_genomes_project X 53253724 53260398 - MGP_C3HHeJ_P0095757 Rbmx protein_coding protein_coding MGP_C3HHeJ_T0095758.1 MGP_C3HHeJ_G0035420.1 mouse_genomes_project X 53254278 53260382 - MGP_C3HHeJ_P0095758 Rbmx protein_coding protein_coding MGP_C3HHeJ_T0095759.1 MGP_C3HHeJ_G0035420.1 mouse_genomes_project X 53255382 53260321 - MGP_C3HHeJ_P0095759 Rbmx protein_coding unknown_likely_coding MGP_C3HHeJ_T0095760.1 MGP_C3HHeJ_G0035420.1 mouse_genomes_project X 53257504 53260159 - MGP_C3HHeJ_P0095760 Rbmx protein_coding protein_coding MGP_C3HHeJ_T0102372.1 MGP_C3HHeJ_G0040335.1 mouse_genomes_project X 150078944 150079972 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099775.1 MGP_C3HHeJ_G0037969.1 mouse_genomes_project X 78484987 78485087 + Gm22686 snRNA snRNA MGP_C3HHeJ_T0096689.1 MGP_C3HHeJ_G0035659.1 mouse_genomes_project X 100425084 100434278 + MGP_C3HHeJ_P0096689 Cdx4 protein_coding protein_coding MGP_C3HHeJ_T0097371.1 MGP_C3HHeJ_G0035858.1 mouse_genomes_project X 150114729 150198770 + MGP_C3HHeJ_P0097371 Iqsec2 protein_coding protein_coding MGP_C3HHeJ_T0097372.1 MGP_C3HHeJ_G0035858.1 mouse_genomes_project X 150114733 150198771 + MGP_C3HHeJ_P0097372 Iqsec2 protein_coding protein_coding MGP_C3HHeJ_T0097373.1 MGP_C3HHeJ_G0035858.1 mouse_genomes_project X 150114934 150166958 + MGP_C3HHeJ_P0097373 Iqsec2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0097374.1 MGP_C3HHeJ_G0035858.1 mouse_genomes_project X 150151124 150176317 + Iqsec2 protein_coding processed_transcript MGP_C3HHeJ_T0097375.1 MGP_C3HHeJ_G0035858.1 mouse_genomes_project X 150151124 150166947 + Iqsec2 protein_coding processed_transcript MGP_C3HHeJ_T0097376.1 MGP_C3HHeJ_G0035858.1 mouse_genomes_project X 150151124 150166947 + Iqsec2 protein_coding processed_transcript MGP_C3HHeJ_T0097377.1 MGP_C3HHeJ_G0035858.1 mouse_genomes_project X 150175323 150197422 + MGP_C3HHeJ_P0097377 Iqsec2 protein_coding protein_coding MGP_C3HHeJ_T0016397.1 MGP_C3HHeJ_G0014501.1 mouse_genomes_project X 103922428 103923782 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016016.1 MGP_C3HHeJ_G0014120.1 mouse_genomes_project X 11388693 11388945 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095097.1 MGP_C3HHeJ_G0035208.1 mouse_genomes_project X 2513521 2514166 + Otud5 protein_coding processed_transcript MGP_C3HHeJ_T0095098.1 MGP_C3HHeJ_G0035208.1 mouse_genomes_project X 2513988 2550062 + MGP_C3HHeJ_P0095098 Otud5 protein_coding protein_coding MGP_C3HHeJ_T0095099.1 MGP_C3HHeJ_G0035208.1 mouse_genomes_project X 2514013 2548296 + MGP_C3HHeJ_P0095099 Otud5 protein_coding protein_coding MGP_C3HHeJ_T0095100.1 MGP_C3HHeJ_G0035208.1 mouse_genomes_project X 2514213 2548721 + MGP_C3HHeJ_P0095100 Otud5 protein_coding protein_coding MGP_C3HHeJ_T0095101.1 MGP_C3HHeJ_G0035208.1 mouse_genomes_project X 2514239 2548726 + MGP_C3HHeJ_P0095101 Otud5 protein_coding protein_coding MGP_C3HHeJ_T0095102.1 MGP_C3HHeJ_G0035208.1 mouse_genomes_project X 2514273 2550056 + MGP_C3HHeJ_P0095102 Otud5 protein_coding protein_coding MGP_C3HHeJ_T0095103.1 MGP_C3HHeJ_G0035208.1 mouse_genomes_project X 2514762 2548720 + Otud5 protein_coding retained_intron MGP_C3HHeJ_T0095104.1 MGP_C3HHeJ_G0035208.1 mouse_genomes_project X 2514763 2541401 + Otud5 protein_coding retained_intron MGP_C3HHeJ_T0095105.1 MGP_C3HHeJ_G0035208.1 mouse_genomes_project X 2527494 2541001 + Otud5 protein_coding retained_intron MGP_C3HHeJ_T0096458.1 MGP_C3HHeJ_G0035601.1 mouse_genomes_project X 93116542 93152296 - MGP_C3HHeJ_P0096458 Vsig4 protein_coding protein_coding MGP_C3HHeJ_T0096459.1 MGP_C3HHeJ_G0035601.1 mouse_genomes_project X 93119289 93152270 - Vsig4 protein_coding processed_transcript MGP_C3HHeJ_T0096870.1 MGP_C3HHeJ_G0035722.1 mouse_genomes_project X 116803045 116804210 - MGP_C3HHeJ_P0096870 protein_coding protein_coding MGP_C3HHeJ_T0096567.1 MGP_C3HHeJ_G0035629.1 mouse_genomes_project X 97991012 98128014 - MGP_C3HHeJ_P0096567 Snx12 protein_coding protein_coding MGP_C3HHeJ_T0096568.1 MGP_C3HHeJ_G0035629.1 mouse_genomes_project X 98117452 98128024 - MGP_C3HHeJ_P0096568 Snx12 protein_coding protein_coding MGP_C3HHeJ_T0096569.1 MGP_C3HHeJ_G0035629.1 mouse_genomes_project X 98117452 98128010 - MGP_C3HHeJ_P0096569 Snx12 protein_coding protein_coding MGP_C3HHeJ_T0096570.1 MGP_C3HHeJ_G0035629.1 mouse_genomes_project X 98118964 98120017 - Snx12 protein_coding processed_transcript MGP_C3HHeJ_T0096943.1 MGP_C3HHeJ_G0035745.1 mouse_genomes_project X 131716592 131732971 - MGP_C3HHeJ_P0096943 Taf7l protein_coding protein_coding MGP_C3HHeJ_T0096944.1 MGP_C3HHeJ_G0035745.1 mouse_genomes_project X 131717032 131731475 - MGP_C3HHeJ_P0096944 Taf7l protein_coding protein_coding MGP_C3HHeJ_T0096945.1 MGP_C3HHeJ_G0035745.1 mouse_genomes_project X 131726357 131731470 - Taf7l protein_coding processed_transcript MGP_C3HHeJ_T0099780.1 MGP_C3HHeJ_G0037974.1 mouse_genomes_project X 97899903 97899967 + Gm27510 snRNA snRNA MGP_C3HHeJ_T0098216.1 MGP_C3HHeJ_G0036428.1 mouse_genomes_project X 723073 723347 + n-R5s2 rRNA rRNA MGP_C3HHeJ_T0099762.1 MGP_C3HHeJ_G0037956.1 mouse_genomes_project X 52563133 52563298 + Gm26312 snRNA snRNA MGP_C3HHeJ_T0097405.1 MGP_C3HHeJ_G0035868.1 mouse_genomes_project X 151194440 151227395 + MGP_C3HHeJ_P0097405 Rragb protein_coding protein_coding MGP_C3HHeJ_T0097406.1 MGP_C3HHeJ_G0035868.1 mouse_genomes_project X 151194446 151208496 + MGP_C3HHeJ_P0097406 Rragb protein_coding protein_coding MGP_C3HHeJ_T0016042.1 MGP_C3HHeJ_G0014146.1 mouse_genomes_project X 17359670 17361639 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096509.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866691 97196336 + Eda protein_coding retained_intron MGP_C3HHeJ_T0096510.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866691 97288135 + MGP_C3HHeJ_P0096510 Eda protein_coding protein_coding MGP_C3HHeJ_T0096511.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866691 97288132 + MGP_C3HHeJ_P0096511 Eda protein_coding protein_coding MGP_C3HHeJ_T0096512.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866691 97288135 + MGP_C3HHeJ_P0096512 Eda protein_coding protein_coding MGP_C3HHeJ_T0096513.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866691 97288132 + MGP_C3HHeJ_P0096513 Eda protein_coding protein_coding MGP_C3HHeJ_T0096514.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866691 97288133 + MGP_C3HHeJ_P0096514 Eda protein_coding protein_coding MGP_C3HHeJ_T0096515.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866691 97288133 + MGP_C3HHeJ_P0096515 Eda protein_coding protein_coding MGP_C3HHeJ_T0096516.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866691 97288133 + MGP_C3HHeJ_P0096516 Eda protein_coding protein_coding MGP_C3HHeJ_T0096517.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866866 97283185 + MGP_C3HHeJ_P0096517 Eda protein_coding protein_coding MGP_C3HHeJ_T0096518.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866866 97284529 + MGP_C3HHeJ_P0096518 Eda protein_coding protein_coding MGP_C3HHeJ_T0096519.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 97271415 97281811 + Eda protein_coding processed_transcript MGP_C3HHeJ_T0096520.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 97274629 97282409 + Eda protein_coding processed_transcript MGP_C3HHeJ_T0016174.1 MGP_C3HHeJ_G0014278.1 mouse_genomes_project X 62825040 62826233 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096528.1 MGP_C3HHeJ_G0035621.1 mouse_genomes_project X 97481665 97486373 - MGP_C3HHeJ_P0096528 P2ry4 protein_coding protein_coding MGP_C3HHeJ_T0098305.1 MGP_C3HHeJ_G0036517.1 mouse_genomes_project X 93010307 93010443 - Gm24718 scaRNA scaRNA MGP_C3HHeJ_T0005494.1 MGP_C3HHeJ_G0004625.1 mouse_genomes_project X 2297902 2303033 - Gm14703 antisense antisense MGP_C3HHeJ_T0016099.1 MGP_C3HHeJ_G0014203.1 mouse_genomes_project X 44347073 44347370 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016406.1 MGP_C3HHeJ_G0014510.1 mouse_genomes_project X 105356533 105361360 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016410.1 MGP_C3HHeJ_G0014514.1 mouse_genomes_project X 106417409 106418293 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016511.1 MGP_C3HHeJ_G0014615.1 mouse_genomes_project X 133066851 133068672 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102347.1 MGP_C3HHeJ_G0040310.1 mouse_genomes_project X 71040987 71042098 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0096581.1 MGP_C3HHeJ_G0035634.1 mouse_genomes_project X 98180606 98204042 + MGP_C3HHeJ_P0096581 Med12 protein_coding protein_coding MGP_C3HHeJ_T0096582.1 MGP_C3HHeJ_G0035634.1 mouse_genomes_project X 98180805 98204042 + MGP_C3HHeJ_P0096582 Med12 protein_coding protein_coding MGP_C3HHeJ_T0096583.1 MGP_C3HHeJ_G0035634.1 mouse_genomes_project X 98180836 98204042 + MGP_C3HHeJ_P0096583 Med12 protein_coding protein_coding MGP_C3HHeJ_T0096584.1 MGP_C3HHeJ_G0035634.1 mouse_genomes_project X 98180836 98204042 + MGP_C3HHeJ_P0096584 Med12 protein_coding protein_coding MGP_C3HHeJ_T0096585.1 MGP_C3HHeJ_G0035634.1 mouse_genomes_project X 98189272 98190734 + Med12 protein_coding retained_intron MGP_C3HHeJ_T0096586.1 MGP_C3HHeJ_G0035634.1 mouse_genomes_project X 98189762 98190505 + Med12 protein_coding processed_transcript MGP_C3HHeJ_T0096587.1 MGP_C3HHeJ_G0035634.1 mouse_genomes_project X 98192600 98204042 + Med12 protein_coding retained_intron MGP_C3HHeJ_T0096588.1 MGP_C3HHeJ_G0035634.1 mouse_genomes_project X 98199710 98202644 + Med12 protein_coding processed_transcript MGP_C3HHeJ_T0096589.1 MGP_C3HHeJ_G0035634.1 mouse_genomes_project X 98203145 98203964 + Med12 protein_coding processed_transcript MGP_C3HHeJ_T0018402.1 MGP_C3HHeJ_G0015538.1 mouse_genomes_project X 49246146 49247485 - processed_transcript TEC MGP_C3HHeJ_T0018403.1 MGP_C3HHeJ_G0015538.1 mouse_genomes_project X 49247159 49263514 - processed_transcript lincRNA MGP_C3HHeJ_T0101038.1 MGP_C3HHeJ_G0039232.1 mouse_genomes_project X 91228361 91228471 - Gm24595 snoRNA snoRNA MGP_C3HHeJ_T0016244.1 MGP_C3HHeJ_G0014348.1 mouse_genomes_project X 76517296 76517455 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095914.1 MGP_C3HHeJ_G0035478.1 mouse_genomes_project X 69570250 69586675 + MGP_C3HHeJ_P0095914 Zfp275 protein_coding protein_coding MGP_C3HHeJ_T0095915.1 MGP_C3HHeJ_G0035478.1 mouse_genomes_project X 69572054 69579433 + Zfp275 protein_coding retained_intron MGP_C3HHeJ_T0096707.1 MGP_C3HHeJ_G0035670.1 mouse_genomes_project X 102046966 102049282 - MGP_C3HHeJ_P0096707 Magee2 protein_coding protein_coding MGP_C3HHeJ_T0016509.1 MGP_C3HHeJ_G0014613.1 mouse_genomes_project X 132524341 132525087 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095902.1 MGP_C3HHeJ_G0035470.1 mouse_genomes_project X 69116999 69144256 + MGP_C3HHeJ_P0095902 Nsdhl protein_coding protein_coding MGP_C3HHeJ_T0095903.1 MGP_C3HHeJ_G0035470.1 mouse_genomes_project X 69128742 69139394 + Nsdhl protein_coding retained_intron MGP_C3HHeJ_T0096693.1 MGP_C3HHeJ_G0035663.1 mouse_genomes_project X 100753902 100754987 + MGP_C3HHeJ_P0096693 Zcchc13 protein_coding protein_coding MGP_C3HHeJ_T0015970.1 MGP_C3HHeJ_G0014074.1 mouse_genomes_project X 2415745 2416041 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016314.1 MGP_C3HHeJ_G0014418.1 mouse_genomes_project X 91383124 91383602 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099778.1 MGP_C3HHeJ_G0037972.1 mouse_genomes_project X 95659061 95659168 + Gm26000 snRNA snRNA MGP_C3HHeJ_T0016464.1 MGP_C3HHeJ_G0014568.1 mouse_genomes_project X 117490087 117490340 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095746.1 MGP_C3HHeJ_G0035418.1 mouse_genomes_project X 53066065 53078672 + MGP_C3HHeJ_P0095746 Cd40lg protein_coding protein_coding MGP_C3HHeJ_T0099750.1 MGP_C3HHeJ_G0037944.1 mouse_genomes_project X 15915370 15915475 - Gm26065 snRNA snRNA MGP_C3HHeJ_T0095684.1 MGP_C3HHeJ_G0035393.1 mouse_genomes_project X 48565105 48740472 - MGP_C3HHeJ_P0095684 Plac1 protein_coding protein_coding MGP_C3HHeJ_T0095685.1 MGP_C3HHeJ_G0035393.1 mouse_genomes_project X 48565106 48611325 - MGP_C3HHeJ_P0095685 Plac1 protein_coding protein_coding MGP_C3HHeJ_T0095686.1 MGP_C3HHeJ_G0035393.1 mouse_genomes_project X 48565282 48707235 - MGP_C3HHeJ_P0095686 Plac1 protein_coding protein_coding MGP_C3HHeJ_T0097637.1 MGP_C3HHeJ_G0035932.1 mouse_genomes_project X 163573383 163784036 - MGP_C3HHeJ_P0097637 Glra2 protein_coding protein_coding MGP_C3HHeJ_T0095462.1 MGP_C3HHeJ_G0035322.1 mouse_genomes_project X 32448784 32456417 - MGP_C3HHeJ_P0095462 Ndufa1 protein_coding protein_coding MGP_C3HHeJ_T0015974.1 MGP_C3HHeJ_G0014078.1 mouse_genomes_project X 2722868 2723736 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095714.1 MGP_C3HHeJ_G0035409.1 mouse_genomes_project X 52372152 52378030 - MGP_C3HHeJ_P0095714 Gm648 protein_coding protein_coding MGP_C3HHeJ_T0097605.1 MGP_C3HHeJ_G0035923.1 mouse_genomes_project X 162620742 162686775 - MGP_C3HHeJ_P0097605 Bmx protein_coding protein_coding MGP_C3HHeJ_T0097606.1 MGP_C3HHeJ_G0035923.1 mouse_genomes_project X 162621255 162678963 - MGP_C3HHeJ_P0097606 Bmx protein_coding protein_coding MGP_C3HHeJ_T0095791.1 MGP_C3HHeJ_G0035432.1 mouse_genomes_project X 57671907 57673366 + MGP_C3HHeJ_P0095791 Ldoc1 protein_coding protein_coding MGP_C3HHeJ_T0095177.1 MGP_C3HHeJ_G0035226.1 mouse_genomes_project X 2904424 2917397 - MGP_C3HHeJ_P0095177 Porcn protein_coding protein_coding MGP_C3HHeJ_T0095178.1 MGP_C3HHeJ_G0035226.1 mouse_genomes_project X 2904425 2917363 - MGP_C3HHeJ_P0095178 Porcn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095179.1 MGP_C3HHeJ_G0035226.1 mouse_genomes_project X 2904426 2917373 - MGP_C3HHeJ_P0095179 Porcn protein_coding protein_coding MGP_C3HHeJ_T0095180.1 MGP_C3HHeJ_G0035226.1 mouse_genomes_project X 2904426 2917373 - MGP_C3HHeJ_P0095180 Porcn protein_coding protein_coding MGP_C3HHeJ_T0095181.1 MGP_C3HHeJ_G0035226.1 mouse_genomes_project X 2904426 2917373 - MGP_C3HHeJ_P0095181 Porcn protein_coding protein_coding MGP_C3HHeJ_T0095182.1 MGP_C3HHeJ_G0035226.1 mouse_genomes_project X 2904429 2917369 - MGP_C3HHeJ_P0095182 Porcn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095183.1 MGP_C3HHeJ_G0035226.1 mouse_genomes_project X 2914310 2917385 - Porcn protein_coding retained_intron MGP_C3HHeJ_T0096625.1 MGP_C3HHeJ_G0035640.1 mouse_genomes_project X 98457129 98526471 + MGP_C3HHeJ_P0096625 Taf1 protein_coding protein_coding MGP_C3HHeJ_T0096626.1 MGP_C3HHeJ_G0035640.1 mouse_genomes_project X 98457136 98527525 + MGP_C3HHeJ_P0096626 Taf1 protein_coding protein_coding MGP_C3HHeJ_T0096627.1 MGP_C3HHeJ_G0035640.1 mouse_genomes_project X 98457154 98526471 + MGP_C3HHeJ_P0096627 Taf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096628.1 MGP_C3HHeJ_G0035640.1 mouse_genomes_project X 98457154 98474132 + MGP_C3HHeJ_P0096628 Taf1 protein_coding protein_coding MGP_C3HHeJ_T0096629.1 MGP_C3HHeJ_G0035640.1 mouse_genomes_project X 98481242 98526471 + Taf1 protein_coding retained_intron MGP_C3HHeJ_T0096630.1 MGP_C3HHeJ_G0035640.1 mouse_genomes_project X 98515983 98526008 + Taf1 protein_coding processed_transcript MGP_C3HHeJ_T0016297.1 MGP_C3HHeJ_G0014401.1 mouse_genomes_project X 88704430 88705092 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097016.1 MGP_C3HHeJ_G0035769.1 mouse_genomes_project X 133165839 133175995 + MGP_C3HHeJ_P0097016 Gprasp2 protein_coding protein_coding MGP_C3HHeJ_T0097017.1 MGP_C3HHeJ_G0035769.1 mouse_genomes_project X 133165861 133175991 + MGP_C3HHeJ_P0097017 Gprasp2 protein_coding protein_coding MGP_C3HHeJ_T0097018.1 MGP_C3HHeJ_G0035769.1 mouse_genomes_project X 133165896 133171458 + Gprasp2 protein_coding processed_transcript MGP_C3HHeJ_T0097019.1 MGP_C3HHeJ_G0035769.1 mouse_genomes_project X 133165909 133171335 + Gprasp2 protein_coding processed_transcript MGP_C3HHeJ_T0011124.1 MGP_C3HHeJ_G0009257.1 mouse_genomes_project X 144712386 144712491 + Gm22650 miRNA miRNA MGP_C3HHeJ_T0097188.1 MGP_C3HHeJ_G0035830.1 mouse_genomes_project X 140916884 141024037 - MGP_C3HHeJ_P0097188 Chrdl1 protein_coding protein_coding MGP_C3HHeJ_T0097189.1 MGP_C3HHeJ_G0035830.1 mouse_genomes_project X 140916894 141028200 - MGP_C3HHeJ_P0097189 Chrdl1 protein_coding protein_coding MGP_C3HHeJ_T0097190.1 MGP_C3HHeJ_G0035830.1 mouse_genomes_project X 140928376 141027818 - MGP_C3HHeJ_P0097190 Chrdl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0097191.1 MGP_C3HHeJ_G0035830.1 mouse_genomes_project X 140928384 141028122 - MGP_C3HHeJ_P0097191 Chrdl1 protein_coding protein_coding MGP_C3HHeJ_T0097192.1 MGP_C3HHeJ_G0035830.1 mouse_genomes_project X 140928386 141027834 - MGP_C3HHeJ_P0097192 Chrdl1 protein_coding protein_coding MGP_C3HHeJ_T0097232.1 MGP_C3HHeJ_G0035838.1 mouse_genomes_project X 143129273 143189615 - MGP_C3HHeJ_P0097232 Amot protein_coding protein_coding MGP_C3HHeJ_T0097233.1 MGP_C3HHeJ_G0035838.1 mouse_genomes_project X 143134672 143171718 - MGP_C3HHeJ_P0097233 Amot protein_coding protein_coding MGP_C3HHeJ_T0097234.1 MGP_C3HHeJ_G0035838.1 mouse_genomes_project X 143142552 143144717 - Amot protein_coding retained_intron MGP_C3HHeJ_T0097235.1 MGP_C3HHeJ_G0035838.1 mouse_genomes_project X 143158497 143189875 - MGP_C3HHeJ_P0097235 Amot protein_coding protein_coding MGP_C3HHeJ_T0016043.1 MGP_C3HHeJ_G0014147.1 mouse_genomes_project X 17440288 17440763 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016568.1 MGP_C3HHeJ_G0014672.1 mouse_genomes_project X 140238137 140238548 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016478.1 MGP_C3HHeJ_G0014582.1 mouse_genomes_project X 124042034 124044071 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016148.1 MGP_C3HHeJ_G0014252.1 mouse_genomes_project X 56755550 56756125 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095121.1 MGP_C3HHeJ_G0035212.1 mouse_genomes_project X 2572848 2583380 + MGP_C3HHeJ_P0095121 Timm17b protein_coding protein_coding MGP_C3HHeJ_T0095122.1 MGP_C3HHeJ_G0035212.1 mouse_genomes_project X 2573162 2580621 + MGP_C3HHeJ_P0095122 Timm17b protein_coding protein_coding MGP_C3HHeJ_T0095123.1 MGP_C3HHeJ_G0035212.1 mouse_genomes_project X 2580404 2581999 + Timm17b protein_coding retained_intron MGP_C3HHeJ_T0095763.1 MGP_C3HHeJ_G0035423.1 mouse_genomes_project X 53908026 53917872 + MGP_C3HHeJ_P0095763 Zic3 protein_coding protein_coding MGP_C3HHeJ_T0095764.1 MGP_C3HHeJ_G0035423.1 mouse_genomes_project X 53917066 53922983 + MGP_C3HHeJ_P0095764 Zic3 protein_coding protein_coding MGP_C3HHeJ_T0095765.1 MGP_C3HHeJ_G0035423.1 mouse_genomes_project X 53917422 53922983 + MGP_C3HHeJ_P0095765 Zic3 protein_coding protein_coding MGP_C3HHeJ_T0095766.1 MGP_C3HHeJ_G0035423.1 mouse_genomes_project X 53917433 53928158 + MGP_C3HHeJ_P0095766 Zic3 protein_coding protein_coding MGP_C3HHeJ_T0016275.1 MGP_C3HHeJ_G0014379.1 mouse_genomes_project X 85204584 85204776 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015980.1 MGP_C3HHeJ_G0014084.1 mouse_genomes_project X 3752705 3754202 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018398.1 MGP_C3HHeJ_G0015537.1 mouse_genomes_project X 48549458 48551603 - C430049B03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018399.1 MGP_C3HHeJ_G0015537.1 mouse_genomes_project X 48549619 48551573 - C430049B03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018400.1 MGP_C3HHeJ_G0015537.1 mouse_genomes_project X 48550182 48551601 - C430049B03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018401.1 MGP_C3HHeJ_G0015537.1 mouse_genomes_project X 48550605 48551603 - C430049B03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016395.1 MGP_C3HHeJ_G0014499.1 mouse_genomes_project X 103892693 103892986 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016487.1 MGP_C3HHeJ_G0014591.1 mouse_genomes_project X 127658964 127659640 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096708.1 MGP_C3HHeJ_G0035671.1 mouse_genomes_project X 102285003 102290434 + MGP_C3HHeJ_P0096708 Pbdc1 protein_coding protein_coding MGP_C3HHeJ_T0096709.1 MGP_C3HHeJ_G0035671.1 mouse_genomes_project X 102285008 102323503 + MGP_C3HHeJ_P0096709 Pbdc1 protein_coding protein_coding MGP_C3HHeJ_T0096710.1 MGP_C3HHeJ_G0035671.1 mouse_genomes_project X 102285022 102288408 + Pbdc1 protein_coding retained_intron MGP_C3HHeJ_T0016261.1 MGP_C3HHeJ_G0014365.1 mouse_genomes_project X 82173876 82174313 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016295.1 MGP_C3HHeJ_G0014399.1 mouse_genomes_project X 88621349 88622384 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096752.1 MGP_C3HHeJ_G0035679.1 mouse_genomes_project X 103364000 103364419 + Tlr13 protein_coding retained_intron MGP_C3HHeJ_T0096753.1 MGP_C3HHeJ_G0035679.1 mouse_genomes_project X 103364025 103382233 + MGP_C3HHeJ_P0096753 Tlr13 protein_coding protein_coding MGP_C3HHeJ_T0016057.1 MGP_C3HHeJ_G0014161.1 mouse_genomes_project X 34100854 34101148 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096268.1 MGP_C3HHeJ_G0035538.1 mouse_genomes_project X 71753879 71759977 - MGP_C3HHeJ_P0096268 Mtcp1 protein_coding protein_coding MGP_C3HHeJ_T0096269.1 MGP_C3HHeJ_G0035538.1 mouse_genomes_project X 71754085 71759852 - Mtcp1 protein_coding processed_transcript MGP_C3HHeJ_T0096270.1 MGP_C3HHeJ_G0035538.1 mouse_genomes_project X 71754212 71760022 - MGP_C3HHeJ_P0096270 Mtcp1 protein_coding protein_coding MGP_C3HHeJ_T0096271.1 MGP_C3HHeJ_G0035538.1 mouse_genomes_project X 71756607 71760002 - Mtcp1 protein_coding retained_intron MGP_C3HHeJ_T0002441.1 MGP_C3HHeJ_G0002359.1 mouse_genomes_project X 69633405 69634661 + TEC TEC MGP_C3HHeJ_T0101059.1 MGP_C3HHeJ_G0039253.1 mouse_genomes_project X 144707386 144707514 + Snora35 snoRNA snoRNA MGP_C3HHeJ_T0097028.1 MGP_C3HHeJ_G0035774.1 mouse_genomes_project X 133521613 133524869 - MGP_C3HHeJ_P0097028 Tceal8 protein_coding protein_coding MGP_C3HHeJ_T0097029.1 MGP_C3HHeJ_G0035774.1 mouse_genomes_project X 133522710 133524960 - MGP_C3HHeJ_P0097029 Tceal8 protein_coding protein_coding MGP_C3HHeJ_T0097030.1 MGP_C3HHeJ_G0035774.1 mouse_genomes_project X 133523514 133524834 - MGP_C3HHeJ_P0097030 Tceal8 protein_coding protein_coding MGP_C3HHeJ_T0097031.1 MGP_C3HHeJ_G0035774.1 mouse_genomes_project X 133523618 133524819 - MGP_C3HHeJ_P0097031 Tceal8 protein_coding protein_coding MGP_C3HHeJ_T0096229.1 MGP_C3HHeJ_G0035530.1 mouse_genomes_project X 71267708 71268819 + MGP_C3HHeJ_P0096229 protein_coding protein_coding MGP_C3HHeJ_T0009312.1 MGP_C3HHeJ_G0007469.1 mouse_genomes_project X 92597523 92598312 - 1700010D01Rik lincRNA lincRNA MGP_C3HHeJ_T0095285.1 MGP_C3HHeJ_G0035262.1 mouse_genomes_project X 8625106 8631187 + MGP_C3HHeJ_P0095285 Gpr82 protein_coding protein_coding MGP_C3HHeJ_T0016658.1 MGP_C3HHeJ_G0014762.1 mouse_genomes_project X 158627083 158627565 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016347.1 MGP_C3HHeJ_G0014451.1 mouse_genomes_project X 98400850 98401062 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097667.1 MGP_C3HHeJ_G0035941.1 mouse_genomes_project X 165712144 165730820 - MGP_C3HHeJ_P0097667 Tlr8 protein_coding protein_coding MGP_C3HHeJ_T0097668.1 MGP_C3HHeJ_G0035941.1 mouse_genomes_project X 165712180 165730322 - MGP_C3HHeJ_P0097668 Tlr8 protein_coding protein_coding MGP_C3HHeJ_T0097669.1 MGP_C3HHeJ_G0035941.1 mouse_genomes_project X 165714267 165730833 - Tlr8 protein_coding processed_transcript MGP_C3HHeJ_T0097670.1 MGP_C3HHeJ_G0035941.1 mouse_genomes_project X 165714991 165730863 - MGP_C3HHeJ_P0097670 Tlr8 protein_coding protein_coding MGP_C3HHeJ_T0097671.1 MGP_C3HHeJ_G0035941.1 mouse_genomes_project X 165725886 165730818 - Tlr8 protein_coding processed_transcript MGP_C3HHeJ_T0016060.1 MGP_C3HHeJ_G0014164.1 mouse_genomes_project X 34465774 34466030 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096367.1 MGP_C3HHeJ_G0035572.1 mouse_genomes_project X 86237358 86240582 + MGP_C3HHeJ_P0096367 4932429P05Rik protein_coding protein_coding MGP_C3HHeJ_T0097657.1 MGP_C3HHeJ_G0035937.1 mouse_genomes_project X 164902271 164923863 - MGP_C3HHeJ_P0097657 Rab9 protein_coding protein_coding MGP_C3HHeJ_T0097658.1 MGP_C3HHeJ_G0035937.1 mouse_genomes_project X 164902768 164923642 - MGP_C3HHeJ_P0097658 Rab9 protein_coding protein_coding MGP_C3HHeJ_T0097659.1 MGP_C3HHeJ_G0035937.1 mouse_genomes_project X 164903171 164919431 - MGP_C3HHeJ_P0097659 Rab9 protein_coding protein_coding MGP_C3HHeJ_T0005522.1 MGP_C3HHeJ_G0004646.1 mouse_genomes_project X 82123313 82129780 + Gm14764 antisense antisense MGP_C3HHeJ_T0016111.1 MGP_C3HHeJ_G0014215.1 mouse_genomes_project X 46673345 46674034 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095470.1 MGP_C3HHeJ_G0035329.1 mouse_genomes_project X 33162607 33165152 - MGP_C3HHeJ_P0095470 protein_coding protein_coding MGP_C3HHeJ_T0099758.1 MGP_C3HHeJ_G0037952.1 mouse_genomes_project X 41208191 41208298 - Gm25078 snRNA snRNA MGP_C3HHeJ_T0096712.1 MGP_C3HHeJ_G0035673.1 mouse_genomes_project X 102725083 102725951 + MGP_C3HHeJ_P0096712 Cypt2 protein_coding protein_coding MGP_C3HHeJ_T0098220.1 MGP_C3HHeJ_G0036432.1 mouse_genomes_project X 16856888 16856967 + Gm25553 rRNA rRNA MGP_C3HHeJ_T0102368.1 MGP_C3HHeJ_G0040331.1 mouse_genomes_project X 133050085 133052326 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095872.1 MGP_C3HHeJ_G0035458.1 mouse_genomes_project X 67841150 67846714 + MGP_C3HHeJ_P0095872 Gpr50 protein_coding protein_coding MGP_C3HHeJ_T0095873.1 MGP_C3HHeJ_G0035458.1 mouse_genomes_project X 67841449 67844849 + Gpr50 protein_coding processed_transcript MGP_C3HHeJ_T0095874.1 MGP_C3HHeJ_G0035458.1 mouse_genomes_project X 67841449 67844849 + Gpr50 protein_coding processed_transcript MGP_C3HHeJ_T0096669.1 MGP_C3HHeJ_G0035652.1 mouse_genomes_project X 99483626 99615213 - MGP_C3HHeJ_P0096669 Phka1 protein_coding protein_coding MGP_C3HHeJ_T0096670.1 MGP_C3HHeJ_G0035652.1 mouse_genomes_project X 99483626 99615213 - MGP_C3HHeJ_P0096670 Phka1 protein_coding protein_coding MGP_C3HHeJ_T0096671.1 MGP_C3HHeJ_G0035652.1 mouse_genomes_project X 99483626 99615213 - MGP_C3HHeJ_P0096671 Phka1 protein_coding protein_coding MGP_C3HHeJ_T0096672.1 MGP_C3HHeJ_G0035652.1 mouse_genomes_project X 99483626 99615213 - MGP_C3HHeJ_P0096672 Phka1 protein_coding protein_coding MGP_C3HHeJ_T0096673.1 MGP_C3HHeJ_G0035652.1 mouse_genomes_project X 99483626 99615213 - MGP_C3HHeJ_P0096673 Phka1 protein_coding protein_coding MGP_C3HHeJ_T0096674.1 MGP_C3HHeJ_G0035652.1 mouse_genomes_project X 99483626 99615213 - MGP_C3HHeJ_P0096674 Phka1 protein_coding protein_coding MGP_C3HHeJ_T0096675.1 MGP_C3HHeJ_G0035652.1 mouse_genomes_project X 99524321 99615213 - Phka1 protein_coding retained_intron MGP_C3HHeJ_T0101062.1 MGP_C3HHeJ_G0039256.1 mouse_genomes_project X 149483362 149483468 - Gm24460 snoRNA snoRNA MGP_C3HHeJ_T0096475.1 MGP_C3HHeJ_G0035606.1 mouse_genomes_project X 93943533 93953006 + MGP_C3HHeJ_P0096475 Pgr15l protein_coding protein_coding MGP_C3HHeJ_T0097291.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148718457 148726433 - MGP_C3HHeJ_P0097291 Maged2 protein_coding protein_coding MGP_C3HHeJ_T0097292.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148718508 148725056 - Maged2 protein_coding retained_intron MGP_C3HHeJ_T0097293.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148718508 148725795 - MGP_C3HHeJ_P0097293 Maged2 protein_coding protein_coding MGP_C3HHeJ_T0097294.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148718511 148726357 - MGP_C3HHeJ_P0097294 Maged2 protein_coding protein_coding MGP_C3HHeJ_T0097295.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148718804 148724803 - MGP_C3HHeJ_P0097295 Maged2 protein_coding protein_coding MGP_C3HHeJ_T0097296.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148722961 148725166 - MGP_C3HHeJ_P0097296 Maged2 protein_coding protein_coding MGP_C3HHeJ_T0097297.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148722978 148725242 - MGP_C3HHeJ_P0097297 Maged2 protein_coding protein_coding MGP_C3HHeJ_T0097298.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148723187 148724549 - Maged2 protein_coding processed_transcript MGP_C3HHeJ_T0097299.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148723225 148726369 - MGP_C3HHeJ_P0097299 Maged2 protein_coding protein_coding MGP_C3HHeJ_T0097300.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148723962 148725046 - MGP_C3HHeJ_P0097300 Maged2 protein_coding protein_coding MGP_C3HHeJ_T0005513.1 MGP_C3HHeJ_G0004638.1 mouse_genomes_project X 56831805 56836204 + Gm14662 antisense antisense MGP_C3HHeJ_T0097599.1 MGP_C3HHeJ_G0035921.1 mouse_genomes_project X 162512563 162544793 + MGP_C3HHeJ_P0097599 Tmem27 protein_coding protein_coding MGP_C3HHeJ_T0097600.1 MGP_C3HHeJ_G0035921.1 mouse_genomes_project X 162513914 162544792 + MGP_C3HHeJ_P0097600 Tmem27 protein_coding protein_coding MGP_C3HHeJ_T0097601.1 MGP_C3HHeJ_G0035921.1 mouse_genomes_project X 162515912 162544147 + MGP_C3HHeJ_P0097601 Tmem27 protein_coding protein_coding MGP_C3HHeJ_T0016653.1 MGP_C3HHeJ_G0014757.1 mouse_genomes_project X 157887326 157887602 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097074.1 MGP_C3HHeJ_G0035791.1 mouse_genomes_project X 134626443 134631430 - MGP_C3HHeJ_P0097074 Esx1 protein_coding protein_coding MGP_C3HHeJ_T0097075.1 MGP_C3HHeJ_G0035791.1 mouse_genomes_project X 134626443 134631275 - MGP_C3HHeJ_P0097075 Esx1 protein_coding protein_coding MGP_C3HHeJ_T0097076.1 MGP_C3HHeJ_G0035791.1 mouse_genomes_project X 134629160 134633317 - MGP_C3HHeJ_P0097076 Esx1 protein_coding protein_coding MGP_C3HHeJ_T0095830.1 MGP_C3HHeJ_G0035449.1 mouse_genomes_project X 66399782 66425845 - MGP_C3HHeJ_P0095830 Ids protein_coding protein_coding MGP_C3HHeJ_T0095831.1 MGP_C3HHeJ_G0035449.1 mouse_genomes_project X 66411830 66421851 - MGP_C3HHeJ_P0095831 Ids protein_coding protein_coding MGP_C3HHeJ_T0097178.1 MGP_C3HHeJ_G0035826.1 mouse_genomes_project X 139918539 139999071 - MGP_C3HHeJ_P0097178 Acsl4 protein_coding protein_coding MGP_C3HHeJ_T0097179.1 MGP_C3HHeJ_G0035826.1 mouse_genomes_project X 139918539 139999262 - MGP_C3HHeJ_P0097179 Acsl4 protein_coding protein_coding MGP_C3HHeJ_T0097180.1 MGP_C3HHeJ_G0035826.1 mouse_genomes_project X 139918539 139999231 - MGP_C3HHeJ_P0097180 Acsl4 protein_coding protein_coding MGP_C3HHeJ_T0097181.1 MGP_C3HHeJ_G0035826.1 mouse_genomes_project X 139918539 139999231 - MGP_C3HHeJ_P0097181 Acsl4 protein_coding protein_coding MGP_C3HHeJ_T0097182.1 MGP_C3HHeJ_G0035826.1 mouse_genomes_project X 139921216 139935240 - Acsl4 protein_coding processed_transcript MGP_C3HHeJ_T0015999.1 MGP_C3HHeJ_G0014103.1 mouse_genomes_project X 7578316 7578676 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095007.1 MGP_C3HHeJ_G0035193.1 mouse_genomes_project X 2202224 2219147 - MGP_C3HHeJ_P0095007 Ppp1r3f protein_coding protein_coding MGP_C3HHeJ_T0095008.1 MGP_C3HHeJ_G0035193.1 mouse_genomes_project X 2203880 2219112 - MGP_C3HHeJ_P0095008 Ppp1r3f protein_coding protein_coding MGP_C3HHeJ_T0095009.1 MGP_C3HHeJ_G0035193.1 mouse_genomes_project X 2204150 2209116 - Ppp1r3f protein_coding processed_transcript MGP_C3HHeJ_T0095010.1 MGP_C3HHeJ_G0035193.1 mouse_genomes_project X 2205170 2217707 - MGP_C3HHeJ_P0095010 Ppp1r3f protein_coding protein_coding MGP_C3HHeJ_T0095011.1 MGP_C3HHeJ_G0035193.1 mouse_genomes_project X 2207158 2209147 - Ppp1r3f protein_coding processed_transcript MGP_C3HHeJ_T0009274.1 MGP_C3HHeJ_G0007442.1 mouse_genomes_project X 5596289 5607559 - Gm10489 lincRNA lincRNA MGP_C3HHeJ_T0011690.1 MGP_C3HHeJ_G0009823.1 mouse_genomes_project X 161079989 161080304 + Gm25557 misc_RNA misc_RNA MGP_C3HHeJ_T0016483.1 MGP_C3HHeJ_G0014587.1 mouse_genomes_project X 126644718 126645720 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011092.1 MGP_C3HHeJ_G0009225.1 mouse_genomes_project X 70283818 70283906 - Mir718 miRNA miRNA MGP_C3HHeJ_T0096664.1 MGP_C3HHeJ_G0035651.1 mouse_genomes_project X 99250245 99474876 - MGP_C3HHeJ_P0096664 Hdac8 protein_coding protein_coding MGP_C3HHeJ_T0096665.1 MGP_C3HHeJ_G0035651.1 mouse_genomes_project X 99375261 99474598 - MGP_C3HHeJ_P0096665 Hdac8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096666.1 MGP_C3HHeJ_G0035651.1 mouse_genomes_project X 99377216 99474663 - Hdac8 protein_coding processed_transcript MGP_C3HHeJ_T0096667.1 MGP_C3HHeJ_G0035651.1 mouse_genomes_project X 99383928 99474862 - Hdac8 protein_coding processed_transcript MGP_C3HHeJ_T0096668.1 MGP_C3HHeJ_G0035651.1 mouse_genomes_project X 99467676 99474258 - Hdac8 protein_coding retained_intron MGP_C3HHeJ_T0016446.1 MGP_C3HHeJ_G0014550.1 mouse_genomes_project X 114066107 114066410 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016061.1 MGP_C3HHeJ_G0014165.1 mouse_genomes_project X 34563697 34564018 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018461.1 MGP_C3HHeJ_G0015556.1 mouse_genomes_project X 167849299 167890049 + Gm15246 processed_transcript processed_transcript MGP_C3HHeJ_T0018462.1 MGP_C3HHeJ_G0015556.1 mouse_genomes_project X 167849299 167897376 + Gm15246 processed_transcript processed_transcript MGP_C3HHeJ_T0096300.1 MGP_C3HHeJ_G0035551.1 mouse_genomes_project X 74318442 74323816 + MGP_C3HHeJ_P0096300 5430402E10Rik protein_coding protein_coding MGP_C3HHeJ_T0101494.1 MGP_C3HHeJ_G0039486.1 mouse_genomes_project X 60204707 60206553 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0016318.1 MGP_C3HHeJ_G0014422.1 mouse_genomes_project X 91583915 91584615 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016366.1 MGP_C3HHeJ_G0014470.1 mouse_genomes_project X 100616629 100617407 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016030.1 MGP_C3HHeJ_G0014134.1 mouse_genomes_project X 14959311 14959774 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095505.1 MGP_C3HHeJ_G0035342.1 mouse_genomes_project X 34111684 34304927 + MGP_C3HHeJ_P0095505 6030498E09Rik protein_coding protein_coding MGP_C3HHeJ_T0095506.1 MGP_C3HHeJ_G0035342.1 mouse_genomes_project X 34296593 34298065 + MGP_C3HHeJ_P0095506 6030498E09Rik protein_coding protein_coding MGP_C3HHeJ_T0016093.1 MGP_C3HHeJ_G0014197.1 mouse_genomes_project X 42791763 42792665 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096623.1 MGP_C3HHeJ_G0035639.1 mouse_genomes_project X 98368695 98373149 + MGP_C3HHeJ_P0096623 Itgb1bp2 protein_coding protein_coding MGP_C3HHeJ_T0096624.1 MGP_C3HHeJ_G0035639.1 mouse_genomes_project X 98371718 98372752 + Itgb1bp2 protein_coding retained_intron MGP_C3HHeJ_T0016375.1 MGP_C3HHeJ_G0014479.1 mouse_genomes_project X 101028710 101029724 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102366.1 MGP_C3HHeJ_G0040329.1 mouse_genomes_project X 103581234 103705365 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0096576.1 MGP_C3HHeJ_G0035632.1 mouse_genomes_project X 98167442 98175704 - MGP_C3HHeJ_P0096576 Gm20489 protein_coding protein_coding MGP_C3HHeJ_T0018369.1 MGP_C3HHeJ_G0015525.1 mouse_genomes_project X 2019465 2021583 + Gm14379 processed_transcript processed_transcript MGP_C3HHeJ_T0016144.1 MGP_C3HHeJ_G0014248.1 mouse_genomes_project X 56500986 56502918 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097441.1 MGP_C3HHeJ_G0035883.1 mouse_genomes_project X 153808561 153859285 - MGP_C3HHeJ_P0097441 Ptchd1 protein_coding protein_coding MGP_C3HHeJ_T0097442.1 MGP_C3HHeJ_G0035883.1 mouse_genomes_project X 153808647 153859078 - MGP_C3HHeJ_P0097442 Ptchd1 protein_coding protein_coding MGP_C3HHeJ_T0097443.1 MGP_C3HHeJ_G0035883.1 mouse_genomes_project X 153822784 153859774 - Ptchd1 protein_coding processed_transcript MGP_C3HHeJ_T0016357.1 MGP_C3HHeJ_G0014461.1 mouse_genomes_project X 100138157 100138670 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016022.1 MGP_C3HHeJ_G0014126.1 mouse_genomes_project X 12927045 12927865 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101316.1 MGP_C3HHeJ_G0039405.1 mouse_genomes_project X 150414011 150416211 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101317.1 MGP_C3HHeJ_G0039405.1 mouse_genomes_project X 150414296 150415438 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0016689.1 MGP_C3HHeJ_G0014793.1 mouse_genomes_project X 166277682 166278978 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016319.1 MGP_C3HHeJ_G0014423.1 mouse_genomes_project X 91599422 91600052 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095124.1 MGP_C3HHeJ_G0035213.1 mouse_genomes_project X 2582721 2582864 - MGP_C3HHeJ_P0095124 protein_coding protein_coding MGP_C3HHeJ_T0094992.1 MGP_C3HHeJ_G0035187.1 mouse_genomes_project X 1046938 1280072 + MGP_C3HHeJ_P0094992 Shroom4 protein_coding protein_coding MGP_C3HHeJ_T0094993.1 MGP_C3HHeJ_G0035187.1 mouse_genomes_project X 1063350 1229494 + MGP_C3HHeJ_P0094993 Shroom4 protein_coding protein_coding MGP_C3HHeJ_T0101039.1 MGP_C3HHeJ_G0039233.1 mouse_genomes_project X 98047764 98047884 - Gm24061 snoRNA snoRNA MGP_C3HHeJ_T0102337.1 MGP_C3HHeJ_G0040300.1 mouse_genomes_project X 32963357 32965135 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016399.1 MGP_C3HHeJ_G0014503.1 mouse_genomes_project X 104027636 104028042 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016594.1 MGP_C3HHeJ_G0014698.1 mouse_genomes_project X 144367532 144368009 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016573.1 MGP_C3HHeJ_G0014677.1 mouse_genomes_project X 141884044 141884354 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099811.1 MGP_C3HHeJ_G0038005.1 mouse_genomes_project X 160478377 160478481 + Gm23794 snRNA snRNA MGP_C3HHeJ_T0016385.1 MGP_C3HHeJ_G0014489.1 mouse_genomes_project X 102349602 102350629 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095386.1 MGP_C3HHeJ_G0035292.1 mouse_genomes_project X 16191538 16195461 + MGP_C3HHeJ_P0095386 Spaca5 protein_coding protein_coding MGP_C3HHeJ_T0016604.1 MGP_C3HHeJ_G0014708.1 mouse_genomes_project X 149103011 149103371 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095747.1 MGP_C3HHeJ_G0035419.1 mouse_genomes_project X 53086941 53096330 - Arhgef6 protein_coding retained_intron MGP_C3HHeJ_T0095748.1 MGP_C3HHeJ_G0035419.1 mouse_genomes_project X 53086941 53199525 - MGP_C3HHeJ_P0095748 Arhgef6 protein_coding protein_coding MGP_C3HHeJ_T0095749.1 MGP_C3HHeJ_G0035419.1 mouse_genomes_project X 53088896 53141200 - MGP_C3HHeJ_P0095749 Arhgef6 protein_coding protein_coding MGP_C3HHeJ_T0095750.1 MGP_C3HHeJ_G0035419.1 mouse_genomes_project X 53094670 53106743 - MGP_C3HHeJ_P0095750 Arhgef6 protein_coding protein_coding MGP_C3HHeJ_T0095751.1 MGP_C3HHeJ_G0035419.1 mouse_genomes_project X 53104385 53187296 - MGP_C3HHeJ_P0095751 Arhgef6 protein_coding protein_coding MGP_C3HHeJ_T0095752.1 MGP_C3HHeJ_G0035419.1 mouse_genomes_project X 53130905 53187298 - Arhgef6 protein_coding retained_intron MGP_C3HHeJ_T0095753.1 MGP_C3HHeJ_G0035419.1 mouse_genomes_project X 53159216 53161558 - Arhgef6 protein_coding processed_transcript MGP_C3HHeJ_T0095754.1 MGP_C3HHeJ_G0035419.1 mouse_genomes_project X 53196699 53199302 - Arhgef6 protein_coding retained_intron MGP_C3HHeJ_T0095518.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37171892 37193252 - MGP_C3HHeJ_P0095518 protein_coding protein_coding MGP_C3HHeJ_T0095519.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37171892 37286158 - MGP_C3HHeJ_P0095519 protein_coding protein_coding MGP_C3HHeJ_T0095520.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37174010 37193626 - MGP_C3HHeJ_P0095520 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095521.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37174384 37184796 - MGP_C3HHeJ_P0095521 protein_coding protein_coding MGP_C3HHeJ_T0095522.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37180682 37185284 - MGP_C3HHeJ_P0095522 protein_coding protein_coding MGP_C3HHeJ_T0095523.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37180694 37184948 - MGP_C3HHeJ_P0095523 protein_coding protein_coding MGP_C3HHeJ_T0095524.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37181866 37192721 - protein_coding processed_transcript MGP_C3HHeJ_T0095525.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37191009 37193328 - protein_coding retained_intron MGP_C3HHeJ_T0095526.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37193203 37237935 - protein_coding processed_transcript MGP_C3HHeJ_T0095527.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37193599 37210207 - protein_coding retained_intron MGP_C3HHeJ_T0095528.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37202620 37210349 - protein_coding retained_intron MGP_C3HHeJ_T0095529.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37235567 37286158 - protein_coding retained_intron MGP_C3HHeJ_T0095530.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37239105 37286143 - MGP_C3HHeJ_P0095530 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095531.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37252859 37295042 - MGP_C3HHeJ_P0095531 protein_coding protein_coding MGP_C3HHeJ_T0095532.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37252863 37270574 - MGP_C3HHeJ_P0095532 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095533.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37258407 37272029 - protein_coding retained_intron MGP_C3HHeJ_T0095047.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383057 2387377 + MGP_C3HHeJ_P0095047 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095048.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383304 2389285 + MGP_C3HHeJ_P0095048 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095049.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383324 2389075 + MGP_C3HHeJ_P0095049 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095050.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383333 2389286 + MGP_C3HHeJ_P0095050 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095051.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383334 2387377 + MGP_C3HHeJ_P0095051 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095052.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383334 2389267 + MGP_C3HHeJ_P0095052 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095053.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383344 2389035 + MGP_C3HHeJ_P0095053 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095054.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383439 2385376 + MGP_C3HHeJ_P0095054 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095055.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383441 2387361 + MGP_C3HHeJ_P0095055 Wdr45 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095056.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383446 2387376 + MGP_C3HHeJ_P0095056 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095057.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383817 2387417 + Wdr45 protein_coding processed_transcript MGP_C3HHeJ_T0095058.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2384011 2389088 + MGP_C3HHeJ_P0095058 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095059.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2384415 2387112 + MGP_C3HHeJ_P0095059 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095060.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2384629 2386965 + Wdr45 protein_coding processed_transcript MGP_C3HHeJ_T0095061.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2387657 2388575 + Wdr45 protein_coding processed_transcript MGP_C3HHeJ_T0016350.1 MGP_C3HHeJ_G0014454.1 mouse_genomes_project X 98746198 98747078 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099746.1 MGP_C3HHeJ_G0037940.1 mouse_genomes_project X 12332725 12332829 + Gm22294 snRNA snRNA MGP_C3HHeJ_T0097524.1 MGP_C3HHeJ_G0035901.1 mouse_genomes_project X 158952136 159051681 - MGP_C3HHeJ_P0097524 Ppef1 protein_coding protein_coding MGP_C3HHeJ_T0097525.1 MGP_C3HHeJ_G0035901.1 mouse_genomes_project X 158971867 159064423 - MGP_C3HHeJ_P0097525 Ppef1 protein_coding protein_coding MGP_C3HHeJ_T0097526.1 MGP_C3HHeJ_G0035901.1 mouse_genomes_project X 159025252 159051645 - MGP_C3HHeJ_P0097526 Ppef1 protein_coding protein_coding MGP_C3HHeJ_T0095468.1 MGP_C3HHeJ_G0035327.1 mouse_genomes_project X 33134977 33139398 - MGP_C3HHeJ_P0095468 Rhox8 protein_coding protein_coding MGP_C3HHeJ_T0016031.1 MGP_C3HHeJ_G0014135.1 mouse_genomes_project X 15417552 15417958 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011093.1 MGP_C3HHeJ_G0009226.1 mouse_genomes_project X 70546814 70546893 - Mir7091 miRNA miRNA MGP_C3HHeJ_T0011051.1 MGP_C3HHeJ_G0009184.1 mouse_genomes_project X 48219884 48219964 - Mir20b miRNA miRNA MGP_C3HHeJ_T0097680.1 MGP_C3HHeJ_G0035944.1 mouse_genomes_project X 165955435 166641464 - MGP_C3HHeJ_P0097680 Frmpd4 protein_coding protein_coding MGP_C3HHeJ_T0097681.1 MGP_C3HHeJ_G0035944.1 mouse_genomes_project X 165955435 167088106 - MGP_C3HHeJ_P0097681 Frmpd4 protein_coding protein_coding MGP_C3HHeJ_T0097682.1 MGP_C3HHeJ_G0035944.1 mouse_genomes_project X 165955439 166404133 - MGP_C3HHeJ_P0097682 Frmpd4 protein_coding protein_coding MGP_C3HHeJ_T0097683.1 MGP_C3HHeJ_G0035944.1 mouse_genomes_project X 165959424 166230957 - MGP_C3HHeJ_P0097683 Frmpd4 protein_coding protein_coding MGP_C3HHeJ_T0097546.1 MGP_C3HHeJ_G0035907.1 mouse_genomes_project X 160189029 160523903 - MGP_C3HHeJ_P0097546 Nhs protein_coding protein_coding MGP_C3HHeJ_T0097547.1 MGP_C3HHeJ_G0035907.1 mouse_genomes_project X 160192548 160523561 - MGP_C3HHeJ_P0097547 Nhs protein_coding protein_coding MGP_C3HHeJ_T0016109.1 MGP_C3HHeJ_G0014213.1 mouse_genomes_project X 46653357 46654474 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096861.1 MGP_C3HHeJ_G0035715.1 mouse_genomes_project X 111623041 111704138 + MGP_C3HHeJ_P0096861 Klhl4 protein_coding protein_coding MGP_C3HHeJ_T0096862.1 MGP_C3HHeJ_G0035715.1 mouse_genomes_project X 111623041 111704138 + MGP_C3HHeJ_P0096862 Klhl4 protein_coding protein_coding MGP_C3HHeJ_T0096863.1 MGP_C3HHeJ_G0035715.1 mouse_genomes_project X 111623312 111703817 + MGP_C3HHeJ_P0096863 Klhl4 protein_coding protein_coding MGP_C3HHeJ_T0011666.1 MGP_C3HHeJ_G0009799.1 mouse_genomes_project X 84335882 84336166 - Gm24812 misc_RNA misc_RNA MGP_C3HHeJ_T0099807.1 MGP_C3HHeJ_G0038001.1 mouse_genomes_project X 151661061 151661168 - Gm25793 snRNA snRNA MGP_C3HHeJ_T0016280.1 MGP_C3HHeJ_G0014384.1 mouse_genomes_project X 85576017 85577497 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096541.1 MGP_C3HHeJ_G0035624.1 mouse_genomes_project X 97517105 97620649 + MGP_C3HHeJ_P0096541 Kif4 protein_coding protein_coding MGP_C3HHeJ_T0096542.1 MGP_C3HHeJ_G0035624.1 mouse_genomes_project X 97525241 97527591 + Kif4 protein_coding retained_intron MGP_C3HHeJ_T0096543.1 MGP_C3HHeJ_G0035624.1 mouse_genomes_project X 97604183 97618085 + Kif4 protein_coding processed_transcript MGP_C3HHeJ_T0015996.1 MGP_C3HHeJ_G0014100.1 mouse_genomes_project X 6894434 6894664 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096771.1 MGP_C3HHeJ_G0035686.1 mouse_genomes_project X 104199995 104213589 + MGP_C3HHeJ_P0096771 Lpar4 protein_coding protein_coding MGP_C3HHeJ_T0016268.1 MGP_C3HHeJ_G0014372.1 mouse_genomes_project X 84478763 84479299 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011675.1 MGP_C3HHeJ_G0009808.1 mouse_genomes_project X 100746839 100747044 + Gm27321 misc_RNA misc_RNA MGP_C3HHeJ_T0099747.1 MGP_C3HHeJ_G0037941.1 mouse_genomes_project X 14414967 14415074 + Gm22783 snRNA snRNA MGP_C3HHeJ_T0097177.1 MGP_C3HHeJ_G0035825.1 mouse_genomes_project X 139905298 139906841 - MGP_C3HHeJ_P0097177 Kcne1l protein_coding protein_coding MGP_C3HHeJ_T0096460.1 MGP_C3HHeJ_G0035602.1 mouse_genomes_project X 93165045 93308402 - MGP_C3HHeJ_P0096460 Hsf3 protein_coding protein_coding MGP_C3HHeJ_T0096461.1 MGP_C3HHeJ_G0035602.1 mouse_genomes_project X 93165734 93209506 - MGP_C3HHeJ_P0096461 Hsf3 protein_coding protein_coding MGP_C3HHeJ_T0096462.1 MGP_C3HHeJ_G0035602.1 mouse_genomes_project X 93166232 93308391 - MGP_C3HHeJ_P0096462 Hsf3 protein_coding protein_coding MGP_C3HHeJ_T0096463.1 MGP_C3HHeJ_G0035602.1 mouse_genomes_project X 93166390 93227403 - MGP_C3HHeJ_P0096463 Hsf3 protein_coding protein_coding MGP_C3HHeJ_T0096464.1 MGP_C3HHeJ_G0035602.1 mouse_genomes_project X 93178281 93196322 - Hsf3 protein_coding retained_intron MGP_C3HHeJ_T0016274.1 MGP_C3HHeJ_G0014378.1 mouse_genomes_project X 85188154 85190599 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097467.1 MGP_C3HHeJ_G0035890.1 mouse_genomes_project X 156068747 156070682 + MGP_C3HHeJ_P0097467 Klhl34 protein_coding protein_coding MGP_C3HHeJ_T0096331.1 MGP_C3HHeJ_G0035562.1 mouse_genomes_project X 79816937 79818355 - MGP_C3HHeJ_P0096331 Tsga8 protein_coding protein_coding MGP_C3HHeJ_T0011077.1 MGP_C3HHeJ_G0009210.1 mouse_genomes_project X 62873446 62873523 - Mir871 miRNA miRNA MGP_C3HHeJ_T0016522.1 MGP_C3HHeJ_G0014626.1 mouse_genomes_project X 134183583 134183921 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095979.1 MGP_C3HHeJ_G0035493.1 mouse_genomes_project X 70042578 70077245 - MGP_C3HHeJ_P0095979 Pdzd4 protein_coding protein_coding MGP_C3HHeJ_T0095980.1 MGP_C3HHeJ_G0035493.1 mouse_genomes_project X 70042578 70077245 - MGP_C3HHeJ_P0095980 Pdzd4 protein_coding protein_coding MGP_C3HHeJ_T0016041.1 MGP_C3HHeJ_G0014145.1 mouse_genomes_project X 17335454 17335808 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016112.1 MGP_C3HHeJ_G0014216.1 mouse_genomes_project X 47076661 47076859 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095214.1 MGP_C3HHeJ_G0035244.1 mouse_genomes_project X 4508221 4516941 - MGP_C3HHeJ_P0095214 Dynlt3 protein_coding protein_coding MGP_C3HHeJ_T0095215.1 MGP_C3HHeJ_G0035244.1 mouse_genomes_project X 4509928 4513555 - Dynlt3 protein_coding processed_transcript MGP_C3HHeJ_T0095216.1 MGP_C3HHeJ_G0035244.1 mouse_genomes_project X 4510210 4516941 - Dynlt3 protein_coding processed_transcript MGP_C3HHeJ_T0095217.1 MGP_C3HHeJ_G0035244.1 mouse_genomes_project X 4510272 4511292 - Dynlt3 protein_coding processed_transcript MGP_C3HHeJ_T0096706.1 MGP_C3HHeJ_G0035669.1 mouse_genomes_project X 101711915 101850649 - MGP_C3HHeJ_P0096706 Zdhhc15 protein_coding protein_coding MGP_C3HHeJ_T0095312.1 MGP_C3HHeJ_G0035276.1 mouse_genomes_project X 15179903 15369207 - MGP_C3HHeJ_P0095312 Slc9a7 protein_coding protein_coding MGP_C3HHeJ_T0095313.1 MGP_C3HHeJ_G0035276.1 mouse_genomes_project X 15180111 15369084 - MGP_C3HHeJ_P0095313 Slc9a7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095314.1 MGP_C3HHeJ_G0035276.1 mouse_genomes_project X 15180111 15368925 - MGP_C3HHeJ_P0095314 Slc9a7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095315.1 MGP_C3HHeJ_G0035276.1 mouse_genomes_project X 15193059 15369186 - Slc9a7 protein_coding retained_intron MGP_C3HHeJ_T0095316.1 MGP_C3HHeJ_G0035276.1 mouse_genomes_project X 15228028 15369170 - MGP_C3HHeJ_P0095316 Slc9a7 protein_coding protein_coding MGP_C3HHeJ_T0095317.1 MGP_C3HHeJ_G0035276.1 mouse_genomes_project X 15239478 15369207 - Slc9a7 protein_coding retained_intron MGP_C3HHeJ_T0101041.1 MGP_C3HHeJ_G0039235.1 mouse_genomes_project X 101803835 101803942 + Gm22430 snoRNA snoRNA MGP_C3HHeJ_T0016264.1 MGP_C3HHeJ_G0014368.1 mouse_genomes_project X 82424186 82424700 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101048.1 MGP_C3HHeJ_G0039242.1 mouse_genomes_project X 126293109 126293241 - Gm26029 snoRNA snoRNA MGP_C3HHeJ_T0011050.1 MGP_C3HHeJ_G0009183.1 mouse_genomes_project X 48219754 48219838 - Mir19b-2 miRNA miRNA MGP_C3HHeJ_T0096370.1 MGP_C3HHeJ_G0035575.1 mouse_genomes_project X 88097088 88098123 + MGP_C3HHeJ_P0096370 protein_coding protein_coding MGP_C3HHeJ_T0095596.1 MGP_C3HHeJ_G0035363.1 mouse_genomes_project X 43700336 43727185 + MGP_C3HHeJ_P0095596 Utp14a protein_coding protein_coding MGP_C3HHeJ_T0095597.1 MGP_C3HHeJ_G0035363.1 mouse_genomes_project X 43700371 43711159 + Utp14a protein_coding processed_transcript MGP_C3HHeJ_T0095598.1 MGP_C3HHeJ_G0035363.1 mouse_genomes_project X 43700392 43717401 + Utp14a protein_coding processed_transcript MGP_C3HHeJ_T0016369.1 MGP_C3HHeJ_G0014473.1 mouse_genomes_project X 100717611 100718177 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016072.1 MGP_C3HHeJ_G0014176.1 mouse_genomes_project X 37068069 37068453 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016255.1 MGP_C3HHeJ_G0014359.1 mouse_genomes_project X 81228270 81228582 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101067.1 MGP_C3HHeJ_G0039261.1 mouse_genomes_project X 156666301 156666452 + Gm22522 snoRNA snoRNA MGP_C3HHeJ_T0011667.1 MGP_C3HHeJ_G0009800.1 mouse_genomes_project X 97644148 97644476 + Gm22160 misc_RNA misc_RNA MGP_C3HHeJ_T0095410.1 MGP_C3HHeJ_G0035302.1 mouse_genomes_project X 19099290 19100523 - MGP_C3HHeJ_P0095410 Gm4985 protein_coding protein_coding MGP_C3HHeJ_T0016457.1 MGP_C3HHeJ_G0014561.1 mouse_genomes_project X 115281370 115281721 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095599.1 MGP_C3HHeJ_G0035364.1 mouse_genomes_project X 43789508 43810253 + Bcorl1 protein_coding processed_transcript MGP_C3HHeJ_T0095600.1 MGP_C3HHeJ_G0035364.1 mouse_genomes_project X 43808995 43855251 + MGP_C3HHeJ_P0095600 Bcorl1 protein_coding protein_coding MGP_C3HHeJ_T0095601.1 MGP_C3HHeJ_G0035364.1 mouse_genomes_project X 43809366 43827279 + MGP_C3HHeJ_P0095601 Bcorl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095602.1 MGP_C3HHeJ_G0035364.1 mouse_genomes_project X 43817094 43832112 + MGP_C3HHeJ_P0095602 Bcorl1 protein_coding protein_coding MGP_C3HHeJ_T0016020.1 MGP_C3HHeJ_G0014124.1 mouse_genomes_project X 12655881 12657736 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011686.1 MGP_C3HHeJ_G0009819.1 mouse_genomes_project X 142497310 142497632 + Gm26024 misc_RNA misc_RNA MGP_C3HHeJ_T0016252.1 MGP_C3HHeJ_G0014356.1 mouse_genomes_project X 78986944 78987746 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016542.1 MGP_C3HHeJ_G0014646.1 mouse_genomes_project X 137342729 137342835 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016524.1 MGP_C3HHeJ_G0014628.1 mouse_genomes_project X 134379777 134380195 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016526.1 MGP_C3HHeJ_G0014630.1 mouse_genomes_project X 134501522 134501818 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011062.1 MGP_C3HHeJ_G0009195.1 mouse_genomes_project X 54990607 54990686 - Mir504 miRNA miRNA MGP_C3HHeJ_T0011029.1 MGP_C3HHeJ_G0009162.1 mouse_genomes_project X 2479345 2479466 + Mir1198 miRNA miRNA MGP_C3HHeJ_T0096616.1 MGP_C3HHeJ_G0035638.1 mouse_genomes_project X 98348099 98358743 + MGP_C3HHeJ_P0096616 Nono protein_coding protein_coding MGP_C3HHeJ_T0096617.1 MGP_C3HHeJ_G0035638.1 mouse_genomes_project X 98348336 98368199 + MGP_C3HHeJ_P0096617 Nono protein_coding protein_coding MGP_C3HHeJ_T0096618.1 MGP_C3HHeJ_G0035638.1 mouse_genomes_project X 98348514 98362032 + Nono protein_coding retained_intron MGP_C3HHeJ_T0096619.1 MGP_C3HHeJ_G0035638.1 mouse_genomes_project X 98362191 98363932 + Nono protein_coding retained_intron MGP_C3HHeJ_T0096620.1 MGP_C3HHeJ_G0035638.1 mouse_genomes_project X 98362906 98367503 + Nono protein_coding retained_intron MGP_C3HHeJ_T0096621.1 MGP_C3HHeJ_G0035638.1 mouse_genomes_project X 98364333 98367304 + Nono protein_coding processed_transcript MGP_C3HHeJ_T0096622.1 MGP_C3HHeJ_G0035638.1 mouse_genomes_project X 98365423 98367419 + Nono protein_coding retained_intron MGP_C3HHeJ_T0016253.1 MGP_C3HHeJ_G0014357.1 mouse_genomes_project X 79061129 79062098 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011660.1 MGP_C3HHeJ_G0009793.1 mouse_genomes_project X 45429414 45429709 + Gm23385 misc_RNA misc_RNA MGP_C3HHeJ_T0096104.1 MGP_C3HHeJ_G0035507.1 mouse_genomes_project X 70542404 70544301 + protein_coding processed_transcript MGP_C3HHeJ_T0096105.1 MGP_C3HHeJ_G0035507.1 mouse_genomes_project X 70542409 70545898 + MGP_C3HHeJ_P0096105 protein_coding protein_coding MGP_C3HHeJ_T0096106.1 MGP_C3HHeJ_G0035507.1 mouse_genomes_project X 70542502 70543761 + protein_coding retained_intron MGP_C3HHeJ_T0096107.1 MGP_C3HHeJ_G0035507.1 mouse_genomes_project X 70542525 70545873 + MGP_C3HHeJ_P0096107 protein_coding protein_coding MGP_C3HHeJ_T0096108.1 MGP_C3HHeJ_G0035507.1 mouse_genomes_project X 70542532 70544463 + protein_coding retained_intron MGP_C3HHeJ_T0096109.1 MGP_C3HHeJ_G0035507.1 mouse_genomes_project X 70542955 70545832 + protein_coding retained_intron MGP_C3HHeJ_T0096110.1 MGP_C3HHeJ_G0035507.1 mouse_genomes_project X 70542988 70543781 + protein_coding retained_intron MGP_C3HHeJ_T0096111.1 MGP_C3HHeJ_G0035507.1 mouse_genomes_project X 70543289 70543951 + protein_coding retained_intron MGP_C3HHeJ_T0096112.1 MGP_C3HHeJ_G0035507.1 mouse_genomes_project X 70543383 70544344 + protein_coding retained_intron MGP_C3HHeJ_T0096030.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70180007 70189640 - MGP_C3HHeJ_P0096030 Renbp protein_coding protein_coding MGP_C3HHeJ_T0096031.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70180007 70189582 - MGP_C3HHeJ_P0096031 Renbp protein_coding protein_coding MGP_C3HHeJ_T0096032.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70180008 70184287 - Renbp protein_coding retained_intron MGP_C3HHeJ_T0096033.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70180009 70189607 - Renbp protein_coding retained_intron MGP_C3HHeJ_T0096034.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70180025 70189546 - MGP_C3HHeJ_P0096034 Renbp protein_coding protein_coding MGP_C3HHeJ_T0096035.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70183148 70187919 - Renbp protein_coding processed_transcript MGP_C3HHeJ_T0096036.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70184152 70186515 - Renbp protein_coding retained_intron MGP_C3HHeJ_T0096037.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70186673 70189531 - Renbp protein_coding retained_intron MGP_C3HHeJ_T0096038.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70187931 70189535 - MGP_C3HHeJ_P0096038 Renbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096039.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70188378 70189542 - Renbp protein_coding retained_intron MGP_C3HHeJ_T0016584.1 MGP_C3HHeJ_G0014688.1 mouse_genomes_project X 143338191 143339139 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016550.1 MGP_C3HHeJ_G0014654.1 mouse_genomes_project X 138954960 138955742 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096926.1 MGP_C3HHeJ_G0035741.1 mouse_genomes_project X 131462106 131519831 - MGP_C3HHeJ_P0096926 Trmt2b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096927.1 MGP_C3HHeJ_G0035741.1 mouse_genomes_project X 131462862 131519831 - MGP_C3HHeJ_P0096927 Trmt2b protein_coding protein_coding MGP_C3HHeJ_T0096928.1 MGP_C3HHeJ_G0035741.1 mouse_genomes_project X 131462863 131519776 - Trmt2b protein_coding retained_intron MGP_C3HHeJ_T0096929.1 MGP_C3HHeJ_G0035741.1 mouse_genomes_project X 131462867 131519769 - MGP_C3HHeJ_P0096929 Trmt2b protein_coding protein_coding MGP_C3HHeJ_T0096930.1 MGP_C3HHeJ_G0035741.1 mouse_genomes_project X 131503530 131519833 - MGP_C3HHeJ_P0096930 Trmt2b protein_coding protein_coding MGP_C3HHeJ_T0096371.1 MGP_C3HHeJ_G0035576.1 mouse_genomes_project X 88279106 88282581 + MGP_C3HHeJ_P0096371 Mageb5 protein_coding protein_coding MGP_C3HHeJ_T0096465.1 MGP_C3HHeJ_G0035603.1 mouse_genomes_project X 93307466 93427203 + MGP_C3HHeJ_P0096465 Heph protein_coding protein_coding MGP_C3HHeJ_T0096466.1 MGP_C3HHeJ_G0035603.1 mouse_genomes_project X 93308480 93384686 + MGP_C3HHeJ_P0096466 Heph protein_coding protein_coding MGP_C3HHeJ_T0096467.1 MGP_C3HHeJ_G0035603.1 mouse_genomes_project X 93308497 93427200 + MGP_C3HHeJ_P0096467 Heph protein_coding protein_coding MGP_C3HHeJ_T0096468.1 MGP_C3HHeJ_G0035603.1 mouse_genomes_project X 93308535 93329895 + Heph protein_coding retained_intron MGP_C3HHeJ_T0096469.1 MGP_C3HHeJ_G0035603.1 mouse_genomes_project X 93308535 93342063 + Heph protein_coding retained_intron MGP_C3HHeJ_T0005507.1 MGP_C3HHeJ_G0004633.1 mouse_genomes_project X 47757457 47796320 + Gm14582 antisense antisense MGP_C3HHeJ_T0016155.1 MGP_C3HHeJ_G0014259.1 mouse_genomes_project X 57580041 57580619 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096288.1 MGP_C3HHeJ_G0035543.1 mouse_genomes_project X 72656546 72659981 + MGP_C3HHeJ_P0096288 protein_coding protein_coding MGP_C3HHeJ_T0099806.1 MGP_C3HHeJ_G0038000.1 mouse_genomes_project X 149338581 149338731 + Gm22248 snRNA snRNA MGP_C3HHeJ_T0011671.1 MGP_C3HHeJ_G0009804.1 mouse_genomes_project X 100602971 100603094 + Gm27875 misc_RNA misc_RNA MGP_C3HHeJ_T0097009.1 MGP_C3HHeJ_G0035768.1 mouse_genomes_project X 133064407 133068997 + MGP_C3HHeJ_P0097009 Armcx5 protein_coding protein_coding MGP_C3HHeJ_T0097014.1 MGP_C3HHeJ_G0035768.1 mouse_genomes_project X 133064409 133067081 + Armcx5 protein_coding retained_intron MGP_C3HHeJ_T0011127.1 MGP_C3HHeJ_G0009260.1 mouse_genomes_project X 144727761 144727847 + Mir1264 miRNA miRNA MGP_C3HHeJ_T0096574.1 MGP_C3HHeJ_G0035631.1 mouse_genomes_project X 98167413 98170013 - Gm614 protein_coding processed_transcript MGP_C3HHeJ_T0096575.1 MGP_C3HHeJ_G0035631.1 mouse_genomes_project X 98167413 98170030 - MGP_C3HHeJ_P0096575 Gm614 protein_coding protein_coding MGP_C3HHeJ_T0016627.1 MGP_C3HHeJ_G0014731.1 mouse_genomes_project X 153406948 153407650 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016447.1 MGP_C3HHeJ_G0014551.1 mouse_genomes_project X 114076119 114076507 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099744.1 MGP_C3HHeJ_G0037938.1 mouse_genomes_project X 9296048 9296239 - Gm25202 snRNA snRNA MGP_C3HHeJ_T0016282.1 MGP_C3HHeJ_G0014386.1 mouse_genomes_project X 85882454 85882962 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096867.1 MGP_C3HHeJ_G0035719.1 mouse_genomes_project X 114186887 114187360 + MGP_C3HHeJ_P0096867 Gm14920 protein_coding protein_coding MGP_C3HHeJ_T0099802.1 MGP_C3HHeJ_G0037996.1 mouse_genomes_project X 142834240 142834385 + Gm25097 snRNA snRNA MGP_C3HHeJ_T0097624.1 MGP_C3HHeJ_G0035929.1 mouse_genomes_project X 163371952 163420832 - MGP_C3HHeJ_P0097624 Mospd2 protein_coding protein_coding MGP_C3HHeJ_T0097625.1 MGP_C3HHeJ_G0035929.1 mouse_genomes_project X 163372101 163420754 - MGP_C3HHeJ_P0097625 Mospd2 protein_coding protein_coding MGP_C3HHeJ_T0097626.1 MGP_C3HHeJ_G0035929.1 mouse_genomes_project X 163373992 163420792 - MGP_C3HHeJ_P0097626 Mospd2 protein_coding protein_coding MGP_C3HHeJ_T0097627.1 MGP_C3HHeJ_G0035929.1 mouse_genomes_project X 163394750 163420785 - Mospd2 protein_coding retained_intron MGP_C3HHeJ_T0097628.1 MGP_C3HHeJ_G0035929.1 mouse_genomes_project X 163394755 163420785 - Mospd2 protein_coding retained_intron MGP_C3HHeJ_T0097629.1 MGP_C3HHeJ_G0035929.1 mouse_genomes_project X 163399834 163420782 - Mospd2 protein_coding retained_intron MGP_C3HHeJ_T0097630.1 MGP_C3HHeJ_G0035929.1 mouse_genomes_project X 163403603 163420784 - Mospd2 protein_coding retained_intron MGP_C3HHeJ_T0097631.1 MGP_C3HHeJ_G0035929.1 mouse_genomes_project X 163403929 163420800 - Mospd2 protein_coding processed_transcript MGP_C3HHeJ_T0097632.1 MGP_C3HHeJ_G0035929.1 mouse_genomes_project X 163420117 163420779 - Mospd2 protein_coding retained_intron MGP_C3HHeJ_T0095126.1 MGP_C3HHeJ_G0035215.1 mouse_genomes_project X 2595188 2599777 + MGP_C3HHeJ_P0095126 Pcsk1n protein_coding protein_coding MGP_C3HHeJ_T0015967.1 MGP_C3HHeJ_G0014071.1 mouse_genomes_project X 2180628 2181191 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016673.1 MGP_C3HHeJ_G0014777.1 mouse_genomes_project X 161673986 161674452 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011033.1 MGP_C3HHeJ_G0009166.1 mouse_genomes_project X 14200088 14200183 - Mir221 miRNA miRNA MGP_C3HHeJ_T0095934.1 MGP_C3HHeJ_G0035485.1 mouse_genomes_project X 69896747 69901606 - MGP_C3HHeJ_P0095934 Pnck protein_coding protein_coding MGP_C3HHeJ_T0095935.1 MGP_C3HHeJ_G0035485.1 mouse_genomes_project X 69896747 69901710 - MGP_C3HHeJ_P0095935 Pnck protein_coding protein_coding MGP_C3HHeJ_T0095936.1 MGP_C3HHeJ_G0035485.1 mouse_genomes_project X 69896748 69901999 - MGP_C3HHeJ_P0095936 Pnck protein_coding protein_coding MGP_C3HHeJ_T0095937.1 MGP_C3HHeJ_G0035485.1 mouse_genomes_project X 69897004 69898585 - Pnck protein_coding retained_intron MGP_C3HHeJ_T0095938.1 MGP_C3HHeJ_G0035485.1 mouse_genomes_project X 69898029 69901315 - MGP_C3HHeJ_P0095938 Pnck protein_coding protein_coding MGP_C3HHeJ_T0097579.1 MGP_C3HHeJ_G0035914.1 mouse_genomes_project X 161925668 161964965 - MGP_C3HHeJ_P0097579 Grpr protein_coding protein_coding MGP_C3HHeJ_T0016534.1 MGP_C3HHeJ_G0014638.1 mouse_genomes_project X 135563614 135563821 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016035.1 MGP_C3HHeJ_G0014139.1 mouse_genomes_project X 15630218 15631545 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002445.1 MGP_C3HHeJ_G0002363.1 mouse_genomes_project X 125529057 125530122 + TEC TEC MGP_C3HHeJ_T0095478.1 MGP_C3HHeJ_G0035334.1 mouse_genomes_project X 33416697 33425331 + MGP_C3HHeJ_P0095478 Rhox13 protein_coding protein_coding MGP_C3HHeJ_T0011125.1 MGP_C3HHeJ_G0009258.1 mouse_genomes_project X 144715228 144715336 + Mir764 miRNA miRNA MGP_C3HHeJ_T0018377.1 MGP_C3HHeJ_G0015530.1 mouse_genomes_project X 7691792 7752260 + Gm14634 processed_transcript processed_transcript MGP_C3HHeJ_T0018378.1 MGP_C3HHeJ_G0015530.1 mouse_genomes_project X 7692058 7748987 + Gm14634 processed_transcript processed_transcript MGP_C3HHeJ_T0011061.1 MGP_C3HHeJ_G0009194.1 mouse_genomes_project X 52422103 52422166 - Mir5116 miRNA miRNA MGP_C3HHeJ_T0097471.1 MGP_C3HHeJ_G0035892.1 mouse_genomes_project X 157483414 157652768 + MGP_C3HHeJ_P0097471 Rps6ka3 protein_coding protein_coding MGP_C3HHeJ_T0097472.1 MGP_C3HHeJ_G0035892.1 mouse_genomes_project X 157536417 157591722 + MGP_C3HHeJ_P0097472 Rps6ka3 protein_coding protein_coding MGP_C3HHeJ_T0097473.1 MGP_C3HHeJ_G0035892.1 mouse_genomes_project X 157537121 157656510 + MGP_C3HHeJ_P0097473 Rps6ka3 protein_coding protein_coding MGP_C3HHeJ_T0097474.1 MGP_C3HHeJ_G0035892.1 mouse_genomes_project X 157537188 157608963 + MGP_C3HHeJ_P0097474 Rps6ka3 protein_coding protein_coding MGP_C3HHeJ_T0097475.1 MGP_C3HHeJ_G0035892.1 mouse_genomes_project X 157537389 157609053 + MGP_C3HHeJ_P0097475 Rps6ka3 protein_coding protein_coding MGP_C3HHeJ_T0097476.1 MGP_C3HHeJ_G0035892.1 mouse_genomes_project X 157557345 157607461 + MGP_C3HHeJ_P0097476 Rps6ka3 protein_coding protein_coding MGP_C3HHeJ_T0097477.1 MGP_C3HHeJ_G0035892.1 mouse_genomes_project X 157583477 157611466 + MGP_C3HHeJ_P0097477 Rps6ka3 protein_coding protein_coding MGP_C3HHeJ_T0097478.1 MGP_C3HHeJ_G0035892.1 mouse_genomes_project X 157650586 157651771 + Rps6ka3 protein_coding processed_transcript MGP_C3HHeJ_T0097479.1 MGP_C3HHeJ_G0035892.1 mouse_genomes_project X 157650671 157652006 + Rps6ka3 protein_coding retained_intron MGP_C3HHeJ_T0095910.1 MGP_C3HHeJ_G0035474.1 mouse_genomes_project X 69311367 69321539 - MGP_C3HHeJ_P0095910 protein_coding protein_coding MGP_C3HHeJ_T0016471.1 MGP_C3HHeJ_G0014575.1 mouse_genomes_project X 119122225 119123344 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015978.1 MGP_C3HHeJ_G0014082.1 mouse_genomes_project X 3416278 3416638 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097152.1 MGP_C3HHeJ_G0035814.1 mouse_genomes_project X 138385853 138390980 - MGP_C3HHeJ_P0097152 Tex13 protein_coding protein_coding MGP_C3HHeJ_T0097153.1 MGP_C3HHeJ_G0035814.1 mouse_genomes_project X 138386814 138388399 - Tex13 protein_coding retained_intron MGP_C3HHeJ_T0016120.1 MGP_C3HHeJ_G0014224.1 mouse_genomes_project X 49315467 49315668 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099794.1 MGP_C3HHeJ_G0037988.1 mouse_genomes_project X 113520955 113521119 + Gm24624 snRNA snRNA MGP_C3HHeJ_T0016200.1 MGP_C3HHeJ_G0014304.1 mouse_genomes_project X 68875900 68876236 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016106.1 MGP_C3HHeJ_G0014210.1 mouse_genomes_project X 46475937 46476794 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095430.1 MGP_C3HHeJ_G0035310.1 mouse_genomes_project X 31837255 31876059 - MGP_C3HHeJ_P0095430 Akap17b protein_coding protein_coding MGP_C3HHeJ_T0095431.1 MGP_C3HHeJ_G0035310.1 mouse_genomes_project X 31840820 31875760 - MGP_C3HHeJ_P0095431 Akap17b protein_coding protein_coding MGP_C3HHeJ_T0096756.1 MGP_C3HHeJ_G0035681.1 mouse_genomes_project X 103429398 103442344 - MGP_C3HHeJ_P0096756 Taf9b protein_coding protein_coding MGP_C3HHeJ_T0096757.1 MGP_C3HHeJ_G0035681.1 mouse_genomes_project X 103429398 103441087 - MGP_C3HHeJ_P0096757 Taf9b protein_coding protein_coding MGP_C3HHeJ_T0096758.1 MGP_C3HHeJ_G0035681.1 mouse_genomes_project X 103439525 103441936 - MGP_C3HHeJ_P0096758 Taf9b protein_coding protein_coding MGP_C3HHeJ_T0016113.1 MGP_C3HHeJ_G0014217.1 mouse_genomes_project X 47294635 47295168 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098307.1 MGP_C3HHeJ_G0036519.1 mouse_genomes_project X 118506555 118506676 - Gm25825 scaRNA scaRNA MGP_C3HHeJ_T0011683.1 MGP_C3HHeJ_G0009816.1 mouse_genomes_project X 135626462 135626721 - Gm24675 misc_RNA misc_RNA MGP_C3HHeJ_T0097183.1 MGP_C3HHeJ_G0035827.1 mouse_genomes_project X 140301161 140464632 + MGP_C3HHeJ_P0097183 Tmem164 protein_coding protein_coding MGP_C3HHeJ_T0097184.1 MGP_C3HHeJ_G0035827.1 mouse_genomes_project X 140302606 140392790 + Tmem164 protein_coding retained_intron MGP_C3HHeJ_T0097185.1 MGP_C3HHeJ_G0035827.1 mouse_genomes_project X 140392492 140469746 + MGP_C3HHeJ_P0097185 Tmem164 protein_coding protein_coding MGP_C3HHeJ_T0015964.1 MGP_C3HHeJ_G0014068.1 mouse_genomes_project X 687772 688363 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097154.1 MGP_C3HHeJ_G0035815.1 mouse_genomes_project X 138483432 138515347 + MGP_C3HHeJ_P0097154 Vsig1 protein_coding protein_coding MGP_C3HHeJ_T0097155.1 MGP_C3HHeJ_G0035815.1 mouse_genomes_project X 138499080 138514108 + Vsig1 protein_coding processed_transcript MGP_C3HHeJ_T0101312.1 MGP_C3HHeJ_G0039401.1 mouse_genomes_project X 127675387 127676096 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0096395.1 MGP_C3HHeJ_G0035586.1 mouse_genomes_project X 90824685 90879337 - MGP_C3HHeJ_P0096395 Zfx protein_coding protein_coding MGP_C3HHeJ_T0096396.1 MGP_C3HHeJ_G0035586.1 mouse_genomes_project X 90834033 90879305 - MGP_C3HHeJ_P0096396 Zfx protein_coding protein_coding MGP_C3HHeJ_T0096397.1 MGP_C3HHeJ_G0035586.1 mouse_genomes_project X 90851680 90879039 - MGP_C3HHeJ_P0096397 Zfx protein_coding protein_coding MGP_C3HHeJ_T0096398.1 MGP_C3HHeJ_G0035586.1 mouse_genomes_project X 90852178 90879612 - Zfx protein_coding processed_transcript MGP_C3HHeJ_T0096399.1 MGP_C3HHeJ_G0035586.1 mouse_genomes_project X 90869778 90879062 - Zfx protein_coding retained_intron MGP_C3HHeJ_T0099799.1 MGP_C3HHeJ_G0037993.1 mouse_genomes_project X 135784875 135784982 - Gm22057 snRNA snRNA MGP_C3HHeJ_T0016418.1 MGP_C3HHeJ_G0014522.1 mouse_genomes_project X 109214216 109214947 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095704.1 MGP_C3HHeJ_G0035405.1 mouse_genomes_project X 52157203 52176340 + MGP_C3HHeJ_P0095704 Zfp449 protein_coding protein_coding MGP_C3HHeJ_T0016359.1 MGP_C3HHeJ_G0014463.1 mouse_genomes_project X 100322372 100322891 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018381.1 MGP_C3HHeJ_G0015532.1 mouse_genomes_project X 14210775 14221410 - Gm14636 processed_transcript processed_transcript MGP_C3HHeJ_T0018382.1 MGP_C3HHeJ_G0015532.1 mouse_genomes_project X 14216229 14221419 - Gm14636 processed_transcript processed_transcript MGP_C3HHeJ_T0095473.1 MGP_C3HHeJ_G0035331.1 mouse_genomes_project X 33349761 33363214 + MGP_C3HHeJ_P0095473 Rhox10 protein_coding protein_coding MGP_C3HHeJ_T0097301.1 MGP_C3HHeJ_G0035848.1 mouse_genomes_project X 148917233 148952502 - MGP_C3HHeJ_P0097301 Gnl3l protein_coding protein_coding MGP_C3HHeJ_T0097302.1 MGP_C3HHeJ_G0035848.1 mouse_genomes_project X 148917233 148952502 - MGP_C3HHeJ_P0097302 Gnl3l protein_coding protein_coding MGP_C3HHeJ_T0097303.1 MGP_C3HHeJ_G0035848.1 mouse_genomes_project X 148922310 148928411 - Gnl3l protein_coding retained_intron MGP_C3HHeJ_T0097304.1 MGP_C3HHeJ_G0035848.1 mouse_genomes_project X 148931581 148934176 - Gnl3l protein_coding retained_intron MGP_C3HHeJ_T0097305.1 MGP_C3HHeJ_G0035848.1 mouse_genomes_project X 148931951 148952502 - MGP_C3HHeJ_P0097305 Gnl3l protein_coding protein_coding MGP_C3HHeJ_T0097306.1 MGP_C3HHeJ_G0035848.1 mouse_genomes_project X 148936606 148952502 - MGP_C3HHeJ_P0097306 Gnl3l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097307.1 MGP_C3HHeJ_G0035848.1 mouse_genomes_project X 148936650 148952502 - MGP_C3HHeJ_P0097307 Gnl3l protein_coding protein_coding MGP_C3HHeJ_T0096946.1 MGP_C3HHeJ_G0035746.1 mouse_genomes_project X 131803022 131847628 - MGP_C3HHeJ_P0096946 Btk protein_coding protein_coding MGP_C3HHeJ_T0096947.1 MGP_C3HHeJ_G0035746.1 mouse_genomes_project X 131803056 131847616 - MGP_C3HHeJ_P0096947 Btk protein_coding protein_coding MGP_C3HHeJ_T0096948.1 MGP_C3HHeJ_G0035746.1 mouse_genomes_project X 131809912 131847628 - Btk protein_coding retained_intron MGP_C3HHeJ_T0096949.1 MGP_C3HHeJ_G0035746.1 mouse_genomes_project X 131833140 131846961 - Btk protein_coding processed_transcript MGP_C3HHeJ_T0096950.1 MGP_C3HHeJ_G0035746.1 mouse_genomes_project X 131837420 131848057 - Btk protein_coding processed_transcript MGP_C3HHeJ_T0095373.1 MGP_C3HHeJ_G0035289.1 mouse_genomes_project X 16053931 16071145 - MGP_C3HHeJ_P0095373 Elk1 protein_coding protein_coding MGP_C3HHeJ_T0095374.1 MGP_C3HHeJ_G0035289.1 mouse_genomes_project X 16060257 16071145 - Elk1 protein_coding retained_intron MGP_C3HHeJ_T0096018.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70174734 70177724 - Naa10 protein_coding processed_transcript MGP_C3HHeJ_T0096019.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70174734 70179831 - MGP_C3HHeJ_P0096019 Naa10 protein_coding protein_coding MGP_C3HHeJ_T0096020.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70174736 70179811 - MGP_C3HHeJ_P0096020 Naa10 protein_coding protein_coding MGP_C3HHeJ_T0096021.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70174748 70179775 - MGP_C3HHeJ_P0096021 Naa10 protein_coding protein_coding MGP_C3HHeJ_T0096022.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70174757 70179771 - MGP_C3HHeJ_P0096022 Naa10 protein_coding protein_coding MGP_C3HHeJ_T0096023.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70174781 70179719 - MGP_C3HHeJ_P0096023 Naa10 protein_coding protein_coding MGP_C3HHeJ_T0096024.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70174953 70177766 - Naa10 protein_coding processed_transcript MGP_C3HHeJ_T0096025.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70175335 70179715 - MGP_C3HHeJ_P0096025 Naa10 protein_coding protein_coding MGP_C3HHeJ_T0096026.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70175722 70178324 - Naa10 protein_coding retained_intron MGP_C3HHeJ_T0096027.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70175930 70179793 - Naa10 protein_coding retained_intron MGP_C3HHeJ_T0096028.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70178863 70179742 - Naa10 protein_coding retained_intron MGP_C3HHeJ_T0096029.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70178999 70179739 - Naa10 protein_coding retained_intron MGP_C3HHeJ_T0095000.1 MGP_C3HHeJ_G0035191.1 mouse_genomes_project X 1787883 1823820 - MGP_C3HHeJ_P0095000 Clcn5 protein_coding protein_coding MGP_C3HHeJ_T0095001.1 MGP_C3HHeJ_G0035191.1 mouse_genomes_project X 1793542 1959812 - MGP_C3HHeJ_P0095001 Clcn5 protein_coding protein_coding MGP_C3HHeJ_T0095002.1 MGP_C3HHeJ_G0035191.1 mouse_genomes_project X 1794250 1823779 - Clcn5 protein_coding retained_intron MGP_C3HHeJ_T0095003.1 MGP_C3HHeJ_G0035191.1 mouse_genomes_project X 1805272 1959937 - MGP_C3HHeJ_P0095003 Clcn5 protein_coding protein_coding MGP_C3HHeJ_T0095004.1 MGP_C3HHeJ_G0035191.1 mouse_genomes_project X 1847928 1959749 - Clcn5 protein_coding processed_transcript MGP_C3HHeJ_T0016678.1 MGP_C3HHeJ_G0014782.1 mouse_genomes_project X 162898325 162901260 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016411.1 MGP_C3HHeJ_G0014515.1 mouse_genomes_project X 107195845 107197397 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016498.1 MGP_C3HHeJ_G0014602.1 mouse_genomes_project X 130329855 130331478 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016094.1 MGP_C3HHeJ_G0014198.1 mouse_genomes_project X 42799890 42800856 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018383.1 MGP_C3HHeJ_G0015533.1 mouse_genomes_project X 16082220 16107614 + A230072C01Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018384.1 MGP_C3HHeJ_G0015533.1 mouse_genomes_project X 16082650 16107628 + A230072C01Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016290.1 MGP_C3HHeJ_G0014394.1 mouse_genomes_project X 88166274 88166662 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095628.1 MGP_C3HHeJ_G0035371.1 mouse_genomes_project X 44154314 44163281 + MGP_C3HHeJ_P0095628 Rbmx2 protein_coding protein_coding MGP_C3HHeJ_T0095629.1 MGP_C3HHeJ_G0035371.1 mouse_genomes_project X 44158847 44161624 + Rbmx2 protein_coding processed_transcript MGP_C3HHeJ_T0096255.1 MGP_C3HHeJ_G0035534.1 mouse_genomes_project X 71460054 71477752 - MGP_C3HHeJ_P0096255 Smim9 protein_coding protein_coding MGP_C3HHeJ_T0096256.1 MGP_C3HHeJ_G0035534.1 mouse_genomes_project X 71460232 71475619 - MGP_C3HHeJ_P0096256 Smim9 protein_coding protein_coding MGP_C3HHeJ_T0096257.1 MGP_C3HHeJ_G0035534.1 mouse_genomes_project X 71463119 71477769 - Smim9 protein_coding processed_transcript MGP_C3HHeJ_T0011662.1 MGP_C3HHeJ_G0009795.1 mouse_genomes_project X 62544660 62544925 + Gm23028 misc_RNA misc_RNA MGP_C3HHeJ_T0015990.1 MGP_C3HHeJ_G0014094.1 mouse_genomes_project X 5905591 5906084 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095110.1 MGP_C3HHeJ_G0035210.1 mouse_genomes_project X 2557475 2567932 + MGP_C3HHeJ_P0095110 Slc35a2 protein_coding protein_coding MGP_C3HHeJ_T0095111.1 MGP_C3HHeJ_G0035210.1 mouse_genomes_project X 2557678 2567904 + MGP_C3HHeJ_P0095111 Slc35a2 protein_coding protein_coding MGP_C3HHeJ_T0095112.1 MGP_C3HHeJ_G0035210.1 mouse_genomes_project X 2557757 2567467 + MGP_C3HHeJ_P0095112 Slc35a2 protein_coding protein_coding MGP_C3HHeJ_T0095113.1 MGP_C3HHeJ_G0035210.1 mouse_genomes_project X 2557812 2567902 + MGP_C3HHeJ_P0095113 Slc35a2 protein_coding protein_coding MGP_C3HHeJ_T0095114.1 MGP_C3HHeJ_G0035210.1 mouse_genomes_project X 2559270 2567900 + MGP_C3HHeJ_P0095114 Slc35a2 protein_coding protein_coding MGP_C3HHeJ_T0095115.1 MGP_C3HHeJ_G0035210.1 mouse_genomes_project X 2566460 2567904 + Slc35a2 protein_coding processed_transcript MGP_C3HHeJ_T0016233.1 MGP_C3HHeJ_G0014337.1 mouse_genomes_project X 74690126 74690646 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016476.1 MGP_C3HHeJ_G0014580.1 mouse_genomes_project X 123492041 123492704 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016505.1 MGP_C3HHeJ_G0014609.1 mouse_genomes_project X 132111572 132112478 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016124.1 MGP_C3HHeJ_G0014228.1 mouse_genomes_project X 51582757 51583637 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095675.1 MGP_C3HHeJ_G0035388.1 mouse_genomes_project X 47499398 47614839 - MGP_C3HHeJ_P0095675 Gpc4 protein_coding protein_coding MGP_C3HHeJ_T0016170.1 MGP_C3HHeJ_G0014274.1 mouse_genomes_project X 61090834 61091737 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011119.1 MGP_C3HHeJ_G0009252.1 mouse_genomes_project X 133535743 133535859 + Mir6383 miRNA miRNA MGP_C3HHeJ_T0102349.1 MGP_C3HHeJ_G0040312.1 mouse_genomes_project X 71279956 71280094 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011096.1 MGP_C3HHeJ_G0009229.1 mouse_genomes_project X 81967639 81967722 + Gm44378 miRNA miRNA MGP_C3HHeJ_T0016209.1 MGP_C3HHeJ_G0014313.1 mouse_genomes_project X 70796950 70797421 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016518.1 MGP_C3HHeJ_G0014622.1 mouse_genomes_project X 133931332 133932454 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096994.1 MGP_C3HHeJ_G0035760.1 mouse_genomes_project X 132731889 132742988 + MGP_C3HHeJ_P0096994 protein_coding protein_coding MGP_C3HHeJ_T0011095.1 MGP_C3HHeJ_G0009228.1 mouse_genomes_project X 75203988 75204080 - Gm23556 miRNA miRNA MGP_C3HHeJ_T0009338.1 MGP_C3HHeJ_G0007482.1 mouse_genomes_project X 116856384 116858403 - Gm14929 lincRNA lincRNA MGP_C3HHeJ_T0016316.1 MGP_C3HHeJ_G0014420.1 mouse_genomes_project X 91455885 91457503 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016025.1 MGP_C3HHeJ_G0014129.1 mouse_genomes_project X 13982839 13983456 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016541.1 MGP_C3HHeJ_G0014645.1 mouse_genomes_project X 137254726 137255381 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097444.1 MGP_C3HHeJ_G0035884.1 mouse_genomes_project X 153860734 154589383 + MGP_C3HHeJ_P0097444 Gm15155 protein_coding protein_coding MGP_C3HHeJ_T0016235.1 MGP_C3HHeJ_G0014339.1 mouse_genomes_project X 74715221 74716299 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011066.1 MGP_C3HHeJ_G0009199.1 mouse_genomes_project X 62838397 62838459 - Mir743 miRNA miRNA MGP_C3HHeJ_T0097455.1 MGP_C3HHeJ_G0035888.1 mouse_genomes_project X 155819847 155822714 - MGP_C3HHeJ_P0097455 Yy2 protein_coding protein_coding MGP_C3HHeJ_T0096557.1 MGP_C3HHeJ_G0035627.1 mouse_genomes_project X 97732918 97952183 - MGP_C3HHeJ_P0096557 Tex11 protein_coding protein_coding MGP_C3HHeJ_T0096558.1 MGP_C3HHeJ_G0035627.1 mouse_genomes_project X 97732918 97952211 - MGP_C3HHeJ_P0096558 Tex11 protein_coding protein_coding MGP_C3HHeJ_T0096559.1 MGP_C3HHeJ_G0035627.1 mouse_genomes_project X 97765658 97952211 - MGP_C3HHeJ_P0096559 Tex11 protein_coding protein_coding MGP_C3HHeJ_T0016364.1 MGP_C3HHeJ_G0014468.1 mouse_genomes_project X 100595881 100596336 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011043.1 MGP_C3HHeJ_G0009176.1 mouse_genomes_project X 37325096 37325223 + Gm44490 miRNA miRNA MGP_C3HHeJ_T0016459.1 MGP_C3HHeJ_G0014563.1 mouse_genomes_project X 115859201 115860310 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097660.1 MGP_C3HHeJ_G0035938.1 mouse_genomes_project X 164944233 164957027 - MGP_C3HHeJ_P0097660 Tceanc protein_coding protein_coding MGP_C3HHeJ_T0097661.1 MGP_C3HHeJ_G0035938.1 mouse_genomes_project X 164946732 164947812 - MGP_C3HHeJ_P0097661 Tceanc protein_coding protein_coding MGP_C3HHeJ_T0097662.1 MGP_C3HHeJ_G0035938.1 mouse_genomes_project X 164947706 164965718 - MGP_C3HHeJ_P0097662 Tceanc protein_coding protein_coding MGP_C3HHeJ_T0101015.1 MGP_C3HHeJ_G0039209.1 mouse_genomes_project X 1863970 1864046 + Gm26401 snoRNA snoRNA MGP_C3HHeJ_T0016620.1 MGP_C3HHeJ_G0014724.1 mouse_genomes_project X 152569010 152569657 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095568.1 MGP_C3HHeJ_G0035356.1 mouse_genomes_project X 41750803 41752142 + MGP_C3HHeJ_P0095568 Actrt1 protein_coding protein_coding MGP_C3HHeJ_T0016461.1 MGP_C3HHeJ_G0014565.1 mouse_genomes_project X 117085223 117086512 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097419.1 MGP_C3HHeJ_G0035874.1 mouse_genomes_project X 151923345 151924631 + MGP_C3HHeJ_P0097419 Spin2c protein_coding protein_coding MGP_C3HHeJ_T0097420.1 MGP_C3HHeJ_G0035874.1 mouse_genomes_project X 151923361 151924644 + MGP_C3HHeJ_P0097420 Spin2c protein_coding protein_coding MGP_C3HHeJ_T0097421.1 MGP_C3HHeJ_G0035874.1 mouse_genomes_project X 151923413 151925364 + MGP_C3HHeJ_P0097421 Spin2c protein_coding protein_coding MGP_C3HHeJ_T0016657.1 MGP_C3HHeJ_G0014761.1 mouse_genomes_project X 158593809 158594072 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016114.1 MGP_C3HHeJ_G0014218.1 mouse_genomes_project X 48249506 48249918 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005543.1 MGP_C3HHeJ_G0004660.1 mouse_genomes_project X 158860197 158865935 - Gm15243 antisense antisense MGP_C3HHeJ_T0015963.1 MGP_C3HHeJ_G0014067.1 mouse_genomes_project X 687772 688282 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016444.1 MGP_C3HHeJ_G0014548.1 mouse_genomes_project X 112959687 112960541 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101057.1 MGP_C3HHeJ_G0039251.1 mouse_genomes_project X 140100682 140100808 - Gm25915 snoRNA snoRNA MGP_C3HHeJ_T0097612.1 MGP_C3HHeJ_G0035925.1 mouse_genomes_project X 162802720 162836106 + MGP_C3HHeJ_P0097612 Vegfd protein_coding protein_coding MGP_C3HHeJ_T0097613.1 MGP_C3HHeJ_G0035925.1 mouse_genomes_project X 162823472 162833084 + Vegfd protein_coding retained_intron MGP_C3HHeJ_T0018411.1 MGP_C3HHeJ_G0015542.1 mouse_genomes_project X 97631101 97634694 - Gm14866 processed_transcript processed_transcript MGP_C3HHeJ_T0096772.1 MGP_C3HHeJ_G0035687.1 mouse_genomes_project X 104371374 104390266 + MGP_C3HHeJ_P0096772 P2ry10 protein_coding protein_coding MGP_C3HHeJ_T0096773.1 MGP_C3HHeJ_G0035687.1 mouse_genomes_project X 104372116 104390270 + MGP_C3HHeJ_P0096773 P2ry10 protein_coding protein_coding MGP_C3HHeJ_T0096774.1 MGP_C3HHeJ_G0035687.1 mouse_genomes_project X 104372160 104390270 + MGP_C3HHeJ_P0096774 P2ry10 protein_coding protein_coding MGP_C3HHeJ_T0011059.1 MGP_C3HHeJ_G0009192.1 mouse_genomes_project X 48548396 48548467 - Mir503 miRNA miRNA MGP_C3HHeJ_T0011674.1 MGP_C3HHeJ_G0009807.1 mouse_genomes_project X 100726253 100726380 + Gm27285 misc_RNA misc_RNA MGP_C3HHeJ_T0016470.1 MGP_C3HHeJ_G0014574.1 mouse_genomes_project X 119038823 119041698 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097055.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134439485 134542863 - MGP_C3HHeJ_P0097055 Slc25a53 protein_coding protein_coding MGP_C3HHeJ_T0097056.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134439491 134495952 - MGP_C3HHeJ_P0097056 Slc25a53 protein_coding protein_coding MGP_C3HHeJ_T0097057.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134439491 134542841 - MGP_C3HHeJ_P0097057 Slc25a53 protein_coding protein_coding MGP_C3HHeJ_T0097058.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134441219 134495977 - MGP_C3HHeJ_P0097058 Slc25a53 protein_coding protein_coding MGP_C3HHeJ_T0097059.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134441361 134496009 - MGP_C3HHeJ_P0097059 Slc25a53 protein_coding protein_coding MGP_C3HHeJ_T0097064.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134504500 134534686 - Slc25a53 protein_coding retained_intron MGP_C3HHeJ_T0097065.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134504539 134542865 - Slc25a53 protein_coding processed_transcript MGP_C3HHeJ_T0097066.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134506273 134542595 - Slc25a53 protein_coding processed_transcript MGP_C3HHeJ_T0097067.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134506274 134542835 - Slc25a53 protein_coding processed_transcript MGP_C3HHeJ_T0097068.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134507042 134521706 - Slc25a53 protein_coding processed_transcript MGP_C3HHeJ_T0097069.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134519226 134542862 - Slc25a53 protein_coding processed_transcript MGP_C3HHeJ_T0097070.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134534608 134542587 - Slc25a53 protein_coding processed_transcript MGP_C3HHeJ_T0097071.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134536397 134542865 - Slc25a53 protein_coding retained_intron MGP_C3HHeJ_T0097072.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134537004 134542571 - Slc25a53 protein_coding processed_transcript MGP_C3HHeJ_T0016363.1 MGP_C3HHeJ_G0014467.1 mouse_genomes_project X 100440925 100441349 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097236.1 MGP_C3HHeJ_G0035839.1 mouse_genomes_project X 144673377 144796389 + Htr2c protein_coding retained_intron MGP_C3HHeJ_T0097237.1 MGP_C3HHeJ_G0035839.1 mouse_genomes_project X 144673377 144702355 + Htr2c protein_coding retained_intron MGP_C3HHeJ_T0097238.1 MGP_C3HHeJ_G0035839.1 mouse_genomes_project X 144673494 144790853 + Htr2c protein_coding processed_transcript MGP_C3HHeJ_T0097239.1 MGP_C3HHeJ_G0035839.1 mouse_genomes_project X 144673583 144924606 + MGP_C3HHeJ_P0097239 Htr2c protein_coding protein_coding MGP_C3HHeJ_T0097240.1 MGP_C3HHeJ_G0035839.1 mouse_genomes_project X 144673887 144903843 + MGP_C3HHeJ_P0097240 Htr2c protein_coding protein_coding MGP_C3HHeJ_T0101035.1 MGP_C3HHeJ_G0039229.1 mouse_genomes_project X 78688180 78688317 - Gm24706 snoRNA snoRNA MGP_C3HHeJ_T0096659.1 MGP_C3HHeJ_G0035650.1 mouse_genomes_project X 99211601 99216402 - MGP_C3HHeJ_P0096659 Cited1 protein_coding protein_coding MGP_C3HHeJ_T0096660.1 MGP_C3HHeJ_G0035650.1 mouse_genomes_project X 99211624 99216073 - MGP_C3HHeJ_P0096660 Cited1 protein_coding protein_coding MGP_C3HHeJ_T0096661.1 MGP_C3HHeJ_G0035650.1 mouse_genomes_project X 99211934 99215167 - MGP_C3HHeJ_P0096661 Cited1 protein_coding protein_coding MGP_C3HHeJ_T0096662.1 MGP_C3HHeJ_G0035650.1 mouse_genomes_project X 99212041 99214996 - MGP_C3HHeJ_P0096662 Cited1 protein_coding protein_coding MGP_C3HHeJ_T0096663.1 MGP_C3HHeJ_G0035650.1 mouse_genomes_project X 99212106 99216139 - MGP_C3HHeJ_P0096663 Cited1 protein_coding protein_coding MGP_C3HHeJ_T0099745.1 MGP_C3HHeJ_G0037939.1 mouse_genomes_project X 10707155 10707262 - Gm25207 snRNA snRNA MGP_C3HHeJ_T0016423.1 MGP_C3HHeJ_G0014527.1 mouse_genomes_project X 109952408 109952571 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016402.1 MGP_C3HHeJ_G0014506.1 mouse_genomes_project X 104535634 104536105 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016175.1 MGP_C3HHeJ_G0014279.1 mouse_genomes_project X 63047431 63048868 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095912.1 MGP_C3HHeJ_G0035476.1 mouse_genomes_project X 69355989 69363889 + MGP_C3HHeJ_P0095912 protein_coding protein_coding MGP_C3HHeJ_T0016082.1 MGP_C3HHeJ_G0014186.1 mouse_genomes_project X 39104222 39104940 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101071.1 MGP_C3HHeJ_G0039265.1 mouse_genomes_project X 165845466 165845584 - Gm26368 snoRNA snoRNA MGP_C3HHeJ_T0095128.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2605594 2623962 - MGP_C3HHeJ_P0095128 Hdac6 protein_coding protein_coding MGP_C3HHeJ_T0095129.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2605596 2623962 - MGP_C3HHeJ_P0095129 Hdac6 protein_coding protein_coding MGP_C3HHeJ_T0095130.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2605598 2623911 - Hdac6 protein_coding retained_intron MGP_C3HHeJ_T0095131.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2606833 2623962 - MGP_C3HHeJ_P0095131 Hdac6 protein_coding protein_coding MGP_C3HHeJ_T0095132.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2607029 2610062 - Hdac6 protein_coding retained_intron MGP_C3HHeJ_T0095133.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2613374 2614725 - Hdac6 protein_coding retained_intron MGP_C3HHeJ_T0095134.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2613481 2616017 - Hdac6 protein_coding retained_intron MGP_C3HHeJ_T0095135.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2619429 2623232 - Hdac6 protein_coding retained_intron MGP_C3HHeJ_T0095136.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2619453 2623626 - MGP_C3HHeJ_P0095136 Hdac6 protein_coding protein_coding MGP_C3HHeJ_T0095137.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2623024 2623840 - MGP_C3HHeJ_P0095137 Hdac6 protein_coding protein_coding MGP_C3HHeJ_T0011681.1 MGP_C3HHeJ_G0009814.1 mouse_genomes_project X 134152044 134152337 + Gm23068 misc_RNA misc_RNA MGP_C3HHeJ_T0095204.1 MGP_C3HHeJ_G0035238.1 mouse_genomes_project X 3936843 3937722 + MGP_C3HHeJ_P0095204 protein_coding protein_coding MGP_C3HHeJ_T0016009.1 MGP_C3HHeJ_G0014113.1 mouse_genomes_project X 8900706 8902931 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098235.1 MGP_C3HHeJ_G0036447.1 mouse_genomes_project X 160600217 160600345 + Gm27490 rRNA rRNA MGP_C3HHeJ_T0016177.1 MGP_C3HHeJ_G0014281.1 mouse_genomes_project X 63050324 63050849 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096289.1 MGP_C3HHeJ_G0035544.1 mouse_genomes_project X 72656553 72659983 + MGP_C3HHeJ_P0096289 Cldn34b3 protein_coding protein_coding MGP_C3HHeJ_T0097578.1 MGP_C3HHeJ_G0035913.1 mouse_genomes_project X 161358792 161361392 - MGP_C3HHeJ_P0097578 S100g protein_coding protein_coding MGP_C3HHeJ_T0097135.1 MGP_C3HHeJ_G0035809.1 mouse_genomes_project X 137611957 137657518 + MGP_C3HHeJ_P0097135 Pih1h3b protein_coding protein_coding MGP_C3HHeJ_T0096906.1 MGP_C3HHeJ_G0035736.1 mouse_genomes_project X 131163959 131188343 - MGP_C3HHeJ_P0096906 Sytl4 protein_coding protein_coding MGP_C3HHeJ_T0096907.1 MGP_C3HHeJ_G0035736.1 mouse_genomes_project X 131172538 131207952 - MGP_C3HHeJ_P0096907 Sytl4 protein_coding protein_coding MGP_C3HHeJ_T0096908.1 MGP_C3HHeJ_G0035736.1 mouse_genomes_project X 131176396 131187098 - Sytl4 protein_coding processed_transcript MGP_C3HHeJ_T0096909.1 MGP_C3HHeJ_G0035736.1 mouse_genomes_project X 131178438 131207949 - MGP_C3HHeJ_P0096909 Sytl4 protein_coding protein_coding MGP_C3HHeJ_T0016066.1 MGP_C3HHeJ_G0014170.1 mouse_genomes_project X 35382797 35383468 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101055.1 MGP_C3HHeJ_G0039249.1 mouse_genomes_project X 134598581 134598696 - Gm25770 snoRNA snoRNA MGP_C3HHeJ_T0095890.1 MGP_C3HHeJ_G0035465.1 mouse_genomes_project X 68440058 68458848 - MGP_C3HHeJ_P0095890 Gabre protein_coding protein_coding MGP_C3HHeJ_T0095891.1 MGP_C3HHeJ_G0035465.1 mouse_genomes_project X 68445429 68453827 - Gabre protein_coding processed_transcript MGP_C3HHeJ_T0095892.1 MGP_C3HHeJ_G0035465.1 mouse_genomes_project X 68453031 68458848 - Gabre protein_coding retained_intron MGP_C3HHeJ_T0015987.1 MGP_C3HHeJ_G0014091.1 mouse_genomes_project X 4146180 4146444 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095564.1 MGP_C3HHeJ_G0035353.1 mouse_genomes_project X 39741547 39744432 - MGP_C3HHeJ_P0095564 Dcaf12l2 protein_coding protein_coding MGP_C3HHeJ_T0097434.1 MGP_C3HHeJ_G0035881.1 mouse_genomes_project X 153478487 153479627 + Acot9 protein_coding processed_transcript MGP_C3HHeJ_T0097435.1 MGP_C3HHeJ_G0035881.1 mouse_genomes_project X 153478487 153514996 + MGP_C3HHeJ_P0097435 Acot9 protein_coding protein_coding MGP_C3HHeJ_T0097436.1 MGP_C3HHeJ_G0035881.1 mouse_genomes_project X 153478549 153514988 + MGP_C3HHeJ_P0097436 Acot9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097437.1 MGP_C3HHeJ_G0035881.1 mouse_genomes_project X 153511184 153514255 + Acot9 protein_coding retained_intron MGP_C3HHeJ_T0016508.1 MGP_C3HHeJ_G0014612.1 mouse_genomes_project X 132190710 132191343 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016437.1 MGP_C3HHeJ_G0014541.1 mouse_genomes_project X 112015795 112016002 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016376.1 MGP_C3HHeJ_G0014480.1 mouse_genomes_project X 101068402 101069851 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016523.1 MGP_C3HHeJ_G0014627.1 mouse_genomes_project X 134346667 134347125 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015995.1 MGP_C3HHeJ_G0014099.1 mouse_genomes_project X 6822583 6822782 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018375.1 MGP_C3HHeJ_G0015528.1 mouse_genomes_project X 2373706 2383185 + processed_transcript processed_transcript MGP_C3HHeJ_T0101060.1 MGP_C3HHeJ_G0039254.1 mouse_genomes_project X 145213900 145214029 - Gm25107 snoRNA snoRNA MGP_C3HHeJ_T0096220.1 MGP_C3HHeJ_G0035521.1 mouse_genomes_project X 70866893 70867829 - MGP_C3HHeJ_P0096220 Olfr1326-ps1 protein_coding protein_coding MGP_C3HHeJ_T0095199.1 MGP_C3HHeJ_G0035233.1 mouse_genomes_project X 3446865 3448577 - MGP_C3HHeJ_P0095199 protein_coding protein_coding MGP_C3HHeJ_T0096080.1 MGP_C3HHeJ_G0035503.1 mouse_genomes_project X 70416322 70432367 - MGP_C3HHeJ_P0096080 Tex28 protein_coding protein_coding MGP_C3HHeJ_T0096081.1 MGP_C3HHeJ_G0035503.1 mouse_genomes_project X 70416322 70432367 - MGP_C3HHeJ_P0096081 Tex28 protein_coding protein_coding MGP_C3HHeJ_T0016633.1 MGP_C3HHeJ_G0014737.1 mouse_genomes_project X 155023332 155023615 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097037.1 MGP_C3HHeJ_G0035777.1 mouse_genomes_project X 133602638 133605448 + MGP_C3HHeJ_P0097037 Wbp5 protein_coding protein_coding MGP_C3HHeJ_T0097038.1 MGP_C3HHeJ_G0035777.1 mouse_genomes_project X 133603242 133605448 + MGP_C3HHeJ_P0097038 Wbp5 protein_coding protein_coding MGP_C3HHeJ_T0095459.1 MGP_C3HHeJ_G0035320.1 mouse_genomes_project X 32386926 32411614 + MGP_C3HHeJ_P0095459 Nkap protein_coding protein_coding MGP_C3HHeJ_T0095460.1 MGP_C3HHeJ_G0035320.1 mouse_genomes_project X 32396418 32401736 + Nkap protein_coding retained_intron MGP_C3HHeJ_T0016631.1 MGP_C3HHeJ_G0014735.1 mouse_genomes_project X 154773513 154774520 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095691.1 MGP_C3HHeJ_G0035395.1 mouse_genomes_project X 48773982 48801875 + MGP_C3HHeJ_P0095691 Fam122c protein_coding protein_coding MGP_C3HHeJ_T0095692.1 MGP_C3HHeJ_G0035395.1 mouse_genomes_project X 48773982 48831488 + MGP_C3HHeJ_P0095692 Fam122c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095693.1 MGP_C3HHeJ_G0035395.1 mouse_genomes_project X 48773991 48831488 + MGP_C3HHeJ_P0095693 Fam122c protein_coding protein_coding MGP_C3HHeJ_T0016015.1 MGP_C3HHeJ_G0014119.1 mouse_genomes_project X 11286455 11286842 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016641.1 MGP_C3HHeJ_G0014745.1 mouse_genomes_project X 155901734 155902330 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097230.1 MGP_C3HHeJ_G0035837.1 mouse_genomes_project X 142967535 143028032 - MGP_C3HHeJ_P0097230 Lhfpl1 protein_coding protein_coding MGP_C3HHeJ_T0097231.1 MGP_C3HHeJ_G0035837.1 mouse_genomes_project X 143020104 143028171 - MGP_C3HHeJ_P0097231 Lhfpl1 protein_coding protein_coding MGP_C3HHeJ_T0099805.1 MGP_C3HHeJ_G0037999.1 mouse_genomes_project X 149210775 149210879 - Gm26441 snRNA snRNA MGP_C3HHeJ_T0095219.1 MGP_C3HHeJ_G0035246.1 mouse_genomes_project X 4713063 4713616 + MGP_C3HHeJ_P0095219 4930557A04Rik protein_coding protein_coding MGP_C3HHeJ_T0011069.1 MGP_C3HHeJ_G0009202.1 mouse_genomes_project X 62842160 62842236 - Mir883a miRNA miRNA MGP_C3HHeJ_T0095879.1 MGP_C3HHeJ_G0035460.1 mouse_genomes_project X 68111272 68128470 + MGP_C3HHeJ_P0095879 Gm1141 protein_coding protein_coding MGP_C3HHeJ_T0095880.1 MGP_C3HHeJ_G0035460.1 mouse_genomes_project X 68116951 68124525 + MGP_C3HHeJ_P0095880 Gm1141 protein_coding protein_coding MGP_C3HHeJ_T0016613.1 MGP_C3HHeJ_G0014717.1 mouse_genomes_project X 151166231 151166763 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009337.1 MGP_C3HHeJ_G0007481.1 mouse_genomes_project X 114672767 114673136 + Gm28579 lincRNA lincRNA MGP_C3HHeJ_T0016591.1 MGP_C3HHeJ_G0014695.1 mouse_genomes_project X 143971710 143972756 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016002.1 MGP_C3HHeJ_G0014106.1 mouse_genomes_project X 7873933 7875190 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095125.1 MGP_C3HHeJ_G0035214.1 mouse_genomes_project X 2584677 2585169 + MGP_C3HHeJ_P0095125 Gm10490 protein_coding protein_coding MGP_C3HHeJ_T0099742.1 MGP_C3HHeJ_G0037936.1 mouse_genomes_project X 6757028 6757135 + Gm26314 snRNA snRNA MGP_C3HHeJ_T0095922.1 MGP_C3HHeJ_G0035482.1 mouse_genomes_project X 69712994 69723199 + Bgn protein_coding processed_transcript MGP_C3HHeJ_T0095923.1 MGP_C3HHeJ_G0035482.1 mouse_genomes_project X 69712994 69728711 + MGP_C3HHeJ_P0095923 Bgn protein_coding protein_coding MGP_C3HHeJ_T0095924.1 MGP_C3HHeJ_G0035482.1 mouse_genomes_project X 69713015 69722851 + Bgn protein_coding retained_intron MGP_C3HHeJ_T0095925.1 MGP_C3HHeJ_G0035482.1 mouse_genomes_project X 69713025 69715690 + Bgn protein_coding retained_intron MGP_C3HHeJ_T0095926.1 MGP_C3HHeJ_G0035482.1 mouse_genomes_project X 69713027 69728707 + MGP_C3HHeJ_P0095926 Bgn protein_coding protein_coding MGP_C3HHeJ_T0095927.1 MGP_C3HHeJ_G0035482.1 mouse_genomes_project X 69713031 69722835 + Bgn protein_coding retained_intron MGP_C3HHeJ_T0095928.1 MGP_C3HHeJ_G0035482.1 mouse_genomes_project X 69722509 69723763 + Bgn protein_coding processed_transcript MGP_C3HHeJ_T0095929.1 MGP_C3HHeJ_G0035482.1 mouse_genomes_project X 69727679 69728704 + Bgn protein_coding processed_transcript MGP_C3HHeJ_T0016053.1 MGP_C3HHeJ_G0014157.1 mouse_genomes_project X 31898718 31899515 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097205.1 MGP_C3HHeJ_G0035833.1 mouse_genomes_project X 141496262 141576556 - MGP_C3HHeJ_P0097205 Dcx protein_coding protein_coding MGP_C3HHeJ_T0097206.1 MGP_C3HHeJ_G0035833.1 mouse_genomes_project X 141501131 141576449 - MGP_C3HHeJ_P0097206 Dcx protein_coding protein_coding MGP_C3HHeJ_T0097207.1 MGP_C3HHeJ_G0035833.1 mouse_genomes_project X 141502202 141576369 - MGP_C3HHeJ_P0097207 Dcx protein_coding protein_coding MGP_C3HHeJ_T0097208.1 MGP_C3HHeJ_G0035833.1 mouse_genomes_project X 141503893 141576464 - MGP_C3HHeJ_P0097208 Dcx protein_coding protein_coding MGP_C3HHeJ_T0097209.1 MGP_C3HHeJ_G0035833.1 mouse_genomes_project X 141509630 141576295 - Dcx protein_coding retained_intron MGP_C3HHeJ_T0097210.1 MGP_C3HHeJ_G0035833.1 mouse_genomes_project X 141514142 141576364 - Dcx protein_coding retained_intron MGP_C3HHeJ_T0011028.1 MGP_C3HHeJ_G0009161.1 mouse_genomes_project X 1882721 1882817 - Mir532 miRNA miRNA MGP_C3HHeJ_T0095356.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15912848 15979283 + MGP_C3HHeJ_P0095356 Araf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095357.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15966698 15979305 + MGP_C3HHeJ_P0095357 Araf protein_coding protein_coding MGP_C3HHeJ_T0095358.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15966719 15974296 + Araf protein_coding retained_intron MGP_C3HHeJ_T0095359.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15966721 15971074 + MGP_C3HHeJ_P0095359 Araf protein_coding protein_coding MGP_C3HHeJ_T0095360.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15966730 15972730 + Araf protein_coding processed_transcript MGP_C3HHeJ_T0095361.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15966733 15971059 + MGP_C3HHeJ_P0095361 Araf protein_coding protein_coding MGP_C3HHeJ_T0095362.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15966737 15969887 + Araf protein_coding retained_intron MGP_C3HHeJ_T0095363.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15966744 15971620 + MGP_C3HHeJ_P0095363 Araf protein_coding protein_coding MGP_C3HHeJ_T0095364.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15969299 15970384 + Araf protein_coding retained_intron MGP_C3HHeJ_T0095365.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15971587 15978899 + MGP_C3HHeJ_P0095365 Araf protein_coding unknown_likely_coding MGP_C3HHeJ_T0095366.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15976508 15978994 + MGP_C3HHeJ_P0095366 Araf protein_coding protein_coding MGP_C3HHeJ_T0016656.1 MGP_C3HHeJ_G0014760.1 mouse_genomes_project X 158357658 158358156 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016198.1 MGP_C3HHeJ_G0014302.1 mouse_genomes_project X 67666985 67667290 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097024.1 MGP_C3HHeJ_G0035771.1 mouse_genomes_project X 133414637 133416500 - MGP_C3HHeJ_P0097024 Bex2 protein_coding protein_coding MGP_C3HHeJ_T0096202.1 MGP_C3HHeJ_G0035519.1 mouse_genomes_project X 70689185 70710204 - MGP_C3HHeJ_P0096202 G6pdx protein_coding protein_coding MGP_C3HHeJ_T0096203.1 MGP_C3HHeJ_G0035519.1 mouse_genomes_project X 70690561 70709886 - MGP_C3HHeJ_P0096203 G6pdx protein_coding protein_coding MGP_C3HHeJ_T0096210.1 MGP_C3HHeJ_G0035519.1 mouse_genomes_project X 70708696 70709890 - G6pdx protein_coding retained_intron MGP_C3HHeJ_T0011098.1 MGP_C3HHeJ_G0009231.1 mouse_genomes_project X 91170249 91170359 - Gm44477 miRNA miRNA MGP_C3HHeJ_T0096961.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131993511 131997416 + MGP_C3HHeJ_P0096961 Armcx1 protein_coding protein_coding MGP_C3HHeJ_T0096962.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131993518 131997425 + MGP_C3HHeJ_P0096962 Armcx1 protein_coding protein_coding MGP_C3HHeJ_T0096963.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131993536 131994869 + Armcx1 protein_coding processed_transcript MGP_C3HHeJ_T0096964.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131993536 131997418 + MGP_C3HHeJ_P0096964 Armcx1 protein_coding protein_coding MGP_C3HHeJ_T0096965.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131993537 131997425 + MGP_C3HHeJ_P0096965 Armcx1 protein_coding protein_coding MGP_C3HHeJ_T0096966.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131993551 131995063 + Armcx1 protein_coding processed_transcript MGP_C3HHeJ_T0096967.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131993551 131994584 + Armcx1 protein_coding processed_transcript MGP_C3HHeJ_T0096968.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131993561 131997416 + MGP_C3HHeJ_P0096968 Armcx1 protein_coding protein_coding MGP_C3HHeJ_T0096969.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131993568 131997425 + MGP_C3HHeJ_P0096969 Armcx1 protein_coding protein_coding MGP_C3HHeJ_T0096970.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131994812 131996023 + Armcx1 protein_coding processed_transcript MGP_C3HHeJ_T0016606.1 MGP_C3HHeJ_G0014710.1 mouse_genomes_project X 149435420 149435576 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016157.1 MGP_C3HHeJ_G0014261.1 mouse_genomes_project X 57794800 57795866 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096815.1 MGP_C3HHeJ_G0035701.1 mouse_genomes_project X 108123313 108126244 + MGP_C3HHeJ_P0096815 Pou3f4 protein_coding protein_coding MGP_C3HHeJ_T0096537.1 MGP_C3HHeJ_G0035623.1 mouse_genomes_project X 97514251 97517307 - Pdzd11 protein_coding retained_intron MGP_C3HHeJ_T0096538.1 MGP_C3HHeJ_G0035623.1 mouse_genomes_project X 97514254 97517937 - MGP_C3HHeJ_P0096538 Pdzd11 protein_coding protein_coding MGP_C3HHeJ_T0096539.1 MGP_C3HHeJ_G0035623.1 mouse_genomes_project X 97514276 97517304 - MGP_C3HHeJ_P0096539 Pdzd11 protein_coding protein_coding MGP_C3HHeJ_T0096540.1 MGP_C3HHeJ_G0035623.1 mouse_genomes_project X 97514745 97517640 - Pdzd11 protein_coding processed_transcript MGP_C3HHeJ_T0016499.1 MGP_C3HHeJ_G0014603.1 mouse_genomes_project X 130446931 130447965 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016281.1 MGP_C3HHeJ_G0014385.1 mouse_genomes_project X 85858999 85859339 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099764.1 MGP_C3HHeJ_G0037958.1 mouse_genomes_project X 53872755 53872862 + Gm25023 snRNA snRNA MGP_C3HHeJ_T0095432.1 MGP_C3HHeJ_G0035311.1 mouse_genomes_project X 31980677 32019561 + MGP_C3HHeJ_P0095432 Slc25a43 protein_coding protein_coding MGP_C3HHeJ_T0095433.1 MGP_C3HHeJ_G0035311.1 mouse_genomes_project X 31980729 32016681 + Slc25a43 protein_coding processed_transcript MGP_C3HHeJ_T0016266.1 MGP_C3HHeJ_G0014370.1 mouse_genomes_project X 84096766 84097644 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101047.1 MGP_C3HHeJ_G0039241.1 mouse_genomes_project X 124037483 124037606 + Gm23586 snoRNA snoRNA MGP_C3HHeJ_T0095042.1 MGP_C3HHeJ_G0035200.1 mouse_genomes_project X 2318655 2328443 - Magix protein_coding processed_transcript MGP_C3HHeJ_T0095043.1 MGP_C3HHeJ_G0035200.1 mouse_genomes_project X 2320117 2328281 - MGP_C3HHeJ_P0095043 Magix protein_coding protein_coding MGP_C3HHeJ_T0009320.1 MGP_C3HHeJ_G0007475.1 mouse_genomes_project X 100602955 100616204 + Jpx lincRNA lincRNA MGP_C3HHeJ_T0009321.1 MGP_C3HHeJ_G0007475.1 mouse_genomes_project X 100602974 100604018 + Jpx lincRNA lincRNA MGP_C3HHeJ_T0009322.1 MGP_C3HHeJ_G0007475.1 mouse_genomes_project X 100603167 100612890 + Jpx lincRNA lincRNA MGP_C3HHeJ_T0009323.1 MGP_C3HHeJ_G0007475.1 mouse_genomes_project X 100603192 100612611 + Jpx lincRNA lincRNA MGP_C3HHeJ_T0016179.1 MGP_C3HHeJ_G0014283.1 mouse_genomes_project X 63696055 63696970 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095715.1 MGP_C3HHeJ_G0035410.1 mouse_genomes_project X 52419763 52432321 - MGP_C3HHeJ_P0095715 Mmgt1 protein_coding protein_coding MGP_C3HHeJ_T0016105.1 MGP_C3HHeJ_G0014209.1 mouse_genomes_project X 45973476 45973859 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016131.1 MGP_C3HHeJ_G0014235.1 mouse_genomes_project X 53620544 53622553 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095666.1 MGP_C3HHeJ_G0035385.1 mouse_genomes_project X 46824631 47130468 - MGP_C3HHeJ_P0095666 Hs6st2 protein_coding protein_coding MGP_C3HHeJ_T0095667.1 MGP_C3HHeJ_G0035385.1 mouse_genomes_project X 46824631 47130621 - MGP_C3HHeJ_P0095667 Hs6st2 protein_coding protein_coding MGP_C3HHeJ_T0095668.1 MGP_C3HHeJ_G0035385.1 mouse_genomes_project X 47125547 47130113 - Hs6st2 protein_coding retained_intron MGP_C3HHeJ_T0095669.1 MGP_C3HHeJ_G0035385.1 mouse_genomes_project X 47128756 47129330 - Hs6st2 protein_coding processed_transcript MGP_C3HHeJ_T0095670.1 MGP_C3HHeJ_G0035385.1 mouse_genomes_project X 47128942 47129851 - Hs6st2 protein_coding processed_transcript MGP_C3HHeJ_T0096222.1 MGP_C3HHeJ_G0035523.1 mouse_genomes_project X 71129918 71158808 - MGP_C3HHeJ_P0096222 protein_coding protein_coding MGP_C3HHeJ_T0094997.1 MGP_C3HHeJ_G0035190.1 mouse_genomes_project X 1688173 1711166 + MGP_C3HHeJ_P0094997 Akap4 protein_coding protein_coding MGP_C3HHeJ_T0094998.1 MGP_C3HHeJ_G0035190.1 mouse_genomes_project X 1688174 1711161 + MGP_C3HHeJ_P0094998 Akap4 protein_coding protein_coding MGP_C3HHeJ_T0094999.1 MGP_C3HHeJ_G0035190.1 mouse_genomes_project X 1688867 1711148 + MGP_C3HHeJ_P0094999 Akap4 protein_coding protein_coding MGP_C3HHeJ_T0016665.1 MGP_C3HHeJ_G0014769.1 mouse_genomes_project X 160962380 160962834 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096298.1 MGP_C3HHeJ_G0035550.1 mouse_genomes_project X 74163050 74178544 - MGP_C3HHeJ_P0096298 Pbsn protein_coding protein_coding MGP_C3HHeJ_T0096299.1 MGP_C3HHeJ_G0035550.1 mouse_genomes_project X 74163051 74178451 - MGP_C3HHeJ_P0096299 Pbsn protein_coding protein_coding MGP_C3HHeJ_T0097401.1 MGP_C3HHeJ_G0035865.1 mouse_genomes_project X 151033671 151036619 + MGP_C3HHeJ_P0097401 Usp51 protein_coding protein_coding MGP_C3HHeJ_T0096571.1 MGP_C3HHeJ_G0035630.1 mouse_genomes_project X 98160345 98166911 + MGP_C3HHeJ_P0096571 Foxo4 protein_coding protein_coding MGP_C3HHeJ_T0096572.1 MGP_C3HHeJ_G0035630.1 mouse_genomes_project X 98160384 98162253 + Foxo4 protein_coding processed_transcript MGP_C3HHeJ_T0096573.1 MGP_C3HHeJ_G0035630.1 mouse_genomes_project X 98160638 98165051 + MGP_C3HHeJ_P0096573 Foxo4 protein_coding protein_coding MGP_C3HHeJ_T0016668.1 MGP_C3HHeJ_G0014772.1 mouse_genomes_project X 161171250 161218805 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005546.1 MGP_C3HHeJ_G0004663.1 mouse_genomes_project X 167553692 167625434 - Gm15261 antisense antisense MGP_C3HHeJ_T0095311.1 MGP_C3HHeJ_G0035275.1 mouse_genomes_project X 15133465 15171670 + MGP_C3HHeJ_P0095311 Chst7 protein_coding protein_coding MGP_C3HHeJ_T0102356.1 MGP_C3HHeJ_G0040319.1 mouse_genomes_project X 82731307 82732340 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0097025.1 MGP_C3HHeJ_G0035772.1 mouse_genomes_project X 133420361 133433557 - MGP_C3HHeJ_P0097025 Nxf3 protein_coding protein_coding MGP_C3HHeJ_T0097026.1 MGP_C3HHeJ_G0035772.1 mouse_genomes_project X 133427873 133433544 - MGP_C3HHeJ_P0097026 Nxf3 protein_coding protein_coding MGP_C3HHeJ_T0101053.1 MGP_C3HHeJ_G0039247.1 mouse_genomes_project X 132672109 132672223 - Gm25868 snoRNA snoRNA MGP_C3HHeJ_T0015989.1 MGP_C3HHeJ_G0014093.1 mouse_genomes_project X 5586444 5586877 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011110.1 MGP_C3HHeJ_G0009243.1 mouse_genomes_project X 102592286 102592384 - Mir325 miRNA miRNA MGP_C3HHeJ_T0016156.1 MGP_C3HHeJ_G0014260.1 mouse_genomes_project X 57745329 57746117 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011128.1 MGP_C3HHeJ_G0009261.1 mouse_genomes_project X 144783228 144783326 + Mir1298 miRNA miRNA MGP_C3HHeJ_T0016548.1 MGP_C3HHeJ_G0014652.1 mouse_genomes_project X 138399737 138400323 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016245.1 MGP_C3HHeJ_G0014349.1 mouse_genomes_project X 76688779 76689464 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099772.1 MGP_C3HHeJ_G0037966.1 mouse_genomes_project X 71303085 71303192 - Gm25629 snRNA snRNA MGP_C3HHeJ_T0096219.1 MGP_C3HHeJ_G0035520.1 mouse_genomes_project X 70760368 70761628 - MGP_C3HHeJ_P0096219 protein_coding protein_coding MGP_C3HHeJ_T0015997.1 MGP_C3HHeJ_G0014101.1 mouse_genomes_project X 7096867 7097217 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097581.1 MGP_C3HHeJ_G0035916.1 mouse_genomes_project X 162335869 162361357 + MGP_C3HHeJ_P0097581 Ap1s2 protein_coding protein_coding MGP_C3HHeJ_T0097582.1 MGP_C3HHeJ_G0035916.1 mouse_genomes_project X 162335994 162361050 + MGP_C3HHeJ_P0097582 Ap1s2 protein_coding protein_coding MGP_C3HHeJ_T0097583.1 MGP_C3HHeJ_G0035916.1 mouse_genomes_project X 162335997 162357237 + MGP_C3HHeJ_P0097583 Ap1s2 protein_coding protein_coding MGP_C3HHeJ_T0097584.1 MGP_C3HHeJ_G0035916.1 mouse_genomes_project X 162338253 162361047 + MGP_C3HHeJ_P0097584 Ap1s2 protein_coding protein_coding MGP_C3HHeJ_T0095782.1 MGP_C3HHeJ_G0035428.1 mouse_genomes_project X 56134953 56516756 - MGP_C3HHeJ_P0095782 Atp11c protein_coding protein_coding MGP_C3HHeJ_T0095783.1 MGP_C3HHeJ_G0035428.1 mouse_genomes_project X 56134956 56321347 - MGP_C3HHeJ_P0095783 Atp11c protein_coding protein_coding MGP_C3HHeJ_T0095784.1 MGP_C3HHeJ_G0035428.1 mouse_genomes_project X 56134956 56321347 - MGP_C3HHeJ_P0095784 Atp11c protein_coding protein_coding MGP_C3HHeJ_T0095785.1 MGP_C3HHeJ_G0035428.1 mouse_genomes_project X 56137286 56179111 - Atp11c protein_coding processed_transcript MGP_C3HHeJ_T0095786.1 MGP_C3HHeJ_G0035428.1 mouse_genomes_project X 56141589 56321197 - MGP_C3HHeJ_P0095786 Atp11c protein_coding unknown_likely_coding MGP_C3HHeJ_T0095787.1 MGP_C3HHeJ_G0035428.1 mouse_genomes_project X 56147126 56516756 - Atp11c protein_coding processed_transcript MGP_C3HHeJ_T0099774.1 MGP_C3HHeJ_G0037968.1 mouse_genomes_project X 73893143 73893316 + Gm23121 snRNA snRNA MGP_C3HHeJ_T0097086.1 MGP_C3HHeJ_G0035795.1 mouse_genomes_project X 136595603 136601564 - MGP_C3HHeJ_P0097086 Serpina7 protein_coding protein_coding MGP_C3HHeJ_T0097087.1 MGP_C3HHeJ_G0035795.1 mouse_genomes_project X 136595603 136601562 - MGP_C3HHeJ_P0097087 Serpina7 protein_coding protein_coding MGP_C3HHeJ_T0097088.1 MGP_C3HHeJ_G0035795.1 mouse_genomes_project X 136599832 136601583 - MGP_C3HHeJ_P0097088 Serpina7 protein_coding protein_coding MGP_C3HHeJ_T0097398.1 MGP_C3HHeJ_G0035864.1 mouse_genomes_project X 150796589 150814752 + Gpr143 protein_coding processed_transcript MGP_C3HHeJ_T0097399.1 MGP_C3HHeJ_G0035864.1 mouse_genomes_project X 150796654 150827012 + MGP_C3HHeJ_P0097399 Gpr143 protein_coding protein_coding MGP_C3HHeJ_T0097400.1 MGP_C3HHeJ_G0035864.1 mouse_genomes_project X 150796686 150810131 + Gpr143 protein_coding retained_intron MGP_C3HHeJ_T0097593.1 MGP_C3HHeJ_G0035918.1 mouse_genomes_project X 162404424 162457389 - MGP_C3HHeJ_P0097593 Car5b protein_coding protein_coding MGP_C3HHeJ_T0097594.1 MGP_C3HHeJ_G0035918.1 mouse_genomes_project X 162441637 162457373 - Car5b protein_coding retained_intron MGP_C3HHeJ_T0015977.1 MGP_C3HHeJ_G0014081.1 mouse_genomes_project X 2736796 2737065 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099754.1 MGP_C3HHeJ_G0037948.1 mouse_genomes_project X 31642635 31642733 - Gm22364 snRNA snRNA MGP_C3HHeJ_T0016500.1 MGP_C3HHeJ_G0014604.1 mouse_genomes_project X 130650737 130651473 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095323.1 MGP_C3HHeJ_G0035278.1 mouse_genomes_project X 15507080 15621945 + MGP_C3HHeJ_P0095323 Jade3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095324.1 MGP_C3HHeJ_G0035278.1 mouse_genomes_project X 15507955 15621939 + MGP_C3HHeJ_P0095324 Jade3 protein_coding protein_coding MGP_C3HHeJ_T0095325.1 MGP_C3HHeJ_G0035278.1 mouse_genomes_project X 15508055 15594877 + Jade3 protein_coding retained_intron MGP_C3HHeJ_T0095326.1 MGP_C3HHeJ_G0035278.1 mouse_genomes_project X 15544645 15619896 + MGP_C3HHeJ_P0095326 Jade3 protein_coding protein_coding MGP_C3HHeJ_T0096387.1 MGP_C3HHeJ_G0035584.1 mouse_genomes_project X 90496568 90568788 - MGP_C3HHeJ_P0096387 Pdk3 protein_coding protein_coding MGP_C3HHeJ_T0096388.1 MGP_C3HHeJ_G0035584.1 mouse_genomes_project X 90497057 90501086 - Pdk3 protein_coding processed_transcript MGP_C3HHeJ_T0096389.1 MGP_C3HHeJ_G0035584.1 mouse_genomes_project X 90513394 90520850 - Pdk3 protein_coding processed_transcript MGP_C3HHeJ_T0095706.1 MGP_C3HHeJ_G0035407.1 mouse_genomes_project X 52273467 52328629 + Ddx26b protein_coding processed_transcript MGP_C3HHeJ_T0095707.1 MGP_C3HHeJ_G0035407.1 mouse_genomes_project X 52273487 52328628 + MGP_C3HHeJ_P0095707 Ddx26b protein_coding protein_coding MGP_C3HHeJ_T0095708.1 MGP_C3HHeJ_G0035407.1 mouse_genomes_project X 52273490 52316111 + MGP_C3HHeJ_P0095708 Ddx26b protein_coding protein_coding MGP_C3HHeJ_T0095709.1 MGP_C3HHeJ_G0035407.1 mouse_genomes_project X 52273495 52328632 + MGP_C3HHeJ_P0095709 Ddx26b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095710.1 MGP_C3HHeJ_G0035407.1 mouse_genomes_project X 52273495 52328629 + MGP_C3HHeJ_P0095710 Ddx26b protein_coding protein_coding MGP_C3HHeJ_T0095711.1 MGP_C3HHeJ_G0035407.1 mouse_genomes_project X 52304225 52328627 + MGP_C3HHeJ_P0095711 Ddx26b protein_coding protein_coding MGP_C3HHeJ_T0095712.1 MGP_C3HHeJ_G0035407.1 mouse_genomes_project X 52325863 52328474 + MGP_C3HHeJ_P0095712 Ddx26b protein_coding protein_coding MGP_C3HHeJ_T0096424.1 MGP_C3HHeJ_G0035592.1 mouse_genomes_project X 91416495 91418986 + MGP_C3HHeJ_P0096424 Gspt2 protein_coding protein_coding MGP_C3HHeJ_T0096425.1 MGP_C3HHeJ_G0035592.1 mouse_genomes_project X 91416502 91423677 + MGP_C3HHeJ_P0096425 Gspt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095012.1 MGP_C3HHeJ_G0035194.1 mouse_genomes_project X 2225741 2242319 + MGP_C3HHeJ_P0095012 Foxp3 protein_coding protein_coding MGP_C3HHeJ_T0095013.1 MGP_C3HHeJ_G0035194.1 mouse_genomes_project X 2225758 2242310 + MGP_C3HHeJ_P0095013 Foxp3 protein_coding protein_coding MGP_C3HHeJ_T0095014.1 MGP_C3HHeJ_G0035194.1 mouse_genomes_project X 2226548 2242310 + MGP_C3HHeJ_P0095014 Foxp3 protein_coding protein_coding MGP_C3HHeJ_T0095015.1 MGP_C3HHeJ_G0035194.1 mouse_genomes_project X 2232297 2242319 + MGP_C3HHeJ_P0095015 Foxp3 protein_coding protein_coding MGP_C3HHeJ_T0009297.1 MGP_C3HHeJ_G0007457.1 mouse_genomes_project X 52124881 52127948 + 1600025M17Rik lincRNA lincRNA MGP_C3HHeJ_T0009298.1 MGP_C3HHeJ_G0007457.1 mouse_genomes_project X 52124939 52126808 + 1600025M17Rik lincRNA lincRNA MGP_C3HHeJ_T0096380.1 MGP_C3HHeJ_G0035582.1 mouse_genomes_project X 90035619 90365721 - MGP_C3HHeJ_P0096380 Pola1 protein_coding protein_coding MGP_C3HHeJ_T0096381.1 MGP_C3HHeJ_G0035582.1 mouse_genomes_project X 90213460 90223918 - Pola1 protein_coding processed_transcript MGP_C3HHeJ_T0096382.1 MGP_C3HHeJ_G0035582.1 mouse_genomes_project X 90356637 90365709 - Pola1 protein_coding retained_intron MGP_C3HHeJ_T0096383.1 MGP_C3HHeJ_G0035582.1 mouse_genomes_project X 90356859 90365681 - Pola1 protein_coding processed_transcript MGP_C3HHeJ_T0016137.1 MGP_C3HHeJ_G0014241.1 mouse_genomes_project X 54513308 54514197 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095569.1 MGP_C3HHeJ_G0035357.1 mouse_genomes_project X 43233708 43313816 - MGP_C3HHeJ_P0095569 Smarca1 protein_coding protein_coding MGP_C3HHeJ_T0095570.1 MGP_C3HHeJ_G0035357.1 mouse_genomes_project X 43233710 43313816 - MGP_C3HHeJ_P0095570 Smarca1 protein_coding protein_coding MGP_C3HHeJ_T0095571.1 MGP_C3HHeJ_G0035357.1 mouse_genomes_project X 43233973 43313849 - MGP_C3HHeJ_P0095571 Smarca1 protein_coding protein_coding MGP_C3HHeJ_T0095572.1 MGP_C3HHeJ_G0035357.1 mouse_genomes_project X 43265190 43313693 - MGP_C3HHeJ_P0095572 Smarca1 protein_coding protein_coding MGP_C3HHeJ_T0095573.1 MGP_C3HHeJ_G0035357.1 mouse_genomes_project X 43291227 43313729 - MGP_C3HHeJ_P0095573 Smarca1 protein_coding protein_coding MGP_C3HHeJ_T0095574.1 MGP_C3HHeJ_G0035357.1 mouse_genomes_project X 43308472 43314238 - MGP_C3HHeJ_P0095574 Smarca1 protein_coding protein_coding MGP_C3HHeJ_T0095575.1 MGP_C3HHeJ_G0035357.1 mouse_genomes_project X 43311126 43314271 - Smarca1 protein_coding processed_transcript MGP_C3HHeJ_T0016615.1 MGP_C3HHeJ_G0014719.1 mouse_genomes_project X 151483302 151484283 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095328.1 MGP_C3HHeJ_G0035280.1 mouse_genomes_project X 15719330 15721626 - MGP_C3HHeJ_P0095328 Ndufb11 protein_coding protein_coding MGP_C3HHeJ_T0101297.1 MGP_C3HHeJ_G0039392.1 mouse_genomes_project X 18522366 18522924 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0005495.1 MGP_C3HHeJ_G0004626.1 mouse_genomes_project X 2732682 2762950 + Gm14820 antisense antisense MGP_C3HHeJ_T0005496.1 MGP_C3HHeJ_G0004626.1 mouse_genomes_project X 2739757 2750534 + Gm14820 antisense antisense MGP_C3HHeJ_T0005497.1 MGP_C3HHeJ_G0004626.1 mouse_genomes_project X 2739833 2763668 + Gm14820 antisense antisense MGP_C3HHeJ_T0005498.1 MGP_C3HHeJ_G0004626.1 mouse_genomes_project X 2739913 2765328 + Gm14820 antisense antisense MGP_C3HHeJ_T0005499.1 MGP_C3HHeJ_G0004626.1 mouse_genomes_project X 2742190 2763665 + Gm14820 antisense antisense MGP_C3HHeJ_T0099781.1 MGP_C3HHeJ_G0037975.1 mouse_genomes_project X 98148553 98148687 + Gm22472 snRNA snRNA MGP_C3HHeJ_T0095650.1 MGP_C3HHeJ_G0035379.1 mouse_genomes_project X 45416124 45417054 - MGP_C3HHeJ_P0095650 Olfr1323 protein_coding protein_coding MGP_C3HHeJ_T0097705.1 MGP_C3HHeJ_G0035950.1 mouse_genomes_project X 168323395 168327953 - MGP_C3HHeJ_P0097705 4933400A11Rik protein_coding protein_coding MGP_C3HHeJ_T0097706.1 MGP_C3HHeJ_G0035950.1 mouse_genomes_project X 168323516 168327996 - MGP_C3HHeJ_P0097706 4933400A11Rik protein_coding protein_coding MGP_C3HHeJ_T0097707.1 MGP_C3HHeJ_G0035950.1 mouse_genomes_project X 168323563 168327918 - MGP_C3HHeJ_P0097707 4933400A11Rik protein_coding protein_coding MGP_C3HHeJ_T0016249.1 MGP_C3HHeJ_G0014353.1 mouse_genomes_project X 77566570 77567300 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016396.1 MGP_C3HHeJ_G0014500.1 mouse_genomes_project X 103913742 103914249 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095995.1 MGP_C3HHeJ_G0035496.1 mouse_genomes_project X 70148046 70150373 + MGP_C3HHeJ_P0095995 Avpr2 protein_coding protein_coding MGP_C3HHeJ_T0095996.1 MGP_C3HHeJ_G0035496.1 mouse_genomes_project X 70148047 70149366 + Avpr2 protein_coding processed_transcript MGP_C3HHeJ_T0095997.1 MGP_C3HHeJ_G0035496.1 mouse_genomes_project X 70148054 70151447 + MGP_C3HHeJ_P0095997 Avpr2 protein_coding protein_coding MGP_C3HHeJ_T0095998.1 MGP_C3HHeJ_G0035496.1 mouse_genomes_project X 70148058 70150142 + MGP_C3HHeJ_P0095998 Avpr2 protein_coding protein_coding MGP_C3HHeJ_T0098228.1 MGP_C3HHeJ_G0036440.1 mouse_genomes_project X 133646274 133646393 + n-R5s12 rRNA rRNA MGP_C3HHeJ_T0018441.1 MGP_C3HHeJ_G0015549.1 mouse_genomes_project X 132310800 132325536 - 3632454L22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018442.1 MGP_C3HHeJ_G0015549.1 mouse_genomes_project X 132311599 132336936 - 3632454L22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018443.1 MGP_C3HHeJ_G0015549.1 mouse_genomes_project X 132315975 132325990 - 3632454L22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016389.1 MGP_C3HHeJ_G0014493.1 mouse_genomes_project X 102904257 102904449 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097335.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149764354 149765852 + Huwe1 protein_coding processed_transcript MGP_C3HHeJ_T0097336.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149764471 149768100 + Huwe1 protein_coding processed_transcript MGP_C3HHeJ_T0097337.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149764902 149770449 + Huwe1 protein_coding processed_transcript MGP_C3HHeJ_T0097338.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149766831 149837638 + MGP_C3HHeJ_P0097338 Huwe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097339.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149766849 149770449 + Huwe1 protein_coding processed_transcript MGP_C3HHeJ_T0097340.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149766915 149817891 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097341.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149766915 149900018 + MGP_C3HHeJ_P0097341 Huwe1 protein_coding protein_coding MGP_C3HHeJ_T0097342.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149766925 149900020 + MGP_C3HHeJ_P0097342 Huwe1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0097343.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149766935 149825229 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097344.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149766935 149838153 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097345.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149767246 149799966 + MGP_C3HHeJ_P0097345 Huwe1 protein_coding protein_coding MGP_C3HHeJ_T0097346.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149767250 149812279 + Huwe1 protein_coding processed_transcript MGP_C3HHeJ_T0097347.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149767250 149836823 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097348.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149767250 149804798 + MGP_C3HHeJ_P0097348 Huwe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097349.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149799937 149900018 + MGP_C3HHeJ_P0097349 Huwe1 protein_coding protein_coding MGP_C3HHeJ_T0097350.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149824849 149855756 + MGP_C3HHeJ_P0097350 Huwe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097351.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149829177 149838507 + MGP_C3HHeJ_P0097351 Huwe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097352.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149847190 149847905 + Huwe1 protein_coding processed_transcript MGP_C3HHeJ_T0097353.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149869529 149874453 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097354.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149873380 149874925 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097355.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149873380 149874728 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097356.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149885809 149887140 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097357.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149885870 149888261 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097358.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149888785 149892360 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097106.1 MGP_C3HHeJ_G0035802.1 mouse_genomes_project X 137219836 137295835 + MGP_C3HHeJ_P0097106 Tbc1d8b protein_coding protein_coding MGP_C3HHeJ_T0097108.1 MGP_C3HHeJ_G0035802.1 mouse_genomes_project X 137278591 137287663 + Tbc1d8b protein_coding processed_transcript MGP_C3HHeJ_T0016284.1 MGP_C3HHeJ_G0014388.1 mouse_genomes_project X 86298169 86301595 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016690.1 MGP_C3HHeJ_G0014794.1 mouse_genomes_project X 166498334 166499054 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097040.1 MGP_C3HHeJ_G0035779.1 mouse_genomes_project X 133807861 133942767 + MGP_C3HHeJ_P0097040 Kir3dl1 protein_coding protein_coding MGP_C3HHeJ_T0098306.1 MGP_C3HHeJ_G0036518.1 mouse_genomes_project X 112548130 112548511 + Gm27414 scaRNA scaRNA MGP_C3HHeJ_T0096304.1 MGP_C3HHeJ_G0035554.1 mouse_genomes_project X 74505917 74511405 + MGP_C3HHeJ_P0096304 protein_coding protein_coding MGP_C3HHeJ_T0016101.1 MGP_C3HHeJ_G0014205.1 mouse_genomes_project X 44623784 44624184 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016240.1 MGP_C3HHeJ_G0014344.1 mouse_genomes_project X 75152886 75155993 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016085.1 MGP_C3HHeJ_G0014189.1 mouse_genomes_project X 39844983 39845378 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016688.1 MGP_C3HHeJ_G0014792.1 mouse_genomes_project X 165921253 165921796 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101050.1 MGP_C3HHeJ_G0039244.1 mouse_genomes_project X 129706217 129706341 + Gm26406 snoRNA snoRNA MGP_C3HHeJ_T0009335.1 MGP_C3HHeJ_G0007479.1 mouse_genomes_project X 110156444 110196875 - Gm14936 lincRNA lincRNA MGP_C3HHeJ_T0095396.1 MGP_C3HHeJ_G0035297.1 mouse_genomes_project X 16855847 16883815 + MGP_C3HHeJ_P0095396 Slc6a14 protein_coding protein_coding MGP_C3HHeJ_T0011111.1 MGP_C3HHeJ_G0009244.1 mouse_genomes_project X 103696154 103696264 + Gm27428 miRNA miRNA MGP_C3HHeJ_T0095201.1 MGP_C3HHeJ_G0035235.1 mouse_genomes_project X 3578540 3586007 + MGP_C3HHeJ_P0095201 protein_coding protein_coding MGP_C3HHeJ_T0009303.1 MGP_C3HHeJ_G0007461.1 mouse_genomes_project X 64682524 64693402 - Fmr1os lincRNA lincRNA MGP_C3HHeJ_T0016023.1 MGP_C3HHeJ_G0014127.1 mouse_genomes_project X 13374273 13374430 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016147.1 MGP_C3HHeJ_G0014251.1 mouse_genomes_project X 56650351 56652218 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097226.1 MGP_C3HHeJ_G0035835.1 mouse_genomes_project X 142033318 142366487 - MGP_C3HHeJ_P0097226 Trpc5 protein_coding protein_coding MGP_C3HHeJ_T0097227.1 MGP_C3HHeJ_G0035835.1 mouse_genomes_project X 142070763 142366310 - Trpc5 protein_coding retained_intron MGP_C3HHeJ_T0016386.1 MGP_C3HHeJ_G0014490.1 mouse_genomes_project X 102533914 102534651 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097081.1 MGP_C3HHeJ_G0035794.1 mouse_genomes_project X 136419453 136517236 + MGP_C3HHeJ_P0097081 Nrk protein_coding protein_coding MGP_C3HHeJ_T0097082.1 MGP_C3HHeJ_G0035794.1 mouse_genomes_project X 136419454 136472468 + Nrk protein_coding processed_transcript MGP_C3HHeJ_T0097083.1 MGP_C3HHeJ_G0035794.1 mouse_genomes_project X 136419454 136518676 + MGP_C3HHeJ_P0097083 Nrk protein_coding protein_coding MGP_C3HHeJ_T0097084.1 MGP_C3HHeJ_G0035794.1 mouse_genomes_project X 136419454 136517948 + MGP_C3HHeJ_P0097084 Nrk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097085.1 MGP_C3HHeJ_G0035794.1 mouse_genomes_project X 136490839 136497900 + Nrk protein_coding retained_intron MGP_C3HHeJ_T0016012.1 MGP_C3HHeJ_G0014116.1 mouse_genomes_project X 10403626 10403938 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101530.1 MGP_C3HHeJ_G0039501.1 mouse_genomes_project X 100265480 100342931 - unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101531.1 MGP_C3HHeJ_G0039501.1 mouse_genomes_project X 100315413 100342931 - unitary_pseudogene unitary_pseudogene MGP_C3HHeJ_T0101532.1 MGP_C3HHeJ_G0039501.1 mouse_genomes_project X 100315413 100412434 - unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101533.1 MGP_C3HHeJ_G0039501.1 mouse_genomes_project X 100315479 100339265 - unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101534.1 MGP_C3HHeJ_G0039501.1 mouse_genomes_project X 100316767 100342923 - unitary_pseudogene retained_intron MGP_C3HHeJ_T0101535.1 MGP_C3HHeJ_G0039501.1 mouse_genomes_project X 100318318 100376983 - unitary_pseudogene processed_transcript MGP_C3HHeJ_T0097090.1 MGP_C3HHeJ_G0035797.1 mouse_genomes_project X 136681473 136683255 + MGP_C3HHeJ_P0097090 4933428M09Rik protein_coding protein_coding MGP_C3HHeJ_T0016332.1 MGP_C3HHeJ_G0014436.1 mouse_genomes_project X 94032408 94033684 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095387.1 MGP_C3HHeJ_G0035293.1 mouse_genomes_project X 16199629 16209685 - MGP_C3HHeJ_P0095387 Zfp300 protein_coding protein_coding MGP_C3HHeJ_T0095388.1 MGP_C3HHeJ_G0035293.1 mouse_genomes_project X 16202041 16209704 - MGP_C3HHeJ_P0095388 Zfp300 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095389.1 MGP_C3HHeJ_G0035293.1 mouse_genomes_project X 16204397 16209442 - Zfp300 protein_coding retained_intron MGP_C3HHeJ_T0095390.1 MGP_C3HHeJ_G0035293.1 mouse_genomes_project X 16204705 16209983 - Zfp300 protein_coding processed_transcript MGP_C3HHeJ_T0097186.1 MGP_C3HHeJ_G0035828.1 mouse_genomes_project X 140478971 140593086 - MGP_C3HHeJ_P0097186 Ammecr1 protein_coding protein_coding MGP_C3HHeJ_T0095466.1 MGP_C3HHeJ_G0035326.1 mouse_genomes_project X 33043919 33047954 + MGP_C3HHeJ_P0095466 Rhox5 protein_coding protein_coding MGP_C3HHeJ_T0095467.1 MGP_C3HHeJ_G0035326.1 mouse_genomes_project X 33043928 33047842 + MGP_C3HHeJ_P0095467 Rhox5 protein_coding protein_coding MGP_C3HHeJ_T0016576.1 MGP_C3HHeJ_G0014680.1 mouse_genomes_project X 141967166 141967496 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096888.1 MGP_C3HHeJ_G0035731.1 mouse_genomes_project X 126884092 127325276 + Diaph2 protein_coding retained_intron MGP_C3HHeJ_T0096889.1 MGP_C3HHeJ_G0035731.1 mouse_genomes_project X 126884092 127615217 + MGP_C3HHeJ_P0096889 Diaph2 protein_coding protein_coding MGP_C3HHeJ_T0096890.1 MGP_C3HHeJ_G0035731.1 mouse_genomes_project X 126884146 127477513 + Diaph2 protein_coding retained_intron MGP_C3HHeJ_T0096891.1 MGP_C3HHeJ_G0035731.1 mouse_genomes_project X 126884155 127610542 + MGP_C3HHeJ_P0096891 Diaph2 protein_coding protein_coding MGP_C3HHeJ_T0096892.1 MGP_C3HHeJ_G0035731.1 mouse_genomes_project X 126884174 127477186 + Diaph2 protein_coding retained_intron MGP_C3HHeJ_T0096893.1 MGP_C3HHeJ_G0035731.1 mouse_genomes_project X 126884261 127615220 + MGP_C3HHeJ_P0096893 Diaph2 protein_coding protein_coding MGP_C3HHeJ_T0096894.1 MGP_C3HHeJ_G0035731.1 mouse_genomes_project X 127107826 127171732 + Diaph2 protein_coding processed_transcript MGP_C3HHeJ_T0016335.1 MGP_C3HHeJ_G0014439.1 mouse_genomes_project X 95342662 95343150 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095796.1 MGP_C3HHeJ_G0035436.1 mouse_genomes_project X 60288038 60288834 - MGP_C3HHeJ_P0095796 Gm6760 protein_coding protein_coding MGP_C3HHeJ_T0095272.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8483999 8762398 - MGP_C3HHeJ_P0095272 Cask protein_coding unknown_likely_coding MGP_C3HHeJ_T0095273.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8484003 8814951 - MGP_C3HHeJ_P0095273 Cask protein_coding protein_coding MGP_C3HHeJ_T0095274.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8484003 8814988 - MGP_C3HHeJ_P0095274 Cask protein_coding protein_coding MGP_C3HHeJ_T0095275.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8484003 8752282 - MGP_C3HHeJ_P0095275 Cask protein_coding protein_coding MGP_C3HHeJ_T0095276.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8488347 8814966 - MGP_C3HHeJ_P0095276 Cask protein_coding protein_coding MGP_C3HHeJ_T0095277.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8488798 8493786 - MGP_C3HHeJ_P0095277 Cask protein_coding protein_coding MGP_C3HHeJ_T0095278.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8489096 8504676 - MGP_C3HHeJ_P0095278 Cask protein_coding protein_coding MGP_C3HHeJ_T0095279.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8500346 8525872 - MGP_C3HHeJ_P0095279 Cask protein_coding protein_coding MGP_C3HHeJ_T0095280.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8521108 8814988 - Cask protein_coding retained_intron MGP_C3HHeJ_T0095281.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8537644 8641346 - MGP_C3HHeJ_P0095281 Cask protein_coding protein_coding MGP_C3HHeJ_T0095282.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8594586 8814498 - MGP_C3HHeJ_P0095282 Cask protein_coding protein_coding MGP_C3HHeJ_T0095286.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8681053 8819777 - Cask protein_coding processed_transcript MGP_C3HHeJ_T0095287.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8814499 8815145 - Cask protein_coding processed_transcript MGP_C3HHeJ_T0016262.1 MGP_C3HHeJ_G0014366.1 mouse_genomes_project X 82173878 82174307 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096162.1 MGP_C3HHeJ_G0035512.1 mouse_genomes_project X 70587325 70595286 + MGP_C3HHeJ_P0096162 Fam50a protein_coding protein_coding MGP_C3HHeJ_T0096163.1 MGP_C3HHeJ_G0035512.1 mouse_genomes_project X 70587418 70595271 + Fam50a protein_coding retained_intron MGP_C3HHeJ_T0096164.1 MGP_C3HHeJ_G0035512.1 mouse_genomes_project X 70591532 70592030 + Fam50a protein_coding retained_intron MGP_C3HHeJ_T0097113.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137369318 137420396 - MGP_C3HHeJ_P0097113 Morc4 protein_coding protein_coding MGP_C3HHeJ_T0097114.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137369590 137420419 - MGP_C3HHeJ_P0097114 Morc4 protein_coding protein_coding MGP_C3HHeJ_T0097115.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137370361 137406633 - MGP_C3HHeJ_P0097115 Morc4 protein_coding protein_coding MGP_C3HHeJ_T0097116.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137371917 137383790 - Morc4 protein_coding retained_intron MGP_C3HHeJ_T0097117.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137384165 137403690 - MGP_C3HHeJ_P0097117 Morc4 protein_coding protein_coding MGP_C3HHeJ_T0097118.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137405090 137420367 - Morc4 protein_coding retained_intron MGP_C3HHeJ_T0097119.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137405097 137420364 - Morc4 protein_coding processed_transcript MGP_C3HHeJ_T0097120.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137407504 137420152 - Morc4 protein_coding retained_intron MGP_C3HHeJ_T0097121.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137407538 137420115 - MGP_C3HHeJ_P0097121 Morc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097122.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137407652 137419941 - MGP_C3HHeJ_P0097122 Morc4 protein_coding protein_coding MGP_C3HHeJ_T0102353.1 MGP_C3HHeJ_G0040316.1 mouse_genomes_project X 74190219 74194709 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016559.1 MGP_C3HHeJ_G0014663.1 mouse_genomes_project X 139481261 139481517 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018444.1 MGP_C3HHeJ_G0015550.1 mouse_genomes_project X 133454907 133465721 + 5730412P04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0095293.1 MGP_C3HHeJ_G0035267.1 mouse_genomes_project X 11699954 11811184 - MGP_C3HHeJ_P0095293 Maob protein_coding protein_coding MGP_C3HHeJ_T0095294.1 MGP_C3HHeJ_G0035267.1 mouse_genomes_project X 11700711 11811093 - MGP_C3HHeJ_P0095294 Maob protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095295.1 MGP_C3HHeJ_G0035267.1 mouse_genomes_project X 11714258 11811093 - MGP_C3HHeJ_P0095295 Maob protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095296.1 MGP_C3HHeJ_G0035267.1 mouse_genomes_project X 11736342 11811138 - MGP_C3HHeJ_P0095296 Maob protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096188.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70664418 70672974 - MGP_C3HHeJ_P0096188 Fam3a protein_coding protein_coding MGP_C3HHeJ_T0096189.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70664460 70672805 - MGP_C3HHeJ_P0096189 Fam3a protein_coding protein_coding MGP_C3HHeJ_T0096190.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70664460 70672705 - MGP_C3HHeJ_P0096190 Fam3a protein_coding protein_coding MGP_C3HHeJ_T0096191.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70664903 70672884 - MGP_C3HHeJ_P0096191 Fam3a protein_coding protein_coding MGP_C3HHeJ_T0096192.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70665001 70672805 - MGP_C3HHeJ_P0096192 Fam3a protein_coding protein_coding MGP_C3HHeJ_T0096193.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70666121 70672957 - MGP_C3HHeJ_P0096193 Fam3a protein_coding protein_coding MGP_C3HHeJ_T0096194.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70666331 70672805 - MGP_C3HHeJ_P0096194 Fam3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096195.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70666555 70667455 - Fam3a protein_coding retained_intron MGP_C3HHeJ_T0096196.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70666611 70672389 - MGP_C3HHeJ_P0096196 Fam3a protein_coding protein_coding MGP_C3HHeJ_T0096197.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70666611 70672452 - MGP_C3HHeJ_P0096197 Fam3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011060.1 MGP_C3HHeJ_G0009193.1 mouse_genomes_project X 48548667 48548762 - Mir322 miRNA miRNA MGP_C3HHeJ_T0016055.1 MGP_C3HHeJ_G0014159.1 mouse_genomes_project X 32287427 32290124 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016351.1 MGP_C3HHeJ_G0014455.1 mouse_genomes_project X 99139589 99140063 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095375.1 MGP_C3HHeJ_G0035290.1 mouse_genomes_project X 16062258 16082528 - Uxt protein_coding processed_transcript MGP_C3HHeJ_T0095376.1 MGP_C3HHeJ_G0035290.1 mouse_genomes_project X 16072198 16082554 - MGP_C3HHeJ_P0095376 Uxt protein_coding protein_coding MGP_C3HHeJ_T0095377.1 MGP_C3HHeJ_G0035290.1 mouse_genomes_project X 16072459 16082452 - Uxt protein_coding retained_intron MGP_C3HHeJ_T0095378.1 MGP_C3HHeJ_G0035290.1 mouse_genomes_project X 16072465 16082537 - Uxt protein_coding processed_transcript MGP_C3HHeJ_T0095379.1 MGP_C3HHeJ_G0035290.1 mouse_genomes_project X 16079598 16082523 - Uxt protein_coding retained_intron MGP_C3HHeJ_T0095380.1 MGP_C3HHeJ_G0035290.1 mouse_genomes_project X 16081953 16082511 - Uxt protein_coding processed_transcript MGP_C3HHeJ_T0016034.1 MGP_C3HHeJ_G0014138.1 mouse_genomes_project X 15543608 15543804 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099766.1 MGP_C3HHeJ_G0037960.1 mouse_genomes_project X 55087573 55087667 + Gm26487 snRNA snRNA MGP_C3HHeJ_T0096447.1 MGP_C3HHeJ_G0035598.1 mouse_genomes_project X 92575198 92770323 + Zc3h12b protein_coding processed_transcript MGP_C3HHeJ_T0096448.1 MGP_C3HHeJ_G0035598.1 mouse_genomes_project X 92742273 92773535 + MGP_C3HHeJ_P0096448 Zc3h12b protein_coding protein_coding MGP_C3HHeJ_T0096449.1 MGP_C3HHeJ_G0035598.1 mouse_genomes_project X 92743084 92778202 + MGP_C3HHeJ_P0096449 Zc3h12b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096957.1 MGP_C3HHeJ_G0035748.1 mouse_genomes_project X 131852635 131865594 - MGP_C3HHeJ_P0096957 Gla protein_coding protein_coding MGP_C3HHeJ_T0096958.1 MGP_C3HHeJ_G0035748.1 mouse_genomes_project X 131859758 131864761 - MGP_C3HHeJ_P0096958 Gla protein_coding protein_coding MGP_C3HHeJ_T0016449.1 MGP_C3HHeJ_G0014553.1 mouse_genomes_project X 114558965 114560058 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095127.1 MGP_C3HHeJ_G0035216.1 mouse_genomes_project X 2599642 2604082 - MGP_C3HHeJ_P0095127 Eras protein_coding protein_coding MGP_C3HHeJ_T0096992.1 MGP_C3HHeJ_G0035759.1 mouse_genomes_project X 132495062 133559882 - MGP_C3HHeJ_P0096992 Tceal5 protein_coding protein_coding MGP_C3HHeJ_T0096993.1 MGP_C3HHeJ_G0035759.1 mouse_genomes_project X 132495094 133559977 - MGP_C3HHeJ_P0096993 Tceal5 protein_coding protein_coding MGP_C3HHeJ_T0097032.1 MGP_C3HHeJ_G0035759.1 mouse_genomes_project X 133555287 133560121 - MGP_C3HHeJ_P0097032 Tceal5 protein_coding protein_coding MGP_C3HHeJ_T0016599.1 MGP_C3HHeJ_G0014703.1 mouse_genomes_project X 148396291 148398722 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002446.1 MGP_C3HHeJ_G0002364.1 mouse_genomes_project X 132022527 132023953 - TEC TEC MGP_C3HHeJ_T0097091.1 MGP_C3HHeJ_G0035798.1 mouse_genomes_project X 136712577 136737642 + MGP_C3HHeJ_P0097091 Mum1l1 protein_coding protein_coding MGP_C3HHeJ_T0097092.1 MGP_C3HHeJ_G0035798.1 mouse_genomes_project X 136712577 136741000 + MGP_C3HHeJ_P0097092 Mum1l1 protein_coding protein_coding MGP_C3HHeJ_T0097093.1 MGP_C3HHeJ_G0035798.1 mouse_genomes_project X 136712579 136741002 + MGP_C3HHeJ_P0097093 Mum1l1 protein_coding protein_coding MGP_C3HHeJ_T0097094.1 MGP_C3HHeJ_G0035798.1 mouse_genomes_project X 136712643 136715821 + Mum1l1 protein_coding retained_intron MGP_C3HHeJ_T0097095.1 MGP_C3HHeJ_G0035798.1 mouse_genomes_project X 136719702 136741002 + MGP_C3HHeJ_P0097095 Mum1l1 protein_coding protein_coding MGP_C3HHeJ_T0097096.1 MGP_C3HHeJ_G0035798.1 mouse_genomes_project X 136719702 136741002 + MGP_C3HHeJ_P0097096 Mum1l1 protein_coding protein_coding MGP_C3HHeJ_T0097097.1 MGP_C3HHeJ_G0035798.1 mouse_genomes_project X 136719702 136737469 + MGP_C3HHeJ_P0097097 Mum1l1 protein_coding protein_coding MGP_C3HHeJ_T0097098.1 MGP_C3HHeJ_G0035798.1 mouse_genomes_project X 136719702 136737708 + MGP_C3HHeJ_P0097098 Mum1l1 protein_coding protein_coding MGP_C3HHeJ_T0011106.1 MGP_C3HHeJ_G0009239.1 mouse_genomes_project X 100690795 100690844 + Mir374c miRNA miRNA MGP_C3HHeJ_T0016110.1 MGP_C3HHeJ_G0014214.1 mouse_genomes_project X 46653503 46653901 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096403.1 MGP_C3HHeJ_G0035588.1 mouse_genomes_project X 91000103 91003664 + Klhl15 protein_coding processed_transcript MGP_C3HHeJ_T0096404.1 MGP_C3HHeJ_G0035588.1 mouse_genomes_project X 91000108 91018506 + MGP_C3HHeJ_P0096404 Klhl15 protein_coding protein_coding MGP_C3HHeJ_T0096405.1 MGP_C3HHeJ_G0035588.1 mouse_genomes_project X 91000431 91019829 + MGP_C3HHeJ_P0096405 Klhl15 protein_coding protein_coding MGP_C3HHeJ_T0096406.1 MGP_C3HHeJ_G0035588.1 mouse_genomes_project X 91000434 91039384 + MGP_C3HHeJ_P0096406 Klhl15 protein_coding protein_coding MGP_C3HHeJ_T0096407.1 MGP_C3HHeJ_G0035588.1 mouse_genomes_project X 91000491 91021734 + MGP_C3HHeJ_P0096407 Klhl15 protein_coding protein_coding MGP_C3HHeJ_T0096408.1 MGP_C3HHeJ_G0035588.1 mouse_genomes_project X 91000494 91038613 + Klhl15 protein_coding retained_intron MGP_C3HHeJ_T0096409.1 MGP_C3HHeJ_G0035588.1 mouse_genomes_project X 91000494 91019833 + MGP_C3HHeJ_P0096409 Klhl15 protein_coding protein_coding MGP_C3HHeJ_T0096410.1 MGP_C3HHeJ_G0035588.1 mouse_genomes_project X 91000815 91039378 + MGP_C3HHeJ_P0096410 Klhl15 protein_coding protein_coding MGP_C3HHeJ_T0096411.1 MGP_C3HHeJ_G0035588.1 mouse_genomes_project X 91001317 91043588 + MGP_C3HHeJ_P0096411 Klhl15 protein_coding protein_coding MGP_C3HHeJ_T0016205.1 MGP_C3HHeJ_G0014309.1 mouse_genomes_project X 70772434 70773267 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095565.1 MGP_C3HHeJ_G0035354.1 mouse_genomes_project X 40170367 40173995 - MGP_C3HHeJ_P0095565 Dcaf12l1 protein_coding protein_coding MGP_C3HHeJ_T0095566.1 MGP_C3HHeJ_G0035354.1 mouse_genomes_project X 40170367 40173959 - MGP_C3HHeJ_P0095566 Dcaf12l1 protein_coding protein_coding MGP_C3HHeJ_T0096853.1 MGP_C3HHeJ_G0035714.1 mouse_genomes_project X 110468058 111019462 + MGP_C3HHeJ_P0096853 Dach2 protein_coding protein_coding MGP_C3HHeJ_T0096854.1 MGP_C3HHeJ_G0035714.1 mouse_genomes_project X 110468070 111015003 + MGP_C3HHeJ_P0096854 Dach2 protein_coding protein_coding MGP_C3HHeJ_T0096855.1 MGP_C3HHeJ_G0035714.1 mouse_genomes_project X 110468124 111018660 + MGP_C3HHeJ_P0096855 Dach2 protein_coding protein_coding MGP_C3HHeJ_T0096856.1 MGP_C3HHeJ_G0035714.1 mouse_genomes_project X 110468800 110928714 + Dach2 protein_coding retained_intron MGP_C3HHeJ_T0096857.1 MGP_C3HHeJ_G0035714.1 mouse_genomes_project X 110468805 111018969 + MGP_C3HHeJ_P0096857 Dach2 protein_coding protein_coding MGP_C3HHeJ_T0096858.1 MGP_C3HHeJ_G0035714.1 mouse_genomes_project X 110468805 111017342 + MGP_C3HHeJ_P0096858 Dach2 protein_coding protein_coding MGP_C3HHeJ_T0096859.1 MGP_C3HHeJ_G0035714.1 mouse_genomes_project X 110469186 110719672 + Dach2 protein_coding processed_transcript MGP_C3HHeJ_T0096860.1 MGP_C3HHeJ_G0035714.1 mouse_genomes_project X 110893578 111017342 + Dach2 protein_coding processed_transcript MGP_C3HHeJ_T0095202.1 MGP_C3HHeJ_G0035236.1 mouse_genomes_project X 3722701 3725284 + MGP_C3HHeJ_P0095202 B630019K06Rik protein_coding protein_coding MGP_C3HHeJ_T0095834.1 MGP_C3HHeJ_G0035452.1 mouse_genomes_project X 66537564 66554924 - MGP_C3HHeJ_P0095834 Tmem185a protein_coding protein_coding MGP_C3HHeJ_T0095835.1 MGP_C3HHeJ_G0035452.1 mouse_genomes_project X 66538770 66554924 - MGP_C3HHeJ_P0095835 Tmem185a protein_coding protein_coding MGP_C3HHeJ_T0095836.1 MGP_C3HHeJ_G0035452.1 mouse_genomes_project X 66538865 66547923 - Tmem185a protein_coding processed_transcript MGP_C3HHeJ_T0095837.1 MGP_C3HHeJ_G0035452.1 mouse_genomes_project X 66540734 66554886 - Tmem185a protein_coding processed_transcript MGP_C3HHeJ_T0101043.1 MGP_C3HHeJ_G0039237.1 mouse_genomes_project X 113927737 113927852 + Gm24438 snoRNA snoRNA MGP_C3HHeJ_T0016652.1 MGP_C3HHeJ_G0014756.1 mouse_genomes_project X 157696868 157697132 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016680.1 MGP_C3HHeJ_G0014784.1 mouse_genomes_project X 164125170 164125549 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016204.1 MGP_C3HHeJ_G0014308.1 mouse_genomes_project X 70552204 70552420 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016315.1 MGP_C3HHeJ_G0014419.1 mouse_genomes_project X 91391754 91392080 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096770.1 MGP_C3HHeJ_G0035685.1 mouse_genomes_project X 104108360 104111923 - MGP_C3HHeJ_P0096770 Zcchc5 protein_coding protein_coding MGP_C3HHeJ_T0096971.1 MGP_C3HHeJ_G0035752.1 mouse_genomes_project X 132026019 132028880 - MGP_C3HHeJ_P0096971 Armcx6 protein_coding protein_coding MGP_C3HHeJ_T0096972.1 MGP_C3HHeJ_G0035752.1 mouse_genomes_project X 132026021 132028966 - MGP_C3HHeJ_P0096972 Armcx6 protein_coding protein_coding MGP_C3HHeJ_T0096973.1 MGP_C3HHeJ_G0035752.1 mouse_genomes_project X 132027518 132028896 - Armcx6 protein_coding processed_transcript MGP_C3HHeJ_T0096974.1 MGP_C3HHeJ_G0035752.1 mouse_genomes_project X 132027698 132028910 - Armcx6 protein_coding processed_transcript MGP_C3HHeJ_T0016547.1 MGP_C3HHeJ_G0014651.1 mouse_genomes_project X 138375253 138377792 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016650.1 MGP_C3HHeJ_G0014754.1 mouse_genomes_project X 157373374 157374120 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016343.1 MGP_C3HHeJ_G0014447.1 mouse_genomes_project X 97221838 97222993 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095195.1 MGP_C3HHeJ_G0035229.1 mouse_genomes_project X 3044489 3076330 + MGP_C3HHeJ_P0095195 protein_coding protein_coding MGP_C3HHeJ_T0016467.1 MGP_C3HHeJ_G0014571.1 mouse_genomes_project X 118139979 118141156 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002443.1 MGP_C3HHeJ_G0002361.1 mouse_genomes_project X 100909382 100911394 - TEC TEC MGP_C3HHeJ_T0011680.1 MGP_C3HHeJ_G0009813.1 mouse_genomes_project X 130620123 130620459 - Gm22552 misc_RNA misc_RNA MGP_C3HHeJ_T0096809.1 MGP_C3HHeJ_G0035698.1 mouse_genomes_project X 106390104 106459054 + MGP_C3HHeJ_P0096809 Sh3bgrl protein_coding protein_coding MGP_C3HHeJ_T0096810.1 MGP_C3HHeJ_G0035698.1 mouse_genomes_project X 106390248 106500645 + Sh3bgrl protein_coding processed_transcript MGP_C3HHeJ_T0096811.1 MGP_C3HHeJ_G0035698.1 mouse_genomes_project X 106410574 106450942 + Sh3bgrl protein_coding processed_transcript MGP_C3HHeJ_T0009304.1 MGP_C3HHeJ_G0007462.1 mouse_genomes_project X 69172971 69173493 + Gm14684 lincRNA lincRNA MGP_C3HHeJ_T0097506.1 MGP_C3HHeJ_G0035897.1 mouse_genomes_project X 158309964 158446845 + MGP_C3HHeJ_P0097506 Map3k15 protein_coding protein_coding MGP_C3HHeJ_T0101027.1 MGP_C3HHeJ_G0039221.1 mouse_genomes_project X 70001467 70001590 + Gm25226 snoRNA snoRNA MGP_C3HHeJ_T0097160.1 MGP_C3HHeJ_G0035818.1 mouse_genomes_project X 138746154 139074967 - MGP_C3HHeJ_P0097160 Col4a6 protein_coding protein_coding MGP_C3HHeJ_T0097161.1 MGP_C3HHeJ_G0035818.1 mouse_genomes_project X 138770475 138791880 - Col4a6 protein_coding processed_transcript MGP_C3HHeJ_T0097162.1 MGP_C3HHeJ_G0035818.1 mouse_genomes_project X 138774029 138776914 - Col4a6 protein_coding retained_intron MGP_C3HHeJ_T0016208.1 MGP_C3HHeJ_G0014312.1 mouse_genomes_project X 70796887 70797472 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101044.1 MGP_C3HHeJ_G0039238.1 mouse_genomes_project X 116617857 116617973 - Gm26182 snoRNA snoRNA MGP_C3HHeJ_T0016127.1 MGP_C3HHeJ_G0014231.1 mouse_genomes_project X 51864336 51865059 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095474.1 MGP_C3HHeJ_G0035332.1 mouse_genomes_project X 33368788 33377336 - MGP_C3HHeJ_P0095474 Rhox11 protein_coding protein_coding MGP_C3HHeJ_T0018404.1 MGP_C3HHeJ_G0015539.1 mouse_genomes_project X 57065751 57134221 + C230004F18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018405.1 MGP_C3HHeJ_G0015539.1 mouse_genomes_project X 57065751 57089341 + C230004F18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018406.1 MGP_C3HHeJ_G0015539.1 mouse_genomes_project X 57065751 57084677 + C230004F18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018407.1 MGP_C3HHeJ_G0015539.1 mouse_genomes_project X 57065751 57070534 + C230004F18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018408.1 MGP_C3HHeJ_G0015539.1 mouse_genomes_project X 57065763 57134221 + C230004F18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0097262.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148448711 148515952 - MGP_C3HHeJ_P0097262 Apex2 protein_coding protein_coding MGP_C3HHeJ_T0097263.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148449544 148514190 - MGP_C3HHeJ_P0097263 Apex2 protein_coding protein_coding MGP_C3HHeJ_T0097268.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148493870 148515952 - MGP_C3HHeJ_P0097268 Apex2 protein_coding protein_coding MGP_C3HHeJ_T0097269.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148496515 148514193 - Apex2 protein_coding retained_intron MGP_C3HHeJ_T0097270.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148496516 148515976 - Apex2 protein_coding processed_transcript MGP_C3HHeJ_T0097271.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148496516 148514257 - MGP_C3HHeJ_P0097271 Apex2 protein_coding protein_coding MGP_C3HHeJ_T0097272.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148496516 148514204 - MGP_C3HHeJ_P0097272 Apex2 protein_coding protein_coding MGP_C3HHeJ_T0097273.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148497467 148512556 - Apex2 protein_coding processed_transcript MGP_C3HHeJ_T0097274.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148497557 148514179 - MGP_C3HHeJ_P0097274 Apex2 protein_coding protein_coding MGP_C3HHeJ_T0097275.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148510498 148514189 - MGP_C3HHeJ_P0097275 Apex2 protein_coding protein_coding MGP_C3HHeJ_T0016166.1 MGP_C3HHeJ_G0014270.1 mouse_genomes_project X 59417022 59417324 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102376.1 MGP_C3HHeJ_G0040339.1 mouse_genomes_project X 152455993 152459626 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016151.1 MGP_C3HHeJ_G0014255.1 mouse_genomes_project X 57040712 57041865 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095918.1 MGP_C3HHeJ_G0035480.1 mouse_genomes_project X 69661527 69663167 - MGP_C3HHeJ_P0095918 Trex2 protein_coding protein_coding MGP_C3HHeJ_T0016625.1 MGP_C3HHeJ_G0014729.1 mouse_genomes_project X 153369889 153372683 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016482.1 MGP_C3HHeJ_G0014586.1 mouse_genomes_project X 125441394 125442058 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016329.1 MGP_C3HHeJ_G0014433.1 mouse_genomes_project X 93788091 93788626 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016368.1 MGP_C3HHeJ_G0014472.1 mouse_genomes_project X 100643309 100643534 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005500.1 MGP_C3HHeJ_G0004627.1 mouse_genomes_project X 2849005 2851541 + Rbm3os antisense antisense MGP_C3HHeJ_T0005501.1 MGP_C3HHeJ_G0004627.1 mouse_genomes_project X 2849493 2851253 + Rbm3os antisense antisense MGP_C3HHeJ_T0011038.1 MGP_C3HHeJ_G0009171.1 mouse_genomes_project X 31613883 31614020 - Gm44485 miRNA miRNA MGP_C3HHeJ_T0016216.1 MGP_C3HHeJ_G0014320.1 mouse_genomes_project X 71808560 71809208 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011684.1 MGP_C3HHeJ_G0009817.1 mouse_genomes_project X 137186072 137186396 - Gm24380 misc_RNA misc_RNA MGP_C3HHeJ_T0099816.1 MGP_C3HHeJ_G0038010.1 mouse_genomes_project X 164163426 164163533 - Gm22062 snRNA snRNA MGP_C3HHeJ_T0016239.1 MGP_C3HHeJ_G0014343.1 mouse_genomes_project X 75082407 75083515 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095884.1 MGP_C3HHeJ_G0035462.1 mouse_genomes_project X 68164050 68181433 + MGP_C3HHeJ_P0095884 Fate1 protein_coding protein_coding MGP_C3HHeJ_T0095885.1 MGP_C3HHeJ_G0035462.1 mouse_genomes_project X 68173952 68181433 + MGP_C3HHeJ_P0095885 Fate1 protein_coding protein_coding MGP_C3HHeJ_T0095886.1 MGP_C3HHeJ_G0035462.1 mouse_genomes_project X 68175591 68181155 + Fate1 protein_coding processed_transcript MGP_C3HHeJ_T0095875.1 MGP_C3HHeJ_G0035459.1 mouse_genomes_project X 68002965 68014261 + MGP_C3HHeJ_P0095875 Vma21 protein_coding protein_coding MGP_C3HHeJ_T0095876.1 MGP_C3HHeJ_G0035459.1 mouse_genomes_project X 68003799 68014261 + MGP_C3HHeJ_P0095876 Vma21 protein_coding protein_coding MGP_C3HHeJ_T0095877.1 MGP_C3HHeJ_G0035459.1 mouse_genomes_project X 68003831 68028778 + Vma21 protein_coding processed_transcript MGP_C3HHeJ_T0095878.1 MGP_C3HHeJ_G0035459.1 mouse_genomes_project X 68003831 68014261 + MGP_C3HHeJ_P0095878 Vma21 protein_coding protein_coding MGP_C3HHeJ_T0095808.1 MGP_C3HHeJ_G0035444.1 mouse_genomes_project X 63953932 63955519 - MGP_C3HHeJ_P0095808 4933436I01Rik protein_coding protein_coding MGP_C3HHeJ_T0011665.1 MGP_C3HHeJ_G0009798.1 mouse_genomes_project X 79205127 79205230 - Gm23671 misc_RNA misc_RNA MGP_C3HHeJ_T0016323.1 MGP_C3HHeJ_G0014427.1 mouse_genomes_project X 92155865 92157936 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011668.1 MGP_C3HHeJ_G0009801.1 mouse_genomes_project X 100569956 100570024 - Gm27733 misc_RNA misc_RNA MGP_C3HHeJ_T0095447.1 MGP_C3HHeJ_G0035316.1 mouse_genomes_project X 32161966 32241955 - MGP_C3HHeJ_P0095447 Sept6 protein_coding protein_coding MGP_C3HHeJ_T0095448.1 MGP_C3HHeJ_G0035316.1 mouse_genomes_project X 32164086 32241955 - MGP_C3HHeJ_P0095448 Sept6 protein_coding protein_coding MGP_C3HHeJ_T0095449.1 MGP_C3HHeJ_G0035316.1 mouse_genomes_project X 32165671 32241955 - MGP_C3HHeJ_P0095449 Sept6 protein_coding protein_coding MGP_C3HHeJ_T0095450.1 MGP_C3HHeJ_G0035316.1 mouse_genomes_project X 32218899 32244097 - MGP_C3HHeJ_P0095450 Sept6 protein_coding protein_coding MGP_C3HHeJ_T0095451.1 MGP_C3HHeJ_G0035316.1 mouse_genomes_project X 32224205 32241790 - Sept6 protein_coding retained_intron MGP_C3HHeJ_T0016582.1 MGP_C3HHeJ_G0014686.1 mouse_genomes_project X 142949929 142950625 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005516.1 MGP_C3HHeJ_G0004640.1 mouse_genomes_project X 66011371 66223273 - antisense antisense MGP_C3HHeJ_T0016215.1 MGP_C3HHeJ_G0014319.1 mouse_genomes_project X 71598149 71600078 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097480.1 MGP_C3HHeJ_G0035893.1 mouse_genomes_project X 157661128 157665509 + Eif1ax protein_coding retained_intron MGP_C3HHeJ_T0097481.1 MGP_C3HHeJ_G0035893.1 mouse_genomes_project X 157661128 157679811 + MGP_C3HHeJ_P0097481 Eif1ax protein_coding protein_coding MGP_C3HHeJ_T0016059.1 MGP_C3HHeJ_G0014163.1 mouse_genomes_project X 34458779 34459726 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096290.1 MGP_C3HHeJ_G0035545.1 mouse_genomes_project X 72656554 72659983 + MGP_C3HHeJ_P0096290 protein_coding protein_coding MGP_C3HHeJ_T0009292.1 MGP_C3HHeJ_G0007454.1 mouse_genomes_project X 41878617 42199918 - lincRNA lincRNA MGP_C3HHeJ_T0095095.1 MGP_C3HHeJ_G0035207.1 mouse_genomes_project X 2494490 2510432 + MGP_C3HHeJ_P0095095 Kcnd1 protein_coding protein_coding MGP_C3HHeJ_T0095096.1 MGP_C3HHeJ_G0035207.1 mouse_genomes_project X 2494508 2495469 + Kcnd1 protein_coding processed_transcript MGP_C3HHeJ_T0016392.1 MGP_C3HHeJ_G0014496.1 mouse_genomes_project X 103396785 103397398 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016445.1 MGP_C3HHeJ_G0014549.1 mouse_genomes_project X 113378101 113378436 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095788.1 MGP_C3HHeJ_G0035429.1 mouse_genomes_project X 56355784 56461554 - MGP_C3HHeJ_P0095788 Gm7073 protein_coding protein_coding MGP_C3HHeJ_T0011067.1 MGP_C3HHeJ_G0009200.1 mouse_genomes_project X 62838896 62838973 - Mir743b miRNA miRNA MGP_C3HHeJ_T0016328.1 MGP_C3HHeJ_G0014432.1 mouse_genomes_project X 93744047 93746412 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016128.1 MGP_C3HHeJ_G0014232.1 mouse_genomes_project X 52114087 52114378 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016308.1 MGP_C3HHeJ_G0014412.1 mouse_genomes_project X 91086925 91087778 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095344.1 MGP_C3HHeJ_G0035283.1 mouse_genomes_project X 15798133 15810060 + MGP_C3HHeJ_P0095344 Cdk16 protein_coding protein_coding MGP_C3HHeJ_T0095345.1 MGP_C3HHeJ_G0035283.1 mouse_genomes_project X 15798178 15804542 + Cdk16 protein_coding processed_transcript MGP_C3HHeJ_T0095346.1 MGP_C3HHeJ_G0035283.1 mouse_genomes_project X 15798597 15810060 + MGP_C3HHeJ_P0095346 Cdk16 protein_coding protein_coding MGP_C3HHeJ_T0095347.1 MGP_C3HHeJ_G0035283.1 mouse_genomes_project X 15804462 15806465 + Cdk16 protein_coding retained_intron MGP_C3HHeJ_T0095348.1 MGP_C3HHeJ_G0035283.1 mouse_genomes_project X 15806040 15806665 + Cdk16 protein_coding retained_intron MGP_C3HHeJ_T0095349.1 MGP_C3HHeJ_G0035283.1 mouse_genomes_project X 15806197 15807388 + Cdk16 protein_coding retained_intron MGP_C3HHeJ_T0095350.1 MGP_C3HHeJ_G0035283.1 mouse_genomes_project X 15806584 15807347 + Cdk16 protein_coding retained_intron MGP_C3HHeJ_T0095351.1 MGP_C3HHeJ_G0035283.1 mouse_genomes_project X 15806624 15809979 + Cdk16 protein_coding processed_transcript MGP_C3HHeJ_T0016310.1 MGP_C3HHeJ_G0014414.1 mouse_genomes_project X 91105800 91106501 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016159.1 MGP_C3HHeJ_G0014263.1 mouse_genomes_project X 58093897 58095127 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095063.1 MGP_C3HHeJ_G0035204.1 mouse_genomes_project X 2393546 2403253 - MGP_C3HHeJ_P0095063 Ccdc120 protein_coding protein_coding MGP_C3HHeJ_T0095064.1 MGP_C3HHeJ_G0035204.1 mouse_genomes_project X 2399793 2402122 - MGP_C3HHeJ_P0095064 Ccdc120 protein_coding protein_coding MGP_C3HHeJ_T0095065.1 MGP_C3HHeJ_G0035204.1 mouse_genomes_project X 2400050 2403220 - Ccdc120 protein_coding processed_transcript MGP_C3HHeJ_T0095066.1 MGP_C3HHeJ_G0035204.1 mouse_genomes_project X 2400064 2402143 - Ccdc120 protein_coding processed_transcript MGP_C3HHeJ_T0095067.1 MGP_C3HHeJ_G0035204.1 mouse_genomes_project X 2400075 2403236 - Ccdc120 protein_coding processed_transcript MGP_C3HHeJ_T0095068.1 MGP_C3HHeJ_G0035204.1 mouse_genomes_project X 2400202 2402119 - Ccdc120 protein_coding processed_transcript MGP_C3HHeJ_T0095069.1 MGP_C3HHeJ_G0035204.1 mouse_genomes_project X 2400292 2414521 - Ccdc120 protein_coding processed_transcript MGP_C3HHeJ_T0095070.1 MGP_C3HHeJ_G0035204.1 mouse_genomes_project X 2400345 2414513 - Ccdc120 protein_coding processed_transcript MGP_C3HHeJ_T0009307.1 MGP_C3HHeJ_G0007465.1 mouse_genomes_project X 82205873 82207644 + Gm14762 lincRNA lincRNA MGP_C3HHeJ_T0009308.1 MGP_C3HHeJ_G0007465.1 mouse_genomes_project X 82206642 82214793 + Gm14762 lincRNA lincRNA MGP_C3HHeJ_T0016562.1 MGP_C3HHeJ_G0014666.1 mouse_genomes_project X 139668700 139669060 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016530.1 MGP_C3HHeJ_G0014634.1 mouse_genomes_project X 134639222 134640933 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016334.1 MGP_C3HHeJ_G0014438.1 mouse_genomes_project X 94891151 94893036 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016590.1 MGP_C3HHeJ_G0014694.1 mouse_genomes_project X 143794758 143795842 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097099.1 MGP_C3HHeJ_G0035799.1 mouse_genomes_project X 136849967 136855279 + MGP_C3HHeJ_P0097099 Trap1a protein_coding protein_coding MGP_C3HHeJ_T0095697.1 MGP_C3HHeJ_G0035399.1 mouse_genomes_project X 49157675 49159239 + MGP_C3HHeJ_P0095697 Cxx1c protein_coding protein_coding MGP_C3HHeJ_T0011670.1 MGP_C3HHeJ_G0009803.1 mouse_genomes_project X 100589910 100589991 + Gm27520 misc_RNA misc_RNA MGP_C3HHeJ_T0095308.1 MGP_C3HHeJ_G0035273.1 mouse_genomes_project X 13449068 13496318 - 4930578C19Rik protein_coding processed_transcript MGP_C3HHeJ_T0095309.1 MGP_C3HHeJ_G0035273.1 mouse_genomes_project X 13452614 13496292 - MGP_C3HHeJ_P0095309 4930578C19Rik protein_coding protein_coding MGP_C3HHeJ_T0016480.1 MGP_C3HHeJ_G0014584.1 mouse_genomes_project X 124103930 124104294 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101299.1 MGP_C3HHeJ_G0039394.1 mouse_genomes_project X 69060245 69060977 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101300.1 MGP_C3HHeJ_G0039394.1 mouse_genomes_project X 69060245 69061144 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0102343.1 MGP_C3HHeJ_G0040306.1 mouse_genomes_project X 51593310 51608165 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099801.1 MGP_C3HHeJ_G0037995.1 mouse_genomes_project X 138251357 138251464 + Gm23199 snRNA snRNA MGP_C3HHeJ_T0016595.1 MGP_C3HHeJ_G0014699.1 mouse_genomes_project X 144370169 144371105 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097211.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141964188 141971438 + MGP_C3HHeJ_P0097211 Alg13 protein_coding protein_coding MGP_C3HHeJ_T0097212.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141964384 142026093 + MGP_C3HHeJ_P0097212 Alg13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097213.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141964387 141970391 + MGP_C3HHeJ_P0097213 Alg13 protein_coding protein_coding MGP_C3HHeJ_T0097214.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141964387 141970418 + MGP_C3HHeJ_P0097214 Alg13 protein_coding protein_coding MGP_C3HHeJ_T0097215.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141964387 141986759 + MGP_C3HHeJ_P0097215 Alg13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097216.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141964402 142026093 + MGP_C3HHeJ_P0097216 Alg13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097217.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141964407 141970262 + Alg13 protein_coding processed_transcript MGP_C3HHeJ_T0097218.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141964407 142026098 + MGP_C3HHeJ_P0097218 Alg13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097219.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141982892 141986026 + Alg13 protein_coding processed_transcript MGP_C3HHeJ_T0097220.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141983517 141990304 + Alg13 protein_coding retained_intron MGP_C3HHeJ_T0097221.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141986029 142026098 + Alg13 protein_coding processed_transcript MGP_C3HHeJ_T0097222.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141987460 141993523 + Alg13 protein_coding retained_intron MGP_C3HHeJ_T0097223.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141990280 142025452 + MGP_C3HHeJ_P0097223 Alg13 protein_coding unknown_likely_coding MGP_C3HHeJ_T0097224.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141994605 142026098 + Alg13 protein_coding processed_transcript MGP_C3HHeJ_T0097225.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 142005773 142021419 + Alg13 protein_coding processed_transcript MGP_C3HHeJ_T0016285.1 MGP_C3HHeJ_G0014389.1 mouse_genomes_project X 86586820 86588987 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098591.1 MGP_C3HHeJ_G0036785.1 mouse_genomes_project X 638258 709096 - Gm26618 sense_overlapping sense_overlapping MGP_C3HHeJ_T0096951.1 MGP_C3HHeJ_G0035747.1 mouse_genomes_project X 131850140 131852543 + MGP_C3HHeJ_P0096951 Rpl36a protein_coding protein_coding MGP_C3HHeJ_T0096952.1 MGP_C3HHeJ_G0035747.1 mouse_genomes_project X 131850175 131852549 + Rpl36a protein_coding retained_intron MGP_C3HHeJ_T0096953.1 MGP_C3HHeJ_G0035747.1 mouse_genomes_project X 131850176 131852549 + MGP_C3HHeJ_P0096953 Rpl36a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096954.1 MGP_C3HHeJ_G0035747.1 mouse_genomes_project X 131850187 131852520 + Rpl36a protein_coding retained_intron MGP_C3HHeJ_T0096955.1 MGP_C3HHeJ_G0035747.1 mouse_genomes_project X 131850576 131851503 + Rpl36a protein_coding retained_intron MGP_C3HHeJ_T0096956.1 MGP_C3HHeJ_G0035747.1 mouse_genomes_project X 131851567 131852483 + Rpl36a protein_coding retained_intron MGP_C3HHeJ_T0011663.1 MGP_C3HHeJ_G0009796.1 mouse_genomes_project X 64691853 64691909 + Gm27979 misc_RNA misc_RNA MGP_C3HHeJ_T0102333.1 MGP_C3HHeJ_G0040296.1 mouse_genomes_project X 3977784 3978297 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095567.1 MGP_C3HHeJ_G0035355.1 mouse_genomes_project X 40494491 40496379 + MGP_C3HHeJ_P0095567 Prr32 protein_coding protein_coding MGP_C3HHeJ_T0005506.1 MGP_C3HHeJ_G0004632.1 mouse_genomes_project X 44787913 44897110 - Gm14697 antisense antisense MGP_C3HHeJ_T0096165.1 MGP_C3HHeJ_G0035513.1 mouse_genomes_project X 70604182 70607360 + Plxna3 protein_coding processed_transcript MGP_C3HHeJ_T0096166.1 MGP_C3HHeJ_G0035513.1 mouse_genomes_project X 70604182 70619798 + MGP_C3HHeJ_P0096166 Plxna3 protein_coding protein_coding MGP_C3HHeJ_T0096167.1 MGP_C3HHeJ_G0035513.1 mouse_genomes_project X 70607573 70619792 + Plxna3 protein_coding retained_intron MGP_C3HHeJ_T0096168.1 MGP_C3HHeJ_G0035513.1 mouse_genomes_project X 70608862 70609820 + Plxna3 protein_coding retained_intron MGP_C3HHeJ_T0096169.1 MGP_C3HHeJ_G0035513.1 mouse_genomes_project X 70609442 70610948 + Plxna3 protein_coding retained_intron MGP_C3HHeJ_T0096170.1 MGP_C3HHeJ_G0035513.1 mouse_genomes_project X 70610348 70611445 + Plxna3 protein_coding retained_intron MGP_C3HHeJ_T0096171.1 MGP_C3HHeJ_G0035513.1 mouse_genomes_project X 70613374 70614425 + Plxna3 protein_coding retained_intron MGP_C3HHeJ_T0096172.1 MGP_C3HHeJ_G0035513.1 mouse_genomes_project X 70613457 70614268 + Plxna3 protein_coding retained_intron MGP_C3HHeJ_T0096173.1 MGP_C3HHeJ_G0035513.1 mouse_genomes_project X 70616695 70619054 + Plxna3 protein_coding retained_intron MGP_C3HHeJ_T0011136.1 MGP_C3HHeJ_G0009269.1 mouse_genomes_project X 165422075 165422203 + Gm44376 miRNA miRNA MGP_C3HHeJ_T0016220.1 MGP_C3HHeJ_G0014324.1 mouse_genomes_project X 72683020 72683792 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097426.1 MGP_C3HHeJ_G0035879.1 mouse_genomes_project X 153102883 153105117 - MGP_C3HHeJ_P0097426 protein_coding protein_coding MGP_C3HHeJ_T0009288.1 MGP_C3HHeJ_G0007450.1 mouse_genomes_project X 16492069 16501535 - lincRNA lincRNA MGP_C3HHeJ_T0016468.1 MGP_C3HHeJ_G0014572.1 mouse_genomes_project X 118529581 118531171 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016291.1 MGP_C3HHeJ_G0014395.1 mouse_genomes_project X 88167624 88168573 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095235.1 MGP_C3HHeJ_G0035251.1 mouse_genomes_project X 5363651 5478930 + Tspan7 protein_coding retained_intron MGP_C3HHeJ_T0095236.1 MGP_C3HHeJ_G0035251.1 mouse_genomes_project X 5363651 5478930 + MGP_C3HHeJ_P0095236 Tspan7 protein_coding protein_coding MGP_C3HHeJ_T0095237.1 MGP_C3HHeJ_G0035251.1 mouse_genomes_project X 5363651 5478930 + MGP_C3HHeJ_P0095237 Tspan7 protein_coding protein_coding MGP_C3HHeJ_T0016632.1 MGP_C3HHeJ_G0014736.1 mouse_genomes_project X 154903590 154904059 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096412.1 MGP_C3HHeJ_G0035589.1 mouse_genomes_project X 91129843 91141581 - MGP_C3HHeJ_P0096412 Fam90a1b protein_coding protein_coding MGP_C3HHeJ_T0096413.1 MGP_C3HHeJ_G0035589.1 mouse_genomes_project X 91130662 91140557 - MGP_C3HHeJ_P0096413 Fam90a1b protein_coding protein_coding MGP_C3HHeJ_T0096414.1 MGP_C3HHeJ_G0035589.1 mouse_genomes_project X 91131946 91140833 - MGP_C3HHeJ_P0096414 Fam90a1b protein_coding protein_coding MGP_C3HHeJ_T0016533.1 MGP_C3HHeJ_G0014637.1 mouse_genomes_project X 135117764 135121199 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011130.1 MGP_C3HHeJ_G0009263.1 mouse_genomes_project X 144879027 144879139 + Mir448 miRNA miRNA MGP_C3HHeJ_T0016578.1 MGP_C3HHeJ_G0014682.1 mouse_genomes_project X 142228026 142229157 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016676.1 MGP_C3HHeJ_G0014780.1 mouse_genomes_project X 162203405 162203621 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096802.1 MGP_C3HHeJ_G0035695.1 mouse_genomes_project X 105959568 105960456 - MGP_C3HHeJ_P0096802 Gm379 protein_coding protein_coding MGP_C3HHeJ_T0097652.1 MGP_C3HHeJ_G0035935.1 mouse_genomes_project X 164836308 164885474 - MGP_C3HHeJ_P0097652 Ofd1 protein_coding protein_coding MGP_C3HHeJ_T0096228.1 MGP_C3HHeJ_G0035529.1 mouse_genomes_project X 71219003 71236254 + MGP_C3HHeJ_P0096228 protein_coding protein_coding MGP_C3HHeJ_T0016139.1 MGP_C3HHeJ_G0014243.1 mouse_genomes_project X 55094334 55095010 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011064.1 MGP_C3HHeJ_G0009197.1 mouse_genomes_project X 56311823 56311913 - Mir505 miRNA miRNA MGP_C3HHeJ_T0097482.1 MGP_C3HHeJ_G0035894.1 mouse_genomes_project X 157702309 157796024 + MGP_C3HHeJ_P0097482 Map7d2 protein_coding protein_coding MGP_C3HHeJ_T0097483.1 MGP_C3HHeJ_G0035894.1 mouse_genomes_project X 157738246 157785767 + MGP_C3HHeJ_P0097483 Map7d2 protein_coding protein_coding MGP_C3HHeJ_T0097484.1 MGP_C3HHeJ_G0035894.1 mouse_genomes_project X 157752576 157780739 + MGP_C3HHeJ_P0097484 Map7d2 protein_coding protein_coding MGP_C3HHeJ_T0097485.1 MGP_C3HHeJ_G0035894.1 mouse_genomes_project X 157752588 157764616 + MGP_C3HHeJ_P0097485 Map7d2 protein_coding protein_coding MGP_C3HHeJ_T0016227.1 MGP_C3HHeJ_G0014331.1 mouse_genomes_project X 73608982 73609510 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016512.1 MGP_C3HHeJ_G0014616.1 mouse_genomes_project X 133339087 133339807 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096814.1 MGP_C3HHeJ_G0035700.1 mouse_genomes_project X 107195802 107197616 + MGP_C3HHeJ_P0096814 protein_coding protein_coding MGP_C3HHeJ_T0097147.1 MGP_C3HHeJ_G0035813.1 mouse_genomes_project X 138236244 138250370 + MGP_C3HHeJ_P0097147 Mid2 protein_coding protein_coding MGP_C3HHeJ_T0097148.1 MGP_C3HHeJ_G0035813.1 mouse_genomes_project X 138236601 138345212 + MGP_C3HHeJ_P0097148 Mid2 protein_coding protein_coding MGP_C3HHeJ_T0097149.1 MGP_C3HHeJ_G0035813.1 mouse_genomes_project X 138236717 138341492 + MGP_C3HHeJ_P0097149 Mid2 protein_coding protein_coding MGP_C3HHeJ_T0097150.1 MGP_C3HHeJ_G0035813.1 mouse_genomes_project X 138249689 138345212 + MGP_C3HHeJ_P0097150 Mid2 protein_coding protein_coding MGP_C3HHeJ_T0097151.1 MGP_C3HHeJ_G0035813.1 mouse_genomes_project X 138325396 138328551 + Mid2 protein_coding retained_intron MGP_C3HHeJ_T0095208.1 MGP_C3HHeJ_G0035242.1 mouse_genomes_project X 4168597 4182146 + MGP_C3HHeJ_P0095208 Xk protein_coding protein_coding MGP_C3HHeJ_T0009324.1 MGP_C3HHeJ_G0007476.1 mouse_genomes_project X 100678617 100747043 - Ftx lincRNA lincRNA MGP_C3HHeJ_T0009325.1 MGP_C3HHeJ_G0007476.1 mouse_genomes_project X 100680607 100739667 - Ftx lincRNA lincRNA MGP_C3HHeJ_T0009326.1 MGP_C3HHeJ_G0007476.1 mouse_genomes_project X 100687278 100739652 - Ftx lincRNA lincRNA MGP_C3HHeJ_T0009327.1 MGP_C3HHeJ_G0007476.1 mouse_genomes_project X 100687278 100746952 - Ftx lincRNA lincRNA MGP_C3HHeJ_T0009328.1 MGP_C3HHeJ_G0007476.1 mouse_genomes_project X 100727483 100747043 - Ftx lincRNA lincRNA MGP_C3HHeJ_T0009329.1 MGP_C3HHeJ_G0007476.1 mouse_genomes_project X 100727536 100745789 - Ftx lincRNA lincRNA MGP_C3HHeJ_T0016465.1 MGP_C3HHeJ_G0014569.1 mouse_genomes_project X 117521729 117522185 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096775.1 MGP_C3HHeJ_G0035688.1 mouse_genomes_project X 104448039 104471003 + MGP_C3HHeJ_P0096775 A630033H20Rik protein_coding protein_coding MGP_C3HHeJ_T0096776.1 MGP_C3HHeJ_G0035688.1 mouse_genomes_project X 104448039 104473263 + MGP_C3HHeJ_P0096776 A630033H20Rik protein_coding protein_coding MGP_C3HHeJ_T0096777.1 MGP_C3HHeJ_G0035688.1 mouse_genomes_project X 104448566 104471029 + MGP_C3HHeJ_P0096777 A630033H20Rik protein_coding protein_coding MGP_C3HHeJ_T0096778.1 MGP_C3HHeJ_G0035688.1 mouse_genomes_project X 104448566 104473263 + MGP_C3HHeJ_P0096778 A630033H20Rik protein_coding protein_coding MGP_C3HHeJ_T0096779.1 MGP_C3HHeJ_G0035688.1 mouse_genomes_project X 104448710 104470749 + MGP_C3HHeJ_P0096779 A630033H20Rik protein_coding protein_coding MGP_C3HHeJ_T0096780.1 MGP_C3HHeJ_G0035688.1 mouse_genomes_project X 104448727 104473259 + MGP_C3HHeJ_P0096780 A630033H20Rik protein_coding protein_coding MGP_C3HHeJ_T0095649.1 MGP_C3HHeJ_G0035378.1 mouse_genomes_project X 45310348 45311281 - MGP_C3HHeJ_P0095649 Olfr1322 protein_coding protein_coding MGP_C3HHeJ_T0009306.1 MGP_C3HHeJ_G0007464.1 mouse_genomes_project X 77386545 77389576 - Gm26775 lincRNA lincRNA MGP_C3HHeJ_T0016540.1 MGP_C3HHeJ_G0014644.1 mouse_genomes_project X 137209621 137212333 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096224.1 MGP_C3HHeJ_G0035525.1 mouse_genomes_project X 71143726 71153021 + MGP_C3HHeJ_P0096224 protein_coding protein_coding MGP_C3HHeJ_T0018413.1 MGP_C3HHeJ_G0015544.1 mouse_genomes_project X 99216742 99334002 + Gm14858 processed_transcript processed_transcript MGP_C3HHeJ_T0018414.1 MGP_C3HHeJ_G0015544.1 mouse_genomes_project X 99216871 99221886 + Gm14858 processed_transcript processed_transcript MGP_C3HHeJ_T0016187.1 MGP_C3HHeJ_G0014291.1 mouse_genomes_project X 64633526 64634741 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011133.1 MGP_C3HHeJ_G0009266.1 mouse_genomes_project X 149876873 149876956 + Mirlet7f-2 miRNA miRNA MGP_C3HHeJ_T0016135.1 MGP_C3HHeJ_G0014239.1 mouse_genomes_project X 54125760 54126440 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016231.1 MGP_C3HHeJ_G0014335.1 mouse_genomes_project X 74345532 74345778 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009305.1 MGP_C3HHeJ_G0007463.1 mouse_genomes_project X 72267968 72282132 - Gm14715 lincRNA lincRNA MGP_C3HHeJ_T0101016.1 MGP_C3HHeJ_G0039210.1 mouse_genomes_project X 2192406 2192539 - Gm23082 snoRNA snoRNA MGP_C3HHeJ_T0016063.1 MGP_C3HHeJ_G0014167.1 mouse_genomes_project X 35121517 35121908 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096349.1 MGP_C3HHeJ_G0035565.1 mouse_genomes_project X 82080275 82156847 - MGP_C3HHeJ_P0096349 Gk protein_coding protein_coding MGP_C3HHeJ_T0096350.1 MGP_C3HHeJ_G0035565.1 mouse_genomes_project X 82080275 82156834 - MGP_C3HHeJ_P0096350 Gk protein_coding protein_coding MGP_C3HHeJ_T0096351.1 MGP_C3HHeJ_G0035565.1 mouse_genomes_project X 82080275 82157029 - MGP_C3HHeJ_P0096351 Gk protein_coding protein_coding MGP_C3HHeJ_T0096352.1 MGP_C3HHeJ_G0035565.1 mouse_genomes_project X 82080275 82156863 - MGP_C3HHeJ_P0096352 Gk protein_coding protein_coding MGP_C3HHeJ_T0096353.1 MGP_C3HHeJ_G0035565.1 mouse_genomes_project X 82085334 82090789 - Gk protein_coding processed_transcript MGP_C3HHeJ_T0096354.1 MGP_C3HHeJ_G0035565.1 mouse_genomes_project X 82090708 82092772 - Gk protein_coding retained_intron MGP_C3HHeJ_T0096355.1 MGP_C3HHeJ_G0035565.1 mouse_genomes_project X 82091005 82116576 - Gk protein_coding retained_intron MGP_C3HHeJ_T0096356.1 MGP_C3HHeJ_G0035565.1 mouse_genomes_project X 82138495 82141954 - Gk protein_coding retained_intron MGP_C3HHeJ_T0016623.1 MGP_C3HHeJ_G0014727.1 mouse_genomes_project X 153365645 153366005 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011085.1 MGP_C3HHeJ_G0009218.1 mouse_genomes_project X 67699910 67700002 - Gm23945 miRNA miRNA MGP_C3HHeJ_T0016660.1 MGP_C3HHeJ_G0014764.1 mouse_genomes_project X 159045564 159045847 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016420.1 MGP_C3HHeJ_G0014524.1 mouse_genomes_project X 109650483 109654220 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016210.1 MGP_C3HHeJ_G0014314.1 mouse_genomes_project X 70862455 70863204 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101311.1 MGP_C3HHeJ_G0039400.1 mouse_genomes_project X 125528544 125529186 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101025.1 MGP_C3HHeJ_G0039219.1 mouse_genomes_project X 64699177 64699305 - Gm22435 snoRNA snoRNA MGP_C3HHeJ_T0096923.1 MGP_C3HHeJ_G0035739.1 mouse_genomes_project X 131381756 131394638 - MGP_C3HHeJ_P0096923 Xkrx protein_coding protein_coding MGP_C3HHeJ_T0096924.1 MGP_C3HHeJ_G0035739.1 mouse_genomes_project X 131383823 131394786 - Xkrx protein_coding processed_transcript MGP_C3HHeJ_T0095603.1 MGP_C3HHeJ_G0035365.1 mouse_genomes_project X 43860097 43905808 - MGP_C3HHeJ_P0095603 Elf4 protein_coding protein_coding MGP_C3HHeJ_T0095604.1 MGP_C3HHeJ_G0035365.1 mouse_genomes_project X 43860100 43915274 - MGP_C3HHeJ_P0095604 Elf4 protein_coding protein_coding MGP_C3HHeJ_T0095605.1 MGP_C3HHeJ_G0035365.1 mouse_genomes_project X 43865710 43915274 - MGP_C3HHeJ_P0095605 Elf4 protein_coding protein_coding MGP_C3HHeJ_T0016257.1 MGP_C3HHeJ_G0014361.1 mouse_genomes_project X 81605386 81606501 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095352.1 MGP_C3HHeJ_G0035284.1 mouse_genomes_project X 15815131 15831948 + MGP_C3HHeJ_P0095352 Usp11 protein_coding protein_coding MGP_C3HHeJ_T0095353.1 MGP_C3HHeJ_G0035284.1 mouse_genomes_project X 15815159 15824379 + Usp11 protein_coding processed_transcript MGP_C3HHeJ_T0095354.1 MGP_C3HHeJ_G0035284.1 mouse_genomes_project X 15815185 15829094 + Usp11 protein_coding retained_intron MGP_C3HHeJ_T0095355.1 MGP_C3HHeJ_G0035284.1 mouse_genomes_project X 15823050 15831946 + Usp11 protein_coding retained_intron MGP_C3HHeJ_T0096427.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91880170 92033283 - MGP_C3HHeJ_P0096427 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096428.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91880173 92001303 - MGP_C3HHeJ_P0096428 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096429.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91880179 92001405 - MGP_C3HHeJ_P0096429 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096430.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91881412 92033286 - MGP_C3HHeJ_P0096430 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096431.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91881501 92033614 - MGP_C3HHeJ_P0096431 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096432.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91882759 92033602 - MGP_C3HHeJ_P0096432 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096433.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91882790 92033637 - MGP_C3HHeJ_P0096433 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096434.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91882839 91914613 - MGP_C3HHeJ_P0096434 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096435.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91883154 91886180 - MGP_C3HHeJ_P0096435 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096436.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91883155 91890186 - MGP_C3HHeJ_P0096436 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096437.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91883208 92000516 - MGP_C3HHeJ_P0096437 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096438.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91910073 92000744 - MGP_C3HHeJ_P0096438 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096439.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91914533 92033233 - MGP_C3HHeJ_P0096439 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096440.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91934583 92001458 - MGP_C3HHeJ_P0096440 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096441.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91947005 92001357 - MGP_C3HHeJ_P0096441 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0097411.1 MGP_C3HHeJ_G0035871.1 mouse_genomes_project X 151644008 151644839 + MGP_C3HHeJ_P0097411 Cypt3 protein_coding protein_coding MGP_C3HHeJ_T0097412.1 MGP_C3HHeJ_G0035871.1 mouse_genomes_project X 151644008 151644845 + MGP_C3HHeJ_P0097412 Cypt3 protein_coding protein_coding MGP_C3HHeJ_T0096648.1 MGP_C3HHeJ_G0035645.1 mouse_genomes_project X 99020150 99024803 - MGP_C3HHeJ_P0096648 Rgag4 protein_coding protein_coding MGP_C3HHeJ_T0096649.1 MGP_C3HHeJ_G0035645.1 mouse_genomes_project X 99020150 99024911 - MGP_C3HHeJ_P0096649 Rgag4 protein_coding protein_coding MGP_C3HHeJ_T0096650.1 MGP_C3HHeJ_G0035645.1 mouse_genomes_project X 99020340 99021207 - Rgag4 protein_coding processed_transcript MGP_C3HHeJ_T0102346.1 MGP_C3HHeJ_G0040309.1 mouse_genomes_project X 66455936 66456776 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016473.1 MGP_C3HHeJ_G0014577.1 mouse_genomes_project X 119438660 119438956 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095630.1 MGP_C3HHeJ_G0035372.1 mouse_genomes_project X 44300006 44333588 - MGP_C3HHeJ_P0095630 Gm595 protein_coding protein_coding MGP_C3HHeJ_T0098218.1 MGP_C3HHeJ_G0036430.1 mouse_genomes_project X 8165709 8165821 - n-R5s3 rRNA rRNA MGP_C3HHeJ_T0099751.1 MGP_C3HHeJ_G0037945.1 mouse_genomes_project X 17574960 17575063 + Gm25812 snRNA snRNA MGP_C3HHeJ_T0016138.1 MGP_C3HHeJ_G0014242.1 mouse_genomes_project X 54591844 54592306 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095679.1 MGP_C3HHeJ_G0035391.1 mouse_genomes_project X 48402544 48438980 + MGP_C3HHeJ_P0095679 Phf6 protein_coding protein_coding MGP_C3HHeJ_T0095680.1 MGP_C3HHeJ_G0035391.1 mouse_genomes_project X 48402623 48447361 + MGP_C3HHeJ_P0095680 Phf6 protein_coding protein_coding MGP_C3HHeJ_T0095681.1 MGP_C3HHeJ_G0035391.1 mouse_genomes_project X 48415068 48431109 + Phf6 protein_coding processed_transcript MGP_C3HHeJ_T0095682.1 MGP_C3HHeJ_G0035391.1 mouse_genomes_project X 48415070 48431128 + Phf6 protein_coding processed_transcript MGP_C3HHeJ_T0016007.1 MGP_C3HHeJ_G0014111.1 mouse_genomes_project X 8349133 8349946 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011057.1 MGP_C3HHeJ_G0009190.1 mouse_genomes_project X 48543815 48543900 - Mir542 miRNA miRNA MGP_C3HHeJ_T0016496.1 MGP_C3HHeJ_G0014600.1 mouse_genomes_project X 130105913 130106965 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016050.1 MGP_C3HHeJ_G0014154.1 mouse_genomes_project X 31442427 31443033 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016629.1 MGP_C3HHeJ_G0014733.1 mouse_genomes_project X 153704962 153705532 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095475.1 MGP_C3HHeJ_G0035333.1 mouse_genomes_project X 33398310 33406359 - MGP_C3HHeJ_P0095475 Rhox12 protein_coding protein_coding MGP_C3HHeJ_T0095476.1 MGP_C3HHeJ_G0035333.1 mouse_genomes_project X 33398411 33403640 - MGP_C3HHeJ_P0095476 Rhox12 protein_coding protein_coding MGP_C3HHeJ_T0095477.1 MGP_C3HHeJ_G0035333.1 mouse_genomes_project X 33399810 33406239 - MGP_C3HHeJ_P0095477 Rhox12 protein_coding protein_coding MGP_C3HHeJ_T0096184.1 MGP_C3HHeJ_G0035516.1 mouse_genomes_project X 70648293 70650088 - MGP_C3HHeJ_P0096184 Slc10a3 protein_coding protein_coding MGP_C3HHeJ_T0096185.1 MGP_C3HHeJ_G0035516.1 mouse_genomes_project X 70648293 70652319 - MGP_C3HHeJ_P0096185 Slc10a3 protein_coding protein_coding MGP_C3HHeJ_T0096186.1 MGP_C3HHeJ_G0035516.1 mouse_genomes_project X 70648293 70652378 - MGP_C3HHeJ_P0096186 Slc10a3 protein_coding protein_coding MGP_C3HHeJ_T0096187.1 MGP_C3HHeJ_G0035516.1 mouse_genomes_project X 70648293 70652422 - MGP_C3HHeJ_P0096187 Slc10a3 protein_coding protein_coding MGP_C3HHeJ_T0095408.1 MGP_C3HHeJ_G0035301.1 mouse_genomes_project X 19031459 19055437 + MGP_C3HHeJ_P0095408 Gm4907 protein_coding protein_coding MGP_C3HHeJ_T0095409.1 MGP_C3HHeJ_G0035301.1 mouse_genomes_project X 19040650 19055327 + MGP_C3HHeJ_P0095409 Gm4907 protein_coding protein_coding MGP_C3HHeJ_T0011087.1 MGP_C3HHeJ_G0009220.1 mouse_genomes_project X 68446286 68446371 - Mir452 miRNA miRNA MGP_C3HHeJ_T0096282.1 MGP_C3HHeJ_G0035541.1 mouse_genomes_project X 71913882 71920068 - MGP_C3HHeJ_P0096282 Rab39b protein_coding protein_coding MGP_C3HHeJ_T0016102.1 MGP_C3HHeJ_G0014206.1 mouse_genomes_project X 45013682 45013941 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096501.1 MGP_C3HHeJ_G0035612.1 mouse_genomes_project X 95996616 96009433 + MGP_C3HHeJ_P0096501 Efnb1 protein_coding protein_coding MGP_C3HHeJ_T0096502.1 MGP_C3HHeJ_G0035612.1 mouse_genomes_project X 95998610 96007674 + Efnb1 protein_coding processed_transcript MGP_C3HHeJ_T0016098.1 MGP_C3HHeJ_G0014202.1 mouse_genomes_project X 43749138 43749486 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011089.1 MGP_C3HHeJ_G0009222.1 mouse_genomes_project X 68781242 68781322 - Mir105 miRNA miRNA MGP_C3HHeJ_T0095803.1 MGP_C3HHeJ_G0035440.1 mouse_genomes_project X 62433581 62434445 - MGP_C3HHeJ_P0095803 4930447F04Rik protein_coding protein_coding MGP_C3HHeJ_T0016126.1 MGP_C3HHeJ_G0014230.1 mouse_genomes_project X 51864274 51864757 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016382.1 MGP_C3HHeJ_G0014486.1 mouse_genomes_project X 102148677 102149172 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016226.1 MGP_C3HHeJ_G0014330.1 mouse_genomes_project X 73606037 73607021 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016353.1 MGP_C3HHeJ_G0014457.1 mouse_genomes_project X 99169750 99170107 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095494.1 MGP_C3HHeJ_G0035339.1 mouse_genomes_project X 33866590 33898346 - MGP_C3HHeJ_P0095494 Cul4b protein_coding protein_coding MGP_C3HHeJ_T0095495.1 MGP_C3HHeJ_G0035339.1 mouse_genomes_project X 33866590 33910976 - MGP_C3HHeJ_P0095495 Cul4b protein_coding protein_coding MGP_C3HHeJ_T0095496.1 MGP_C3HHeJ_G0035339.1 mouse_genomes_project X 33866886 33898483 - MGP_C3HHeJ_P0095496 Cul4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095497.1 MGP_C3HHeJ_G0035339.1 mouse_genomes_project X 33866890 33910963 - MGP_C3HHeJ_P0095497 Cul4b protein_coding protein_coding MGP_C3HHeJ_T0102338.1 MGP_C3HHeJ_G0040301.1 mouse_genomes_project X 32968893 32969404 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016614.1 MGP_C3HHeJ_G0014718.1 mouse_genomes_project X 151283004 151283278 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015981.1 MGP_C3HHeJ_G0014085.1 mouse_genomes_project X 3774520 3775114 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018385.1 MGP_C3HHeJ_G0015534.1 mouse_genomes_project X 35449320 35868183 + processed_transcript processed_transcript MGP_C3HHeJ_T0097623.1 MGP_C3HHeJ_G0035928.1 mouse_genomes_project X 162940605 162972442 + MGP_C3HHeJ_P0097623 Asb9 protein_coding protein_coding MGP_C3HHeJ_T0016538.1 MGP_C3HHeJ_G0014642.1 mouse_genomes_project X 136759653 136760346 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016687.1 MGP_C3HHeJ_G0014791.1 mouse_genomes_project X 165495761 165496296 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097392.1 MGP_C3HHeJ_G0035863.1 mouse_genomes_project X 150615776 150784137 - MGP_C3HHeJ_P0097392 Shroom2 protein_coding protein_coding MGP_C3HHeJ_T0097393.1 MGP_C3HHeJ_G0035863.1 mouse_genomes_project X 150616259 150653262 - Shroom2 protein_coding processed_transcript MGP_C3HHeJ_T0097394.1 MGP_C3HHeJ_G0035863.1 mouse_genomes_project X 150616259 150784141 - MGP_C3HHeJ_P0097394 Shroom2 protein_coding protein_coding MGP_C3HHeJ_T0097395.1 MGP_C3HHeJ_G0035863.1 mouse_genomes_project X 150618795 150681152 - Shroom2 protein_coding processed_transcript MGP_C3HHeJ_T0097396.1 MGP_C3HHeJ_G0035863.1 mouse_genomes_project X 150626259 150652643 - Shroom2 protein_coding processed_transcript MGP_C3HHeJ_T0097397.1 MGP_C3HHeJ_G0035863.1 mouse_genomes_project X 150626468 150652829 - Shroom2 protein_coding processed_transcript MGP_C3HHeJ_T0016580.1 MGP_C3HHeJ_G0014684.1 mouse_genomes_project X 142517991 142520601 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097169.1 MGP_C3HHeJ_G0035822.1 mouse_genomes_project X 139484533 139486306 - Gm15294 protein_coding translated_processed_pseudogene MGP_C3HHeJ_T0097170.1 MGP_C3HHeJ_G0035822.1 mouse_genomes_project X 139485575 139485941 - MGP_C3HHeJ_P0097170 Gm15294 protein_coding protein_coding MGP_C3HHeJ_T0101318.1 MGP_C3HHeJ_G0039406.1 mouse_genomes_project X 150498714 150500914 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101319.1 MGP_C3HHeJ_G0039406.1 mouse_genomes_project X 150499487 150500629 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0096328.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 79256111 79823163 + protein_coding retained_intron MGP_C3HHeJ_T0096329.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 79256144 81574136 + MGP_C3HHeJ_P0096329 protein_coding protein_coding MGP_C3HHeJ_T0096330.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 79351085 80070159 + protein_coding retained_intron MGP_C3HHeJ_T0096332.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 80198946 80239500 + protein_coding processed_transcript MGP_C3HHeJ_T0096333.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 80282107 80283109 + protein_coding processed_transcript MGP_C3HHeJ_T0096334.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 80432166 80659828 + protein_coding processed_transcript MGP_C3HHeJ_T0096335.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 80947686 81512397 + protein_coding retained_intron MGP_C3HHeJ_T0096336.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 81121750 81332493 + protein_coding retained_intron MGP_C3HHeJ_T0096337.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 81409867 81417131 + protein_coding retained_intron MGP_C3HHeJ_T0096338.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 81409891 81506022 + protein_coding retained_intron MGP_C3HHeJ_T0096339.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 81409894 81512395 + protein_coding retained_intron MGP_C3HHeJ_T0096340.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 81409945 81573041 + MGP_C3HHeJ_P0096340 protein_coding unknown_likely_coding MGP_C3HHeJ_T0096341.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 81409985 81573034 + MGP_C3HHeJ_P0096341 protein_coding protein_coding MGP_C3HHeJ_T0096342.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 81409985 81570493 + MGP_C3HHeJ_P0096342 protein_coding protein_coding MGP_C3HHeJ_T0096343.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 81545945 81570832 + protein_coding processed_transcript MGP_C3HHeJ_T0096525.1 MGP_C3HHeJ_G0035619.1 mouse_genomes_project X 97416289 97437323 + Dgat2l6 protein_coding retained_intron MGP_C3HHeJ_T0096526.1 MGP_C3HHeJ_G0035619.1 mouse_genomes_project X 97416292 97437576 + MGP_C3HHeJ_P0096526 Dgat2l6 protein_coding protein_coding MGP_C3HHeJ_T0095106.1 MGP_C3HHeJ_G0035209.1 mouse_genomes_project X 2551697 2553757 + Pim2 protein_coding retained_intron MGP_C3HHeJ_T0095107.1 MGP_C3HHeJ_G0035209.1 mouse_genomes_project X 2551737 2556867 + MGP_C3HHeJ_P0095107 Pim2 protein_coding protein_coding MGP_C3HHeJ_T0095108.1 MGP_C3HHeJ_G0035209.1 mouse_genomes_project X 2551741 2556863 + MGP_C3HHeJ_P0095108 Pim2 protein_coding protein_coding MGP_C3HHeJ_T0095109.1 MGP_C3HHeJ_G0035209.1 mouse_genomes_project X 2552053 2554837 + Pim2 protein_coding processed_transcript MGP_C3HHeJ_T0011036.1 MGP_C3HHeJ_G0009169.1 mouse_genomes_project X 15981911 15981968 - Mir5617 miRNA miRNA MGP_C3HHeJ_T0016013.1 MGP_C3HHeJ_G0014117.1 mouse_genomes_project X 10541346 10541888 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102354.1 MGP_C3HHeJ_G0040317.1 mouse_genomes_project X 74378794 74389627 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016692.1 MGP_C3HHeJ_G0014796.1 mouse_genomes_project X 166882292 166882687 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016450.1 MGP_C3HHeJ_G0014554.1 mouse_genomes_project X 114662943 114664629 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099809.1 MGP_C3HHeJ_G0038003.1 mouse_genomes_project X 152861402 152861510 + Gm22359 snRNA snRNA MGP_C3HHeJ_T0097316.1 MGP_C3HHeJ_G0035851.1 mouse_genomes_project X 149115780 149264418 + MGP_C3HHeJ_P0097316 Wnk3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0097317.1 MGP_C3HHeJ_G0035851.1 mouse_genomes_project X 149145601 149264476 + MGP_C3HHeJ_P0097317 Wnk3 protein_coding protein_coding MGP_C3HHeJ_T0097318.1 MGP_C3HHeJ_G0035851.1 mouse_genomes_project X 149145663 149264418 + MGP_C3HHeJ_P0097318 Wnk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097319.1 MGP_C3HHeJ_G0035851.1 mouse_genomes_project X 149145663 149267599 + MGP_C3HHeJ_P0097319 Wnk3 protein_coding protein_coding MGP_C3HHeJ_T0097320.1 MGP_C3HHeJ_G0035851.1 mouse_genomes_project X 149155273 149174976 + Wnk3 protein_coding processed_transcript MGP_C3HHeJ_T0097321.1 MGP_C3HHeJ_G0035851.1 mouse_genomes_project X 149238044 149269442 + Wnk3 protein_coding processed_transcript MGP_C3HHeJ_T0098221.1 MGP_C3HHeJ_G0036433.1 mouse_genomes_project X 45305155 45305243 + n-R5s6 rRNA rRNA MGP_C3HHeJ_T0102355.1 MGP_C3HHeJ_G0040318.1 mouse_genomes_project X 82702861 82704494 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095822.1 MGP_C3HHeJ_G0035447.1 mouse_genomes_project X 64783505 64841495 + MGP_C3HHeJ_P0095822 Fmr1nb protein_coding protein_coding MGP_C3HHeJ_T0095823.1 MGP_C3HHeJ_G0035447.1 mouse_genomes_project X 64783547 64841495 + MGP_C3HHeJ_P0095823 Fmr1nb protein_coding protein_coding MGP_C3HHeJ_T0095824.1 MGP_C3HHeJ_G0035447.1 mouse_genomes_project X 64783600 64841495 + MGP_C3HHeJ_P0095824 Fmr1nb protein_coding protein_coding MGP_C3HHeJ_T0095220.1 MGP_C3HHeJ_G0035247.1 mouse_genomes_project X 4752913 4855509 + MGP_C3HHeJ_P0095220 Sytl5 protein_coding protein_coding MGP_C3HHeJ_T0095221.1 MGP_C3HHeJ_G0035247.1 mouse_genomes_project X 4752913 4855509 + MGP_C3HHeJ_P0095221 Sytl5 protein_coding protein_coding MGP_C3HHeJ_T0016125.1 MGP_C3HHeJ_G0014229.1 mouse_genomes_project X 51708377 51712983 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096631.1 MGP_C3HHeJ_G0035641.1 mouse_genomes_project X 98566290 98614520 + MGP_C3HHeJ_P0096631 Ogt protein_coding protein_coding MGP_C3HHeJ_T0096632.1 MGP_C3HHeJ_G0035641.1 mouse_genomes_project X 98566292 98581016 + Ogt protein_coding retained_intron MGP_C3HHeJ_T0096633.1 MGP_C3HHeJ_G0035641.1 mouse_genomes_project X 98566294 98615931 + MGP_C3HHeJ_P0096633 Ogt protein_coding protein_coding MGP_C3HHeJ_T0096634.1 MGP_C3HHeJ_G0035641.1 mouse_genomes_project X 98566324 98582457 + Ogt protein_coding processed_transcript MGP_C3HHeJ_T0096635.1 MGP_C3HHeJ_G0035641.1 mouse_genomes_project X 98566338 98582725 + Ogt protein_coding retained_intron MGP_C3HHeJ_T0096636.1 MGP_C3HHeJ_G0035641.1 mouse_genomes_project X 98566370 98581033 + Ogt protein_coding retained_intron MGP_C3HHeJ_T0096637.1 MGP_C3HHeJ_G0035641.1 mouse_genomes_project X 98583483 98614738 + Ogt protein_coding processed_transcript MGP_C3HHeJ_T0016672.1 MGP_C3HHeJ_G0014776.1 mouse_genomes_project X 161609083 161609564 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016068.1 MGP_C3HHeJ_G0014172.1 mouse_genomes_project X 36050848 36051408 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016354.1 MGP_C3HHeJ_G0014458.1 mouse_genomes_project X 99629791 99631196 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097123.1 MGP_C3HHeJ_G0035807.1 mouse_genomes_project X 137438294 137547499 - MGP_C3HHeJ_P0097123 Rbm41 protein_coding protein_coding MGP_C3HHeJ_T0097124.1 MGP_C3HHeJ_G0035807.1 mouse_genomes_project X 137492851 137547461 - MGP_C3HHeJ_P0097124 Rbm41 protein_coding protein_coding MGP_C3HHeJ_T0097125.1 MGP_C3HHeJ_G0035807.1 mouse_genomes_project X 137492883 137547446 - MGP_C3HHeJ_P0097125 Rbm41 protein_coding protein_coding MGP_C3HHeJ_T0097126.1 MGP_C3HHeJ_G0035807.1 mouse_genomes_project X 137493714 137547455 - MGP_C3HHeJ_P0097126 Rbm41 protein_coding protein_coding MGP_C3HHeJ_T0097127.1 MGP_C3HHeJ_G0035807.1 mouse_genomes_project X 137516512 137542986 - Rbm41 protein_coding retained_intron MGP_C3HHeJ_T0097128.1 MGP_C3HHeJ_G0035807.1 mouse_genomes_project X 137517296 137547440 - Rbm41 protein_coding processed_transcript MGP_C3HHeJ_T0097129.1 MGP_C3HHeJ_G0035807.1 mouse_genomes_project X 137541260 137547470 - Rbm41 protein_coding retained_intron MGP_C3HHeJ_T0094986.1 MGP_C3HHeJ_G0035182.1 mouse_genomes_project X 60259 62627 - MGP_C3HHeJ_P0094986 Mycs protein_coding protein_coding MGP_C3HHeJ_T0095271.1 MGP_C3HHeJ_G0035259.1 mouse_genomes_project X 8433046 8456261 + MGP_C3HHeJ_P0095271 Nyx protein_coding protein_coding MGP_C3HHeJ_T0101307.1 MGP_C3HHeJ_G0039398.1 mouse_genomes_project X 102148656 102149222 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101308.1 MGP_C3HHeJ_G0039398.1 mouse_genomes_project X 102148677 102149172 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0016267.1 MGP_C3HHeJ_G0014371.1 mouse_genomes_project X 84204663 84205674 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097563.1 MGP_C3HHeJ_G0035911.1 mouse_genomes_project X 161248902 161280067 - MGP_C3HHeJ_P0097563 Syap1 protein_coding protein_coding MGP_C3HHeJ_T0097564.1 MGP_C3HHeJ_G0035911.1 mouse_genomes_project X 161249754 161255109 - Syap1 protein_coding retained_intron MGP_C3HHeJ_T0095742.1 MGP_C3HHeJ_G0035417.1 mouse_genomes_project X 52932903 52953096 + MGP_C3HHeJ_P0095742 Vgll1 protein_coding protein_coding MGP_C3HHeJ_T0095743.1 MGP_C3HHeJ_G0035417.1 mouse_genomes_project X 52934109 52952085 + MGP_C3HHeJ_P0095743 Vgll1 protein_coding protein_coding MGP_C3HHeJ_T0095744.1 MGP_C3HHeJ_G0035417.1 mouse_genomes_project X 52934171 52953096 + MGP_C3HHeJ_P0095744 Vgll1 protein_coding protein_coding MGP_C3HHeJ_T0095745.1 MGP_C3HHeJ_G0035417.1 mouse_genomes_project X 52945024 52948423 + MGP_C3HHeJ_P0095745 Vgll1 protein_coding protein_coding MGP_C3HHeJ_T0095720.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52569756 52635960 + MGP_C3HHeJ_P0095720 Fhl1 protein_coding protein_coding MGP_C3HHeJ_T0095721.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52569834 52635952 + MGP_C3HHeJ_P0095721 Fhl1 protein_coding protein_coding MGP_C3HHeJ_T0095722.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52570092 52634849 + MGP_C3HHeJ_P0095722 Fhl1 protein_coding protein_coding MGP_C3HHeJ_T0095723.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52622056 52635954 + MGP_C3HHeJ_P0095723 Fhl1 protein_coding protein_coding MGP_C3HHeJ_T0095724.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52622342 52635954 + MGP_C3HHeJ_P0095724 Fhl1 protein_coding protein_coding MGP_C3HHeJ_T0095725.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52622349 52635202 + MGP_C3HHeJ_P0095725 Fhl1 protein_coding protein_coding MGP_C3HHeJ_T0095726.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52622438 52631819 + MGP_C3HHeJ_P0095726 Fhl1 protein_coding protein_coding MGP_C3HHeJ_T0095727.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52629144 52633280 + MGP_C3HHeJ_P0095727 Fhl1 protein_coding protein_coding MGP_C3HHeJ_T0095728.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52630338 52631869 + MGP_C3HHeJ_P0095728 Fhl1 protein_coding protein_coding MGP_C3HHeJ_T0095729.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52630611 52632357 + Fhl1 protein_coding processed_transcript MGP_C3HHeJ_T0096291.1 MGP_C3HHeJ_G0035546.1 mouse_genomes_project X 72771495 72776118 + MGP_C3HHeJ_P0096291 Cldn34b4 protein_coding protein_coding MGP_C3HHeJ_T0096292.1 MGP_C3HHeJ_G0035546.1 mouse_genomes_project X 72771597 72776027 + MGP_C3HHeJ_P0096292 Cldn34b4 protein_coding protein_coding MGP_C3HHeJ_T0095266.1 MGP_C3HHeJ_G0035258.1 mouse_genomes_project X 8247367 8263313 + Ddx3x protein_coding processed_transcript MGP_C3HHeJ_T0095267.1 MGP_C3HHeJ_G0035258.1 mouse_genomes_project X 8247369 8262783 + MGP_C3HHeJ_P0095267 Ddx3x protein_coding protein_coding MGP_C3HHeJ_T0095268.1 MGP_C3HHeJ_G0035258.1 mouse_genomes_project X 8247377 8255922 + Ddx3x protein_coding retained_intron MGP_C3HHeJ_T0095269.1 MGP_C3HHeJ_G0035258.1 mouse_genomes_project X 8255333 8256902 + Ddx3x protein_coding retained_intron MGP_C3HHeJ_T0095270.1 MGP_C3HHeJ_G0035258.1 mouse_genomes_project X 8255834 8257965 + Ddx3x protein_coding retained_intron MGP_C3HHeJ_T0095469.1 MGP_C3HHeJ_G0035328.1 mouse_genomes_project X 33162605 33165315 - MGP_C3HHeJ_P0095469 protein_coding protein_coding MGP_C3HHeJ_T0096245.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71418180 71443188 - MGP_C3HHeJ_P0096245 Mpp1 protein_coding protein_coding MGP_C3HHeJ_T0096246.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71419095 71443016 - MGP_C3HHeJ_P0096246 Mpp1 protein_coding protein_coding MGP_C3HHeJ_T0096247.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71420163 71443121 - MGP_C3HHeJ_P0096247 Mpp1 protein_coding protein_coding MGP_C3HHeJ_T0096248.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71420800 71443026 - MGP_C3HHeJ_P0096248 Mpp1 protein_coding protein_coding MGP_C3HHeJ_T0096249.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71422012 71443026 - Mpp1 protein_coding processed_transcript MGP_C3HHeJ_T0096250.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71424282 71426295 - Mpp1 protein_coding retained_intron MGP_C3HHeJ_T0096251.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71424508 71443026 - MGP_C3HHeJ_P0096251 Mpp1 protein_coding protein_coding MGP_C3HHeJ_T0096252.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71429918 71443026 - MGP_C3HHeJ_P0096252 Mpp1 protein_coding protein_coding MGP_C3HHeJ_T0096253.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71435176 71443158 - Mpp1 protein_coding retained_intron MGP_C3HHeJ_T0096254.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71437999 71443125 - MGP_C3HHeJ_P0096254 Mpp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0016428.1 MGP_C3HHeJ_G0014532.1 mouse_genomes_project X 110137281 110138216 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0094987.1 MGP_C3HHeJ_G0035183.1 mouse_genomes_project X 659954 671055 + MGP_C3HHeJ_P0094987 Nudt11 protein_coding protein_coding MGP_C3HHeJ_T0095482.1 MGP_C3HHeJ_G0035336.1 mouse_genomes_project X 33501142 33557471 - MGP_C3HHeJ_P0095482 Tmem255a protein_coding protein_coding MGP_C3HHeJ_T0095483.1 MGP_C3HHeJ_G0035336.1 mouse_genomes_project X 33501875 33557481 - Tmem255a protein_coding retained_intron MGP_C3HHeJ_T0095484.1 MGP_C3HHeJ_G0035336.1 mouse_genomes_project X 33501875 33557481 - MGP_C3HHeJ_P0095484 Tmem255a protein_coding protein_coding MGP_C3HHeJ_T0095485.1 MGP_C3HHeJ_G0035336.1 mouse_genomes_project X 33501875 33557481 - MGP_C3HHeJ_P0095485 Tmem255a protein_coding protein_coding MGP_C3HHeJ_T0095486.1 MGP_C3HHeJ_G0035336.1 mouse_genomes_project X 33520399 33557443 - Tmem255a protein_coding processed_transcript MGP_C3HHeJ_T0095303.1 MGP_C3HHeJ_G0035272.1 mouse_genomes_project X 13172229 13301195 + MGP_C3HHeJ_P0095303 Kdm6a protein_coding protein_coding MGP_C3HHeJ_T0095304.1 MGP_C3HHeJ_G0035272.1 mouse_genomes_project X 13172229 13301195 + MGP_C3HHeJ_P0095304 Kdm6a protein_coding protein_coding MGP_C3HHeJ_T0095305.1 MGP_C3HHeJ_G0035272.1 mouse_genomes_project X 13172302 13279447 + Kdm6a protein_coding retained_intron MGP_C3HHeJ_T0095306.1 MGP_C3HHeJ_G0035272.1 mouse_genomes_project X 13172660 13299934 + MGP_C3HHeJ_P0095306 Kdm6a protein_coding unknown_likely_coding MGP_C3HHeJ_T0095307.1 MGP_C3HHeJ_G0035272.1 mouse_genomes_project X 13295798 13299539 + Kdm6a protein_coding retained_intron MGP_C3HHeJ_T0009310.1 MGP_C3HHeJ_G0007467.1 mouse_genomes_project X 89889907 89890599 + 1700003E24Rik lincRNA lincRNA MGP_C3HHeJ_T0016421.1 MGP_C3HHeJ_G0014525.1 mouse_genomes_project X 109657840 109662576 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018410.1 MGP_C3HHeJ_G0015541.1 mouse_genomes_project X 70044434 70046814 + Gm14817 processed_transcript processed_transcript MGP_C3HHeJ_T0098230.1 MGP_C3HHeJ_G0036442.1 mouse_genomes_project X 149945569 149945676 + n-R5s14 rRNA rRNA MGP_C3HHeJ_T0095802.1 MGP_C3HHeJ_G0035439.1 mouse_genomes_project X 61195742 61197113 + MGP_C3HHeJ_P0095802 Ctag2 protein_coding protein_coding MGP_C3HHeJ_T0016432.1 MGP_C3HHeJ_G0014536.1 mouse_genomes_project X 111210769 111212122 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011113.1 MGP_C3HHeJ_G0009246.1 mouse_genomes_project X 113290101 113290189 + Gm24683 miRNA miRNA MGP_C3HHeJ_T0016489.1 MGP_C3HHeJ_G0014593.1 mouse_genomes_project X 127715195 127715637 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016605.1 MGP_C3HHeJ_G0014709.1 mouse_genomes_project X 149112133 149112518 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016243.1 MGP_C3HHeJ_G0014347.1 mouse_genomes_project X 76384339 76385041 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016527.1 MGP_C3HHeJ_G0014631.1 mouse_genomes_project X 134605329 134605916 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016427.1 MGP_C3HHeJ_G0014531.1 mouse_genomes_project X 110128756 110128964 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101063.1 MGP_C3HHeJ_G0039257.1 mouse_genomes_project X 153354343 153354475 + Gm25429 snoRNA snoRNA MGP_C3HHeJ_T0016643.1 MGP_C3HHeJ_G0014747.1 mouse_genomes_project X 155919145 155919366 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096417.1 MGP_C3HHeJ_G0035591.1 mouse_genomes_project X 91314077 91320750 - MGP_C3HHeJ_P0096417 Maged1 protein_coding protein_coding MGP_C3HHeJ_T0096418.1 MGP_C3HHeJ_G0035591.1 mouse_genomes_project X 91314079 91316439 - Maged1 protein_coding retained_intron MGP_C3HHeJ_T0096419.1 MGP_C3HHeJ_G0035591.1 mouse_genomes_project X 91314079 91320597 - Maged1 protein_coding retained_intron MGP_C3HHeJ_T0096420.1 MGP_C3HHeJ_G0035591.1 mouse_genomes_project X 91314079 91316168 - Maged1 protein_coding retained_intron MGP_C3HHeJ_T0096421.1 MGP_C3HHeJ_G0035591.1 mouse_genomes_project X 91314685 91316488 - Maged1 protein_coding retained_intron MGP_C3HHeJ_T0096422.1 MGP_C3HHeJ_G0035591.1 mouse_genomes_project X 91316278 91317430 - Maged1 protein_coding retained_intron MGP_C3HHeJ_T0096423.1 MGP_C3HHeJ_G0035591.1 mouse_genomes_project X 91319097 91320610 - Maged1 protein_coding retained_intron MGP_C3HHeJ_T0095253.1 MGP_C3HHeJ_G0035256.1 mouse_genomes_project X 7602213 7691588 - MGP_C3HHeJ_P0095253 Med14 protein_coding protein_coding MGP_C3HHeJ_T0095254.1 MGP_C3HHeJ_G0035256.1 mouse_genomes_project X 7605879 7643143 - MGP_C3HHeJ_P0095254 Med14 protein_coding protein_coding MGP_C3HHeJ_T0095255.1 MGP_C3HHeJ_G0035256.1 mouse_genomes_project X 7606593 7691588 - Med14 protein_coding retained_intron MGP_C3HHeJ_T0095256.1 MGP_C3HHeJ_G0035256.1 mouse_genomes_project X 7633405 7640960 - Med14 protein_coding retained_intron MGP_C3HHeJ_T0095257.1 MGP_C3HHeJ_G0035256.1 mouse_genomes_project X 7636161 7691588 - MGP_C3HHeJ_P0095257 Med14 protein_coding protein_coding MGP_C3HHeJ_T0016038.1 MGP_C3HHeJ_G0014142.1 mouse_genomes_project X 16269321 16270118 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016597.1 MGP_C3HHeJ_G0014701.1 mouse_genomes_project X 148289735 148289939 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096748.1 MGP_C3HHeJ_G0035678.1 mouse_genomes_project X 103247539 103344974 + MGP_C3HHeJ_P0096748 Atp7a protein_coding protein_coding MGP_C3HHeJ_T0096749.1 MGP_C3HHeJ_G0035678.1 mouse_genomes_project X 103247585 103344980 + MGP_C3HHeJ_P0096749 Atp7a protein_coding protein_coding MGP_C3HHeJ_T0096750.1 MGP_C3HHeJ_G0035678.1 mouse_genomes_project X 103327642 103338576 + Atp7a protein_coding processed_transcript MGP_C3HHeJ_T0096751.1 MGP_C3HHeJ_G0035678.1 mouse_genomes_project X 103335504 103342459 + Atp7a protein_coding retained_intron MGP_C3HHeJ_T0095233.1 MGP_C3HHeJ_G0035250.1 mouse_genomes_project X 5130214 5199796 + MGP_C3HHeJ_P0095233 Otc protein_coding protein_coding MGP_C3HHeJ_T0095234.1 MGP_C3HHeJ_G0035250.1 mouse_genomes_project X 5130276 5195270 + MGP_C3HHeJ_P0095234 Otc protein_coding protein_coding MGP_C3HHeJ_T0016119.1 MGP_C3HHeJ_G0014223.1 mouse_genomes_project X 49173468 49174028 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097061.1 MGP_C3HHeJ_G0035789.1 mouse_genomes_project X 134496074 134499859 + MGP_C3HHeJ_P0097061 Zcchc18 protein_coding protein_coding MGP_C3HHeJ_T0097062.1 MGP_C3HHeJ_G0035789.1 mouse_genomes_project X 134496078 134499597 + MGP_C3HHeJ_P0097062 Zcchc18 protein_coding protein_coding MGP_C3HHeJ_T0097063.1 MGP_C3HHeJ_G0035789.1 mouse_genomes_project X 134496217 134501953 + MGP_C3HHeJ_P0097063 Zcchc18 protein_coding protein_coding MGP_C3HHeJ_T0096848.1 MGP_C3HHeJ_G0035712.1 mouse_genomes_project X 109821271 109891664 - MGP_C3HHeJ_P0096848 Pof1b protein_coding protein_coding MGP_C3HHeJ_T0016293.1 MGP_C3HHeJ_G0014397.1 mouse_genomes_project X 88540304 88540499 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095887.1 MGP_C3HHeJ_G0035463.1 mouse_genomes_project X 68184237 68202953 + MGP_C3HHeJ_P0095887 Cnga2 protein_coding protein_coding MGP_C3HHeJ_T0095888.1 MGP_C3HHeJ_G0035463.1 mouse_genomes_project X 68184243 68194318 + Cnga2 protein_coding processed_transcript MGP_C3HHeJ_T0096884.1 MGP_C3HHeJ_G0035727.1 mouse_genomes_project X 124180830 124204857 + MGP_C3HHeJ_P0096884 Gm382 protein_coding protein_coding MGP_C3HHeJ_T0016158.1 MGP_C3HHeJ_G0014262.1 mouse_genomes_project X 57972481 57973471 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095612.1 MGP_C3HHeJ_G0035368.1 mouse_genomes_project X 43999788 44049678 - MGP_C3HHeJ_P0095612 Zfp280c protein_coding protein_coding MGP_C3HHeJ_T0095613.1 MGP_C3HHeJ_G0035368.1 mouse_genomes_project X 43999788 44052203 - MGP_C3HHeJ_P0095613 Zfp280c protein_coding protein_coding MGP_C3HHeJ_T0095614.1 MGP_C3HHeJ_G0035368.1 mouse_genomes_project X 43999789 44052124 - MGP_C3HHeJ_P0095614 Zfp280c protein_coding protein_coding MGP_C3HHeJ_T0095615.1 MGP_C3HHeJ_G0035368.1 mouse_genomes_project X 43999790 44049306 - MGP_C3HHeJ_P0095615 Zfp280c protein_coding protein_coding MGP_C3HHeJ_T0095616.1 MGP_C3HHeJ_G0035368.1 mouse_genomes_project X 44000921 44001868 - Zfp280c protein_coding retained_intron MGP_C3HHeJ_T0095617.1 MGP_C3HHeJ_G0035368.1 mouse_genomes_project X 44035966 44052142 - Zfp280c protein_coding processed_transcript MGP_C3HHeJ_T0095618.1 MGP_C3HHeJ_G0035368.1 mouse_genomes_project X 44043639 44052255 - Zfp280c protein_coding processed_transcript MGP_C3HHeJ_T0095191.1 MGP_C3HHeJ_G0035228.1 mouse_genomes_project X 2987049 2988903 + MGP_C3HHeJ_P0095191 Slc38a5 protein_coding protein_coding MGP_C3HHeJ_T0095192.1 MGP_C3HHeJ_G0035228.1 mouse_genomes_project X 2987067 2996149 + MGP_C3HHeJ_P0095192 Slc38a5 protein_coding protein_coding MGP_C3HHeJ_T0095193.1 MGP_C3HHeJ_G0035228.1 mouse_genomes_project X 2987332 2996149 + MGP_C3HHeJ_P0095193 Slc38a5 protein_coding protein_coding MGP_C3HHeJ_T0095194.1 MGP_C3HHeJ_G0035228.1 mouse_genomes_project X 2987661 2996144 + MGP_C3HHeJ_P0095194 Slc38a5 protein_coding protein_coding MGP_C3HHeJ_T0016300.1 MGP_C3HHeJ_G0014404.1 mouse_genomes_project X 90261936 90264673 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099770.1 MGP_C3HHeJ_G0037964.1 mouse_genomes_project X 62796650 62796789 + Gm23000 snRNA snRNA MGP_C3HHeJ_T0096481.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95391304 95738755 - MGP_C3HHeJ_P0096481 Ophn1 protein_coding protein_coding MGP_C3HHeJ_T0096482.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95395155 95738551 - MGP_C3HHeJ_P0096482 Ophn1 protein_coding protein_coding MGP_C3HHeJ_T0096483.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95395161 95415382 - MGP_C3HHeJ_P0096483 Ophn1 protein_coding protein_coding MGP_C3HHeJ_T0096484.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95400472 95415328 - Ophn1 protein_coding processed_transcript MGP_C3HHeJ_T0096485.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95554465 95738795 - Ophn1 protein_coding retained_intron MGP_C3HHeJ_T0096486.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95554693 95738755 - Ophn1 protein_coding retained_intron MGP_C3HHeJ_T0096487.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95574768 95738755 - MGP_C3HHeJ_P0096487 Ophn1 protein_coding protein_coding MGP_C3HHeJ_T0096488.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95646471 95738379 - Ophn1 protein_coding retained_intron MGP_C3HHeJ_T0096489.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95721259 95738154 - Ophn1 protein_coding processed_transcript MGP_C3HHeJ_T0096490.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95734831 95738395 - Ophn1 protein_coding retained_intron MGP_C3HHeJ_T0098304.1 MGP_C3HHeJ_G0036516.1 mouse_genomes_project X 90306849 90306987 - Gm23557 scaRNA scaRNA MGP_C3HHeJ_T0005521.1 MGP_C3HHeJ_G0004645.1 mouse_genomes_project X 72637115 72637695 - Gm14707 antisense antisense MGP_C3HHeJ_T0016229.1 MGP_C3HHeJ_G0014333.1 mouse_genomes_project X 74031820 74033689 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095656.1 MGP_C3HHeJ_G0035382.1 mouse_genomes_project X 46314369 46362726 - MGP_C3HHeJ_P0095656 Frmd7 protein_coding protein_coding MGP_C3HHeJ_T0095657.1 MGP_C3HHeJ_G0035382.1 mouse_genomes_project X 46314369 46362726 - MGP_C3HHeJ_P0095657 Frmd7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095169.1 MGP_C3HHeJ_G0035224.1 mouse_genomes_project X 2858995 2882221 - MGP_C3HHeJ_P0095169 Tbc1d25 protein_coding protein_coding MGP_C3HHeJ_T0095170.1 MGP_C3HHeJ_G0035224.1 mouse_genomes_project X 2858995 2882221 - MGP_C3HHeJ_P0095170 Tbc1d25 protein_coding protein_coding MGP_C3HHeJ_T0095171.1 MGP_C3HHeJ_G0035224.1 mouse_genomes_project X 2859006 2881998 - Tbc1d25 protein_coding retained_intron MGP_C3HHeJ_T0095172.1 MGP_C3HHeJ_G0035224.1 mouse_genomes_project X 2859228 2881910 - MGP_C3HHeJ_P0095172 Tbc1d25 protein_coding protein_coding MGP_C3HHeJ_T0095504.1 MGP_C3HHeJ_G0035341.1 mouse_genomes_project X 33968966 33973269 - MGP_C3HHeJ_P0095504 C1galt1c1 protein_coding protein_coding MGP_C3HHeJ_T0095635.1 MGP_C3HHeJ_G0035374.1 mouse_genomes_project X 44913081 44945621 + MGP_C3HHeJ_P0095635 Arhgap36 protein_coding protein_coding MGP_C3HHeJ_T0095636.1 MGP_C3HHeJ_G0035374.1 mouse_genomes_project X 44919594 44949356 + MGP_C3HHeJ_P0095636 Arhgap36 protein_coding protein_coding MGP_C3HHeJ_T0095637.1 MGP_C3HHeJ_G0035374.1 mouse_genomes_project X 44919721 44949354 + MGP_C3HHeJ_P0095637 Arhgap36 protein_coding protein_coding MGP_C3HHeJ_T0095638.1 MGP_C3HHeJ_G0035374.1 mouse_genomes_project X 44934174 44949354 + MGP_C3HHeJ_P0095638 Arhgap36 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095639.1 MGP_C3HHeJ_G0035374.1 mouse_genomes_project X 44934741 44944362 + Arhgap36 protein_coding processed_transcript MGP_C3HHeJ_T0095640.1 MGP_C3HHeJ_G0035374.1 mouse_genomes_project X 44942988 44944567 + Arhgap36 protein_coding processed_transcript MGP_C3HHeJ_T0095652.1 MGP_C3HHeJ_G0035381.1 mouse_genomes_project X 46253779 46312287 + MGP_C3HHeJ_P0095652 Stk26 protein_coding protein_coding MGP_C3HHeJ_T0095653.1 MGP_C3HHeJ_G0035381.1 mouse_genomes_project X 46254173 46298469 + Stk26 protein_coding retained_intron MGP_C3HHeJ_T0095654.1 MGP_C3HHeJ_G0035381.1 mouse_genomes_project X 46254173 46312287 + MGP_C3HHeJ_P0095654 Stk26 protein_coding protein_coding MGP_C3HHeJ_T0095655.1 MGP_C3HHeJ_G0035381.1 mouse_genomes_project X 46296782 46310243 + Stk26 protein_coding retained_intron MGP_C3HHeJ_T0094988.1 MGP_C3HHeJ_G0035184.1 mouse_genomes_project X 697749 699950 - MGP_C3HHeJ_P0094988 AU022751 protein_coding protein_coding MGP_C3HHeJ_T0094989.1 MGP_C3HHeJ_G0035184.1 mouse_genomes_project X 697749 699950 - MGP_C3HHeJ_P0094989 AU022751 protein_coding protein_coding MGP_C3HHeJ_T0011129.1 MGP_C3HHeJ_G0009262.1 mouse_genomes_project X 144826239 144826377 + Gm24627 miRNA miRNA MGP_C3HHeJ_T0097527.1 MGP_C3HHeJ_G0035902.1 mouse_genomes_project X 159097743 159130786 + MGP_C3HHeJ_P0097527 Rs1 protein_coding protein_coding MGP_C3HHeJ_T0097528.1 MGP_C3HHeJ_G0035902.1 mouse_genomes_project X 159097910 159125976 + MGP_C3HHeJ_P0097528 Rs1 protein_coding protein_coding MGP_C3HHeJ_T0097532.1 MGP_C3HHeJ_G0035902.1 mouse_genomes_project X 159122623 159126473 + Rs1 protein_coding processed_transcript MGP_C3HHeJ_T0095292.1 MGP_C3HHeJ_G0035266.1 mouse_genomes_project X 11612075 11676206 + MGP_C3HHeJ_P0095292 Maoa protein_coding protein_coding MGP_C3HHeJ_T0016681.1 MGP_C3HHeJ_G0014785.1 mouse_genomes_project X 164464779 164465167 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016493.1 MGP_C3HHeJ_G0014597.1 mouse_genomes_project X 129031477 129033617 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018445.1 MGP_C3HHeJ_G0015551.1 mouse_genomes_project X 134191696 134207680 + BC065397 processed_transcript processed_transcript MGP_C3HHeJ_T0018446.1 MGP_C3HHeJ_G0015551.1 mouse_genomes_project X 134191718 134209379 + BC065397 processed_transcript processed_transcript MGP_C3HHeJ_T0018447.1 MGP_C3HHeJ_G0015551.1 mouse_genomes_project X 134191730 134194460 + BC065397 processed_transcript processed_transcript MGP_C3HHeJ_T0018448.1 MGP_C3HHeJ_G0015551.1 mouse_genomes_project X 134191760 134207658 + BC065397 processed_transcript processed_transcript MGP_C3HHeJ_T0018449.1 MGP_C3HHeJ_G0015551.1 mouse_genomes_project X 134192866 134251037 + BC065397 processed_transcript processed_transcript MGP_C3HHeJ_T0018450.1 MGP_C3HHeJ_G0015551.1 mouse_genomes_project X 134193285 134207695 + BC065397 processed_transcript processed_transcript MGP_C3HHeJ_T0018451.1 MGP_C3HHeJ_G0015551.1 mouse_genomes_project X 134215110 134251046 + BC065397 processed_transcript processed_transcript MGP_C3HHeJ_T0095950.1 MGP_C3HHeJ_G0035487.1 mouse_genomes_project X 69930183 69961140 - MGP_C3HHeJ_P0095950 Bcap31 protein_coding protein_coding MGP_C3HHeJ_T0096474.1 MGP_C3HHeJ_G0035605.1 mouse_genomes_project X 93835859 93836648 - MGP_C3HHeJ_P0096474 1700084M14Rik protein_coding protein_coding MGP_C3HHeJ_T0102361.1 MGP_C3HHeJ_G0040324.1 mouse_genomes_project X 88274778 88275697 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101305.1 MGP_C3HHeJ_G0039397.1 mouse_genomes_project X 100900917 100901666 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101306.1 MGP_C3HHeJ_G0039397.1 mouse_genomes_project X 100901104 100901537 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0016362.1 MGP_C3HHeJ_G0014466.1 mouse_genomes_project X 100422310 100422765 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016217.1 MGP_C3HHeJ_G0014321.1 mouse_genomes_project X 71824224 71824516 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005533.1 MGP_C3HHeJ_G0004655.1 mouse_genomes_project X 142115565 142136021 + antisense antisense MGP_C3HHeJ_T0005534.1 MGP_C3HHeJ_G0004655.1 mouse_genomes_project X 142130136 142136018 + antisense antisense MGP_C3HHeJ_T0016607.1 MGP_C3HHeJ_G0014711.1 mouse_genomes_project X 149604303 149605218 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016431.1 MGP_C3HHeJ_G0014535.1 mouse_genomes_project X 111200549 111202117 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005502.1 MGP_C3HHeJ_G0004628.1 mouse_genomes_project X 5607789 5609027 - Gm14493 antisense antisense MGP_C3HHeJ_T0096358.1 MGP_C3HHeJ_G0035567.1 mouse_genomes_project X 82433423 82436536 + MGP_C3HHeJ_P0096358 Samt3 protein_coding protein_coding MGP_C3HHeJ_T0095085.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2457274 2492769 + MGP_C3HHeJ_P0095085 Gripap1 protein_coding protein_coding MGP_C3HHeJ_T0095086.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2457503 2484685 + MGP_C3HHeJ_P0095086 Gripap1 protein_coding protein_coding MGP_C3HHeJ_T0095087.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2457504 2492765 + MGP_C3HHeJ_P0095087 Gripap1 protein_coding protein_coding MGP_C3HHeJ_T0095088.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2457515 2462054 + Gripap1 protein_coding retained_intron MGP_C3HHeJ_T0095089.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2457517 2492765 + MGP_C3HHeJ_P0095089 Gripap1 protein_coding protein_coding MGP_C3HHeJ_T0095090.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2457521 2484685 + MGP_C3HHeJ_P0095090 Gripap1 protein_coding protein_coding MGP_C3HHeJ_T0095091.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2457527 2492158 + Gripap1 protein_coding processed_transcript MGP_C3HHeJ_T0095092.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2465906 2483073 + Gripap1 protein_coding retained_intron MGP_C3HHeJ_T0095093.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2482511 2483060 + Gripap1 protein_coding processed_transcript MGP_C3HHeJ_T0095094.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2491120 2492765 + Gripap1 protein_coding retained_intron MGP_C3HHeJ_T0016608.1 MGP_C3HHeJ_G0014712.1 mouse_genomes_project X 149706909 149707086 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096830.1 MGP_C3HHeJ_G0035705.1 mouse_genomes_project X 108756865 108860329 - MGP_C3HHeJ_P0096830 Hdx protein_coding protein_coding MGP_C3HHeJ_T0095832.1 MGP_C3HHeJ_G0035450.1 mouse_genomes_project X 66445037 66448577 + MGP_C3HHeJ_P0095832 1110012L19Rik protein_coding protein_coding MGP_C3HHeJ_T0016028.1 MGP_C3HHeJ_G0014132.1 mouse_genomes_project X 14815022 14815355 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095403.1 MGP_C3HHeJ_G0035300.1 mouse_genomes_project X 18847207 18963268 + MGP_C3HHeJ_P0095403 protein_coding protein_coding MGP_C3HHeJ_T0095404.1 MGP_C3HHeJ_G0035300.1 mouse_genomes_project X 18847233 18909457 + protein_coding retained_intron MGP_C3HHeJ_T0095405.1 MGP_C3HHeJ_G0035300.1 mouse_genomes_project X 18847252 18963303 + MGP_C3HHeJ_P0095405 protein_coding protein_coding MGP_C3HHeJ_T0095406.1 MGP_C3HHeJ_G0035300.1 mouse_genomes_project X 18847315 18914894 + MGP_C3HHeJ_P0095406 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095407.1 MGP_C3HHeJ_G0035300.1 mouse_genomes_project X 18933835 18938549 + protein_coding retained_intron MGP_C3HHeJ_T0018431.1 MGP_C3HHeJ_G0015546.1 mouse_genomes_project X 106139546 106196135 + processed_transcript processed_transcript MGP_C3HHeJ_T0018432.1 MGP_C3HHeJ_G0015546.1 mouse_genomes_project X 106139570 106195929 + processed_transcript processed_transcript MGP_C3HHeJ_T0018433.1 MGP_C3HHeJ_G0015546.1 mouse_genomes_project X 106139646 106274722 + processed_transcript processed_transcript MGP_C3HHeJ_T0018434.1 MGP_C3HHeJ_G0015546.1 mouse_genomes_project X 106139725 106195922 + processed_transcript processed_transcript MGP_C3HHeJ_T0018435.1 MGP_C3HHeJ_G0015546.1 mouse_genomes_project X 106139732 106146226 + processed_transcript retained_intron MGP_C3HHeJ_T0018436.1 MGP_C3HHeJ_G0015546.1 mouse_genomes_project X 106139747 106184104 + processed_transcript processed_transcript MGP_C3HHeJ_T0018437.1 MGP_C3HHeJ_G0015546.1 mouse_genomes_project X 106139763 106184308 + processed_transcript processed_transcript MGP_C3HHeJ_T0018438.1 MGP_C3HHeJ_G0015546.1 mouse_genomes_project X 106210402 106275037 + processed_transcript processed_transcript MGP_C3HHeJ_T0016544.1 MGP_C3HHeJ_G0014648.1 mouse_genomes_project X 137635204 137636185 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016190.1 MGP_C3HHeJ_G0014294.1 mouse_genomes_project X 66496783 66497731 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097413.1 MGP_C3HHeJ_G0035872.1 mouse_genomes_project X 151779505 151790747 - MGP_C3HHeJ_P0097413 Kctd12b protein_coding protein_coding MGP_C3HHeJ_T0097414.1 MGP_C3HHeJ_G0035872.1 mouse_genomes_project X 151779505 151790616 - MGP_C3HHeJ_P0097414 Kctd12b protein_coding protein_coding MGP_C3HHeJ_T0016004.1 MGP_C3HHeJ_G0014108.1 mouse_genomes_project X 8203077 8204304 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016100.1 MGP_C3HHeJ_G0014204.1 mouse_genomes_project X 44617706 44618055 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002444.1 MGP_C3HHeJ_G0002362.1 mouse_genomes_project X 125528538 125530402 + TEC TEC MGP_C3HHeJ_T0016506.1 MGP_C3HHeJ_G0014610.1 mouse_genomes_project X 132111617 132112480 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097193.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141150434 141435504 + MGP_C3HHeJ_P0097193 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0097194.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141150541 141402712 + MGP_C3HHeJ_P0097194 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0097195.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141300042 141435504 + MGP_C3HHeJ_P0097195 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0097196.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141300125 141332011 + MGP_C3HHeJ_P0097196 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0097197.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141300143 141354796 + MGP_C3HHeJ_P0097197 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0097198.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141300278 141373201 + MGP_C3HHeJ_P0097198 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0097199.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141300331 141435504 + MGP_C3HHeJ_P0097199 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0097200.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141301497 141435504 + MGP_C3HHeJ_P0097200 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0097201.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141301497 141435504 + MGP_C3HHeJ_P0097201 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0097202.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141331912 141435508 + MGP_C3HHeJ_P0097202 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0102378.1 MGP_C3HHeJ_G0040341.1 mouse_genomes_project X 158619373 158619666 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095761.1 MGP_C3HHeJ_G0035421.1 mouse_genomes_project X 53276511 53352124 + MGP_C3HHeJ_P0095761 Gm364 protein_coding protein_coding MGP_C3HHeJ_T0096384.1 MGP_C3HHeJ_G0035583.1 mouse_genomes_project X 90391101 90481786 + MGP_C3HHeJ_P0096384 Pcyt1b protein_coding protein_coding MGP_C3HHeJ_T0096385.1 MGP_C3HHeJ_G0035583.1 mouse_genomes_project X 90413153 90481786 + MGP_C3HHeJ_P0096385 Pcyt1b protein_coding protein_coding MGP_C3HHeJ_T0096386.1 MGP_C3HHeJ_G0035583.1 mouse_genomes_project X 90463393 90466687 + Pcyt1b protein_coding processed_transcript MGP_C3HHeJ_T0016379.1 MGP_C3HHeJ_G0014483.1 mouse_genomes_project X 101934042 101934416 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099773.1 MGP_C3HHeJ_G0037967.1 mouse_genomes_project X 71920644 71920808 - Gm25421 snRNA snRNA MGP_C3HHeJ_T0016654.1 MGP_C3HHeJ_G0014758.1 mouse_genomes_project X 157891002 157891565 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096794.1 MGP_C3HHeJ_G0035692.1 mouse_genomes_project X 105091824 105127108 - MGP_C3HHeJ_P0096794 2610002M06Rik protein_coding protein_coding MGP_C3HHeJ_T0096795.1 MGP_C3HHeJ_G0035692.1 mouse_genomes_project X 105096910 105104923 - 2610002M06Rik protein_coding retained_intron MGP_C3HHeJ_T0016638.1 MGP_C3HHeJ_G0014742.1 mouse_genomes_project X 155857570 155857705 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016472.1 MGP_C3HHeJ_G0014576.1 mouse_genomes_project X 119322511 119324068 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096415.1 MGP_C3HHeJ_G0035590.1 mouse_genomes_project X 91141957 91187232 + MGP_C3HHeJ_P0096415 Apoo protein_coding protein_coding MGP_C3HHeJ_T0096416.1 MGP_C3HHeJ_G0035590.1 mouse_genomes_project X 91141957 91192610 + MGP_C3HHeJ_P0096416 Apoo protein_coding protein_coding MGP_C3HHeJ_T0095250.1 MGP_C3HHeJ_G0035254.1 mouse_genomes_project X 7513882 7522663 + Atp6ap2 protein_coding retained_intron MGP_C3HHeJ_T0095251.1 MGP_C3HHeJ_G0035254.1 mouse_genomes_project X 7513882 7541535 + MGP_C3HHeJ_P0095251 Atp6ap2 protein_coding protein_coding MGP_C3HHeJ_T0011100.1 MGP_C3HHeJ_G0009233.1 mouse_genomes_project X 95570036 95570134 - Gm27554 miRNA miRNA MGP_C3HHeJ_T0016442.1 MGP_C3HHeJ_G0014546.1 mouse_genomes_project X 112724122 112725739 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011025.1 MGP_C3HHeJ_G0009158.1 mouse_genomes_project X 1875564 1875673 - Mir501 miRNA miRNA MGP_C3HHeJ_T0097365.1 MGP_C3HHeJ_G0035857.1 mouse_genomes_project X 149977772 150003956 + MGP_C3HHeJ_P0097365 Smc1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097366.1 MGP_C3HHeJ_G0035857.1 mouse_genomes_project X 149977772 150032335 + MGP_C3HHeJ_P0097366 Smc1a protein_coding protein_coding MGP_C3HHeJ_T0097367.1 MGP_C3HHeJ_G0035857.1 mouse_genomes_project X 150004190 150005802 + Smc1a protein_coding retained_intron MGP_C3HHeJ_T0097368.1 MGP_C3HHeJ_G0035857.1 mouse_genomes_project X 150016282 150017590 + Smc1a protein_coding retained_intron MGP_C3HHeJ_T0097369.1 MGP_C3HHeJ_G0035857.1 mouse_genomes_project X 150028107 150029149 + Smc1a protein_coding retained_intron MGP_C3HHeJ_T0097370.1 MGP_C3HHeJ_G0035857.1 mouse_genomes_project X 150028715 150029421 + Smc1a protein_coding retained_intron MGP_C3HHeJ_T0011055.1 MGP_C3HHeJ_G0009188.1 mouse_genomes_project X 48542570 48542661 - Mir450-1 miRNA miRNA MGP_C3HHeJ_T0102339.1 MGP_C3HHeJ_G0040302.1 mouse_genomes_project X 33200813 33201823 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011107.1 MGP_C3HHeJ_G0009240.1 mouse_genomes_project X 101231056 101231147 + Gm24993 miRNA miRNA MGP_C3HHeJ_T0099789.1 MGP_C3HHeJ_G0037983.1 mouse_genomes_project X 106310649 106310816 - Gm23322 snRNA snRNA MGP_C3HHeJ_T0095716.1 MGP_C3HHeJ_G0035411.1 mouse_genomes_project X 52443999 52472738 + MGP_C3HHeJ_P0095716 Slc9a6 protein_coding protein_coding MGP_C3HHeJ_T0095717.1 MGP_C3HHeJ_G0035411.1 mouse_genomes_project X 52444017 52501629 + MGP_C3HHeJ_P0095717 Slc9a6 protein_coding protein_coding MGP_C3HHeJ_T0095718.1 MGP_C3HHeJ_G0035411.1 mouse_genomes_project X 52444059 52501240 + MGP_C3HHeJ_P0095718 Slc9a6 protein_coding protein_coding MGP_C3HHeJ_T0095719.1 MGP_C3HHeJ_G0035411.1 mouse_genomes_project X 52495641 52501228 + Slc9a6 protein_coding retained_intron MGP_C3HHeJ_T0016341.1 MGP_C3HHeJ_G0014445.1 mouse_genomes_project X 97041275 97041597 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016679.1 MGP_C3HHeJ_G0014783.1 mouse_genomes_project X 163301051 163301328 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016477.1 MGP_C3HHeJ_G0014581.1 mouse_genomes_project X 123761508 123762007 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099788.1 MGP_C3HHeJ_G0037982.1 mouse_genomes_project X 103932330 103932437 - Gm24491 snRNA snRNA MGP_C3HHeJ_T0099787.1 MGP_C3HHeJ_G0037981.1 mouse_genomes_project X 103867343 103867505 - Gm24622 snRNA snRNA MGP_C3HHeJ_T0095005.1 MGP_C3HHeJ_G0035192.1 mouse_genomes_project X 2014824 2019367 - MGP_C3HHeJ_P0095005 Usp27x protein_coding protein_coding MGP_C3HHeJ_T0095006.1 MGP_C3HHeJ_G0035192.1 mouse_genomes_project X 2016131 2019371 - MGP_C3HHeJ_P0095006 Usp27x protein_coding protein_coding MGP_C3HHeJ_T0096590.1 MGP_C3HHeJ_G0035635.1 mouse_genomes_project X 98205720 98232257 + MGP_C3HHeJ_P0096590 Nlgn3 protein_coding protein_coding MGP_C3HHeJ_T0096591.1 MGP_C3HHeJ_G0035635.1 mouse_genomes_project X 98205733 98225308 + MGP_C3HHeJ_P0096591 Nlgn3 protein_coding protein_coding MGP_C3HHeJ_T0096592.1 MGP_C3HHeJ_G0035635.1 mouse_genomes_project X 98205752 98232590 + MGP_C3HHeJ_P0096592 Nlgn3 protein_coding protein_coding MGP_C3HHeJ_T0096593.1 MGP_C3HHeJ_G0035635.1 mouse_genomes_project X 98207038 98208639 + Nlgn3 protein_coding processed_transcript MGP_C3HHeJ_T0096594.1 MGP_C3HHeJ_G0035635.1 mouse_genomes_project X 98221023 98224784 + Nlgn3 protein_coding processed_transcript MGP_C3HHeJ_T0101018.1 MGP_C3HHeJ_G0039212.1 mouse_genomes_project X 32017014 32017101 + Gm23613 snoRNA snoRNA MGP_C3HHeJ_T0016349.1 MGP_C3HHeJ_G0014453.1 mouse_genomes_project X 98746197 98747078 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096931.1 MGP_C3HHeJ_G0035742.1 mouse_genomes_project X 131538455 131549126 + MGP_C3HHeJ_P0096931 Tmem35a protein_coding protein_coding MGP_C3HHeJ_T0016694.1 MGP_C3HHeJ_G0014798.1 mouse_genomes_project X 167290815 167291215 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096932.1 MGP_C3HHeJ_G0035743.1 mouse_genomes_project X 131552034 131609346 + MGP_C3HHeJ_P0096932 Cenpi protein_coding protein_coding MGP_C3HHeJ_T0096933.1 MGP_C3HHeJ_G0035743.1 mouse_genomes_project X 131552105 131609343 + MGP_C3HHeJ_P0096933 Cenpi protein_coding protein_coding MGP_C3HHeJ_T0096934.1 MGP_C3HHeJ_G0035743.1 mouse_genomes_project X 131552149 131554201 + MGP_C3HHeJ_P0096934 Cenpi protein_coding protein_coding MGP_C3HHeJ_T0096935.1 MGP_C3HHeJ_G0035743.1 mouse_genomes_project X 131556428 131590267 + Cenpi protein_coding processed_transcript MGP_C3HHeJ_T0096936.1 MGP_C3HHeJ_G0035743.1 mouse_genomes_project X 131591936 131609344 + Cenpi protein_coding processed_transcript MGP_C3HHeJ_T0016422.1 MGP_C3HHeJ_G0014526.1 mouse_genomes_project X 109845265 109846173 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096638.1 MGP_C3HHeJ_G0035642.1 mouse_genomes_project X 98672924 98675659 - MGP_C3HHeJ_P0096638 Cxcr3 protein_coding protein_coding MGP_C3HHeJ_T0016037.1 MGP_C3HHeJ_G0014141.1 mouse_genomes_project X 16032156 16032355 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016088.1 MGP_C3HHeJ_G0014192.1 mouse_genomes_project X 40812349 40813504 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011032.1 MGP_C3HHeJ_G0009165.1 mouse_genomes_project X 10730860 10730924 + Gm22464 miRNA miRNA MGP_C3HHeJ_T0099814.1 MGP_C3HHeJ_G0038008.1 mouse_genomes_project X 161787989 161788109 - Gm26007 snRNA snRNA MGP_C3HHeJ_T0099790.1 MGP_C3HHeJ_G0037984.1 mouse_genomes_project X 106324840 106324947 - Gm25797 snRNA snRNA MGP_C3HHeJ_T0094991.1 MGP_C3HHeJ_G0035186.1 mouse_genomes_project X 941232 947847 - MGP_C3HHeJ_P0094991 Bmp15 protein_coding protein_coding MGP_C3HHeJ_T0096759.1 MGP_C3HHeJ_G0035682.1 mouse_genomes_project X 103688152 103764442 - MGP_C3HHeJ_P0096759 protein_coding protein_coding MGP_C3HHeJ_T0096760.1 MGP_C3HHeJ_G0035682.1 mouse_genomes_project X 103695844 103704180 - protein_coding retained_intron MGP_C3HHeJ_T0096761.1 MGP_C3HHeJ_G0035682.1 mouse_genomes_project X 103695851 103706060 - protein_coding processed_transcript MGP_C3HHeJ_T0096762.1 MGP_C3HHeJ_G0035682.1 mouse_genomes_project X 103705352 103707388 - protein_coding retained_intron MGP_C3HHeJ_T0096763.1 MGP_C3HHeJ_G0035682.1 mouse_genomes_project X 103724535 103764190 - MGP_C3HHeJ_P0096763 protein_coding protein_coding MGP_C3HHeJ_T0096764.1 MGP_C3HHeJ_G0035682.1 mouse_genomes_project X 103751867 103764065 - MGP_C3HHeJ_P0096764 protein_coding protein_coding MGP_C3HHeJ_T0096765.1 MGP_C3HHeJ_G0035682.1 mouse_genomes_project X 103751879 103764569 - MGP_C3HHeJ_P0096765 protein_coding protein_coding MGP_C3HHeJ_T0095899.1 MGP_C3HHeJ_G0035469.1 mouse_genomes_project X 69112148 69115300 - MGP_C3HHeJ_P0095899 Cetn2 protein_coding protein_coding MGP_C3HHeJ_T0095900.1 MGP_C3HHeJ_G0035469.1 mouse_genomes_project X 69112648 69116759 - MGP_C3HHeJ_P0095900 Cetn2 protein_coding protein_coding MGP_C3HHeJ_T0095901.1 MGP_C3HHeJ_G0035469.1 mouse_genomes_project X 69113352 69116727 - MGP_C3HHeJ_P0095901 Cetn2 protein_coding protein_coding MGP_C3HHeJ_T0096713.1 MGP_C3HHeJ_G0035674.1 mouse_genomes_project X 102973799 102984407 + MGP_C3HHeJ_P0096713 Fgf16 protein_coding protein_coding MGP_C3HHeJ_T0016071.1 MGP_C3HHeJ_G0014175.1 mouse_genomes_project X 36753984 36754240 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016230.1 MGP_C3HHeJ_G0014334.1 mouse_genomes_project X 74079462 74080231 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095016.1 MGP_C3HHeJ_G0035195.1 mouse_genomes_project X 2240884 2252451 - MGP_C3HHeJ_P0095016 Ccdc22 protein_coding protein_coding MGP_C3HHeJ_T0095017.1 MGP_C3HHeJ_G0035195.1 mouse_genomes_project X 2240885 2244355 - Ccdc22 protein_coding retained_intron MGP_C3HHeJ_T0016149.1 MGP_C3HHeJ_G0014253.1 mouse_genomes_project X 56848137 56848593 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101291.1 MGP_C3HHeJ_G0039389.1 mouse_genomes_project X 10144115 10144997 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101292.1 MGP_C3HHeJ_G0039389.1 mouse_genomes_project X 10144362 10144911 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0011676.1 MGP_C3HHeJ_G0009809.1 mouse_genomes_project X 106411827 106412119 - Gm26415 misc_RNA misc_RNA MGP_C3HHeJ_T0016278.1 MGP_C3HHeJ_G0014382.1 mouse_genomes_project X 85517902 85519068 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095394.1 MGP_C3HHeJ_G0035296.1 mouse_genomes_project X 16607999 16612620 + MGP_C3HHeJ_P0095394 Agtr2 protein_coding protein_coding MGP_C3HHeJ_T0095395.1 MGP_C3HHeJ_G0035296.1 mouse_genomes_project X 16608177 16609759 + Agtr2 protein_coding processed_transcript MGP_C3HHeJ_T0096781.1 MGP_C3HHeJ_G0035689.1 mouse_genomes_project X 104556089 104603340 + MGP_C3HHeJ_P0096781 Gpr174 protein_coding protein_coding MGP_C3HHeJ_T0096782.1 MGP_C3HHeJ_G0035689.1 mouse_genomes_project X 104556118 104603935 + MGP_C3HHeJ_P0096782 Gpr174 protein_coding protein_coding MGP_C3HHeJ_T0096783.1 MGP_C3HHeJ_G0035689.1 mouse_genomes_project X 104556175 104602475 + MGP_C3HHeJ_P0096783 Gpr174 protein_coding protein_coding MGP_C3HHeJ_T0096784.1 MGP_C3HHeJ_G0035689.1 mouse_genomes_project X 104556487 104602487 + MGP_C3HHeJ_P0096784 Gpr174 protein_coding protein_coding MGP_C3HHeJ_T0096785.1 MGP_C3HHeJ_G0035689.1 mouse_genomes_project X 104569973 104599490 + Gpr174 protein_coding processed_transcript MGP_C3HHeJ_T0096786.1 MGP_C3HHeJ_G0035689.1 mouse_genomes_project X 104586743 104599621 + Gpr174 protein_coding processed_transcript MGP_C3HHeJ_T0096787.1 MGP_C3HHeJ_G0035689.1 mouse_genomes_project X 104586743 104603937 + MGP_C3HHeJ_P0096787 Gpr174 protein_coding protein_coding MGP_C3HHeJ_T0016667.1 MGP_C3HHeJ_G0014771.1 mouse_genomes_project X 161083741 161084383 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097687.1 MGP_C3HHeJ_G0035946.1 mouse_genomes_project X 167310954 167833201 + MGP_C3HHeJ_P0097687 Arhgap6 protein_coding protein_coding MGP_C3HHeJ_T0097688.1 MGP_C3HHeJ_G0035946.1 mouse_genomes_project X 167552638 167783242 + Arhgap6 protein_coding retained_intron MGP_C3HHeJ_T0097689.1 MGP_C3HHeJ_G0035946.1 mouse_genomes_project X 167552638 167785860 + MGP_C3HHeJ_P0097689 Arhgap6 protein_coding protein_coding MGP_C3HHeJ_T0097690.1 MGP_C3HHeJ_G0035946.1 mouse_genomes_project X 167552638 167833201 + MGP_C3HHeJ_P0097690 Arhgap6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097691.1 MGP_C3HHeJ_G0035946.1 mouse_genomes_project X 167552638 167833201 + MGP_C3HHeJ_P0097691 Arhgap6 protein_coding protein_coding MGP_C3HHeJ_T0097692.1 MGP_C3HHeJ_G0035946.1 mouse_genomes_project X 167552638 167790803 + MGP_C3HHeJ_P0097692 Arhgap6 protein_coding protein_coding MGP_C3HHeJ_T0097693.1 MGP_C3HHeJ_G0035946.1 mouse_genomes_project X 167632633 167833201 + MGP_C3HHeJ_P0097693 Arhgap6 protein_coding protein_coding MGP_C3HHeJ_T0097699.1 MGP_C3HHeJ_G0035946.1 mouse_genomes_project X 167750101 167823877 + MGP_C3HHeJ_P0097699 Arhgap6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0018452.1 MGP_C3HHeJ_G0015552.1 mouse_genomes_project X 136742892 136873868 - Platr21 processed_transcript processed_transcript MGP_C3HHeJ_T0018453.1 MGP_C3HHeJ_G0015552.1 mouse_genomes_project X 136864587 136874840 - Platr21 processed_transcript processed_transcript MGP_C3HHeJ_T0097054.1 MGP_C3HHeJ_G0035786.1 mouse_genomes_project X 134394180 134395232 + MGP_C3HHeJ_P0097054 H2bfm protein_coding protein_coding MGP_C3HHeJ_T0096296.1 MGP_C3HHeJ_G0035549.1 mouse_genomes_project X 74083494 74120790 - MGP_C3HHeJ_P0096296 Prkx protein_coding protein_coding MGP_C3HHeJ_T0096297.1 MGP_C3HHeJ_G0035549.1 mouse_genomes_project X 74093540 74120502 - MGP_C3HHeJ_P0096297 Prkx protein_coding protein_coding MGP_C3HHeJ_T0016426.1 MGP_C3HHeJ_G0014530.1 mouse_genomes_project X 109997665 109998140 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011105.1 MGP_C3HHeJ_G0009238.1 mouse_genomes_project X 100690770 100690865 - Mir374b miRNA miRNA MGP_C3HHeJ_T0016348.1 MGP_C3HHeJ_G0014452.1 mouse_genomes_project X 98442101 98443362 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016388.1 MGP_C3HHeJ_G0014492.1 mouse_genomes_project X 102797968 102798206 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016596.1 MGP_C3HHeJ_G0014700.1 mouse_genomes_project X 144642968 144643987 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018374.1 MGP_C3HHeJ_G0015527.1 mouse_genomes_project X 2203530 2252315 - Gm36995 processed_transcript retained_intron MGP_C3HHeJ_T0095258.1 MGP_C3HHeJ_G0035257.1 mouse_genomes_project X 8014984 8069013 + MGP_C3HHeJ_P0095258 Usp9x protein_coding protein_coding MGP_C3HHeJ_T0095259.1 MGP_C3HHeJ_G0035257.1 mouse_genomes_project X 8015000 8067725 + Usp9x protein_coding retained_intron MGP_C3HHeJ_T0095260.1 MGP_C3HHeJ_G0035257.1 mouse_genomes_project X 8015000 8119409 + MGP_C3HHeJ_P0095260 Usp9x protein_coding protein_coding MGP_C3HHeJ_T0095261.1 MGP_C3HHeJ_G0035257.1 mouse_genomes_project X 8015669 8135755 + MGP_C3HHeJ_P0095261 Usp9x protein_coding unknown_likely_coding MGP_C3HHeJ_T0095262.1 MGP_C3HHeJ_G0035257.1 mouse_genomes_project X 8059247 8068797 + MGP_C3HHeJ_P0095262 Usp9x protein_coding protein_coding MGP_C3HHeJ_T0095263.1 MGP_C3HHeJ_G0035257.1 mouse_genomes_project X 8074584 8078095 + Usp9x protein_coding retained_intron MGP_C3HHeJ_T0095264.1 MGP_C3HHeJ_G0035257.1 mouse_genomes_project X 8074851 8079307 + Usp9x protein_coding retained_intron MGP_C3HHeJ_T0095265.1 MGP_C3HHeJ_G0035257.1 mouse_genomes_project X 8106938 8115979 + MGP_C3HHeJ_P0095265 Usp9x protein_coding protein_coding MGP_C3HHeJ_T0099777.1 MGP_C3HHeJ_G0037971.1 mouse_genomes_project X 89603217 89603322 + Gm25332 snRNA snRNA MGP_C3HHeJ_T0097136.1 MGP_C3HHeJ_G0035810.1 mouse_genomes_project X 137891775 137991543 + MGP_C3HHeJ_P0097136 Frmpd3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0097137.1 MGP_C3HHeJ_G0035810.1 mouse_genomes_project X 137921628 137948022 + MGP_C3HHeJ_P0097137 Frmpd3 protein_coding protein_coding MGP_C3HHeJ_T0097138.1 MGP_C3HHeJ_G0035810.1 mouse_genomes_project X 137936104 137948667 + MGP_C3HHeJ_P0097138 Frmpd3 protein_coding protein_coding MGP_C3HHeJ_T0101068.1 MGP_C3HHeJ_G0039262.1 mouse_genomes_project X 161137453 161137574 + Gm23786 snoRNA snoRNA MGP_C3HHeJ_T0016299.1 MGP_C3HHeJ_G0014403.1 mouse_genomes_project X 89318988 89320548 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095807.1 MGP_C3HHeJ_G0035443.1 mouse_genomes_project X 63723573 63734727 + MGP_C3HHeJ_P0095807 protein_coding protein_coding MGP_C3HHeJ_T0095584.1 MGP_C3HHeJ_G0035360.1 mouse_genomes_project X 43543651 43571888 + MGP_C3HHeJ_P0095584 Xpnpep2 protein_coding protein_coding MGP_C3HHeJ_T0095585.1 MGP_C3HHeJ_G0035360.1 mouse_genomes_project X 43543845 43568936 + MGP_C3HHeJ_P0095585 Xpnpep2 protein_coding protein_coding MGP_C3HHeJ_T0095586.1 MGP_C3HHeJ_G0035360.1 mouse_genomes_project X 43543847 43547082 + Xpnpep2 protein_coding processed_transcript MGP_C3HHeJ_T0095587.1 MGP_C3HHeJ_G0035360.1 mouse_genomes_project X 43543855 43571577 + MGP_C3HHeJ_P0095587 Xpnpep2 protein_coding protein_coding MGP_C3HHeJ_T0095588.1 MGP_C3HHeJ_G0035360.1 mouse_genomes_project X 43562662 43566072 + Xpnpep2 protein_coding processed_transcript MGP_C3HHeJ_T0095381.1 MGP_C3HHeJ_G0035291.1 mouse_genomes_project X 16150496 16184071 - MGP_C3HHeJ_P0095381 Zfp182 protein_coding protein_coding MGP_C3HHeJ_T0095382.1 MGP_C3HHeJ_G0035291.1 mouse_genomes_project X 16150500 16184120 - MGP_C3HHeJ_P0095382 Zfp182 protein_coding protein_coding MGP_C3HHeJ_T0095383.1 MGP_C3HHeJ_G0035291.1 mouse_genomes_project X 16151146 16184054 - MGP_C3HHeJ_P0095383 Zfp182 protein_coding protein_coding MGP_C3HHeJ_T0095384.1 MGP_C3HHeJ_G0035291.1 mouse_genomes_project X 16153146 16184384 - Zfp182 protein_coding processed_transcript MGP_C3HHeJ_T0095385.1 MGP_C3HHeJ_G0035291.1 mouse_genomes_project X 16179745 16184111 - Zfp182 protein_coding processed_transcript MGP_C3HHeJ_T0016076.1 MGP_C3HHeJ_G0014180.1 mouse_genomes_project X 37509794 37514040 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097640.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164684845 164835264 + MGP_C3HHeJ_P0097640 Gpm6b protein_coding protein_coding MGP_C3HHeJ_T0097641.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164684906 164835264 + MGP_C3HHeJ_P0097641 Gpm6b protein_coding protein_coding MGP_C3HHeJ_T0097642.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164684906 164835264 + MGP_C3HHeJ_P0097642 Gpm6b protein_coding protein_coding MGP_C3HHeJ_T0097643.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164791034 164830277 + MGP_C3HHeJ_P0097643 Gpm6b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097644.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164791034 164835264 + MGP_C3HHeJ_P0097644 Gpm6b protein_coding protein_coding MGP_C3HHeJ_T0097645.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164791034 164835264 + MGP_C3HHeJ_P0097645 Gpm6b protein_coding protein_coding MGP_C3HHeJ_T0097646.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164791034 164835264 + MGP_C3HHeJ_P0097646 Gpm6b protein_coding protein_coding MGP_C3HHeJ_T0097647.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164791034 164835264 + MGP_C3HHeJ_P0097647 Gpm6b protein_coding protein_coding MGP_C3HHeJ_T0097648.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164791034 164830277 + MGP_C3HHeJ_P0097648 Gpm6b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097649.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164791034 164835264 + MGP_C3HHeJ_P0097649 Gpm6b protein_coding protein_coding MGP_C3HHeJ_T0097650.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164791034 164835264 + MGP_C3HHeJ_P0097650 Gpm6b protein_coding protein_coding MGP_C3HHeJ_T0097651.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164791184 164819548 + Gpm6b protein_coding retained_intron MGP_C3HHeJ_T0016077.1 MGP_C3HHeJ_G0014181.1 mouse_genomes_project X 37725698 37725866 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097703.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168226945 168544232 + MGP_C3HHeJ_P0097703 Mid1 protein_coding protein_coding MGP_C3HHeJ_T0097704.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168226945 168544232 + MGP_C3HHeJ_P0097704 Mid1 protein_coding protein_coding MGP_C3HHeJ_T0097708.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168378426 168544232 + MGP_C3HHeJ_P0097708 Mid1 protein_coding protein_coding MGP_C3HHeJ_T0097709.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168430204 168544232 + MGP_C3HHeJ_P0097709 Mid1 protein_coding protein_coding MGP_C3HHeJ_T0097710.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168430246 168544050 + MGP_C3HHeJ_P0097710 Mid1 protein_coding protein_coding MGP_C3HHeJ_T0097711.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168479794 168544232 + MGP_C3HHeJ_P0097711 Mid1 protein_coding protein_coding MGP_C3HHeJ_T0097712.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168479794 168543114 + MGP_C3HHeJ_P0097712 Mid1 protein_coding protein_coding MGP_C3HHeJ_T0097713.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168480318 168529088 + Mid1 protein_coding processed_transcript MGP_C3HHeJ_T0097714.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168526713 168537200 + Mid1 protein_coding processed_transcript MGP_C3HHeJ_T0097715.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168526713 168537200 + Mid1 protein_coding processed_transcript MGP_C3HHeJ_T0097716.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168529087 168537200 + Mid1 protein_coding processed_transcript MGP_C3HHeJ_T0097717.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168529087 168537201 + Mid1 protein_coding processed_transcript MGP_C3HHeJ_T0097718.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168529087 168537200 + Mid1 protein_coding processed_transcript MGP_C3HHeJ_T0097719.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168529087 168537200 + Mid1 protein_coding processed_transcript MGP_C3HHeJ_T0097721.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168533462 168544232 + MGP_C3HHeJ_P0097721 Mid1 protein_coding protein_coding MGP_C3HHeJ_T0016408.1 MGP_C3HHeJ_G0014512.1 mouse_genomes_project X 106200226 106200382 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102367.1 MGP_C3HHeJ_G0040330.1 mouse_genomes_project X 132553722 132557084 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016338.1 MGP_C3HHeJ_G0014442.1 mouse_genomes_project X 95931813 95932815 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016677.1 MGP_C3HHeJ_G0014781.1 mouse_genomes_project X 162406843 162407019 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015973.1 MGP_C3HHeJ_G0014077.1 mouse_genomes_project X 2626857 2627570 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009346.1 MGP_C3HHeJ_G0007489.1 mouse_genomes_project X 148777011 148777552 - Gm27191 lincRNA lincRNA MGP_C3HHeJ_T0099810.1 MGP_C3HHeJ_G0038004.1 mouse_genomes_project X 155298780 155298944 + Gm22666 snRNA snRNA MGP_C3HHeJ_T0016507.1 MGP_C3HHeJ_G0014611.1 mouse_genomes_project X 132111618 132112480 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016640.1 MGP_C3HHeJ_G0014744.1 mouse_genomes_project X 155869443 155869876 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016045.1 MGP_C3HHeJ_G0014149.1 mouse_genomes_project X 17585858 17586342 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011102.1 MGP_C3HHeJ_G0009235.1 mouse_genomes_project X 98965094 98965198 - Gm27843 miRNA miRNA MGP_C3HHeJ_T0005524.1 MGP_C3HHeJ_G0004648.1 mouse_genomes_project X 92322175 92421223 + antisense antisense MGP_C3HHeJ_T0101065.1 MGP_C3HHeJ_G0039259.1 mouse_genomes_project X 155543574 155543706 - Gm25795 snoRNA snoRNA MGP_C3HHeJ_T0011137.1 MGP_C3HHeJ_G0009270.1 mouse_genomes_project X 165495748 165495857 - Gm22368 miRNA miRNA MGP_C3HHeJ_T0016311.1 MGP_C3HHeJ_G0014415.1 mouse_genomes_project X 91198194 91198812 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096068.1 MGP_C3HHeJ_G0035501.1 mouse_genomes_project X 70286561 70349052 - MGP_C3HHeJ_P0096068 Mecp2 protein_coding protein_coding MGP_C3HHeJ_T0096069.1 MGP_C3HHeJ_G0035501.1 mouse_genomes_project X 70286797 70343416 - MGP_C3HHeJ_P0096069 Mecp2 protein_coding protein_coding MGP_C3HHeJ_T0096070.1 MGP_C3HHeJ_G0035501.1 mouse_genomes_project X 70295751 70349073 - MGP_C3HHeJ_P0096070 Mecp2 protein_coding protein_coding MGP_C3HHeJ_T0096071.1 MGP_C3HHeJ_G0035501.1 mouse_genomes_project X 70295752 70348995 - MGP_C3HHeJ_P0096071 Mecp2 protein_coding protein_coding MGP_C3HHeJ_T0096072.1 MGP_C3HHeJ_G0035501.1 mouse_genomes_project X 70296133 70348993 - MGP_C3HHeJ_P0096072 Mecp2 protein_coding protein_coding MGP_C3HHeJ_T0096073.1 MGP_C3HHeJ_G0035501.1 mouse_genomes_project X 70344415 70348980 - Mecp2 protein_coding retained_intron MGP_C3HHeJ_T0002442.1 MGP_C3HHeJ_G0002360.1 mouse_genomes_project X 100694547 100699329 - TEC TEC MGP_C3HHeJ_T0097595.1 MGP_C3HHeJ_G0035919.1 mouse_genomes_project X 162494379 162495804 - MGP_C3HHeJ_P0097595 Siah1b protein_coding protein_coding MGP_C3HHeJ_T0011117.1 MGP_C3HHeJ_G0009250.1 mouse_genomes_project X 133068390 133068444 + Mir7646 miRNA miRNA MGP_C3HHeJ_T0096221.1 MGP_C3HHeJ_G0035522.1 mouse_genomes_project X 70892616 70893564 + MGP_C3HHeJ_P0096221 Olfr1325 protein_coding protein_coding MGP_C3HHeJ_T0096983.1 MGP_C3HHeJ_G0035755.1 mouse_genomes_project X 132229255 132241998 - Nxf2 protein_coding retained_intron MGP_C3HHeJ_T0096984.1 MGP_C3HHeJ_G0035755.1 mouse_genomes_project X 132229257 132250725 - MGP_C3HHeJ_P0096984 Nxf2 protein_coding protein_coding MGP_C3HHeJ_T0096985.1 MGP_C3HHeJ_G0035755.1 mouse_genomes_project X 132229257 132250725 - MGP_C3HHeJ_P0096985 Nxf2 protein_coding protein_coding MGP_C3HHeJ_T0096986.1 MGP_C3HHeJ_G0035755.1 mouse_genomes_project X 132229257 132249867 - MGP_C3HHeJ_P0096986 Nxf2 protein_coding protein_coding MGP_C3HHeJ_T0101037.1 MGP_C3HHeJ_G0039231.1 mouse_genomes_project X 89980575 89980708 + Gm23454 snoRNA snoRNA MGP_C3HHeJ_T0016531.1 MGP_C3HHeJ_G0014635.1 mouse_genomes_project X 134642038 134642782 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016361.1 MGP_C3HHeJ_G0014465.1 mouse_genomes_project X 100394641 100400110 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101024.1 MGP_C3HHeJ_G0039218.1 mouse_genomes_project X 64571110 64571236 + Gm22332 snoRNA snoRNA MGP_C3HHeJ_T0016581.1 MGP_C3HHeJ_G0014685.1 mouse_genomes_project X 142907195 142907829 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016572.1 MGP_C3HHeJ_G0014676.1 mouse_genomes_project X 141879900 141880723 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016184.1 MGP_C3HHeJ_G0014288.1 mouse_genomes_project X 64513813 64514819 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016321.1 MGP_C3HHeJ_G0014425.1 mouse_genomes_project X 92047153 92049138 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011090.1 MGP_C3HHeJ_G0009223.1 mouse_genomes_project X 69183376 69183442 + Mir2137 miRNA miRNA MGP_C3HHeJ_T0096040.1 MGP_C3HHeJ_G0035499.1 mouse_genomes_project X 70201431 70224982 - MGP_C3HHeJ_P0096040 Hcfc1 protein_coding protein_coding MGP_C3HHeJ_T0096041.1 MGP_C3HHeJ_G0035499.1 mouse_genomes_project X 70201434 70207890 - MGP_C3HHeJ_P0096041 Hcfc1 protein_coding protein_coding MGP_C3HHeJ_T0096042.1 MGP_C3HHeJ_G0035499.1 mouse_genomes_project X 70201436 70224976 - MGP_C3HHeJ_P0096042 Hcfc1 protein_coding protein_coding MGP_C3HHeJ_T0096043.1 MGP_C3HHeJ_G0035499.1 mouse_genomes_project X 70203960 70206072 - Hcfc1 protein_coding retained_intron MGP_C3HHeJ_T0096044.1 MGP_C3HHeJ_G0035499.1 mouse_genomes_project X 70205834 70206986 - Hcfc1 protein_coding processed_transcript MGP_C3HHeJ_T0096045.1 MGP_C3HHeJ_G0035499.1 mouse_genomes_project X 70213755 70216064 - Hcfc1 protein_coding processed_transcript MGP_C3HHeJ_T0016325.1 MGP_C3HHeJ_G0014429.1 mouse_genomes_project X 93061977 93062415 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097241.1 MGP_C3HHeJ_G0035840.1 mouse_genomes_project X 145114476 145161401 - MGP_C3HHeJ_P0097241 Il13ra2 protein_coding protein_coding MGP_C3HHeJ_T0097242.1 MGP_C3HHeJ_G0035840.1 mouse_genomes_project X 145114478 145135763 - MGP_C3HHeJ_P0097242 Il13ra2 protein_coding protein_coding MGP_C3HHeJ_T0015966.1 MGP_C3HHeJ_G0014070.1 mouse_genomes_project X 2159393 2159807 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096476.1 MGP_C3HHeJ_G0035607.1 mouse_genomes_project X 94193694 94239267 - MGP_C3HHeJ_P0096476 Eda2r protein_coding protein_coding MGP_C3HHeJ_T0096477.1 MGP_C3HHeJ_G0035607.1 mouse_genomes_project X 94196991 94239201 - MGP_C3HHeJ_P0096477 Eda2r protein_coding protein_coding MGP_C3HHeJ_T0096478.1 MGP_C3HHeJ_G0035607.1 mouse_genomes_project X 94197644 94239267 - Eda2r protein_coding retained_intron MGP_C3HHeJ_T0096479.1 MGP_C3HHeJ_G0035607.1 mouse_genomes_project X 94200011 94239223 - Eda2r protein_coding retained_intron MGP_C3HHeJ_T0016238.1 MGP_C3HHeJ_G0014342.1 mouse_genomes_project X 74978025 74979009 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016537.1 MGP_C3HHeJ_G0014641.1 mouse_genomes_project X 136704885 136705595 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016424.1 MGP_C3HHeJ_G0014528.1 mouse_genomes_project X 109952559 109954181 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096198.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70672991 70715003 + MGP_C3HHeJ_P0096198 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096199.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70672992 70733184 + MGP_C3HHeJ_P0096199 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096200.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70672992 70733184 + MGP_C3HHeJ_P0096200 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096201.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70673028 70720898 + MGP_C3HHeJ_P0096201 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096204.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70705543 70720960 + MGP_C3HHeJ_P0096204 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096205.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70705613 70728147 + MGP_C3HHeJ_P0096205 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096206.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70705621 70733184 + MGP_C3HHeJ_P0096206 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096207.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70705621 70733260 + MGP_C3HHeJ_P0096207 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096208.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70705642 70728506 + MGP_C3HHeJ_P0096208 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096209.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70705647 70713878 + MGP_C3HHeJ_P0096209 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096211.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70708911 70718180 + MGP_C3HHeJ_P0096211 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096212.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70710290 70724367 + MGP_C3HHeJ_P0096212 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096213.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70710324 70733184 + MGP_C3HHeJ_P0096213 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096214.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70710680 70729692 + MGP_C3HHeJ_P0096214 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096215.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70710713 70730926 + MGP_C3HHeJ_P0096215 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096216.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70710731 70714365 + Ikbkg protein_coding retained_intron MGP_C3HHeJ_T0096217.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70710772 70724864 + MGP_C3HHeJ_P0096217 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096218.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70719896 70727629 + Ikbkg protein_coding processed_transcript MGP_C3HHeJ_T0016378.1 MGP_C3HHeJ_G0014482.1 mouse_genomes_project X 101538008 101538473 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102331.1 MGP_C3HHeJ_G0040294.1 mouse_genomes_project X 3114333 3402251 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016008.1 MGP_C3HHeJ_G0014112.1 mouse_genomes_project X 8457445 8457981 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011026.1 MGP_C3HHeJ_G0009159.1 mouse_genomes_project X 1876303 1876368 - Mir362 miRNA miRNA MGP_C3HHeJ_T0095958.1 MGP_C3HHeJ_G0035490.1 mouse_genomes_project X 70023257 70027778 + Srpk3 protein_coding retained_intron MGP_C3HHeJ_T0095959.1 MGP_C3HHeJ_G0035490.1 mouse_genomes_project X 70023257 70027778 + MGP_C3HHeJ_P0095959 Srpk3 protein_coding protein_coding MGP_C3HHeJ_T0095960.1 MGP_C3HHeJ_G0035490.1 mouse_genomes_project X 70026797 70027455 + Srpk3 protein_coding retained_intron MGP_C3HHeJ_T0095961.1 MGP_C3HHeJ_G0035490.1 mouse_genomes_project X 70026830 70027581 + Srpk3 protein_coding retained_intron MGP_C3HHeJ_T0016286.1 MGP_C3HHeJ_G0014390.1 mouse_genomes_project X 87268305 87268822 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096074.1 MGP_C3HHeJ_G0035502.1 mouse_genomes_project X 70391920 70416138 + MGP_C3HHeJ_P0096074 Opn1mw protein_coding protein_coding MGP_C3HHeJ_T0096075.1 MGP_C3HHeJ_G0035502.1 mouse_genomes_project X 70391922 70416129 + MGP_C3HHeJ_P0096075 Opn1mw protein_coding protein_coding MGP_C3HHeJ_T0096076.1 MGP_C3HHeJ_G0035502.1 mouse_genomes_project X 70391937 70408931 + Opn1mw protein_coding processed_transcript MGP_C3HHeJ_T0096077.1 MGP_C3HHeJ_G0035502.1 mouse_genomes_project X 70403332 70416134 + Opn1mw protein_coding processed_transcript MGP_C3HHeJ_T0096078.1 MGP_C3HHeJ_G0035502.1 mouse_genomes_project X 70403353 70405296 + Opn1mw protein_coding processed_transcript MGP_C3HHeJ_T0096079.1 MGP_C3HHeJ_G0035502.1 mouse_genomes_project X 70403850 70416134 + MGP_C3HHeJ_P0096079 Opn1mw protein_coding protein_coding MGP_C3HHeJ_T0016079.1 MGP_C3HHeJ_G0014183.1 mouse_genomes_project X 38804538 38805196 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096849.1 MGP_C3HHeJ_G0035713.1 mouse_genomes_project X 110229886 110377481 - MGP_C3HHeJ_P0096849 Chm protein_coding protein_coding MGP_C3HHeJ_T0096850.1 MGP_C3HHeJ_G0035713.1 mouse_genomes_project X 110232467 110236863 - Chm protein_coding processed_transcript MGP_C3HHeJ_T0096851.1 MGP_C3HHeJ_G0035713.1 mouse_genomes_project X 110251804 110371396 - Chm protein_coding processed_transcript MGP_C3HHeJ_T0096852.1 MGP_C3HHeJ_G0035713.1 mouse_genomes_project X 110313273 110371396 - Chm protein_coding processed_transcript MGP_C3HHeJ_T0016556.1 MGP_C3HHeJ_G0014660.1 mouse_genomes_project X 139481257 139481530 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096293.1 MGP_C3HHeJ_G0035547.1 mouse_genomes_project X 72962595 72982990 - MGP_C3HHeJ_P0096293 Cldn34d protein_coding protein_coding MGP_C3HHeJ_T0095642.1 MGP_C3HHeJ_G0035376.1 mouse_genomes_project X 45162373 45163333 - MGP_C3HHeJ_P0095642 Olfr1321 protein_coding protein_coding MGP_C3HHeJ_T0005505.1 MGP_C3HHeJ_G0004631.1 mouse_genomes_project X 41690130 41750708 - 4930515L19Rik antisense antisense MGP_C3HHeJ_T0016089.1 MGP_C3HHeJ_G0014193.1 mouse_genomes_project X 40959468 40961918 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098225.1 MGP_C3HHeJ_G0036437.1 mouse_genomes_project X 79671546 79671663 + n-R5s9 rRNA rRNA MGP_C3HHeJ_T0096357.1 MGP_C3HHeJ_G0035566.1 mouse_genomes_project X 82253722 82275307 + MGP_C3HHeJ_P0096357 5430427O19Rik protein_coding protein_coding MGP_C3HHeJ_T0016273.1 MGP_C3HHeJ_G0014377.1 mouse_genomes_project X 85135190 85135448 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097423.1 MGP_C3HHeJ_G0035876.1 mouse_genomes_project X 152521416 152525356 + MGP_C3HHeJ_P0097423 protein_coding protein_coding MGP_C3HHeJ_T0096653.1 MGP_C3HHeJ_G0035647.1 mouse_genomes_project X 99074934 99083157 + MGP_C3HHeJ_P0096653 Pin4 protein_coding protein_coding MGP_C3HHeJ_T0096654.1 MGP_C3HHeJ_G0035647.1 mouse_genomes_project X 99075056 99083154 + Pin4 protein_coding processed_transcript MGP_C3HHeJ_T0016324.1 MGP_C3HHeJ_G0014428.1 mouse_genomes_project X 92226881 92228995 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098219.1 MGP_C3HHeJ_G0036431.1 mouse_genomes_project X 13354115 13354234 - n-R5s5 rRNA rRNA MGP_C3HHeJ_T0016600.1 MGP_C3HHeJ_G0014704.1 mouse_genomes_project X 148612727 148613377 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016236.1 MGP_C3HHeJ_G0014340.1 mouse_genomes_project X 74940102 74940474 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016143.1 MGP_C3HHeJ_G0014247.1 mouse_genomes_project X 56470289 56471120 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005518.1 MGP_C3HHeJ_G0004642.1 mouse_genomes_project X 69627944 69638259 - Gm26726 antisense antisense MGP_C3HHeJ_T0097544.1 MGP_C3HHeJ_G0035906.1 mouse_genomes_project X 160068162 160133928 + MGP_C3HHeJ_P0097544 Rai2 protein_coding protein_coding MGP_C3HHeJ_T0097545.1 MGP_C3HHeJ_G0035906.1 mouse_genomes_project X 160068720 160133930 + MGP_C3HHeJ_P0097545 Rai2 protein_coding protein_coding MGP_C3HHeJ_T0016567.1 MGP_C3HHeJ_G0014671.1 mouse_genomes_project X 140147816 140148248 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095299.1 MGP_C3HHeJ_G0035270.1 mouse_genomes_project X 12540472 12554267 - Fundc1 protein_coding processed_transcript MGP_C3HHeJ_T0095300.1 MGP_C3HHeJ_G0035270.1 mouse_genomes_project X 12540472 12554896 - MGP_C3HHeJ_P0095300 Fundc1 protein_coding protein_coding MGP_C3HHeJ_T0095301.1 MGP_C3HHeJ_G0035270.1 mouse_genomes_project X 12540508 12554942 - MGP_C3HHeJ_P0095301 Fundc1 protein_coding protein_coding MGP_C3HHeJ_T0099796.1 MGP_C3HHeJ_G0037990.1 mouse_genomes_project X 125043213 125043320 - Gm25061 snRNA snRNA MGP_C3HHeJ_T0099761.1 MGP_C3HHeJ_G0037955.1 mouse_genomes_project X 43753160 43753261 + Gm22612 snRNA snRNA MGP_C3HHeJ_T0016327.1 MGP_C3HHeJ_G0014431.1 mouse_genomes_project X 93401891 93403599 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095809.1 MGP_C3HHeJ_G0035445.1 mouse_genomes_project X 64633526 64635344 + MGP_C3HHeJ_P0095809 protein_coding protein_coding MGP_C3HHeJ_T0096901.1 MGP_C3HHeJ_G0035734.1 mouse_genomes_project X 131118844 131126205 - MGP_C3HHeJ_P0096901 Tspan6 protein_coding protein_coding MGP_C3HHeJ_T0096902.1 MGP_C3HHeJ_G0035734.1 mouse_genomes_project X 131120477 131126070 - MGP_C3HHeJ_P0096902 Tspan6 protein_coding protein_coding MGP_C3HHeJ_T0096903.1 MGP_C3HHeJ_G0035734.1 mouse_genomes_project X 131122296 131126070 - MGP_C3HHeJ_P0096903 Tspan6 protein_coding protein_coding MGP_C3HHeJ_T0096904.1 MGP_C3HHeJ_G0035734.1 mouse_genomes_project X 131124493 131125889 - Tspan6 protein_coding processed_transcript MGP_C3HHeJ_T0015969.1 MGP_C3HHeJ_G0014073.1 mouse_genomes_project X 2334900 2335304 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016133.1 MGP_C3HHeJ_G0014237.1 mouse_genomes_project X 53637728 53638322 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005545.1 MGP_C3HHeJ_G0004662.1 mouse_genomes_project X 165842741 165845708 + Gm15239 antisense antisense MGP_C3HHeJ_T0096529.1 MGP_C3HHeJ_G0035622.1 mouse_genomes_project X 97496888 97509863 + MGP_C3HHeJ_P0096529 Arr3 protein_coding protein_coding MGP_C3HHeJ_T0096530.1 MGP_C3HHeJ_G0035622.1 mouse_genomes_project X 97496914 97505000 + Arr3 protein_coding retained_intron MGP_C3HHeJ_T0096531.1 MGP_C3HHeJ_G0035622.1 mouse_genomes_project X 97496935 97504440 + Arr3 protein_coding retained_intron MGP_C3HHeJ_T0096532.1 MGP_C3HHeJ_G0035622.1 mouse_genomes_project X 97496946 97505208 + Arr3 protein_coding retained_intron MGP_C3HHeJ_T0096533.1 MGP_C3HHeJ_G0035622.1 mouse_genomes_project X 97496953 97509863 + Arr3 protein_coding retained_intron MGP_C3HHeJ_T0096534.1 MGP_C3HHeJ_G0035622.1 mouse_genomes_project X 97497038 97503310 + MGP_C3HHeJ_P0096534 Arr3 protein_coding protein_coding MGP_C3HHeJ_T0096535.1 MGP_C3HHeJ_G0035622.1 mouse_genomes_project X 97498003 97509757 + MGP_C3HHeJ_P0096535 Arr3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0096536.1 MGP_C3HHeJ_G0035622.1 mouse_genomes_project X 97503204 97505807 + Arr3 protein_coding retained_intron MGP_C3HHeJ_T0016117.1 MGP_C3HHeJ_G0014221.1 mouse_genomes_project X 48357665 48359063 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011661.1 MGP_C3HHeJ_G0009794.1 mouse_genomes_project X 48806556 48806863 + Gm23718 misc_RNA misc_RNA MGP_C3HHeJ_T0016259.1 MGP_C3HHeJ_G0014363.1 mouse_genomes_project X 82094751 82095337 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096642.1 MGP_C3HHeJ_G0035644.1 mouse_genomes_project X 98796388 98899023 + Nhsl2 protein_coding processed_transcript MGP_C3HHeJ_T0096643.1 MGP_C3HHeJ_G0035644.1 mouse_genomes_project X 98796388 99029883 + MGP_C3HHeJ_P0096643 Nhsl2 protein_coding protein_coding MGP_C3HHeJ_T0096644.1 MGP_C3HHeJ_G0035644.1 mouse_genomes_project X 98796388 99046598 + MGP_C3HHeJ_P0096644 Nhsl2 protein_coding protein_coding MGP_C3HHeJ_T0096645.1 MGP_C3HHeJ_G0035644.1 mouse_genomes_project X 98911184 99031488 + Nhsl2 protein_coding processed_transcript MGP_C3HHeJ_T0096646.1 MGP_C3HHeJ_G0035644.1 mouse_genomes_project X 98955615 99031463 + MGP_C3HHeJ_P0096646 Nhsl2 protein_coding protein_coding MGP_C3HHeJ_T0096647.1 MGP_C3HHeJ_G0035644.1 mouse_genomes_project X 99004122 99025573 + Nhsl2 protein_coding processed_transcript MGP_C3HHeJ_T0096651.1 MGP_C3HHeJ_G0035644.1 mouse_genomes_project X 99026548 99033907 + Nhsl2 protein_coding processed_transcript MGP_C3HHeJ_T0095456.1 MGP_C3HHeJ_G0035319.1 mouse_genomes_project X 32348654 32367505 - MGP_C3HHeJ_P0095456 Upf3b protein_coding protein_coding MGP_C3HHeJ_T0095457.1 MGP_C3HHeJ_G0035319.1 mouse_genomes_project X 32352652 32361876 - MGP_C3HHeJ_P0095457 Upf3b protein_coding protein_coding MGP_C3HHeJ_T0095458.1 MGP_C3HHeJ_G0035319.1 mouse_genomes_project X 32354426 32367505 - Upf3b protein_coding processed_transcript MGP_C3HHeJ_T0095310.1 MGP_C3HHeJ_G0035274.1 mouse_genomes_project X 14526846 14528702 - MGP_C3HHeJ_P0095310 BC049702 protein_coding protein_coding MGP_C3HHeJ_T0016525.1 MGP_C3HHeJ_G0014629.1 mouse_genomes_project X 134397012 134398134 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095631.1 MGP_C3HHeJ_G0035373.1 mouse_genomes_project X 44458907 44649569 - MGP_C3HHeJ_P0095631 Enox2 protein_coding protein_coding MGP_C3HHeJ_T0095632.1 MGP_C3HHeJ_G0035373.1 mouse_genomes_project X 44515855 44743645 - Enox2 protein_coding processed_transcript MGP_C3HHeJ_T0095633.1 MGP_C3HHeJ_G0035373.1 mouse_genomes_project X 44519071 44743598 - Enox2 protein_coding processed_transcript MGP_C3HHeJ_T0095634.1 MGP_C3HHeJ_G0035373.1 mouse_genomes_project X 44523370 44743628 - Enox2 protein_coding processed_transcript MGP_C3HHeJ_T0011045.1 MGP_C3HHeJ_G0009178.1 mouse_genomes_project X 46653590 46653670 - Gm25241 miRNA miRNA MGP_C3HHeJ_T0101029.1 MGP_C3HHeJ_G0039223.1 mouse_genomes_project X 70544021 70544158 + Snora70 snoRNA snoRNA MGP_C3HHeJ_T0097283.1 MGP_C3HHeJ_G0035846.1 mouse_genomes_project X 148567073 148579745 - MGP_C3HHeJ_P0097283 protein_coding unknown_likely_coding MGP_C3HHeJ_T0097284.1 MGP_C3HHeJ_G0035846.1 mouse_genomes_project X 148567634 148580009 - MGP_C3HHeJ_P0097284 protein_coding protein_coding MGP_C3HHeJ_T0097285.1 MGP_C3HHeJ_G0035846.1 mouse_genomes_project X 148567634 148580046 - MGP_C3HHeJ_P0097285 protein_coding protein_coding MGP_C3HHeJ_T0097286.1 MGP_C3HHeJ_G0035846.1 mouse_genomes_project X 148567752 148578057 - MGP_C3HHeJ_P0097286 protein_coding protein_coding MGP_C3HHeJ_T0097287.1 MGP_C3HHeJ_G0035846.1 mouse_genomes_project X 148571398 148573758 - protein_coding retained_intron MGP_C3HHeJ_T0097288.1 MGP_C3HHeJ_G0035846.1 mouse_genomes_project X 148571551 148580009 - MGP_C3HHeJ_P0097288 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097289.1 MGP_C3HHeJ_G0035846.1 mouse_genomes_project X 148571675 148573807 - protein_coding retained_intron MGP_C3HHeJ_T0097290.1 MGP_C3HHeJ_G0035846.1 mouse_genomes_project X 148573391 148574934 - protein_coding retained_intron MGP_C3HHeJ_T0009366.1 MGP_C3HHeJ_G0007501.1 mouse_genomes_project X 167981670 168012407 + Gm15245 lincRNA lincRNA MGP_C3HHeJ_T0097425.1 MGP_C3HHeJ_G0035878.1 mouse_genomes_project X 152618818 152621499 + MGP_C3HHeJ_P0097425 Samt4 protein_coding protein_coding MGP_C3HHeJ_T0094994.1 MGP_C3HHeJ_G0035188.1 mouse_genomes_project X 1440281 1561792 + MGP_C3HHeJ_P0094994 Dgkk protein_coding protein_coding MGP_C3HHeJ_T0016087.1 MGP_C3HHeJ_G0014191.1 mouse_genomes_project X 40250425 40251395 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016019.1 MGP_C3HHeJ_G0014123.1 mouse_genomes_project X 12257389 12259722 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016134.1 MGP_C3HHeJ_G0014238.1 mouse_genomes_project X 54077039 54077363 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009311.1 MGP_C3HHeJ_G0007468.1 mouse_genomes_project X 91606985 91611307 + Gm26617 lincRNA lincRNA MGP_C3HHeJ_T0016570.1 MGP_C3HHeJ_G0014674.1 mouse_genomes_project X 140820726 140821756 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016067.1 MGP_C3HHeJ_G0014171.1 mouse_genomes_project X 35389461 35390913 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016062.1 MGP_C3HHeJ_G0014166.1 mouse_genomes_project X 34818810 34819217 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016603.1 MGP_C3HHeJ_G0014707.1 mouse_genomes_project X 148940205 148940864 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102357.1 MGP_C3HHeJ_G0040320.1 mouse_genomes_project X 82749261 82750284 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011076.1 MGP_C3HHeJ_G0009209.1 mouse_genomes_project X 62864960 62865038 - Mir881 miRNA miRNA MGP_C3HHeJ_T0095436.1 MGP_C3HHeJ_G0035313.1 mouse_genomes_project X 32071265 32112495 - MGP_C3HHeJ_P0095436 C330007P06Rik protein_coding protein_coding MGP_C3HHeJ_T0095437.1 MGP_C3HHeJ_G0035313.1 mouse_genomes_project X 32087121 32105283 - C330007P06Rik protein_coding retained_intron MGP_C3HHeJ_T0095438.1 MGP_C3HHeJ_G0035313.1 mouse_genomes_project X 32096006 32112503 - MGP_C3HHeJ_P0095438 C330007P06Rik protein_coding protein_coding MGP_C3HHeJ_T0095439.1 MGP_C3HHeJ_G0035313.1 mouse_genomes_project X 32096013 32123586 - MGP_C3HHeJ_P0095439 C330007P06Rik protein_coding protein_coding MGP_C3HHeJ_T0096997.1 MGP_C3HHeJ_G0035763.1 mouse_genomes_project X 132890277 132900477 - MGP_C3HHeJ_P0096997 Nxf7 protein_coding protein_coding MGP_C3HHeJ_T0096998.1 MGP_C3HHeJ_G0035763.1 mouse_genomes_project X 132890277 132910269 - MGP_C3HHeJ_P0096998 Nxf7 protein_coding protein_coding MGP_C3HHeJ_T0096999.1 MGP_C3HHeJ_G0035763.1 mouse_genomes_project X 132890485 132905378 - MGP_C3HHeJ_P0096999 Nxf7 protein_coding protein_coding MGP_C3HHeJ_T0097000.1 MGP_C3HHeJ_G0035763.1 mouse_genomes_project X 132895102 132896856 - Nxf7 protein_coding retained_intron MGP_C3HHeJ_T0097001.1 MGP_C3HHeJ_G0035763.1 mouse_genomes_project X 132899939 132910250 - MGP_C3HHeJ_P0097001 Nxf7 protein_coding protein_coding MGP_C3HHeJ_T0097002.1 MGP_C3HHeJ_G0035763.1 mouse_genomes_project X 132900122 132908200 - MGP_C3HHeJ_P0097002 Nxf7 protein_coding protein_coding MGP_C3HHeJ_T0095243.1 MGP_C3HHeJ_G0035253.1 mouse_genomes_project X 6948966 6993659 - MGP_C3HHeJ_P0095243 Bcor protein_coding protein_coding MGP_C3HHeJ_T0095244.1 MGP_C3HHeJ_G0035253.1 mouse_genomes_project X 6948966 6993659 - MGP_C3HHeJ_P0095244 Bcor protein_coding protein_coding MGP_C3HHeJ_T0095245.1 MGP_C3HHeJ_G0035253.1 mouse_genomes_project X 6948966 6993659 - MGP_C3HHeJ_P0095245 Bcor protein_coding protein_coding MGP_C3HHeJ_T0095246.1 MGP_C3HHeJ_G0035253.1 mouse_genomes_project X 6948966 6993659 - MGP_C3HHeJ_P0095246 Bcor protein_coding protein_coding MGP_C3HHeJ_T0095247.1 MGP_C3HHeJ_G0035253.1 mouse_genomes_project X 6948969 7079076 - MGP_C3HHeJ_P0095247 Bcor protein_coding protein_coding MGP_C3HHeJ_T0095248.1 MGP_C3HHeJ_G0035253.1 mouse_genomes_project X 6972098 7044836 - MGP_C3HHeJ_P0095248 Bcor protein_coding protein_coding MGP_C3HHeJ_T0095249.1 MGP_C3HHeJ_G0035253.1 mouse_genomes_project X 6972188 7044786 - MGP_C3HHeJ_P0095249 Bcor protein_coding protein_coding MGP_C3HHeJ_T0095200.1 MGP_C3HHeJ_G0035234.1 mouse_genomes_project X 3517853 3527156 + MGP_C3HHeJ_P0095200 protein_coding protein_coding MGP_C3HHeJ_T0097053.1 MGP_C3HHeJ_G0035785.1 mouse_genomes_project X 134314569 134325201 - MGP_C3HHeJ_P0097053 Rab9b protein_coding protein_coding MGP_C3HHeJ_T0101289.1 MGP_C3HHeJ_G0039388.1 mouse_genomes_project X 5290004 5291943 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101290.1 MGP_C3HHeJ_G0039388.1 mouse_genomes_project X 5291347 5291838 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0095804.1 MGP_C3HHeJ_G0035441.1 mouse_genomes_project X 62722969 62735003 + MGP_C3HHeJ_P0095804 Slitrk2 protein_coding protein_coding MGP_C3HHeJ_T0095805.1 MGP_C3HHeJ_G0035441.1 mouse_genomes_project X 62726634 62730116 + MGP_C3HHeJ_P0095805 Slitrk2 protein_coding protein_coding MGP_C3HHeJ_T0011101.1 MGP_C3HHeJ_G0009234.1 mouse_genomes_project X 97266797 97266886 + Mir676 miRNA miRNA MGP_C3HHeJ_T0016469.1 MGP_C3HHeJ_G0014573.1 mouse_genomes_project X 118595367 118596014 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096560.1 MGP_C3HHeJ_G0035628.1 mouse_genomes_project X 97971757 97978360 - Slc7a3 protein_coding retained_intron MGP_C3HHeJ_T0096561.1 MGP_C3HHeJ_G0035628.1 mouse_genomes_project X 97971769 97978307 - MGP_C3HHeJ_P0096561 Slc7a3 protein_coding protein_coding MGP_C3HHeJ_T0096562.1 MGP_C3HHeJ_G0035628.1 mouse_genomes_project X 97971770 97979066 - MGP_C3HHeJ_P0096562 Slc7a3 protein_coding protein_coding MGP_C3HHeJ_T0096563.1 MGP_C3HHeJ_G0035628.1 mouse_genomes_project X 97971770 97978327 - MGP_C3HHeJ_P0096563 Slc7a3 protein_coding protein_coding MGP_C3HHeJ_T0096564.1 MGP_C3HHeJ_G0035628.1 mouse_genomes_project X 97972354 97977135 - Slc7a3 protein_coding processed_transcript MGP_C3HHeJ_T0096565.1 MGP_C3HHeJ_G0035628.1 mouse_genomes_project X 97974148 97974812 - Slc7a3 protein_coding retained_intron MGP_C3HHeJ_T0096566.1 MGP_C3HHeJ_G0035628.1 mouse_genomes_project X 97974336 97975038 - Slc7a3 protein_coding retained_intron MGP_C3HHeJ_T0096324.1 MGP_C3HHeJ_G0035559.1 mouse_genomes_project X 77386549 77411314 + Tmem47 protein_coding processed_transcript MGP_C3HHeJ_T0096325.1 MGP_C3HHeJ_G0035559.1 mouse_genomes_project X 77386556 77412269 + MGP_C3HHeJ_P0096325 Tmem47 protein_coding protein_coding MGP_C3HHeJ_T0096326.1 MGP_C3HHeJ_G0035559.1 mouse_genomes_project X 77386567 77414416 + MGP_C3HHeJ_P0096326 Tmem47 protein_coding protein_coding MGP_C3HHeJ_T0096390.1 MGP_C3HHeJ_G0035585.1 mouse_genomes_project X 90710651 90718999 + MGP_C3HHeJ_P0096390 AU015836 protein_coding protein_coding MGP_C3HHeJ_T0096391.1 MGP_C3HHeJ_G0035585.1 mouse_genomes_project X 90710666 90718999 + MGP_C3HHeJ_P0096391 AU015836 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096392.1 MGP_C3HHeJ_G0035585.1 mouse_genomes_project X 90710674 90711651 + MGP_C3HHeJ_P0096392 AU015836 protein_coding protein_coding MGP_C3HHeJ_T0096393.1 MGP_C3HHeJ_G0035585.1 mouse_genomes_project X 90711634 90714162 + AU015836 protein_coding processed_transcript MGP_C3HHeJ_T0096394.1 MGP_C3HHeJ_G0035585.1 mouse_genomes_project X 90711788 90718600 + MGP_C3HHeJ_P0096394 AU015836 protein_coding protein_coding MGP_C3HHeJ_T0097633.1 MGP_C3HHeJ_G0035930.1 mouse_genomes_project X 163421048 163437472 + MGP_C3HHeJ_P0097633 Fancb protein_coding protein_coding MGP_C3HHeJ_T0097634.1 MGP_C3HHeJ_G0035930.1 mouse_genomes_project X 163421048 163437472 + MGP_C3HHeJ_P0097634 Fancb protein_coding protein_coding MGP_C3HHeJ_T0097635.1 MGP_C3HHeJ_G0035930.1 mouse_genomes_project X 163421168 163437475 + MGP_C3HHeJ_P0097635 Fancb protein_coding protein_coding MGP_C3HHeJ_T0097359.1 MGP_C3HHeJ_G0035855.1 mouse_genomes_project X 149962254 149964814 + MGP_C3HHeJ_P0097359 Hsd17b10 protein_coding protein_coding MGP_C3HHeJ_T0097360.1 MGP_C3HHeJ_G0035855.1 mouse_genomes_project X 149962254 149964814 + MGP_C3HHeJ_P0097360 Hsd17b10 protein_coding protein_coding MGP_C3HHeJ_T0097361.1 MGP_C3HHeJ_G0035855.1 mouse_genomes_project X 149962558 149964814 + Hsd17b10 protein_coding processed_transcript MGP_C3HHeJ_T0097362.1 MGP_C3HHeJ_G0035855.1 mouse_genomes_project X 149963768 149964814 + Hsd17b10 protein_coding retained_intron MGP_C3HHeJ_T0095909.1 MGP_C3HHeJ_G0035473.1 mouse_genomes_project X 69262930 69266436 + MGP_C3HHeJ_P0095909 Pnma3 protein_coding protein_coding MGP_C3HHeJ_T0016503.1 MGP_C3HHeJ_G0014607.1 mouse_genomes_project X 131957277 131957635 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009339.1 MGP_C3HHeJ_G0007483.1 mouse_genomes_project X 126202430 126205280 + 4930558G05Rik lincRNA lincRNA MGP_C3HHeJ_T0098226.1 MGP_C3HHeJ_G0036438.1 mouse_genomes_project X 82813412 82813531 - n-R5s10 rRNA rRNA MGP_C3HHeJ_T0016223.1 MGP_C3HHeJ_G0014327.1 mouse_genomes_project X 73107743 73109695 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099783.1 MGP_C3HHeJ_G0037977.1 mouse_genomes_project X 101155476 101155583 - Gm23378 snRNA snRNA MGP_C3HHeJ_T0095869.1 MGP_C3HHeJ_G0035457.1 mouse_genomes_project X 67725703 67729849 + MGP_C3HHeJ_P0095869 Hmgb3 protein_coding protein_coding MGP_C3HHeJ_T0095870.1 MGP_C3HHeJ_G0035457.1 mouse_genomes_project X 67726990 67729318 + MGP_C3HHeJ_P0095870 Hmgb3 protein_coding protein_coding MGP_C3HHeJ_T0095871.1 MGP_C3HHeJ_G0035457.1 mouse_genomes_project X 67727827 67729317 + Hmgb3 protein_coding retained_intron MGP_C3HHeJ_T0099776.1 MGP_C3HHeJ_G0037970.1 mouse_genomes_project X 84637813 84637920 + Gm25006 snRNA snRNA MGP_C3HHeJ_T0011040.1 MGP_C3HHeJ_G0009173.1 mouse_genomes_project X 34090139 34090205 - Gm25642 miRNA miRNA MGP_C3HHeJ_T0096741.1 MGP_C3HHeJ_G0035676.1 mouse_genomes_project X 103186816 103231339 - MGP_C3HHeJ_P0096741 Magt1 protein_coding protein_coding MGP_C3HHeJ_T0096742.1 MGP_C3HHeJ_G0035676.1 mouse_genomes_project X 103186816 103231346 - MGP_C3HHeJ_P0096742 Magt1 protein_coding protein_coding MGP_C3HHeJ_T0096743.1 MGP_C3HHeJ_G0035676.1 mouse_genomes_project X 103189210 103231226 - MGP_C3HHeJ_P0096743 Magt1 protein_coding protein_coding MGP_C3HHeJ_T0096744.1 MGP_C3HHeJ_G0035676.1 mouse_genomes_project X 103195428 103231220 - MGP_C3HHeJ_P0096744 Magt1 protein_coding protein_coding MGP_C3HHeJ_T0096152.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70579135 70586152 + MGP_C3HHeJ_P0096152 Gdi1 protein_coding protein_coding MGP_C3HHeJ_T0096153.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70579149 70586150 + Gdi1 protein_coding retained_intron MGP_C3HHeJ_T0096154.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70579393 70581159 + Gdi1 protein_coding processed_transcript MGP_C3HHeJ_T0096155.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70579404 70586148 + Gdi1 protein_coding retained_intron MGP_C3HHeJ_T0096156.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70579450 70581296 + MGP_C3HHeJ_P0096156 Gdi1 protein_coding protein_coding MGP_C3HHeJ_T0096157.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70579945 70581337 + Gdi1 protein_coding processed_transcript MGP_C3HHeJ_T0096158.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70581300 70583849 + Gdi1 protein_coding retained_intron MGP_C3HHeJ_T0096159.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70583307 70585438 + MGP_C3HHeJ_P0096159 Gdi1 protein_coding protein_coding MGP_C3HHeJ_T0096160.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70584133 70585218 + Gdi1 protein_coding processed_transcript MGP_C3HHeJ_T0096161.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70584662 70585315 + Gdi1 protein_coding processed_transcript MGP_C3HHeJ_T0016441.1 MGP_C3HHeJ_G0014545.1 mouse_genomes_project X 112605211 112606749 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016212.1 MGP_C3HHeJ_G0014316.1 mouse_genomes_project X 71148832 71152821 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011103.1 MGP_C3HHeJ_G0009236.1 mouse_genomes_project X 99219626 99219722 - Gm26318 miRNA miRNA MGP_C3HHeJ_T0097312.1 MGP_C3HHeJ_G0035850.1 mouse_genomes_project X 149027741 149041878 - MGP_C3HHeJ_P0097312 Tsr2 protein_coding protein_coding MGP_C3HHeJ_T0097313.1 MGP_C3HHeJ_G0035850.1 mouse_genomes_project X 149027742 149041878 - MGP_C3HHeJ_P0097313 Tsr2 protein_coding protein_coding MGP_C3HHeJ_T0097314.1 MGP_C3HHeJ_G0035850.1 mouse_genomes_project X 149030128 149041878 - MGP_C3HHeJ_P0097314 Tsr2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097315.1 MGP_C3HHeJ_G0035850.1 mouse_genomes_project X 149030339 149041858 - Tsr2 protein_coding processed_transcript MGP_C3HHeJ_T0101301.1 MGP_C3HHeJ_G0039395.1 mouse_genomes_project X 85467937 85468380 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101302.1 MGP_C3HHeJ_G0039395.1 mouse_genomes_project X 85467990 85468197 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101032.1 MGP_C3HHeJ_G0039226.1 mouse_genomes_project X 72237213 72237340 + Gm23320 snoRNA snoRNA MGP_C3HHeJ_T0016501.1 MGP_C3HHeJ_G0014605.1 mouse_genomes_project X 131277913 131279542 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096283.1 MGP_C3HHeJ_G0035542.1 mouse_genomes_project X 72132778 72225204 - MGP_C3HHeJ_P0096283 Pls3 protein_coding protein_coding MGP_C3HHeJ_T0096284.1 MGP_C3HHeJ_G0035542.1 mouse_genomes_project X 72132787 72224617 - MGP_C3HHeJ_P0096284 Pls3 protein_coding protein_coding MGP_C3HHeJ_T0096285.1 MGP_C3HHeJ_G0035542.1 mouse_genomes_project X 72132787 72176756 - MGP_C3HHeJ_P0096285 Pls3 protein_coding protein_coding MGP_C3HHeJ_T0096286.1 MGP_C3HHeJ_G0035542.1 mouse_genomes_project X 72132792 72192862 - MGP_C3HHeJ_P0096286 Pls3 protein_coding protein_coding MGP_C3HHeJ_T0096287.1 MGP_C3HHeJ_G0035542.1 mouse_genomes_project X 72133895 72192984 - MGP_C3HHeJ_P0096287 Pls3 protein_coding protein_coding MGP_C3HHeJ_T0016448.1 MGP_C3HHeJ_G0014552.1 mouse_genomes_project X 114454974 114455247 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016380.1 MGP_C3HHeJ_G0014484.1 mouse_genomes_project X 102148656 102149175 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016404.1 MGP_C3HHeJ_G0014508.1 mouse_genomes_project X 104652824 104653851 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016598.1 MGP_C3HHeJ_G0014702.1 mouse_genomes_project X 148356139 148356418 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101045.1 MGP_C3HHeJ_G0039239.1 mouse_genomes_project X 118182303 118182431 + Gm22590 snoRNA snoRNA MGP_C3HHeJ_T0016554.1 MGP_C3HHeJ_G0014658.1 mouse_genomes_project X 139382060 139382543 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016558.1 MGP_C3HHeJ_G0014662.1 mouse_genomes_project X 139481260 139481527 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095627.1 MGP_C3HHeJ_G0035370.1 mouse_genomes_project X 44126758 44133203 - MGP_C3HHeJ_P0095627 Gpr119 protein_coding protein_coding MGP_C3HHeJ_T0096174.1 MGP_C3HHeJ_G0035514.1 mouse_genomes_project X 70627639 70629958 - MGP_C3HHeJ_P0096174 Lage3 protein_coding protein_coding MGP_C3HHeJ_T0096175.1 MGP_C3HHeJ_G0035514.1 mouse_genomes_project X 70628524 70629982 - MGP_C3HHeJ_P0096175 Lage3 protein_coding protein_coding MGP_C3HHeJ_T0096176.1 MGP_C3HHeJ_G0035514.1 mouse_genomes_project X 70628525 70629939 - MGP_C3HHeJ_P0096176 Lage3 protein_coding protein_coding MGP_C3HHeJ_T0095713.1 MGP_C3HHeJ_G0035408.1 mouse_genomes_project X 52346457 52347455 + MGP_C3HHeJ_P0095713 Gm10477 protein_coding protein_coding MGP_C3HHeJ_T0097324.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149464062 149571921 + MGP_C3HHeJ_P0097324 Phf8 protein_coding protein_coding MGP_C3HHeJ_T0097325.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149464062 149580941 + MGP_C3HHeJ_P0097325 Phf8 protein_coding protein_coding MGP_C3HHeJ_T0097326.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149464062 149524564 + MGP_C3HHeJ_P0097326 Phf8 protein_coding protein_coding MGP_C3HHeJ_T0097327.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149464559 149546422 + MGP_C3HHeJ_P0097327 Phf8 protein_coding protein_coding MGP_C3HHeJ_T0097328.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149464571 149571921 + MGP_C3HHeJ_P0097328 Phf8 protein_coding protein_coding MGP_C3HHeJ_T0097329.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149464577 149536069 + MGP_C3HHeJ_P0097329 Phf8 protein_coding protein_coding MGP_C3HHeJ_T0097330.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149464577 149580943 + MGP_C3HHeJ_P0097330 Phf8 protein_coding protein_coding MGP_C3HHeJ_T0097331.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149465750 149500661 + MGP_C3HHeJ_P0097331 Phf8 protein_coding protein_coding MGP_C3HHeJ_T0097332.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149503929 149506153 + Phf8 protein_coding retained_intron MGP_C3HHeJ_T0097333.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149519793 149529593 + MGP_C3HHeJ_P0097333 Phf8 protein_coding protein_coding MGP_C3HHeJ_T0097334.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149576900 149580943 + Phf8 protein_coding retained_intron MGP_C3HHeJ_T0015976.1 MGP_C3HHeJ_G0014080.1 mouse_genomes_project X 2732204 2732633 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096800.1 MGP_C3HHeJ_G0035694.1 mouse_genomes_project X 105261081 105263783 - MGP_C3HHeJ_P0096800 Gm732 protein_coding protein_coding MGP_C3HHeJ_T0096801.1 MGP_C3HHeJ_G0035694.1 mouse_genomes_project X 105262222 105263812 - MGP_C3HHeJ_P0096801 Gm732 protein_coding protein_coding MGP_C3HHeJ_T0016152.1 MGP_C3HHeJ_G0014256.1 mouse_genomes_project X 57334507 57335064 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016270.1 MGP_C3HHeJ_G0014374.1 mouse_genomes_project X 84839702 84840013 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016588.1 MGP_C3HHeJ_G0014692.1 mouse_genomes_project X 143697459 143698294 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097089.1 MGP_C3HHeJ_G0035796.1 mouse_genomes_project X 136602589 136609748 + MGP_C3HHeJ_P0097089 4930513O06Rik protein_coding protein_coding MGP_C3HHeJ_T0016107.1 MGP_C3HHeJ_G0014211.1 mouse_genomes_project X 46646991 46647428 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016183.1 MGP_C3HHeJ_G0014287.1 mouse_genomes_project X 64346766 64347379 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095790.1 MGP_C3HHeJ_G0035431.1 mouse_genomes_project X 57152834 57155129 - MGP_C3HHeJ_P0095790 Cdr1 protein_coding protein_coding MGP_C3HHeJ_T0016304.1 MGP_C3HHeJ_G0014408.1 mouse_genomes_project X 90724541 90726075 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096142.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70571294 70578859 + MGP_C3HHeJ_P0096142 Atp6ap1 protein_coding protein_coding MGP_C3HHeJ_T0096143.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70571340 70576512 + MGP_C3HHeJ_P0096143 Atp6ap1 protein_coding protein_coding MGP_C3HHeJ_T0096144.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70571359 70577568 + MGP_C3HHeJ_P0096144 Atp6ap1 protein_coding protein_coding MGP_C3HHeJ_T0096145.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70571360 70578827 + MGP_C3HHeJ_P0096145 Atp6ap1 protein_coding protein_coding MGP_C3HHeJ_T0096146.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70571374 70575496 + Atp6ap1 protein_coding retained_intron MGP_C3HHeJ_T0096147.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70571430 70577601 + MGP_C3HHeJ_P0096147 Atp6ap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096148.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70571459 70576652 + MGP_C3HHeJ_P0096148 Atp6ap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096149.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70576061 70577371 + Atp6ap1 protein_coding processed_transcript MGP_C3HHeJ_T0096150.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70576690 70578151 + Atp6ap1 protein_coding retained_intron MGP_C3HHeJ_T0096151.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70577626 70578153 + MGP_C3HHeJ_P0096151 Atp6ap1 protein_coding protein_coding MGP_C3HHeJ_T0095738.1 MGP_C3HHeJ_G0035415.1 mouse_genomes_project X 52887303 52892988 + MGP_C3HHeJ_P0095738 Brs3 protein_coding protein_coding MGP_C3HHeJ_T0016054.1 MGP_C3HHeJ_G0014158.1 mouse_genomes_project X 32086600 32086757 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102362.1 MGP_C3HHeJ_G0040325.1 mouse_genomes_project X 88805528 88806572 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016586.1 MGP_C3HHeJ_G0014690.1 mouse_genomes_project X 143520112 143520930 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095283.1 MGP_C3HHeJ_G0035261.1 mouse_genomes_project X 8600391 8609099 + MGP_C3HHeJ_P0095283 Gpr34 protein_coding protein_coding MGP_C3HHeJ_T0095284.1 MGP_C3HHeJ_G0035261.1 mouse_genomes_project X 8601071 8609101 + MGP_C3HHeJ_P0095284 Gpr34 protein_coding protein_coding MGP_C3HHeJ_T0098254.1 MGP_C3HHeJ_G0036466.1 mouse_genomes_project X 54972096 54972328 - Gm26351 ribozyme ribozyme MGP_C3HHeJ_T0016014.1 MGP_C3HHeJ_G0014118.1 mouse_genomes_project X 10543315 10543652 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011053.1 MGP_C3HHeJ_G0009186.1 mouse_genomes_project X 48220274 48220339 - Mir106a miRNA miRNA MGP_C3HHeJ_T0016169.1 MGP_C3HHeJ_G0014273.1 mouse_genomes_project X 60991457 60992819 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095508.1 MGP_C3HHeJ_G0035344.1 mouse_genomes_project X 35236842 35244186 - MGP_C3HHeJ_P0095508 Cypt14 protein_coding protein_coding MGP_C3HHeJ_T0016621.1 MGP_C3HHeJ_G0014725.1 mouse_genomes_project X 152925573 152926634 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016519.1 MGP_C3HHeJ_G0014623.1 mouse_genomes_project X 133939334 133939779 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095397.1 MGP_C3HHeJ_G0035298.1 mouse_genomes_project X 16884909 16886567 - MGP_C3HHeJ_P0095397 Gm28269 protein_coding protein_coding MGP_C3HHeJ_T0096317.1 MGP_C3HHeJ_G0035558.1 mouse_genomes_project X 75587573 75840940 - MGP_C3HHeJ_P0096317 protein_coding protein_coding MGP_C3HHeJ_T0096318.1 MGP_C3HHeJ_G0035558.1 mouse_genomes_project X 75587628 75840839 - MGP_C3HHeJ_P0096318 protein_coding unknown_likely_coding MGP_C3HHeJ_T0096319.1 MGP_C3HHeJ_G0035558.1 mouse_genomes_project X 75646839 75670385 - protein_coding retained_intron MGP_C3HHeJ_T0096320.1 MGP_C3HHeJ_G0035558.1 mouse_genomes_project X 75646894 75678052 - MGP_C3HHeJ_P0096320 protein_coding protein_coding MGP_C3HHeJ_T0096321.1 MGP_C3HHeJ_G0035558.1 mouse_genomes_project X 75665624 75678130 - protein_coding processed_transcript MGP_C3HHeJ_T0096322.1 MGP_C3HHeJ_G0035558.1 mouse_genomes_project X 75721413 75751888 - MGP_C3HHeJ_P0096322 protein_coding protein_coding MGP_C3HHeJ_T0096323.1 MGP_C3HHeJ_G0035558.1 mouse_genomes_project X 75800917 75840839 - MGP_C3HHeJ_P0096323 protein_coding protein_coding MGP_C3HHeJ_T0097445.1 MGP_C3HHeJ_G0035885.1 mouse_genomes_project X 155411408 155656279 - MGP_C3HHeJ_P0097445 Phex protein_coding protein_coding MGP_C3HHeJ_T0097446.1 MGP_C3HHeJ_G0035885.1 mouse_genomes_project X 155467554 155656835 - MGP_C3HHeJ_P0097446 Phex protein_coding protein_coding MGP_C3HHeJ_T0095739.1 MGP_C3HHeJ_G0035416.1 mouse_genomes_project X 52897137 52900761 + MGP_C3HHeJ_P0095739 Htatsf1 protein_coding protein_coding MGP_C3HHeJ_T0095740.1 MGP_C3HHeJ_G0035416.1 mouse_genomes_project X 52897169 52910738 + MGP_C3HHeJ_P0095740 Htatsf1 protein_coding protein_coding MGP_C3HHeJ_T0095741.1 MGP_C3HHeJ_G0035416.1 mouse_genomes_project X 52897452 52900759 + Htatsf1 protein_coding retained_intron MGP_C3HHeJ_T0016095.1 MGP_C3HHeJ_G0014199.1 mouse_genomes_project X 42872606 42873611 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102352.1 MGP_C3HHeJ_G0040315.1 mouse_genomes_project X 74052791 74056869 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016283.1 MGP_C3HHeJ_G0014387.1 mouse_genomes_project X 85902798 85903519 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016659.1 MGP_C3HHeJ_G0014763.1 mouse_genomes_project X 158671769 158675366 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009356.1 MGP_C3HHeJ_G0007493.1 mouse_genomes_project X 160172840 160174694 - Scml1 lincRNA lincRNA MGP_C3HHeJ_T0016612.1 MGP_C3HHeJ_G0014716.1 mouse_genomes_project X 150931165 150934571 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097553.1 MGP_C3HHeJ_G0035909.1 mouse_genomes_project X 161150789 161166199 + MGP_C3HHeJ_P0097553 Rbbp7 protein_coding protein_coding MGP_C3HHeJ_T0097554.1 MGP_C3HHeJ_G0035909.1 mouse_genomes_project X 161151019 161169957 + MGP_C3HHeJ_P0097554 Rbbp7 protein_coding protein_coding MGP_C3HHeJ_T0097555.1 MGP_C3HHeJ_G0035909.1 mouse_genomes_project X 161151394 161162534 + MGP_C3HHeJ_P0097555 Rbbp7 protein_coding protein_coding MGP_C3HHeJ_T0097556.1 MGP_C3HHeJ_G0035909.1 mouse_genomes_project X 161164881 161168569 + MGP_C3HHeJ_P0097556 Rbbp7 protein_coding protein_coding MGP_C3HHeJ_T0016083.1 MGP_C3HHeJ_G0014187.1 mouse_genomes_project X 39214135 39214770 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016178.1 MGP_C3HHeJ_G0014282.1 mouse_genomes_project X 63231318 63231936 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095694.1 MGP_C3HHeJ_G0035396.1 mouse_genomes_project X 48850253 48875155 - MGP_C3HHeJ_P0095694 Mospd1 protein_coding protein_coding MGP_C3HHeJ_T0016005.1 MGP_C3HHeJ_G0014109.1 mouse_genomes_project X 8260738 8260919 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016624.1 MGP_C3HHeJ_G0014728.1 mouse_genomes_project X 153369880 153372683 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097228.1 MGP_C3HHeJ_G0035836.1 mouse_genomes_project X 142367187 142798259 + MGP_C3HHeJ_P0097228 Zcchc16 protein_coding protein_coding MGP_C3HHeJ_T0097229.1 MGP_C3HHeJ_G0035836.1 mouse_genomes_project X 142795348 142797106 + MGP_C3HHeJ_P0097229 Zcchc16 protein_coding protein_coding MGP_C3HHeJ_T0011677.1 MGP_C3HHeJ_G0009810.1 mouse_genomes_project X 124513578 124513853 + Gm22636 misc_RNA misc_RNA MGP_C3HHeJ_T0016186.1 MGP_C3HHeJ_G0014290.1 mouse_genomes_project X 64633483 64634741 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095916.1 MGP_C3HHeJ_G0035479.1 mouse_genomes_project X 69637918 69654831 + MGP_C3HHeJ_P0095916 Zfp92 protein_coding protein_coding MGP_C3HHeJ_T0095917.1 MGP_C3HHeJ_G0035479.1 mouse_genomes_project X 69638382 69656218 + MGP_C3HHeJ_P0095917 Zfp92 protein_coding protein_coding MGP_C3HHeJ_T0097424.1 MGP_C3HHeJ_G0035877.1 mouse_genomes_project X 152521416 152525358 + MGP_C3HHeJ_P0097424 protein_coding protein_coding MGP_C3HHeJ_T0016199.1 MGP_C3HHeJ_G0014303.1 mouse_genomes_project X 67910156 67910371 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101315.1 MGP_C3HHeJ_G0039404.1 mouse_genomes_project X 148139460 148140430 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0011099.1 MGP_C3HHeJ_G0009232.1 mouse_genomes_project X 93112271 93112381 + Mir223 miRNA miRNA MGP_C3HHeJ_T0098229.1 MGP_C3HHeJ_G0036441.1 mouse_genomes_project X 149733555 149733674 + n-R5s13 rRNA rRNA MGP_C3HHeJ_T0016058.1 MGP_C3HHeJ_G0014162.1 mouse_genomes_project X 34244348 34245906 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016414.1 MGP_C3HHeJ_G0014518.1 mouse_genomes_project X 107903476 107906105 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097486.1 MGP_C3HHeJ_G0035895.1 mouse_genomes_project X 157825195 157853098 + MGP_C3HHeJ_P0097486 A830080D01Rik protein_coding protein_coding MGP_C3HHeJ_T0097487.1 MGP_C3HHeJ_G0035895.1 mouse_genomes_project X 157832649 157895619 + MGP_C3HHeJ_P0097487 A830080D01Rik protein_coding protein_coding MGP_C3HHeJ_T0097488.1 MGP_C3HHeJ_G0035895.1 mouse_genomes_project X 157832797 157895606 + MGP_C3HHeJ_P0097488 A830080D01Rik protein_coding protein_coding MGP_C3HHeJ_T0097489.1 MGP_C3HHeJ_G0035895.1 mouse_genomes_project X 157841725 157853148 + MGP_C3HHeJ_P0097489 A830080D01Rik protein_coding protein_coding MGP_C3HHeJ_T0097490.1 MGP_C3HHeJ_G0035895.1 mouse_genomes_project X 157868932 157894740 + A830080D01Rik protein_coding processed_transcript MGP_C3HHeJ_T0097491.1 MGP_C3HHeJ_G0035895.1 mouse_genomes_project X 157869621 157877181 + A830080D01Rik protein_coding retained_intron MGP_C3HHeJ_T0095289.1 MGP_C3HHeJ_G0035264.1 mouse_genomes_project X 11514620 11515441 + MGP_C3HHeJ_P0095289 Cypt1 protein_coding protein_coding MGP_C3HHeJ_T0095290.1 MGP_C3HHeJ_G0035264.1 mouse_genomes_project X 11514623 11515440 + MGP_C3HHeJ_P0095290 Cypt1 protein_coding protein_coding MGP_C3HHeJ_T0097080.1 MGP_C3HHeJ_G0035793.1 mouse_genomes_project X 135690131 135691547 - MGP_C3HHeJ_P0097080 Tex13a protein_coding protein_coding MGP_C3HHeJ_T0016479.1 MGP_C3HHeJ_G0014583.1 mouse_genomes_project X 124090852 124091107 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011023.1 MGP_C3HHeJ_G0009156.1 mouse_genomes_project X 688028 688108 + Gm27907 miRNA miRNA MGP_C3HHeJ_T0099782.1 MGP_C3HHeJ_G0037976.1 mouse_genomes_project X 98861347 98861442 - Gm25828 snRNA snRNA MGP_C3HHeJ_T0016336.1 MGP_C3HHeJ_G0014440.1 mouse_genomes_project X 95373994 95374480 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009359.1 MGP_C3HHeJ_G0007496.1 mouse_genomes_project X 165116628 165144513 + Gm1720 lincRNA lincRNA MGP_C3HHeJ_T0016634.1 MGP_C3HHeJ_G0014738.1 mouse_genomes_project X 155250416 155251718 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016611.1 MGP_C3HHeJ_G0014715.1 mouse_genomes_project X 150571542 150572068 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097141.1 MGP_C3HHeJ_G0035812.1 mouse_genomes_project X 138104955 138108096 - Tsc22d3 protein_coding processed_transcript MGP_C3HHeJ_T0097142.1 MGP_C3HHeJ_G0035812.1 mouse_genomes_project X 138104955 138108615 - MGP_C3HHeJ_P0097142 Tsc22d3 protein_coding protein_coding MGP_C3HHeJ_T0097143.1 MGP_C3HHeJ_G0035812.1 mouse_genomes_project X 138104964 138108529 - Tsc22d3 protein_coding retained_intron MGP_C3HHeJ_T0097144.1 MGP_C3HHeJ_G0035812.1 mouse_genomes_project X 138105689 138172518 - MGP_C3HHeJ_P0097144 Tsc22d3 protein_coding protein_coding MGP_C3HHeJ_T0097145.1 MGP_C3HHeJ_G0035812.1 mouse_genomes_project X 138105778 138115047 - MGP_C3HHeJ_P0097145 Tsc22d3 protein_coding protein_coding MGP_C3HHeJ_T0097146.1 MGP_C3HHeJ_G0035812.1 mouse_genomes_project X 138108530 138115238 - Tsc22d3 protein_coding processed_transcript MGP_C3HHeJ_T0102334.1 MGP_C3HHeJ_G0040297.1 mouse_genomes_project X 4146190 4146444 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095367.1 MGP_C3HHeJ_G0035286.1 mouse_genomes_project X 15979296 16041557 - MGP_C3HHeJ_P0095367 Syn1 protein_coding protein_coding MGP_C3HHeJ_T0095368.1 MGP_C3HHeJ_G0035286.1 mouse_genomes_project X 15979300 16041471 - MGP_C3HHeJ_P0095368 Syn1 protein_coding protein_coding MGP_C3HHeJ_T0016301.1 MGP_C3HHeJ_G0014405.1 mouse_genomes_project X 90374753 90375024 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097322.1 MGP_C3HHeJ_G0035852.1 mouse_genomes_project X 149293392 149418103 + Fam120c protein_coding retained_intron MGP_C3HHeJ_T0097323.1 MGP_C3HHeJ_G0035852.1 mouse_genomes_project X 149293392 149418103 + MGP_C3HHeJ_P0097323 Fam120c protein_coding protein_coding MGP_C3HHeJ_T0016224.1 MGP_C3HHeJ_G0014328.1 mouse_genomes_project X 73225571 73225826 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016592.1 MGP_C3HHeJ_G0014696.1 mouse_genomes_project X 144224529 144225003 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011054.1 MGP_C3HHeJ_G0009187.1 mouse_genomes_project X 48542413 48542495 - Mir450b miRNA miRNA MGP_C3HHeJ_T0016003.1 MGP_C3HHeJ_G0014107.1 mouse_genomes_project X 7882460 7882817 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016271.1 MGP_C3HHeJ_G0014375.1 mouse_genomes_project X 85024787 85026495 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096444.1 MGP_C3HHeJ_G0035597.1 mouse_genomes_project X 92506921 92526770 - MGP_C3HHeJ_P0096444 Zc4h2 protein_coding protein_coding MGP_C3HHeJ_T0096445.1 MGP_C3HHeJ_G0035597.1 mouse_genomes_project X 92506924 92526745 - MGP_C3HHeJ_P0096445 Zc4h2 protein_coding protein_coding MGP_C3HHeJ_T0096446.1 MGP_C3HHeJ_G0035597.1 mouse_genomes_project X 92506927 92526871 - MGP_C3HHeJ_P0096446 Zc4h2 protein_coding protein_coding MGP_C3HHeJ_T0016197.1 MGP_C3HHeJ_G0014301.1 mouse_genomes_project X 67098862 67099493 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016513.1 MGP_C3HHeJ_G0014617.1 mouse_genomes_project X 133490378 133490735 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016279.1 MGP_C3HHeJ_G0014383.1 mouse_genomes_project X 85545653 85546612 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011034.1 MGP_C3HHeJ_G0009167.1 mouse_genomes_project X 14200687 14200766 - Mir222 miRNA miRNA MGP_C3HHeJ_T0095062.1 MGP_C3HHeJ_G0035203.1 mouse_genomes_project X 2389523 2392897 + MGP_C3HHeJ_P0095062 Praf2 protein_coding protein_coding MGP_C3HHeJ_T0095913.1 MGP_C3HHeJ_G0035477.1 mouse_genomes_project X 69442218 69444723 + MGP_C3HHeJ_P0095913 F8a protein_coding protein_coding MGP_C3HHeJ_T0096595.1 MGP_C3HHeJ_G0035636.1 mouse_genomes_project X 98287337 98296589 + MGP_C3HHeJ_P0096595 Gjb1 protein_coding protein_coding MGP_C3HHeJ_T0096596.1 MGP_C3HHeJ_G0035636.1 mouse_genomes_project X 98288232 98296589 + MGP_C3HHeJ_P0096596 Gjb1 protein_coding protein_coding MGP_C3HHeJ_T0096597.1 MGP_C3HHeJ_G0035636.1 mouse_genomes_project X 98294695 98296589 + MGP_C3HHeJ_P0096597 Gjb1 protein_coding protein_coding MGP_C3HHeJ_T0016602.1 MGP_C3HHeJ_G0014706.1 mouse_genomes_project X 148859070 148860610 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016192.1 MGP_C3HHeJ_G0014296.1 mouse_genomes_project X 66508174 66508699 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016683.1 MGP_C3HHeJ_G0014787.1 mouse_genomes_project X 164649447 164649846 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016296.1 MGP_C3HHeJ_G0014400.1 mouse_genomes_project X 88704429 88705092 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016374.1 MGP_C3HHeJ_G0014478.1 mouse_genomes_project X 100916532 100916840 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011116.1 MGP_C3HHeJ_G0009249.1 mouse_genomes_project X 132036313 132036414 + Mir7093 miRNA miRNA MGP_C3HHeJ_T0095797.1 MGP_C3HHeJ_G0035437.1 mouse_genomes_project X 60310993 60316224 + MGP_C3HHeJ_P0095797 3830417A13Rik protein_coding protein_coding MGP_C3HHeJ_T0095798.1 MGP_C3HHeJ_G0035437.1 mouse_genomes_project X 60311793 60314953 + MGP_C3HHeJ_P0095798 3830417A13Rik protein_coding protein_coding MGP_C3HHeJ_T0095429.1 MGP_C3HHeJ_G0035309.1 mouse_genomes_project X 31824421 31835021 + MGP_C3HHeJ_P0095429 Pgrmc1 protein_coding protein_coding MGP_C3HHeJ_T0095507.1 MGP_C3HHeJ_G0035343.1 mouse_genomes_project X 35236837 35244185 - MGP_C3HHeJ_P0095507 Cypt15 protein_coding protein_coding MGP_C3HHeJ_T0101058.1 MGP_C3HHeJ_G0039252.1 mouse_genomes_project X 141049419 141049548 + Gm23325 snoRNA snoRNA MGP_C3HHeJ_T0015962.1 MGP_C3HHeJ_G0014066.1 mouse_genomes_project X 585991 586231 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011047.1 MGP_C3HHeJ_G0009180.1 mouse_genomes_project X 47883075 47883184 - Mir717 miRNA miRNA MGP_C3HHeJ_T0016413.1 MGP_C3HHeJ_G0014517.1 mouse_genomes_project X 107836078 107837222 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095371.1 MGP_C3HHeJ_G0035288.1 mouse_genomes_project X 16046006 16052108 - MGP_C3HHeJ_P0095371 Cfp protein_coding protein_coding MGP_C3HHeJ_T0095372.1 MGP_C3HHeJ_G0035288.1 mouse_genomes_project X 16046203 16048167 - Cfp protein_coding processed_transcript MGP_C3HHeJ_T0016564.1 MGP_C3HHeJ_G0014668.1 mouse_genomes_project X 140016049 140016540 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096376.1 MGP_C3HHeJ_G0035580.1 mouse_genomes_project X 89207385 89208228 + MGP_C3HHeJ_P0096376 Gm5941 protein_coding protein_coding MGP_C3HHeJ_T0011075.1 MGP_C3HHeJ_G0009208.1 mouse_genomes_project X 62864523 62864601 - Mir878 miRNA miRNA MGP_C3HHeJ_T0016645.1 MGP_C3HHeJ_G0014749.1 mouse_genomes_project X 156455987 156458653 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005510.1 MGP_C3HHeJ_G0004635.1 mouse_genomes_project X 52182336 52185507 - Gm2155 antisense antisense MGP_C3HHeJ_T0016458.1 MGP_C3HHeJ_G0014562.1 mouse_genomes_project X 115390897 115392702 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016232.1 MGP_C3HHeJ_G0014336.1 mouse_genomes_project X 74661529 74661860 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102380.1 MGP_C3HHeJ_G0040343.1 mouse_genomes_project X 168530935 168542760 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0096687.1 MGP_C3HHeJ_G0035657.1 mouse_genomes_project X 100266685 100269150 - MGP_C3HHeJ_P0096687 Nap1l2 protein_coding protein_coding MGP_C3HHeJ_T0095411.1 MGP_C3HHeJ_G0035303.1 mouse_genomes_project X 31098407 31287972 + MGP_C3HHeJ_P0095411 Dock11 protein_coding protein_coding MGP_C3HHeJ_T0095412.1 MGP_C3HHeJ_G0035303.1 mouse_genomes_project X 31153138 31287966 + MGP_C3HHeJ_P0095412 Dock11 protein_coding protein_coding MGP_C3HHeJ_T0095413.1 MGP_C3HHeJ_G0035303.1 mouse_genomes_project X 31180552 31189502 + Dock11 protein_coding retained_intron MGP_C3HHeJ_T0095414.1 MGP_C3HHeJ_G0035303.1 mouse_genomes_project X 31222468 31227859 + Dock11 protein_coding retained_intron MGP_C3HHeJ_T0095415.1 MGP_C3HHeJ_G0035303.1 mouse_genomes_project X 31253111 31287637 + MGP_C3HHeJ_P0095415 Dock11 protein_coding protein_coding MGP_C3HHeJ_T0097620.1 MGP_C3HHeJ_G0035927.1 mouse_genomes_project X 162870545 162892666 + MGP_C3HHeJ_P0097620 Asb11 protein_coding protein_coding MGP_C3HHeJ_T0097621.1 MGP_C3HHeJ_G0035927.1 mouse_genomes_project X 162870561 162880549 + Asb11 protein_coding retained_intron MGP_C3HHeJ_T0097622.1 MGP_C3HHeJ_G0035927.1 mouse_genomes_project X 162871609 162892660 + MGP_C3HHeJ_P0097622 Asb11 protein_coding protein_coding MGP_C3HHeJ_T0016103.1 MGP_C3HHeJ_G0014207.1 mouse_genomes_project X 45370516 45371189 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097663.1 MGP_C3HHeJ_G0035939.1 mouse_genomes_project X 164970149 165033618 - MGP_C3HHeJ_P0097663 Egfl6 protein_coding protein_coding MGP_C3HHeJ_T0096976.1 MGP_C3HHeJ_G0035754.1 mouse_genomes_project X 132086707 132090086 - MGP_C3HHeJ_P0096976 Armcx2 protein_coding protein_coding MGP_C3HHeJ_T0096977.1 MGP_C3HHeJ_G0035754.1 mouse_genomes_project X 132086709 132091781 - MGP_C3HHeJ_P0096977 Armcx2 protein_coding protein_coding MGP_C3HHeJ_T0096978.1 MGP_C3HHeJ_G0035754.1 mouse_genomes_project X 132086709 132091556 - MGP_C3HHeJ_P0096978 Armcx2 protein_coding protein_coding MGP_C3HHeJ_T0096979.1 MGP_C3HHeJ_G0035754.1 mouse_genomes_project X 132086709 132091781 - MGP_C3HHeJ_P0096979 Armcx2 protein_coding protein_coding MGP_C3HHeJ_T0096980.1 MGP_C3HHeJ_G0035754.1 mouse_genomes_project X 132089047 132090072 - Armcx2 protein_coding processed_transcript MGP_C3HHeJ_T0096981.1 MGP_C3HHeJ_G0035754.1 mouse_genomes_project X 132089822 132090503 - Armcx2 protein_coding processed_transcript MGP_C3HHeJ_T0096982.1 MGP_C3HHeJ_G0035754.1 mouse_genomes_project X 132090447 132091521 - Armcx2 protein_coding processed_transcript MGP_C3HHeJ_T0016497.1 MGP_C3HHeJ_G0014601.1 mouse_genomes_project X 130260467 130261255 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016377.1 MGP_C3HHeJ_G0014481.1 mouse_genomes_project X 101155169 101155441 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101022.1 MGP_C3HHeJ_G0039216.1 mouse_genomes_project X 53258810 53258881 - Snord61 snoRNA snoRNA MGP_C3HHeJ_T0097427.1 MGP_C3HHeJ_G0035880.1 mouse_genomes_project X 153435940 153439245 - MGP_C3HHeJ_P0097427 Sat1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097428.1 MGP_C3HHeJ_G0035880.1 mouse_genomes_project X 153435940 153439245 - MGP_C3HHeJ_P0097428 Sat1 protein_coding protein_coding MGP_C3HHeJ_T0097429.1 MGP_C3HHeJ_G0035880.1 mouse_genomes_project X 153436114 153439128 - Sat1 protein_coding retained_intron MGP_C3HHeJ_T0097430.1 MGP_C3HHeJ_G0035880.1 mouse_genomes_project X 153436114 153437700 - Sat1 protein_coding retained_intron MGP_C3HHeJ_T0097431.1 MGP_C3HHeJ_G0035880.1 mouse_genomes_project X 153436114 153436868 - Sat1 protein_coding retained_intron MGP_C3HHeJ_T0097432.1 MGP_C3HHeJ_G0035880.1 mouse_genomes_project X 153436123 153439141 - MGP_C3HHeJ_P0097432 Sat1 protein_coding protein_coding MGP_C3HHeJ_T0097433.1 MGP_C3HHeJ_G0035880.1 mouse_genomes_project X 153438250 153439123 - Sat1 protein_coding retained_intron MGP_C3HHeJ_T0009357.1 MGP_C3HHeJ_G0007494.1 mouse_genomes_project X 160176328 160187846 - Gm15205 lincRNA lincRNA MGP_C3HHeJ_T0097171.1 MGP_C3HHeJ_G0035823.1 mouse_genomes_project X 139690004 139799494 - MGP_C3HHeJ_P0097171 Gucy2f protein_coding protein_coding MGP_C3HHeJ_T0095911.1 MGP_C3HHeJ_G0035475.1 mouse_genomes_project X 69326552 69527326 + MGP_C3HHeJ_P0095911 protein_coding protein_coding MGP_C3HHeJ_T0099793.1 MGP_C3HHeJ_G0037987.1 mouse_genomes_project X 112523004 112523128 - Gm25366 snRNA snRNA MGP_C3HHeJ_T0095767.1 MGP_C3HHeJ_G0035424.1 mouse_genomes_project X 54795921 54807259 + MGP_C3HHeJ_P0095767 4930550L24Rik protein_coding protein_coding MGP_C3HHeJ_T0095768.1 MGP_C3HHeJ_G0035424.1 mouse_genomes_project X 54798072 54807259 + MGP_C3HHeJ_P0095768 4930550L24Rik protein_coding protein_coding MGP_C3HHeJ_T0016074.1 MGP_C3HHeJ_G0014178.1 mouse_genomes_project X 37290509 37291175 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095839.1 MGP_C3HHeJ_G0035453.1 mouse_genomes_project X 67171164 67279153 + MGP_C3HHeJ_P0095839 Mamld1 protein_coding protein_coding MGP_C3HHeJ_T0095840.1 MGP_C3HHeJ_G0035453.1 mouse_genomes_project X 67171164 67280492 + MGP_C3HHeJ_P0095840 Mamld1 protein_coding protein_coding MGP_C3HHeJ_T0016502.1 MGP_C3HHeJ_G0014606.1 mouse_genomes_project X 131812579 131812944 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016092.1 MGP_C3HHeJ_G0014196.1 mouse_genomes_project X 41866174 41866582 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016684.1 MGP_C3HHeJ_G0014788.1 mouse_genomes_project X 164926217 164927615 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016455.1 MGP_C3HHeJ_G0014559.1 mouse_genomes_project X 115034523 115034727 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095464.1 MGP_C3HHeJ_G0035324.1 mouse_genomes_project X 32474874 32476568 - MGP_C3HHeJ_P0095464 Gm9 protein_coding protein_coding MGP_C3HHeJ_T0097614.1 MGP_C3HHeJ_G0035926.1 mouse_genomes_project X 162853339 162867451 + MGP_C3HHeJ_P0097614 Piga protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097615.1 MGP_C3HHeJ_G0035926.1 mouse_genomes_project X 162853339 162867446 + MGP_C3HHeJ_P0097615 Piga protein_coding protein_coding MGP_C3HHeJ_T0097616.1 MGP_C3HHeJ_G0035926.1 mouse_genomes_project X 162853364 162867444 + MGP_C3HHeJ_P0097616 Piga protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097617.1 MGP_C3HHeJ_G0035926.1 mouse_genomes_project X 162853455 162867448 + MGP_C3HHeJ_P0097617 Piga protein_coding protein_coding MGP_C3HHeJ_T0097618.1 MGP_C3HHeJ_G0035926.1 mouse_genomes_project X 162856132 162865521 + MGP_C3HHeJ_P0097618 Piga protein_coding protein_coding MGP_C3HHeJ_T0097619.1 MGP_C3HHeJ_G0035926.1 mouse_genomes_project X 162859062 162865608 + Piga protein_coding retained_intron MGP_C3HHeJ_T0095557.1 MGP_C3HHeJ_G0035351.1 mouse_genomes_project X 37905534 38560905 - MGP_C3HHeJ_P0095557 Tenm1 protein_coding protein_coding MGP_C3HHeJ_T0095558.1 MGP_C3HHeJ_G0035351.1 mouse_genomes_project X 37905534 38560926 - MGP_C3HHeJ_P0095558 Tenm1 protein_coding protein_coding MGP_C3HHeJ_T0095559.1 MGP_C3HHeJ_G0035351.1 mouse_genomes_project X 37910059 38666923 - MGP_C3HHeJ_P0095559 Tenm1 protein_coding protein_coding MGP_C3HHeJ_T0095560.1 MGP_C3HHeJ_G0035351.1 mouse_genomes_project X 38210917 38823792 - Tenm1 protein_coding retained_intron MGP_C3HHeJ_T0095561.1 MGP_C3HHeJ_G0035351.1 mouse_genomes_project X 38290646 38823915 - Tenm1 protein_coding retained_intron MGP_C3HHeJ_T0095562.1 MGP_C3HHeJ_G0035351.1 mouse_genomes_project X 38716946 38823792 - Tenm1 protein_coding processed_transcript MGP_C3HHeJ_T0016560.1 MGP_C3HHeJ_G0014664.1 mouse_genomes_project X 139589985 139592132 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016237.1 MGP_C3HHeJ_G0014341.1 mouse_genomes_project X 74962055 74963010 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016247.1 MGP_C3HHeJ_G0014351.1 mouse_genomes_project X 76985420 76985645 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099784.1 MGP_C3HHeJ_G0037978.1 mouse_genomes_project X 102229210 102229321 - Gm22090 snRNA snRNA MGP_C3HHeJ_T0095291.1 MGP_C3HHeJ_G0035265.1 mouse_genomes_project X 11600636 11603313 + MGP_C3HHeJ_P0095291 protein_coding protein_coding MGP_C3HHeJ_T0011083.1 MGP_C3HHeJ_G0009216.1 mouse_genomes_project X 64031309 64031387 - Mir547 miRNA miRNA MGP_C3HHeJ_T0096871.1 MGP_C3HHeJ_G0035723.1 mouse_genomes_project X 117042776 117046516 + MGP_C3HHeJ_P0096871 Pabpc5 protein_coding protein_coding MGP_C3HHeJ_T0096872.1 MGP_C3HHeJ_G0035723.1 mouse_genomes_project X 117042805 117046360 + MGP_C3HHeJ_P0096872 Pabpc5 protein_coding protein_coding MGP_C3HHeJ_T0095894.1 MGP_C3HHeJ_G0035467.1 mouse_genomes_project X 68618374 68842783 - MGP_C3HHeJ_P0095894 Gabra3 protein_coding protein_coding MGP_C3HHeJ_T0095895.1 MGP_C3HHeJ_G0035467.1 mouse_genomes_project X 68620268 68843838 - MGP_C3HHeJ_P0095895 Gabra3 protein_coding protein_coding MGP_C3HHeJ_T0095896.1 MGP_C3HHeJ_G0035467.1 mouse_genomes_project X 68693322 68842817 - Gabra3 protein_coding processed_transcript MGP_C3HHeJ_T0097507.1 MGP_C3HHeJ_G0035898.1 mouse_genomes_project X 158445702 158461803 - MGP_C3HHeJ_P0097507 Pdha1 protein_coding protein_coding MGP_C3HHeJ_T0097508.1 MGP_C3HHeJ_G0035898.1 mouse_genomes_project X 158450784 158452459 - Pdha1 protein_coding retained_intron MGP_C3HHeJ_T0097509.1 MGP_C3HHeJ_G0035898.1 mouse_genomes_project X 158452781 158461699 - Pdha1 protein_coding retained_intron MGP_C3HHeJ_T0097510.1 MGP_C3HHeJ_G0035898.1 mouse_genomes_project X 158460286 158461746 - Pdha1 protein_coding processed_transcript MGP_C3HHeJ_T0016001.1 MGP_C3HHeJ_G0014105.1 mouse_genomes_project X 7848422 7849105 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011031.1 MGP_C3HHeJ_G0009164.1 mouse_genomes_project X 8617169 8617238 + Gm25246 miRNA miRNA MGP_C3HHeJ_T0015984.1 MGP_C3HHeJ_G0014088.1 mouse_genomes_project X 3920300 3921232 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096223.1 MGP_C3HHeJ_G0035524.1 mouse_genomes_project X 71143726 71153023 + MGP_C3HHeJ_P0096223 protein_coding protein_coding MGP_C3HHeJ_T0101070.1 MGP_C3HHeJ_G0039264.1 mouse_genomes_project X 162712946 162713076 + Gm22023 snoRNA snoRNA MGP_C3HHeJ_T0095071.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2430167 2433679 + Tfe3 protein_coding retained_intron MGP_C3HHeJ_T0095072.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2430193 2434375 + Tfe3 protein_coding processed_transcript MGP_C3HHeJ_T0095073.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2430265 2442809 + MGP_C3HHeJ_P0095073 Tfe3 protein_coding protein_coding MGP_C3HHeJ_T0095074.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2430271 2442806 + MGP_C3HHeJ_P0095074 Tfe3 protein_coding protein_coding MGP_C3HHeJ_T0095075.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2430283 2442808 + MGP_C3HHeJ_P0095075 Tfe3 protein_coding protein_coding MGP_C3HHeJ_T0095076.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2430302 2442806 + MGP_C3HHeJ_P0095076 Tfe3 protein_coding protein_coding MGP_C3HHeJ_T0095077.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2430304 2442808 + Tfe3 protein_coding retained_intron MGP_C3HHeJ_T0095078.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2430374 2442809 + MGP_C3HHeJ_P0095078 Tfe3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095079.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2431550 2434400 + MGP_C3HHeJ_P0095079 Tfe3 protein_coding protein_coding MGP_C3HHeJ_T0095080.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2431566 2442808 + MGP_C3HHeJ_P0095080 Tfe3 protein_coding protein_coding MGP_C3HHeJ_T0095081.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2431648 2442804 + MGP_C3HHeJ_P0095081 Tfe3 protein_coding protein_coding MGP_C3HHeJ_T0095082.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2431694 2442806 + MGP_C3HHeJ_P0095082 Tfe3 protein_coding protein_coding MGP_C3HHeJ_T0095083.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2432259 2442804 + Tfe3 protein_coding retained_intron MGP_C3HHeJ_T0095084.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2437037 2438926 + Tfe3 protein_coding retained_intron MGP_C3HHeJ_T0016165.1 MGP_C3HHeJ_G0014269.1 mouse_genomes_project X 59240735 59242578 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016358.1 MGP_C3HHeJ_G0014462.1 mouse_genomes_project X 100146904 100148212 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096837.1 MGP_C3HHeJ_G0035708.1 mouse_genomes_project X 109502121 109563497 + MGP_C3HHeJ_P0096837 Apool protein_coding protein_coding MGP_C3HHeJ_T0096838.1 MGP_C3HHeJ_G0035708.1 mouse_genomes_project X 109502135 109539276 + Apool protein_coding retained_intron MGP_C3HHeJ_T0096839.1 MGP_C3HHeJ_G0035708.1 mouse_genomes_project X 109502153 109563177 + MGP_C3HHeJ_P0096839 Apool protein_coding protein_coding MGP_C3HHeJ_T0097020.1 MGP_C3HHeJ_G0035770.1 mouse_genomes_project X 133237577 133242805 + MGP_C3HHeJ_P0097020 Bhlhb9 protein_coding protein_coding MGP_C3HHeJ_T0097021.1 MGP_C3HHeJ_G0035770.1 mouse_genomes_project X 133237579 133241053 + MGP_C3HHeJ_P0097021 Bhlhb9 protein_coding protein_coding MGP_C3HHeJ_T0097022.1 MGP_C3HHeJ_G0035770.1 mouse_genomes_project X 133237579 133242808 + MGP_C3HHeJ_P0097022 Bhlhb9 protein_coding protein_coding MGP_C3HHeJ_T0097023.1 MGP_C3HHeJ_G0035770.1 mouse_genomes_project X 133237709 133239197 + Bhlhb9 protein_coding retained_intron MGP_C3HHeJ_T0098224.1 MGP_C3HHeJ_G0036436.1 mouse_genomes_project X 73150122 73150230 - Gm26041 rRNA rRNA MGP_C3HHeJ_T0016685.1 MGP_C3HHeJ_G0014789.1 mouse_genomes_project X 164929599 164930425 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097515.1 MGP_C3HHeJ_G0035900.1 mouse_genomes_project X 158834818 158860473 + MGP_C3HHeJ_P0097515 Phka2 protein_coding protein_coding MGP_C3HHeJ_T0097516.1 MGP_C3HHeJ_G0035900.1 mouse_genomes_project X 158835080 158862509 + Phka2 protein_coding retained_intron MGP_C3HHeJ_T0097517.1 MGP_C3HHeJ_G0035900.1 mouse_genomes_project X 158835080 158923714 + MGP_C3HHeJ_P0097517 Phka2 protein_coding protein_coding MGP_C3HHeJ_T0097518.1 MGP_C3HHeJ_G0035900.1 mouse_genomes_project X 158835111 158886959 + MGP_C3HHeJ_P0097518 Phka2 protein_coding protein_coding MGP_C3HHeJ_T0097519.1 MGP_C3HHeJ_G0035900.1 mouse_genomes_project X 158835458 158916832 + MGP_C3HHeJ_P0097519 Phka2 protein_coding protein_coding MGP_C3HHeJ_T0097520.1 MGP_C3HHeJ_G0035900.1 mouse_genomes_project X 158856044 158869485 + Phka2 protein_coding processed_transcript MGP_C3HHeJ_T0097521.1 MGP_C3HHeJ_G0035900.1 mouse_genomes_project X 158856054 158869480 + Phka2 protein_coding processed_transcript MGP_C3HHeJ_T0097522.1 MGP_C3HHeJ_G0035900.1 mouse_genomes_project X 158863590 158916864 + Phka2 protein_coding processed_transcript MGP_C3HHeJ_T0097523.1 MGP_C3HHeJ_G0035900.1 mouse_genomes_project X 158885790 158890753 + Phka2 protein_coding processed_transcript MGP_C3HHeJ_T0101017.1 MGP_C3HHeJ_G0039211.1 mouse_genomes_project X 16626601 16626732 - Gm22592 snoRNA snoRNA MGP_C3HHeJ_T0099765.1 MGP_C3HHeJ_G0037959.1 mouse_genomes_project X 54261108 54261215 - Gm25851 snRNA snRNA MGP_C3HHeJ_T0095676.1 MGP_C3HHeJ_G0035389.1 mouse_genomes_project X 47727908 48076319 - MGP_C3HHeJ_P0095676 Gpc3 protein_coding protein_coding MGP_C3HHeJ_T0095677.1 MGP_C3HHeJ_G0035389.1 mouse_genomes_project X 47847137 48076348 - MGP_C3HHeJ_P0095677 Gpc3 protein_coding protein_coding MGP_C3HHeJ_T0011672.1 MGP_C3HHeJ_G0009805.1 mouse_genomes_project X 100715579 100715650 + Gm27798 misc_RNA misc_RNA MGP_C3HHeJ_T0102379.1 MGP_C3HHeJ_G0040342.1 mouse_genomes_project X 168530935 168538325 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016097.1 MGP_C3HHeJ_G0014201.1 mouse_genomes_project X 43155209 43157878 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095971.1 MGP_C3HHeJ_G0035492.1 mouse_genomes_project X 70035880 70039677 + MGP_C3HHeJ_P0095971 Ssr4 protein_coding protein_coding MGP_C3HHeJ_T0095972.1 MGP_C3HHeJ_G0035492.1 mouse_genomes_project X 70035914 70039679 + MGP_C3HHeJ_P0095972 Ssr4 protein_coding protein_coding MGP_C3HHeJ_T0095973.1 MGP_C3HHeJ_G0035492.1 mouse_genomes_project X 70036034 70037945 + Ssr4 protein_coding retained_intron MGP_C3HHeJ_T0095974.1 MGP_C3HHeJ_G0035492.1 mouse_genomes_project X 70036036 70039185 + Ssr4 protein_coding retained_intron MGP_C3HHeJ_T0095975.1 MGP_C3HHeJ_G0035492.1 mouse_genomes_project X 70036036 70039679 + Ssr4 protein_coding retained_intron MGP_C3HHeJ_T0095976.1 MGP_C3HHeJ_G0035492.1 mouse_genomes_project X 70036076 70039664 + Ssr4 protein_coding retained_intron MGP_C3HHeJ_T0095977.1 MGP_C3HHeJ_G0035492.1 mouse_genomes_project X 70036117 70039016 + Ssr4 protein_coding retained_intron MGP_C3HHeJ_T0095978.1 MGP_C3HHeJ_G0035492.1 mouse_genomes_project X 70037696 70039683 + Ssr4 protein_coding retained_intron MGP_C3HHeJ_T0099815.1 MGP_C3HHeJ_G0038009.1 mouse_genomes_project X 162696285 162696391 - Gm25367 snRNA snRNA MGP_C3HHeJ_T0005540.1 MGP_C3HHeJ_G0004658.1 mouse_genomes_project X 156018765 156049276 - Gm15169 antisense antisense MGP_C3HHeJ_T0005541.1 MGP_C3HHeJ_G0004658.1 mouse_genomes_project X 156036136 156049269 - Gm15169 antisense antisense MGP_C3HHeJ_T0009360.1 MGP_C3HHeJ_G0007497.1 mouse_genomes_project X 165316101 165322882 - Gm15230 lincRNA lincRNA MGP_C3HHeJ_T0016691.1 MGP_C3HHeJ_G0014795.1 mouse_genomes_project X 166591506 166591975 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016370.1 MGP_C3HHeJ_G0014474.1 mouse_genomes_project X 100768358 100769646 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011052.1 MGP_C3HHeJ_G0009185.1 mouse_genomes_project X 48220102 48220185 - Mir18b miRNA miRNA MGP_C3HHeJ_T0015993.1 MGP_C3HHeJ_G0014097.1 mouse_genomes_project X 6585368 6585491 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095825.1 MGP_C3HHeJ_G0035448.1 mouse_genomes_project X 65416032 65934987 + MGP_C3HHeJ_P0095825 Aff2 protein_coding protein_coding MGP_C3HHeJ_T0095826.1 MGP_C3HHeJ_G0035448.1 mouse_genomes_project X 65416243 65609571 + Aff2 protein_coding processed_transcript MGP_C3HHeJ_T0095827.1 MGP_C3HHeJ_G0035448.1 mouse_genomes_project X 65416438 65850686 + Aff2 protein_coding processed_transcript MGP_C3HHeJ_T0095828.1 MGP_C3HHeJ_G0035448.1 mouse_genomes_project X 65416530 65934781 + MGP_C3HHeJ_P0095828 Aff2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095829.1 MGP_C3HHeJ_G0035448.1 mouse_genomes_project X 65923627 65933726 + Aff2 protein_coding retained_intron MGP_C3HHeJ_T0096544.1 MGP_C3HHeJ_G0035625.1 mouse_genomes_project X 97623966 97626568 + Gdpd2 protein_coding processed_transcript MGP_C3HHeJ_T0096545.1 MGP_C3HHeJ_G0035625.1 mouse_genomes_project X 97624031 97629332 + Gdpd2 protein_coding retained_intron MGP_C3HHeJ_T0096546.1 MGP_C3HHeJ_G0035625.1 mouse_genomes_project X 97624035 97633013 + MGP_C3HHeJ_P0096546 Gdpd2 protein_coding protein_coding MGP_C3HHeJ_T0096547.1 MGP_C3HHeJ_G0035625.1 mouse_genomes_project X 97624279 97633013 + MGP_C3HHeJ_P0096547 Gdpd2 protein_coding protein_coding MGP_C3HHeJ_T0096548.1 MGP_C3HHeJ_G0035625.1 mouse_genomes_project X 97630458 97633014 + Gdpd2 protein_coding retained_intron MGP_C3HHeJ_T0097005.1 MGP_C3HHeJ_G0035765.1 mouse_genomes_project X 132961774 133004530 - MGP_C3HHeJ_P0097005 Tcp11x2 protein_coding protein_coding MGP_C3HHeJ_T0011086.1 MGP_C3HHeJ_G0009219.1 mouse_genomes_project X 68445092 68445174 - Mir224 miRNA miRNA MGP_C3HHeJ_T0096768.1 MGP_C3HHeJ_G0035684.1 mouse_genomes_project X 103863048 103995752 + MGP_C3HHeJ_P0096768 Gm5127 protein_coding protein_coding MGP_C3HHeJ_T0096769.1 MGP_C3HHeJ_G0035684.1 mouse_genomes_project X 103863048 103995057 + MGP_C3HHeJ_P0096769 Gm5127 protein_coding protein_coding MGP_C3HHeJ_T0096937.1 MGP_C3HHeJ_G0035744.1 mouse_genomes_project X 131653224 131709331 + MGP_C3HHeJ_P0096937 Drp2 protein_coding protein_coding MGP_C3HHeJ_T0096938.1 MGP_C3HHeJ_G0035744.1 mouse_genomes_project X 131653301 131713200 + MGP_C3HHeJ_P0096938 Drp2 protein_coding protein_coding MGP_C3HHeJ_T0096939.1 MGP_C3HHeJ_G0035744.1 mouse_genomes_project X 131653448 131710243 + MGP_C3HHeJ_P0096939 Drp2 protein_coding protein_coding MGP_C3HHeJ_T0096940.1 MGP_C3HHeJ_G0035744.1 mouse_genomes_project X 131653459 131709638 + MGP_C3HHeJ_P0096940 Drp2 protein_coding protein_coding MGP_C3HHeJ_T0096941.1 MGP_C3HHeJ_G0035744.1 mouse_genomes_project X 131673532 131692042 + Drp2 protein_coding processed_transcript MGP_C3HHeJ_T0096942.1 MGP_C3HHeJ_G0035744.1 mouse_genomes_project X 131673586 131710031 + Drp2 protein_coding retained_intron MGP_C3HHeJ_T0098236.1 MGP_C3HHeJ_G0036448.1 mouse_genomes_project X 162560553 162560674 + n-R5s18 rRNA rRNA MGP_C3HHeJ_T0096549.1 MGP_C3HHeJ_G0035626.1 mouse_genomes_project X 97655118 97711918 + MGP_C3HHeJ_P0096549 Dlg3 protein_coding protein_coding MGP_C3HHeJ_T0096550.1 MGP_C3HHeJ_G0035626.1 mouse_genomes_project X 97655119 97711920 + MGP_C3HHeJ_P0096550 Dlg3 protein_coding protein_coding MGP_C3HHeJ_T0096551.1 MGP_C3HHeJ_G0035626.1 mouse_genomes_project X 97655145 97711920 + MGP_C3HHeJ_P0096551 Dlg3 protein_coding protein_coding MGP_C3HHeJ_T0096552.1 MGP_C3HHeJ_G0035626.1 mouse_genomes_project X 97655391 97711922 + Dlg3 protein_coding retained_intron MGP_C3HHeJ_T0096553.1 MGP_C3HHeJ_G0035626.1 mouse_genomes_project X 97662655 97711920 + MGP_C3HHeJ_P0096553 Dlg3 protein_coding protein_coding MGP_C3HHeJ_T0096554.1 MGP_C3HHeJ_G0035626.1 mouse_genomes_project X 97665177 97711920 + Dlg3 protein_coding processed_transcript MGP_C3HHeJ_T0096555.1 MGP_C3HHeJ_G0035626.1 mouse_genomes_project X 97685766 97700162 + Dlg3 protein_coding processed_transcript MGP_C3HHeJ_T0096556.1 MGP_C3HHeJ_G0035626.1 mouse_genomes_project X 97701548 97708342 + Dlg3 protein_coding processed_transcript MGP_C3HHeJ_T0016172.1 MGP_C3HHeJ_G0014276.1 mouse_genomes_project X 62074323 62076451 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097422.1 MGP_C3HHeJ_G0035875.1 mouse_genomes_project X 152455999 152460167 - MGP_C3HHeJ_P0097422 4930524N10Rik protein_coding protein_coding MGP_C3HHeJ_T0016194.1 MGP_C3HHeJ_G0014298.1 mouse_genomes_project X 66696737 66697282 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009361.1 MGP_C3HHeJ_G0007498.1 mouse_genomes_project X 165529981 165537510 - Gm8817 lincRNA lincRNA MGP_C3HHeJ_T0009362.1 MGP_C3HHeJ_G0007498.1 mouse_genomes_project X 165530123 165537510 - Gm8817 lincRNA lincRNA MGP_C3HHeJ_T0009363.1 MGP_C3HHeJ_G0007498.1 mouse_genomes_project X 165530339 165535519 - Gm8817 lincRNA lincRNA MGP_C3HHeJ_T0097172.1 MGP_C3HHeJ_G0035824.1 mouse_genomes_project X 139834284 139847968 + MGP_C3HHeJ_P0097172 Nxt2 protein_coding protein_coding MGP_C3HHeJ_T0097173.1 MGP_C3HHeJ_G0035824.1 mouse_genomes_project X 139835450 139847968 + MGP_C3HHeJ_P0097173 Nxt2 protein_coding protein_coding MGP_C3HHeJ_T0097174.1 MGP_C3HHeJ_G0035824.1 mouse_genomes_project X 139835690 139847968 + MGP_C3HHeJ_P0097174 Nxt2 protein_coding protein_coding MGP_C3HHeJ_T0097175.1 MGP_C3HHeJ_G0035824.1 mouse_genomes_project X 139835740 139837620 + Nxt2 protein_coding retained_intron MGP_C3HHeJ_T0097176.1 MGP_C3HHeJ_G0035824.1 mouse_genomes_project X 139836634 139847969 + MGP_C3HHeJ_P0097176 Nxt2 protein_coding protein_coding MGP_C3HHeJ_T0016185.1 MGP_C3HHeJ_G0014289.1 mouse_genomes_project X 64616546 64616894 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095854.1 MGP_C3HHeJ_G0035455.1 mouse_genomes_project X 67528076 67557052 + MGP_C3HHeJ_P0095854 Mtmr1 protein_coding protein_coding MGP_C3HHeJ_T0095855.1 MGP_C3HHeJ_G0035455.1 mouse_genomes_project X 67528076 67587402 + MGP_C3HHeJ_P0095855 Mtmr1 protein_coding protein_coding MGP_C3HHeJ_T0095856.1 MGP_C3HHeJ_G0035455.1 mouse_genomes_project X 67528253 67562617 + MGP_C3HHeJ_P0095856 Mtmr1 protein_coding protein_coding MGP_C3HHeJ_T0095857.1 MGP_C3HHeJ_G0035455.1 mouse_genomes_project X 67533159 67557030 + MGP_C3HHeJ_P0095857 Mtmr1 protein_coding protein_coding MGP_C3HHeJ_T0095858.1 MGP_C3HHeJ_G0035455.1 mouse_genomes_project X 67533159 67557030 + MGP_C3HHeJ_P0095858 Mtmr1 protein_coding protein_coding MGP_C3HHeJ_T0095859.1 MGP_C3HHeJ_G0035455.1 mouse_genomes_project X 67533159 67557030 + MGP_C3HHeJ_P0095859 Mtmr1 protein_coding protein_coding MGP_C3HHeJ_T0095860.1 MGP_C3HHeJ_G0035455.1 mouse_genomes_project X 67559472 67560866 + Mtmr1 protein_coding retained_intron MGP_C3HHeJ_T0095861.1 MGP_C3HHeJ_G0035455.1 mouse_genomes_project X 67559973 67561247 + Mtmr1 protein_coding retained_intron MGP_C3HHeJ_T0095862.1 MGP_C3HHeJ_G0035455.1 mouse_genomes_project X 67562310 67586869 + Mtmr1 protein_coding retained_intron MGP_C3HHeJ_T0097653.1 MGP_C3HHeJ_G0035936.1 mouse_genomes_project X 164885343 164898159 + MGP_C3HHeJ_P0097653 Trappc2 protein_coding protein_coding MGP_C3HHeJ_T0097654.1 MGP_C3HHeJ_G0035936.1 mouse_genomes_project X 164885545 164896551 + Trappc2 protein_coding retained_intron MGP_C3HHeJ_T0097655.1 MGP_C3HHeJ_G0035936.1 mouse_genomes_project X 164885545 164898157 + MGP_C3HHeJ_P0097655 Trappc2 protein_coding protein_coding MGP_C3HHeJ_T0097656.1 MGP_C3HHeJ_G0035936.1 mouse_genomes_project X 164890072 164898159 + MGP_C3HHeJ_P0097656 Trappc2 protein_coding protein_coding MGP_C3HHeJ_T0011046.1 MGP_C3HHeJ_G0009179.1 mouse_genomes_project X 47837607 47837668 - Mir6384 miRNA miRNA MGP_C3HHeJ_T0016403.1 MGP_C3HHeJ_G0014507.1 mouse_genomes_project X 104581412 104582360 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016661.1 MGP_C3HHeJ_G0014765.1 mouse_genomes_project X 159045864 159045994 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059993.1 MGP_C3HHeJ_G0026844.1 mouse_genomes_project 3 28581374 28639093 + MGP_C3HHeJ_P0059993 Prkci protein_coding protein_coding MGP_C3HHeJ_T0059994.1 MGP_C3HHeJ_G0026844.1 mouse_genomes_project 3 28590820 28620750 + MGP_C3HHeJ_P0059994 Prkci protein_coding protein_coding MGP_C3HHeJ_T0059995.1 MGP_C3HHeJ_G0026844.1 mouse_genomes_project 3 28617958 28625598 + Prkci protein_coding processed_transcript MGP_C3HHeJ_T0059996.1 MGP_C3HHeJ_G0026844.1 mouse_genomes_project 3 28624650 28627425 + MGP_C3HHeJ_P0059996 Prkci protein_coding protein_coding MGP_C3HHeJ_T0059997.1 MGP_C3HHeJ_G0026844.1 mouse_genomes_project 3 28624715 28626170 + Prkci protein_coding retained_intron MGP_C3HHeJ_T0001112.1 MGP_C3HHeJ_G0001046.1 mouse_genomes_project 3 32426906 32427020 + TEC TEC MGP_C3HHeJ_T0001095.1 MGP_C3HHeJ_G0001029.1 mouse_genomes_project 3 27797119 27799232 - TEC TEC MGP_C3HHeJ_T0007491.1 MGP_C3HHeJ_G0006129.1 mouse_genomes_project 3 74766608 74776407 - Platr10 lincRNA lincRNA MGP_C3HHeJ_T0007492.1 MGP_C3HHeJ_G0006129.1 mouse_genomes_project 3 74767002 74767821 - Platr10 lincRNA lincRNA MGP_C3HHeJ_T0061791.1 MGP_C3HHeJ_G0027218.1 mouse_genomes_project 3 92439880 92442218 - MGP_C3HHeJ_P0061791 Smcp protein_coding protein_coding MGP_C3HHeJ_T0061792.1 MGP_C3HHeJ_G0027218.1 mouse_genomes_project 3 92439880 92444970 - MGP_C3HHeJ_P0061792 Smcp protein_coding protein_coding MGP_C3HHeJ_T0060516.1 MGP_C3HHeJ_G0026938.1 mouse_genomes_project 3 53527559 53551454 + MGP_C3HHeJ_P0060516 Sohlh2 protein_coding protein_coding MGP_C3HHeJ_T0014127.1 MGP_C3HHeJ_G0012231.1 mouse_genomes_project 3 124445290 124447420 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007670.1 MGP_C3HHeJ_G0006270.1 mouse_genomes_project 3 146493757 146495292 + Gm43447 lincRNA lincRNA MGP_C3HHeJ_T0007461.1 MGP_C3HHeJ_G0006105.1 mouse_genomes_project 3 51065508 51075353 - Gm30292 lincRNA lincRNA MGP_C3HHeJ_T0007553.1 MGP_C3HHeJ_G0006174.1 mouse_genomes_project 3 101049621 101050926 + Gm43121 lincRNA lincRNA MGP_C3HHeJ_T0014204.1 MGP_C3HHeJ_G0012308.1 mouse_genomes_project 3 149179117 149179796 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059693.1 MGP_C3HHeJ_G0026773.1 mouse_genomes_project 3 7511697 7515776 - MGP_C3HHeJ_P0059693 Pmp2 protein_coding protein_coding MGP_C3HHeJ_T0007394.1 MGP_C3HHeJ_G0006052.1 mouse_genomes_project 3 18603541 18604260 - Gm29137 lincRNA lincRNA MGP_C3HHeJ_T0007360.1 MGP_C3HHeJ_G0006032.1 mouse_genomes_project 3 5110574 5143461 - 1700010I02Rik lincRNA lincRNA MGP_C3HHeJ_T0007361.1 MGP_C3HHeJ_G0006032.1 mouse_genomes_project 3 5110574 5143454 - 1700010I02Rik lincRNA lincRNA MGP_C3HHeJ_T0100549.1 MGP_C3HHeJ_G0038743.1 mouse_genomes_project 3 81121546 81121686 + Gm22531 snoRNA snoRNA MGP_C3HHeJ_T0061092.1 MGP_C3HHeJ_G0027077.1 mouse_genomes_project 3 86804344 86817344 + MGP_C3HHeJ_P0061092 Cd5l protein_coding protein_coding MGP_C3HHeJ_T0064040.1 MGP_C3HHeJ_G0027698.1 mouse_genomes_project 3 156497672 156508586 + MGP_C3HHeJ_P0064040 Asb17 protein_coding protein_coding MGP_C3HHeJ_T0064041.1 MGP_C3HHeJ_G0027698.1 mouse_genomes_project 3 156497729 156507115 + MGP_C3HHeJ_P0064041 Asb17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013961.1 MGP_C3HHeJ_G0012065.1 mouse_genomes_project 3 70847962 70848121 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001325.1 MGP_C3HHeJ_G0001256.1 mouse_genomes_project 3 137321474 137324170 - TEC TEC MGP_C3HHeJ_T0063055.1 MGP_C3HHeJ_G0027519.1 mouse_genomes_project 3 118044525 118118521 - MGP_C3HHeJ_P0063055 Agl protein_coding protein_coding MGP_C3HHeJ_T0063056.1 MGP_C3HHeJ_G0027519.1 mouse_genomes_project 3 118051217 118117777 - MGP_C3HHeJ_P0063056 Agl protein_coding protein_coding MGP_C3HHeJ_T0063057.1 MGP_C3HHeJ_G0027519.1 mouse_genomes_project 3 118051761 118089702 - MGP_C3HHeJ_P0063057 Agl protein_coding protein_coding MGP_C3HHeJ_T0063058.1 MGP_C3HHeJ_G0027519.1 mouse_genomes_project 3 118056769 118118397 - MGP_C3HHeJ_P0063058 Agl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063059.1 MGP_C3HHeJ_G0027519.1 mouse_genomes_project 3 118062959 118118484 - MGP_C3HHeJ_P0063059 Agl protein_coding protein_coding MGP_C3HHeJ_T0063060.1 MGP_C3HHeJ_G0027519.1 mouse_genomes_project 3 118088464 118090202 - MGP_C3HHeJ_P0063060 Agl protein_coding protein_coding MGP_C3HHeJ_T0063061.1 MGP_C3HHeJ_G0027519.1 mouse_genomes_project 3 118099078 118118386 - Agl protein_coding retained_intron MGP_C3HHeJ_T0063062.1 MGP_C3HHeJ_G0027519.1 mouse_genomes_project 3 118100414 118118206 - MGP_C3HHeJ_P0063062 Agl protein_coding protein_coding MGP_C3HHeJ_T0001142.1 MGP_C3HHeJ_G0001076.1 mouse_genomes_project 3 47306630 47307696 + TEC TEC MGP_C3HHeJ_T0001146.1 MGP_C3HHeJ_G0001080.1 mouse_genomes_project 3 48891968 48895672 - TEC TEC MGP_C3HHeJ_T0007580.1 MGP_C3HHeJ_G0006196.1 mouse_genomes_project 3 109363374 109365099 + lincRNA lincRNA MGP_C3HHeJ_T0060213.1 MGP_C3HHeJ_G0026883.1 mouse_genomes_project 3 35155256 35160195 - MGP_C3HHeJ_P0060213 Cetn4 protein_coding protein_coding MGP_C3HHeJ_T0060214.1 MGP_C3HHeJ_G0026883.1 mouse_genomes_project 3 35156120 35160195 - MGP_C3HHeJ_P0060214 Cetn4 protein_coding protein_coding MGP_C3HHeJ_T0060215.1 MGP_C3HHeJ_G0026883.1 mouse_genomes_project 3 35156122 35160195 - MGP_C3HHeJ_P0060215 Cetn4 protein_coding protein_coding MGP_C3HHeJ_T0060216.1 MGP_C3HHeJ_G0026883.1 mouse_genomes_project 3 35156257 35160169 - MGP_C3HHeJ_P0060216 Cetn4 protein_coding protein_coding MGP_C3HHeJ_T0060217.1 MGP_C3HHeJ_G0026883.1 mouse_genomes_project 3 35157216 35160457 - MGP_C3HHeJ_P0060217 Cetn4 protein_coding protein_coding MGP_C3HHeJ_T0001193.1 MGP_C3HHeJ_G0001125.1 mouse_genomes_project 3 57132041 57133147 + TEC TEC MGP_C3HHeJ_T0061889.1 MGP_C3HHeJ_G0027262.1 mouse_genomes_project 3 94729367 94729451 + MGP_C3HHeJ_P0061889 protein_coding protein_coding MGP_C3HHeJ_T0061790.1 MGP_C3HHeJ_G0027217.1 mouse_genomes_project 3 92425346 92428180 - MGP_C3HHeJ_P0061790 Ivl protein_coding protein_coding MGP_C3HHeJ_T0059791.1 MGP_C3HHeJ_G0026807.1 mouse_genomes_project 3 16920284 16939059 - MGP_C3HHeJ_P0059791 1700064H15Rik protein_coding protein_coding MGP_C3HHeJ_T0101195.1 MGP_C3HHeJ_G0039335.1 mouse_genomes_project 3 94495665 94496439 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101196.1 MGP_C3HHeJ_G0039335.1 mouse_genomes_project 3 94495856 94496273 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0099301.1 MGP_C3HHeJ_G0037495.1 mouse_genomes_project 3 117730574 117730750 - Gm22361 snRNA snRNA MGP_C3HHeJ_T0007698.1 MGP_C3HHeJ_G0006289.1 mouse_genomes_project 3 156441746 156444529 - 5730460C07Rik lincRNA lincRNA MGP_C3HHeJ_T0064099.1 MGP_C3HHeJ_G0027707.1 mouse_genomes_project 3 157471552 157755838 - MGP_C3HHeJ_P0064099 Tnni3k protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064100.1 MGP_C3HHeJ_G0027707.1 mouse_genomes_project 3 157471560 157755838 - MGP_C3HHeJ_P0064100 Tnni3k protein_coding protein_coding MGP_C3HHeJ_T0064101.1 MGP_C3HHeJ_G0027707.1 mouse_genomes_project 3 157724980 157755781 - Tnni3k protein_coding retained_intron MGP_C3HHeJ_T0062236.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 96999788 97011598 + MGP_C3HHeJ_P0062236 Pias3 protein_coding protein_coding MGP_C3HHeJ_T0062237.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 96999846 97011110 + MGP_C3HHeJ_P0062237 Pias3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062238.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 97000479 97003079 + MGP_C3HHeJ_P0062238 Pias3 protein_coding protein_coding MGP_C3HHeJ_T0062239.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 97000486 97011706 + MGP_C3HHeJ_P0062239 Pias3 protein_coding protein_coding MGP_C3HHeJ_T0062240.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 97000520 97011609 + MGP_C3HHeJ_P0062240 Pias3 protein_coding protein_coding MGP_C3HHeJ_T0062241.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 97000536 97003370 + Pias3 protein_coding retained_intron MGP_C3HHeJ_T0062242.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 97000597 97005080 + MGP_C3HHeJ_P0062242 Pias3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062243.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 97003865 97009456 + Pias3 protein_coding retained_intron MGP_C3HHeJ_T0062244.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 97004741 97009521 + Pias3 protein_coding retained_intron MGP_C3HHeJ_T0062245.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 97009800 97010769 + MGP_C3HHeJ_P0062245 Pias3 protein_coding protein_coding MGP_C3HHeJ_T0004167.1 MGP_C3HHeJ_G0003664.1 mouse_genomes_project 3 51390165 51393182 - Gm43803 antisense antisense MGP_C3HHeJ_T0004168.1 MGP_C3HHeJ_G0003664.1 mouse_genomes_project 3 51390182 51391486 - Gm43803 antisense antisense MGP_C3HHeJ_T0001156.1 MGP_C3HHeJ_G0001090.1 mouse_genomes_project 3 49765872 49767981 - TEC TEC MGP_C3HHeJ_T0017796.1 MGP_C3HHeJ_G0015291.1 mouse_genomes_project 3 151434254 151436200 + Gm43572 processed_transcript processed_transcript MGP_C3HHeJ_T0010481.1 MGP_C3HHeJ_G0008614.1 mouse_genomes_project 3 155939985 155940097 + Gm27405 miRNA miRNA MGP_C3HHeJ_T0062753.1 MGP_C3HHeJ_G0027456.1 mouse_genomes_project 3 108629949 108644599 - MGP_C3HHeJ_P0062753 Ahcyl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062754.1 MGP_C3HHeJ_G0027456.1 mouse_genomes_project 3 108629951 108663483 - MGP_C3HHeJ_P0062754 Ahcyl1 protein_coding protein_coding MGP_C3HHeJ_T0062755.1 MGP_C3HHeJ_G0027456.1 mouse_genomes_project 3 108630784 108632428 - Ahcyl1 protein_coding processed_transcript MGP_C3HHeJ_T0062756.1 MGP_C3HHeJ_G0027456.1 mouse_genomes_project 3 108631314 108637406 - Ahcyl1 protein_coding retained_intron MGP_C3HHeJ_T0062757.1 MGP_C3HHeJ_G0027456.1 mouse_genomes_project 3 108632223 108634315 - Ahcyl1 protein_coding retained_intron MGP_C3HHeJ_T0062758.1 MGP_C3HHeJ_G0027456.1 mouse_genomes_project 3 108635081 108636341 - Ahcyl1 protein_coding retained_intron MGP_C3HHeJ_T0062759.1 MGP_C3HHeJ_G0027456.1 mouse_genomes_project 3 108637979 108662886 - MGP_C3HHeJ_P0062759 Ahcyl1 protein_coding protein_coding MGP_C3HHeJ_T0062760.1 MGP_C3HHeJ_G0027456.1 mouse_genomes_project 3 108638567 108663428 - Ahcyl1 protein_coding retained_intron MGP_C3HHeJ_T0060366.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49432863 49529080 - MGP_C3HHeJ_P0060366 Elf2 protein_coding protein_coding MGP_C3HHeJ_T0060367.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49435382 49510840 - MGP_C3HHeJ_P0060367 Elf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060368.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49435383 49529061 - MGP_C3HHeJ_P0060368 Elf2 protein_coding protein_coding MGP_C3HHeJ_T0060369.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49435815 49459373 - MGP_C3HHeJ_P0060369 Elf2 protein_coding protein_coding MGP_C3HHeJ_T0060370.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49435817 49459533 - MGP_C3HHeJ_P0060370 Elf2 protein_coding protein_coding MGP_C3HHeJ_T0060371.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49435817 49459472 - MGP_C3HHeJ_P0060371 Elf2 protein_coding protein_coding MGP_C3HHeJ_T0060372.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49435837 49510798 - MGP_C3HHeJ_P0060372 Elf2 protein_coding protein_coding MGP_C3HHeJ_T0060373.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49438835 49440391 - Elf2 protein_coding retained_intron MGP_C3HHeJ_T0060374.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49444995 49529075 - MGP_C3HHeJ_P0060374 Elf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060375.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49444995 49459326 - MGP_C3HHeJ_P0060375 Elf2 protein_coding protein_coding MGP_C3HHeJ_T0060376.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49445011 49528978 - Elf2 protein_coding processed_transcript MGP_C3HHeJ_T0060377.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49445011 49459382 - MGP_C3HHeJ_P0060377 Elf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060378.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49445175 49459402 - MGP_C3HHeJ_P0060378 Elf2 protein_coding protein_coding MGP_C3HHeJ_T0059918.1 MGP_C3HHeJ_G0026832.1 mouse_genomes_project 3 26348203 26350183 + MGP_C3HHeJ_P0059918 Rpl22l1 protein_coding protein_coding MGP_C3HHeJ_T0059919.1 MGP_C3HHeJ_G0026832.1 mouse_genomes_project 3 26348236 26350192 + MGP_C3HHeJ_P0059919 Rpl22l1 protein_coding protein_coding MGP_C3HHeJ_T0059920.1 MGP_C3HHeJ_G0026832.1 mouse_genomes_project 3 26348275 26350183 + Rpl22l1 protein_coding retained_intron MGP_C3HHeJ_T0059921.1 MGP_C3HHeJ_G0026832.1 mouse_genomes_project 3 26348277 26350190 + MGP_C3HHeJ_P0059921 Rpl22l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059922.1 MGP_C3HHeJ_G0026832.1 mouse_genomes_project 3 26348332 26349468 + Rpl22l1 protein_coding processed_transcript MGP_C3HHeJ_T0059923.1 MGP_C3HHeJ_G0026832.1 mouse_genomes_project 3 26348364 26350062 + Rpl22l1 protein_coding processed_transcript MGP_C3HHeJ_T0059924.1 MGP_C3HHeJ_G0026832.1 mouse_genomes_project 3 26348430 26350183 + Rpl22l1 protein_coding processed_transcript MGP_C3HHeJ_T0059925.1 MGP_C3HHeJ_G0026832.1 mouse_genomes_project 3 26349225 26350183 + Rpl22l1 protein_coding retained_intron MGP_C3HHeJ_T0059926.1 MGP_C3HHeJ_G0026832.1 mouse_genomes_project 3 26349266 26350184 + Rpl22l1 protein_coding retained_intron MGP_C3HHeJ_T0101974.1 MGP_C3HHeJ_G0039939.1 mouse_genomes_project 3 108880024 108884492 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004245.1 MGP_C3HHeJ_G0003718.1 mouse_genomes_project 3 103440289 103458377 - Tspan2os antisense antisense MGP_C3HHeJ_T0098413.1 MGP_C3HHeJ_G0036618.1 mouse_genomes_project 3 94659735 94660990 - Gm43768 sense_intronic sense_intronic MGP_C3HHeJ_T0062956.1 MGP_C3HHeJ_G0027498.1 mouse_genomes_project 3 111314413 111319303 - MGP_C3HHeJ_P0062956 Prmt6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062957.1 MGP_C3HHeJ_G0027498.1 mouse_genomes_project 3 111314416 111319298 - MGP_C3HHeJ_P0062957 Prmt6 protein_coding protein_coding MGP_C3HHeJ_T0062958.1 MGP_C3HHeJ_G0027498.1 mouse_genomes_project 3 111316853 111319303 - MGP_C3HHeJ_P0062958 Prmt6 protein_coding protein_coding MGP_C3HHeJ_T0013918.1 MGP_C3HHeJ_G0012022.1 mouse_genomes_project 3 58831564 58832300 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062246.1 MGP_C3HHeJ_G0027334.1 mouse_genomes_project 3 97011702 97014183 - MGP_C3HHeJ_P0062246 Nudt17 protein_coding protein_coding MGP_C3HHeJ_T0062247.1 MGP_C3HHeJ_G0027334.1 mouse_genomes_project 3 97011703 97012879 - Nudt17 protein_coding retained_intron MGP_C3HHeJ_T0062248.1 MGP_C3HHeJ_G0027334.1 mouse_genomes_project 3 97011704 97014198 - MGP_C3HHeJ_P0062248 Nudt17 protein_coding protein_coding MGP_C3HHeJ_T0062249.1 MGP_C3HHeJ_G0027334.1 mouse_genomes_project 3 97011803 97014175 - MGP_C3HHeJ_P0062249 Nudt17 protein_coding protein_coding MGP_C3HHeJ_T0013871.1 MGP_C3HHeJ_G0011975.1 mouse_genomes_project 3 44666314 44666556 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007421.1 MGP_C3HHeJ_G0006077.1 mouse_genomes_project 3 34325214 34332213 - Gm11548 lincRNA lincRNA MGP_C3HHeJ_T0014185.1 MGP_C3HHeJ_G0012289.1 mouse_genomes_project 3 142183237 142184618 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011448.1 MGP_C3HHeJ_G0009581.1 mouse_genomes_project 3 82928063 82928361 - Gm22342 misc_RNA misc_RNA MGP_C3HHeJ_T0004253.1 MGP_C3HHeJ_G0003723.1 mouse_genomes_project 3 105847467 105857385 + Gm42956 antisense antisense MGP_C3HHeJ_T0060700.1 MGP_C3HHeJ_G0026981.1 mouse_genomes_project 3 62597642 62654598 + MGP_C3HHeJ_P0060700 Gmps protein_coding protein_coding MGP_C3HHeJ_T0001258.1 MGP_C3HHeJ_G0001190.1 mouse_genomes_project 3 117861613 117863972 - TEC TEC MGP_C3HHeJ_T0099275.1 MGP_C3HHeJ_G0037469.1 mouse_genomes_project 3 88487415 88487522 - Gm26465 snRNA snRNA MGP_C3HHeJ_T0013823.1 MGP_C3HHeJ_G0011927.1 mouse_genomes_project 3 28559191 28559654 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059708.1 MGP_C3HHeJ_G0026779.1 mouse_genomes_project 3 7658888 7673837 - MGP_C3HHeJ_P0059708 Gm38303 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099316.1 MGP_C3HHeJ_G0037510.1 mouse_genomes_project 3 148738598 148738701 - Gm22078 snRNA snRNA MGP_C3HHeJ_T0098420.1 MGP_C3HHeJ_G0036625.1 mouse_genomes_project 3 101247474 101251116 - Gm43462 sense_intronic sense_intronic MGP_C3HHeJ_T0060210.1 MGP_C3HHeJ_G0026882.1 mouse_genomes_project 3 35069345 35079692 - MGP_C3HHeJ_P0060210 Il21 protein_coding protein_coding MGP_C3HHeJ_T0060211.1 MGP_C3HHeJ_G0026882.1 mouse_genomes_project 3 35072432 35079639 - MGP_C3HHeJ_P0060211 Il21 protein_coding protein_coding MGP_C3HHeJ_T0060212.1 MGP_C3HHeJ_G0026882.1 mouse_genomes_project 3 35077368 35079710 - Il21 protein_coding retained_intron MGP_C3HHeJ_T0061669.1 MGP_C3HHeJ_G0027173.1 mouse_genomes_project 3 89834290 89840303 - MGP_C3HHeJ_P0061669 Creb3l4 protein_coding protein_coding MGP_C3HHeJ_T0061670.1 MGP_C3HHeJ_G0027173.1 mouse_genomes_project 3 89834360 89839934 - MGP_C3HHeJ_P0061670 Creb3l4 protein_coding protein_coding MGP_C3HHeJ_T0100564.1 MGP_C3HHeJ_G0038758.1 mouse_genomes_project 3 99669174 99669303 - Gm22341 snoRNA snoRNA MGP_C3HHeJ_T0059742.1 MGP_C3HHeJ_G0026789.1 mouse_genomes_project 3 12070551 12092569 + MGP_C3HHeJ_P0059742 Car13 protein_coding protein_coding MGP_C3HHeJ_T0061100.1 MGP_C3HHeJ_G0027079.1 mouse_genomes_project 3 86890054 86922794 + MGP_C3HHeJ_P0061100 Fcrl5 protein_coding protein_coding MGP_C3HHeJ_T0061101.1 MGP_C3HHeJ_G0027079.1 mouse_genomes_project 3 86890094 86977475 + MGP_C3HHeJ_P0061101 Fcrl5 protein_coding protein_coding MGP_C3HHeJ_T0061102.1 MGP_C3HHeJ_G0027079.1 mouse_genomes_project 3 86890166 86912397 + MGP_C3HHeJ_P0061102 Fcrl5 protein_coding protein_coding MGP_C3HHeJ_T0061103.1 MGP_C3HHeJ_G0027079.1 mouse_genomes_project 3 86890166 86912397 + MGP_C3HHeJ_P0061103 Fcrl5 protein_coding protein_coding MGP_C3HHeJ_T0061104.1 MGP_C3HHeJ_G0027079.1 mouse_genomes_project 3 86890166 86912397 + MGP_C3HHeJ_P0061104 Fcrl5 protein_coding protein_coding MGP_C3HHeJ_T0062059.1 MGP_C3HHeJ_G0027289.1 mouse_genomes_project 3 95706141 95717437 + MGP_C3HHeJ_P0062059 Ctsk protein_coding protein_coding MGP_C3HHeJ_T0013926.1 MGP_C3HHeJ_G0012030.1 mouse_genomes_project 3 62436145 62436796 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062729.1 MGP_C3HHeJ_G0027448.1 mouse_genomes_project 3 108243237 108264145 + MGP_C3HHeJ_P0062729 Slc16a4 protein_coding protein_coding MGP_C3HHeJ_T0062730.1 MGP_C3HHeJ_G0027448.1 mouse_genomes_project 3 108243301 108254583 + Slc16a4 protein_coding retained_intron MGP_C3HHeJ_T0062731.1 MGP_C3HHeJ_G0027448.1 mouse_genomes_project 3 108243322 108259747 + MGP_C3HHeJ_P0062731 Slc16a4 protein_coding protein_coding MGP_C3HHeJ_T0062984.1 MGP_C3HHeJ_G0027505.1 mouse_genomes_project 3 117151241 117183263 + MGP_C3HHeJ_P0062984 Dph5 protein_coding protein_coding MGP_C3HHeJ_T0062985.1 MGP_C3HHeJ_G0027505.1 mouse_genomes_project 3 117151256 117151883 + MGP_C3HHeJ_P0062985 Dph5 protein_coding protein_coding MGP_C3HHeJ_T0062986.1 MGP_C3HHeJ_G0027505.1 mouse_genomes_project 3 117151550 117164392 + MGP_C3HHeJ_P0062986 Dph5 protein_coding protein_coding MGP_C3HHeJ_T0062987.1 MGP_C3HHeJ_G0027505.1 mouse_genomes_project 3 117151568 117189669 + MGP_C3HHeJ_P0062987 Dph5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062988.1 MGP_C3HHeJ_G0027505.1 mouse_genomes_project 3 117151576 117165758 + MGP_C3HHeJ_P0062988 Dph5 protein_coding protein_coding MGP_C3HHeJ_T0062989.1 MGP_C3HHeJ_G0027505.1 mouse_genomes_project 3 117151586 117183441 + MGP_C3HHeJ_P0062989 Dph5 protein_coding protein_coding MGP_C3HHeJ_T0062990.1 MGP_C3HHeJ_G0027505.1 mouse_genomes_project 3 117151597 117155678 + Dph5 protein_coding retained_intron MGP_C3HHeJ_T0062991.1 MGP_C3HHeJ_G0027505.1 mouse_genomes_project 3 117151598 117156393 + Dph5 protein_coding retained_intron MGP_C3HHeJ_T0010425.1 MGP_C3HHeJ_G0008558.1 mouse_genomes_project 3 33104463 33104555 + Gm25442 miRNA miRNA MGP_C3HHeJ_T0004303.1 MGP_C3HHeJ_G0003754.1 mouse_genomes_project 3 133149560 133164429 + 4930534D22Rik antisense antisense MGP_C3HHeJ_T0061999.1 MGP_C3HHeJ_G0027279.1 mouse_genomes_project 3 95393221 95402812 - MGP_C3HHeJ_P0061999 Mllt11 protein_coding protein_coding MGP_C3HHeJ_T0062000.1 MGP_C3HHeJ_G0027279.1 mouse_genomes_project 3 95394115 95406552 - MGP_C3HHeJ_P0062000 Mllt11 protein_coding protein_coding MGP_C3HHeJ_T0062001.1 MGP_C3HHeJ_G0027279.1 mouse_genomes_project 3 95394125 95406555 - MGP_C3HHeJ_P0062001 Mllt11 protein_coding protein_coding MGP_C3HHeJ_T0062002.1 MGP_C3HHeJ_G0027279.1 mouse_genomes_project 3 95402220 95404856 - Mllt11 protein_coding processed_transcript MGP_C3HHeJ_T0062006.1 MGP_C3HHeJ_G0027279.1 mouse_genomes_project 3 95403180 95404782 - Mllt11 protein_coding processed_transcript MGP_C3HHeJ_T0013933.1 MGP_C3HHeJ_G0012037.1 mouse_genomes_project 3 64856603 64859388 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001332.1 MGP_C3HHeJ_G0001263.1 mouse_genomes_project 3 139890391 139892733 + TEC TEC MGP_C3HHeJ_T0060486.1 MGP_C3HHeJ_G0026931.1 mouse_genomes_project 3 53062485 53079152 + MGP_C3HHeJ_P0060486 Alg5 protein_coding protein_coding MGP_C3HHeJ_T0060487.1 MGP_C3HHeJ_G0026931.1 mouse_genomes_project 3 53062505 53080675 + MGP_C3HHeJ_P0060487 Alg5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060488.1 MGP_C3HHeJ_G0026931.1 mouse_genomes_project 3 53062513 53074829 + MGP_C3HHeJ_P0060488 Alg5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060489.1 MGP_C3HHeJ_G0026931.1 mouse_genomes_project 3 53062519 53067760 + Alg5 protein_coding retained_intron MGP_C3HHeJ_T0007621.1 MGP_C3HHeJ_G0006227.1 mouse_genomes_project 3 132698511 132701266 + Gm43351 lincRNA lincRNA MGP_C3HHeJ_T0017751.1 MGP_C3HHeJ_G0015275.1 mouse_genomes_project 3 101037719 101040180 + 4930406D18Rik processed_transcript retained_intron MGP_C3HHeJ_T0017752.1 MGP_C3HHeJ_G0015275.1 mouse_genomes_project 3 101037753 101049542 + 4930406D18Rik processed_transcript lincRNA MGP_C3HHeJ_T0013811.1 MGP_C3HHeJ_G0011915.1 mouse_genomes_project 3 22412104 22412387 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010441.1 MGP_C3HHeJ_G0008574.1 mouse_genomes_project 3 87984245 87984318 - Mir7011 miRNA miRNA MGP_C3HHeJ_T0060110.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33532388 33534296 + Atp11b protein_coding retained_intron MGP_C3HHeJ_T0060111.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33532416 33630648 + Atp11b protein_coding processed_transcript MGP_C3HHeJ_T0060112.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33532416 33657209 + Atp11b protein_coding retained_intron MGP_C3HHeJ_T0060113.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33532416 33657214 + MGP_C3HHeJ_P0060113 Atp11b protein_coding protein_coding MGP_C3HHeJ_T0060114.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33588284 33607110 + MGP_C3HHeJ_P0060114 Atp11b protein_coding protein_coding MGP_C3HHeJ_T0060115.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33589775 33657212 + MGP_C3HHeJ_P0060115 Atp11b protein_coding protein_coding MGP_C3HHeJ_T0060116.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33607983 33610423 + Atp11b protein_coding processed_transcript MGP_C3HHeJ_T0060117.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33628003 33630149 + Atp11b protein_coding retained_intron MGP_C3HHeJ_T0060118.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33639695 33657209 + Atp11b protein_coding retained_intron MGP_C3HHeJ_T0060119.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33640028 33657214 + MGP_C3HHeJ_P0060119 Atp11b protein_coding protein_coding MGP_C3HHeJ_T0007608.1 MGP_C3HHeJ_G0006216.1 mouse_genomes_project 3 127819625 127821648 + Gm42827 lincRNA lincRNA MGP_C3HHeJ_T0007601.1 MGP_C3HHeJ_G0006211.1 mouse_genomes_project 3 123231386 123232204 - Gm43607 lincRNA lincRNA MGP_C3HHeJ_T0061007.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83502825 83650201 - MGP_C3HHeJ_P0061007 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061008.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83502826 83603835 - MGP_C3HHeJ_P0061008 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061009.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83502827 83564461 - MGP_C3HHeJ_P0061009 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061010.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83504260 83564449 - MGP_C3HHeJ_P0061010 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061011.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83505726 83556340 - MGP_C3HHeJ_P0061011 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061012.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83506096 83564417 - Trim2 protein_coding retained_intron MGP_C3HHeJ_T0061013.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83506111 83614845 - MGP_C3HHeJ_P0061013 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061015.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83519636 83533356 - Trim2 protein_coding retained_intron MGP_C3HHeJ_T0061016.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83531218 83564446 - Trim2 protein_coding retained_intron MGP_C3HHeJ_T0061017.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83533494 83534381 - Trim2 protein_coding processed_transcript MGP_C3HHeJ_T0061018.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83535043 83650789 - MGP_C3HHeJ_P0061018 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061019.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83535054 83650838 - MGP_C3HHeJ_P0061019 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061020.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83536202 83603392 - MGP_C3HHeJ_P0061020 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061021.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83549983 83564433 - Trim2 protein_coding retained_intron MGP_C3HHeJ_T0061022.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83551280 83564446 - Trim2 protein_coding retained_intron MGP_C3HHeJ_T0061023.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83551882 83564446 - MGP_C3HHeJ_P0061023 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061024.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83601668 83603392 - Trim2 protein_coding processed_transcript MGP_C3HHeJ_T0061025.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83645352 83650133 - Trim2 protein_coding processed_transcript MGP_C3HHeJ_T0061026.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83650237 83652272 - Trim2 protein_coding processed_transcript MGP_C3HHeJ_T0062814.1 MGP_C3HHeJ_G0027468.1 mouse_genomes_project 3 109092718 109133149 - MGP_C3HHeJ_P0062814 Gnai3 protein_coding protein_coding MGP_C3HHeJ_T0013987.1 MGP_C3HHeJ_G0012091.1 mouse_genomes_project 3 80815724 80816509 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007635.1 MGP_C3HHeJ_G0006240.1 mouse_genomes_project 3 138906559 138909871 - Gm43357 lincRNA lincRNA MGP_C3HHeJ_T0013865.1 MGP_C3HHeJ_G0011969.1 mouse_genomes_project 3 42459517 42459926 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061027.1 MGP_C3HHeJ_G0027059.1 mouse_genomes_project 3 83790619 83828532 - MGP_C3HHeJ_P0061027 Fhdc1 protein_coding protein_coding MGP_C3HHeJ_T0061028.1 MGP_C3HHeJ_G0027059.1 mouse_genomes_project 3 83792459 83827597 - MGP_C3HHeJ_P0061028 Fhdc1 protein_coding protein_coding MGP_C3HHeJ_T0061029.1 MGP_C3HHeJ_G0027059.1 mouse_genomes_project 3 83792532 83828496 - MGP_C3HHeJ_P0061029 Fhdc1 protein_coding protein_coding MGP_C3HHeJ_T0061030.1 MGP_C3HHeJ_G0027059.1 mouse_genomes_project 3 83797242 83802118 - Fhdc1 protein_coding retained_intron MGP_C3HHeJ_T0061031.1 MGP_C3HHeJ_G0027059.1 mouse_genomes_project 3 83822612 83827088 - Fhdc1 protein_coding processed_transcript MGP_C3HHeJ_T0101948.1 MGP_C3HHeJ_G0039913.1 mouse_genomes_project 3 62981743 62986084 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007376.1 MGP_C3HHeJ_G0006042.1 mouse_genomes_project 3 10841328 10844019 - Gm2464 lincRNA lincRNA MGP_C3HHeJ_T0013828.1 MGP_C3HHeJ_G0011932.1 mouse_genomes_project 3 31809131 31812866 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060982.1 MGP_C3HHeJ_G0027049.1 mouse_genomes_project 3 82311441 82317623 + MGP_C3HHeJ_P0060982 Fga protein_coding protein_coding MGP_C3HHeJ_T0060983.1 MGP_C3HHeJ_G0027049.1 mouse_genomes_project 3 82311580 82318985 + MGP_C3HHeJ_P0060983 Fga protein_coding protein_coding MGP_C3HHeJ_T0010461.1 MGP_C3HHeJ_G0008594.1 mouse_genomes_project 3 119843663 119843736 + Mir137 miRNA miRNA MGP_C3HHeJ_T0007688.1 MGP_C3HHeJ_G0006283.1 mouse_genomes_project 3 153608599 153611751 + Gm43468 lincRNA lincRNA MGP_C3HHeJ_T0004187.1 MGP_C3HHeJ_G0003679.1 mouse_genomes_project 3 78409595 78451740 + 4921511C10Rik antisense antisense MGP_C3HHeJ_T0062196.1 MGP_C3HHeJ_G0027317.1 mouse_genomes_project 3 96515634 96517268 - MGP_C3HHeJ_P0062196 Hist2h4 protein_coding protein_coding MGP_C3HHeJ_T0014089.1 MGP_C3HHeJ_G0012193.1 mouse_genomes_project 3 111458466 111459109 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060773.1 MGP_C3HHeJ_G0026999.1 mouse_genomes_project 3 66308153 66351369 - MGP_C3HHeJ_P0060773 Rarres1 protein_coding protein_coding MGP_C3HHeJ_T0014174.1 MGP_C3HHeJ_G0012278.1 mouse_genomes_project 3 138916835 138917151 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099269.1 MGP_C3HHeJ_G0037463.1 mouse_genomes_project 3 85379776 85379840 - Gm27811 snRNA snRNA MGP_C3HHeJ_T0062203.1 MGP_C3HHeJ_G0027322.1 mouse_genomes_project 3 96808164 96812199 + MGP_C3HHeJ_P0062203 Hfe2 protein_coding protein_coding MGP_C3HHeJ_T0061300.1 MGP_C3HHeJ_G0027118.1 mouse_genomes_project 3 88123083 88135576 + MGP_C3HHeJ_P0061300 Ssr2 protein_coding protein_coding MGP_C3HHeJ_T0061301.1 MGP_C3HHeJ_G0027118.1 mouse_genomes_project 3 88123146 88131685 + MGP_C3HHeJ_P0061301 Ssr2 protein_coding protein_coding MGP_C3HHeJ_T0061302.1 MGP_C3HHeJ_G0027118.1 mouse_genomes_project 3 88131297 88140583 + MGP_C3HHeJ_P0061302 Ssr2 protein_coding protein_coding MGP_C3HHeJ_T0061303.1 MGP_C3HHeJ_G0027118.1 mouse_genomes_project 3 88131330 88140183 + MGP_C3HHeJ_P0061303 Ssr2 protein_coding protein_coding MGP_C3HHeJ_T0061304.1 MGP_C3HHeJ_G0027118.1 mouse_genomes_project 3 88131356 88140197 + MGP_C3HHeJ_P0061304 Ssr2 protein_coding protein_coding MGP_C3HHeJ_T0061305.1 MGP_C3HHeJ_G0027118.1 mouse_genomes_project 3 88131360 88140583 + MGP_C3HHeJ_P0061305 Ssr2 protein_coding protein_coding MGP_C3HHeJ_T0061671.1 MGP_C3HHeJ_G0027174.1 mouse_genomes_project 3 89853033 89862996 + MGP_C3HHeJ_P0061671 Crtc2 protein_coding protein_coding MGP_C3HHeJ_T0061672.1 MGP_C3HHeJ_G0027174.1 mouse_genomes_project 3 89853166 89862991 + Crtc2 protein_coding retained_intron MGP_C3HHeJ_T0061673.1 MGP_C3HHeJ_G0027174.1 mouse_genomes_project 3 89853166 89862991 + Crtc2 protein_coding retained_intron MGP_C3HHeJ_T0061674.1 MGP_C3HHeJ_G0027174.1 mouse_genomes_project 3 89853194 89857504 + Crtc2 protein_coding retained_intron MGP_C3HHeJ_T0061675.1 MGP_C3HHeJ_G0027174.1 mouse_genomes_project 3 89853211 89862991 + Crtc2 protein_coding processed_transcript MGP_C3HHeJ_T0061676.1 MGP_C3HHeJ_G0027174.1 mouse_genomes_project 3 89856165 89862991 + MGP_C3HHeJ_P0061676 Crtc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061677.1 MGP_C3HHeJ_G0027174.1 mouse_genomes_project 3 89856921 89858363 + Crtc2 protein_coding retained_intron MGP_C3HHeJ_T0061678.1 MGP_C3HHeJ_G0027174.1 mouse_genomes_project 3 89857835 89859192 + Crtc2 protein_coding retained_intron MGP_C3HHeJ_T0059998.1 MGP_C3HHeJ_G0026845.1 mouse_genomes_project 3 28687904 28717436 + MGP_C3HHeJ_P0059998 Skil protein_coding protein_coding MGP_C3HHeJ_T0059999.1 MGP_C3HHeJ_G0026845.1 mouse_genomes_project 3 28687907 28694241 + Skil protein_coding retained_intron MGP_C3HHeJ_T0060000.1 MGP_C3HHeJ_G0026845.1 mouse_genomes_project 3 28687907 28717440 + MGP_C3HHeJ_P0060000 Skil protein_coding protein_coding MGP_C3HHeJ_T0060001.1 MGP_C3HHeJ_G0026845.1 mouse_genomes_project 3 28687911 28690740 + MGP_C3HHeJ_P0060001 Skil protein_coding protein_coding MGP_C3HHeJ_T0060002.1 MGP_C3HHeJ_G0026845.1 mouse_genomes_project 3 28687971 28714149 + MGP_C3HHeJ_P0060002 Skil protein_coding protein_coding MGP_C3HHeJ_T0060003.1 MGP_C3HHeJ_G0026845.1 mouse_genomes_project 3 28689680 28713860 + MGP_C3HHeJ_P0060003 Skil protein_coding protein_coding MGP_C3HHeJ_T0060004.1 MGP_C3HHeJ_G0026845.1 mouse_genomes_project 3 28690178 28717443 + MGP_C3HHeJ_P0060004 Skil protein_coding unknown_likely_coding MGP_C3HHeJ_T0011445.1 MGP_C3HHeJ_G0009578.1 mouse_genomes_project 3 72253383 72253682 - Gm22538 misc_RNA misc_RNA MGP_C3HHeJ_T0013809.1 MGP_C3HHeJ_G0011913.1 mouse_genomes_project 3 19886425 19887195 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063155.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123582329 123724003 + MGP_C3HHeJ_P0063155 Abca4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0063156.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123582402 123724229 + MGP_C3HHeJ_P0063156 Abca4 protein_coding protein_coding MGP_C3HHeJ_T0063157.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123584490 123637839 + Abca4 protein_coding processed_transcript MGP_C3HHeJ_T0063158.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123612830 123627147 + Abca4 protein_coding processed_transcript MGP_C3HHeJ_T0063159.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123660890 123669559 + Abca4 protein_coding retained_intron MGP_C3HHeJ_T0063160.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123662604 123667369 + Abca4 protein_coding retained_intron MGP_C3HHeJ_T0063161.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123672903 123724231 + MGP_C3HHeJ_P0063161 Abca4 protein_coding protein_coding MGP_C3HHeJ_T0063162.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123705846 123707849 + Abca4 protein_coding retained_intron MGP_C3HHeJ_T0063163.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123707347 123713648 + Abca4 protein_coding retained_intron MGP_C3HHeJ_T0063164.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123713287 123714315 + Abca4 protein_coding processed_transcript MGP_C3HHeJ_T0063165.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123716332 123724293 + Abca4 protein_coding retained_intron MGP_C3HHeJ_T0001155.1 MGP_C3HHeJ_G0001089.1 mouse_genomes_project 3 49696606 49699810 + TEC TEC MGP_C3HHeJ_T0100593.1 MGP_C3HHeJ_G0038787.1 mouse_genomes_project 3 156568836 156568917 - Gm24494 snoRNA snoRNA MGP_C3HHeJ_T0063976.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154833136 154864532 - MGP_C3HHeJ_P0063976 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063977.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154833136 154865083 - MGP_C3HHeJ_P0063977 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063978.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154834311 154852037 - MGP_C3HHeJ_P0063978 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063979.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154834354 154845005 - MGP_C3HHeJ_P0063979 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063980.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154834391 154852037 - MGP_C3HHeJ_P0063980 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063981.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154834992 154841566 - Nexn protein_coding processed_transcript MGP_C3HHeJ_T0063982.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154839480 154840877 - Nexn protein_coding retained_intron MGP_C3HHeJ_T0063983.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154840696 154864533 - MGP_C3HHeJ_P0063983 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063984.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154840752 154852091 - MGP_C3HHeJ_P0063984 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063985.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154844761 154845205 - Nexn protein_coding retained_intron MGP_C3HHeJ_T0063986.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154844772 154864560 - MGP_C3HHeJ_P0063986 Nexn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063987.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154844803 154862271 - MGP_C3HHeJ_P0063987 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063988.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154844821 154860300 - MGP_C3HHeJ_P0063988 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063989.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154844923 154861295 - MGP_C3HHeJ_P0063989 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063990.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154849252 154865115 - Nexn protein_coding retained_intron MGP_C3HHeJ_T0063991.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154849465 154849834 - Nexn protein_coding retained_intron MGP_C3HHeJ_T0099299.1 MGP_C3HHeJ_G0037493.1 mouse_genomes_project 3 110929118 110929224 + Gm25681 snRNA snRNA MGP_C3HHeJ_T0013742.1 MGP_C3HHeJ_G0011846.1 mouse_genomes_project 3 1518352 1518782 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099246.1 MGP_C3HHeJ_G0037440.1 mouse_genomes_project 3 43823875 43824038 + Gm25796 snRNA snRNA MGP_C3HHeJ_T0013981.1 MGP_C3HHeJ_G0012085.1 mouse_genomes_project 3 78046636 78047302 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063787.1 MGP_C3HHeJ_G0027657.1 mouse_genomes_project 3 147276258 147305702 - MGP_C3HHeJ_P0063787 Clca1 protein_coding protein_coding MGP_C3HHeJ_T0063788.1 MGP_C3HHeJ_G0027657.1 mouse_genomes_project 3 147276998 147281615 - Clca1 protein_coding processed_transcript MGP_C3HHeJ_T0063789.1 MGP_C3HHeJ_G0027657.1 mouse_genomes_project 3 147286402 147291969 - Clca1 protein_coding processed_transcript MGP_C3HHeJ_T0100533.1 MGP_C3HHeJ_G0038727.1 mouse_genomes_project 3 44318533 44318665 + Gm26081 snoRNA snoRNA MGP_C3HHeJ_T0099297.1 MGP_C3HHeJ_G0037491.1 mouse_genomes_project 3 105542588 105542678 + Gm24223 snRNA snRNA MGP_C3HHeJ_T0001097.1 MGP_C3HHeJ_G0001031.1 mouse_genomes_project 3 27846974 27849038 - TEC TEC MGP_C3HHeJ_T0098462.1 MGP_C3HHeJ_G0036667.1 mouse_genomes_project 3 121213926 121217166 - Gm42664 sense_intronic sense_intronic MGP_C3HHeJ_T0013816.1 MGP_C3HHeJ_G0011920.1 mouse_genomes_project 3 24761921 24762309 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061139.1 MGP_C3HHeJ_G0027084.1 mouse_genomes_project 3 87268728 87285673 - MGP_C3HHeJ_P0061139 Ntrk1 protein_coding protein_coding MGP_C3HHeJ_T0001354.1 MGP_C3HHeJ_G0001285.1 mouse_genomes_project 3 157615871 157619856 + TEC TEC MGP_C3HHeJ_T0064033.1 MGP_C3HHeJ_G0027696.1 mouse_genomes_project 3 155435191 155602925 - MGP_C3HHeJ_P0064033 St6galnac5 protein_coding protein_coding MGP_C3HHeJ_T0064034.1 MGP_C3HHeJ_G0027696.1 mouse_genomes_project 3 155595992 155602731 - St6galnac5 protein_coding processed_transcript MGP_C3HHeJ_T0013844.1 MGP_C3HHeJ_G0011948.1 mouse_genomes_project 3 35174704 35175023 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099247.1 MGP_C3HHeJ_G0037441.1 mouse_genomes_project 3 44015959 44016077 + Gm23337 snRNA snRNA MGP_C3HHeJ_T0014167.1 MGP_C3HHeJ_G0012271.1 mouse_genomes_project 3 137380732 137381061 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013989.1 MGP_C3HHeJ_G0012093.1 mouse_genomes_project 3 81926111 81926691 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098457.1 MGP_C3HHeJ_G0036662.1 mouse_genomes_project 3 106595065 106596499 - Gm43328 sense_intronic sense_intronic MGP_C3HHeJ_T0004335.1 MGP_C3HHeJ_G0003776.1 mouse_genomes_project 3 157391663 157394356 - Gm20389 antisense antisense MGP_C3HHeJ_T0001081.1 MGP_C3HHeJ_G0001015.1 mouse_genomes_project 3 8130836 8132518 - TEC TEC MGP_C3HHeJ_T0013756.1 MGP_C3HHeJ_G0011860.1 mouse_genomes_project 3 5894569 5894882 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062018.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95457102 95461721 + Fam63a protein_coding processed_transcript MGP_C3HHeJ_T0062019.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95457174 95463594 + Fam63a protein_coding processed_transcript MGP_C3HHeJ_T0062020.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95457244 95459274 + Fam63a protein_coding processed_transcript MGP_C3HHeJ_T0062021.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95457602 95460615 + Fam63a protein_coding processed_transcript MGP_C3HHeJ_T0062022.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95458701 95471919 + MGP_C3HHeJ_P0062022 Fam63a protein_coding protein_coding MGP_C3HHeJ_T0062023.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95458701 95471919 + MGP_C3HHeJ_P0062023 Fam63a protein_coding protein_coding MGP_C3HHeJ_T0062024.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95458972 95467560 + Fam63a protein_coding retained_intron MGP_C3HHeJ_T0062025.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95459359 95463594 + Fam63a protein_coding processed_transcript MGP_C3HHeJ_T0062026.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95461596 95463772 + MGP_C3HHeJ_P0062026 Fam63a protein_coding protein_coding MGP_C3HHeJ_T0062027.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95461956 95463718 + Fam63a protein_coding processed_transcript MGP_C3HHeJ_T0062028.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95463705 95471916 + MGP_C3HHeJ_P0062028 Fam63a protein_coding protein_coding MGP_C3HHeJ_T0062029.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95467738 95471914 + Fam63a protein_coding processed_transcript MGP_C3HHeJ_T0098455.1 MGP_C3HHeJ_G0036660.1 mouse_genomes_project 3 105812529 105814355 - sense_intronic sense_intronic MGP_C3HHeJ_T0062342.1 MGP_C3HHeJ_G0027357.1 mouse_genomes_project 3 98840966 98847798 - MGP_C3HHeJ_P0062342 protein_coding protein_coding MGP_C3HHeJ_T0060960.1 MGP_C3HHeJ_G0027043.1 mouse_genomes_project 3 81338869 81392913 - MGP_C3HHeJ_P0060960 Gucy1a3 protein_coding protein_coding MGP_C3HHeJ_T0060961.1 MGP_C3HHeJ_G0027043.1 mouse_genomes_project 3 81338879 81393627 - MGP_C3HHeJ_P0060961 Gucy1a3 protein_coding protein_coding MGP_C3HHeJ_T0060962.1 MGP_C3HHeJ_G0027043.1 mouse_genomes_project 3 81341007 81348478 - MGP_C3HHeJ_P0060962 Gucy1a3 protein_coding protein_coding MGP_C3HHeJ_T0060963.1 MGP_C3HHeJ_G0027043.1 mouse_genomes_project 3 81353176 81393629 - Gucy1a3 protein_coding retained_intron MGP_C3HHeJ_T0060964.1 MGP_C3HHeJ_G0027043.1 mouse_genomes_project 3 81365551 81393445 - Gucy1a3 protein_coding processed_transcript MGP_C3HHeJ_T0063877.1 MGP_C3HHeJ_G0027676.1 mouse_genomes_project 3 148932703 148992534 + MGP_C3HHeJ_P0063877 Uox protein_coding protein_coding MGP_C3HHeJ_T0063880.1 MGP_C3HHeJ_G0027676.1 mouse_genomes_project 3 148961819 148998929 + MGP_C3HHeJ_P0063880 Uox protein_coding protein_coding MGP_C3HHeJ_T0063881.1 MGP_C3HHeJ_G0027676.1 mouse_genomes_project 3 148961890 148977074 + MGP_C3HHeJ_P0063881 Uox protein_coding protein_coding MGP_C3HHeJ_T0063882.1 MGP_C3HHeJ_G0027676.1 mouse_genomes_project 3 148961907 148997269 + MGP_C3HHeJ_P0063882 Uox protein_coding protein_coding MGP_C3HHeJ_T0063883.1 MGP_C3HHeJ_G0027676.1 mouse_genomes_project 3 148961908 148977192 + Uox protein_coding retained_intron MGP_C3HHeJ_T0063884.1 MGP_C3HHeJ_G0027676.1 mouse_genomes_project 3 148974733 148977097 + Uox protein_coding retained_intron MGP_C3HHeJ_T0061380.1 MGP_C3HHeJ_G0027129.1 mouse_genomes_project 3 88610243 88616320 - MGP_C3HHeJ_P0061380 Rusc1 protein_coding protein_coding MGP_C3HHeJ_T0061381.1 MGP_C3HHeJ_G0027129.1 mouse_genomes_project 3 88610243 88619565 - MGP_C3HHeJ_P0061381 Rusc1 protein_coding protein_coding MGP_C3HHeJ_T0061382.1 MGP_C3HHeJ_G0027129.1 mouse_genomes_project 3 88610243 88619586 - MGP_C3HHeJ_P0061382 Rusc1 protein_coding protein_coding MGP_C3HHeJ_T0061383.1 MGP_C3HHeJ_G0027129.1 mouse_genomes_project 3 88613395 88616016 - Rusc1 protein_coding retained_intron MGP_C3HHeJ_T0061384.1 MGP_C3HHeJ_G0027129.1 mouse_genomes_project 3 88614495 88616250 - MGP_C3HHeJ_P0061384 Rusc1 protein_coding protein_coding MGP_C3HHeJ_T0061385.1 MGP_C3HHeJ_G0027129.1 mouse_genomes_project 3 88615329 88616030 - Rusc1 protein_coding retained_intron MGP_C3HHeJ_T0061386.1 MGP_C3HHeJ_G0027129.1 mouse_genomes_project 3 88615513 88616250 - MGP_C3HHeJ_P0061386 Rusc1 protein_coding protein_coding MGP_C3HHeJ_T0063613.1 MGP_C3HHeJ_G0027618.1 mouse_genomes_project 3 139911279 139921016 + MGP_C3HHeJ_P0063613 Lamtor3 protein_coding protein_coding MGP_C3HHeJ_T0063614.1 MGP_C3HHeJ_G0027618.1 mouse_genomes_project 3 139911299 139912288 + Lamtor3 protein_coding retained_intron MGP_C3HHeJ_T0063615.1 MGP_C3HHeJ_G0027618.1 mouse_genomes_project 3 139911299 139921558 + MGP_C3HHeJ_P0063615 Lamtor3 protein_coding protein_coding MGP_C3HHeJ_T0063616.1 MGP_C3HHeJ_G0027618.1 mouse_genomes_project 3 139911335 139921037 + Lamtor3 protein_coding processed_transcript MGP_C3HHeJ_T0063617.1 MGP_C3HHeJ_G0027618.1 mouse_genomes_project 3 139911345 139919613 + MGP_C3HHeJ_P0063617 Lamtor3 protein_coding protein_coding MGP_C3HHeJ_T0063618.1 MGP_C3HHeJ_G0027618.1 mouse_genomes_project 3 139911617 139919898 + Lamtor3 protein_coding retained_intron MGP_C3HHeJ_T0063619.1 MGP_C3HHeJ_G0027618.1 mouse_genomes_project 3 139917595 139920952 + Lamtor3 protein_coding retained_intron MGP_C3HHeJ_T0063620.1 MGP_C3HHeJ_G0027618.1 mouse_genomes_project 3 139918975 139921693 + Lamtor3 protein_coding retained_intron MGP_C3HHeJ_T0013870.1 MGP_C3HHeJ_G0011974.1 mouse_genomes_project 3 44446257 44446976 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060615.1 MGP_C3HHeJ_G0026961.1 mouse_genomes_project 3 57659977 57662968 - MGP_C3HHeJ_P0060615 P2ry13 protein_coding protein_coding MGP_C3HHeJ_T0004231.1 MGP_C3HHeJ_G0003708.1 mouse_genomes_project 3 96493834 96498041 - Gm20633 antisense antisense MGP_C3HHeJ_T0060209.1 MGP_C3HHeJ_G0026881.1 mouse_genomes_project 3 34964407 34971450 - MGP_C3HHeJ_P0060209 Il2 protein_coding protein_coding MGP_C3HHeJ_T0060990.1 MGP_C3HHeJ_G0027052.1 mouse_genomes_project 3 82421254 82648729 + MGP_C3HHeJ_P0060990 Dchs2 protein_coding protein_coding MGP_C3HHeJ_T0063195.1 MGP_C3HHeJ_G0027544.1 mouse_genomes_project 3 124502135 124508426 - MGP_C3HHeJ_P0063195 Gm10959 protein_coding protein_coding MGP_C3HHeJ_T0007428.1 MGP_C3HHeJ_G0006083.1 mouse_genomes_project 3 35950089 35977933 - Gm43821 lincRNA lincRNA MGP_C3HHeJ_T0062826.1 MGP_C3HHeJ_G0027472.1 mouse_genomes_project 3 109192511 109201224 - MGP_C3HHeJ_P0062826 Atxn7l2 protein_coding protein_coding MGP_C3HHeJ_T0062827.1 MGP_C3HHeJ_G0027472.1 mouse_genomes_project 3 109192517 109198864 - Atxn7l2 protein_coding retained_intron MGP_C3HHeJ_T0062828.1 MGP_C3HHeJ_G0027472.1 mouse_genomes_project 3 109192648 109200731 - MGP_C3HHeJ_P0062828 Atxn7l2 protein_coding protein_coding MGP_C3HHeJ_T0062829.1 MGP_C3HHeJ_G0027472.1 mouse_genomes_project 3 109197371 109199861 - MGP_C3HHeJ_P0062829 Atxn7l2 protein_coding protein_coding MGP_C3HHeJ_T0062830.1 MGP_C3HHeJ_G0027472.1 mouse_genomes_project 3 109199265 109200758 - Atxn7l2 protein_coding processed_transcript MGP_C3HHeJ_T0001244.1 MGP_C3HHeJ_G0001176.1 mouse_genomes_project 3 105548489 105552807 + TEC TEC MGP_C3HHeJ_T0013936.1 MGP_C3HHeJ_G0012040.1 mouse_genomes_project 3 65021730 65021883 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063790.1 MGP_C3HHeJ_G0027658.1 mouse_genomes_project 3 147341765 147370598 - MGP_C3HHeJ_P0063790 Clca2 protein_coding protein_coding MGP_C3HHeJ_T0063791.1 MGP_C3HHeJ_G0027658.1 mouse_genomes_project 3 147343259 147370600 - MGP_C3HHeJ_P0063791 Clca2 protein_coding protein_coding MGP_C3HHeJ_T0063792.1 MGP_C3HHeJ_G0027658.1 mouse_genomes_project 3 147370337 147370937 - Clca2 protein_coding processed_transcript MGP_C3HHeJ_T0001115.1 MGP_C3HHeJ_G0001049.1 mouse_genomes_project 3 33770567 33773210 - TEC TEC MGP_C3HHeJ_T0099322.1 MGP_C3HHeJ_G0037516.1 mouse_genomes_project 3 160185720 160185827 - Gm23379 snRNA snRNA MGP_C3HHeJ_T0011720.1 MGP_C3HHeJ_G0009841.1 mouse_genomes_project 3 92223127 92224442 + MGP_C3HHeJ_P0011720 Sprr2g polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0001096.1 MGP_C3HHeJ_G0001030.1 mouse_genomes_project 3 27842481 27844596 - TEC TEC MGP_C3HHeJ_T0060550.1 MGP_C3HHeJ_G0026944.1 mouse_genomes_project 3 55792969 55807332 + MGP_C3HHeJ_P0060550 Tm4sf4 protein_coding protein_coding MGP_C3HHeJ_T0098287.1 MGP_C3HHeJ_G0036499.1 mouse_genomes_project 3 67935061 67935410 - Gm22009 scaRNA scaRNA MGP_C3HHeJ_T0063525.1 MGP_C3HHeJ_G0027604.1 mouse_genomes_project 3 137200136 137234979 + MGP_C3HHeJ_P0063525 Slc9b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063526.1 MGP_C3HHeJ_G0027604.1 mouse_genomes_project 3 137200167 137217278 + Slc9b2 protein_coding retained_intron MGP_C3HHeJ_T0063527.1 MGP_C3HHeJ_G0027604.1 mouse_genomes_project 3 137200178 137210810 + MGP_C3HHeJ_P0063527 Slc9b2 protein_coding protein_coding MGP_C3HHeJ_T0063528.1 MGP_C3HHeJ_G0027604.1 mouse_genomes_project 3 137200181 137238474 + MGP_C3HHeJ_P0063528 Slc9b2 protein_coding protein_coding MGP_C3HHeJ_T0063529.1 MGP_C3HHeJ_G0027604.1 mouse_genomes_project 3 137222749 137235211 + Slc9b2 protein_coding retained_intron MGP_C3HHeJ_T0001300.1 MGP_C3HHeJ_G0001232.1 mouse_genomes_project 3 129049571 129052792 - TEC TEC MGP_C3HHeJ_T0007642.1 MGP_C3HHeJ_G0006247.1 mouse_genomes_project 3 140731134 140747227 - 4930425O10Rik lincRNA lincRNA MGP_C3HHeJ_T0013779.1 MGP_C3HHeJ_G0011883.1 mouse_genomes_project 3 11807490 11807969 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063134.1 MGP_C3HHeJ_G0027533.1 mouse_genomes_project 3 123190631 123202754 + MGP_C3HHeJ_P0063134 4930432M17Rik protein_coding protein_coding MGP_C3HHeJ_T0063135.1 MGP_C3HHeJ_G0027533.1 mouse_genomes_project 3 123191186 123202607 + MGP_C3HHeJ_P0063135 4930432M17Rik protein_coding protein_coding MGP_C3HHeJ_T0001152.1 MGP_C3HHeJ_G0001086.1 mouse_genomes_project 3 49487449 49487865 - TEC TEC MGP_C3HHeJ_T0013744.1 MGP_C3HHeJ_G0011848.1 mouse_genomes_project 3 3306365 3306867 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007612.1 MGP_C3HHeJ_G0006220.1 mouse_genomes_project 3 130333722 130605098 + lincRNA lincRNA MGP_C3HHeJ_T0101950.1 MGP_C3HHeJ_G0039915.1 mouse_genomes_project 3 69500082 69501117 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0060441.1 MGP_C3HHeJ_G0026924.1 mouse_genomes_project 3 52143821 52144010 + MGP_C3HHeJ_P0060441 Gm10985 protein_coding protein_coding MGP_C3HHeJ_T0061746.1 MGP_C3HHeJ_G0027187.1 mouse_genomes_project 3 90184267 90210053 + S100a3 protein_coding processed_transcript MGP_C3HHeJ_T0061747.1 MGP_C3HHeJ_G0027187.1 mouse_genomes_project 3 90209386 90226872 + MGP_C3HHeJ_P0061747 S100a3 protein_coding protein_coding MGP_C3HHeJ_T0061748.1 MGP_C3HHeJ_G0027187.1 mouse_genomes_project 3 90211679 90226918 + MGP_C3HHeJ_P0061748 S100a3 protein_coding protein_coding MGP_C3HHeJ_T0061750.1 MGP_C3HHeJ_G0027187.1 mouse_genomes_project 3 90224608 90227096 + MGP_C3HHeJ_P0061750 S100a3 protein_coding protein_coding MGP_C3HHeJ_T0061751.1 MGP_C3HHeJ_G0027187.1 mouse_genomes_project 3 90224638 90227096 + S100a3 protein_coding retained_intron MGP_C3HHeJ_T0061722.1 MGP_C3HHeJ_G0027182.1 mouse_genomes_project 3 90113814 90124957 - MGP_C3HHeJ_P0061722 Chtop protein_coding protein_coding MGP_C3HHeJ_T0061723.1 MGP_C3HHeJ_G0027182.1 mouse_genomes_project 3 90113814 90124956 - MGP_C3HHeJ_P0061723 Chtop protein_coding protein_coding MGP_C3HHeJ_T0061724.1 MGP_C3HHeJ_G0027182.1 mouse_genomes_project 3 90113814 90124955 - MGP_C3HHeJ_P0061724 Chtop protein_coding protein_coding MGP_C3HHeJ_T0061725.1 MGP_C3HHeJ_G0027182.1 mouse_genomes_project 3 90113816 90124967 - MGP_C3HHeJ_P0061725 Chtop protein_coding protein_coding MGP_C3HHeJ_T0061726.1 MGP_C3HHeJ_G0027182.1 mouse_genomes_project 3 90113823 90125003 - MGP_C3HHeJ_P0061726 Chtop protein_coding protein_coding MGP_C3HHeJ_T0061727.1 MGP_C3HHeJ_G0027182.1 mouse_genomes_project 3 90114352 90124979 - MGP_C3HHeJ_P0061727 Chtop protein_coding protein_coding MGP_C3HHeJ_T0061728.1 MGP_C3HHeJ_G0027182.1 mouse_genomes_project 3 90114553 90124990 - MGP_C3HHeJ_P0061728 Chtop protein_coding protein_coding MGP_C3HHeJ_T0061729.1 MGP_C3HHeJ_G0027182.1 mouse_genomes_project 3 90117016 90124981 - MGP_C3HHeJ_P0061729 Chtop protein_coding protein_coding MGP_C3HHeJ_T0061730.1 MGP_C3HHeJ_G0027182.1 mouse_genomes_project 3 90117989 90124527 - MGP_C3HHeJ_P0061730 Chtop protein_coding protein_coding MGP_C3HHeJ_T0001122.1 MGP_C3HHeJ_G0001056.1 mouse_genomes_project 3 35563550 35566678 + TEC TEC MGP_C3HHeJ_T0061801.1 MGP_C3HHeJ_G0027226.1 mouse_genomes_project 3 92564185 92565859 - MGP_C3HHeJ_P0061801 Lce1e protein_coding protein_coding MGP_C3HHeJ_T0101182.1 MGP_C3HHeJ_G0039330.1 mouse_genomes_project 3 11992874 11993154 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0061174.1 MGP_C3HHeJ_G0027093.1 mouse_genomes_project 3 87483296 87485610 + Nes protein_coding retained_intron MGP_C3HHeJ_T0061175.1 MGP_C3HHeJ_G0027093.1 mouse_genomes_project 3 87483311 87492939 + MGP_C3HHeJ_P0061175 Nes protein_coding protein_coding MGP_C3HHeJ_T0061176.1 MGP_C3HHeJ_G0027093.1 mouse_genomes_project 3 87483347 87492939 + MGP_C3HHeJ_P0061176 Nes protein_coding protein_coding MGP_C3HHeJ_T0007540.1 MGP_C3HHeJ_G0006162.1 mouse_genomes_project 3 96091555 96098287 + Gm26594 lincRNA lincRNA MGP_C3HHeJ_T0007600.1 MGP_C3HHeJ_G0006210.1 mouse_genomes_project 3 123220555 123230022 - Gm43608 lincRNA lincRNA MGP_C3HHeJ_T0060350.1 MGP_C3HHeJ_G0026905.1 mouse_genomes_project 3 44477035 44483058 - MGP_C3HHeJ_P0060350 Pabpc4l protein_coding protein_coding MGP_C3HHeJ_T0060351.1 MGP_C3HHeJ_G0026905.1 mouse_genomes_project 3 44477035 44482780 - MGP_C3HHeJ_P0060351 Pabpc4l protein_coding protein_coding MGP_C3HHeJ_T0060352.1 MGP_C3HHeJ_G0026905.1 mouse_genomes_project 3 44481530 44482780 - MGP_C3HHeJ_P0060352 Pabpc4l protein_coding protein_coding MGP_C3HHeJ_T0060353.1 MGP_C3HHeJ_G0026905.1 mouse_genomes_project 3 44481894 44482759 - MGP_C3HHeJ_P0060353 Pabpc4l protein_coding protein_coding MGP_C3HHeJ_T0013937.1 MGP_C3HHeJ_G0012041.1 mouse_genomes_project 3 65387788 65388601 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061414.1 MGP_C3HHeJ_G0027134.1 mouse_genomes_project 3 88711975 88717341 + MGP_C3HHeJ_P0061414 Scamp3 protein_coding protein_coding MGP_C3HHeJ_T0061415.1 MGP_C3HHeJ_G0027134.1 mouse_genomes_project 3 88711992 88717341 + MGP_C3HHeJ_P0061415 Scamp3 protein_coding protein_coding MGP_C3HHeJ_T0061416.1 MGP_C3HHeJ_G0027134.1 mouse_genomes_project 3 88711998 88714168 + Scamp3 protein_coding retained_intron MGP_C3HHeJ_T0061417.1 MGP_C3HHeJ_G0027134.1 mouse_genomes_project 3 88712022 88717339 + MGP_C3HHeJ_P0061417 Scamp3 protein_coding protein_coding MGP_C3HHeJ_T0061418.1 MGP_C3HHeJ_G0027134.1 mouse_genomes_project 3 88712033 88713955 + Scamp3 protein_coding retained_intron MGP_C3HHeJ_T0061419.1 MGP_C3HHeJ_G0027134.1 mouse_genomes_project 3 88712039 88714167 + Scamp3 protein_coding retained_intron MGP_C3HHeJ_T0061420.1 MGP_C3HHeJ_G0027134.1 mouse_genomes_project 3 88712123 88715852 + Scamp3 protein_coding retained_intron MGP_C3HHeJ_T0061421.1 MGP_C3HHeJ_G0027134.1 mouse_genomes_project 3 88712260 88714888 + Scamp3 protein_coding retained_intron MGP_C3HHeJ_T0013848.1 MGP_C3HHeJ_G0011952.1 mouse_genomes_project 3 35817072 35817548 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061172.1 MGP_C3HHeJ_G0027092.1 mouse_genomes_project 3 87455622 87460319 + MGP_C3HHeJ_P0061172 Crabp2 protein_coding protein_coding MGP_C3HHeJ_T0061173.1 MGP_C3HHeJ_G0027092.1 mouse_genomes_project 3 87459086 87459928 + Crabp2 protein_coding retained_intron MGP_C3HHeJ_T0004322.1 MGP_C3HHeJ_G0003766.1 mouse_genomes_project 3 144856659 144857679 - Gm15540 antisense antisense MGP_C3HHeJ_T0001186.1 MGP_C3HHeJ_G0001118.1 mouse_genomes_project 3 54472231 54475235 - TEC TEC MGP_C3HHeJ_T0061403.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88698543 88711424 + MGP_C3HHeJ_P0061403 Clk2 protein_coding protein_coding MGP_C3HHeJ_T0061404.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88698565 88700953 + MGP_C3HHeJ_P0061404 Clk2 protein_coding protein_coding MGP_C3HHeJ_T0061405.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88698566 88711424 + MGP_C3HHeJ_P0061405 Clk2 protein_coding protein_coding MGP_C3HHeJ_T0061406.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88698567 88711422 + Clk2 protein_coding retained_intron MGP_C3HHeJ_T0061407.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88698567 88707960 + MGP_C3HHeJ_P0061407 Clk2 protein_coding protein_coding MGP_C3HHeJ_T0061408.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88698588 88711424 + MGP_C3HHeJ_P0061408 Clk2 protein_coding protein_coding MGP_C3HHeJ_T0061409.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88698727 88711424 + MGP_C3HHeJ_P0061409 Clk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061410.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88700912 88704151 + Clk2 protein_coding retained_intron MGP_C3HHeJ_T0061411.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88706667 88710583 + Clk2 protein_coding retained_intron MGP_C3HHeJ_T0061412.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88708457 88710250 + Clk2 protein_coding retained_intron MGP_C3HHeJ_T0061413.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88709537 88710474 + Clk2 protein_coding processed_transcript MGP_C3HHeJ_T0064035.1 MGP_C3HHeJ_G0027697.1 mouse_genomes_project 3 155823724 156373200 - MGP_C3HHeJ_P0064035 St6galnac3 protein_coding protein_coding MGP_C3HHeJ_T0064036.1 MGP_C3HHeJ_G0027697.1 mouse_genomes_project 3 155830829 155851032 - MGP_C3HHeJ_P0064036 St6galnac3 protein_coding protein_coding MGP_C3HHeJ_T0064037.1 MGP_C3HHeJ_G0027697.1 mouse_genomes_project 3 155832080 156373139 - MGP_C3HHeJ_P0064037 St6galnac3 protein_coding protein_coding MGP_C3HHeJ_T0064038.1 MGP_C3HHeJ_G0027697.1 mouse_genomes_project 3 156140896 156141762 - St6galnac3 protein_coding retained_intron MGP_C3HHeJ_T0064039.1 MGP_C3HHeJ_G0027697.1 mouse_genomes_project 3 156141151 156369022 - St6galnac3 protein_coding retained_intron MGP_C3HHeJ_T0004278.1 MGP_C3HHeJ_G0003734.1 mouse_genomes_project 3 117390939 117411494 + antisense antisense MGP_C3HHeJ_T0013894.1 MGP_C3HHeJ_G0011998.1 mouse_genomes_project 3 52322106 52322926 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013810.1 MGP_C3HHeJ_G0011914.1 mouse_genomes_project 3 20700348 20700724 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001224.1 MGP_C3HHeJ_G0001156.1 mouse_genomes_project 3 88295928 88296876 - TEC TEC MGP_C3HHeJ_T0001180.1 MGP_C3HHeJ_G0001112.1 mouse_genomes_project 3 52033157 52034759 + TEC TEC MGP_C3HHeJ_T0004259.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108860261 108869463 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004260.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108863282 108869016 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004261.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108864720 108869048 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004262.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108866113 108868942 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004263.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108866144 108869023 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004264.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108866373 108869059 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004265.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108866472 108869024 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004266.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108866516 108869033 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004267.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108866668 108869039 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004268.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108866722 108869050 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004269.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108866752 108869013 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004270.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108867378 108869062 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0014062.1 MGP_C3HHeJ_G0012166.1 mouse_genomes_project 3 103556860 103557268 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013830.1 MGP_C3HHeJ_G0011934.1 mouse_genomes_project 3 33309520 33310439 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013944.1 MGP_C3HHeJ_G0012048.1 mouse_genomes_project 3 67203876 67204457 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060660.1 MGP_C3HHeJ_G0026973.1 mouse_genomes_project 3 59909596 59913298 - MGP_C3HHeJ_P0060660 B430305J03Rik protein_coding protein_coding MGP_C3HHeJ_T0060017.1 MGP_C3HHeJ_G0026852.1 mouse_genomes_project 3 30136484 30156718 - MGP_C3HHeJ_P0060017 Kcnmb3 protein_coding protein_coding MGP_C3HHeJ_T0062329.1 MGP_C3HHeJ_G0027352.1 mouse_genomes_project 3 98526174 98527616 + MGP_C3HHeJ_P0062329 Adam30 protein_coding protein_coding MGP_C3HHeJ_T0062330.1 MGP_C3HHeJ_G0027352.1 mouse_genomes_project 3 98526204 98529714 + MGP_C3HHeJ_P0062330 Adam30 protein_coding protein_coding MGP_C3HHeJ_T0001247.1 MGP_C3HHeJ_G0001179.1 mouse_genomes_project 3 107650882 107655560 + TEC TEC MGP_C3HHeJ_T0061555.1 MGP_C3HHeJ_G0027157.1 mouse_genomes_project 3 89011508 89023489 + MGP_C3HHeJ_P0061555 Pmvk protein_coding protein_coding MGP_C3HHeJ_T0061556.1 MGP_C3HHeJ_G0027157.1 mouse_genomes_project 3 89011547 89023501 + MGP_C3HHeJ_P0061556 Pmvk protein_coding protein_coding MGP_C3HHeJ_T0061557.1 MGP_C3HHeJ_G0027157.1 mouse_genomes_project 3 89011748 89023491 + MGP_C3HHeJ_P0061557 Pmvk protein_coding protein_coding MGP_C3HHeJ_T0004186.1 MGP_C3HHeJ_G0003678.1 mouse_genomes_project 3 64782239 64786518 + Gm37305 antisense antisense MGP_C3HHeJ_T0101417.1 MGP_C3HHeJ_G0039450.1 mouse_genomes_project 3 140337136 140345744 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101418.1 MGP_C3HHeJ_G0039450.1 mouse_genomes_project 3 140339197 140352850 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101419.1 MGP_C3HHeJ_G0039450.1 mouse_genomes_project 3 140347444 140353922 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0007480.1 MGP_C3HHeJ_G0006119.1 mouse_genomes_project 3 66380833 66382918 - Gm35299 lincRNA lincRNA MGP_C3HHeJ_T0014016.1 MGP_C3HHeJ_G0012120.1 mouse_genomes_project 3 92528837 92529465 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014116.1 MGP_C3HHeJ_G0012220.1 mouse_genomes_project 3 121228036 121228210 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100551.1 MGP_C3HHeJ_G0038745.1 mouse_genomes_project 3 85519309 85519431 + Gm25188 snoRNA snoRNA MGP_C3HHeJ_T0001337.1 MGP_C3HHeJ_G0001268.1 mouse_genomes_project 3 149784331 149788821 - TEC TEC MGP_C3HHeJ_T0007650.1 MGP_C3HHeJ_G0006253.1 mouse_genomes_project 3 145136453 145157817 + 4930519L02Rik lincRNA lincRNA MGP_C3HHeJ_T0013955.1 MGP_C3HHeJ_G0012059.1 mouse_genomes_project 3 69001892 69002172 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004213.1 MGP_C3HHeJ_G0003697.1 mouse_genomes_project 3 91949941 91956067 + Gm43735 antisense antisense MGP_C3HHeJ_T0099315.1 MGP_C3HHeJ_G0037509.1 mouse_genomes_project 3 148452468 148452621 - Gm25627 snRNA snRNA MGP_C3HHeJ_T0101977.1 MGP_C3HHeJ_G0039942.1 mouse_genomes_project 3 114344187 114357390 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010478.1 MGP_C3HHeJ_G0008611.1 mouse_genomes_project 3 144729651 144729738 - Mir6381 miRNA miRNA MGP_C3HHeJ_T0001275.1 MGP_C3HHeJ_G0001207.1 mouse_genomes_project 3 124585531 124590246 + TEC TEC MGP_C3HHeJ_T0060841.1 MGP_C3HHeJ_G0027016.1 mouse_genomes_project 3 68882225 68906103 + MGP_C3HHeJ_P0060841 Otol1 protein_coding protein_coding MGP_C3HHeJ_T0001126.1 MGP_C3HHeJ_G0001060.1 mouse_genomes_project 3 36306334 36307515 - TEC TEC MGP_C3HHeJ_T0097900.1 MGP_C3HHeJ_G0036112.1 mouse_genomes_project 3 156435791 156435873 + pseudogene pseudogene MGP_C3HHeJ_T0001265.1 MGP_C3HHeJ_G0001197.1 mouse_genomes_project 3 122519378 122520075 - TEC TEC MGP_C3HHeJ_T0059879.1 MGP_C3HHeJ_G0026823.1 mouse_genomes_project 3 24810010 24832039 + MGP_C3HHeJ_P0059879 Tnfsf10 protein_coding protein_coding MGP_C3HHeJ_T0059880.1 MGP_C3HHeJ_G0026823.1 mouse_genomes_project 3 24810043 24834708 + MGP_C3HHeJ_P0059880 Tnfsf10 protein_coding protein_coding MGP_C3HHeJ_T0100595.1 MGP_C3HHeJ_G0038789.1 mouse_genomes_project 3 159984521 159984653 + Gm24373 snoRNA snoRNA MGP_C3HHeJ_T0004198.1 MGP_C3HHeJ_G0003687.1 mouse_genomes_project 3 87701387 87709401 - 1700113A16Rik antisense antisense MGP_C3HHeJ_T0004199.1 MGP_C3HHeJ_G0003687.1 mouse_genomes_project 3 87701387 87709494 - 1700113A16Rik antisense antisense MGP_C3HHeJ_T0004200.1 MGP_C3HHeJ_G0003687.1 mouse_genomes_project 3 87701840 87709415 - 1700113A16Rik antisense antisense MGP_C3HHeJ_T0101952.1 MGP_C3HHeJ_G0039917.1 mouse_genomes_project 3 79408061 79408212 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010465.1 MGP_C3HHeJ_G0008598.1 mouse_genomes_project 3 129213755 129213829 + Mir302b miRNA miRNA MGP_C3HHeJ_T0063049.1 MGP_C3HHeJ_G0027518.1 mouse_genomes_project 3 117968362 118011069 - MGP_C3HHeJ_P0063049 Slc35a3 protein_coding protein_coding MGP_C3HHeJ_T0063050.1 MGP_C3HHeJ_G0027518.1 mouse_genomes_project 3 117968403 117971166 - Slc35a3 protein_coding processed_transcript MGP_C3HHeJ_T0063051.1 MGP_C3HHeJ_G0027518.1 mouse_genomes_project 3 117975833 118011211 - MGP_C3HHeJ_P0063051 Slc35a3 protein_coding protein_coding MGP_C3HHeJ_T0063052.1 MGP_C3HHeJ_G0027518.1 mouse_genomes_project 3 117975968 118011581 - MGP_C3HHeJ_P0063052 Slc35a3 protein_coding protein_coding MGP_C3HHeJ_T0063053.1 MGP_C3HHeJ_G0027518.1 mouse_genomes_project 3 117988728 118011626 - Slc35a3 protein_coding retained_intron MGP_C3HHeJ_T0063054.1 MGP_C3HHeJ_G0027518.1 mouse_genomes_project 3 117992521 118012193 - MGP_C3HHeJ_P0063054 Slc35a3 protein_coding protein_coding MGP_C3HHeJ_T0013903.1 MGP_C3HHeJ_G0012007.1 mouse_genomes_project 3 55895243 55895793 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004291.1 MGP_C3HHeJ_G0003744.1 mouse_genomes_project 3 125978563 125980252 + Gm42823 antisense antisense MGP_C3HHeJ_T0004287.1 MGP_C3HHeJ_G0003741.1 mouse_genomes_project 3 124131079 124140760 + Gm43569 antisense antisense MGP_C3HHeJ_T0060612.1 MGP_C3HHeJ_G0026960.1 mouse_genomes_project 3 57631008 57632200 - Gpr87 protein_coding retained_intron MGP_C3HHeJ_T0060613.1 MGP_C3HHeJ_G0026960.1 mouse_genomes_project 3 57631008 57647190 - MGP_C3HHeJ_P0060613 Gpr87 protein_coding protein_coding MGP_C3HHeJ_T0060614.1 MGP_C3HHeJ_G0026960.1 mouse_genomes_project 3 57631091 57632171 - MGP_C3HHeJ_P0060614 Gpr87 protein_coding protein_coding MGP_C3HHeJ_T0060742.1 MGP_C3HHeJ_G0026992.1 mouse_genomes_project 3 64882644 65121900 - MGP_C3HHeJ_P0060742 Veph1 protein_coding protein_coding MGP_C3HHeJ_T0060743.1 MGP_C3HHeJ_G0026992.1 mouse_genomes_project 3 64885688 64965490 - Veph1 protein_coding processed_transcript MGP_C3HHeJ_T0060744.1 MGP_C3HHeJ_G0026992.1 mouse_genomes_project 3 64886156 65049328 - MGP_C3HHeJ_P0060744 Veph1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0060747.1 MGP_C3HHeJ_G0026992.1 mouse_genomes_project 3 65075547 65121811 - Veph1 protein_coding retained_intron MGP_C3HHeJ_T0004204.1 MGP_C3HHeJ_G0003691.1 mouse_genomes_project 3 88857514 88860996 + Gm15998 antisense antisense MGP_C3HHeJ_T0062043.1 MGP_C3HHeJ_G0027287.1 mouse_genomes_project 3 95498932 95530503 - Setdb1 protein_coding retained_intron MGP_C3HHeJ_T0062044.1 MGP_C3HHeJ_G0027287.1 mouse_genomes_project 3 95498932 95533012 - MGP_C3HHeJ_P0062044 Setdb1 protein_coding protein_coding MGP_C3HHeJ_T0062045.1 MGP_C3HHeJ_G0027287.1 mouse_genomes_project 3 95498932 95533010 - MGP_C3HHeJ_P0062045 Setdb1 protein_coding protein_coding MGP_C3HHeJ_T0062046.1 MGP_C3HHeJ_G0027287.1 mouse_genomes_project 3 95498932 95530557 - MGP_C3HHeJ_P0062046 Setdb1 protein_coding protein_coding MGP_C3HHeJ_T0062047.1 MGP_C3HHeJ_G0027287.1 mouse_genomes_project 3 95515197 95530503 - Setdb1 protein_coding retained_intron MGP_C3HHeJ_T0007659.1 MGP_C3HHeJ_G0006261.1 mouse_genomes_project 3 145752712 145774158 + Gm42703 lincRNA lincRNA MGP_C3HHeJ_T0011453.1 MGP_C3HHeJ_G0009586.1 mouse_genomes_project 3 108374035 108374368 - Gm24383 misc_RNA misc_RNA MGP_C3HHeJ_T0010426.1 MGP_C3HHeJ_G0008559.1 mouse_genomes_project 3 34300843 34300907 - Mir7009 miRNA miRNA MGP_C3HHeJ_T0014212.1 MGP_C3HHeJ_G0012316.1 mouse_genomes_project 3 155402303 155404934 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060551.1 MGP_C3HHeJ_G0026945.1 mouse_genomes_project 3 55822487 55944044 - MGP_C3HHeJ_P0060551 Wwtr1 protein_coding protein_coding MGP_C3HHeJ_T0060552.1 MGP_C3HHeJ_G0026945.1 mouse_genomes_project 3 55822620 55944126 - MGP_C3HHeJ_P0060552 Wwtr1 protein_coding protein_coding MGP_C3HHeJ_T0060938.1 MGP_C3HHeJ_G0027037.1 mouse_genomes_project 3 80082580 80154367 - MGP_C3HHeJ_P0060938 Glrb protein_coding protein_coding MGP_C3HHeJ_T0060939.1 MGP_C3HHeJ_G0027037.1 mouse_genomes_project 3 80082581 80154321 - MGP_C3HHeJ_P0060939 Glrb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060940.1 MGP_C3HHeJ_G0027037.1 mouse_genomes_project 3 80083942 80152798 - MGP_C3HHeJ_P0060940 Glrb protein_coding protein_coding MGP_C3HHeJ_T0060941.1 MGP_C3HHeJ_G0027037.1 mouse_genomes_project 3 80095020 80154235 - MGP_C3HHeJ_P0060941 Glrb protein_coding protein_coding MGP_C3HHeJ_T0060942.1 MGP_C3HHeJ_G0027037.1 mouse_genomes_project 3 80095027 80096647 - Glrb protein_coding retained_intron MGP_C3HHeJ_T0060943.1 MGP_C3HHeJ_G0027037.1 mouse_genomes_project 3 80101589 80154296 - MGP_C3HHeJ_P0060943 Glrb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060787.1 MGP_C3HHeJ_G0027004.1 mouse_genomes_project 3 67568477 67576381 + MGP_C3HHeJ_P0060787 Il12a protein_coding protein_coding MGP_C3HHeJ_T0060788.1 MGP_C3HHeJ_G0027004.1 mouse_genomes_project 3 67569257 67576377 + MGP_C3HHeJ_P0060788 Il12a protein_coding protein_coding MGP_C3HHeJ_T0060789.1 MGP_C3HHeJ_G0027004.1 mouse_genomes_project 3 67569360 67575925 + Il12a protein_coding retained_intron MGP_C3HHeJ_T0060790.1 MGP_C3HHeJ_G0027004.1 mouse_genomes_project 3 67571826 67575857 + Il12a protein_coding retained_intron MGP_C3HHeJ_T0060791.1 MGP_C3HHeJ_G0027004.1 mouse_genomes_project 3 67571854 67576379 + Il12a protein_coding retained_intron MGP_C3HHeJ_T0060792.1 MGP_C3HHeJ_G0027004.1 mouse_genomes_project 3 67571854 67576381 + Il12a protein_coding retained_intron MGP_C3HHeJ_T0007577.1 MGP_C3HHeJ_G0006193.1 mouse_genomes_project 3 108996798 109007205 - Gm12498 lincRNA lincRNA MGP_C3HHeJ_T0098450.1 MGP_C3HHeJ_G0036655.1 mouse_genomes_project 3 105341678 105344225 - sense_intronic sense_intronic MGP_C3HHeJ_T0059746.1 MGP_C3HHeJ_G0026791.1 mouse_genomes_project 3 12280959 12283039 + Car3 protein_coding retained_intron MGP_C3HHeJ_T0059747.1 MGP_C3HHeJ_G0026791.1 mouse_genomes_project 3 12280985 12290028 + MGP_C3HHeJ_P0059747 Car3 protein_coding protein_coding MGP_C3HHeJ_T0059748.1 MGP_C3HHeJ_G0026791.1 mouse_genomes_project 3 12286667 12289576 + Car3 protein_coding retained_intron MGP_C3HHeJ_T0063720.1 MGP_C3HHeJ_G0027641.1 mouse_genomes_project 3 144621694 144642699 + MGP_C3HHeJ_P0063720 Gbp7 protein_coding protein_coding MGP_C3HHeJ_T0063721.1 MGP_C3HHeJ_G0027641.1 mouse_genomes_project 3 144621694 144639602 + MGP_C3HHeJ_P0063721 Gbp7 protein_coding protein_coding MGP_C3HHeJ_T0062250.1 MGP_C3HHeJ_G0027335.1 mouse_genomes_project 3 97017121 97033298 - MGP_C3HHeJ_P0062250 Polr3c protein_coding protein_coding MGP_C3HHeJ_T0062251.1 MGP_C3HHeJ_G0027335.1 mouse_genomes_project 3 97017154 97033111 - MGP_C3HHeJ_P0062251 Polr3c protein_coding protein_coding MGP_C3HHeJ_T0062252.1 MGP_C3HHeJ_G0027335.1 mouse_genomes_project 3 97022083 97029211 - MGP_C3HHeJ_P0062252 Polr3c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062253.1 MGP_C3HHeJ_G0027335.1 mouse_genomes_project 3 97024113 97033146 - Polr3c protein_coding retained_intron MGP_C3HHeJ_T0062254.1 MGP_C3HHeJ_G0027335.1 mouse_genomes_project 3 97028811 97033124 - MGP_C3HHeJ_P0062254 Polr3c protein_coding protein_coding MGP_C3HHeJ_T0062255.1 MGP_C3HHeJ_G0027335.1 mouse_genomes_project 3 97028814 97033145 - MGP_C3HHeJ_P0062255 Polr3c protein_coding protein_coding MGP_C3HHeJ_T0060626.1 MGP_C3HHeJ_G0026964.1 mouse_genomes_project 3 58189088 58212903 + MGP_C3HHeJ_P0060626 Gm5538 protein_coding protein_coding MGP_C3HHeJ_T0060138.1 MGP_C3HHeJ_G0026869.1 mouse_genomes_project 3 33809918 33861111 - MGP_C3HHeJ_P0060138 Ccdc144b protein_coding protein_coding MGP_C3HHeJ_T0060139.1 MGP_C3HHeJ_G0026869.1 mouse_genomes_project 3 33815556 33861096 - MGP_C3HHeJ_P0060139 Ccdc144b protein_coding protein_coding MGP_C3HHeJ_T0060140.1 MGP_C3HHeJ_G0026869.1 mouse_genomes_project 3 33819950 33861096 - MGP_C3HHeJ_P0060140 Ccdc144b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098406.1 MGP_C3HHeJ_G0036612.1 mouse_genomes_project 3 78884561 78888064 - Gm26984 sense_intronic sense_intronic MGP_C3HHeJ_T0063390.1 MGP_C3HHeJ_G0027576.1 mouse_genomes_project 3 131659613 131678125 + MGP_C3HHeJ_P0063390 Pla2g12a protein_coding protein_coding MGP_C3HHeJ_T0063391.1 MGP_C3HHeJ_G0027576.1 mouse_genomes_project 3 131659821 131677239 + MGP_C3HHeJ_P0063391 Pla2g12a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063392.1 MGP_C3HHeJ_G0027576.1 mouse_genomes_project 3 131662642 131677257 + MGP_C3HHeJ_P0063392 Pla2g12a protein_coding protein_coding MGP_C3HHeJ_T0063393.1 MGP_C3HHeJ_G0027576.1 mouse_genomes_project 3 131675129 131678121 + Pla2g12a protein_coding retained_intron MGP_C3HHeJ_T0100594.1 MGP_C3HHeJ_G0038788.1 mouse_genomes_project 3 156569351 156569431 - Snord45c snoRNA snoRNA MGP_C3HHeJ_T0098422.1 MGP_C3HHeJ_G0036627.1 mouse_genomes_project 3 101732782 101736652 - Gm43465 sense_intronic sense_intronic MGP_C3HHeJ_T0017737.1 MGP_C3HHeJ_G0015268.1 mouse_genomes_project 3 81158687 81165016 - Gm9989 processed_transcript lincRNA MGP_C3HHeJ_T0017738.1 MGP_C3HHeJ_G0015268.1 mouse_genomes_project 3 81161885 81165081 - Gm9989 processed_transcript retained_intron MGP_C3HHeJ_T0014145.1 MGP_C3HHeJ_G0012249.1 mouse_genomes_project 3 131874470 131874821 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014013.1 MGP_C3HHeJ_G0012117.1 mouse_genomes_project 3 92168725 92168862 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014218.1 MGP_C3HHeJ_G0012322.1 mouse_genomes_project 3 158994861 158995327 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014078.1 MGP_C3HHeJ_G0012182.1 mouse_genomes_project 3 108838790 108840102 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060727.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64770632 64782681 - Ccnl1 protein_coding retained_intron MGP_C3HHeJ_T0060728.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64770632 64782731 - MGP_C3HHeJ_P0060728 Ccnl1 protein_coding protein_coding MGP_C3HHeJ_T0060729.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64770632 64782644 - MGP_C3HHeJ_P0060729 Ccnl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060730.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64770632 64782651 - MGP_C3HHeJ_P0060730 Ccnl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060731.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64770676 64782514 - MGP_C3HHeJ_P0060731 Ccnl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060732.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64770990 64782645 - Ccnl1 protein_coding retained_intron MGP_C3HHeJ_T0060733.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64771263 64772480 - Ccnl1 protein_coding retained_intron MGP_C3HHeJ_T0060734.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64772435 64781338 - MGP_C3HHeJ_P0060734 Ccnl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060735.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64772989 64775460 - Ccnl1 protein_coding retained_intron MGP_C3HHeJ_T0060736.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64773373 64782663 - Ccnl1 protein_coding retained_intron MGP_C3HHeJ_T0060737.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64774382 64781371 - MGP_C3HHeJ_P0060737 Ccnl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060738.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64774888 64776350 - Ccnl1 protein_coding retained_intron MGP_C3HHeJ_T0060739.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64775730 64777475 - Ccnl1 protein_coding retained_intron MGP_C3HHeJ_T0060740.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64775915 64782135 - Ccnl1 protein_coding retained_intron MGP_C3HHeJ_T0060741.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64779727 64782385 - MGP_C3HHeJ_P0060741 Ccnl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0004179.1 MGP_C3HHeJ_G0003673.1 mouse_genomes_project 3 60876455 60879464 - 9330121J05Rik antisense antisense MGP_C3HHeJ_T0007582.1 MGP_C3HHeJ_G0006198.1 mouse_genomes_project 3 112963899 113184556 + lincRNA lincRNA MGP_C3HHeJ_T0013760.1 MGP_C3HHeJ_G0011864.1 mouse_genomes_project 3 6949787 6950170 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001102.1 MGP_C3HHeJ_G0001036.1 mouse_genomes_project 3 29616045 29618992 + TEC TEC MGP_C3HHeJ_T0062862.1 MGP_C3HHeJ_G0027480.1 mouse_genomes_project 3 109463043 109552486 - MGP_C3HHeJ_P0062862 5330417C22Rik protein_coding protein_coding MGP_C3HHeJ_T0062863.1 MGP_C3HHeJ_G0027480.1 mouse_genomes_project 3 109465426 109552573 - MGP_C3HHeJ_P0062863 5330417C22Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062864.1 MGP_C3HHeJ_G0027480.1 mouse_genomes_project 3 109465532 109552577 - MGP_C3HHeJ_P0062864 5330417C22Rik protein_coding protein_coding MGP_C3HHeJ_T0062865.1 MGP_C3HHeJ_G0027480.1 mouse_genomes_project 3 109470881 109472310 - 5330417C22Rik protein_coding retained_intron MGP_C3HHeJ_T0062866.1 MGP_C3HHeJ_G0027480.1 mouse_genomes_project 3 109475157 109478077 - 5330417C22Rik protein_coding retained_intron MGP_C3HHeJ_T0062867.1 MGP_C3HHeJ_G0027480.1 mouse_genomes_project 3 109500146 109552497 - 5330417C22Rik protein_coding retained_intron MGP_C3HHeJ_T0098447.1 MGP_C3HHeJ_G0036652.1 mouse_genomes_project 3 105007426 105010514 - Gm43256 sense_intronic sense_intronic MGP_C3HHeJ_T0061799.1 MGP_C3HHeJ_G0027224.1 mouse_genomes_project 3 92543870 92545602 + MGP_C3HHeJ_P0061799 Lce1c protein_coding protein_coding MGP_C3HHeJ_T0062129.1 MGP_C3HHeJ_G0027300.1 mouse_genomes_project 3 96099435 96108313 - MGP_C3HHeJ_P0062129 Mrps21 protein_coding protein_coding MGP_C3HHeJ_T0062130.1 MGP_C3HHeJ_G0027300.1 mouse_genomes_project 3 96099455 96107413 - MGP_C3HHeJ_P0062130 Mrps21 protein_coding protein_coding MGP_C3HHeJ_T0062131.1 MGP_C3HHeJ_G0027300.1 mouse_genomes_project 3 96099457 96100109 - Mrps21 protein_coding processed_transcript MGP_C3HHeJ_T0062132.1 MGP_C3HHeJ_G0027300.1 mouse_genomes_project 3 96099685 96108161 - MGP_C3HHeJ_P0062132 Mrps21 protein_coding protein_coding MGP_C3HHeJ_T0001135.1 MGP_C3HHeJ_G0001069.1 mouse_genomes_project 3 42612857 42616716 + TEC TEC MGP_C3HHeJ_T0007418.1 MGP_C3HHeJ_G0006074.1 mouse_genomes_project 3 33036614 33056628 - Gm43003 lincRNA lincRNA MGP_C3HHeJ_T0014070.1 MGP_C3HHeJ_G0012174.1 mouse_genomes_project 3 105470497 105470840 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007365.1 MGP_C3HHeJ_G0006035.1 mouse_genomes_project 3 6333816 6343968 + 4930539M17Rik lincRNA lincRNA MGP_C3HHeJ_T0059927.1 MGP_C3HHeJ_G0026833.1 mouse_genomes_project 3 26649182 26718567 + MGP_C3HHeJ_P0059927 Egfem1 protein_coding protein_coding MGP_C3HHeJ_T0059928.1 MGP_C3HHeJ_G0026833.1 mouse_genomes_project 3 26649459 27148849 + MGP_C3HHeJ_P0059928 Egfem1 protein_coding protein_coding MGP_C3HHeJ_T0059929.1 MGP_C3HHeJ_G0026833.1 mouse_genomes_project 3 26649722 27245137 + Egfem1 protein_coding retained_intron MGP_C3HHeJ_T0059930.1 MGP_C3HHeJ_G0026833.1 mouse_genomes_project 3 26649878 27262758 + MGP_C3HHeJ_P0059930 Egfem1 protein_coding protein_coding MGP_C3HHeJ_T0059931.1 MGP_C3HHeJ_G0026833.1 mouse_genomes_project 3 26649916 27262059 + MGP_C3HHeJ_P0059931 Egfem1 protein_coding protein_coding MGP_C3HHeJ_T0059932.1 MGP_C3HHeJ_G0026833.1 mouse_genomes_project 3 27031503 27221313 + Egfem1 protein_coding processed_transcript MGP_C3HHeJ_T0059933.1 MGP_C3HHeJ_G0026833.1 mouse_genomes_project 3 27079447 27261927 + MGP_C3HHeJ_P0059933 Egfem1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0059934.1 MGP_C3HHeJ_G0026833.1 mouse_genomes_project 3 27079472 27244244 + MGP_C3HHeJ_P0059934 Egfem1 protein_coding protein_coding MGP_C3HHeJ_T0099308.1 MGP_C3HHeJ_G0037502.1 mouse_genomes_project 3 134330083 134330189 - Gm25307 snRNA snRNA MGP_C3HHeJ_T0061517.1 MGP_C3HHeJ_G0027150.1 mouse_genomes_project 3 88922285 88931829 - MGP_C3HHeJ_P0061517 Zbtb7b protein_coding protein_coding MGP_C3HHeJ_T0061518.1 MGP_C3HHeJ_G0027150.1 mouse_genomes_project 3 88922285 88937947 - MGP_C3HHeJ_P0061518 Zbtb7b protein_coding protein_coding MGP_C3HHeJ_T0061519.1 MGP_C3HHeJ_G0027150.1 mouse_genomes_project 3 88922285 88936727 - MGP_C3HHeJ_P0061519 Zbtb7b protein_coding protein_coding MGP_C3HHeJ_T0061520.1 MGP_C3HHeJ_G0027150.1 mouse_genomes_project 3 88922285 88932311 - MGP_C3HHeJ_P0061520 Zbtb7b protein_coding protein_coding MGP_C3HHeJ_T0061521.1 MGP_C3HHeJ_G0027150.1 mouse_genomes_project 3 88925779 88938256 - MGP_C3HHeJ_P0061521 Zbtb7b protein_coding protein_coding MGP_C3HHeJ_T0061522.1 MGP_C3HHeJ_G0027150.1 mouse_genomes_project 3 88926063 88938213 - MGP_C3HHeJ_P0061522 Zbtb7b protein_coding protein_coding MGP_C3HHeJ_T0061523.1 MGP_C3HHeJ_G0027150.1 mouse_genomes_project 3 88937170 88939354 - Zbtb7b protein_coding processed_transcript MGP_C3HHeJ_T0001296.1 MGP_C3HHeJ_G0001228.1 mouse_genomes_project 3 128790345 128792897 - TEC TEC MGP_C3HHeJ_T0007578.1 MGP_C3HHeJ_G0006194.1 mouse_genomes_project 3 109154486 109176269 + Gm12524 lincRNA lincRNA MGP_C3HHeJ_T0004295.1 MGP_C3HHeJ_G0003747.1 mouse_genomes_project 3 129223981 129225314 - Gm43729 antisense antisense MGP_C3HHeJ_T0010463.1 MGP_C3HHeJ_G0008596.1 mouse_genomes_project 3 123847230 123847349 - Mir760 miRNA miRNA MGP_C3HHeJ_T0007466.1 MGP_C3HHeJ_G0006110.1 mouse_genomes_project 3 52956398 52959591 + Gm26678 lincRNA lincRNA MGP_C3HHeJ_T0013785.1 MGP_C3HHeJ_G0011889.1 mouse_genomes_project 3 13166589 13167650 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014068.1 MGP_C3HHeJ_G0012172.1 mouse_genomes_project 3 104947394 104948232 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061773.1 MGP_C3HHeJ_G0027201.1 mouse_genomes_project 3 91958878 91960600 - MGP_C3HHeJ_P0061773 Prr9 protein_coding protein_coding MGP_C3HHeJ_T0013965.1 MGP_C3HHeJ_G0012069.1 mouse_genomes_project 3 73001166 73002243 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013840.1 MGP_C3HHeJ_G0011944.1 mouse_genomes_project 3 34921670 34922366 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059752.1 MGP_C3HHeJ_G0026793.1 mouse_genomes_project 3 12717401 12754243 - MGP_C3HHeJ_P0059752 Gm9733 protein_coding protein_coding MGP_C3HHeJ_T0014012.1 MGP_C3HHeJ_G0012116.1 mouse_genomes_project 3 91857670 91858015 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063822.1 MGP_C3HHeJ_G0027662.1 mouse_genomes_project 3 147951091 147954136 - MGP_C3HHeJ_P0063822 Cyr61 protein_coding protein_coding MGP_C3HHeJ_T0010454.1 MGP_C3HHeJ_G0008587.1 mouse_genomes_project 3 98044251 98044305 - Mir7225 miRNA miRNA MGP_C3HHeJ_T0062410.1 MGP_C3HHeJ_G0027377.1 mouse_genomes_project 3 102254707 102283943 - MGP_C3HHeJ_P0062410 Atp1a1 protein_coding protein_coding MGP_C3HHeJ_T0062411.1 MGP_C3HHeJ_G0027377.1 mouse_genomes_project 3 102254804 102256051 - Atp1a1 protein_coding retained_intron MGP_C3HHeJ_T0062412.1 MGP_C3HHeJ_G0027377.1 mouse_genomes_project 3 102264280 102267522 - Atp1a1 protein_coding retained_intron MGP_C3HHeJ_T0063878.1 MGP_C3HHeJ_G0027677.1 mouse_genomes_project 3 148944691 148980348 - MGP_C3HHeJ_P0063878 Dnase2b protein_coding protein_coding MGP_C3HHeJ_T0063879.1 MGP_C3HHeJ_G0027677.1 mouse_genomes_project 3 148944691 148961355 - MGP_C3HHeJ_P0063879 Dnase2b protein_coding protein_coding MGP_C3HHeJ_T0004281.1 MGP_C3HHeJ_G0003737.1 mouse_genomes_project 3 117925086 117925625 + Gm42457 antisense antisense MGP_C3HHeJ_T0013820.1 MGP_C3HHeJ_G0011924.1 mouse_genomes_project 3 27488320 27488759 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013837.1 MGP_C3HHeJ_G0011941.1 mouse_genomes_project 3 34367983 34368682 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101961.1 MGP_C3HHeJ_G0039926.1 mouse_genomes_project 3 90486559 90488442 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014077.1 MGP_C3HHeJ_G0012181.1 mouse_genomes_project 3 108748493 108749109 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061187.1 MGP_C3HHeJ_G0027096.1 mouse_genomes_project 3 87563137 87576617 + MGP_C3HHeJ_P0061187 Gpatch4 protein_coding protein_coding MGP_C3HHeJ_T0061188.1 MGP_C3HHeJ_G0027096.1 mouse_genomes_project 3 87563137 87576614 + MGP_C3HHeJ_P0061188 Gpatch4 protein_coding protein_coding MGP_C3HHeJ_T0061189.1 MGP_C3HHeJ_G0027096.1 mouse_genomes_project 3 87563138 87575284 + Gpatch4 protein_coding retained_intron MGP_C3HHeJ_T0061190.1 MGP_C3HHeJ_G0027096.1 mouse_genomes_project 3 87563153 87575824 + MGP_C3HHeJ_P0061190 Gpatch4 protein_coding protein_coding MGP_C3HHeJ_T0061191.1 MGP_C3HHeJ_G0027096.1 mouse_genomes_project 3 87563157 87576600 + MGP_C3HHeJ_P0061191 Gpatch4 protein_coding protein_coding MGP_C3HHeJ_T0101975.1 MGP_C3HHeJ_G0039940.1 mouse_genomes_project 3 108927157 108929484 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014086.1 MGP_C3HHeJ_G0012190.1 mouse_genomes_project 3 110241135 110242000 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013911.1 MGP_C3HHeJ_G0012015.1 mouse_genomes_project 3 57078503 57080307 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062369.1 MGP_C3HHeJ_G0027366.1 mouse_genomes_project 3 100732391 100757545 - MGP_C3HHeJ_P0062369 Wdr3 protein_coding protein_coding MGP_C3HHeJ_T0062370.1 MGP_C3HHeJ_G0027366.1 mouse_genomes_project 3 100732946 100735833 - Wdr3 protein_coding retained_intron MGP_C3HHeJ_T0062371.1 MGP_C3HHeJ_G0027366.1 mouse_genomes_project 3 100736710 100757545 - Wdr3 protein_coding retained_intron MGP_C3HHeJ_T0062372.1 MGP_C3HHeJ_G0027366.1 mouse_genomes_project 3 100736712 100737794 - Wdr3 protein_coding retained_intron MGP_C3HHeJ_T0062373.1 MGP_C3HHeJ_G0027366.1 mouse_genomes_project 3 100751546 100757535 - MGP_C3HHeJ_P0062373 Wdr3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062374.1 MGP_C3HHeJ_G0027366.1 mouse_genomes_project 3 100751546 100757470 - MGP_C3HHeJ_P0062374 Wdr3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001340.1 MGP_C3HHeJ_G0001271.1 mouse_genomes_project 3 153629089 153633517 - TEC TEC MGP_C3HHeJ_T0001199.1 MGP_C3HHeJ_G0001131.1 mouse_genomes_project 3 64307930 64308879 - TEC TEC MGP_C3HHeJ_T0061363.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88438685 88440594 - Dap3 protein_coding retained_intron MGP_C3HHeJ_T0061364.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88438685 88464838 - MGP_C3HHeJ_P0061364 Dap3 protein_coding protein_coding MGP_C3HHeJ_T0061365.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88438812 88446037 - MGP_C3HHeJ_P0061365 Dap3 protein_coding protein_coding MGP_C3HHeJ_T0061366.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88438848 88446070 - MGP_C3HHeJ_P0061366 Dap3 protein_coding protein_coding MGP_C3HHeJ_T0061367.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88438878 88464757 - MGP_C3HHeJ_P0061367 Dap3 protein_coding protein_coding MGP_C3HHeJ_T0061368.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88443525 88465185 - MGP_C3HHeJ_P0061368 Dap3 protein_coding protein_coding MGP_C3HHeJ_T0061369.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88443559 88465999 - MGP_C3HHeJ_P0061369 Dap3 protein_coding protein_coding MGP_C3HHeJ_T0061370.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88444494 88465158 - MGP_C3HHeJ_P0061370 Dap3 protein_coding protein_coding MGP_C3HHeJ_T0061371.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88444542 88464793 - MGP_C3HHeJ_P0061371 Dap3 protein_coding protein_coding MGP_C3HHeJ_T0061372.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88448482 88453401 - MGP_C3HHeJ_P0061372 Dap3 protein_coding protein_coding MGP_C3HHeJ_T0061373.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88463939 88465928 - Dap3 protein_coding processed_transcript MGP_C3HHeJ_T0061375.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88465534 88466000 - Dap3 protein_coding processed_transcript MGP_C3HHeJ_T0013861.1 MGP_C3HHeJ_G0011965.1 mouse_genomes_project 3 40503725 40504212 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014135.1 MGP_C3HHeJ_G0012239.1 mouse_genomes_project 3 126142978 126145615 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013866.1 MGP_C3HHeJ_G0011970.1 mouse_genomes_project 3 42669324 42669712 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060991.1 MGP_C3HHeJ_G0027053.1 mouse_genomes_project 3 83075448 83083441 + MGP_C3HHeJ_P0060991 Sfrp2 protein_coding protein_coding MGP_C3HHeJ_T0060992.1 MGP_C3HHeJ_G0027053.1 mouse_genomes_project 3 83075692 83079271 + Sfrp2 protein_coding processed_transcript MGP_C3HHeJ_T0060993.1 MGP_C3HHeJ_G0027053.1 mouse_genomes_project 3 83075980 83081281 + Sfrp2 protein_coding processed_transcript MGP_C3HHeJ_T0061153.1 MGP_C3HHeJ_G0027089.1 mouse_genomes_project 3 87425984 87430164 + MGP_C3HHeJ_P0061153 Mrpl24 protein_coding protein_coding MGP_C3HHeJ_T0061154.1 MGP_C3HHeJ_G0027089.1 mouse_genomes_project 3 87425984 87430154 + MGP_C3HHeJ_P0061154 Mrpl24 protein_coding protein_coding MGP_C3HHeJ_T0061155.1 MGP_C3HHeJ_G0027089.1 mouse_genomes_project 3 87426014 87428544 + MGP_C3HHeJ_P0061155 Mrpl24 protein_coding protein_coding MGP_C3HHeJ_T0061156.1 MGP_C3HHeJ_G0027089.1 mouse_genomes_project 3 87426035 87427000 + Mrpl24 protein_coding retained_intron MGP_C3HHeJ_T0061157.1 MGP_C3HHeJ_G0027089.1 mouse_genomes_project 3 87426041 87430164 + MGP_C3HHeJ_P0061157 Mrpl24 protein_coding protein_coding MGP_C3HHeJ_T0061158.1 MGP_C3HHeJ_G0027089.1 mouse_genomes_project 3 87428139 87430164 + MGP_C3HHeJ_P0061158 Mrpl24 protein_coding protein_coding MGP_C3HHeJ_T0007370.1 MGP_C3HHeJ_G0006038.1 mouse_genomes_project 3 7343958 7346957 - Gm38335 lincRNA lincRNA MGP_C3HHeJ_T0010431.1 MGP_C3HHeJ_G0008564.1 mouse_genomes_project 3 55985702 55985816 + Mir6377 miRNA miRNA MGP_C3HHeJ_T0063742.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144906318 144998683 - MGP_C3HHeJ_P0063742 Pkn2 protein_coding protein_coding MGP_C3HHeJ_T0063743.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144909127 144998594 - MGP_C3HHeJ_P0063743 Pkn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063744.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144909229 144998337 - MGP_C3HHeJ_P0063744 Pkn2 protein_coding protein_coding MGP_C3HHeJ_T0063745.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144909229 144998337 - MGP_C3HHeJ_P0063745 Pkn2 protein_coding protein_coding MGP_C3HHeJ_T0063746.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144915342 144998599 - Pkn2 protein_coding processed_transcript MGP_C3HHeJ_T0063747.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144915424 144918492 - Pkn2 protein_coding retained_intron MGP_C3HHeJ_T0063748.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144920632 144998669 - Pkn2 protein_coding processed_transcript MGP_C3HHeJ_T0063749.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144925989 144937946 - MGP_C3HHeJ_P0063749 Pkn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063750.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144927106 144928930 - Pkn2 protein_coding retained_intron MGP_C3HHeJ_T0063751.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144927900 144945637 - MGP_C3HHeJ_P0063751 Pkn2 protein_coding protein_coding MGP_C3HHeJ_T0063752.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144937656 144945600 - Pkn2 protein_coding retained_intron MGP_C3HHeJ_T0063753.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144946577 144998662 - Pkn2 protein_coding retained_intron MGP_C3HHeJ_T0063754.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144969648 144972441 - Pkn2 protein_coding retained_intron MGP_C3HHeJ_T0010429.1 MGP_C3HHeJ_G0008562.1 mouse_genomes_project 3 44954772 44954887 - Mir6379 miRNA miRNA MGP_C3HHeJ_T0062217.1 MGP_C3HHeJ_G0027328.1 mouse_genomes_project 3 96928575 96932440 + MGP_C3HHeJ_P0062217 Rbm8a protein_coding protein_coding MGP_C3HHeJ_T0062218.1 MGP_C3HHeJ_G0027328.1 mouse_genomes_project 3 96928582 96932440 + MGP_C3HHeJ_P0062218 Rbm8a protein_coding protein_coding MGP_C3HHeJ_T0062219.1 MGP_C3HHeJ_G0027328.1 mouse_genomes_project 3 96928604 96930378 + MGP_C3HHeJ_P0062219 Rbm8a protein_coding protein_coding MGP_C3HHeJ_T0062220.1 MGP_C3HHeJ_G0027328.1 mouse_genomes_project 3 96928615 96929197 + Rbm8a protein_coding retained_intron MGP_C3HHeJ_T0062221.1 MGP_C3HHeJ_G0027328.1 mouse_genomes_project 3 96929864 96930544 + Rbm8a protein_coding retained_intron MGP_C3HHeJ_T0014152.1 MGP_C3HHeJ_G0012256.1 mouse_genomes_project 3 133209300 133209495 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001369.1 MGP_C3HHeJ_G0001300.1 mouse_genomes_project 3 162653137 162655508 + TEC TEC MGP_C3HHeJ_T0001287.1 MGP_C3HHeJ_G0001219.1 mouse_genomes_project 3 128284901 128287781 + TEC TEC MGP_C3HHeJ_T0062048.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95630160 95698296 + Arnt protein_coding retained_intron MGP_C3HHeJ_T0062049.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95630160 95702241 + MGP_C3HHeJ_P0062049 Arnt protein_coding protein_coding MGP_C3HHeJ_T0062050.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95630162 95703914 + MGP_C3HHeJ_P0062050 Arnt protein_coding protein_coding MGP_C3HHeJ_T0062051.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95630176 95703911 + MGP_C3HHeJ_P0062051 Arnt protein_coding protein_coding MGP_C3HHeJ_T0062052.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95630200 95702245 + MGP_C3HHeJ_P0062052 Arnt protein_coding protein_coding MGP_C3HHeJ_T0062053.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95630200 95660011 + MGP_C3HHeJ_P0062053 Arnt protein_coding protein_coding MGP_C3HHeJ_T0062054.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95630291 95699364 + Arnt protein_coding retained_intron MGP_C3HHeJ_T0062055.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95665430 95702241 + Arnt protein_coding retained_intron MGP_C3HHeJ_T0062056.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95672196 95680071 + Arnt protein_coding retained_intron MGP_C3HHeJ_T0062057.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95674715 95692320 + MGP_C3HHeJ_P0062057 Arnt protein_coding protein_coding MGP_C3HHeJ_T0062058.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95696078 95697080 + Arnt protein_coding retained_intron MGP_C3HHeJ_T0004299.1 MGP_C3HHeJ_G0003750.1 mouse_genomes_project 3 131500269 131511661 + Gm42697 antisense antisense MGP_C3HHeJ_T0013737.1 MGP_C3HHeJ_G0011841.1 mouse_genomes_project 3 897293 897692 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014170.1 MGP_C3HHeJ_G0012274.1 mouse_genomes_project 3 137893267 137893567 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013978.1 MGP_C3HHeJ_G0012082.1 mouse_genomes_project 3 77272636 77273185 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001282.1 MGP_C3HHeJ_G0001214.1 mouse_genomes_project 3 126778007 126781583 - TEC TEC MGP_C3HHeJ_T0001288.1 MGP_C3HHeJ_G0001220.1 mouse_genomes_project 3 128290870 128291522 + TEC TEC MGP_C3HHeJ_T0063424.1 MGP_C3HHeJ_G0027582.1 mouse_genomes_project 3 132506301 132520480 - MGP_C3HHeJ_P0063424 Ostc protein_coding protein_coding MGP_C3HHeJ_T0063425.1 MGP_C3HHeJ_G0027582.1 mouse_genomes_project 3 132506308 132507009 - Ostc protein_coding retained_intron MGP_C3HHeJ_T0063426.1 MGP_C3HHeJ_G0027582.1 mouse_genomes_project 3 132518752 132520452 - Ostc protein_coding retained_intron MGP_C3HHeJ_T0059691.1 MGP_C3HHeJ_G0026772.1 mouse_genomes_project 3 7334169 7338256 + MGP_C3HHeJ_P0059691 Fabp5 protein_coding protein_coding MGP_C3HHeJ_T0059692.1 MGP_C3HHeJ_G0026772.1 mouse_genomes_project 3 7334226 7337984 + Fabp5 protein_coding retained_intron MGP_C3HHeJ_T0099255.1 MGP_C3HHeJ_G0037449.1 mouse_genomes_project 3 57403822 57403924 + Gm22491 snRNA snRNA MGP_C3HHeJ_T0014166.1 MGP_C3HHeJ_G0012270.1 mouse_genomes_project 3 137098084 137098509 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014014.1 MGP_C3HHeJ_G0012118.1 mouse_genomes_project 3 92174371 92174672 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098419.1 MGP_C3HHeJ_G0036624.1 mouse_genomes_project 3 101245079 101247200 - Gm42869 sense_intronic sense_intronic MGP_C3HHeJ_T0101204.1 MGP_C3HHeJ_G0039341.1 mouse_genomes_project 3 145015457 145015976 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0011450.1 MGP_C3HHeJ_G0009583.1 mouse_genomes_project 3 96674438 96674861 - Terc misc_RNA misc_RNA MGP_C3HHeJ_T0061787.1 MGP_C3HHeJ_G0027214.1 mouse_genomes_project 3 92343502 92345446 - MGP_C3HHeJ_P0061787 Sprr1a protein_coding protein_coding MGP_C3HHeJ_T0098584.1 MGP_C3HHeJ_G0036779.1 mouse_genomes_project 3 157339431 157362871 + Gm38139 sense_overlapping sense_overlapping MGP_C3HHeJ_T0013941.1 MGP_C3HHeJ_G0012045.1 mouse_genomes_project 3 66459488 66460436 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059694.1 MGP_C3HHeJ_G0026774.1 mouse_genomes_project 3 7511698 7529122 - MGP_C3HHeJ_P0059694 Gm37389 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061978.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95325342 95329429 + Sema6c protein_coding processed_transcript MGP_C3HHeJ_T0061979.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95325379 95329314 + Sema6c protein_coding processed_transcript MGP_C3HHeJ_T0061980.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95325379 95338536 + MGP_C3HHeJ_P0061980 Sema6c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061981.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95325379 95333232 + MGP_C3HHeJ_P0061981 Sema6c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061982.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95325386 95329368 + MGP_C3HHeJ_P0061982 Sema6c protein_coding protein_coding MGP_C3HHeJ_T0061983.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95325390 95338907 + Sema6c protein_coding retained_intron MGP_C3HHeJ_T0061984.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95325390 95338907 + MGP_C3HHeJ_P0061984 Sema6c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061985.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95325390 95338907 + MGP_C3HHeJ_P0061985 Sema6c protein_coding protein_coding MGP_C3HHeJ_T0061986.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95325519 95338171 + MGP_C3HHeJ_P0061986 Sema6c protein_coding unknown_likely_coding MGP_C3HHeJ_T0061987.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95329192 95338745 + MGP_C3HHeJ_P0061987 Sema6c protein_coding protein_coding MGP_C3HHeJ_T0061988.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95329192 95338907 + MGP_C3HHeJ_P0061988 Sema6c protein_coding protein_coding MGP_C3HHeJ_T0061989.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95333097 95335023 + Sema6c protein_coding processed_transcript MGP_C3HHeJ_T0061990.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95335205 95336778 + Sema6c protein_coding retained_intron MGP_C3HHeJ_T0061991.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95335687 95336859 + Sema6c protein_coding retained_intron MGP_C3HHeJ_T0061731.1 MGP_C3HHeJ_G0027183.1 mouse_genomes_project 3 90128138 90131497 - MGP_C3HHeJ_P0061731 S100a1 protein_coding protein_coding MGP_C3HHeJ_T0061732.1 MGP_C3HHeJ_G0027183.1 mouse_genomes_project 3 90128141 90131383 - MGP_C3HHeJ_P0061732 S100a1 protein_coding protein_coding MGP_C3HHeJ_T0062074.1 MGP_C3HHeJ_G0027293.1 mouse_genomes_project 3 95844138 95845136 + Ensa protein_coding TEC MGP_C3HHeJ_T0062075.1 MGP_C3HHeJ_G0027293.1 mouse_genomes_project 3 95844156 95851248 + MGP_C3HHeJ_P0062075 Ensa protein_coding protein_coding MGP_C3HHeJ_T0062076.1 MGP_C3HHeJ_G0027293.1 mouse_genomes_project 3 95844165 95851248 + MGP_C3HHeJ_P0062076 Ensa protein_coding protein_coding MGP_C3HHeJ_T0062077.1 MGP_C3HHeJ_G0027293.1 mouse_genomes_project 3 95844171 95846680 + Ensa protein_coding retained_intron MGP_C3HHeJ_T0061482.1 MGP_C3HHeJ_G0027143.1 mouse_genomes_project 3 88808050 88810328 - Slc50a1 protein_coding retained_intron MGP_C3HHeJ_T0061483.1 MGP_C3HHeJ_G0027143.1 mouse_genomes_project 3 88808050 88810331 - Slc50a1 protein_coding retained_intron MGP_C3HHeJ_T0061484.1 MGP_C3HHeJ_G0027143.1 mouse_genomes_project 3 88808050 88810300 - MGP_C3HHeJ_P0061484 Slc50a1 protein_coding protein_coding MGP_C3HHeJ_T0061485.1 MGP_C3HHeJ_G0027143.1 mouse_genomes_project 3 88808050 88810375 - MGP_C3HHeJ_P0061485 Slc50a1 protein_coding protein_coding MGP_C3HHeJ_T0061486.1 MGP_C3HHeJ_G0027143.1 mouse_genomes_project 3 88808050 88810284 - MGP_C3HHeJ_P0061486 Slc50a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061487.1 MGP_C3HHeJ_G0027143.1 mouse_genomes_project 3 88808052 88810330 - Slc50a1 protein_coding retained_intron MGP_C3HHeJ_T0061488.1 MGP_C3HHeJ_G0027143.1 mouse_genomes_project 3 88808052 88810374 - Slc50a1 protein_coding retained_intron MGP_C3HHeJ_T0061489.1 MGP_C3HHeJ_G0027143.1 mouse_genomes_project 3 88808875 88810375 - MGP_C3HHeJ_P0061489 Slc50a1 protein_coding protein_coding MGP_C3HHeJ_T0061490.1 MGP_C3HHeJ_G0027143.1 mouse_genomes_project 3 88808949 88810032 - Slc50a1 protein_coding processed_transcript MGP_C3HHeJ_T0014010.1 MGP_C3HHeJ_G0012114.1 mouse_genomes_project 3 90397109 90397941 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062425.1 MGP_C3HHeJ_G0027381.1 mouse_genomes_project 3 102787676 102846521 + MGP_C3HHeJ_P0062425 Casq2 protein_coding protein_coding MGP_C3HHeJ_T0062426.1 MGP_C3HHeJ_G0027381.1 mouse_genomes_project 3 102787807 102846521 + MGP_C3HHeJ_P0062426 Casq2 protein_coding protein_coding MGP_C3HHeJ_T0062427.1 MGP_C3HHeJ_G0027381.1 mouse_genomes_project 3 102787900 102845339 + MGP_C3HHeJ_P0062427 Casq2 protein_coding protein_coding MGP_C3HHeJ_T0062428.1 MGP_C3HHeJ_G0027381.1 mouse_genomes_project 3 102825527 102845356 + Casq2 protein_coding processed_transcript MGP_C3HHeJ_T0062429.1 MGP_C3HHeJ_G0027381.1 mouse_genomes_project 3 102844058 102845593 + Casq2 protein_coding retained_intron MGP_C3HHeJ_T0007585.1 MGP_C3HHeJ_G0006200.1 mouse_genomes_project 3 117420610 117436487 + Gm26544 lincRNA lincRNA MGP_C3HHeJ_T0013780.1 MGP_C3HHeJ_G0011884.1 mouse_genomes_project 3 11851551 11858060 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014163.1 MGP_C3HHeJ_G0012267.1 mouse_genomes_project 3 136862168 136862685 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004309.1 MGP_C3HHeJ_G0003758.1 mouse_genomes_project 3 137831230 137856619 + antisense antisense MGP_C3HHeJ_T0004310.1 MGP_C3HHeJ_G0003758.1 mouse_genomes_project 3 137855849 138103899 + antisense antisense MGP_C3HHeJ_T0100561.1 MGP_C3HHeJ_G0038755.1 mouse_genomes_project 3 95249517 95249602 - Gm24920 snoRNA snoRNA MGP_C3HHeJ_T0100536.1 MGP_C3HHeJ_G0038730.1 mouse_genomes_project 3 49004723 49004858 - Gm24503 snoRNA snoRNA MGP_C3HHeJ_T0061830.1 MGP_C3HHeJ_G0027248.1 mouse_genomes_project 3 93417337 93424182 + MGP_C3HHeJ_P0061830 S100a11 protein_coding protein_coding MGP_C3HHeJ_T0063375.1 MGP_C3HHeJ_G0027573.1 mouse_genomes_project 3 131581410 131600220 - Rrh protein_coding processed_transcript MGP_C3HHeJ_T0063376.1 MGP_C3HHeJ_G0027573.1 mouse_genomes_project 3 131585657 131600232 - MGP_C3HHeJ_P0063376 Rrh protein_coding protein_coding MGP_C3HHeJ_T0063377.1 MGP_C3HHeJ_G0027573.1 mouse_genomes_project 3 131585660 131600218 - MGP_C3HHeJ_P0063377 Rrh protein_coding protein_coding MGP_C3HHeJ_T0063378.1 MGP_C3HHeJ_G0027573.1 mouse_genomes_project 3 131585886 131600314 - MGP_C3HHeJ_P0063378 Rrh protein_coding protein_coding MGP_C3HHeJ_T0063379.1 MGP_C3HHeJ_G0027573.1 mouse_genomes_project 3 131585994 131600189 - MGP_C3HHeJ_P0063379 Rrh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063380.1 MGP_C3HHeJ_G0027573.1 mouse_genomes_project 3 131591691 131600221 - Rrh protein_coding processed_transcript MGP_C3HHeJ_T0063381.1 MGP_C3HHeJ_G0027573.1 mouse_genomes_project 3 131597186 131600185 - Rrh protein_coding retained_intron MGP_C3HHeJ_T0007592.1 MGP_C3HHeJ_G0006207.1 mouse_genomes_project 3 119845123 119846351 + Gm9916 lincRNA lincRNA MGP_C3HHeJ_T0061032.1 MGP_C3HHeJ_G0027060.1 mouse_genomes_project 3 83844179 83934046 - MGP_C3HHeJ_P0061032 protein_coding protein_coding MGP_C3HHeJ_T0061034.1 MGP_C3HHeJ_G0027060.1 mouse_genomes_project 3 83845290 83933997 - MGP_C3HHeJ_P0061034 protein_coding protein_coding MGP_C3HHeJ_T0061035.1 MGP_C3HHeJ_G0027060.1 mouse_genomes_project 3 83845822 83934137 - MGP_C3HHeJ_P0061035 protein_coding protein_coding MGP_C3HHeJ_T0014168.1 MGP_C3HHeJ_G0012272.1 mouse_genomes_project 3 137438982 137439833 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010433.1 MGP_C3HHeJ_G0008566.1 mouse_genomes_project 3 67853799 67853863 + Mir15b miRNA miRNA MGP_C3HHeJ_T0061878.1 MGP_C3HHeJ_G0027260.1 mouse_genomes_project 3 94585047 94667574 - MGP_C3HHeJ_P0061878 Snx27 protein_coding protein_coding MGP_C3HHeJ_T0061879.1 MGP_C3HHeJ_G0027260.1 mouse_genomes_project 3 94586815 94667407 - MGP_C3HHeJ_P0061879 Snx27 protein_coding protein_coding MGP_C3HHeJ_T0061880.1 MGP_C3HHeJ_G0027260.1 mouse_genomes_project 3 94588544 94612285 - Snx27 protein_coding processed_transcript MGP_C3HHeJ_T0061881.1 MGP_C3HHeJ_G0027260.1 mouse_genomes_project 3 94588630 94667537 - MGP_C3HHeJ_P0061881 Snx27 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061882.1 MGP_C3HHeJ_G0027260.1 mouse_genomes_project 3 94588640 94607094 - Snx27 protein_coding processed_transcript MGP_C3HHeJ_T0061883.1 MGP_C3HHeJ_G0027260.1 mouse_genomes_project 3 94589559 94644582 - MGP_C3HHeJ_P0061883 Snx27 protein_coding protein_coding MGP_C3HHeJ_T0061884.1 MGP_C3HHeJ_G0027260.1 mouse_genomes_project 3 94607112 94644345 - MGP_C3HHeJ_P0061884 Snx27 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061885.1 MGP_C3HHeJ_G0027260.1 mouse_genomes_project 3 94620454 94621103 - Snx27 protein_coding processed_transcript MGP_C3HHeJ_T0098453.1 MGP_C3HHeJ_G0036658.1 mouse_genomes_project 3 105675694 105677190 - Gm42658 sense_intronic sense_intronic MGP_C3HHeJ_T0007581.1 MGP_C3HHeJ_G0006197.1 mouse_genomes_project 3 110119122 110120949 - 4930408K08Rik lincRNA lincRNA MGP_C3HHeJ_T0099236.1 MGP_C3HHeJ_G0037430.1 mouse_genomes_project 3 14077000 14077064 - Gm26485 snRNA snRNA MGP_C3HHeJ_T0011437.1 MGP_C3HHeJ_G0009570.1 mouse_genomes_project 3 22112654 22112920 + Gm24062 misc_RNA misc_RNA MGP_C3HHeJ_T0060702.1 MGP_C3HHeJ_G0026983.1 mouse_genomes_project 3 62748653 62771077 - MGP_C3HHeJ_P0060702 protein_coding protein_coding MGP_C3HHeJ_T0060703.1 MGP_C3HHeJ_G0026983.1 mouse_genomes_project 3 62748653 62781653 - MGP_C3HHeJ_P0060703 protein_coding protein_coding MGP_C3HHeJ_T0064108.1 MGP_C3HHeJ_G0027709.1 mouse_genomes_project 3 157799955 157809143 + Lrriq3 protein_coding retained_intron MGP_C3HHeJ_T0064109.1 MGP_C3HHeJ_G0027709.1 mouse_genomes_project 3 157799955 157898584 + MGP_C3HHeJ_P0064109 Lrriq3 protein_coding protein_coding MGP_C3HHeJ_T0064110.1 MGP_C3HHeJ_G0027709.1 mouse_genomes_project 3 157800059 157886512 + MGP_C3HHeJ_P0064110 Lrriq3 protein_coding protein_coding MGP_C3HHeJ_T0064111.1 MGP_C3HHeJ_G0027709.1 mouse_genomes_project 3 157800109 157844128 + MGP_C3HHeJ_P0064111 Lrriq3 protein_coding protein_coding MGP_C3HHeJ_T0001308.1 MGP_C3HHeJ_G0001239.1 mouse_genomes_project 3 131109978 131111080 + TEC TEC MGP_C3HHeJ_T0060141.1 MGP_C3HHeJ_G0026870.1 mouse_genomes_project 3 33875126 33903858 + MGP_C3HHeJ_P0060141 Acad9 protein_coding protein_coding MGP_C3HHeJ_T0060142.1 MGP_C3HHeJ_G0026870.1 mouse_genomes_project 3 33875214 33884804 + MGP_C3HHeJ_P0060142 Acad9 protein_coding protein_coding MGP_C3HHeJ_T0060143.1 MGP_C3HHeJ_G0026870.1 mouse_genomes_project 3 33875219 33901816 + Acad9 protein_coding retained_intron MGP_C3HHeJ_T0060144.1 MGP_C3HHeJ_G0026870.1 mouse_genomes_project 3 33885552 33889490 + Acad9 protein_coding retained_intron MGP_C3HHeJ_T0060145.1 MGP_C3HHeJ_G0026870.1 mouse_genomes_project 3 33887235 33899602 + MGP_C3HHeJ_P0060145 Acad9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060146.1 MGP_C3HHeJ_G0026870.1 mouse_genomes_project 3 33888929 33899254 + Acad9 protein_coding retained_intron MGP_C3HHeJ_T0060147.1 MGP_C3HHeJ_G0026870.1 mouse_genomes_project 3 33889004 33901816 + Acad9 protein_coding retained_intron MGP_C3HHeJ_T0001280.1 MGP_C3HHeJ_G0001212.1 mouse_genomes_project 3 125955116 125955362 - TEC TEC MGP_C3HHeJ_T0098409.1 MGP_C3HHeJ_G0036614.1 mouse_genomes_project 3 89640042 89640969 + Gm16540 sense_intronic sense_intronic MGP_C3HHeJ_T0017735.1 MGP_C3HHeJ_G0015267.1 mouse_genomes_project 3 50413085 50414470 + Gm38132 processed_transcript lincRNA MGP_C3HHeJ_T0017736.1 MGP_C3HHeJ_G0015267.1 mouse_genomes_project 3 50413114 50414127 + Gm38132 processed_transcript retained_intron MGP_C3HHeJ_T0062788.1 MGP_C3HHeJ_G0027462.1 mouse_genomes_project 3 108940060 108946456 - MGP_C3HHeJ_P0062788 Gstm3 protein_coding protein_coding MGP_C3HHeJ_T0060384.1 MGP_C3HHeJ_G0026911.1 mouse_genomes_project 3 49596161 49601381 - MGP_C3HHeJ_P0060384 Ndufc1 protein_coding protein_coding MGP_C3HHeJ_T0060385.1 MGP_C3HHeJ_G0026911.1 mouse_genomes_project 3 49596941 49599874 - Ndufc1 protein_coding retained_intron MGP_C3HHeJ_T0060386.1 MGP_C3HHeJ_G0026911.1 mouse_genomes_project 3 49596964 49601059 - Ndufc1 protein_coding processed_transcript MGP_C3HHeJ_T0060387.1 MGP_C3HHeJ_G0026911.1 mouse_genomes_project 3 49597068 49601357 - MGP_C3HHeJ_P0060387 Ndufc1 protein_coding protein_coding MGP_C3HHeJ_T0010436.1 MGP_C3HHeJ_G0008569.1 mouse_genomes_project 3 81352613 81352676 - Mir7010 miRNA miRNA MGP_C3HHeJ_T0060323.1 MGP_C3HHeJ_G0026902.1 mouse_genomes_project 3 39526967 39644561 - MGP_C3HHeJ_P0060323 Sclt1 protein_coding protein_coding MGP_C3HHeJ_T0060324.1 MGP_C3HHeJ_G0026902.1 mouse_genomes_project 3 39527189 39644075 - MGP_C3HHeJ_P0060324 Sclt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060325.1 MGP_C3HHeJ_G0026902.1 mouse_genomes_project 3 39527189 39644528 - MGP_C3HHeJ_P0060325 Sclt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060326.1 MGP_C3HHeJ_G0026902.1 mouse_genomes_project 3 39527353 39530402 - Sclt1 protein_coding retained_intron MGP_C3HHeJ_T0060327.1 MGP_C3HHeJ_G0026902.1 mouse_genomes_project 3 39529678 39574698 - Sclt1 protein_coding retained_intron MGP_C3HHeJ_T0060328.1 MGP_C3HHeJ_G0026902.1 mouse_genomes_project 3 39558651 39565423 - MGP_C3HHeJ_P0060328 Sclt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060329.1 MGP_C3HHeJ_G0026902.1 mouse_genomes_project 3 39575206 39619954 - Sclt1 protein_coding retained_intron MGP_C3HHeJ_T0060330.1 MGP_C3HHeJ_G0026902.1 mouse_genomes_project 3 39643565 39644452 - Sclt1 protein_coding retained_intron MGP_C3HHeJ_T0061379.1 MGP_C3HHeJ_G0027128.1 mouse_genomes_project 3 88608367 88628725 - MGP_C3HHeJ_P0061379 Gm43738 protein_coding protein_coding MGP_C3HHeJ_T0061525.1 MGP_C3HHeJ_G0027152.1 mouse_genomes_project 3 88947043 88957839 - MGP_C3HHeJ_P0061525 Flad1 protein_coding protein_coding MGP_C3HHeJ_T0061526.1 MGP_C3HHeJ_G0027152.1 mouse_genomes_project 3 88948008 88957832 - MGP_C3HHeJ_P0061526 Flad1 protein_coding protein_coding MGP_C3HHeJ_T0061527.1 MGP_C3HHeJ_G0027152.1 mouse_genomes_project 3 88948706 88957838 - MGP_C3HHeJ_P0061527 Flad1 protein_coding protein_coding MGP_C3HHeJ_T0061528.1 MGP_C3HHeJ_G0027152.1 mouse_genomes_project 3 88954698 88957750 - MGP_C3HHeJ_P0061528 Flad1 protein_coding protein_coding MGP_C3HHeJ_T0061529.1 MGP_C3HHeJ_G0027152.1 mouse_genomes_project 3 88954923 88957839 - MGP_C3HHeJ_P0061529 Flad1 protein_coding protein_coding MGP_C3HHeJ_T0007544.1 MGP_C3HHeJ_G0006165.1 mouse_genomes_project 3 96622927 96636041 - lincRNA lincRNA MGP_C3HHeJ_T0014138.1 MGP_C3HHeJ_G0012242.1 mouse_genomes_project 3 128068062 128068270 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062628.1 MGP_C3HHeJ_G0027419.1 mouse_genomes_project 3 106310326 106534884 + MGP_C3HHeJ_P0062628 Kcnd3 protein_coding protein_coding MGP_C3HHeJ_T0062629.1 MGP_C3HHeJ_G0027419.1 mouse_genomes_project 3 106310583 106528470 + Kcnd3 protein_coding retained_intron MGP_C3HHeJ_T0062630.1 MGP_C3HHeJ_G0027419.1 mouse_genomes_project 3 106314644 106534889 + MGP_C3HHeJ_P0062630 Kcnd3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062631.1 MGP_C3HHeJ_G0027419.1 mouse_genomes_project 3 106529886 106530726 + Kcnd3 protein_coding processed_transcript MGP_C3HHeJ_T0007429.1 MGP_C3HHeJ_G0006084.1 mouse_genomes_project 3 36060280 36065205 - 5430434I15Rik lincRNA lincRNA MGP_C3HHeJ_T0007509.1 MGP_C3HHeJ_G0006143.1 mouse_genomes_project 3 82687701 82690083 + Gm38096 lincRNA lincRNA MGP_C3HHeJ_T0061813.1 MGP_C3HHeJ_G0027238.1 mouse_genomes_project 3 92816267 92817439 + MGP_C3HHeJ_P0061813 protein_coding protein_coding MGP_C3HHeJ_T0064076.1 MGP_C3HHeJ_G0027703.1 mouse_genomes_project 3 156984850 157014885 - MGP_C3HHeJ_P0064076 Lhx8 protein_coding protein_coding MGP_C3HHeJ_T0064077.1 MGP_C3HHeJ_G0027703.1 mouse_genomes_project 3 156984852 157014284 - MGP_C3HHeJ_P0064077 Lhx8 protein_coding protein_coding MGP_C3HHeJ_T0064078.1 MGP_C3HHeJ_G0027703.1 mouse_genomes_project 3 156985534 157012391 - MGP_C3HHeJ_P0064078 Lhx8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064079.1 MGP_C3HHeJ_G0027703.1 mouse_genomes_project 3 156999652 157009102 - Lhx8 protein_coding retained_intron MGP_C3HHeJ_T0064080.1 MGP_C3HHeJ_G0027703.1 mouse_genomes_project 3 157005164 157012859 - MGP_C3HHeJ_P0064080 Lhx8 protein_coding protein_coding MGP_C3HHeJ_T0001210.1 MGP_C3HHeJ_G0001142.1 mouse_genomes_project 3 74737359 74741349 + TEC TEC MGP_C3HHeJ_T0061208.1 MGP_C3HHeJ_G0027101.1 mouse_genomes_project 3 87774599 87786435 - MGP_C3HHeJ_P0061208 Rhbg protein_coding protein_coding MGP_C3HHeJ_T0063120.1 MGP_C3HHeJ_G0027530.1 mouse_genomes_project 3 122796957 122826945 + MGP_C3HHeJ_P0063120 Alg14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063121.1 MGP_C3HHeJ_G0027530.1 mouse_genomes_project 3 122797007 122870980 + MGP_C3HHeJ_P0063121 Alg14 protein_coding protein_coding MGP_C3HHeJ_T0063122.1 MGP_C3HHeJ_G0027530.1 mouse_genomes_project 3 122797049 122827407 + MGP_C3HHeJ_P0063122 Alg14 protein_coding protein_coding MGP_C3HHeJ_T0001263.1 MGP_C3HHeJ_G0001195.1 mouse_genomes_project 3 120298561 120300795 + TEC TEC MGP_C3HHeJ_T0013916.1 MGP_C3HHeJ_G0012020.1 mouse_genomes_project 3 58237217 58237618 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013846.1 MGP_C3HHeJ_G0011950.1 mouse_genomes_project 3 35450920 35451564 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062413.1 MGP_C3HHeJ_G0027378.1 mouse_genomes_project 3 102500916 102526449 - MGP_C3HHeJ_P0062413 Mab21l3 protein_coding protein_coding MGP_C3HHeJ_T0062414.1 MGP_C3HHeJ_G0027378.1 mouse_genomes_project 3 102501523 102540461 - MGP_C3HHeJ_P0062414 Mab21l3 protein_coding protein_coding MGP_C3HHeJ_T0013948.1 MGP_C3HHeJ_G0012052.1 mouse_genomes_project 3 68297319 68298679 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100580.1 MGP_C3HHeJ_G0038774.1 mouse_genomes_project 3 128654144 128654276 + Gm25501 snoRNA snoRNA MGP_C3HHeJ_T0061904.1 MGP_C3HHeJ_G0027265.1 mouse_genomes_project 3 95002638 95005507 - MGP_C3HHeJ_P0061904 Psmb4 protein_coding protein_coding MGP_C3HHeJ_T0061905.1 MGP_C3HHeJ_G0027265.1 mouse_genomes_project 3 95002867 95003389 - Psmb4 protein_coding retained_intron MGP_C3HHeJ_T0061906.1 MGP_C3HHeJ_G0027265.1 mouse_genomes_project 3 95003443 95005408 - Psmb4 protein_coding retained_intron MGP_C3HHeJ_T0061907.1 MGP_C3HHeJ_G0027265.1 mouse_genomes_project 3 95003462 95005291 - Psmb4 protein_coding retained_intron MGP_C3HHeJ_T0061908.1 MGP_C3HHeJ_G0027265.1 mouse_genomes_project 3 95003852 95004501 - Psmb4 protein_coding retained_intron MGP_C3HHeJ_T0007549.1 MGP_C3HHeJ_G0006170.1 mouse_genomes_project 3 98258814 98267663 - Gm15999 lincRNA lincRNA MGP_C3HHeJ_T0060015.1 MGP_C3HHeJ_G0026851.1 mouse_genomes_project 3 30095617 30130194 + MGP_C3HHeJ_P0060015 Pik3ca protein_coding protein_coding MGP_C3HHeJ_T0060016.1 MGP_C3HHeJ_G0026851.1 mouse_genomes_project 3 30125044 30126196 + Pik3ca protein_coding retained_intron MGP_C3HHeJ_T0063600.1 MGP_C3HHeJ_G0027615.1 mouse_genomes_project 3 139603127 139606901 + Ddit4l protein_coding processed_transcript MGP_C3HHeJ_T0063601.1 MGP_C3HHeJ_G0027615.1 mouse_genomes_project 3 139605178 139609855 + MGP_C3HHeJ_P0063601 Ddit4l protein_coding protein_coding MGP_C3HHeJ_T0063602.1 MGP_C3HHeJ_G0027615.1 mouse_genomes_project 3 139605543 139607676 + MGP_C3HHeJ_P0063602 Ddit4l protein_coding protein_coding MGP_C3HHeJ_T0098451.1 MGP_C3HHeJ_G0036656.1 mouse_genomes_project 3 105479126 105481979 + Gm43581 sense_intronic sense_intronic MGP_C3HHeJ_T0007546.1 MGP_C3HHeJ_G0006167.1 mouse_genomes_project 3 96659718 96660583 - 4930477E14Rik lincRNA lincRNA MGP_C3HHeJ_T0062632.1 MGP_C3HHeJ_G0027420.1 mouse_genomes_project 3 106539154 106548410 - MGP_C3HHeJ_P0062632 Ddx20 protein_coding protein_coding MGP_C3HHeJ_T0062633.1 MGP_C3HHeJ_G0027420.1 mouse_genomes_project 3 106540504 106548288 - MGP_C3HHeJ_P0062633 Ddx20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062634.1 MGP_C3HHeJ_G0027420.1 mouse_genomes_project 3 106542373 106548280 - Ddx20 protein_coding retained_intron MGP_C3HHeJ_T0013831.1 MGP_C3HHeJ_G0011935.1 mouse_genomes_project 3 33317573 33318009 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001283.1 MGP_C3HHeJ_G0001215.1 mouse_genomes_project 3 128057668 128062965 + TEC TEC MGP_C3HHeJ_T0062380.1 MGP_C3HHeJ_G0027368.1 mouse_genomes_project 3 101063395 101106340 - Fam46c protein_coding processed_transcript MGP_C3HHeJ_T0062381.1 MGP_C3HHeJ_G0027368.1 mouse_genomes_project 3 101063398 101106336 - Fam46c protein_coding processed_transcript MGP_C3HHeJ_T0062382.1 MGP_C3HHeJ_G0027368.1 mouse_genomes_project 3 101080776 101106466 - MGP_C3HHeJ_P0062382 Fam46c protein_coding protein_coding MGP_C3HHeJ_T0061784.1 MGP_C3HHeJ_G0027211.1 mouse_genomes_project 3 92288241 92289585 + MGP_C3HHeJ_P0061784 Sprr2k protein_coding protein_coding MGP_C3HHeJ_T0063693.1 MGP_C3HHeJ_G0027636.1 mouse_genomes_project 3 143276696 143279048 - MGP_C3HHeJ_P0063693 Pdha2 protein_coding protein_coding MGP_C3HHeJ_T0062343.1 MGP_C3HHeJ_G0027358.1 mouse_genomes_project 3 99219237 99233680 - MGP_C3HHeJ_P0062343 Hsd3b2 protein_coding protein_coding MGP_C3HHeJ_T0062344.1 MGP_C3HHeJ_G0027358.1 mouse_genomes_project 3 99220319 99233668 - MGP_C3HHeJ_P0062344 Hsd3b2 protein_coding protein_coding MGP_C3HHeJ_T0062345.1 MGP_C3HHeJ_G0027358.1 mouse_genomes_project 3 99220718 99225733 - MGP_C3HHeJ_P0062345 Hsd3b2 protein_coding protein_coding MGP_C3HHeJ_T0004203.1 MGP_C3HHeJ_G0003690.1 mouse_genomes_project 3 88715257 88716869 - Gm16069 antisense antisense MGP_C3HHeJ_T0059720.1 MGP_C3HHeJ_G0026784.1 mouse_genomes_project 3 11161323 11521978 + MGP_C3HHeJ_P0059720 Ralyl protein_coding unknown_likely_coding MGP_C3HHeJ_T0059721.1 MGP_C3HHeJ_G0026784.1 mouse_genomes_project 3 11341433 11590574 + MGP_C3HHeJ_P0059721 Ralyl protein_coding protein_coding MGP_C3HHeJ_T0059722.1 MGP_C3HHeJ_G0026784.1 mouse_genomes_project 3 11341444 11591430 + MGP_C3HHeJ_P0059722 Ralyl protein_coding protein_coding MGP_C3HHeJ_T0059723.1 MGP_C3HHeJ_G0026784.1 mouse_genomes_project 3 11341451 11591737 + MGP_C3HHeJ_P0059723 Ralyl protein_coding protein_coding MGP_C3HHeJ_T0007534.1 MGP_C3HHeJ_G0006156.1 mouse_genomes_project 3 92014236 92022088 + Gm43740 lincRNA lincRNA MGP_C3HHeJ_T0014098.1 MGP_C3HHeJ_G0012202.1 mouse_genomes_project 3 114207021 114209276 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014055.1 MGP_C3HHeJ_G0012159.1 mouse_genomes_project 3 101892524 101892960 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007515.1 MGP_C3HHeJ_G0006149.1 mouse_genomes_project 3 86594805 86599554 + Gm37855 lincRNA lincRNA MGP_C3HHeJ_T0004215.1 MGP_C3HHeJ_G0003699.1 mouse_genomes_project 3 94457675 94467771 - Gm43401 antisense antisense MGP_C3HHeJ_T0013790.1 MGP_C3HHeJ_G0011894.1 mouse_genomes_project 3 14937436 14937776 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061278.1 MGP_C3HHeJ_G0027113.1 mouse_genomes_project 3 88025474 88029934 - Lmna protein_coding retained_intron MGP_C3HHeJ_T0061279.1 MGP_C3HHeJ_G0027113.1 mouse_genomes_project 3 88026475 88048355 - MGP_C3HHeJ_P0061279 Lmna protein_coding protein_coding MGP_C3HHeJ_T0061280.1 MGP_C3HHeJ_G0027113.1 mouse_genomes_project 3 88027173 88048357 - Lmna protein_coding processed_transcript MGP_C3HHeJ_T0061281.1 MGP_C3HHeJ_G0027113.1 mouse_genomes_project 3 88027403 88028191 - Lmna protein_coding retained_intron MGP_C3HHeJ_T0061282.1 MGP_C3HHeJ_G0027113.1 mouse_genomes_project 3 88028531 88048327 - MGP_C3HHeJ_P0061282 Lmna protein_coding protein_coding MGP_C3HHeJ_T0061283.1 MGP_C3HHeJ_G0027113.1 mouse_genomes_project 3 88028532 88038430 - MGP_C3HHeJ_P0061283 Lmna protein_coding protein_coding MGP_C3HHeJ_T0061284.1 MGP_C3HHeJ_G0027113.1 mouse_genomes_project 3 88047772 88054907 - MGP_C3HHeJ_P0061284 Lmna protein_coding protein_coding MGP_C3HHeJ_T0063516.1 MGP_C3HHeJ_G0027602.1 mouse_genomes_project 3 137101591 137164751 + MGP_C3HHeJ_P0063516 protein_coding protein_coding MGP_C3HHeJ_T0063517.1 MGP_C3HHeJ_G0027602.1 mouse_genomes_project 3 137130981 137135417 + MGP_C3HHeJ_P0063517 protein_coding protein_coding MGP_C3HHeJ_T0063518.1 MGP_C3HHeJ_G0027602.1 mouse_genomes_project 3 137150381 137150821 + protein_coding retained_intron MGP_C3HHeJ_T0063519.1 MGP_C3HHeJ_G0027602.1 mouse_genomes_project 3 137151184 137157318 + protein_coding retained_intron MGP_C3HHeJ_T0063520.1 MGP_C3HHeJ_G0027602.1 mouse_genomes_project 3 137161766 137162298 + protein_coding retained_intron MGP_C3HHeJ_T0060510.1 MGP_C3HHeJ_G0026937.1 mouse_genomes_project 3 53482399 53517706 + MGP_C3HHeJ_P0060510 Ccdc169 protein_coding protein_coding MGP_C3HHeJ_T0060511.1 MGP_C3HHeJ_G0026937.1 mouse_genomes_project 3 53485089 53516328 + MGP_C3HHeJ_P0060511 Ccdc169 protein_coding protein_coding MGP_C3HHeJ_T0060512.1 MGP_C3HHeJ_G0026937.1 mouse_genomes_project 3 53485089 53515276 + MGP_C3HHeJ_P0060512 Ccdc169 protein_coding protein_coding MGP_C3HHeJ_T0060513.1 MGP_C3HHeJ_G0026937.1 mouse_genomes_project 3 53485106 53502136 + MGP_C3HHeJ_P0060513 Ccdc169 protein_coding protein_coding MGP_C3HHeJ_T0060514.1 MGP_C3HHeJ_G0026937.1 mouse_genomes_project 3 53487339 53516382 + MGP_C3HHeJ_P0060514 Ccdc169 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060515.1 MGP_C3HHeJ_G0026937.1 mouse_genomes_project 3 53487339 53516382 + MGP_C3HHeJ_P0060515 Ccdc169 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013968.1 MGP_C3HHeJ_G0012072.1 mouse_genomes_project 3 73910302 73910927 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013947.1 MGP_C3HHeJ_G0012051.1 mouse_genomes_project 3 68192756 68193015 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059963.1 MGP_C3HHeJ_G0026839.1 mouse_genomes_project 3 28258190 28278822 - MGP_C3HHeJ_P0059963 Lrrc31 protein_coding protein_coding MGP_C3HHeJ_T0059964.1 MGP_C3HHeJ_G0026839.1 mouse_genomes_project 3 28261931 28278835 - MGP_C3HHeJ_P0059964 Lrrc31 protein_coding protein_coding MGP_C3HHeJ_T0059965.1 MGP_C3HHeJ_G0026839.1 mouse_genomes_project 3 28276933 28278760 - Lrrc31 protein_coding retained_intron MGP_C3HHeJ_T0059966.1 MGP_C3HHeJ_G0026839.1 mouse_genomes_project 3 28277108 28278802 - Lrrc31 protein_coding processed_transcript MGP_C3HHeJ_T0007443.1 MGP_C3HHeJ_G0006093.1 mouse_genomes_project 3 39373935 39378403 - Platr4 lincRNA lincRNA MGP_C3HHeJ_T0007444.1 MGP_C3HHeJ_G0006093.1 mouse_genomes_project 3 39377605 39383117 - Platr4 lincRNA lincRNA MGP_C3HHeJ_T0007445.1 MGP_C3HHeJ_G0006093.1 mouse_genomes_project 3 39378730 39383119 - Platr4 lincRNA lincRNA MGP_C3HHeJ_T0062030.1 MGP_C3HHeJ_G0027285.1 mouse_genomes_project 3 95471848 95482525 - MGP_C3HHeJ_P0062030 Anxa9 protein_coding protein_coding MGP_C3HHeJ_T0062031.1 MGP_C3HHeJ_G0027285.1 mouse_genomes_project 3 95471848 95482897 - MGP_C3HHeJ_P0062031 Anxa9 protein_coding protein_coding MGP_C3HHeJ_T0062032.1 MGP_C3HHeJ_G0027285.1 mouse_genomes_project 3 95472050 95482525 - MGP_C3HHeJ_P0062032 Anxa9 protein_coding protein_coding MGP_C3HHeJ_T0062033.1 MGP_C3HHeJ_G0027285.1 mouse_genomes_project 3 95481653 95482525 - MGP_C3HHeJ_P0062033 Anxa9 protein_coding protein_coding MGP_C3HHeJ_T0062896.1 MGP_C3HHeJ_G0027487.1 mouse_genomes_project 3 109765748 109811677 + MGP_C3HHeJ_P0062896 Aknad1 protein_coding protein_coding MGP_C3HHeJ_T0062897.1 MGP_C3HHeJ_G0027487.1 mouse_genomes_project 3 109770176 109804330 + MGP_C3HHeJ_P0062897 Aknad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062898.1 MGP_C3HHeJ_G0027487.1 mouse_genomes_project 3 109779294 109790389 + Aknad1 protein_coding retained_intron MGP_C3HHeJ_T0062899.1 MGP_C3HHeJ_G0027487.1 mouse_genomes_project 3 109788506 109804035 + Aknad1 protein_coding retained_intron MGP_C3HHeJ_T0060886.1 MGP_C3HHeJ_G0027027.1 mouse_genomes_project 3 78253762 78338628 - MGP_C3HHeJ_P0060886 Rapgef2 protein_coding protein_coding MGP_C3HHeJ_T0060887.1 MGP_C3HHeJ_G0027027.1 mouse_genomes_project 3 78253774 78339528 - MGP_C3HHeJ_P0060887 Rapgef2 protein_coding protein_coding MGP_C3HHeJ_T0060888.1 MGP_C3HHeJ_G0027027.1 mouse_genomes_project 3 78253777 78485038 - MGP_C3HHeJ_P0060888 Rapgef2 protein_coding protein_coding MGP_C3HHeJ_T0060889.1 MGP_C3HHeJ_G0027027.1 mouse_genomes_project 3 78302038 78368766 - Rapgef2 protein_coding retained_intron MGP_C3HHeJ_T0060890.1 MGP_C3HHeJ_G0027027.1 mouse_genomes_project 3 78305128 78368868 - Rapgef2 protein_coding processed_transcript MGP_C3HHeJ_T0060891.1 MGP_C3HHeJ_G0027027.1 mouse_genomes_project 3 78364681 78378130 - Rapgef2 protein_coding retained_intron MGP_C3HHeJ_T0100562.1 MGP_C3HHeJ_G0038756.1 mouse_genomes_project 3 96429477 96429604 + Gm22027 snoRNA snoRNA MGP_C3HHeJ_T0062199.1 MGP_C3HHeJ_G0027320.1 mouse_genomes_project 3 96535024 96545227 - MGP_C3HHeJ_P0062199 Fcgr1 protein_coding protein_coding MGP_C3HHeJ_T0062200.1 MGP_C3HHeJ_G0027320.1 mouse_genomes_project 3 96536646 96544748 - MGP_C3HHeJ_P0062200 Fcgr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100587.1 MGP_C3HHeJ_G0038781.1 mouse_genomes_project 3 146777186 146777314 - Gm24406 snoRNA snoRNA MGP_C3HHeJ_T0060416.1 MGP_C3HHeJ_G0026918.1 mouse_genomes_project 3 51255064 51291309 - MGP_C3HHeJ_P0060416 Cog6 protein_coding protein_coding MGP_C3HHeJ_T0060417.1 MGP_C3HHeJ_G0026918.1 mouse_genomes_project 3 51255311 51268790 - Cog6 protein_coding retained_intron MGP_C3HHeJ_T0060418.1 MGP_C3HHeJ_G0026918.1 mouse_genomes_project 3 51257905 51291288 - MGP_C3HHeJ_P0060418 Cog6 protein_coding protein_coding MGP_C3HHeJ_T0060419.1 MGP_C3HHeJ_G0026918.1 mouse_genomes_project 3 51266919 51291290 - MGP_C3HHeJ_P0060419 Cog6 protein_coding protein_coding MGP_C3HHeJ_T0060420.1 MGP_C3HHeJ_G0026918.1 mouse_genomes_project 3 51269887 51291282 - Cog6 protein_coding retained_intron MGP_C3HHeJ_T0060421.1 MGP_C3HHeJ_G0026918.1 mouse_genomes_project 3 51284429 51291284 - Cog6 protein_coding retained_intron MGP_C3HHeJ_T0059767.1 MGP_C3HHeJ_G0026803.1 mouse_genomes_project 3 16438889 16471745 - MGP_C3HHeJ_P0059767 Armc1 protein_coding protein_coding MGP_C3HHeJ_T0014057.1 MGP_C3HHeJ_G0012161.1 mouse_genomes_project 3 101974951 101975381 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010480.1 MGP_C3HHeJ_G0008613.1 mouse_genomes_project 3 153554572 153554643 - Mir3963 miRNA miRNA MGP_C3HHeJ_T0099256.1 MGP_C3HHeJ_G0037450.1 mouse_genomes_project 3 57407039 57407211 - Gm25572 snRNA snRNA MGP_C3HHeJ_T0007572.1 MGP_C3HHeJ_G0006189.1 mouse_genomes_project 3 107762631 107811534 - Gm35507 lincRNA lincRNA MGP_C3HHeJ_T0101958.1 MGP_C3HHeJ_G0039923.1 mouse_genomes_project 3 89541849 89545027 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098123.1 MGP_C3HHeJ_G0036335.1 mouse_genomes_project 3 68564057 68564171 + Gm25621 rRNA rRNA MGP_C3HHeJ_T0001259.1 MGP_C3HHeJ_G0001191.1 mouse_genomes_project 3 118275660 118279632 - TEC TEC MGP_C3HHeJ_T0063941.1 MGP_C3HHeJ_G0027687.1 mouse_genomes_project 3 154682319 154698012 - Gipc2 protein_coding processed_transcript MGP_C3HHeJ_T0063942.1 MGP_C3HHeJ_G0027687.1 mouse_genomes_project 3 154682625 154760002 - MGP_C3HHeJ_P0063942 Gipc2 protein_coding protein_coding MGP_C3HHeJ_T0063943.1 MGP_C3HHeJ_G0027687.1 mouse_genomes_project 3 154682627 154696585 - Gipc2 protein_coding processed_transcript MGP_C3HHeJ_T0063944.1 MGP_C3HHeJ_G0027687.1 mouse_genomes_project 3 154682668 154696133 - Gipc2 protein_coding processed_transcript MGP_C3HHeJ_T0063945.1 MGP_C3HHeJ_G0027687.1 mouse_genomes_project 3 154682805 154692407 - Gipc2 protein_coding retained_intron MGP_C3HHeJ_T0063946.1 MGP_C3HHeJ_G0027687.1 mouse_genomes_project 3 154682980 154738831 - Gipc2 protein_coding processed_transcript MGP_C3HHeJ_T0063947.1 MGP_C3HHeJ_G0027687.1 mouse_genomes_project 3 154691426 154697826 - Gipc2 protein_coding retained_intron MGP_C3HHeJ_T0063948.1 MGP_C3HHeJ_G0027687.1 mouse_genomes_project 3 154718014 154729880 - Gipc2 protein_coding retained_intron MGP_C3HHeJ_T0063949.1 MGP_C3HHeJ_G0027687.1 mouse_genomes_project 3 154720540 154759522 - Gipc2 protein_coding processed_transcript MGP_C3HHeJ_T0011446.1 MGP_C3HHeJ_G0009579.1 mouse_genomes_project 3 78024314 78024657 + Gm24749 misc_RNA misc_RNA MGP_C3HHeJ_T0007689.1 MGP_C3HHeJ_G0006284.1 mouse_genomes_project 3 153831405 153833921 + 4930555A03Rik lincRNA lincRNA MGP_C3HHeJ_T0007690.1 MGP_C3HHeJ_G0006284.1 mouse_genomes_project 3 153831441 153833585 + 4930555A03Rik lincRNA lincRNA MGP_C3HHeJ_T0007691.1 MGP_C3HHeJ_G0006284.1 mouse_genomes_project 3 153831442 153832871 + 4930555A03Rik lincRNA lincRNA MGP_C3HHeJ_T0007692.1 MGP_C3HHeJ_G0006284.1 mouse_genomes_project 3 153832282 153833583 + 4930555A03Rik lincRNA lincRNA MGP_C3HHeJ_T0004315.1 MGP_C3HHeJ_G0003762.1 mouse_genomes_project 3 140204330 140233388 - 0610031O16Rik antisense antisense MGP_C3HHeJ_T0004316.1 MGP_C3HHeJ_G0003762.1 mouse_genomes_project 3 140211463 140233388 - 0610031O16Rik antisense antisense MGP_C3HHeJ_T0004317.1 MGP_C3HHeJ_G0003762.1 mouse_genomes_project 3 140220222 140233404 - 0610031O16Rik antisense antisense MGP_C3HHeJ_T0004318.1 MGP_C3HHeJ_G0003762.1 mouse_genomes_project 3 140222729 140234130 - 0610031O16Rik antisense antisense MGP_C3HHeJ_T0001351.1 MGP_C3HHeJ_G0001282.1 mouse_genomes_project 3 156105775 156106686 - TEC TEC MGP_C3HHeJ_T0014088.1 MGP_C3HHeJ_G0012192.1 mouse_genomes_project 3 111343197 111343534 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001364.1 MGP_C3HHeJ_G0001295.1 mouse_genomes_project 3 160830949 160833420 - TEC TEC MGP_C3HHeJ_T0063786.1 MGP_C3HHeJ_G0027656.1 mouse_genomes_project 3 147170389 147194251 - MGP_C3HHeJ_P0063786 Clca4b protein_coding protein_coding MGP_C3HHeJ_T0098439.1 MGP_C3HHeJ_G0036644.1 mouse_genomes_project 3 104914649 104917086 - Gm42700 sense_intronic sense_intronic MGP_C3HHeJ_T0001207.1 MGP_C3HHeJ_G0001139.1 mouse_genomes_project 3 72079591 72081456 - TEC TEC MGP_C3HHeJ_T0060331.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644609 39660979 + MGP_C3HHeJ_P0060331 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060332.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644657 39658370 + MGP_C3HHeJ_P0060332 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060333.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644660 39660969 + MGP_C3HHeJ_P0060333 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060334.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644663 39661428 + MGP_C3HHeJ_P0060334 D3Ertd751e protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060335.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644664 39660978 + MGP_C3HHeJ_P0060335 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060336.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644664 39660978 + MGP_C3HHeJ_P0060336 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060337.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644700 39660978 + MGP_C3HHeJ_P0060337 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060338.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644702 39645967 + D3Ertd751e protein_coding retained_intron MGP_C3HHeJ_T0060339.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644709 39659699 + MGP_C3HHeJ_P0060339 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060340.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644772 39655823 + MGP_C3HHeJ_P0060340 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060341.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39646716 39658194 + MGP_C3HHeJ_P0060341 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060342.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39648523 39658210 + MGP_C3HHeJ_P0060342 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060343.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39648753 39660996 + MGP_C3HHeJ_P0060343 D3Ertd751e protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060344.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39650621 39658545 + D3Ertd751e protein_coding retained_intron MGP_C3HHeJ_T0007652.1 MGP_C3HHeJ_G0006255.1 mouse_genomes_project 3 145373142 145388265 + A830019L24Rik lincRNA lincRNA MGP_C3HHeJ_T0007653.1 MGP_C3HHeJ_G0006255.1 mouse_genomes_project 3 145373617 145390153 + A830019L24Rik lincRNA lincRNA MGP_C3HHeJ_T0063653.1 MGP_C3HHeJ_G0027629.1 mouse_genomes_project 3 140412998 140423871 + Adh4 protein_coding processed_transcript MGP_C3HHeJ_T0063654.1 MGP_C3HHeJ_G0027629.1 mouse_genomes_project 3 140413019 140431727 + MGP_C3HHeJ_P0063654 Adh4 protein_coding protein_coding MGP_C3HHeJ_T0063655.1 MGP_C3HHeJ_G0027629.1 mouse_genomes_project 3 140413027 140439584 + MGP_C3HHeJ_P0063655 Adh4 protein_coding protein_coding MGP_C3HHeJ_T0007607.1 MGP_C3HHeJ_G0006215.1 mouse_genomes_project 3 126403395 126508096 + Gm42825 lincRNA lincRNA MGP_C3HHeJ_T0007563.1 MGP_C3HHeJ_G0006182.1 mouse_genomes_project 3 103313229 103315450 + Gm42678 lincRNA lincRNA MGP_C3HHeJ_T0001172.1 MGP_C3HHeJ_G0001104.1 mouse_genomes_project 3 50294652 50296451 - TEC TEC MGP_C3HHeJ_T0060633.1 MGP_C3HHeJ_G0026969.1 mouse_genomes_project 3 58562133 58567783 + MGP_C3HHeJ_P0060633 Sucnr1 protein_coding protein_coding MGP_C3HHeJ_T0060634.1 MGP_C3HHeJ_G0026969.1 mouse_genomes_project 3 58562166 58566542 + Sucnr1 protein_coding processed_transcript MGP_C3HHeJ_T0017787.1 MGP_C3HHeJ_G0015287.1 mouse_genomes_project 3 129824810 129936886 - D030025E07Rik processed_transcript lincRNA MGP_C3HHeJ_T0017788.1 MGP_C3HHeJ_G0015287.1 mouse_genomes_project 3 129831990 129841237 - D030025E07Rik processed_transcript lincRNA MGP_C3HHeJ_T0017789.1 MGP_C3HHeJ_G0015287.1 mouse_genomes_project 3 129832367 129936889 - D030025E07Rik processed_transcript retained_intron MGP_C3HHeJ_T0017790.1 MGP_C3HHeJ_G0015287.1 mouse_genomes_project 3 129849741 129936836 - D030025E07Rik processed_transcript retained_intron MGP_C3HHeJ_T0017791.1 MGP_C3HHeJ_G0015287.1 mouse_genomes_project 3 129899061 129936875 - D030025E07Rik processed_transcript lincRNA MGP_C3HHeJ_T0061814.1 MGP_C3HHeJ_G0027239.1 mouse_genomes_project 3 92842120 92843341 + MGP_C3HHeJ_P0061814 Lce3e protein_coding protein_coding MGP_C3HHeJ_T0014203.1 MGP_C3HHeJ_G0012307.1 mouse_genomes_project 3 149065765 149067074 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100529.1 MGP_C3HHeJ_G0038723.1 mouse_genomes_project 3 35659426 35659535 - Gm26404 snoRNA snoRNA MGP_C3HHeJ_T0001214.1 MGP_C3HHeJ_G0001146.1 mouse_genomes_project 3 76751784 76758171 - TEC TEC MGP_C3HHeJ_T0061653.1 MGP_C3HHeJ_G0027169.1 mouse_genomes_project 3 89692841 89808318 + MGP_C3HHeJ_P0061653 Nup210l protein_coding protein_coding MGP_C3HHeJ_T0061654.1 MGP_C3HHeJ_G0027169.1 mouse_genomes_project 3 89692843 89808349 + MGP_C3HHeJ_P0061654 Nup210l protein_coding protein_coding MGP_C3HHeJ_T0007423.1 MGP_C3HHeJ_G0006079.1 mouse_genomes_project 3 35031821 35037531 + Gm12532 lincRNA lincRNA MGP_C3HHeJ_T0063444.1 MGP_C3HHeJ_G0027586.1 mouse_genomes_project 3 133077371 133117443 - MGP_C3HHeJ_P0063444 Hadh protein_coding protein_coding MGP_C3HHeJ_T0063445.1 MGP_C3HHeJ_G0027586.1 mouse_genomes_project 3 133089044 133117366 - Hadh protein_coding retained_intron MGP_C3HHeJ_T0098446.1 MGP_C3HHeJ_G0036651.1 mouse_genomes_project 3 105000943 105003373 - Gm43260 sense_intronic sense_intronic MGP_C3HHeJ_T0061829.1 MGP_C3HHeJ_G0027247.1 mouse_genomes_project 3 93366059 93369286 + MGP_C3HHeJ_P0061829 Tchhl1 protein_coding protein_coding MGP_C3HHeJ_T0007610.1 MGP_C3HHeJ_G0006218.1 mouse_genomes_project 3 129601870 129643548 + 9830132P13Rik lincRNA lincRNA MGP_C3HHeJ_T0060364.1 MGP_C3HHeJ_G0026908.1 mouse_genomes_project 3 49407295 49431788 + MGP_C3HHeJ_P0060364 Noct protein_coding protein_coding MGP_C3HHeJ_T0060365.1 MGP_C3HHeJ_G0026908.1 mouse_genomes_project 3 49407318 49431775 + MGP_C3HHeJ_P0060365 Noct protein_coding protein_coding MGP_C3HHeJ_T0001089.1 MGP_C3HHeJ_G0001023.1 mouse_genomes_project 3 22551503 22551697 + TEC TEC MGP_C3HHeJ_T0101971.1 MGP_C3HHeJ_G0039936.1 mouse_genomes_project 3 107192694 107220915 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0062394.1 MGP_C3HHeJ_G0027372.1 mouse_genomes_project 3 101579113 101613881 - MGP_C3HHeJ_P0062394 Ttf2 protein_coding protein_coding MGP_C3HHeJ_T0062395.1 MGP_C3HHeJ_G0027372.1 mouse_genomes_project 3 101582101 101586525 - Ttf2 protein_coding retained_intron MGP_C3HHeJ_T0062396.1 MGP_C3HHeJ_G0027372.1 mouse_genomes_project 3 101586517 101613881 - Ttf2 protein_coding retained_intron MGP_C3HHeJ_T0062397.1 MGP_C3HHeJ_G0027372.1 mouse_genomes_project 3 101587630 101593262 - MGP_C3HHeJ_P0062397 Ttf2 protein_coding protein_coding MGP_C3HHeJ_T0062398.1 MGP_C3HHeJ_G0027372.1 mouse_genomes_project 3 101599413 101600649 - Ttf2 protein_coding retained_intron MGP_C3HHeJ_T0007696.1 MGP_C3HHeJ_G0006288.1 mouse_genomes_project 3 155787369 155807338 - Gm43832 lincRNA lincRNA MGP_C3HHeJ_T0007697.1 MGP_C3HHeJ_G0006288.1 mouse_genomes_project 3 155790885 155799943 - Gm43832 lincRNA lincRNA MGP_C3HHeJ_T0061037.1 MGP_C3HHeJ_G0027063.1 mouse_genomes_project 3 84024082 84064844 + MGP_C3HHeJ_P0061037 Tmem154 protein_coding protein_coding MGP_C3HHeJ_T0061038.1 MGP_C3HHeJ_G0027063.1 mouse_genomes_project 3 84024100 84044382 + Tmem154 protein_coding retained_intron MGP_C3HHeJ_T0061039.1 MGP_C3HHeJ_G0027063.1 mouse_genomes_project 3 84024260 84044272 + Tmem154 protein_coding processed_transcript MGP_C3HHeJ_T0061040.1 MGP_C3HHeJ_G0027063.1 mouse_genomes_project 3 84048931 84051189 + Tmem154 protein_coding retained_intron MGP_C3HHeJ_T0060204.1 MGP_C3HHeJ_G0026880.1 mouse_genomes_project 3 34907444 34955666 + MGP_C3HHeJ_P0060204 Adad1 protein_coding protein_coding MGP_C3HHeJ_T0060205.1 MGP_C3HHeJ_G0026880.1 mouse_genomes_project 3 34907548 34954665 + MGP_C3HHeJ_P0060205 Adad1 protein_coding protein_coding MGP_C3HHeJ_T0060206.1 MGP_C3HHeJ_G0026880.1 mouse_genomes_project 3 34907595 34911273 + Adad1 protein_coding retained_intron MGP_C3HHeJ_T0060207.1 MGP_C3HHeJ_G0026880.1 mouse_genomes_project 3 34929012 34936472 + Adad1 protein_coding retained_intron MGP_C3HHeJ_T0060208.1 MGP_C3HHeJ_G0026880.1 mouse_genomes_project 3 34929149 34967417 + MGP_C3HHeJ_P0060208 Adad1 protein_coding protein_coding MGP_C3HHeJ_T0061933.1 MGP_C3HHeJ_G0027268.1 mouse_genomes_project 3 95153255 95158473 - Zfp687 protein_coding retained_intron MGP_C3HHeJ_T0061934.1 MGP_C3HHeJ_G0027268.1 mouse_genomes_project 3 95153367 95161905 - MGP_C3HHeJ_P0061934 Zfp687 protein_coding protein_coding MGP_C3HHeJ_T0061935.1 MGP_C3HHeJ_G0027268.1 mouse_genomes_project 3 95153497 95161890 - Zfp687 protein_coding retained_intron MGP_C3HHeJ_T0061936.1 MGP_C3HHeJ_G0027268.1 mouse_genomes_project 3 95153497 95162071 - Zfp687 protein_coding retained_intron MGP_C3HHeJ_T0061937.1 MGP_C3HHeJ_G0027268.1 mouse_genomes_project 3 95153502 95162104 - MGP_C3HHeJ_P0061937 Zfp687 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061938.1 MGP_C3HHeJ_G0027268.1 mouse_genomes_project 3 95158505 95162115 - MGP_C3HHeJ_P0061938 Zfp687 protein_coding protein_coding MGP_C3HHeJ_T0061939.1 MGP_C3HHeJ_G0027268.1 mouse_genomes_project 3 95158634 95161891 - MGP_C3HHeJ_P0061939 Zfp687 protein_coding protein_coding MGP_C3HHeJ_T0061940.1 MGP_C3HHeJ_G0027268.1 mouse_genomes_project 3 95158839 95161885 - MGP_C3HHeJ_P0061940 Zfp687 protein_coding protein_coding MGP_C3HHeJ_T0060895.1 MGP_C3HHeJ_G0027029.1 mouse_genomes_project 3 78660218 78777898 - MGP_C3HHeJ_P0060895 Fnip2 protein_coding protein_coding MGP_C3HHeJ_T0060896.1 MGP_C3HHeJ_G0027029.1 mouse_genomes_project 3 78661108 78670425 - Fnip2 protein_coding retained_intron MGP_C3HHeJ_T0060897.1 MGP_C3HHeJ_G0027029.1 mouse_genomes_project 3 78663515 78777784 - MGP_C3HHeJ_P0060897 Fnip2 protein_coding protein_coding MGP_C3HHeJ_T0060898.1 MGP_C3HHeJ_G0027029.1 mouse_genomes_project 3 78663814 78705768 - Fnip2 protein_coding retained_intron MGP_C3HHeJ_T0060899.1 MGP_C3HHeJ_G0027029.1 mouse_genomes_project 3 78709471 78723327 - Fnip2 protein_coding processed_transcript MGP_C3HHeJ_T0060900.1 MGP_C3HHeJ_G0027029.1 mouse_genomes_project 3 78712844 78777781 - Fnip2 protein_coding retained_intron MGP_C3HHeJ_T0004336.1 MGP_C3HHeJ_G0003777.1 mouse_genomes_project 3 159657577 159674102 - Gm15577 antisense antisense MGP_C3HHeJ_T0007648.1 MGP_C3HHeJ_G0006251.1 mouse_genomes_project 3 143022388 143023761 + 4930590L14Rik lincRNA lincRNA MGP_C3HHeJ_T0062095.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95966273 95977251 - Tars2 protein_coding retained_intron MGP_C3HHeJ_T0062096.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95966273 95982204 - MGP_C3HHeJ_P0062096 Tars2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062097.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95966273 95982188 - MGP_C3HHeJ_P0062097 Tars2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062098.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95966273 95982215 - MGP_C3HHeJ_P0062098 Tars2 protein_coding protein_coding MGP_C3HHeJ_T0062099.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95966273 95982224 - MGP_C3HHeJ_P0062099 Tars2 protein_coding protein_coding MGP_C3HHeJ_T0062100.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95966273 95982224 - MGP_C3HHeJ_P0062100 Tars2 protein_coding protein_coding MGP_C3HHeJ_T0062101.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95966316 95968444 - Tars2 protein_coding processed_transcript MGP_C3HHeJ_T0062102.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95970150 95982236 - MGP_C3HHeJ_P0062102 Tars2 protein_coding protein_coding MGP_C3HHeJ_T0062103.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95972082 95974831 - Tars2 protein_coding processed_transcript MGP_C3HHeJ_T0062104.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95973813 95982224 - MGP_C3HHeJ_P0062104 Tars2 protein_coding protein_coding MGP_C3HHeJ_T0062105.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95973847 95982191 - MGP_C3HHeJ_P0062105 Tars2 protein_coding protein_coding MGP_C3HHeJ_T0062106.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95974850 95982224 - MGP_C3HHeJ_P0062106 Tars2 protein_coding protein_coding MGP_C3HHeJ_T0062107.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95974873 95981708 - Tars2 protein_coding processed_transcript MGP_C3HHeJ_T0062108.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95974875 95982202 - MGP_C3HHeJ_P0062108 Tars2 protein_coding protein_coding MGP_C3HHeJ_T0062109.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95976511 95977251 - Tars2 protein_coding retained_intron MGP_C3HHeJ_T0062110.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95976637 95982170 - Tars2 protein_coding processed_transcript MGP_C3HHeJ_T0062111.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95976972 95981825 - Tars2 protein_coding retained_intron MGP_C3HHeJ_T0062112.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95977036 95982202 - MGP_C3HHeJ_P0062112 Tars2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062113.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95982158 95987600 - MGP_C3HHeJ_P0062113 Tars2 protein_coding protein_coding MGP_C3HHeJ_T0007508.1 MGP_C3HHeJ_G0006142.1 mouse_genomes_project 3 82418583 82422553 - Gm10710 lincRNA lincRNA MGP_C3HHeJ_T0014131.1 MGP_C3HHeJ_G0012235.1 mouse_genomes_project 3 125104971 125105717 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098426.1 MGP_C3HHeJ_G0036631.1 mouse_genomes_project 3 102274292 102275610 - Gm42941 sense_intronic sense_intronic MGP_C3HHeJ_T0061496.1 MGP_C3HHeJ_G0027146.1 mouse_genomes_project 3 88875513 88880818 - MGP_C3HHeJ_P0061496 Efna4 protein_coding protein_coding MGP_C3HHeJ_T0061479.1 MGP_C3HHeJ_G0027142.1 mouse_genomes_project 3 88798248 88806882 + MGP_C3HHeJ_P0061479 Dpm3 protein_coding protein_coding MGP_C3HHeJ_T0061480.1 MGP_C3HHeJ_G0027142.1 mouse_genomes_project 3 88806356 88806882 + MGP_C3HHeJ_P0061480 Dpm3 protein_coding protein_coding MGP_C3HHeJ_T0061481.1 MGP_C3HHeJ_G0027142.1 mouse_genomes_project 3 88806443 88806884 + Dpm3 protein_coding retained_intron MGP_C3HHeJ_T0014194.1 MGP_C3HHeJ_G0012298.1 mouse_genomes_project 3 144771138 144772200 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098467.1 MGP_C3HHeJ_G0036672.1 mouse_genomes_project 3 155922778 155924922 - 1700012D16Rik sense_intronic sense_intronic MGP_C3HHeJ_T0059916.1 MGP_C3HHeJ_G0026830.1 mouse_genomes_project 3 26302081 26304113 - MGP_C3HHeJ_P0059916 Yae1d1 protein_coding protein_coding MGP_C3HHeJ_T0061798.1 MGP_C3HHeJ_G0027223.1 mouse_genomes_project 3 92533236 92534939 - MGP_C3HHeJ_P0061798 Lce1a2 protein_coding protein_coding MGP_C3HHeJ_T0001098.1 MGP_C3HHeJ_G0001032.1 mouse_genomes_project 3 28066673 28067541 + TEC TEC MGP_C3HHeJ_T0001295.1 MGP_C3HHeJ_G0001227.1 mouse_genomes_project 3 128697381 128701120 - TEC TEC MGP_C3HHeJ_T0001076.1 MGP_C3HHeJ_G0001010.1 mouse_genomes_project 3 5968077 5971043 - TEC TEC MGP_C3HHeJ_T0004182.1 MGP_C3HHeJ_G0003675.1 mouse_genomes_project 3 63935239 64114240 - antisense antisense MGP_C3HHeJ_T0004183.1 MGP_C3HHeJ_G0003675.1 mouse_genomes_project 3 64105855 64114212 - antisense antisense MGP_C3HHeJ_T0007626.1 MGP_C3HHeJ_G0006232.1 mouse_genomes_project 3 135106457 135108948 - Gm43254 lincRNA lincRNA MGP_C3HHeJ_T0062512.1 MGP_C3HHeJ_G0027395.1 mouse_genomes_project 3 104357797 104416258 + MGP_C3HHeJ_P0062512 Syt6 protein_coding protein_coding MGP_C3HHeJ_T0062513.1 MGP_C3HHeJ_G0027395.1 mouse_genomes_project 3 104357847 104420505 + MGP_C3HHeJ_P0062513 Syt6 protein_coding protein_coding MGP_C3HHeJ_T0062514.1 MGP_C3HHeJ_G0027395.1 mouse_genomes_project 3 104357848 104420505 + MGP_C3HHeJ_P0062514 Syt6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062515.1 MGP_C3HHeJ_G0027395.1 mouse_genomes_project 3 104357866 104418095 + MGP_C3HHeJ_P0062515 Syt6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062516.1 MGP_C3HHeJ_G0027395.1 mouse_genomes_project 3 104357944 104416239 + MGP_C3HHeJ_P0062516 Syt6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062517.1 MGP_C3HHeJ_G0027395.1 mouse_genomes_project 3 104359800 104370962 + MGP_C3HHeJ_P0062517 Syt6 protein_coding protein_coding MGP_C3HHeJ_T0062518.1 MGP_C3HHeJ_G0027395.1 mouse_genomes_project 3 104359845 104420504 + MGP_C3HHeJ_P0062518 Syt6 protein_coding protein_coding MGP_C3HHeJ_T0062519.1 MGP_C3HHeJ_G0027395.1 mouse_genomes_project 3 104359861 104412897 + MGP_C3HHeJ_P0062519 Syt6 protein_coding protein_coding MGP_C3HHeJ_T0062520.1 MGP_C3HHeJ_G0027395.1 mouse_genomes_project 3 104359861 104438827 + MGP_C3HHeJ_P0062520 Syt6 protein_coding protein_coding MGP_C3HHeJ_T0014053.1 MGP_C3HHeJ_G0012157.1 mouse_genomes_project 3 101596099 101596598 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059641.1 MGP_C3HHeJ_G0026758.1 mouse_genomes_project 3 2361785 2573409 + MGP_C3HHeJ_P0059641 Zfhx4 protein_coding protein_coding MGP_C3HHeJ_T0059642.1 MGP_C3HHeJ_G0026758.1 mouse_genomes_project 3 2361805 2490813 + Zfhx4 protein_coding retained_intron MGP_C3HHeJ_T0059643.1 MGP_C3HHeJ_G0026758.1 mouse_genomes_project 3 2361813 2576098 + MGP_C3HHeJ_P0059643 Zfhx4 protein_coding protein_coding MGP_C3HHeJ_T0059644.1 MGP_C3HHeJ_G0026758.1 mouse_genomes_project 3 2368061 2391107 + MGP_C3HHeJ_P0059644 Zfhx4 protein_coding protein_coding MGP_C3HHeJ_T0059645.1 MGP_C3HHeJ_G0026758.1 mouse_genomes_project 3 2390760 2576100 + MGP_C3HHeJ_P0059645 Zfhx4 protein_coding protein_coding MGP_C3HHeJ_T0062144.1 MGP_C3HHeJ_G0027303.1 mouse_genomes_project 3 96131501 96136504 + MGP_C3HHeJ_P0062144 Aph1a protein_coding protein_coding MGP_C3HHeJ_T0062145.1 MGP_C3HHeJ_G0027303.1 mouse_genomes_project 3 96131565 96132524 + MGP_C3HHeJ_P0062145 Aph1a protein_coding protein_coding MGP_C3HHeJ_T0062146.1 MGP_C3HHeJ_G0027303.1 mouse_genomes_project 3 96131587 96135661 + MGP_C3HHeJ_P0062146 Aph1a protein_coding protein_coding MGP_C3HHeJ_T0062147.1 MGP_C3HHeJ_G0027303.1 mouse_genomes_project 3 96131703 96136814 + MGP_C3HHeJ_P0062147 Aph1a protein_coding unknown_likely_coding MGP_C3HHeJ_T0062148.1 MGP_C3HHeJ_G0027303.1 mouse_genomes_project 3 96131997 96136048 + Aph1a protein_coding retained_intron MGP_C3HHeJ_T0061717.1 MGP_C3HHeJ_G0027181.1 mouse_genomes_project 3 90102306 90104708 - Snapin protein_coding retained_intron MGP_C3HHeJ_T0061718.1 MGP_C3HHeJ_G0027181.1 mouse_genomes_project 3 90102314 90105313 - MGP_C3HHeJ_P0061718 Snapin protein_coding protein_coding MGP_C3HHeJ_T0061719.1 MGP_C3HHeJ_G0027181.1 mouse_genomes_project 3 90102650 90105273 - MGP_C3HHeJ_P0061719 Snapin protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061720.1 MGP_C3HHeJ_G0027181.1 mouse_genomes_project 3 90102653 90105304 - MGP_C3HHeJ_P0061720 Snapin protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061721.1 MGP_C3HHeJ_G0027181.1 mouse_genomes_project 3 90103279 90105072 - Snapin protein_coding retained_intron MGP_C3HHeJ_T0060985.1 MGP_C3HHeJ_G0027051.1 mouse_genomes_project 3 82340889 82357478 + MGP_C3HHeJ_P0060985 Plrg1 protein_coding protein_coding MGP_C3HHeJ_T0060986.1 MGP_C3HHeJ_G0027051.1 mouse_genomes_project 3 82340899 82357412 + MGP_C3HHeJ_P0060986 Plrg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060987.1 MGP_C3HHeJ_G0027051.1 mouse_genomes_project 3 82340922 82357295 + MGP_C3HHeJ_P0060987 Plrg1 protein_coding protein_coding MGP_C3HHeJ_T0060988.1 MGP_C3HHeJ_G0027051.1 mouse_genomes_project 3 82353169 82354191 + Plrg1 protein_coding retained_intron MGP_C3HHeJ_T0060989.1 MGP_C3HHeJ_G0027051.1 mouse_genomes_project 3 82354098 82355288 + Plrg1 protein_coding retained_intron MGP_C3HHeJ_T0001101.1 MGP_C3HHeJ_G0001035.1 mouse_genomes_project 3 28541877 28542187 - TEC TEC MGP_C3HHeJ_T0062186.1 MGP_C3HHeJ_G0027311.1 mouse_genomes_project 3 96435123 96450412 + MGP_C3HHeJ_P0062186 Sv2a protein_coding protein_coding MGP_C3HHeJ_T0062187.1 MGP_C3HHeJ_G0027311.1 mouse_genomes_project 3 96440636 96442398 + Sv2a protein_coding retained_intron MGP_C3HHeJ_T0062188.1 MGP_C3HHeJ_G0027311.1 mouse_genomes_project 3 96447437 96450409 + Sv2a protein_coding processed_transcript MGP_C3HHeJ_T0061306.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88161895 88169811 + Arhgef2 protein_coding processed_transcript MGP_C3HHeJ_T0061307.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88162100 88172572 + Arhgef2 protein_coding processed_transcript MGP_C3HHeJ_T0061308.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88162232 88202113 + MGP_C3HHeJ_P0061308 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061309.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88169654 88172734 + Arhgef2 protein_coding processed_transcript MGP_C3HHeJ_T0061310.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88169842 88188826 + MGP_C3HHeJ_P0061310 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061311.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88170600 88189730 + MGP_C3HHeJ_P0061311 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061312.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88171375 88202716 + MGP_C3HHeJ_P0061312 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061313.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88171375 88203238 + MGP_C3HHeJ_P0061313 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061314.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88171749 88202079 + MGP_C3HHeJ_P0061314 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061315.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88176337 88202047 + MGP_C3HHeJ_P0061315 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061316.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88176350 88194737 + Arhgef2 protein_coding retained_intron MGP_C3HHeJ_T0061317.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88176471 88202047 + MGP_C3HHeJ_P0061317 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061318.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88176504 88203236 + MGP_C3HHeJ_P0061318 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061319.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88176672 88189693 + Arhgef2 protein_coding retained_intron MGP_C3HHeJ_T0061320.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88176760 88188291 + Arhgef2 protein_coding retained_intron MGP_C3HHeJ_T0061321.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88177671 88188157 + MGP_C3HHeJ_P0061321 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061322.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88178132 88195909 + MGP_C3HHeJ_P0061322 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061323.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88178569 88188848 + MGP_C3HHeJ_P0061323 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061324.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88184671 88188207 + MGP_C3HHeJ_P0061324 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061325.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88184698 88187332 + Arhgef2 protein_coding retained_intron MGP_C3HHeJ_T0061326.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88184702 88188223 + MGP_C3HHeJ_P0061326 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061327.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88184800 88187565 + MGP_C3HHeJ_P0061327 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061328.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88187141 88189893 + Arhgef2 protein_coding processed_transcript MGP_C3HHeJ_T0061329.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88187426 88188821 + Arhgef2 protein_coding retained_intron MGP_C3HHeJ_T0061330.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88187963 88188869 + Arhgef2 protein_coding retained_intron MGP_C3HHeJ_T0061331.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88188148 88193046 + Arhgef2 protein_coding retained_intron MGP_C3HHeJ_T0061332.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88189553 88190307 + Arhgef2 protein_coding retained_intron MGP_C3HHeJ_T0061333.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88197597 88199084 + Arhgef2 protein_coding retained_intron MGP_C3HHeJ_T0061334.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88199103 88202149 + Arhgef2 protein_coding processed_transcript MGP_C3HHeJ_T0013922.1 MGP_C3HHeJ_G0012026.1 mouse_genomes_project 3 59834622 59834914 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099252.1 MGP_C3HHeJ_G0037446.1 mouse_genomes_project 3 53901085 53901192 + Gm25404 snRNA snRNA MGP_C3HHeJ_T0060575.1 MGP_C3HHeJ_G0026950.1 mouse_genomes_project 3 56829820 56882978 + MGP_C3HHeJ_P0060575 Tsc22d2 protein_coding protein_coding MGP_C3HHeJ_T0060576.1 MGP_C3HHeJ_G0026950.1 mouse_genomes_project 3 56829825 56877915 + MGP_C3HHeJ_P0060576 Tsc22d2 protein_coding protein_coding MGP_C3HHeJ_T0060577.1 MGP_C3HHeJ_G0026950.1 mouse_genomes_project 3 56830983 56834005 + Tsc22d2 protein_coding retained_intron MGP_C3HHeJ_T0060578.1 MGP_C3HHeJ_G0026950.1 mouse_genomes_project 3 56832589 56876505 + MGP_C3HHeJ_P0060578 Tsc22d2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063171.1 MGP_C3HHeJ_G0027539.1 mouse_genomes_project 3 123827251 123838136 + MGP_C3HHeJ_P0063171 Dnttip2 protein_coding protein_coding MGP_C3HHeJ_T0063172.1 MGP_C3HHeJ_G0027539.1 mouse_genomes_project 3 123827281 123829074 + Dnttip2 protein_coding processed_transcript MGP_C3HHeJ_T0063173.1 MGP_C3HHeJ_G0027539.1 mouse_genomes_project 3 123828880 123838114 + Dnttip2 protein_coding processed_transcript MGP_C3HHeJ_T0063174.1 MGP_C3HHeJ_G0027539.1 mouse_genomes_project 3 123829636 123832477 + Dnttip2 protein_coding retained_intron MGP_C3HHeJ_T0063175.1 MGP_C3HHeJ_G0027539.1 mouse_genomes_project 3 123833440 123837963 + Dnttip2 protein_coding retained_intron MGP_C3HHeJ_T0101970.1 MGP_C3HHeJ_G0039935.1 mouse_genomes_project 3 107084482 107085826 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007619.1 MGP_C3HHeJ_G0006225.1 mouse_genomes_project 3 132657501 132662918 - lincRNA lincRNA MGP_C3HHeJ_T0062662.1 MGP_C3HHeJ_G0027428.1 mouse_genomes_project 3 106850830 106864573 + MGP_C3HHeJ_P0062662 Ovgp1 protein_coding protein_coding MGP_C3HHeJ_T0062663.1 MGP_C3HHeJ_G0027428.1 mouse_genomes_project 3 106851202 106863202 + MGP_C3HHeJ_P0062663 Ovgp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062664.1 MGP_C3HHeJ_G0027428.1 mouse_genomes_project 3 106854405 106857281 + Ovgp1 protein_coding retained_intron MGP_C3HHeJ_T0062665.1 MGP_C3HHeJ_G0027428.1 mouse_genomes_project 3 106857256 106861900 + Ovgp1 protein_coding processed_transcript MGP_C3HHeJ_T0001074.1 MGP_C3HHeJ_G0001009.1 mouse_genomes_project 3 2356147 2358528 + TEC TEC MGP_C3HHeJ_T0001075.1 MGP_C3HHeJ_G0001009.1 mouse_genomes_project 3 2358074 2358407 + TEC TEC MGP_C3HHeJ_T0060254.1 MGP_C3HHeJ_G0026891.1 mouse_genomes_project 3 36772284 36902854 + MGP_C3HHeJ_P0060254 Fat4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0060255.1 MGP_C3HHeJ_G0026891.1 mouse_genomes_project 3 36776730 36843507 + Fat4 protein_coding retained_intron MGP_C3HHeJ_T0004160.1 MGP_C3HHeJ_G0003657.1 mouse_genomes_project 3 36900613 36901693 - Gm43539 antisense antisense MGP_C3HHeJ_T0064021.1 MGP_C3HHeJ_G0027694.1 mouse_genomes_project 3 155056696 155270769 - MGP_C3HHeJ_P0064021 Ak5 protein_coding protein_coding MGP_C3HHeJ_T0064022.1 MGP_C3HHeJ_G0027694.1 mouse_genomes_project 3 155057744 155121316 - MGP_C3HHeJ_P0064022 Ak5 protein_coding protein_coding MGP_C3HHeJ_T0064023.1 MGP_C3HHeJ_G0027694.1 mouse_genomes_project 3 155068117 155073891 - Ak5 protein_coding retained_intron MGP_C3HHeJ_T0098125.1 MGP_C3HHeJ_G0036337.1 mouse_genomes_project 3 96776460 96776577 + Gm28001 rRNA rRNA MGP_C3HHeJ_T0007401.1 MGP_C3HHeJ_G0006059.1 mouse_genomes_project 3 26345579 26348104 - Gm32950 lincRNA lincRNA MGP_C3HHeJ_T0014111.1 MGP_C3HHeJ_G0012215.1 mouse_genomes_project 3 118335966 118336696 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060181.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34696069 34724303 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060182.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34696071 34896958 + MGP_C3HHeJ_P0060182 4932438A13Rik protein_coding protein_coding MGP_C3HHeJ_T0060183.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34696086 34723006 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060184.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34696086 34780858 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060185.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34696096 34896945 + MGP_C3HHeJ_P0060185 4932438A13Rik protein_coding unknown_likely_coding MGP_C3HHeJ_T0060186.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34696121 34785739 + MGP_C3HHeJ_P0060186 4932438A13Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060187.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34697434 34767697 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060188.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34703013 34896958 + MGP_C3HHeJ_P0060188 4932438A13Rik protein_coding protein_coding MGP_C3HHeJ_T0060189.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34703026 34723013 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060190.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34724780 34730145 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060191.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34730054 34785741 + MGP_C3HHeJ_P0060191 4932438A13Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060192.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34736917 34755547 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060193.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34783807 34785736 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060194.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34847866 34896940 + MGP_C3HHeJ_P0060194 4932438A13Rik protein_coding protein_coding MGP_C3HHeJ_T0060195.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34852263 34896941 + MGP_C3HHeJ_P0060195 4932438A13Rik protein_coding protein_coding MGP_C3HHeJ_T0060196.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34852394 34896939 + MGP_C3HHeJ_P0060196 4932438A13Rik protein_coding protein_coding MGP_C3HHeJ_T0060197.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34855192 34870801 + MGP_C3HHeJ_P0060197 4932438A13Rik protein_coding protein_coding MGP_C3HHeJ_T0060198.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34859517 34864630 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060199.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34860954 34864860 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060200.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34865202 34878687 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060201.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34878669 34881778 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060202.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34879366 34881780 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060203.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34884806 34887550 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0013908.1 MGP_C3HHeJ_G0012012.1 mouse_genomes_project 3 56359305 56360484 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064169.1 MGP_C3HHeJ_G0027717.1 mouse_genomes_project 3 160880534 161150809 - MGP_C3HHeJ_P0064169 Lrrc7 protein_coding protein_coding MGP_C3HHeJ_T0064170.1 MGP_C3HHeJ_G0027717.1 mouse_genomes_project 3 160880538 161376302 - MGP_C3HHeJ_P0064170 Lrrc7 protein_coding protein_coding MGP_C3HHeJ_T0064171.1 MGP_C3HHeJ_G0027717.1 mouse_genomes_project 3 160882120 161150702 - MGP_C3HHeJ_P0064171 Lrrc7 protein_coding protein_coding MGP_C3HHeJ_T0064172.1 MGP_C3HHeJ_G0027717.1 mouse_genomes_project 3 160882120 161376302 - MGP_C3HHeJ_P0064172 Lrrc7 protein_coding protein_coding MGP_C3HHeJ_T0064173.1 MGP_C3HHeJ_G0027717.1 mouse_genomes_project 3 161218707 161375426 - Lrrc7 protein_coding retained_intron MGP_C3HHeJ_T0064174.1 MGP_C3HHeJ_G0027717.1 mouse_genomes_project 3 161255141 161375417 - Lrrc7 protein_coding retained_intron MGP_C3HHeJ_T0061976.1 MGP_C3HHeJ_G0027275.1 mouse_genomes_project 3 95298361 95302964 + MGP_C3HHeJ_P0061976 protein_coding protein_coding MGP_C3HHeJ_T0001292.1 MGP_C3HHeJ_G0001224.1 mouse_genomes_project 3 128622634 128624271 - TEC TEC MGP_C3HHeJ_T0101955.1 MGP_C3HHeJ_G0039920.1 mouse_genomes_project 3 87033066 87033591 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004228.1 MGP_C3HHeJ_G0003706.1 mouse_genomes_project 3 96419385 96424336 - Gm17690 antisense antisense MGP_C3HHeJ_T0004229.1 MGP_C3HHeJ_G0003706.1 mouse_genomes_project 3 96423296 96424338 - Gm17690 antisense antisense MGP_C3HHeJ_T0007597.1 MGP_C3HHeJ_G0006209.1 mouse_genomes_project 3 123154398 123162945 - A730020M07Rik lincRNA lincRNA MGP_C3HHeJ_T0007598.1 MGP_C3HHeJ_G0006209.1 mouse_genomes_project 3 123156588 123162948 - A730020M07Rik lincRNA lincRNA MGP_C3HHeJ_T0007599.1 MGP_C3HHeJ_G0006209.1 mouse_genomes_project 3 123156590 123162830 - A730020M07Rik lincRNA lincRNA MGP_C3HHeJ_T0099321.1 MGP_C3HHeJ_G0037515.1 mouse_genomes_project 3 160152109 160152216 + Gm22458 snRNA snRNA MGP_C3HHeJ_T0061755.1 MGP_C3HHeJ_G0027191.1 mouse_genomes_project 3 90232870 90236110 + MGP_C3HHeJ_P0061755 S100a5 protein_coding protein_coding MGP_C3HHeJ_T0061756.1 MGP_C3HHeJ_G0027191.1 mouse_genomes_project 3 90234139 90236110 + MGP_C3HHeJ_P0061756 S100a5 protein_coding protein_coding MGP_C3HHeJ_T0098117.1 MGP_C3HHeJ_G0036329.1 mouse_genomes_project 3 1463581 1463700 + n-R5s194 rRNA rRNA MGP_C3HHeJ_T0101980.1 MGP_C3HHeJ_G0039945.1 mouse_genomes_project 3 144763834 144775735 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013950.1 MGP_C3HHeJ_G0012054.1 mouse_genomes_project 3 68536382 68536779 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063345.1 MGP_C3HHeJ_G0027567.1 mouse_genomes_project 3 129554321 129582200 - MGP_C3HHeJ_P0063345 5730508B09Rik protein_coding protein_coding MGP_C3HHeJ_T0063346.1 MGP_C3HHeJ_G0027567.1 mouse_genomes_project 3 129554943 129582164 - MGP_C3HHeJ_P0063346 5730508B09Rik protein_coding protein_coding MGP_C3HHeJ_T0060770.1 MGP_C3HHeJ_G0026998.1 mouse_genomes_project 3 66287180 66293109 - MGP_C3HHeJ_P0060770 Lxn protein_coding protein_coding MGP_C3HHeJ_T0060771.1 MGP_C3HHeJ_G0026998.1 mouse_genomes_project 3 66287183 66290817 - Lxn protein_coding retained_intron MGP_C3HHeJ_T0060772.1 MGP_C3HHeJ_G0026998.1 mouse_genomes_project 3 66290243 66292965 - Lxn protein_coding retained_intron MGP_C3HHeJ_T0001133.1 MGP_C3HHeJ_G0001067.1 mouse_genomes_project 3 40070445 40074220 + TEC TEC MGP_C3HHeJ_T0062415.1 MGP_C3HHeJ_G0027379.1 mouse_genomes_project 3 102547251 102611330 - MGP_C3HHeJ_P0062415 Slc22a15 protein_coding protein_coding MGP_C3HHeJ_T0062416.1 MGP_C3HHeJ_G0027379.1 mouse_genomes_project 3 102551372 102611386 - MGP_C3HHeJ_P0062416 Slc22a15 protein_coding protein_coding MGP_C3HHeJ_T0062417.1 MGP_C3HHeJ_G0027379.1 mouse_genomes_project 3 102551396 102582922 - Slc22a15 protein_coding processed_transcript MGP_C3HHeJ_T0062418.1 MGP_C3HHeJ_G0027379.1 mouse_genomes_project 3 102554940 102570333 - Slc22a15 protein_coding retained_intron MGP_C3HHeJ_T0062419.1 MGP_C3HHeJ_G0027379.1 mouse_genomes_project 3 102556178 102611316 - MGP_C3HHeJ_P0062419 Slc22a15 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062420.1 MGP_C3HHeJ_G0027379.1 mouse_genomes_project 3 102564086 102569060 - Slc22a15 protein_coding retained_intron MGP_C3HHeJ_T0062421.1 MGP_C3HHeJ_G0027379.1 mouse_genomes_project 3 102607941 102611390 - Slc22a15 protein_coding processed_transcript MGP_C3HHeJ_T0010458.1 MGP_C3HHeJ_G0008591.1 mouse_genomes_project 3 110099636 110099750 + Gm44384 miRNA miRNA MGP_C3HHeJ_T0014186.1 MGP_C3HHeJ_G0012290.1 mouse_genomes_project 3 142224741 142226381 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062365.1 MGP_C3HHeJ_G0027365.1 mouse_genomes_project 3 100466793 100548273 + Spag17 protein_coding processed_transcript MGP_C3HHeJ_T0062366.1 MGP_C3HHeJ_G0027365.1 mouse_genomes_project 3 100466804 100737534 + MGP_C3HHeJ_P0062366 Spag17 protein_coding protein_coding MGP_C3HHeJ_T0062367.1 MGP_C3HHeJ_G0027365.1 mouse_genomes_project 3 100611547 100616587 + Spag17 protein_coding retained_intron MGP_C3HHeJ_T0062368.1 MGP_C3HHeJ_G0027365.1 mouse_genomes_project 3 100616530 100627865 + Spag17 protein_coding retained_intron MGP_C3HHeJ_T0013781.1 MGP_C3HHeJ_G0011885.1 mouse_genomes_project 3 11937157 11938168 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013800.1 MGP_C3HHeJ_G0011904.1 mouse_genomes_project 3 17238721 17239281 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099281.1 MGP_C3HHeJ_G0037475.1 mouse_genomes_project 3 90184245 90184392 - Gm23464 snRNA snRNA MGP_C3HHeJ_T0099260.1 MGP_C3HHeJ_G0037454.1 mouse_genomes_project 3 64339504 64339597 + Gm22279 snRNA snRNA MGP_C3HHeJ_T0098126.1 MGP_C3HHeJ_G0036338.1 mouse_genomes_project 3 129412825 129412911 + Gm23279 rRNA rRNA MGP_C3HHeJ_T0063146.1 MGP_C3HHeJ_G0027536.1 mouse_genomes_project 3 123486427 123507803 + MGP_C3HHeJ_P0063146 Arhgap29 protein_coding protein_coding MGP_C3HHeJ_T0063147.1 MGP_C3HHeJ_G0027536.1 mouse_genomes_project 3 123487115 123552058 + MGP_C3HHeJ_P0063147 Arhgap29 protein_coding protein_coding MGP_C3HHeJ_T0063148.1 MGP_C3HHeJ_G0027536.1 mouse_genomes_project 3 123487116 123523550 + MGP_C3HHeJ_P0063148 Arhgap29 protein_coding protein_coding MGP_C3HHeJ_T0063149.1 MGP_C3HHeJ_G0027536.1 mouse_genomes_project 3 123501702 123527421 + MGP_C3HHeJ_P0063149 Arhgap29 protein_coding protein_coding MGP_C3HHeJ_T0063150.1 MGP_C3HHeJ_G0027536.1 mouse_genomes_project 3 123501702 123545219 + MGP_C3HHeJ_P0063150 Arhgap29 protein_coding protein_coding MGP_C3HHeJ_T0063151.1 MGP_C3HHeJ_G0027536.1 mouse_genomes_project 3 123501809 123550280 + MGP_C3HHeJ_P0063151 Arhgap29 protein_coding protein_coding MGP_C3HHeJ_T0063152.1 MGP_C3HHeJ_G0027536.1 mouse_genomes_project 3 123516183 123527516 + Arhgap29 protein_coding retained_intron MGP_C3HHeJ_T0063153.1 MGP_C3HHeJ_G0027536.1 mouse_genomes_project 3 123523502 123527190 + Arhgap29 protein_coding retained_intron MGP_C3HHeJ_T0063154.1 MGP_C3HHeJ_G0027536.1 mouse_genomes_project 3 123537612 123541103 + Arhgap29 protein_coding retained_intron MGP_C3HHeJ_T0061909.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100172 95105569 + MGP_C3HHeJ_P0061909 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061910.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100205 95102602 + MGP_C3HHeJ_P0061910 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061911.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100205 95107634 + MGP_C3HHeJ_P0061911 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061912.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100206 95102386 + MGP_C3HHeJ_P0061912 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061913.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100232 95107422 + MGP_C3HHeJ_P0061913 Rfx5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061914.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100257 95101776 + Rfx5 protein_coding processed_transcript MGP_C3HHeJ_T0061915.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100257 95103221 + MGP_C3HHeJ_P0061915 Rfx5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061916.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100267 95107422 + MGP_C3HHeJ_P0061916 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061917.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100292 95102464 + MGP_C3HHeJ_P0061917 Rfx5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061918.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100298 95107419 + Rfx5 protein_coding retained_intron MGP_C3HHeJ_T0061919.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100323 95107422 + MGP_C3HHeJ_P0061919 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061920.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100481 95102868 + MGP_C3HHeJ_P0061920 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061921.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100575 95102400 + MGP_C3HHeJ_P0061921 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061922.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100624 95102431 + MGP_C3HHeJ_P0061922 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061923.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100835 95105679 + MGP_C3HHeJ_P0061923 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061924.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95101087 95107634 + MGP_C3HHeJ_P0061924 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061925.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95101543 95102875 + Rfx5 protein_coding retained_intron MGP_C3HHeJ_T0001368.1 MGP_C3HHeJ_G0001299.1 mouse_genomes_project 3 161299303 161300328 + TEC TEC MGP_C3HHeJ_T0013886.1 MGP_C3HHeJ_G0011990.1 mouse_genomes_project 3 49594365 49594684 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001344.1 MGP_C3HHeJ_G0001275.1 mouse_genomes_project 3 154846770 154849539 - TEC TEC MGP_C3HHeJ_T0061006.1 MGP_C3HHeJ_G0027056.1 mouse_genomes_project 3 83430633 83498185 - MGP_C3HHeJ_P0061006 Mnd1 protein_coding protein_coding MGP_C3HHeJ_T0001362.1 MGP_C3HHeJ_G0001293.1 mouse_genomes_project 3 160692261 160694492 - TEC TEC MGP_C3HHeJ_T0060412.1 MGP_C3HHeJ_G0026916.1 mouse_genomes_project 3 49897839 50016271 - MGP_C3HHeJ_P0060412 Maml3 protein_coding protein_coding MGP_C3HHeJ_T0060413.1 MGP_C3HHeJ_G0026916.1 mouse_genomes_project 3 49897839 50328122 - MGP_C3HHeJ_P0060413 Maml3 protein_coding protein_coding MGP_C3HHeJ_T0060414.1 MGP_C3HHeJ_G0026916.1 mouse_genomes_project 3 50014113 50016309 - Maml3 protein_coding retained_intron MGP_C3HHeJ_T0013755.1 MGP_C3HHeJ_G0011859.1 mouse_genomes_project 3 5830928 5832158 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001329.1 MGP_C3HHeJ_G0001260.1 mouse_genomes_project 3 137796801 137800646 + TEC TEC MGP_C3HHeJ_T0014202.1 MGP_C3HHeJ_G0012306.1 mouse_genomes_project 3 148925143 148925535 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001304.1 MGP_C3HHeJ_G0001236.1 mouse_genomes_project 3 129542445 129543117 - TEC TEC MGP_C3HHeJ_T0062442.1 MGP_C3HHeJ_G0027384.1 mouse_genomes_project 3 103457932 103492616 + MGP_C3HHeJ_P0062442 Tspan2 protein_coding protein_coding MGP_C3HHeJ_T0062443.1 MGP_C3HHeJ_G0027384.1 mouse_genomes_project 3 103458174 103492879 + MGP_C3HHeJ_P0062443 Tspan2 protein_coding protein_coding MGP_C3HHeJ_T0062444.1 MGP_C3HHeJ_G0027384.1 mouse_genomes_project 3 103482920 103527311 + MGP_C3HHeJ_P0062444 Tspan2 protein_coding protein_coding MGP_C3HHeJ_T0060925.1 MGP_C3HHeJ_G0027035.1 mouse_genomes_project 3 79095723 79159754 + MGP_C3HHeJ_P0060925 Fam198b protein_coding protein_coding MGP_C3HHeJ_T0060926.1 MGP_C3HHeJ_G0027035.1 mouse_genomes_project 3 79095787 79150215 + MGP_C3HHeJ_P0060926 Fam198b protein_coding protein_coding MGP_C3HHeJ_T0060927.1 MGP_C3HHeJ_G0027035.1 mouse_genomes_project 3 79096121 79097423 + MGP_C3HHeJ_P0060927 Fam198b protein_coding protein_coding MGP_C3HHeJ_T0060928.1 MGP_C3HHeJ_G0027035.1 mouse_genomes_project 3 79097109 79159752 + MGP_C3HHeJ_P0060928 Fam198b protein_coding protein_coding MGP_C3HHeJ_T0060929.1 MGP_C3HHeJ_G0027035.1 mouse_genomes_project 3 79097235 79100825 + Fam198b protein_coding retained_intron MGP_C3HHeJ_T0007483.1 MGP_C3HHeJ_G0006122.1 mouse_genomes_project 3 67617678 67618856 + Gm35584 lincRNA lincRNA MGP_C3HHeJ_T0100543.1 MGP_C3HHeJ_G0038737.1 mouse_genomes_project 3 66402434 66402566 - Gm25919 snoRNA snoRNA MGP_C3HHeJ_T0060846.1 MGP_C3HHeJ_G0027018.1 mouse_genomes_project 3 72085503 72097342 - MGP_C3HHeJ_P0060846 Slitrk3 protein_coding protein_coding MGP_C3HHeJ_T0060847.1 MGP_C3HHeJ_G0027018.1 mouse_genomes_project 3 72086363 72098241 - MGP_C3HHeJ_P0060847 Slitrk3 protein_coding protein_coding MGP_C3HHeJ_T0007504.1 MGP_C3HHeJ_G0006139.1 mouse_genomes_project 3 82014018 82019229 + Gm30043 lincRNA lincRNA MGP_C3HHeJ_T0063479.1 MGP_C3HHeJ_G0027595.1 mouse_genomes_project 3 134789413 134892532 - MGP_C3HHeJ_P0063479 Gstcd protein_coding protein_coding MGP_C3HHeJ_T0063480.1 MGP_C3HHeJ_G0027595.1 mouse_genomes_project 3 134791355 134892740 - MGP_C3HHeJ_P0063480 Gstcd protein_coding protein_coding MGP_C3HHeJ_T0063481.1 MGP_C3HHeJ_G0027595.1 mouse_genomes_project 3 134800291 134809844 - Gstcd protein_coding retained_intron MGP_C3HHeJ_T0063482.1 MGP_C3HHeJ_G0027595.1 mouse_genomes_project 3 134802997 134892454 - Gstcd protein_coding processed_transcript MGP_C3HHeJ_T0063483.1 MGP_C3HHeJ_G0027595.1 mouse_genomes_project 3 134881344 134892485 - Gstcd protein_coding retained_intron MGP_C3HHeJ_T0063484.1 MGP_C3HHeJ_G0027595.1 mouse_genomes_project 3 134881540 134883244 - Gstcd protein_coding retained_intron MGP_C3HHeJ_T0061090.1 MGP_C3HHeJ_G0027076.1 mouse_genomes_project 3 86698244 86711065 - MGP_C3HHeJ_P0061090 protein_coding unknown_likely_coding MGP_C3HHeJ_T0061091.1 MGP_C3HHeJ_G0027076.1 mouse_genomes_project 3 86706295 86711094 - MGP_C3HHeJ_P0061091 protein_coding protein_coding MGP_C3HHeJ_T0013890.1 MGP_C3HHeJ_G0011994.1 mouse_genomes_project 3 50661766 50662007 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061052.1 MGP_C3HHeJ_G0027066.1 mouse_genomes_project 3 85055756 85069671 - Fam160a1 protein_coding retained_intron MGP_C3HHeJ_T0061053.1 MGP_C3HHeJ_G0027066.1 mouse_genomes_project 3 85055758 85225199 - MGP_C3HHeJ_P0061053 Fam160a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061054.1 MGP_C3HHeJ_G0027066.1 mouse_genomes_project 3 85055758 85142258 - MGP_C3HHeJ_P0061054 Fam160a1 protein_coding protein_coding MGP_C3HHeJ_T0061055.1 MGP_C3HHeJ_G0027066.1 mouse_genomes_project 3 85055760 85137473 - MGP_C3HHeJ_P0061055 Fam160a1 protein_coding protein_coding MGP_C3HHeJ_T0060597.1 MGP_C3HHeJ_G0026957.1 mouse_genomes_project 3 57436571 57545485 + MGP_C3HHeJ_P0060597 Med12l protein_coding protein_coding MGP_C3HHeJ_T0060598.1 MGP_C3HHeJ_G0026957.1 mouse_genomes_project 3 57437233 57762066 + MGP_C3HHeJ_P0060598 Med12l protein_coding protein_coding MGP_C3HHeJ_T0060599.1 MGP_C3HHeJ_G0026957.1 mouse_genomes_project 3 57437724 57761794 + MGP_C3HHeJ_P0060599 Med12l protein_coding protein_coding MGP_C3HHeJ_T0060600.1 MGP_C3HHeJ_G0026957.1 mouse_genomes_project 3 57437724 57761794 + MGP_C3HHeJ_P0060600 Med12l protein_coding protein_coding MGP_C3HHeJ_T0060601.1 MGP_C3HHeJ_G0026957.1 mouse_genomes_project 3 57437724 57544385 + MGP_C3HHeJ_P0060601 Med12l protein_coding protein_coding MGP_C3HHeJ_T0060621.1 MGP_C3HHeJ_G0026957.1 mouse_genomes_project 3 57707932 57759285 + MGP_C3HHeJ_P0060621 Med12l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061699.1 MGP_C3HHeJ_G0027178.1 mouse_genomes_project 3 90000085 90043453 - MGP_C3HHeJ_P0061699 Ints3 protein_coding protein_coding MGP_C3HHeJ_T0061700.1 MGP_C3HHeJ_G0027178.1 mouse_genomes_project 3 90000093 90043679 - MGP_C3HHeJ_P0061700 Ints3 protein_coding protein_coding MGP_C3HHeJ_T0061701.1 MGP_C3HHeJ_G0027178.1 mouse_genomes_project 3 90000773 90011912 - Ints3 protein_coding retained_intron MGP_C3HHeJ_T0061702.1 MGP_C3HHeJ_G0027178.1 mouse_genomes_project 3 90000773 90043763 - MGP_C3HHeJ_P0061702 Ints3 protein_coding protein_coding MGP_C3HHeJ_T0061703.1 MGP_C3HHeJ_G0027178.1 mouse_genomes_project 3 90003064 90009473 - Ints3 protein_coding retained_intron MGP_C3HHeJ_T0061704.1 MGP_C3HHeJ_G0027178.1 mouse_genomes_project 3 90009802 90011372 - Ints3 protein_coding retained_intron MGP_C3HHeJ_T0061705.1 MGP_C3HHeJ_G0027178.1 mouse_genomes_project 3 90016590 90043772 - Ints3 protein_coding retained_intron MGP_C3HHeJ_T0100590.1 MGP_C3HHeJ_G0038784.1 mouse_genomes_project 3 156484304 156484427 + Gm25757 snoRNA snoRNA MGP_C3HHeJ_T0013915.1 MGP_C3HHeJ_G0012019.1 mouse_genomes_project 3 58197854 58197996 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004307.1 MGP_C3HHeJ_G0003757.1 mouse_genomes_project 3 137332448 137334905 - 4930539J05Rik antisense antisense MGP_C3HHeJ_T0004308.1 MGP_C3HHeJ_G0003757.1 mouse_genomes_project 3 137332465 137333999 - 4930539J05Rik antisense antisense MGP_C3HHeJ_T0063793.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387446 147391240 + Odf2l protein_coding retained_intron MGP_C3HHeJ_T0063794.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387447 147426633 + MGP_C3HHeJ_P0063794 Odf2l protein_coding protein_coding MGP_C3HHeJ_T0063795.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387447 147426653 + MGP_C3HHeJ_P0063795 Odf2l protein_coding protein_coding MGP_C3HHeJ_T0063796.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387458 147406233 + Odf2l protein_coding retained_intron MGP_C3HHeJ_T0063797.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387458 147426623 + MGP_C3HHeJ_P0063797 Odf2l protein_coding protein_coding MGP_C3HHeJ_T0063798.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387466 147406144 + Odf2l protein_coding retained_intron MGP_C3HHeJ_T0063799.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387478 147426627 + MGP_C3HHeJ_P0063799 Odf2l protein_coding protein_coding MGP_C3HHeJ_T0063800.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387479 147397863 + MGP_C3HHeJ_P0063800 Odf2l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063801.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387832 147388488 + Odf2l protein_coding processed_transcript MGP_C3HHeJ_T0063802.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387832 147395000 + MGP_C3HHeJ_P0063802 Odf2l protein_coding protein_coding MGP_C3HHeJ_T0063803.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147389504 147397855 + MGP_C3HHeJ_P0063803 Odf2l protein_coding protein_coding MGP_C3HHeJ_T0063804.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147396715 147413194 + MGP_C3HHeJ_P0063804 Odf2l protein_coding protein_coding MGP_C3HHeJ_T0063805.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147401472 147420221 + Odf2l protein_coding retained_intron MGP_C3HHeJ_T0063806.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147408397 147420221 + Odf2l protein_coding retained_intron MGP_C3HHeJ_T0063807.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147408606 147416681 + Odf2l protein_coding processed_transcript MGP_C3HHeJ_T0063808.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147408615 147426631 + Odf2l protein_coding retained_intron MGP_C3HHeJ_T0063809.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147408637 147420173 + MGP_C3HHeJ_P0063809 Odf2l protein_coding protein_coding MGP_C3HHeJ_T0063810.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147420161 147425543 + MGP_C3HHeJ_P0063810 Odf2l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099320.1 MGP_C3HHeJ_G0037514.1 mouse_genomes_project 3 160011867 160011974 - Gm23725 snRNA snRNA MGP_C3HHeJ_T0099253.1 MGP_C3HHeJ_G0037447.1 mouse_genomes_project 3 56318535 56318635 - Gm24531 snRNA snRNA MGP_C3HHeJ_T0100578.1 MGP_C3HHeJ_G0038772.1 mouse_genomes_project 3 125102520 125102650 - Snora24 snoRNA snoRNA MGP_C3HHeJ_T0063850.1 MGP_C3HHeJ_G0027670.1 mouse_genomes_project 3 148563335 148631194 + MGP_C3HHeJ_P0063850 Lpar3 protein_coding protein_coding MGP_C3HHeJ_T0099277.1 MGP_C3HHeJ_G0037471.1 mouse_genomes_project 3 88735912 88736019 - Gm23269 snRNA snRNA MGP_C3HHeJ_T0061734.1 MGP_C3HHeJ_G0027185.1 mouse_genomes_project 3 90145638 90147013 + MGP_C3HHeJ_P0061734 S100a14 protein_coding protein_coding MGP_C3HHeJ_T0061735.1 MGP_C3HHeJ_G0027185.1 mouse_genomes_project 3 90145649 90147620 + MGP_C3HHeJ_P0061735 S100a14 protein_coding protein_coding MGP_C3HHeJ_T0061736.1 MGP_C3HHeJ_G0027185.1 mouse_genomes_project 3 90145652 90147620 + MGP_C3HHeJ_P0061736 S100a14 protein_coding protein_coding MGP_C3HHeJ_T0061737.1 MGP_C3HHeJ_G0027185.1 mouse_genomes_project 3 90145654 90147609 + S100a14 protein_coding retained_intron MGP_C3HHeJ_T0062720.1 MGP_C3HHeJ_G0027443.1 mouse_genomes_project 3 108127851 108140490 + MGP_C3HHeJ_P0062720 Kcna10 protein_coding protein_coding MGP_C3HHeJ_T0062721.1 MGP_C3HHeJ_G0027443.1 mouse_genomes_project 3 108127939 108132121 + Kcna10 protein_coding processed_transcript MGP_C3HHeJ_T0004165.1 MGP_C3HHeJ_G0003662.1 mouse_genomes_project 3 50498943 50499944 - Gm20402 antisense antisense MGP_C3HHeJ_T0099289.1 MGP_C3HHeJ_G0037483.1 mouse_genomes_project 3 96738802 96739004 + Rnu1b6 snRNA snRNA MGP_C3HHeJ_T0014018.1 MGP_C3HHeJ_G0012122.1 mouse_genomes_project 3 93008070 93008203 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062080.1 MGP_C3HHeJ_G0027295.1 mouse_genomes_project 3 95899791 95913077 - MGP_C3HHeJ_P0062080 Adamtsl4 protein_coding protein_coding MGP_C3HHeJ_T0062081.1 MGP_C3HHeJ_G0027295.1 mouse_genomes_project 3 95899794 95913018 - MGP_C3HHeJ_P0062081 Adamtsl4 protein_coding protein_coding MGP_C3HHeJ_T0062082.1 MGP_C3HHeJ_G0027295.1 mouse_genomes_project 3 95900340 95900742 - Adamtsl4 protein_coding processed_transcript MGP_C3HHeJ_T0062083.1 MGP_C3HHeJ_G0027295.1 mouse_genomes_project 3 95902615 95903687 - Adamtsl4 protein_coding processed_transcript MGP_C3HHeJ_T0062084.1 MGP_C3HHeJ_G0027295.1 mouse_genomes_project 3 95908694 95913025 - MGP_C3HHeJ_P0062084 Adamtsl4 protein_coding protein_coding MGP_C3HHeJ_T0098119.1 MGP_C3HHeJ_G0036331.1 mouse_genomes_project 3 22970246 22970381 + Gm24250 rRNA rRNA MGP_C3HHeJ_T0061237.1 MGP_C3HHeJ_G0027107.1 mouse_genomes_project 3 87873993 87899871 + MGP_C3HHeJ_P0061237 protein_coding protein_coding MGP_C3HHeJ_T0061238.1 MGP_C3HHeJ_G0027107.1 mouse_genomes_project 3 87874044 87890262 + protein_coding retained_intron MGP_C3HHeJ_T0061239.1 MGP_C3HHeJ_G0027107.1 mouse_genomes_project 3 87874098 87880815 + protein_coding retained_intron MGP_C3HHeJ_T0061240.1 MGP_C3HHeJ_G0027107.1 mouse_genomes_project 3 87878218 87885137 + protein_coding processed_transcript MGP_C3HHeJ_T0061241.1 MGP_C3HHeJ_G0027107.1 mouse_genomes_project 3 87879939 87888275 + MGP_C3HHeJ_P0061241 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061242.1 MGP_C3HHeJ_G0027107.1 mouse_genomes_project 3 87890034 87892170 + protein_coding retained_intron MGP_C3HHeJ_T0061243.1 MGP_C3HHeJ_G0027107.1 mouse_genomes_project 3 87895726 87897170 + protein_coding retained_intron MGP_C3HHeJ_T0061244.1 MGP_C3HHeJ_G0027107.1 mouse_genomes_project 3 87895879 87898803 + protein_coding processed_transcript MGP_C3HHeJ_T0061245.1 MGP_C3HHeJ_G0027107.1 mouse_genomes_project 3 87898068 87898624 + protein_coding retained_intron MGP_C3HHeJ_T0060752.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65808234 66184542 + MGP_C3HHeJ_P0060752 Rsrc1 protein_coding protein_coding MGP_C3HHeJ_T0060753.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65812520 65823347 + MGP_C3HHeJ_P0060753 Rsrc1 protein_coding protein_coding MGP_C3HHeJ_T0060754.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65812522 66186378 + MGP_C3HHeJ_P0060754 Rsrc1 protein_coding protein_coding MGP_C3HHeJ_T0060755.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65812535 65917012 + Rsrc1 protein_coding retained_intron MGP_C3HHeJ_T0060756.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65812535 66181705 + MGP_C3HHeJ_P0060756 Rsrc1 protein_coding protein_coding MGP_C3HHeJ_T0060757.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65812553 66186373 + MGP_C3HHeJ_P0060757 Rsrc1 protein_coding protein_coding MGP_C3HHeJ_T0060758.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65812554 66184541 + MGP_C3HHeJ_P0060758 Rsrc1 protein_coding protein_coding MGP_C3HHeJ_T0060759.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65812817 66186379 + MGP_C3HHeJ_P0060759 Rsrc1 protein_coding protein_coding MGP_C3HHeJ_T0060760.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65812828 65821585 + MGP_C3HHeJ_P0060760 Rsrc1 protein_coding protein_coding MGP_C3HHeJ_T0060761.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65817845 65821766 + Rsrc1 protein_coding retained_intron MGP_C3HHeJ_T0013917.1 MGP_C3HHeJ_G0012021.1 mouse_genomes_project 3 58492914 58493429 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059768.1 MGP_C3HHeJ_G0026804.1 mouse_genomes_project 3 16497210 16525161 + MGP_C3HHeJ_P0059768 Mtfr1 protein_coding protein_coding MGP_C3HHeJ_T0059769.1 MGP_C3HHeJ_G0026804.1 mouse_genomes_project 3 16497212 16529182 + MGP_C3HHeJ_P0059769 Mtfr1 protein_coding protein_coding MGP_C3HHeJ_T0059770.1 MGP_C3HHeJ_G0026804.1 mouse_genomes_project 3 16497230 16528833 + MGP_C3HHeJ_P0059770 Mtfr1 protein_coding protein_coding MGP_C3HHeJ_T0059771.1 MGP_C3HHeJ_G0026804.1 mouse_genomes_project 3 16497993 16530280 + MGP_C3HHeJ_P0059771 Mtfr1 protein_coding protein_coding MGP_C3HHeJ_T0059772.1 MGP_C3HHeJ_G0026804.1 mouse_genomes_project 3 16498148 16529019 + MGP_C3HHeJ_P0059772 Mtfr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059773.1 MGP_C3HHeJ_G0026804.1 mouse_genomes_project 3 16498157 16525170 + MGP_C3HHeJ_P0059773 Mtfr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059774.1 MGP_C3HHeJ_G0026804.1 mouse_genomes_project 3 16498197 16521026 + MGP_C3HHeJ_P0059774 Mtfr1 protein_coding protein_coding MGP_C3HHeJ_T0059775.1 MGP_C3HHeJ_G0026804.1 mouse_genomes_project 3 16509913 16530267 + MGP_C3HHeJ_P0059775 Mtfr1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0059776.1 MGP_C3HHeJ_G0026804.1 mouse_genomes_project 3 16521046 16525688 + Mtfr1 protein_coding retained_intron MGP_C3HHeJ_T0059657.1 MGP_C3HHeJ_G0026763.1 mouse_genomes_project 3 4701312 4751387 + MGP_C3HHeJ_P0059657 Zc2hc1a protein_coding protein_coding MGP_C3HHeJ_T0059658.1 MGP_C3HHeJ_G0026763.1 mouse_genomes_project 3 4701315 4749629 + MGP_C3HHeJ_P0059658 Zc2hc1a protein_coding protein_coding MGP_C3HHeJ_T0059659.1 MGP_C3HHeJ_G0026763.1 mouse_genomes_project 3 4735642 4749054 + Zc2hc1a protein_coding retained_intron MGP_C3HHeJ_T0014005.1 MGP_C3HHeJ_G0012109.1 mouse_genomes_project 3 88645090 88645343 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063123.1 MGP_C3HHeJ_G0027531.1 mouse_genomes_project 3 122938055 122970538 + MGP_C3HHeJ_P0063123 Cnn3 protein_coding protein_coding MGP_C3HHeJ_T0063124.1 MGP_C3HHeJ_G0027531.1 mouse_genomes_project 3 122938103 122970530 + Cnn3 protein_coding retained_intron MGP_C3HHeJ_T0063125.1 MGP_C3HHeJ_G0027531.1 mouse_genomes_project 3 122938340 122970143 + MGP_C3HHeJ_P0063125 Cnn3 protein_coding protein_coding MGP_C3HHeJ_T0063126.1 MGP_C3HHeJ_G0027531.1 mouse_genomes_project 3 122938852 122962023 + Cnn3 protein_coding processed_transcript MGP_C3HHeJ_T0063127.1 MGP_C3HHeJ_G0027531.1 mouse_genomes_project 3 122961430 122969478 + MGP_C3HHeJ_P0063127 Cnn3 protein_coding protein_coding MGP_C3HHeJ_T0063128.1 MGP_C3HHeJ_G0027531.1 mouse_genomes_project 3 122962639 122969689 + Cnn3 protein_coding retained_intron MGP_C3HHeJ_T0063129.1 MGP_C3HHeJ_G0027531.1 mouse_genomes_project 3 122969418 122970279 + MGP_C3HHeJ_P0063129 Cnn3 protein_coding protein_coding MGP_C3HHeJ_T0063130.1 MGP_C3HHeJ_G0027531.1 mouse_genomes_project 3 122969447 122970281 + MGP_C3HHeJ_P0063130 Cnn3 protein_coding protein_coding MGP_C3HHeJ_T0013974.1 MGP_C3HHeJ_G0012078.1 mouse_genomes_project 3 77059186 77059558 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004324.1 MGP_C3HHeJ_G0003768.1 mouse_genomes_project 3 149008548 149018571 + Gm16325 antisense antisense MGP_C3HHeJ_T0004325.1 MGP_C3HHeJ_G0003768.1 mouse_genomes_project 3 149015464 149016368 + Gm16325 antisense antisense MGP_C3HHeJ_T0101969.1 MGP_C3HHeJ_G0039934.1 mouse_genomes_project 3 99338050 99339988 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100545.1 MGP_C3HHeJ_G0038739.1 mouse_genomes_project 3 69129755 69129883 - Gm23477 snoRNA snoRNA MGP_C3HHeJ_T0063641.1 MGP_C3HHeJ_G0027625.1 mouse_genomes_project 3 140166540 140184980 - MGP_C3HHeJ_P0063641 4930579F01Rik protein_coding protein_coding MGP_C3HHeJ_T0063642.1 MGP_C3HHeJ_G0027625.1 mouse_genomes_project 3 140166597 140185020 - MGP_C3HHeJ_P0063642 4930579F01Rik protein_coding protein_coding MGP_C3HHeJ_T0063643.1 MGP_C3HHeJ_G0027625.1 mouse_genomes_project 3 140180221 140192067 - 4930579F01Rik protein_coding processed_transcript MGP_C3HHeJ_T0061110.1 MGP_C3HHeJ_G0027081.1 mouse_genomes_project 3 87100292 87187270 + Arhgef11 protein_coding retained_intron MGP_C3HHeJ_T0061111.1 MGP_C3HHeJ_G0027081.1 mouse_genomes_project 3 87100308 87227797 + MGP_C3HHeJ_P0061111 Arhgef11 protein_coding protein_coding MGP_C3HHeJ_T0061112.1 MGP_C3HHeJ_G0027081.1 mouse_genomes_project 3 87100318 87225673 + MGP_C3HHeJ_P0061112 Arhgef11 protein_coding protein_coding MGP_C3HHeJ_T0061113.1 MGP_C3HHeJ_G0027081.1 mouse_genomes_project 3 87100325 87207203 + Arhgef11 protein_coding retained_intron MGP_C3HHeJ_T0061114.1 MGP_C3HHeJ_G0027081.1 mouse_genomes_project 3 87100834 87227798 + MGP_C3HHeJ_P0061114 Arhgef11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061115.1 MGP_C3HHeJ_G0027081.1 mouse_genomes_project 3 87101509 87226866 + MGP_C3HHeJ_P0061115 Arhgef11 protein_coding unknown_likely_coding MGP_C3HHeJ_T0001120.1 MGP_C3HHeJ_G0001054.1 mouse_genomes_project 3 35490519 35492593 - TEC TEC MGP_C3HHeJ_T0062346.1 MGP_C3HHeJ_G0027359.1 mouse_genomes_project 3 99275743 99282624 - MGP_C3HHeJ_P0062346 Hsd3b3 protein_coding protein_coding MGP_C3HHeJ_T0062347.1 MGP_C3HHeJ_G0027359.1 mouse_genomes_project 3 99275743 99282624 - MGP_C3HHeJ_P0062347 Hsd3b3 protein_coding protein_coding MGP_C3HHeJ_T0062348.1 MGP_C3HHeJ_G0027359.1 mouse_genomes_project 3 99275743 99282622 - MGP_C3HHeJ_P0062348 Hsd3b3 protein_coding protein_coding MGP_C3HHeJ_T0062349.1 MGP_C3HHeJ_G0027359.1 mouse_genomes_project 3 99276655 99292221 - MGP_C3HHeJ_P0062349 Hsd3b3 protein_coding protein_coding MGP_C3HHeJ_T0062350.1 MGP_C3HHeJ_G0027359.1 mouse_genomes_project 3 99287524 99292207 - Hsd3b3 protein_coding processed_transcript MGP_C3HHeJ_T0004252.1 MGP_C3HHeJ_G0003722.1 mouse_genomes_project 3 105234657 105243001 + Gm43257 antisense antisense MGP_C3HHeJ_T0004133.1 MGP_C3HHeJ_G0003639.1 mouse_genomes_project 3 26242432 26323183 - antisense antisense MGP_C3HHeJ_T0004134.1 MGP_C3HHeJ_G0003639.1 mouse_genomes_project 3 26278265 26281701 - antisense antisense MGP_C3HHeJ_T0007627.1 MGP_C3HHeJ_G0006233.1 mouse_genomes_project 3 135449432 135474194 - Gm42563 lincRNA lincRNA MGP_C3HHeJ_T0099250.1 MGP_C3HHeJ_G0037444.1 mouse_genomes_project 3 52142143 52142246 + Gm24851 snRNA snRNA MGP_C3HHeJ_T0007614.1 MGP_C3HHeJ_G0006222.1 mouse_genomes_project 3 130788364 130791104 - Gm28543 lincRNA lincRNA MGP_C3HHeJ_T0061432.1 MGP_C3HHeJ_G0027136.1 mouse_genomes_project 3 88737574 88743328 + MGP_C3HHeJ_P0061432 Gba protein_coding protein_coding MGP_C3HHeJ_T0061433.1 MGP_C3HHeJ_G0027136.1 mouse_genomes_project 3 88737582 88743330 + MGP_C3HHeJ_P0061433 Gba protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061434.1 MGP_C3HHeJ_G0027136.1 mouse_genomes_project 3 88737586 88743330 + MGP_C3HHeJ_P0061434 Gba protein_coding protein_coding MGP_C3HHeJ_T0061435.1 MGP_C3HHeJ_G0027136.1 mouse_genomes_project 3 88740133 88741037 + Gba protein_coding retained_intron MGP_C3HHeJ_T0061436.1 MGP_C3HHeJ_G0027136.1 mouse_genomes_project 3 88742865 88743615 + Gba protein_coding retained_intron MGP_C3HHeJ_T0001127.1 MGP_C3HHeJ_G0001061.1 mouse_genomes_project 3 37529185 37532165 + TEC TEC MGP_C3HHeJ_T0007453.1 MGP_C3HHeJ_G0006099.1 mouse_genomes_project 3 49568602 49576683 + Gm5103 lincRNA lincRNA MGP_C3HHeJ_T0007454.1 MGP_C3HHeJ_G0006099.1 mouse_genomes_project 3 49568654 49576690 + Gm5103 lincRNA lincRNA MGP_C3HHeJ_T0004330.1 MGP_C3HHeJ_G0003772.1 mouse_genomes_project 3 155540768 155541929 + Gm16213 antisense antisense MGP_C3HHeJ_T0001153.1 MGP_C3HHeJ_G0001087.1 mouse_genomes_project 3 49623791 49623902 + TEC TEC MGP_C3HHeJ_T0062983.1 MGP_C3HHeJ_G0027504.1 mouse_genomes_project 3 116968662 116973326 - MGP_C3HHeJ_P0062983 S1pr1 protein_coding protein_coding MGP_C3HHeJ_T0013796.1 MGP_C3HHeJ_G0011900.1 mouse_genomes_project 3 16888943 16889159 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013813.1 MGP_C3HHeJ_G0011917.1 mouse_genomes_project 3 23837977 23839944 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061530.1 MGP_C3HHeJ_G0027153.1 mouse_genomes_project 3 88963921 88966860 - MGP_C3HHeJ_P0061530 Cks1b protein_coding protein_coding MGP_C3HHeJ_T0061531.1 MGP_C3HHeJ_G0027153.1 mouse_genomes_project 3 88964006 88966494 - MGP_C3HHeJ_P0061531 Cks1b protein_coding protein_coding MGP_C3HHeJ_T0061532.1 MGP_C3HHeJ_G0027153.1 mouse_genomes_project 3 88964293 88966696 - MGP_C3HHeJ_P0061532 Cks1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014222.1 MGP_C3HHeJ_G0012326.1 mouse_genomes_project 3 162285153 162285375 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001245.1 MGP_C3HHeJ_G0001177.1 mouse_genomes_project 3 107399529 107402113 + TEC TEC MGP_C3HHeJ_T0007355.1 MGP_C3HHeJ_G0006029.1 mouse_genomes_project 3 1933450 1934714 + 1110015O18Rik lincRNA lincRNA MGP_C3HHeJ_T0007356.1 MGP_C3HHeJ_G0006029.1 mouse_genomes_project 3 1934600 1950958 + 1110015O18Rik lincRNA lincRNA MGP_C3HHeJ_T0007357.1 MGP_C3HHeJ_G0006029.1 mouse_genomes_project 3 1935539 1950022 + 1110015O18Rik lincRNA lincRNA MGP_C3HHeJ_T0060491.1 MGP_C3HHeJ_G0026933.1 mouse_genomes_project 3 53137152 53141829 - MGP_C3HHeJ_P0060491 Rfxap protein_coding protein_coding MGP_C3HHeJ_T0060492.1 MGP_C3HHeJ_G0026933.1 mouse_genomes_project 3 53138257 53139805 - Rfxap protein_coding processed_transcript MGP_C3HHeJ_T0060493.1 MGP_C3HHeJ_G0026933.1 mouse_genomes_project 3 53139812 53141458 - Rfxap protein_coding processed_transcript MGP_C3HHeJ_T0060045.1 MGP_C3HHeJ_G0026856.1 mouse_genomes_project 3 30384858 30397174 + MGP_C3HHeJ_P0060045 Actl6a protein_coding protein_coding MGP_C3HHeJ_T0060046.1 MGP_C3HHeJ_G0026856.1 mouse_genomes_project 3 30387067 30405534 + MGP_C3HHeJ_P0060046 Actl6a protein_coding protein_coding MGP_C3HHeJ_T0060047.1 MGP_C3HHeJ_G0026856.1 mouse_genomes_project 3 30387110 30388567 + Actl6a protein_coding retained_intron MGP_C3HHeJ_T0060048.1 MGP_C3HHeJ_G0026856.1 mouse_genomes_project 3 30387325 30397168 + MGP_C3HHeJ_P0060048 Actl6a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060049.1 MGP_C3HHeJ_G0026856.1 mouse_genomes_project 3 30387724 30397217 + MGP_C3HHeJ_P0060049 Actl6a protein_coding protein_coding MGP_C3HHeJ_T0060050.1 MGP_C3HHeJ_G0026856.1 mouse_genomes_project 3 30389943 30390731 + Actl6a protein_coding retained_intron MGP_C3HHeJ_T0060051.1 MGP_C3HHeJ_G0026856.1 mouse_genomes_project 3 30390732 30405334 + MGP_C3HHeJ_P0060051 Actl6a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060052.1 MGP_C3HHeJ_G0026856.1 mouse_genomes_project 3 30397127 30405529 + Actl6a protein_coding retained_intron MGP_C3HHeJ_T0004321.1 MGP_C3HHeJ_G0003765.1 mouse_genomes_project 3 143737445 143757433 - Gm15689 antisense antisense MGP_C3HHeJ_T0014201.1 MGP_C3HHeJ_G0012305.1 mouse_genomes_project 3 148063137 148063577 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059839.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19428928 19577680 + MGP_C3HHeJ_P0059839 Tbl1xr1 protein_coding protein_coding MGP_C3HHeJ_T0059840.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19429003 19573837 + MGP_C3HHeJ_P0059840 Tbl1xr1 protein_coding protein_coding MGP_C3HHeJ_T0059841.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19429032 19546986 + Tbl1xr1 protein_coding processed_transcript MGP_C3HHeJ_T0059842.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19429108 19550118 + MGP_C3HHeJ_P0059842 Tbl1xr1 protein_coding protein_coding MGP_C3HHeJ_T0059843.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19429157 19548944 + Tbl1xr1 protein_coding processed_transcript MGP_C3HHeJ_T0059844.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19429212 19546954 + MGP_C3HHeJ_P0059844 Tbl1xr1 protein_coding protein_coding MGP_C3HHeJ_T0059845.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19429560 19576379 + MGP_C3HHeJ_P0059845 Tbl1xr1 protein_coding protein_coding MGP_C3HHeJ_T0059846.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19466883 19573054 + MGP_C3HHeJ_P0059846 Tbl1xr1 protein_coding protein_coding MGP_C3HHeJ_T0059847.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19491624 19548937 + MGP_C3HHeJ_P0059847 Tbl1xr1 protein_coding protein_coding MGP_C3HHeJ_T0059848.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19501292 19574161 + MGP_C3HHeJ_P0059848 Tbl1xr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059849.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19564277 19571665 + MGP_C3HHeJ_P0059849 Tbl1xr1 protein_coding protein_coding MGP_C3HHeJ_T0062224.1 MGP_C3HHeJ_G0027330.1 mouse_genomes_project 3 96934130 96951752 + MGP_C3HHeJ_P0062224 Gm42957 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0004219.1 MGP_C3HHeJ_G0003702.1 mouse_genomes_project 3 95144740 95151123 - Gm15265 antisense antisense MGP_C3HHeJ_T0004220.1 MGP_C3HHeJ_G0003702.1 mouse_genomes_project 3 95144774 95151546 - Gm15265 antisense antisense MGP_C3HHeJ_T0061782.1 MGP_C3HHeJ_G0027209.1 mouse_genomes_project 3 92270031 92271346 + MGP_C3HHeJ_P0061782 Sprr2j-ps protein_coding protein_coding MGP_C3HHeJ_T0062715.1 MGP_C3HHeJ_G0027440.1 mouse_genomes_project 3 107756880 107757907 - MGP_C3HHeJ_P0062715 Olfr266 protein_coding protein_coding MGP_C3HHeJ_T0062009.1 MGP_C3HHeJ_G0027281.1 mouse_genomes_project 3 95411303 95415944 - MGP_C3HHeJ_P0062009 Gm128 protein_coding protein_coding MGP_C3HHeJ_T0062010.1 MGP_C3HHeJ_G0027281.1 mouse_genomes_project 3 95411490 95415944 - MGP_C3HHeJ_P0062010 Gm128 protein_coding protein_coding MGP_C3HHeJ_T0060858.1 MGP_C3HHeJ_G0027022.1 mouse_genomes_project 3 74394154 74592007 - MGP_C3HHeJ_P0060858 Wdr49 protein_coding unknown_likely_coding MGP_C3HHeJ_T0060859.1 MGP_C3HHeJ_G0027022.1 mouse_genomes_project 3 74394154 74592057 - MGP_C3HHeJ_P0060859 Wdr49 protein_coding protein_coding MGP_C3HHeJ_T0060860.1 MGP_C3HHeJ_G0027022.1 mouse_genomes_project 3 74510353 74566921 - MGP_C3HHeJ_P0060860 Wdr49 protein_coding protein_coding MGP_C3HHeJ_T0060861.1 MGP_C3HHeJ_G0027022.1 mouse_genomes_project 3 74510353 74592058 - MGP_C3HHeJ_P0060861 Wdr49 protein_coding protein_coding MGP_C3HHeJ_T0060862.1 MGP_C3HHeJ_G0027022.1 mouse_genomes_project 3 74589718 74592473 - Wdr49 protein_coding retained_intron MGP_C3HHeJ_T0010449.1 MGP_C3HHeJ_G0008582.1 mouse_genomes_project 3 93325581 93325690 - Gm22752 miRNA miRNA MGP_C3HHeJ_T0061819.1 MGP_C3HHeJ_G0027242.1 mouse_genomes_project 3 93051726 93056416 + MGP_C3HHeJ_P0061819 Crnn protein_coding protein_coding MGP_C3HHeJ_T0061820.1 MGP_C3HHeJ_G0027242.1 mouse_genomes_project 3 93051728 93056776 + MGP_C3HHeJ_P0061820 Crnn protein_coding protein_coding MGP_C3HHeJ_T0061821.1 MGP_C3HHeJ_G0027242.1 mouse_genomes_project 3 93055154 93056775 + MGP_C3HHeJ_P0061821 Crnn protein_coding protein_coding MGP_C3HHeJ_T0063197.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124520530 124574632 - MGP_C3HHeJ_P0063197 Usp53 protein_coding protein_coding MGP_C3HHeJ_T0063198.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124536234 124538665 - Usp53 protein_coding retained_intron MGP_C3HHeJ_T0063199.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124540334 124574445 - MGP_C3HHeJ_P0063199 Usp53 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063200.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124541508 124574628 - MGP_C3HHeJ_P0063200 Usp53 protein_coding protein_coding MGP_C3HHeJ_T0063201.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124544447 124574626 - MGP_C3HHeJ_P0063201 Usp53 protein_coding protein_coding MGP_C3HHeJ_T0063202.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124545940 124574632 - Usp53 protein_coding retained_intron MGP_C3HHeJ_T0063203.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124547799 124551336 - Usp53 protein_coding retained_intron MGP_C3HHeJ_T0063204.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124547842 124574593 - MGP_C3HHeJ_P0063204 Usp53 protein_coding protein_coding MGP_C3HHeJ_T0063205.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124549647 124553056 - Usp53 protein_coding retained_intron MGP_C3HHeJ_T0063206.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124557967 124574015 - Usp53 protein_coding retained_intron MGP_C3HHeJ_T0013899.1 MGP_C3HHeJ_G0012003.1 mouse_genomes_project 3 55497190 55499294 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001309.1 MGP_C3HHeJ_G0001240.1 mouse_genomes_project 3 131132330 131135778 + TEC TEC MGP_C3HHeJ_T0062593.1 MGP_C3HHeJ_G0027412.1 mouse_genomes_project 3 105638614 105644058 + MGP_C3HHeJ_P0062593 Rhoc protein_coding protein_coding MGP_C3HHeJ_T0062594.1 MGP_C3HHeJ_G0027412.1 mouse_genomes_project 3 105638825 105642573 + MGP_C3HHeJ_P0062594 Rhoc protein_coding protein_coding MGP_C3HHeJ_T0062595.1 MGP_C3HHeJ_G0027412.1 mouse_genomes_project 3 105641578 105642476 + Rhoc protein_coding retained_intron MGP_C3HHeJ_T0060490.1 MGP_C3HHeJ_G0026932.1 mouse_genomes_project 3 53084947 53135295 + MGP_C3HHeJ_P0060490 Smad9 protein_coding protein_coding MGP_C3HHeJ_T0060345.1 MGP_C3HHeJ_G0026904.1 mouse_genomes_project 3 43346645 43351293 + MGP_C3HHeJ_P0060345 Pcdh10 protein_coding protein_coding MGP_C3HHeJ_T0060346.1 MGP_C3HHeJ_G0026904.1 mouse_genomes_project 3 43346653 43371477 + MGP_C3HHeJ_P0060346 Pcdh10 protein_coding protein_coding MGP_C3HHeJ_T0060347.1 MGP_C3HHeJ_G0026904.1 mouse_genomes_project 3 43346672 43405151 + MGP_C3HHeJ_P0060347 Pcdh10 protein_coding protein_coding MGP_C3HHeJ_T0060348.1 MGP_C3HHeJ_G0026904.1 mouse_genomes_project 3 43346674 43393225 + MGP_C3HHeJ_P0060348 Pcdh10 protein_coding protein_coding MGP_C3HHeJ_T0060349.1 MGP_C3HHeJ_G0026904.1 mouse_genomes_project 3 43350890 43402012 + Pcdh10 protein_coding processed_transcript MGP_C3HHeJ_T0061817.1 MGP_C3HHeJ_G0027241.1 mouse_genomes_project 3 92891927 92893154 - MGP_C3HHeJ_P0061817 Lce1m protein_coding protein_coding MGP_C3HHeJ_T0061818.1 MGP_C3HHeJ_G0027241.1 mouse_genomes_project 3 92892600 92893153 - MGP_C3HHeJ_P0061818 Lce1m protein_coding protein_coding MGP_C3HHeJ_T0004319.1 MGP_C3HHeJ_G0003763.1 mouse_genomes_project 3 140274603 140302584 - Gm16559 antisense antisense MGP_C3HHeJ_T0013946.1 MGP_C3HHeJ_G0012050.1 mouse_genomes_project 3 67699493 67700703 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013923.1 MGP_C3HHeJ_G0012027.1 mouse_genomes_project 3 60622012 60624259 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098412.1 MGP_C3HHeJ_G0036617.1 mouse_genomes_project 3 94625842 94626720 - Gm43774 sense_intronic sense_intronic MGP_C3HHeJ_T0004301.1 MGP_C3HHeJ_G0003752.1 mouse_genomes_project 3 131525362 131537825 + 6330410L21Rik antisense antisense MGP_C3HHeJ_T0013898.1 MGP_C3HHeJ_G0012002.1 mouse_genomes_project 3 55198599 55199070 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060944.1 MGP_C3HHeJ_G0027038.1 mouse_genomes_project 3 80290699 80471738 + MGP_C3HHeJ_P0060944 Pdgfc protein_coding protein_coding MGP_C3HHeJ_T0060945.1 MGP_C3HHeJ_G0027038.1 mouse_genomes_project 3 80291455 80471732 + MGP_C3HHeJ_P0060945 Pdgfc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060946.1 MGP_C3HHeJ_G0027038.1 mouse_genomes_project 3 80291707 80468468 + MGP_C3HHeJ_P0060946 Pdgfc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063191.1 MGP_C3HHeJ_G0027542.1 mouse_genomes_project 3 124301154 124442784 + MGP_C3HHeJ_P0063191 Pde5a protein_coding protein_coding MGP_C3HHeJ_T0063192.1 MGP_C3HHeJ_G0027542.1 mouse_genomes_project 3 124301777 124442782 + MGP_C3HHeJ_P0063192 Pde5a protein_coding protein_coding MGP_C3HHeJ_T0063193.1 MGP_C3HHeJ_G0027542.1 mouse_genomes_project 3 124302429 124350293 + Pde5a protein_coding retained_intron MGP_C3HHeJ_T0004176.1 MGP_C3HHeJ_G0003670.1 mouse_genomes_project 3 57787346 57794024 + Gm38186 antisense antisense MGP_C3HHeJ_T0062194.1 MGP_C3HHeJ_G0027315.1 mouse_genomes_project 3 96471345 96473966 + MGP_C3HHeJ_P0062194 Hist2h2be protein_coding protein_coding MGP_C3HHeJ_T0100591.1 MGP_C3HHeJ_G0038785.1 mouse_genomes_project 3 156518736 156518861 + Gm24395 snoRNA snoRNA MGP_C3HHeJ_T0001324.1 MGP_C3HHeJ_G0001255.1 mouse_genomes_project 3 135435393 135445099 - TEC TEC MGP_C3HHeJ_T0062996.1 MGP_C3HHeJ_G0027507.1 mouse_genomes_project 3 117265487 117266499 + Extl2 protein_coding processed_transcript MGP_C3HHeJ_T0062997.1 MGP_C3HHeJ_G0027507.1 mouse_genomes_project 3 117265525 117282111 + Extl2 protein_coding processed_transcript MGP_C3HHeJ_T0062998.1 MGP_C3HHeJ_G0027507.1 mouse_genomes_project 3 117265830 117268870 + Extl2 protein_coding processed_transcript MGP_C3HHeJ_T0062999.1 MGP_C3HHeJ_G0027507.1 mouse_genomes_project 3 117268693 117285415 + MGP_C3HHeJ_P0062999 Extl2 protein_coding protein_coding MGP_C3HHeJ_T0064081.1 MGP_C3HHeJ_G0027704.1 mouse_genomes_project 3 157266077 157282864 - Tyw3 protein_coding processed_transcript MGP_C3HHeJ_T0064082.1 MGP_C3HHeJ_G0027704.1 mouse_genomes_project 3 157266310 157285355 - MGP_C3HHeJ_P0064082 Tyw3 protein_coding protein_coding MGP_C3HHeJ_T0064083.1 MGP_C3HHeJ_G0027704.1 mouse_genomes_project 3 157275834 157285433 - MGP_C3HHeJ_P0064083 Tyw3 protein_coding protein_coding MGP_C3HHeJ_T0099239.1 MGP_C3HHeJ_G0037433.1 mouse_genomes_project 3 16874765 16874929 + Gm23330 snRNA snRNA MGP_C3HHeJ_T0101420.1 MGP_C3HHeJ_G0039451.1 mouse_genomes_project 3 147119653 147146903 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101421.1 MGP_C3HHeJ_G0039451.1 mouse_genomes_project 3 147137411 147154215 - transcribed_unprocessed_pseudogene retained_intron MGP_C3HHeJ_T0062430.1 MGP_C3HHeJ_G0027382.1 mouse_genomes_project 3 102854464 102911418 - MGP_C3HHeJ_P0062430 Vangl1 protein_coding protein_coding MGP_C3HHeJ_T0062431.1 MGP_C3HHeJ_G0027382.1 mouse_genomes_project 3 102860403 102870277 - MGP_C3HHeJ_P0062431 Vangl1 protein_coding protein_coding MGP_C3HHeJ_T0062432.1 MGP_C3HHeJ_G0027382.1 mouse_genomes_project 3 102860403 102910688 - MGP_C3HHeJ_P0062432 Vangl1 protein_coding protein_coding MGP_C3HHeJ_T0062433.1 MGP_C3HHeJ_G0027382.1 mouse_genomes_project 3 102860456 102902699 - MGP_C3HHeJ_P0062433 Vangl1 protein_coding protein_coding MGP_C3HHeJ_T0062434.1 MGP_C3HHeJ_G0027382.1 mouse_genomes_project 3 102866544 102870320 - Vangl1 protein_coding retained_intron MGP_C3HHeJ_T0062435.1 MGP_C3HHeJ_G0027382.1 mouse_genomes_project 3 102866721 102869288 - Vangl1 protein_coding processed_transcript MGP_C3HHeJ_T0062436.1 MGP_C3HHeJ_G0027382.1 mouse_genomes_project 3 102889362 102903750 - MGP_C3HHeJ_P0062436 Vangl1 protein_coding protein_coding MGP_C3HHeJ_T0062437.1 MGP_C3HHeJ_G0027382.1 mouse_genomes_project 3 102902667 102910606 - MGP_C3HHeJ_P0062437 Vangl1 protein_coding protein_coding MGP_C3HHeJ_T0007411.1 MGP_C3HHeJ_G0006068.1 mouse_genomes_project 3 32167363 32175088 - Gm20515 lincRNA lincRNA MGP_C3HHeJ_T0059686.1 MGP_C3HHeJ_G0026771.1 mouse_genomes_project 3 6990627 7145986 - MGP_C3HHeJ_P0059686 Pag1 protein_coding protein_coding MGP_C3HHeJ_T0059687.1 MGP_C3HHeJ_G0026771.1 mouse_genomes_project 3 6995012 7145937 - MGP_C3HHeJ_P0059687 Pag1 protein_coding protein_coding MGP_C3HHeJ_T0059688.1 MGP_C3HHeJ_G0026771.1 mouse_genomes_project 3 6995881 7008119 - Pag1 protein_coding retained_intron MGP_C3HHeJ_T0059689.1 MGP_C3HHeJ_G0026771.1 mouse_genomes_project 3 7052200 7145670 - Pag1 protein_coding retained_intron MGP_C3HHeJ_T0059690.1 MGP_C3HHeJ_G0026771.1 mouse_genomes_project 3 7139751 7145937 - Pag1 protein_coding processed_transcript MGP_C3HHeJ_T0013889.1 MGP_C3HHeJ_G0011993.1 mouse_genomes_project 3 50466606 50467357 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100588.1 MGP_C3HHeJ_G0038782.1 mouse_genomes_project 3 150768190 150768322 - Gm23131 snoRNA snoRNA MGP_C3HHeJ_T0100582.1 MGP_C3HHeJ_G0038776.1 mouse_genomes_project 3 132694081 132694209 - Gm26090 snoRNA snoRNA MGP_C3HHeJ_T0001269.1 MGP_C3HHeJ_G0001201.1 mouse_genomes_project 3 123241360 123243168 - TEC TEC MGP_C3HHeJ_T0007591.1 MGP_C3HHeJ_G0006206.1 mouse_genomes_project 3 119353188 119357557 + 4921521D15Rik lincRNA lincRNA MGP_C3HHeJ_T0100550.1 MGP_C3HHeJ_G0038744.1 mouse_genomes_project 3 85367980 85368099 + Gm25876 snoRNA snoRNA MGP_C3HHeJ_T0014094.1 MGP_C3HHeJ_G0012198.1 mouse_genomes_project 3 113328915 113329215 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014082.1 MGP_C3HHeJ_G0012186.1 mouse_genomes_project 3 108998389 109000423 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013957.1 MGP_C3HHeJ_G0012061.1 mouse_genomes_project 3 70352221 70352677 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004237.1 MGP_C3HHeJ_G0003713.1 mouse_genomes_project 3 98085333 98091127 + Gm43076 antisense antisense MGP_C3HHeJ_T0004238.1 MGP_C3HHeJ_G0003713.1 mouse_genomes_project 3 98085523 98088052 + Gm43076 antisense antisense MGP_C3HHeJ_T0061772.1 MGP_C3HHeJ_G0027200.1 mouse_genomes_project 3 91914527 91917399 - MGP_C3HHeJ_P0061772 Lor protein_coding protein_coding MGP_C3HHeJ_T0061828.1 MGP_C3HHeJ_G0027246.1 mouse_genomes_project 3 93334199 93342548 + MGP_C3HHeJ_P0061828 Tchh protein_coding protein_coding MGP_C3HHeJ_T0004279.1 MGP_C3HHeJ_G0003735.1 mouse_genomes_project 3 117625366 117628152 + Gm29151 antisense antisense MGP_C3HHeJ_T0007517.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87738125 87742600 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007518.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87738138 87757174 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007519.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87738618 87757731 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007520.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87740776 87756024 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007521.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87746158 87753596 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007522.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87746168 87757782 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007523.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87754399 87756038 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007524.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87756015 87761720 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007525.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87757668 87759777 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007526.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87760330 87761531 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007527.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87760545 87761720 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0062964.1 MGP_C3HHeJ_G0027501.1 mouse_genomes_project 3 114811813 114836731 - MGP_C3HHeJ_P0062964 Rnpc3 protein_coding protein_coding MGP_C3HHeJ_T0062965.1 MGP_C3HHeJ_G0027501.1 mouse_genomes_project 3 114812212 114836615 - MGP_C3HHeJ_P0062965 Rnpc3 protein_coding protein_coding MGP_C3HHeJ_T0062966.1 MGP_C3HHeJ_G0027501.1 mouse_genomes_project 3 114812219 114836731 - MGP_C3HHeJ_P0062966 Rnpc3 protein_coding protein_coding MGP_C3HHeJ_T0062967.1 MGP_C3HHeJ_G0027501.1 mouse_genomes_project 3 114813091 114836731 - MGP_C3HHeJ_P0062967 Rnpc3 protein_coding protein_coding MGP_C3HHeJ_T0062968.1 MGP_C3HHeJ_G0027501.1 mouse_genomes_project 3 114817888 114822022 - Rnpc3 protein_coding processed_transcript MGP_C3HHeJ_T0062969.1 MGP_C3HHeJ_G0027501.1 mouse_genomes_project 3 114823134 114828547 - Rnpc3 protein_coding processed_transcript MGP_C3HHeJ_T0062970.1 MGP_C3HHeJ_G0027501.1 mouse_genomes_project 3 114823383 114827898 - Rnpc3 protein_coding processed_transcript MGP_C3HHeJ_T0062971.1 MGP_C3HHeJ_G0027501.1 mouse_genomes_project 3 114833659 114836661 - Rnpc3 protein_coding retained_intron MGP_C3HHeJ_T0063663.1 MGP_C3HHeJ_G0027631.1 mouse_genomes_project 3 140465024 140496828 - MGP_C3HHeJ_P0063663 Metap1 protein_coding protein_coding MGP_C3HHeJ_T0063664.1 MGP_C3HHeJ_G0027631.1 mouse_genomes_project 3 140465749 140475141 - MGP_C3HHeJ_P0063664 Metap1 protein_coding protein_coding MGP_C3HHeJ_T0063665.1 MGP_C3HHeJ_G0027631.1 mouse_genomes_project 3 140472306 140481303 - Metap1 protein_coding retained_intron MGP_C3HHeJ_T0063666.1 MGP_C3HHeJ_G0027631.1 mouse_genomes_project 3 140472367 140481392 - Metap1 protein_coding retained_intron MGP_C3HHeJ_T0063667.1 MGP_C3HHeJ_G0027631.1 mouse_genomes_project 3 140475139 140487784 - Metap1 protein_coding processed_transcript MGP_C3HHeJ_T0063668.1 MGP_C3HHeJ_G0027631.1 mouse_genomes_project 3 140481647 140496712 - MGP_C3HHeJ_P0063668 Metap1 protein_coding protein_coding MGP_C3HHeJ_T0063669.1 MGP_C3HHeJ_G0027631.1 mouse_genomes_project 3 140486257 140496682 - Metap1 protein_coding retained_intron MGP_C3HHeJ_T0099311.1 MGP_C3HHeJ_G0037505.1 mouse_genomes_project 3 139687042 139687147 + Gm25080 snRNA snRNA MGP_C3HHeJ_T0007437.1 MGP_C3HHeJ_G0006089.1 mouse_genomes_project 3 39057311 39066936 - Gm42784 lincRNA lincRNA MGP_C3HHeJ_T0001213.1 MGP_C3HHeJ_G0001145.1 mouse_genomes_project 3 75720430 75723991 + TEC TEC MGP_C3HHeJ_T0017792.1 MGP_C3HHeJ_G0015288.1 mouse_genomes_project 3 137757634 137764656 - 4933401H06Rik processed_transcript macro_lncRNA MGP_C3HHeJ_T0017793.1 MGP_C3HHeJ_G0015288.1 mouse_genomes_project 3 137757737 137764656 - 4933401H06Rik processed_transcript antisense MGP_C3HHeJ_T0007548.1 MGP_C3HHeJ_G0006169.1 mouse_genomes_project 3 96746714 96759329 + lincRNA lincRNA MGP_C3HHeJ_T0004329.1 MGP_C3HHeJ_G0003771.1 mouse_genomes_project 3 155269325 155285614 + AI115009 antisense antisense MGP_C3HHeJ_T0063862.1 MGP_C3HHeJ_G0027673.1 mouse_genomes_project 3 148815827 148828662 - MGP_C3HHeJ_P0063862 Spata1 protein_coding protein_coding MGP_C3HHeJ_T0063863.1 MGP_C3HHeJ_G0027673.1 mouse_genomes_project 3 148815833 148852040 - MGP_C3HHeJ_P0063863 Spata1 protein_coding protein_coding MGP_C3HHeJ_T0063864.1 MGP_C3HHeJ_G0027673.1 mouse_genomes_project 3 148815834 148857946 - MGP_C3HHeJ_P0063864 Spata1 protein_coding protein_coding MGP_C3HHeJ_T0063865.1 MGP_C3HHeJ_G0027673.1 mouse_genomes_project 3 148824871 148835023 - MGP_C3HHeJ_P0063865 Spata1 protein_coding protein_coding MGP_C3HHeJ_T0063866.1 MGP_C3HHeJ_G0027673.1 mouse_genomes_project 3 148828548 148840768 - Spata1 protein_coding processed_transcript MGP_C3HHeJ_T0063867.1 MGP_C3HHeJ_G0027673.1 mouse_genomes_project 3 148834110 148857902 - Spata1 protein_coding processed_transcript MGP_C3HHeJ_T0063868.1 MGP_C3HHeJ_G0027673.1 mouse_genomes_project 3 148842657 148853310 - MGP_C3HHeJ_P0063868 Spata1 protein_coding protein_coding MGP_C3HHeJ_T0060056.1 MGP_C3HHeJ_G0026858.1 mouse_genomes_project 3 30421421 30434133 + MGP_C3HHeJ_P0060056 Ndufb5 protein_coding protein_coding MGP_C3HHeJ_T0060057.1 MGP_C3HHeJ_G0026858.1 mouse_genomes_project 3 30421426 30424551 + Ndufb5 protein_coding retained_intron MGP_C3HHeJ_T0060058.1 MGP_C3HHeJ_G0026858.1 mouse_genomes_project 3 30421432 30436798 + MGP_C3HHeJ_P0060058 Ndufb5 protein_coding protein_coding MGP_C3HHeJ_T0060059.1 MGP_C3HHeJ_G0026858.1 mouse_genomes_project 3 30421456 30436479 + MGP_C3HHeJ_P0060059 Ndufb5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060060.1 MGP_C3HHeJ_G0026858.1 mouse_genomes_project 3 30421457 30433704 + MGP_C3HHeJ_P0060060 Ndufb5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060061.1 MGP_C3HHeJ_G0026858.1 mouse_genomes_project 3 30425943 30436335 + MGP_C3HHeJ_P0060061 Ndufb5 protein_coding protein_coding MGP_C3HHeJ_T0100576.1 MGP_C3HHeJ_G0038770.1 mouse_genomes_project 3 121105571 121105702 - Gm23432 snoRNA snoRNA MGP_C3HHeJ_T0007613.1 MGP_C3HHeJ_G0006221.1 mouse_genomes_project 3 130411634 130413652 - 4933424H11Rik lincRNA lincRNA MGP_C3HHeJ_T0014176.1 MGP_C3HHeJ_G0012280.1 mouse_genomes_project 3 139898272 139898630 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014161.1 MGP_C3HHeJ_G0012265.1 mouse_genomes_project 3 136852618 136853072 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013839.1 MGP_C3HHeJ_G0011943.1 mouse_genomes_project 3 34656959 34657566 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099298.1 MGP_C3HHeJ_G0037492.1 mouse_genomes_project 3 109506150 109506273 + Gm23336 snRNA snRNA MGP_C3HHeJ_T0014080.1 MGP_C3HHeJ_G0012184.1 mouse_genomes_project 3 108958015 108958252 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100581.1 MGP_C3HHeJ_G0038775.1 mouse_genomes_project 3 130259708 130259817 + Gm22293 snoRNA snoRNA MGP_C3HHeJ_T0060616.1 MGP_C3HHeJ_G0026962.1 mouse_genomes_project 3 57668357 57679672 - MGP_C3HHeJ_P0060616 P2ry12 protein_coding protein_coding MGP_C3HHeJ_T0060617.1 MGP_C3HHeJ_G0026962.1 mouse_genomes_project 3 57668444 57713718 - MGP_C3HHeJ_P0060617 P2ry12 protein_coding protein_coding MGP_C3HHeJ_T0060618.1 MGP_C3HHeJ_G0026962.1 mouse_genomes_project 3 57668445 57672345 - MGP_C3HHeJ_P0060618 P2ry12 protein_coding protein_coding MGP_C3HHeJ_T0060619.1 MGP_C3HHeJ_G0026962.1 mouse_genomes_project 3 57668446 57713758 - MGP_C3HHeJ_P0060619 P2ry12 protein_coding protein_coding MGP_C3HHeJ_T0060620.1 MGP_C3HHeJ_G0026962.1 mouse_genomes_project 3 57669990 57672286 - MGP_C3HHeJ_P0060620 P2ry12 protein_coding protein_coding MGP_C3HHeJ_T0001117.1 MGP_C3HHeJ_G0001051.1 mouse_genomes_project 3 35079940 35080420 + TEC TEC MGP_C3HHeJ_T0013741.1 MGP_C3HHeJ_G0011845.1 mouse_genomes_project 3 1500850 1501067 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099303.1 MGP_C3HHeJ_G0037497.1 mouse_genomes_project 3 124029096 124029252 + Gm25153 snRNA snRNA MGP_C3HHeJ_T0001151.1 MGP_C3HHeJ_G0001085.1 mouse_genomes_project 3 49458716 49460341 + TEC TEC MGP_C3HHeJ_T0062815.1 MGP_C3HHeJ_G0027469.1 mouse_genomes_project 3 109135319 109142003 - MGP_C3HHeJ_P0062815 Gpr61 protein_coding protein_coding MGP_C3HHeJ_T0062816.1 MGP_C3HHeJ_G0027469.1 mouse_genomes_project 3 109135655 109142003 - MGP_C3HHeJ_P0062816 Gpr61 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007463.1 MGP_C3HHeJ_G0006107.1 mouse_genomes_project 3 52021594 52029951 + Gm43565 lincRNA lincRNA MGP_C3HHeJ_T0063063.1 MGP_C3HHeJ_G0027520.1 mouse_genomes_project 3 118180863 118238718 + MGP_C3HHeJ_P0063063 Frrs1 protein_coding protein_coding MGP_C3HHeJ_T0063064.1 MGP_C3HHeJ_G0027520.1 mouse_genomes_project 3 118180966 118224745 + MGP_C3HHeJ_P0063064 Frrs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063065.1 MGP_C3HHeJ_G0027520.1 mouse_genomes_project 3 118210469 118243554 + MGP_C3HHeJ_P0063065 Frrs1 protein_coding protein_coding MGP_C3HHeJ_T0063066.1 MGP_C3HHeJ_G0027520.1 mouse_genomes_project 3 118224665 118230458 + Frrs1 protein_coding retained_intron MGP_C3HHeJ_T0063067.1 MGP_C3HHeJ_G0027520.1 mouse_genomes_project 3 118225415 118232843 + Frrs1 protein_coding retained_intron MGP_C3HHeJ_T0063068.1 MGP_C3HHeJ_G0027520.1 mouse_genomes_project 3 118230446 118237681 + MGP_C3HHeJ_P0063068 Frrs1 protein_coding protein_coding MGP_C3HHeJ_T0063656.1 MGP_C3HHeJ_G0027630.1 mouse_genomes_project 3 140449291 140461569 + MGP_C3HHeJ_P0063656 Adh5 protein_coding protein_coding MGP_C3HHeJ_T0063657.1 MGP_C3HHeJ_G0027630.1 mouse_genomes_project 3 140449309 140452145 + Adh5 protein_coding retained_intron MGP_C3HHeJ_T0063658.1 MGP_C3HHeJ_G0027630.1 mouse_genomes_project 3 140449310 140453033 + Adh5 protein_coding retained_intron MGP_C3HHeJ_T0063659.1 MGP_C3HHeJ_G0027630.1 mouse_genomes_project 3 140449368 140451600 + Adh5 protein_coding retained_intron MGP_C3HHeJ_T0063660.1 MGP_C3HHeJ_G0027630.1 mouse_genomes_project 3 140449368 140454136 + MGP_C3HHeJ_P0063660 Adh5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063661.1 MGP_C3HHeJ_G0027630.1 mouse_genomes_project 3 140449379 140460873 + MGP_C3HHeJ_P0063661 Adh5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063662.1 MGP_C3HHeJ_G0027630.1 mouse_genomes_project 3 140460474 140461313 + Adh5 protein_coding retained_intron MGP_C3HHeJ_T0007633.1 MGP_C3HHeJ_G0006238.1 mouse_genomes_project 3 136311937 136512897 - lincRNA lincRNA MGP_C3HHeJ_T0060976.1 MGP_C3HHeJ_G0027046.1 mouse_genomes_project 3 82110493 82150473 - MGP_C3HHeJ_P0060976 Rbm46 protein_coding protein_coding MGP_C3HHeJ_T0060977.1 MGP_C3HHeJ_G0027046.1 mouse_genomes_project 3 82111080 82140642 - MGP_C3HHeJ_P0060977 Rbm46 protein_coding protein_coding MGP_C3HHeJ_T0060978.1 MGP_C3HHeJ_G0027046.1 mouse_genomes_project 3 82111083 82140642 - MGP_C3HHeJ_P0060978 Rbm46 protein_coding protein_coding MGP_C3HHeJ_T0101943.1 MGP_C3HHeJ_G0039908.1 mouse_genomes_project 3 57936528 57936765 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017755.1 MGP_C3HHeJ_G0015277.1 mouse_genomes_project 3 105598566 105622900 - Gm43584 processed_transcript processed_transcript MGP_C3HHeJ_T0001360.1 MGP_C3HHeJ_G0001291.1 mouse_genomes_project 3 159845107 159846688 + TEC TEC MGP_C3HHeJ_T0014054.1 MGP_C3HHeJ_G0012158.1 mouse_genomes_project 3 101861864 101862404 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011441.1 MGP_C3HHeJ_G0009574.1 mouse_genomes_project 3 32397503 32397611 + Gm27611 misc_RNA misc_RNA MGP_C3HHeJ_T0060717.1 MGP_C3HHeJ_G0026989.1 mouse_genomes_project 3 64342210 64369282 + MGP_C3HHeJ_P0060717 Tiparp protein_coding protein_coding MGP_C3HHeJ_T0060718.1 MGP_C3HHeJ_G0026989.1 mouse_genomes_project 3 64342260 64361358 + MGP_C3HHeJ_P0060718 Tiparp protein_coding protein_coding MGP_C3HHeJ_T0060719.1 MGP_C3HHeJ_G0026989.1 mouse_genomes_project 3 64359800 64366396 + Tiparp protein_coding processed_transcript MGP_C3HHeJ_T0001218.1 MGP_C3HHeJ_G0001150.1 mouse_genomes_project 3 79348060 79350385 + TEC TEC MGP_C3HHeJ_T0099317.1 MGP_C3HHeJ_G0037511.1 mouse_genomes_project 3 151788572 151788678 - Gm26468 snRNA snRNA MGP_C3HHeJ_T0060630.1 MGP_C3HHeJ_G0026968.1 mouse_genomes_project 3 58498276 58512809 + Aadac protein_coding processed_transcript MGP_C3HHeJ_T0060631.1 MGP_C3HHeJ_G0026968.1 mouse_genomes_project 3 58504150 58514465 + MGP_C3HHeJ_P0060631 Aadac protein_coding protein_coding MGP_C3HHeJ_T0060632.1 MGP_C3HHeJ_G0026968.1 mouse_genomes_project 3 58504265 58508438 + Aadac protein_coding retained_intron MGP_C3HHeJ_T0013954.1 MGP_C3HHeJ_G0012058.1 mouse_genomes_project 3 68938328 68939055 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001178.1 MGP_C3HHeJ_G0001110.1 mouse_genomes_project 3 51391936 51392760 + TEC TEC MGP_C3HHeJ_T0098424.1 MGP_C3HHeJ_G0036629.1 mouse_genomes_project 3 102081297 102082373 + Gm42938 sense_intronic sense_intronic MGP_C3HHeJ_T0098417.1 MGP_C3HHeJ_G0036622.1 mouse_genomes_project 3 101114560 101117257 + Gm42868 sense_intronic sense_intronic MGP_C3HHeJ_T0001261.1 MGP_C3HHeJ_G0001193.1 mouse_genomes_project 3 119950286 119954417 + TEC TEC MGP_C3HHeJ_T0007465.1 MGP_C3HHeJ_G0006109.1 mouse_genomes_project 3 52224852 52243566 + Gm31026 lincRNA lincRNA MGP_C3HHeJ_T0007406.1 MGP_C3HHeJ_G0006064.1 mouse_genomes_project 3 31593061 31624306 - 4930431L21Rik lincRNA lincRNA MGP_C3HHeJ_T0007407.1 MGP_C3HHeJ_G0006064.1 mouse_genomes_project 3 31597222 31598202 - 4930431L21Rik lincRNA lincRNA MGP_C3HHeJ_T0013817.1 MGP_C3HHeJ_G0011921.1 mouse_genomes_project 3 24801920 24802189 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010446.1 MGP_C3HHeJ_G0008579.1 mouse_genomes_project 3 89869019 89869083 + Mir7012 miRNA miRNA MGP_C3HHeJ_T0059652.1 MGP_C3HHeJ_G0026760.1 mouse_genomes_project 3 2900298 2901790 + MGP_C3HHeJ_P0059652 Gm8797 protein_coding protein_coding MGP_C3HHeJ_T0001220.1 MGP_C3HHeJ_G0001152.1 mouse_genomes_project 3 84243621 84247495 + TEC TEC MGP_C3HHeJ_T0007602.1 MGP_C3HHeJ_G0006212.1 mouse_genomes_project 3 123847084 123858456 + Gm40190 lincRNA lincRNA MGP_C3HHeJ_T0014022.1 MGP_C3HHeJ_G0012126.1 mouse_genomes_project 3 93190906 93191361 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059886.1 MGP_C3HHeJ_G0026826.1 mouse_genomes_project 3 25387431 25419155 - MGP_C3HHeJ_P0059886 Tmem212 protein_coding protein_coding MGP_C3HHeJ_T0001290.1 MGP_C3HHeJ_G0001222.1 mouse_genomes_project 3 128380720 128382636 + TEC TEC MGP_C3HHeJ_T0060453.1 MGP_C3HHeJ_G0026927.1 mouse_genomes_project 3 52677441 52707351 + MGP_C3HHeJ_P0060453 Postn protein_coding protein_coding MGP_C3HHeJ_T0060454.1 MGP_C3HHeJ_G0026927.1 mouse_genomes_project 3 52677441 52707354 + MGP_C3HHeJ_P0060454 Postn protein_coding protein_coding MGP_C3HHeJ_T0060455.1 MGP_C3HHeJ_G0026927.1 mouse_genomes_project 3 52677457 52707351 + MGP_C3HHeJ_P0060455 Postn protein_coding protein_coding MGP_C3HHeJ_T0060456.1 MGP_C3HHeJ_G0026927.1 mouse_genomes_project 3 52677475 52706769 + MGP_C3HHeJ_P0060456 Postn protein_coding protein_coding MGP_C3HHeJ_T0060457.1 MGP_C3HHeJ_G0026927.1 mouse_genomes_project 3 52693881 52706964 + MGP_C3HHeJ_P0060457 Postn protein_coding protein_coding MGP_C3HHeJ_T0060458.1 MGP_C3HHeJ_G0026927.1 mouse_genomes_project 3 52694801 52701029 + Postn protein_coding retained_intron MGP_C3HHeJ_T0060459.1 MGP_C3HHeJ_G0026927.1 mouse_genomes_project 3 52699423 52706804 + Postn protein_coding retained_intron MGP_C3HHeJ_T0060460.1 MGP_C3HHeJ_G0026927.1 mouse_genomes_project 3 52699425 52706899 + Postn protein_coding retained_intron MGP_C3HHeJ_T0060461.1 MGP_C3HHeJ_G0026927.1 mouse_genomes_project 3 52705205 52706710 + Postn protein_coding retained_intron MGP_C3HHeJ_T0014172.1 MGP_C3HHeJ_G0012276.1 mouse_genomes_project 3 138263970 138265475 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060539.1 MGP_C3HHeJ_G0026942.1 mouse_genomes_project 3 54129044 54131536 + MGP_C3HHeJ_P0060539 Mab21l1 protein_coding protein_coding MGP_C3HHeJ_T0063212.1 MGP_C3HHeJ_G0027548.1 mouse_genomes_project 3 124669784 124709097 - MGP_C3HHeJ_P0063212 Synpo2 protein_coding protein_coding MGP_C3HHeJ_T0063213.1 MGP_C3HHeJ_G0027548.1 mouse_genomes_project 3 124669784 124831034 - MGP_C3HHeJ_P0063213 Synpo2 protein_coding protein_coding MGP_C3HHeJ_T0063214.1 MGP_C3HHeJ_G0027548.1 mouse_genomes_project 3 124669784 124830983 - MGP_C3HHeJ_P0063214 Synpo2 protein_coding protein_coding MGP_C3HHeJ_T0063215.1 MGP_C3HHeJ_G0027548.1 mouse_genomes_project 3 124702879 124831034 - MGP_C3HHeJ_P0063215 Synpo2 protein_coding protein_coding MGP_C3HHeJ_T0063216.1 MGP_C3HHeJ_G0027548.1 mouse_genomes_project 3 124704962 124709273 - MGP_C3HHeJ_P0063216 Synpo2 protein_coding protein_coding MGP_C3HHeJ_T0063217.1 MGP_C3HHeJ_G0027548.1 mouse_genomes_project 3 124707243 124710962 - MGP_C3HHeJ_P0063217 Synpo2 protein_coding protein_coding MGP_C3HHeJ_T0063218.1 MGP_C3HHeJ_G0027548.1 mouse_genomes_project 3 124771223 124831036 - Synpo2 protein_coding processed_transcript MGP_C3HHeJ_T0061263.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87979325 88002426 - MGP_C3HHeJ_P0061263 Sema4a protein_coding protein_coding MGP_C3HHeJ_T0061264.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87979328 87984506 - Sema4a protein_coding retained_intron MGP_C3HHeJ_T0061265.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87979328 87991997 - Sema4a protein_coding retained_intron MGP_C3HHeJ_T0061266.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87979328 87993406 - Sema4a protein_coding retained_intron MGP_C3HHeJ_T0061267.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87993052 87994818 - MGP_C3HHeJ_P0061267 Sema4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061268.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87993190 87995153 - Sema4a protein_coding retained_intron MGP_C3HHeJ_T0061269.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87993402 87998697 - MGP_C3HHeJ_P0061269 Sema4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061270.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87993464 88002484 - MGP_C3HHeJ_P0061270 Sema4a protein_coding protein_coding MGP_C3HHeJ_T0061271.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87993935 88002413 - MGP_C3HHeJ_P0061271 Sema4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061272.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87993952 88002259 - MGP_C3HHeJ_P0061272 Sema4a protein_coding protein_coding MGP_C3HHeJ_T0061273.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87995410 87998688 - MGP_C3HHeJ_P0061273 Sema4a protein_coding protein_coding MGP_C3HHeJ_T0061274.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87996201 87998225 - Sema4a protein_coding retained_intron MGP_C3HHeJ_T0061275.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87996459 87999798 - MGP_C3HHeJ_P0061275 Sema4a protein_coding protein_coding MGP_C3HHeJ_T0061276.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87998147 87999819 - MGP_C3HHeJ_P0061276 Sema4a protein_coding protein_coding MGP_C3HHeJ_T0061277.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87999107 87999819 - Sema4a protein_coding processed_transcript MGP_C3HHeJ_T0100523.1 MGP_C3HHeJ_G0038717.1 mouse_genomes_project 3 14505761 14505900 - Gm24963 snoRNA snoRNA MGP_C3HHeJ_T0001111.1 MGP_C3HHeJ_G0001045.1 mouse_genomes_project 3 32407955 32408586 - TEC TEC MGP_C3HHeJ_T0099243.1 MGP_C3HHeJ_G0037437.1 mouse_genomes_project 3 37561497 37561657 + Gm23796 snRNA snRNA MGP_C3HHeJ_T0063335.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129480834 129515217 - MGP_C3HHeJ_P0063335 Ap1ar protein_coding protein_coding MGP_C3HHeJ_T0063336.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129480839 129515205 - MGP_C3HHeJ_P0063336 Ap1ar protein_coding protein_coding MGP_C3HHeJ_T0063337.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129481093 129482742 - Ap1ar protein_coding retained_intron MGP_C3HHeJ_T0063338.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129486261 129486896 - Ap1ar protein_coding retained_intron MGP_C3HHeJ_T0063339.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129487444 129492871 - Ap1ar protein_coding retained_intron MGP_C3HHeJ_T0063340.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129490897 129492560 - Ap1ar protein_coding retained_intron MGP_C3HHeJ_T0063341.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129494924 129503709 - Ap1ar protein_coding retained_intron MGP_C3HHeJ_T0063342.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129495976 129514925 - Ap1ar protein_coding retained_intron MGP_C3HHeJ_T0063343.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129495977 129500350 - Ap1ar protein_coding retained_intron MGP_C3HHeJ_T0063344.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129496012 129514950 - MGP_C3HHeJ_P0063344 Ap1ar protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061926.1 MGP_C3HHeJ_G0027267.1 mouse_genomes_project 3 95120237 95153509 + MGP_C3HHeJ_P0061926 Pi4kb protein_coding protein_coding MGP_C3HHeJ_T0061927.1 MGP_C3HHeJ_G0027267.1 mouse_genomes_project 3 95120337 95152827 + MGP_C3HHeJ_P0061927 Pi4kb protein_coding protein_coding MGP_C3HHeJ_T0061928.1 MGP_C3HHeJ_G0027267.1 mouse_genomes_project 3 95120382 95152823 + MGP_C3HHeJ_P0061928 Pi4kb protein_coding protein_coding MGP_C3HHeJ_T0061929.1 MGP_C3HHeJ_G0027267.1 mouse_genomes_project 3 95121622 95153447 + MGP_C3HHeJ_P0061929 Pi4kb protein_coding protein_coding MGP_C3HHeJ_T0061930.1 MGP_C3HHeJ_G0027267.1 mouse_genomes_project 3 95121649 95141885 + MGP_C3HHeJ_P0061930 Pi4kb protein_coding protein_coding MGP_C3HHeJ_T0061931.1 MGP_C3HHeJ_G0027267.1 mouse_genomes_project 3 95144869 95152856 + MGP_C3HHeJ_P0061931 Pi4kb protein_coding protein_coding MGP_C3HHeJ_T0061932.1 MGP_C3HHeJ_G0027267.1 mouse_genomes_project 3 95150990 95152924 + Pi4kb protein_coding processed_transcript MGP_C3HHeJ_T0101404.1 MGP_C3HHeJ_G0039443.1 mouse_genomes_project 3 29255732 29329116 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101405.1 MGP_C3HHeJ_G0039443.1 mouse_genomes_project 3 29309980 29338038 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101406.1 MGP_C3HHeJ_G0039443.1 mouse_genomes_project 3 29321770 29338038 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0001264.1 MGP_C3HHeJ_G0001196.1 mouse_genomes_project 3 121197809 121200491 - TEC TEC MGP_C3HHeJ_T0062211.1 MGP_C3HHeJ_G0027325.1 mouse_genomes_project 3 96863363 96868536 - MGP_C3HHeJ_P0062211 Polr3gl protein_coding protein_coding MGP_C3HHeJ_T0062212.1 MGP_C3HHeJ_G0027325.1 mouse_genomes_project 3 96863896 96867178 - Polr3gl protein_coding retained_intron MGP_C3HHeJ_T0062213.1 MGP_C3HHeJ_G0027325.1 mouse_genomes_project 3 96863904 96865659 - Polr3gl protein_coding retained_intron MGP_C3HHeJ_T0062553.1 MGP_C3HHeJ_G0027404.1 mouse_genomes_project 3 104658138 104714933 + MGP_C3HHeJ_P0062553 Ptpn22 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062554.1 MGP_C3HHeJ_G0027404.1 mouse_genomes_project 3 104658276 104714946 + MGP_C3HHeJ_P0062554 Ptpn22 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062555.1 MGP_C3HHeJ_G0027404.1 mouse_genomes_project 3 104658898 104677606 + Ptpn22 protein_coding processed_transcript MGP_C3HHeJ_T0062556.1 MGP_C3HHeJ_G0027404.1 mouse_genomes_project 3 104678909 104680792 + Ptpn22 protein_coding retained_intron MGP_C3HHeJ_T0062557.1 MGP_C3HHeJ_G0027404.1 mouse_genomes_project 3 104687124 104689322 + Ptpn22 protein_coding retained_intron MGP_C3HHeJ_T0062558.1 MGP_C3HHeJ_G0027404.1 mouse_genomes_project 3 104687214 104705065 + Ptpn22 protein_coding processed_transcript MGP_C3HHeJ_T0062559.1 MGP_C3HHeJ_G0027404.1 mouse_genomes_project 3 104689773 104712147 + Ptpn22 protein_coding retained_intron MGP_C3HHeJ_T0062560.1 MGP_C3HHeJ_G0027404.1 mouse_genomes_project 3 104703717 104714935 + Ptpn22 protein_coding retained_intron MGP_C3HHeJ_T0007683.1 MGP_C3HHeJ_G0006280.1 mouse_genomes_project 3 151751677 151793348 + Gm42649 lincRNA lincRNA MGP_C3HHeJ_T0014143.1 MGP_C3HHeJ_G0012247.1 mouse_genomes_project 3 131038954 131039718 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100567.1 MGP_C3HHeJ_G0038761.1 mouse_genomes_project 3 104166314 104166416 + Gm25009 snoRNA snoRNA MGP_C3HHeJ_T0062808.1 MGP_C3HHeJ_G0027467.1 mouse_genomes_project 3 109077901 109086871 + MGP_C3HHeJ_P0062808 Gnat2 protein_coding protein_coding MGP_C3HHeJ_T0062809.1 MGP_C3HHeJ_G0027467.1 mouse_genomes_project 3 109077992 109081827 + MGP_C3HHeJ_P0062809 Gnat2 protein_coding protein_coding MGP_C3HHeJ_T0062810.1 MGP_C3HHeJ_G0027467.1 mouse_genomes_project 3 109078250 109083856 + MGP_C3HHeJ_P0062810 Gnat2 protein_coding protein_coding MGP_C3HHeJ_T0062811.1 MGP_C3HHeJ_G0027467.1 mouse_genomes_project 3 109078304 109086869 + Gnat2 protein_coding retained_intron MGP_C3HHeJ_T0062812.1 MGP_C3HHeJ_G0027467.1 mouse_genomes_project 3 109079560 109083871 + MGP_C3HHeJ_P0062812 Gnat2 protein_coding protein_coding MGP_C3HHeJ_T0062813.1 MGP_C3HHeJ_G0027467.1 mouse_genomes_project 3 109082681 109086730 + Gnat2 protein_coding processed_transcript MGP_C3HHeJ_T0007536.1 MGP_C3HHeJ_G0006158.1 mouse_genomes_project 3 93192359 93360135 - lincRNA lincRNA MGP_C3HHeJ_T0001105.1 MGP_C3HHeJ_G0001039.1 mouse_genomes_project 3 30778828 30781266 - TEC TEC MGP_C3HHeJ_T0060474.1 MGP_C3HHeJ_G0026929.1 mouse_genomes_project 3 53039573 53040750 - MGP_C3HHeJ_P0060474 Gm21958 protein_coding protein_coding MGP_C3HHeJ_T0013984.1 MGP_C3HHeJ_G0012088.1 mouse_genomes_project 3 79298802 79299882 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014146.1 MGP_C3HHeJ_G0012250.1 mouse_genomes_project 3 131938707 131939300 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100535.1 MGP_C3HHeJ_G0038729.1 mouse_genomes_project 3 47683739 47683867 + Gm22480 snoRNA snoRNA MGP_C3HHeJ_T0013772.1 MGP_C3HHeJ_G0011876.1 mouse_genomes_project 3 10229402 10230366 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060354.1 MGP_C3HHeJ_G0026906.1 mouse_genomes_project 3 47944675 47958634 - MGP_C3HHeJ_P0060354 Pcdh18 protein_coding protein_coding MGP_C3HHeJ_T0060355.1 MGP_C3HHeJ_G0026906.1 mouse_genomes_project 3 47944677 47958603 - MGP_C3HHeJ_P0060355 Pcdh18 protein_coding protein_coding MGP_C3HHeJ_T0060356.1 MGP_C3HHeJ_G0026906.1 mouse_genomes_project 3 47946657 47958643 - Pcdh18 protein_coding processed_transcript MGP_C3HHeJ_T0060357.1 MGP_C3HHeJ_G0026906.1 mouse_genomes_project 3 47953734 47956783 - MGP_C3HHeJ_P0060357 Pcdh18 protein_coding protein_coding MGP_C3HHeJ_T0060358.1 MGP_C3HHeJ_G0026906.1 mouse_genomes_project 3 47956144 47958601 - Pcdh18 protein_coding processed_transcript MGP_C3HHeJ_T0101951.1 MGP_C3HHeJ_G0039916.1 mouse_genomes_project 3 78260090 78260620 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0059668.1 MGP_C3HHeJ_G0026766.1 mouse_genomes_project 3 5882413 5888416 - MGP_C3HHeJ_P0059668 Hey1 protein_coding protein_coding MGP_C3HHeJ_T0059669.1 MGP_C3HHeJ_G0026766.1 mouse_genomes_project 3 5883753 5888144 - Hey1 protein_coding retained_intron MGP_C3HHeJ_T0059670.1 MGP_C3HHeJ_G0026766.1 mouse_genomes_project 3 5883850 5887785 - Hey1 protein_coding retained_intron MGP_C3HHeJ_T0059671.1 MGP_C3HHeJ_G0026766.1 mouse_genomes_project 3 5884596 5888124 - Hey1 protein_coding retained_intron MGP_C3HHeJ_T0013904.1 MGP_C3HHeJ_G0012008.1 mouse_genomes_project 3 56098804 56099281 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013783.1 MGP_C3HHeJ_G0011887.1 mouse_genomes_project 3 12219255 12219474 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061533.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88966919 88980074 + MGP_C3HHeJ_P0061533 protein_coding protein_coding MGP_C3HHeJ_T0061534.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88967027 88976200 + MGP_C3HHeJ_P0061534 protein_coding protein_coding MGP_C3HHeJ_T0061535.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88967027 88980153 + MGP_C3HHeJ_P0061535 protein_coding protein_coding MGP_C3HHeJ_T0061536.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88967047 88972559 + MGP_C3HHeJ_P0061536 protein_coding protein_coding MGP_C3HHeJ_T0061537.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88967070 88976356 + MGP_C3HHeJ_P0061537 protein_coding protein_coding MGP_C3HHeJ_T0061538.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88967090 88980074 + MGP_C3HHeJ_P0061538 protein_coding protein_coding MGP_C3HHeJ_T0061539.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88967167 88980147 + MGP_C3HHeJ_P0061539 protein_coding unknown_likely_coding MGP_C3HHeJ_T0061540.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88968947 88972358 + protein_coding retained_intron MGP_C3HHeJ_T0061541.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88969942 88978764 + MGP_C3HHeJ_P0061541 protein_coding protein_coding MGP_C3HHeJ_T0061542.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88969956 88976356 + MGP_C3HHeJ_P0061542 protein_coding protein_coding MGP_C3HHeJ_T0061543.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88972840 88977012 + protein_coding processed_transcript MGP_C3HHeJ_T0014000.1 MGP_C3HHeJ_G0012104.1 mouse_genomes_project 3 86495228 86495537 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063609.1 MGP_C3HHeJ_G0027617.1 mouse_genomes_project 3 139859054 139909319 + MGP_C3HHeJ_P0063609 Dnajb14 protein_coding protein_coding MGP_C3HHeJ_T0063610.1 MGP_C3HHeJ_G0027617.1 mouse_genomes_project 3 139859266 139889276 + Dnajb14 protein_coding retained_intron MGP_C3HHeJ_T0063611.1 MGP_C3HHeJ_G0027617.1 mouse_genomes_project 3 139859560 139895525 + MGP_C3HHeJ_P0063611 Dnajb14 protein_coding protein_coding MGP_C3HHeJ_T0063612.1 MGP_C3HHeJ_G0027617.1 mouse_genomes_project 3 139898493 139902160 + Dnajb14 protein_coding retained_intron MGP_C3HHeJ_T0063500.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135270893 135352556 - MGP_C3HHeJ_P0063500 Tet2 protein_coding protein_coding MGP_C3HHeJ_T0063501.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135270897 135282102 - Tet2 protein_coding retained_intron MGP_C3HHeJ_T0063502.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135271053 135352534 - MGP_C3HHeJ_P0063502 Tet2 protein_coding protein_coding MGP_C3HHeJ_T0063503.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135273060 135279031 - Tet2 protein_coding retained_intron MGP_C3HHeJ_T0063504.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135274740 135283857 - MGP_C3HHeJ_P0063504 Tet2 protein_coding protein_coding MGP_C3HHeJ_T0063505.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135282361 135286213 - Tet2 protein_coding retained_intron MGP_C3HHeJ_T0063506.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135286342 135287969 - Tet2 protein_coding retained_intron MGP_C3HHeJ_T0063507.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135295805 135353305 - MGP_C3HHeJ_P0063507 Tet2 protein_coding protein_coding MGP_C3HHeJ_T0063508.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135322769 135352468 - Tet2 protein_coding retained_intron MGP_C3HHeJ_T0063509.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135346881 135352452 - Tet2 protein_coding processed_transcript MGP_C3HHeJ_T0013757.1 MGP_C3HHeJ_G0011861.1 mouse_genomes_project 3 6123965 6124298 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063034.1 MGP_C3HHeJ_G0027515.1 mouse_genomes_project 3 117888704 117915135 + MGP_C3HHeJ_P0063034 Sass6 protein_coding protein_coding MGP_C3HHeJ_T0063035.1 MGP_C3HHeJ_G0027515.1 mouse_genomes_project 3 117888725 117899051 + Sass6 protein_coding processed_transcript MGP_C3HHeJ_T0063036.1 MGP_C3HHeJ_G0027515.1 mouse_genomes_project 3 117888734 117924420 + MGP_C3HHeJ_P0063036 Sass6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063037.1 MGP_C3HHeJ_G0027515.1 mouse_genomes_project 3 117888798 117922216 + MGP_C3HHeJ_P0063037 Sass6 protein_coding protein_coding MGP_C3HHeJ_T0063039.1 MGP_C3HHeJ_G0027515.1 mouse_genomes_project 3 117906848 117912760 + Sass6 protein_coding processed_transcript MGP_C3HHeJ_T0063041.1 MGP_C3HHeJ_G0027515.1 mouse_genomes_project 3 117914991 117920968 + Sass6 protein_coding retained_intron MGP_C3HHeJ_T0063042.1 MGP_C3HHeJ_G0027515.1 mouse_genomes_project 3 117919350 117922534 + Sass6 protein_coding retained_intron MGP_C3HHeJ_T0001289.1 MGP_C3HHeJ_G0001221.1 mouse_genomes_project 3 128372064 128375667 + TEC TEC MGP_C3HHeJ_T0014187.1 MGP_C3HHeJ_G0012291.1 mouse_genomes_project 3 142571471 142572021 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001231.1 MGP_C3HHeJ_G0001163.1 mouse_genomes_project 3 95860449 95862189 + TEC TEC MGP_C3HHeJ_T0061087.1 MGP_C3HHeJ_G0027075.1 mouse_genomes_project 3 86514765 86613273 - MGP_C3HHeJ_P0061087 Kirrel protein_coding protein_coding MGP_C3HHeJ_T0061088.1 MGP_C3HHeJ_G0027075.1 mouse_genomes_project 3 86514773 86613320 - MGP_C3HHeJ_P0061088 Kirrel protein_coding protein_coding MGP_C3HHeJ_T0061089.1 MGP_C3HHeJ_G0027075.1 mouse_genomes_project 3 86520800 86613123 - MGP_C3HHeJ_P0061089 Kirrel protein_coding protein_coding MGP_C3HHeJ_T0001233.1 MGP_C3HHeJ_G0001165.1 mouse_genomes_project 3 96517741 96519355 + TEC TEC MGP_C3HHeJ_T0001137.1 MGP_C3HHeJ_G0001071.1 mouse_genomes_project 3 43228362 43230878 - TEC TEC MGP_C3HHeJ_T0001339.1 MGP_C3HHeJ_G0001270.1 mouse_genomes_project 3 150994663 150995203 + TEC TEC MGP_C3HHeJ_T0059757.1 MGP_C3HHeJ_G0026797.1 mouse_genomes_project 3 13171722 13271361 - MGP_C3HHeJ_P0059757 Gm5150 protein_coding protein_coding MGP_C3HHeJ_T0059758.1 MGP_C3HHeJ_G0026797.1 mouse_genomes_project 3 13172921 13271256 - MGP_C3HHeJ_P0059758 Gm5150 protein_coding protein_coding MGP_C3HHeJ_T0060218.1 MGP_C3HHeJ_G0026884.1 mouse_genomes_project 3 35160302 35169203 + MGP_C3HHeJ_P0060218 Bbs12 protein_coding protein_coding MGP_C3HHeJ_T0060219.1 MGP_C3HHeJ_G0026884.1 mouse_genomes_project 3 35160304 35169206 + MGP_C3HHeJ_P0060219 Bbs12 protein_coding protein_coding MGP_C3HHeJ_T0062674.1 MGP_C3HHeJ_G0027432.1 mouse_genomes_project 3 107038175 107141370 - MGP_C3HHeJ_P0062674 Chil3 protein_coding protein_coding MGP_C3HHeJ_T0062675.1 MGP_C3HHeJ_G0027432.1 mouse_genomes_project 3 107039218 107059804 - MGP_C3HHeJ_P0062675 Chil3 protein_coding protein_coding MGP_C3HHeJ_T0062676.1 MGP_C3HHeJ_G0027432.1 mouse_genomes_project 3 107065732 107070199 - Chil3 protein_coding retained_intron MGP_C3HHeJ_T0007493.1 MGP_C3HHeJ_G0006130.1 mouse_genomes_project 3 74876882 74907541 + lincRNA lincRNA MGP_C3HHeJ_T0063554.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137382714 137488243 + MGP_C3HHeJ_P0063554 Manba protein_coding protein_coding MGP_C3HHeJ_T0063555.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137382714 137471295 + MGP_C3HHeJ_P0063555 Manba protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063556.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137382722 137471256 + Manba protein_coding retained_intron MGP_C3HHeJ_T0063557.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137382728 137424749 + Manba protein_coding retained_intron MGP_C3HHeJ_T0063558.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137429068 137455568 + Manba protein_coding processed_transcript MGP_C3HHeJ_T0063559.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137434863 137436488 + Manba protein_coding processed_transcript MGP_C3HHeJ_T0063560.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137457896 137465535 + Manba protein_coding retained_intron MGP_C3HHeJ_T0063561.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137463100 137470498 + Manba protein_coding processed_transcript MGP_C3HHeJ_T0063562.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137464939 137472490 + Manba protein_coding processed_transcript MGP_C3HHeJ_T0063563.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137465010 137478959 + Manba protein_coding processed_transcript MGP_C3HHeJ_T0063564.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137478919 137484392 + Manba protein_coding processed_transcript MGP_C3HHeJ_T0001187.1 MGP_C3HHeJ_G0001119.1 mouse_genomes_project 3 54477671 54480693 - TEC TEC MGP_C3HHeJ_T0001262.1 MGP_C3HHeJ_G0001194.1 mouse_genomes_project 3 119956424 119959935 + TEC TEC MGP_C3HHeJ_T0001196.1 MGP_C3HHeJ_G0001128.1 mouse_genomes_project 3 59039121 59043117 + TEC TEC MGP_C3HHeJ_T0060720.1 MGP_C3HHeJ_G0026990.1 mouse_genomes_project 3 64484150 64504002 + MGP_C3HHeJ_P0060720 Lekr1 protein_coding protein_coding MGP_C3HHeJ_T0060721.1 MGP_C3HHeJ_G0026990.1 mouse_genomes_project 3 64484157 64502047 + Lekr1 protein_coding processed_transcript MGP_C3HHeJ_T0060722.1 MGP_C3HHeJ_G0026990.1 mouse_genomes_project 3 64484168 64558388 + Lekr1 protein_coding processed_transcript MGP_C3HHeJ_T0060723.1 MGP_C3HHeJ_G0026990.1 mouse_genomes_project 3 64484190 64486359 + Lekr1 protein_coding retained_intron MGP_C3HHeJ_T0060724.1 MGP_C3HHeJ_G0026990.1 mouse_genomes_project 3 64484204 64591998 + Lekr1 protein_coding processed_transcript MGP_C3HHeJ_T0060725.1 MGP_C3HHeJ_G0026990.1 mouse_genomes_project 3 64484239 64547233 + Lekr1 protein_coding processed_transcript MGP_C3HHeJ_T0060726.1 MGP_C3HHeJ_G0026990.1 mouse_genomes_project 3 64501875 64651064 + Lekr1 protein_coding processed_transcript MGP_C3HHeJ_T0060794.1 MGP_C3HHeJ_G0027006.1 mouse_genomes_project 3 67722055 67724633 + MGP_C3HHeJ_P0060794 1110032F04Rik protein_coding protein_coding MGP_C3HHeJ_T0004188.1 MGP_C3HHeJ_G0003680.1 mouse_genomes_project 3 79070541 79097986 - Gm36569 antisense antisense MGP_C3HHeJ_T0098442.1 MGP_C3HHeJ_G0036647.1 mouse_genomes_project 3 104962932 104964589 - Gm42701 sense_intronic sense_intronic MGP_C3HHeJ_T0014009.1 MGP_C3HHeJ_G0012113.1 mouse_genomes_project 3 90347326 90348229 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060256.1 MGP_C3HHeJ_G0026892.1 mouse_genomes_project 3 38446825 38471720 + MGP_C3HHeJ_P0060256 Intu protein_coding protein_coding MGP_C3HHeJ_T0060257.1 MGP_C3HHeJ_G0026892.1 mouse_genomes_project 3 38456304 38525206 + MGP_C3HHeJ_P0060257 Intu protein_coding protein_coding MGP_C3HHeJ_T0060258.1 MGP_C3HHeJ_G0026892.1 mouse_genomes_project 3 38493461 38513342 + MGP_C3HHeJ_P0060258 Intu protein_coding protein_coding MGP_C3HHeJ_T0014079.1 MGP_C3HHeJ_G0012183.1 mouse_genomes_project 3 108893339 108893487 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007435.1 MGP_C3HHeJ_G0006088.1 mouse_genomes_project 3 38418443 38437626 - 1700017G19Rik lincRNA lincRNA MGP_C3HHeJ_T0007436.1 MGP_C3HHeJ_G0006088.1 mouse_genomes_project 3 38422006 38423353 - 1700017G19Rik lincRNA lincRNA MGP_C3HHeJ_T0004247.1 MGP_C3HHeJ_G0003720.1 mouse_genomes_project 3 104566799 104569267 + Gm15886 antisense antisense MGP_C3HHeJ_T0004248.1 MGP_C3HHeJ_G0003720.1 mouse_genomes_project 3 104566820 104584338 + Gm15886 antisense antisense MGP_C3HHeJ_T0004249.1 MGP_C3HHeJ_G0003720.1 mouse_genomes_project 3 104567155 104572615 + Gm15886 antisense antisense MGP_C3HHeJ_T0004250.1 MGP_C3HHeJ_G0003720.1 mouse_genomes_project 3 104572033 104573026 + Gm15886 antisense antisense MGP_C3HHeJ_T0010445.1 MGP_C3HHeJ_G0008578.1 mouse_genomes_project 3 89652604 89652684 + Mir190b miRNA miRNA MGP_C3HHeJ_T0007513.1 MGP_C3HHeJ_G0006147.1 mouse_genomes_project 3 84939802 84948878 - Gm42812 lincRNA lincRNA MGP_C3HHeJ_T0001130.1 MGP_C3HHeJ_G0001064.1 mouse_genomes_project 3 38896923 38897846 - TEC TEC MGP_C3HHeJ_T0099314.1 MGP_C3HHeJ_G0037508.1 mouse_genomes_project 3 144887683 144887788 - Gm24457 snRNA snRNA MGP_C3HHeJ_T0062782.1 MGP_C3HHeJ_G0027461.1 mouse_genomes_project 3 108915037 108920112 - MGP_C3HHeJ_P0062782 protein_coding protein_coding MGP_C3HHeJ_T0062783.1 MGP_C3HHeJ_G0027461.1 mouse_genomes_project 3 108915038 108920097 - MGP_C3HHeJ_P0062783 protein_coding protein_coding MGP_C3HHeJ_T0062784.1 MGP_C3HHeJ_G0027461.1 mouse_genomes_project 3 108915152 108919725 - MGP_C3HHeJ_P0062784 protein_coding protein_coding MGP_C3HHeJ_T0062785.1 MGP_C3HHeJ_G0027461.1 mouse_genomes_project 3 108915296 108919746 - MGP_C3HHeJ_P0062785 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062786.1 MGP_C3HHeJ_G0027461.1 mouse_genomes_project 3 108917184 108919776 - MGP_C3HHeJ_P0062786 protein_coding protein_coding MGP_C3HHeJ_T0062787.1 MGP_C3HHeJ_G0027461.1 mouse_genomes_project 3 108918008 108920078 - protein_coding processed_transcript MGP_C3HHeJ_T0007676.1 MGP_C3HHeJ_G0006275.1 mouse_genomes_project 3 149769633 149780806 + Gm36831 lincRNA lincRNA MGP_C3HHeJ_T0013880.1 MGP_C3HHeJ_G0011984.1 mouse_genomes_project 3 47985093 47985556 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013802.1 MGP_C3HHeJ_G0011906.1 mouse_genomes_project 3 18133925 18134135 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004285.1 MGP_C3HHeJ_G0003739.1 mouse_genomes_project 3 123936176 123952692 - Gm42835 antisense antisense MGP_C3HHeJ_T0062658.1 MGP_C3HHeJ_G0027427.1 mouse_genomes_project 3 106836622 106843208 + Wdr77 protein_coding retained_intron MGP_C3HHeJ_T0062659.1 MGP_C3HHeJ_G0027427.1 mouse_genomes_project 3 106836628 106847152 + MGP_C3HHeJ_P0062659 Wdr77 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062660.1 MGP_C3HHeJ_G0027427.1 mouse_genomes_project 3 106836698 106844438 + MGP_C3HHeJ_P0062660 Wdr77 protein_coding protein_coding MGP_C3HHeJ_T0062661.1 MGP_C3HHeJ_G0027427.1 mouse_genomes_project 3 106841564 106842667 + Wdr77 protein_coding retained_intron MGP_C3HHeJ_T0060593.1 MGP_C3HHeJ_G0026956.1 mouse_genomes_project 3 57279366 57315394 - MGP_C3HHeJ_P0060593 Clrn1 protein_coding protein_coding MGP_C3HHeJ_T0060594.1 MGP_C3HHeJ_G0026956.1 mouse_genomes_project 3 57280553 57315394 - MGP_C3HHeJ_P0060594 Clrn1 protein_coding protein_coding MGP_C3HHeJ_T0060595.1 MGP_C3HHeJ_G0026956.1 mouse_genomes_project 3 57281319 57315522 - MGP_C3HHeJ_P0060595 Clrn1 protein_coding protein_coding MGP_C3HHeJ_T0060596.1 MGP_C3HHeJ_G0026956.1 mouse_genomes_project 3 57281701 57295018 - Clrn1 protein_coding retained_intron MGP_C3HHeJ_T0061399.1 MGP_C3HHeJ_G0027132.1 mouse_genomes_project 3 88677999 88694075 - MGP_C3HHeJ_P0061399 Hcn3 protein_coding protein_coding MGP_C3HHeJ_T0061400.1 MGP_C3HHeJ_G0027132.1 mouse_genomes_project 3 88682932 88685434 - Hcn3 protein_coding retained_intron MGP_C3HHeJ_T0061401.1 MGP_C3HHeJ_G0027132.1 mouse_genomes_project 3 88683049 88685416 - Hcn3 protein_coding retained_intron MGP_C3HHeJ_T0061402.1 MGP_C3HHeJ_G0027132.1 mouse_genomes_project 3 88685682 88693859 - Hcn3 protein_coding processed_transcript MGP_C3HHeJ_T0062389.1 MGP_C3HHeJ_G0027370.1 mouse_genomes_project 3 101455278 101535767 + MGP_C3HHeJ_P0062389 Vtcn1 protein_coding protein_coding MGP_C3HHeJ_T0063194.1 MGP_C3HHeJ_G0027543.1 mouse_genomes_project 3 124481433 124485867 + MGP_C3HHeJ_P0063194 Fabp2 protein_coding protein_coding MGP_C3HHeJ_T0001313.1 MGP_C3HHeJ_G0001244.1 mouse_genomes_project 3 132399822 132402639 + TEC TEC MGP_C3HHeJ_T0001361.1 MGP_C3HHeJ_G0001292.1 mouse_genomes_project 3 159981258 159982457 - TEC TEC MGP_C3HHeJ_T0098289.1 MGP_C3HHeJ_G0036501.1 mouse_genomes_project 3 88245281 88245408 + Gm25820 scaRNA scaRNA MGP_C3HHeJ_T0013801.1 MGP_C3HHeJ_G0011905.1 mouse_genomes_project 3 17733204 17734177 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062534.1 MGP_C3HHeJ_G0027400.1 mouse_genomes_project 3 104596891 104604921 - MGP_C3HHeJ_P0062534 Dclre1b protein_coding protein_coding MGP_C3HHeJ_T0062535.1 MGP_C3HHeJ_G0027400.1 mouse_genomes_project 3 104598703 104605158 - Dclre1b protein_coding retained_intron MGP_C3HHeJ_T0062536.1 MGP_C3HHeJ_G0027400.1 mouse_genomes_project 3 104598721 104604013 - MGP_C3HHeJ_P0062536 Dclre1b protein_coding protein_coding MGP_C3HHeJ_T0062537.1 MGP_C3HHeJ_G0027400.1 mouse_genomes_project 3 104599417 104603470 - Dclre1b protein_coding retained_intron MGP_C3HHeJ_T0062538.1 MGP_C3HHeJ_G0027400.1 mouse_genomes_project 3 104599845 104605025 - MGP_C3HHeJ_P0062538 Dclre1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062539.1 MGP_C3HHeJ_G0027400.1 mouse_genomes_project 3 104601751 104605222 - MGP_C3HHeJ_P0062539 Dclre1b protein_coding protein_coding MGP_C3HHeJ_T0061789.1 MGP_C3HHeJ_G0027216.1 mouse_genomes_project 3 92392560 92394576 - MGP_C3HHeJ_P0061789 2310046K23Rik protein_coding protein_coding MGP_C3HHeJ_T0013882.1 MGP_C3HHeJ_G0011986.1 mouse_genomes_project 3 48373598 48373830 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101188.1 MGP_C3HHeJ_G0039333.1 mouse_genomes_project 3 64321393 64341985 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101189.1 MGP_C3HHeJ_G0039333.1 mouse_genomes_project 3 64322827 64323301 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101190.1 MGP_C3HHeJ_G0039333.1 mouse_genomes_project 3 64329461 64343180 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101191.1 MGP_C3HHeJ_G0039333.1 mouse_genomes_project 3 64341289 64343022 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101192.1 MGP_C3HHeJ_G0039333.1 mouse_genomes_project 3 64341323 64343188 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0004190.1 MGP_C3HHeJ_G0003682.1 mouse_genomes_project 3 80291691 80294730 - Gm16000 antisense antisense MGP_C3HHeJ_T0007408.1 MGP_C3HHeJ_G0006065.1 mouse_genomes_project 3 31746660 31748835 - Gm43077 lincRNA lincRNA MGP_C3HHeJ_T0004277.1 MGP_C3HHeJ_G0003733.1 mouse_genomes_project 3 111318319 111322011 + C130013H08Rik antisense antisense MGP_C3HHeJ_T0010432.1 MGP_C3HHeJ_G0008565.1 mouse_genomes_project 3 64477208 64477347 + Mir8120 miRNA miRNA MGP_C3HHeJ_T0060517.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53587106 53891708 + MGP_C3HHeJ_P0060517 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060518.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53587268 53823308 + MGP_C3HHeJ_P0060518 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060519.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53587268 53891704 + MGP_C3HHeJ_P0060519 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060520.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53591813 53602296 + MGP_C3HHeJ_P0060520 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060521.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53592021 53602266 + Dclk1 protein_coding retained_intron MGP_C3HHeJ_T0060522.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53699617 53829923 + Dclk1 protein_coding processed_transcript MGP_C3HHeJ_T0060523.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53802168 53832556 + Dclk1 protein_coding retained_intron MGP_C3HHeJ_T0060524.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53812914 53823310 + MGP_C3HHeJ_P0060524 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060525.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53812944 53891704 + MGP_C3HHeJ_P0060525 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060526.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53813085 53889192 + MGP_C3HHeJ_P0060526 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060527.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53813102 53887775 + MGP_C3HHeJ_P0060527 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060528.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53813102 53869840 + MGP_C3HHeJ_P0060528 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060529.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53813102 53889191 + MGP_C3HHeJ_P0060529 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060530.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53813158 53874922 + MGP_C3HHeJ_P0060530 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060532.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53880518 53886952 + Dclk1 protein_coding processed_transcript MGP_C3HHeJ_T0001348.1 MGP_C3HHeJ_G0001279.1 mouse_genomes_project 3 154979964 154983019 - TEC TEC MGP_C3HHeJ_T0007636.1 MGP_C3HHeJ_G0006241.1 mouse_genomes_project 3 138921020 138923323 - Gm43356 lincRNA lincRNA MGP_C3HHeJ_T0014102.1 MGP_C3HHeJ_G0012206.1 mouse_genomes_project 3 115064014 115065666 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001190.1 MGP_C3HHeJ_G0001122.1 mouse_genomes_project 3 56029039 56030215 - TEC TEC MGP_C3HHeJ_T0013876.1 MGP_C3HHeJ_G0011980.1 mouse_genomes_project 3 47379209 47379565 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007424.1 MGP_C3HHeJ_G0006080.1 mouse_genomes_project 3 35465385 35466752 + 4930594O21Rik lincRNA lincRNA MGP_C3HHeJ_T0007425.1 MGP_C3HHeJ_G0006080.1 mouse_genomes_project 3 35465395 35466302 + 4930594O21Rik lincRNA lincRNA MGP_C3HHeJ_T0014208.1 MGP_C3HHeJ_G0012312.1 mouse_genomes_project 3 154546289 154546767 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061834.1 MGP_C3HHeJ_G0027250.1 mouse_genomes_project 3 94372736 94395084 + MGP_C3HHeJ_P0061834 Them4 protein_coding protein_coding MGP_C3HHeJ_T0061835.1 MGP_C3HHeJ_G0027250.1 mouse_genomes_project 3 94372777 94380814 + Them4 protein_coding retained_intron MGP_C3HHeJ_T0061836.1 MGP_C3HHeJ_G0027250.1 mouse_genomes_project 3 94372783 94388683 + Them4 protein_coding retained_intron MGP_C3HHeJ_T0013777.1 MGP_C3HHeJ_G0011881.1 mouse_genomes_project 3 11230070 11231427 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064181.1 MGP_C3HHeJ_G0027720.1 mouse_genomes_project 3 162615906 162711592 + MGP_C3HHeJ_P0064181 Wls protein_coding protein_coding MGP_C3HHeJ_T0064182.1 MGP_C3HHeJ_G0027720.1 mouse_genomes_project 3 162615971 162714237 + MGP_C3HHeJ_P0064182 Wls protein_coding protein_coding MGP_C3HHeJ_T0064183.1 MGP_C3HHeJ_G0027720.1 mouse_genomes_project 3 162615973 162689134 + Wls protein_coding retained_intron MGP_C3HHeJ_T0064184.1 MGP_C3HHeJ_G0027720.1 mouse_genomes_project 3 162615973 162690109 + Wls protein_coding retained_intron MGP_C3HHeJ_T0064185.1 MGP_C3HHeJ_G0027720.1 mouse_genomes_project 3 162615973 162710472 + MGP_C3HHeJ_P0064185 Wls protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064186.1 MGP_C3HHeJ_G0027720.1 mouse_genomes_project 3 162616144 162650697 + Wls protein_coding retained_intron MGP_C3HHeJ_T0064187.1 MGP_C3HHeJ_G0027720.1 mouse_genomes_project 3 162624673 162627497 + Wls protein_coding retained_intron MGP_C3HHeJ_T0061796.1 MGP_C3HHeJ_G0027221.1 mouse_genomes_project 3 92510856 92512597 - MGP_C3HHeJ_P0061796 Lce1a1 protein_coding protein_coding MGP_C3HHeJ_T0014169.1 MGP_C3HHeJ_G0012273.1 mouse_genomes_project 3 137829181 137829728 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013914.1 MGP_C3HHeJ_G0012018.1 mouse_genomes_project 3 58197424 58197538 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101409.1 MGP_C3HHeJ_G0039445.1 mouse_genomes_project 3 57222205 57225831 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101410.1 MGP_C3HHeJ_G0039445.1 mouse_genomes_project 3 57223940 57247549 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0061148.1 MGP_C3HHeJ_G0027088.1 mouse_genomes_project 3 87413123 87422639 + MGP_C3HHeJ_P0061148 Hdgf protein_coding protein_coding MGP_C3HHeJ_T0061149.1 MGP_C3HHeJ_G0027088.1 mouse_genomes_project 3 87413547 87421155 + MGP_C3HHeJ_P0061149 Hdgf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061150.1 MGP_C3HHeJ_G0027088.1 mouse_genomes_project 3 87414029 87420672 + Hdgf protein_coding processed_transcript MGP_C3HHeJ_T0061151.1 MGP_C3HHeJ_G0027088.1 mouse_genomes_project 3 87416538 87420688 + Hdgf protein_coding processed_transcript MGP_C3HHeJ_T0061152.1 MGP_C3HHeJ_G0027088.1 mouse_genomes_project 3 87420466 87421283 + Hdgf protein_coding retained_intron MGP_C3HHeJ_T0063488.1 MGP_C3HHeJ_G0027597.1 mouse_genomes_project 3 134917214 135039757 - MGP_C3HHeJ_P0063488 protein_coding protein_coding MGP_C3HHeJ_T0063489.1 MGP_C3HHeJ_G0027597.1 mouse_genomes_project 3 134921368 134937476 - MGP_C3HHeJ_P0063489 protein_coding protein_coding MGP_C3HHeJ_T0063490.1 MGP_C3HHeJ_G0027597.1 mouse_genomes_project 3 134959532 135039757 - MGP_C3HHeJ_P0063490 protein_coding protein_coding MGP_C3HHeJ_T0063491.1 MGP_C3HHeJ_G0027597.1 mouse_genomes_project 3 134972407 135039817 - MGP_C3HHeJ_P0063491 protein_coding protein_coding MGP_C3HHeJ_T0101968.1 MGP_C3HHeJ_G0039933.1 mouse_genomes_project 3 99173578 99182384 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013771.1 MGP_C3HHeJ_G0011875.1 mouse_genomes_project 3 9967467 9968053 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011452.1 MGP_C3HHeJ_G0009585.1 mouse_genomes_project 3 103829756 103830056 + Gm23820 misc_RNA misc_RNA MGP_C3HHeJ_T0014108.1 MGP_C3HHeJ_G0012212.1 mouse_genomes_project 3 117814952 117815394 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007490.1 MGP_C3HHeJ_G0006128.1 mouse_genomes_project 3 73083511 73091558 - Gm20356 lincRNA lincRNA MGP_C3HHeJ_T0061195.1 MGP_C3HHeJ_G0027099.1 mouse_genomes_project 3 87602810 87643292 + MGP_C3HHeJ_P0061195 Iqgap3 protein_coding protein_coding MGP_C3HHeJ_T0061196.1 MGP_C3HHeJ_G0027099.1 mouse_genomes_project 3 87602859 87608430 + Iqgap3 protein_coding retained_intron MGP_C3HHeJ_T0061197.1 MGP_C3HHeJ_G0027099.1 mouse_genomes_project 3 87602867 87630645 + MGP_C3HHeJ_P0061197 Iqgap3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061198.1 MGP_C3HHeJ_G0027099.1 mouse_genomes_project 3 87607027 87608423 + Iqgap3 protein_coding retained_intron MGP_C3HHeJ_T0061199.1 MGP_C3HHeJ_G0027099.1 mouse_genomes_project 3 87627032 87643288 + MGP_C3HHeJ_P0061199 Iqgap3 protein_coding protein_coding MGP_C3HHeJ_T0061200.1 MGP_C3HHeJ_G0027099.1 mouse_genomes_project 3 87629370 87634404 + Iqgap3 protein_coding retained_intron MGP_C3HHeJ_T0013822.1 MGP_C3HHeJ_G0011926.1 mouse_genomes_project 3 28413527 28413795 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013891.1 MGP_C3HHeJ_G0011995.1 mouse_genomes_project 3 51232768 51233087 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007539.1 MGP_C3HHeJ_G0006161.1 mouse_genomes_project 3 95568110 95584025 - lincRNA lincRNA MGP_C3HHeJ_T0099262.1 MGP_C3HHeJ_G0037456.1 mouse_genomes_project 3 64915695 64915848 - Gm26442 snRNA snRNA MGP_C3HHeJ_T0001272.1 MGP_C3HHeJ_G0001204.1 mouse_genomes_project 3 123309488 123310561 - TEC TEC MGP_C3HHeJ_T0061058.1 MGP_C3HHeJ_G0027067.1 mouse_genomes_project 3 85279516 85299343 - MGP_C3HHeJ_P0061058 Glt28d2 protein_coding protein_coding MGP_C3HHeJ_T0061140.1 MGP_C3HHeJ_G0027085.1 mouse_genomes_project 3 87288708 87308811 + MGP_C3HHeJ_P0061140 Insrr protein_coding protein_coding MGP_C3HHeJ_T0061141.1 MGP_C3HHeJ_G0027085.1 mouse_genomes_project 3 87288722 87297855 + Insrr protein_coding retained_intron MGP_C3HHeJ_T0061142.1 MGP_C3HHeJ_G0027085.1 mouse_genomes_project 3 87288851 87308762 + MGP_C3HHeJ_P0061142 Insrr protein_coding protein_coding MGP_C3HHeJ_T0061143.1 MGP_C3HHeJ_G0027085.1 mouse_genomes_project 3 87294712 87295578 + Insrr protein_coding processed_transcript MGP_C3HHeJ_T0004206.1 MGP_C3HHeJ_G0003693.1 mouse_genomes_project 3 88936507 88942863 + Gm15417 antisense antisense MGP_C3HHeJ_T0004207.1 MGP_C3HHeJ_G0003693.1 mouse_genomes_project 3 88936627 88942863 + Gm15417 antisense antisense MGP_C3HHeJ_T0004208.1 MGP_C3HHeJ_G0003693.1 mouse_genomes_project 3 88938867 88943413 + Gm15417 antisense antisense MGP_C3HHeJ_T0004209.1 MGP_C3HHeJ_G0003693.1 mouse_genomes_project 3 88940607 88942785 + Gm15417 antisense antisense MGP_C3HHeJ_T0001175.1 MGP_C3HHeJ_G0001107.1 mouse_genomes_project 3 51359028 51361693 + TEC TEC MGP_C3HHeJ_T0001084.1 MGP_C3HHeJ_G0001018.1 mouse_genomes_project 3 15899353 15903301 + TEC TEC MGP_C3HHeJ_T0101981.1 MGP_C3HHeJ_G0039946.1 mouse_genomes_project 3 158225533 158226404 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001173.1 MGP_C3HHeJ_G0001105.1 mouse_genomes_project 3 50512561 50514630 + TEC TEC MGP_C3HHeJ_T0101938.1 MGP_C3HHeJ_G0039903.1 mouse_genomes_project 3 11786321 11801158 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014095.1 MGP_C3HHeJ_G0012199.1 mouse_genomes_project 3 113442030 113442817 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062085.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95960444 95965867 - MGP_C3HHeJ_P0062085 Ecm1 protein_coding protein_coding MGP_C3HHeJ_T0062086.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95960445 95965865 - MGP_C3HHeJ_P0062086 Ecm1 protein_coding protein_coding MGP_C3HHeJ_T0062087.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95960446 95961316 - Ecm1 protein_coding retained_intron MGP_C3HHeJ_T0062088.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95962434 95965847 - MGP_C3HHeJ_P0062088 Ecm1 protein_coding protein_coding MGP_C3HHeJ_T0062089.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95962446 95965865 - MGP_C3HHeJ_P0062089 Ecm1 protein_coding protein_coding MGP_C3HHeJ_T0062090.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95962507 95965867 - MGP_C3HHeJ_P0062090 Ecm1 protein_coding protein_coding MGP_C3HHeJ_T0062091.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95962897 95965842 - MGP_C3HHeJ_P0062091 Ecm1 protein_coding protein_coding MGP_C3HHeJ_T0062092.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95963058 95965847 - MGP_C3HHeJ_P0062092 Ecm1 protein_coding protein_coding MGP_C3HHeJ_T0062093.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95963647 95964521 - Ecm1 protein_coding retained_intron MGP_C3HHeJ_T0062094.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95964181 95965867 - MGP_C3HHeJ_P0062094 Ecm1 protein_coding protein_coding MGP_C3HHeJ_T0014107.1 MGP_C3HHeJ_G0012211.1 mouse_genomes_project 3 117198791 117199956 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100520.1 MGP_C3HHeJ_G0038714.1 mouse_genomes_project 3 5900494 5900613 - Gm23670 snoRNA snoRNA MGP_C3HHeJ_T0063196.1 MGP_C3HHeJ_G0027545.1 mouse_genomes_project 3 124513241 124515224 + MGP_C3HHeJ_P0063196 1810037I17Rik protein_coding protein_coding MGP_C3HHeJ_T0100544.1 MGP_C3HHeJ_G0038738.1 mouse_genomes_project 3 68836969 68837100 - Gm23484 snoRNA snoRNA MGP_C3HHeJ_T0061694.1 MGP_C3HHeJ_G0027177.1 mouse_genomes_project 3 89993936 89998636 - Slc27a3 protein_coding retained_intron MGP_C3HHeJ_T0061695.1 MGP_C3HHeJ_G0027177.1 mouse_genomes_project 3 89993936 89998625 - MGP_C3HHeJ_P0061695 Slc27a3 protein_coding protein_coding MGP_C3HHeJ_T0061696.1 MGP_C3HHeJ_G0027177.1 mouse_genomes_project 3 89993938 89998362 - MGP_C3HHeJ_P0061696 Slc27a3 protein_coding protein_coding MGP_C3HHeJ_T0061697.1 MGP_C3HHeJ_G0027177.1 mouse_genomes_project 3 89996132 89997679 - Slc27a3 protein_coding retained_intron MGP_C3HHeJ_T0061698.1 MGP_C3HHeJ_G0027177.1 mouse_genomes_project 3 89997060 89998328 - Slc27a3 protein_coding processed_transcript MGP_C3HHeJ_T0001229.1 MGP_C3HHeJ_G0001161.1 mouse_genomes_project 3 93285005 93286204 + TEC TEC MGP_C3HHeJ_T0013925.1 MGP_C3HHeJ_G0012029.1 mouse_genomes_project 3 61480961 61481661 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013814.1 MGP_C3HHeJ_G0011918.1 mouse_genomes_project 3 24489427 24489538 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001350.1 MGP_C3HHeJ_G0001281.1 mouse_genomes_project 3 155935642 155939018 - TEC TEC MGP_C3HHeJ_T0014216.1 MGP_C3HHeJ_G0012320.1 mouse_genomes_project 3 156804753 156805090 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014100.1 MGP_C3HHeJ_G0012204.1 mouse_genomes_project 3 114838159 114838766 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001331.1 MGP_C3HHeJ_G0001262.1 mouse_genomes_project 3 138714070 138715073 - TEC TEC MGP_C3HHeJ_T0007373.1 MGP_C3HHeJ_G0006041.1 mouse_genomes_project 3 10841077 10842215 + lincRNA lincRNA MGP_C3HHeJ_T0007374.1 MGP_C3HHeJ_G0006041.1 mouse_genomes_project 3 10841104 10842216 + lincRNA lincRNA MGP_C3HHeJ_T0007375.1 MGP_C3HHeJ_G0006041.1 mouse_genomes_project 3 10841150 10842003 + lincRNA lincRNA MGP_C3HHeJ_T0007377.1 MGP_C3HHeJ_G0006041.1 mouse_genomes_project 3 10841328 10844019 + lincRNA lincRNA MGP_C3HHeJ_T0060984.1 MGP_C3HHeJ_G0027050.1 mouse_genomes_project 3 82325477 82335253 - MGP_C3HHeJ_P0060984 Fgb protein_coding protein_coding MGP_C3HHeJ_T0062591.1 MGP_C3HHeJ_G0027411.1 mouse_genomes_project 3 105630659 105635621 + MGP_C3HHeJ_P0062591 Ppm1j protein_coding protein_coding MGP_C3HHeJ_T0062592.1 MGP_C3HHeJ_G0027411.1 mouse_genomes_project 3 105635211 105635621 + Ppm1j protein_coding retained_intron MGP_C3HHeJ_T0098433.1 MGP_C3HHeJ_G0036638.1 mouse_genomes_project 3 104560497 104561920 - Gm43149 sense_intronic sense_intronic MGP_C3HHeJ_T0004214.1 MGP_C3HHeJ_G0003698.1 mouse_genomes_project 3 94430787 94441132 - Gm43306 antisense antisense MGP_C3HHeJ_T0011444.1 MGP_C3HHeJ_G0009577.1 mouse_genomes_project 3 71289742 71289833 + Gm27465 misc_RNA misc_RNA MGP_C3HHeJ_T0100563.1 MGP_C3HHeJ_G0038757.1 mouse_genomes_project 3 97029656 97029792 - Gm22581 snoRNA snoRNA MGP_C3HHeJ_T0001252.1 MGP_C3HHeJ_G0001184.1 mouse_genomes_project 3 109573137 109574568 + TEC TEC MGP_C3HHeJ_T0001239.1 MGP_C3HHeJ_G0001171.1 mouse_genomes_project 3 97757871 97758834 + TEC TEC MGP_C3HHeJ_T0017795.1 MGP_C3HHeJ_G0015290.1 mouse_genomes_project 3 150548229 150560144 + Gm43574 processed_transcript processed_transcript MGP_C3HHeJ_T0014124.1 MGP_C3HHeJ_G0012228.1 mouse_genomes_project 3 123695749 123696161 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001254.1 MGP_C3HHeJ_G0001186.1 mouse_genomes_project 3 111690626 111693365 + TEC TEC MGP_C3HHeJ_T0001183.1 MGP_C3HHeJ_G0001115.1 mouse_genomes_project 3 53870208 53872226 + TEC TEC MGP_C3HHeJ_T0098458.1 MGP_C3HHeJ_G0036663.1 mouse_genomes_project 3 106633626 106636949 - Gm43329 sense_intronic sense_intronic MGP_C3HHeJ_T0007371.1 MGP_C3HHeJ_G0006039.1 mouse_genomes_project 3 9176454 9198513 - Gm10745 lincRNA lincRNA MGP_C3HHeJ_T0014219.1 MGP_C3HHeJ_G0012323.1 mouse_genomes_project 3 160203888 160204658 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100585.1 MGP_C3HHeJ_G0038779.1 mouse_genomes_project 3 144910528 144910621 + Gm25965 snoRNA snoRNA MGP_C3HHeJ_T0007446.1 MGP_C3HHeJ_G0006094.1 mouse_genomes_project 3 39415173 39422276 - Gm43733 lincRNA lincRNA MGP_C3HHeJ_T0007447.1 MGP_C3HHeJ_G0006094.1 mouse_genomes_project 3 39416130 39422306 - Gm43733 lincRNA lincRNA MGP_C3HHeJ_T0007448.1 MGP_C3HHeJ_G0006094.1 mouse_genomes_project 3 39416213 39417144 - Gm43733 lincRNA lincRNA MGP_C3HHeJ_T0004136.1 MGP_C3HHeJ_G0003641.1 mouse_genomes_project 3 27584313 27621174 + Mecomos antisense antisense MGP_C3HHeJ_T0004137.1 MGP_C3HHeJ_G0003641.1 mouse_genomes_project 3 27590265 27596426 + Mecomos antisense antisense MGP_C3HHeJ_T0013943.1 MGP_C3HHeJ_G0012047.1 mouse_genomes_project 3 67203875 67204460 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061846.1 MGP_C3HHeJ_G0027255.1 mouse_genomes_project 3 94478072 94504414 + MGP_C3HHeJ_P0061846 Tdrkh protein_coding protein_coding MGP_C3HHeJ_T0061847.1 MGP_C3HHeJ_G0027255.1 mouse_genomes_project 3 94478099 94499640 + MGP_C3HHeJ_P0061847 Tdrkh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061848.1 MGP_C3HHeJ_G0027255.1 mouse_genomes_project 3 94478116 94500192 + MGP_C3HHeJ_P0061848 Tdrkh protein_coding protein_coding MGP_C3HHeJ_T0061849.1 MGP_C3HHeJ_G0027255.1 mouse_genomes_project 3 94496804 94505314 + MGP_C3HHeJ_P0061849 Tdrkh protein_coding protein_coding MGP_C3HHeJ_T0061850.1 MGP_C3HHeJ_G0027255.1 mouse_genomes_project 3 94496804 94505301 + MGP_C3HHeJ_P0061850 Tdrkh protein_coding protein_coding MGP_C3HHeJ_T0060818.1 MGP_C3HHeJ_G0027009.1 mouse_genomes_project 3 67880459 67892837 - MGP_C3HHeJ_P0060818 Trim59 protein_coding protein_coding MGP_C3HHeJ_T0060819.1 MGP_C3HHeJ_G0027009.1 mouse_genomes_project 3 67881977 67892797 - MGP_C3HHeJ_P0060819 Trim59 protein_coding protein_coding MGP_C3HHeJ_T0060820.1 MGP_C3HHeJ_G0027009.1 mouse_genomes_project 3 67891617 67892797 - Trim59 protein_coding retained_intron MGP_C3HHeJ_T0060821.1 MGP_C3HHeJ_G0027009.1 mouse_genomes_project 3 67891843 67892805 - Trim59 protein_coding processed_transcript MGP_C3HHeJ_T0059787.1 MGP_C3HHeJ_G0026806.1 mouse_genomes_project 3 16822284 16920648 + MGP_C3HHeJ_P0059787 Dnajc5b protein_coding protein_coding MGP_C3HHeJ_T0059788.1 MGP_C3HHeJ_G0026806.1 mouse_genomes_project 3 16822304 16920778 + MGP_C3HHeJ_P0059788 Dnajc5b protein_coding protein_coding MGP_C3HHeJ_T0059789.1 MGP_C3HHeJ_G0026806.1 mouse_genomes_project 3 16844858 16920666 + MGP_C3HHeJ_P0059789 Dnajc5b protein_coding protein_coding MGP_C3HHeJ_T0059790.1 MGP_C3HHeJ_G0026806.1 mouse_genomes_project 3 16845434 16920777 + MGP_C3HHeJ_P0059790 Dnajc5b protein_coding protein_coding MGP_C3HHeJ_T0007559.1 MGP_C3HHeJ_G0006180.1 mouse_genomes_project 3 102977288 103149073 + A230001M10Rik lincRNA lincRNA MGP_C3HHeJ_T0007560.1 MGP_C3HHeJ_G0006180.1 mouse_genomes_project 3 102977405 103004669 + A230001M10Rik lincRNA lincRNA MGP_C3HHeJ_T0007561.1 MGP_C3HHeJ_G0006180.1 mouse_genomes_project 3 102977721 103003874 + A230001M10Rik lincRNA lincRNA MGP_C3HHeJ_T0062351.1 MGP_C3HHeJ_G0027360.1 mouse_genomes_project 3 99322643 99334412 - MGP_C3HHeJ_P0062351 Hsd3b6 protein_coding protein_coding MGP_C3HHeJ_T0062352.1 MGP_C3HHeJ_G0027360.1 mouse_genomes_project 3 99322644 99328214 - MGP_C3HHeJ_P0062352 Hsd3b6 protein_coding protein_coding MGP_C3HHeJ_T0062353.1 MGP_C3HHeJ_G0027360.1 mouse_genomes_project 3 99323614 99334391 - Hsd3b6 protein_coding processed_transcript MGP_C3HHeJ_T0061753.1 MGP_C3HHeJ_G0027190.1 mouse_genomes_project 3 90228164 90230429 + MGP_C3HHeJ_P0061753 S100a4 protein_coding protein_coding MGP_C3HHeJ_T0061754.1 MGP_C3HHeJ_G0027190.1 mouse_genomes_project 3 90229294 90230217 + MGP_C3HHeJ_P0061754 S100a4 protein_coding protein_coding MGP_C3HHeJ_T0062399.1 MGP_C3HHeJ_G0027373.1 mouse_genomes_project 3 101637722 101674816 - MGP_C3HHeJ_P0062399 Cd101 protein_coding protein_coding MGP_C3HHeJ_T0062400.1 MGP_C3HHeJ_G0027373.1 mouse_genomes_project 3 101637725 101666844 - MGP_C3HHeJ_P0062400 Cd101 protein_coding protein_coding MGP_C3HHeJ_T0014026.1 MGP_C3HHeJ_G0012130.1 mouse_genomes_project 3 94530175 94532595 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101957.1 MGP_C3HHeJ_G0039922.1 mouse_genomes_project 3 88019069 88019640 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004340.1 MGP_C3HHeJ_G0003780.1 mouse_genomes_project 3 160864813 160873743 - B230334C09Rik antisense antisense MGP_C3HHeJ_T0007664.1 MGP_C3HHeJ_G0006265.1 mouse_genomes_project 3 145925846 145927756 + Gm42706 lincRNA lincRNA MGP_C3HHeJ_T0061762.1 MGP_C3HHeJ_G0027194.1 mouse_genomes_project 3 90294822 90295880 + MGP_C3HHeJ_P0061762 S100a8 protein_coding protein_coding MGP_C3HHeJ_T0061763.1 MGP_C3HHeJ_G0027194.1 mouse_genomes_project 3 90295155 90295809 + S100a8 protein_coding retained_intron MGP_C3HHeJ_T0001253.1 MGP_C3HHeJ_G0001185.1 mouse_genomes_project 3 111312167 111312934 - TEC TEC MGP_C3HHeJ_T0100539.1 MGP_C3HHeJ_G0038733.1 mouse_genomes_project 3 54803253 54803384 - Gm25727 snoRNA snoRNA MGP_C3HHeJ_T0014215.1 MGP_C3HHeJ_G0012319.1 mouse_genomes_project 3 156804634 156805085 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060156.1 MGP_C3HHeJ_G0026874.1 mouse_genomes_project 3 34301319 34307688 + MGP_C3HHeJ_P0060156 1810062G17Rik protein_coding protein_coding MGP_C3HHeJ_T0063136.1 MGP_C3HHeJ_G0027534.1 mouse_genomes_project 3 123243302 123254812 + MGP_C3HHeJ_P0063136 F3 protein_coding protein_coding MGP_C3HHeJ_T0063137.1 MGP_C3HHeJ_G0027534.1 mouse_genomes_project 3 123243335 123249311 + F3 protein_coding processed_transcript MGP_C3HHeJ_T0063138.1 MGP_C3HHeJ_G0027534.1 mouse_genomes_project 3 123249098 123251945 + F3 protein_coding retained_intron MGP_C3HHeJ_T0063139.1 MGP_C3HHeJ_G0027534.1 mouse_genomes_project 3 123249322 123254812 + MGP_C3HHeJ_P0063139 F3 protein_coding protein_coding MGP_C3HHeJ_T0004300.1 MGP_C3HHeJ_G0003751.1 mouse_genomes_project 3 131517222 131521773 + Gm42650 antisense antisense MGP_C3HHeJ_T0013992.1 MGP_C3HHeJ_G0012096.1 mouse_genomes_project 3 83905131 83906122 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062686.1 MGP_C3HHeJ_G0027436.1 mouse_genomes_project 3 107424449 107470861 - MGP_C3HHeJ_P0062686 Cept1 protein_coding protein_coding MGP_C3HHeJ_T0062687.1 MGP_C3HHeJ_G0027436.1 mouse_genomes_project 3 107425172 107470641 - MGP_C3HHeJ_P0062687 Cept1 protein_coding protein_coding MGP_C3HHeJ_T0062688.1 MGP_C3HHeJ_G0027436.1 mouse_genomes_project 3 107425172 107470790 - MGP_C3HHeJ_P0062688 Cept1 protein_coding protein_coding MGP_C3HHeJ_T0062689.1 MGP_C3HHeJ_G0027436.1 mouse_genomes_project 3 107427443 107470758 - MGP_C3HHeJ_P0062689 Cept1 protein_coding protein_coding MGP_C3HHeJ_T0062690.1 MGP_C3HHeJ_G0027436.1 mouse_genomes_project 3 107442500 107470802 - MGP_C3HHeJ_P0062690 Cept1 protein_coding protein_coding MGP_C3HHeJ_T0062691.1 MGP_C3HHeJ_G0027436.1 mouse_genomes_project 3 107454298 107470777 - MGP_C3HHeJ_P0062691 Cept1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062692.1 MGP_C3HHeJ_G0027436.1 mouse_genomes_project 3 107462369 107470651 - MGP_C3HHeJ_P0062692 Cept1 protein_coding protein_coding MGP_C3HHeJ_T0014067.1 MGP_C3HHeJ_G0012171.1 mouse_genomes_project 3 104704179 104704643 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059953.1 MGP_C3HHeJ_G0026836.1 mouse_genomes_project 3 28179591 28198443 + MGP_C3HHeJ_P0059953 Mynn protein_coding protein_coding MGP_C3HHeJ_T0059954.1 MGP_C3HHeJ_G0026836.1 mouse_genomes_project 3 28180157 28198443 + MGP_C3HHeJ_P0059954 Mynn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059955.1 MGP_C3HHeJ_G0026836.1 mouse_genomes_project 3 28180163 28196938 + MGP_C3HHeJ_P0059955 Mynn protein_coding protein_coding MGP_C3HHeJ_T0059956.1 MGP_C3HHeJ_G0026836.1 mouse_genomes_project 3 28180165 28181685 + Mynn protein_coding retained_intron MGP_C3HHeJ_T0059957.1 MGP_C3HHeJ_G0026836.1 mouse_genomes_project 3 28180170 28197071 + MGP_C3HHeJ_P0059957 Mynn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059958.1 MGP_C3HHeJ_G0026836.1 mouse_genomes_project 3 28190985 28195365 + Mynn protein_coding retained_intron MGP_C3HHeJ_T0013788.1 MGP_C3HHeJ_G0011892.1 mouse_genomes_project 3 14527402 14528741 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014001.1 MGP_C3HHeJ_G0012105.1 mouse_genomes_project 3 87478453 87478874 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060697.1 MGP_C3HHeJ_G0026980.1 mouse_genomes_project 3 62553578 62582804 - MGP_C3HHeJ_P0060697 Slc33a1 protein_coding protein_coding MGP_C3HHeJ_T0060698.1 MGP_C3HHeJ_G0026980.1 mouse_genomes_project 3 62560485 62582906 - MGP_C3HHeJ_P0060698 Slc33a1 protein_coding protein_coding MGP_C3HHeJ_T0060699.1 MGP_C3HHeJ_G0026980.1 mouse_genomes_project 3 62560569 62582510 - MGP_C3HHeJ_P0060699 Slc33a1 protein_coding protein_coding MGP_C3HHeJ_T0007579.1 MGP_C3HHeJ_G0006195.1 mouse_genomes_project 3 109217071 109231373 + Gm42754 lincRNA lincRNA MGP_C3HHeJ_T0063628.1 MGP_C3HHeJ_G0027621.1 mouse_genomes_project 3 140045369 140064054 - MGP_C3HHeJ_P0063628 Gm5105 protein_coding protein_coding MGP_C3HHeJ_T0013912.1 MGP_C3HHeJ_G0012016.1 mouse_genomes_project 3 57858247 57860059 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060170.1 MGP_C3HHeJ_G0026877.1 mouse_genomes_project 3 34401625 34443320 - MGP_C3HHeJ_P0060170 Bbs7 protein_coding protein_coding MGP_C3HHeJ_T0060171.1 MGP_C3HHeJ_G0026877.1 mouse_genomes_project 3 34401625 34443408 - MGP_C3HHeJ_P0060171 Bbs7 protein_coding protein_coding MGP_C3HHeJ_T0060172.1 MGP_C3HHeJ_G0026877.1 mouse_genomes_project 3 34403356 34443216 - MGP_C3HHeJ_P0060172 Bbs7 protein_coding protein_coding MGP_C3HHeJ_T0060173.1 MGP_C3HHeJ_G0026877.1 mouse_genomes_project 3 34404267 34405779 - Bbs7 protein_coding retained_intron MGP_C3HHeJ_T0060174.1 MGP_C3HHeJ_G0026877.1 mouse_genomes_project 3 34438171 34443320 - Bbs7 protein_coding retained_intron MGP_C3HHeJ_T0060175.1 MGP_C3HHeJ_G0026877.1 mouse_genomes_project 3 34438998 34443320 - MGP_C3HHeJ_P0060175 Bbs7 protein_coding protein_coding MGP_C3HHeJ_T0011440.1 MGP_C3HHeJ_G0009573.1 mouse_genomes_project 3 32382619 32382891 + Mir1897 misc_RNA misc_RNA MGP_C3HHeJ_T0013776.1 MGP_C3HHeJ_G0011880.1 mouse_genomes_project 3 11164971 11165226 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100537.1 MGP_C3HHeJ_G0038731.1 mouse_genomes_project 3 51793865 51793984 + Gm23675 snoRNA snoRNA MGP_C3HHeJ_T0099295.1 MGP_C3HHeJ_G0037489.1 mouse_genomes_project 3 104911358 104911460 + Gm23830 snRNA snRNA MGP_C3HHeJ_T0013980.1 MGP_C3HHeJ_G0012084.1 mouse_genomes_project 3 77943188 77944033 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101942.1 MGP_C3HHeJ_G0039907.1 mouse_genomes_project 3 57908798 57909063 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007379.1 MGP_C3HHeJ_G0006044.1 mouse_genomes_project 3 12578065 12596939 - Gm33819 lincRNA lincRNA MGP_C3HHeJ_T0100569.1 MGP_C3HHeJ_G0038763.1 mouse_genomes_project 3 109018297 109018428 + Gm25592 snoRNA snoRNA MGP_C3HHeJ_T0001125.1 MGP_C3HHeJ_G0001059.1 mouse_genomes_project 3 35844611 35845167 + TEC TEC MGP_C3HHeJ_T0062668.1 MGP_C3HHeJ_G0027430.1 mouse_genomes_project 3 106898505 106906495 - MGP_C3HHeJ_P0062668 Chil5 protein_coding protein_coding MGP_C3HHeJ_T0062669.1 MGP_C3HHeJ_G0027430.1 mouse_genomes_project 3 106898551 106906500 - MGP_C3HHeJ_P0062669 Chil5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062670.1 MGP_C3HHeJ_G0027430.1 mouse_genomes_project 3 106898718 106915875 - MGP_C3HHeJ_P0062670 Chil5 protein_coding protein_coding MGP_C3HHeJ_T0101183.1 MGP_C3HHeJ_G0039331.1 mouse_genomes_project 3 19077495 19132768 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101184.1 MGP_C3HHeJ_G0039331.1 mouse_genomes_project 3 19077574 19087061 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101185.1 MGP_C3HHeJ_G0039331.1 mouse_genomes_project 3 19077764 19077929 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0061638.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89655233 89676227 + MGP_C3HHeJ_P0061638 Tpm3 protein_coding protein_coding MGP_C3HHeJ_T0061639.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89655235 89689436 + MGP_C3HHeJ_P0061639 Tpm3 protein_coding protein_coding MGP_C3HHeJ_T0061640.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89662124 89689436 + MGP_C3HHeJ_P0061640 Tpm3 protein_coding protein_coding MGP_C3HHeJ_T0061641.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89662238 89689436 + MGP_C3HHeJ_P0061641 Tpm3 protein_coding protein_coding MGP_C3HHeJ_T0061642.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89662249 89673693 + Tpm3 protein_coding retained_intron MGP_C3HHeJ_T0061643.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89662249 89671983 + Tpm3 protein_coding retained_intron MGP_C3HHeJ_T0061644.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89662299 89682880 + MGP_C3HHeJ_P0061644 Tpm3 protein_coding protein_coding MGP_C3HHeJ_T0061645.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89662316 89675192 + MGP_C3HHeJ_P0061645 Tpm3 protein_coding protein_coding MGP_C3HHeJ_T0061646.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89669306 89671653 + Tpm3 protein_coding retained_intron MGP_C3HHeJ_T0061647.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89671414 89673904 + Tpm3 protein_coding retained_intron MGP_C3HHeJ_T0061648.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89671544 89672021 + Tpm3 protein_coding retained_intron MGP_C3HHeJ_T0061649.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89671561 89672666 + Tpm3 protein_coding retained_intron MGP_C3HHeJ_T0061650.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89672166 89674139 + Tpm3 protein_coding retained_intron MGP_C3HHeJ_T0061651.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89673727 89674569 + Tpm3 protein_coding retained_intron MGP_C3HHeJ_T0061652.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89674155 89682880 + Tpm3 protein_coding processed_transcript MGP_C3HHeJ_T0007438.1 MGP_C3HHeJ_G0006090.1 mouse_genomes_project 3 39178781 39183308 - Gm16508 lincRNA lincRNA MGP_C3HHeJ_T0064084.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157285039 157311244 + MGP_C3HHeJ_P0064084 Cryz protein_coding protein_coding MGP_C3HHeJ_T0064085.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157285039 157311242 + MGP_C3HHeJ_P0064085 Cryz protein_coding protein_coding MGP_C3HHeJ_T0064086.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157285039 157311244 + MGP_C3HHeJ_P0064086 Cryz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064087.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157285472 157310229 + MGP_C3HHeJ_P0064087 Cryz protein_coding protein_coding MGP_C3HHeJ_T0064088.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157285525 157299544 + MGP_C3HHeJ_P0064088 Cryz protein_coding protein_coding MGP_C3HHeJ_T0064089.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157285550 157306672 + MGP_C3HHeJ_P0064089 Cryz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064090.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157285680 157299426 + MGP_C3HHeJ_P0064090 Cryz protein_coding protein_coding MGP_C3HHeJ_T0064091.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157285730 157301838 + MGP_C3HHeJ_P0064091 Cryz protein_coding protein_coding MGP_C3HHeJ_T0064092.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157285766 157306572 + MGP_C3HHeJ_P0064092 Cryz protein_coding protein_coding MGP_C3HHeJ_T0064093.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157294605 157310232 + MGP_C3HHeJ_P0064093 Cryz protein_coding protein_coding MGP_C3HHeJ_T0064094.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157303871 157307433 + Cryz protein_coding retained_intron MGP_C3HHeJ_T0007516.1 MGP_C3HHeJ_G0006150.1 mouse_genomes_project 3 87730415 87735908 - AI849053 lincRNA lincRNA MGP_C3HHeJ_T0004147.1 MGP_C3HHeJ_G0003649.1 mouse_genomes_project 3 31541660 31542351 + Gm43140 antisense antisense MGP_C3HHeJ_T0063372.1 MGP_C3HHeJ_G0027572.1 mouse_genomes_project 3 131562695 131581033 - MGP_C3HHeJ_P0063372 Lrit3 protein_coding protein_coding MGP_C3HHeJ_T0063373.1 MGP_C3HHeJ_G0027572.1 mouse_genomes_project 3 131563105 131581033 - MGP_C3HHeJ_P0063373 Lrit3 protein_coding protein_coding MGP_C3HHeJ_T0063374.1 MGP_C3HHeJ_G0027572.1 mouse_genomes_project 3 131567124 131577524 - Lrit3 protein_coding retained_intron MGP_C3HHeJ_T0063250.1 MGP_C3HHeJ_G0027556.1 mouse_genomes_project 3 126973942 127308575 + MGP_C3HHeJ_P0063250 Ndst4 protein_coding protein_coding MGP_C3HHeJ_T0063251.1 MGP_C3HHeJ_G0027556.1 mouse_genomes_project 3 126973956 127265352 + Ndst4 protein_coding retained_intron MGP_C3HHeJ_T0063252.1 MGP_C3HHeJ_G0027556.1 mouse_genomes_project 3 127140098 127189706 + MGP_C3HHeJ_P0063252 Ndst4 protein_coding protein_coding MGP_C3HHeJ_T0063253.1 MGP_C3HHeJ_G0027556.1 mouse_genomes_project 3 127259671 127308015 + MGP_C3HHeJ_P0063253 Ndst4 protein_coding protein_coding MGP_C3HHeJ_T0063254.1 MGP_C3HHeJ_G0027556.1 mouse_genomes_project 3 127259681 127269652 + Ndst4 protein_coding processed_transcript MGP_C3HHeJ_T0063255.1 MGP_C3HHeJ_G0027556.1 mouse_genomes_project 3 127289840 127304361 + MGP_C3HHeJ_P0063255 Ndst4 protein_coding protein_coding MGP_C3HHeJ_T0064128.1 MGP_C3HHeJ_G0027713.1 mouse_genomes_project 3 160691554 160722952 - MGP_C3HHeJ_P0064128 Cth protein_coding protein_coding MGP_C3HHeJ_T0064129.1 MGP_C3HHeJ_G0027713.1 mouse_genomes_project 3 160691729 160695013 - Cth protein_coding processed_transcript MGP_C3HHeJ_T0064130.1 MGP_C3HHeJ_G0027713.1 mouse_genomes_project 3 160694602 160702987 - Cth protein_coding retained_intron MGP_C3HHeJ_T0064131.1 MGP_C3HHeJ_G0027713.1 mouse_genomes_project 3 160717088 160722926 - Cth protein_coding retained_intron MGP_C3HHeJ_T0098465.1 MGP_C3HHeJ_G0036670.1 mouse_genomes_project 3 146679724 146682911 - Gm43707 sense_intronic sense_intronic MGP_C3HHeJ_T0062817.1 MGP_C3HHeJ_G0027470.1 mouse_genomes_project 3 109176696 109182138 + MGP_C3HHeJ_P0062817 Amigo1 protein_coding protein_coding MGP_C3HHeJ_T0062818.1 MGP_C3HHeJ_G0027470.1 mouse_genomes_project 3 109176711 109182139 + MGP_C3HHeJ_P0062818 Amigo1 protein_coding protein_coding MGP_C3HHeJ_T0062819.1 MGP_C3HHeJ_G0027470.1 mouse_genomes_project 3 109176719 109182648 + MGP_C3HHeJ_P0062819 Amigo1 protein_coding protein_coding MGP_C3HHeJ_T0062820.1 MGP_C3HHeJ_G0027470.1 mouse_genomes_project 3 109178404 109182137 + MGP_C3HHeJ_P0062820 Amigo1 protein_coding protein_coding MGP_C3HHeJ_T0062821.1 MGP_C3HHeJ_G0027470.1 mouse_genomes_project 3 109178462 109182129 + MGP_C3HHeJ_P0062821 Amigo1 protein_coding protein_coding MGP_C3HHeJ_T0010466.1 MGP_C3HHeJ_G0008599.1 mouse_genomes_project 3 129213894 129213962 + Mir302c miRNA miRNA MGP_C3HHeJ_T0059646.1 MGP_C3HHeJ_G0026759.1 mouse_genomes_project 3 2712697 2728657 - MGP_C3HHeJ_P0059646 Pex2 protein_coding protein_coding MGP_C3HHeJ_T0059647.1 MGP_C3HHeJ_G0026759.1 mouse_genomes_project 3 2712697 2728657 - MGP_C3HHeJ_P0059647 Pex2 protein_coding protein_coding MGP_C3HHeJ_T0059648.1 MGP_C3HHeJ_G0026759.1 mouse_genomes_project 3 2713008 2716245 - MGP_C3HHeJ_P0059648 Pex2 protein_coding protein_coding MGP_C3HHeJ_T0059649.1 MGP_C3HHeJ_G0026759.1 mouse_genomes_project 3 2713009 2728652 - MGP_C3HHeJ_P0059649 Pex2 protein_coding protein_coding MGP_C3HHeJ_T0059650.1 MGP_C3HHeJ_G0026759.1 mouse_genomes_project 3 2713009 2728746 - MGP_C3HHeJ_P0059650 Pex2 protein_coding protein_coding MGP_C3HHeJ_T0059651.1 MGP_C3HHeJ_G0026759.1 mouse_genomes_project 3 2713013 2728635 - MGP_C3HHeJ_P0059651 Pex2 protein_coding protein_coding MGP_C3HHeJ_T0001285.1 MGP_C3HHeJ_G0001217.1 mouse_genomes_project 3 128253302 128255781 + TEC TEC MGP_C3HHeJ_T0060825.1 MGP_C3HHeJ_G0027011.1 mouse_genomes_project 3 68069886 68071086 + MGP_C3HHeJ_P0060825 Arl14 protein_coding protein_coding MGP_C3HHeJ_T0101953.1 MGP_C3HHeJ_G0039918.1 mouse_genomes_project 3 80254912 80255380 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013888.1 MGP_C3HHeJ_G0011992.1 mouse_genomes_project 3 49843943 49844376 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014071.1 MGP_C3HHeJ_G0012175.1 mouse_genomes_project 3 105770867 105771122 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061766.1 MGP_C3HHeJ_G0027196.1 mouse_genomes_project 3 90353355 90368790 + MGP_C3HHeJ_P0061766 Pglyrp4 protein_coding protein_coding MGP_C3HHeJ_T0061767.1 MGP_C3HHeJ_G0027196.1 mouse_genomes_project 3 90353360 90367787 + MGP_C3HHeJ_P0061767 Pglyrp4 protein_coding protein_coding MGP_C3HHeJ_T0061768.1 MGP_C3HHeJ_G0027196.1 mouse_genomes_project 3 90364599 90368788 + Pglyrp4 protein_coding processed_transcript MGP_C3HHeJ_T0063473.1 MGP_C3HHeJ_G0027594.1 mouse_genomes_project 3 134687842 134757870 - MGP_C3HHeJ_P0063473 Npnt protein_coding protein_coding MGP_C3HHeJ_T0063474.1 MGP_C3HHeJ_G0027594.1 mouse_genomes_project 3 134687859 134757622 - MGP_C3HHeJ_P0063474 Npnt protein_coding protein_coding MGP_C3HHeJ_T0063475.1 MGP_C3HHeJ_G0027594.1 mouse_genomes_project 3 134688780 134757739 - MGP_C3HHeJ_P0063475 Npnt protein_coding protein_coding MGP_C3HHeJ_T0063476.1 MGP_C3HHeJ_G0027594.1 mouse_genomes_project 3 134690527 134757622 - MGP_C3HHeJ_P0063476 Npnt protein_coding protein_coding MGP_C3HHeJ_T0063477.1 MGP_C3HHeJ_G0027594.1 mouse_genomes_project 3 134690527 134757622 - MGP_C3HHeJ_P0063477 Npnt protein_coding protein_coding MGP_C3HHeJ_T0063478.1 MGP_C3HHeJ_G0027594.1 mouse_genomes_project 3 134697273 134712447 - Npnt protein_coding retained_intron MGP_C3HHeJ_T0060591.1 MGP_C3HHeJ_G0026955.1 mouse_genomes_project 3 57108454 57125831 - MGP_C3HHeJ_P0060591 Siah2 protein_coding protein_coding MGP_C3HHeJ_T0060592.1 MGP_C3HHeJ_G0026955.1 mouse_genomes_project 3 57109692 57119559 - Siah2 protein_coding processed_transcript MGP_C3HHeJ_T0004144.1 MGP_C3HHeJ_G0003646.1 mouse_genomes_project 3 30284722 30287361 + Gm37640 antisense antisense MGP_C3HHeJ_T0014130.1 MGP_C3HHeJ_G0012234.1 mouse_genomes_project 3 124738722 124739410 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063838.1 MGP_C3HHeJ_G0027667.1 mouse_genomes_project 3 148383074 148443482 - MGP_C3HHeJ_P0063838 Wdr63 protein_coding protein_coding MGP_C3HHeJ_T0063839.1 MGP_C3HHeJ_G0027667.1 mouse_genomes_project 3 148383075 148438577 - MGP_C3HHeJ_P0063839 Wdr63 protein_coding unknown_likely_coding MGP_C3HHeJ_T0063840.1 MGP_C3HHeJ_G0027667.1 mouse_genomes_project 3 148383076 148389508 - Wdr63 protein_coding processed_transcript MGP_C3HHeJ_T0063841.1 MGP_C3HHeJ_G0027667.1 mouse_genomes_project 3 148385323 148390760 - Wdr63 protein_coding processed_transcript MGP_C3HHeJ_T0013750.1 MGP_C3HHeJ_G0011854.1 mouse_genomes_project 3 4658540 4659569 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001241.1 MGP_C3HHeJ_G0001173.1 mouse_genomes_project 3 98396865 98401986 + TEC TEC MGP_C3HHeJ_T0014052.1 MGP_C3HHeJ_G0012156.1 mouse_genomes_project 3 101302525 101302816 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001198.1 MGP_C3HHeJ_G0001130.1 mouse_genomes_project 3 62067133 62067619 + TEC TEC MGP_C3HHeJ_T0001119.1 MGP_C3HHeJ_G0001053.1 mouse_genomes_project 3 35339689 35345493 + TEC TEC MGP_C3HHeJ_T0001086.1 MGP_C3HHeJ_G0001020.1 mouse_genomes_project 3 17746873 17747119 + TEC TEC MGP_C3HHeJ_T0013967.1 MGP_C3HHeJ_G0012071.1 mouse_genomes_project 3 73410982 73411448 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014190.1 MGP_C3HHeJ_G0012294.1 mouse_genomes_project 3 142928225 142928589 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001201.1 MGP_C3HHeJ_G0001133.1 mouse_genomes_project 3 64684121 64685682 - TEC TEC MGP_C3HHeJ_T0101982.1 MGP_C3HHeJ_G0039947.1 mouse_genomes_project 3 159567075 159567550 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017758.1 MGP_C3HHeJ_G0015279.1 mouse_genomes_project 3 107403226 107407167 - 2010016I18Rik processed_transcript antisense MGP_C3HHeJ_T0017759.1 MGP_C3HHeJ_G0015279.1 mouse_genomes_project 3 107403244 107405080 - 2010016I18Rik processed_transcript antisense MGP_C3HHeJ_T0017760.1 MGP_C3HHeJ_G0015279.1 mouse_genomes_project 3 107403257 107404707 - 2010016I18Rik processed_transcript retained_intron MGP_C3HHeJ_T0017761.1 MGP_C3HHeJ_G0015279.1 mouse_genomes_project 3 107403257 107404682 - 2010016I18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017762.1 MGP_C3HHeJ_G0015279.1 mouse_genomes_project 3 107405315 107407102 - 2010016I18Rik processed_transcript retained_intron MGP_C3HHeJ_T0060957.1 MGP_C3HHeJ_G0027042.1 mouse_genomes_project 3 81278562 81321052 - MGP_C3HHeJ_P0060957 Gucy1b3 protein_coding protein_coding MGP_C3HHeJ_T0060958.1 MGP_C3HHeJ_G0027042.1 mouse_genomes_project 3 81280883 81281895 - Gucy1b3 protein_coding retained_intron MGP_C3HHeJ_T0060959.1 MGP_C3HHeJ_G0027042.1 mouse_genomes_project 3 81297517 81321151 - Gucy1b3 protein_coding processed_transcript MGP_C3HHeJ_T0007542.1 MGP_C3HHeJ_G0006164.1 mouse_genomes_project 3 96622870 96636041 - Gm17575 lincRNA lincRNA MGP_C3HHeJ_T0007543.1 MGP_C3HHeJ_G0006164.1 mouse_genomes_project 3 96622871 96631409 - Gm17575 lincRNA lincRNA MGP_C3HHeJ_T0061839.1 MGP_C3HHeJ_G0027252.1 mouse_genomes_project 3 94424615 94426744 + MGP_C3HHeJ_P0061839 C2cd4d protein_coding protein_coding MGP_C3HHeJ_T0061840.1 MGP_C3HHeJ_G0027252.1 mouse_genomes_project 3 94424680 94425342 + C2cd4d protein_coding retained_intron MGP_C3HHeJ_T0061961.1 MGP_C3HHeJ_G0027272.1 mouse_genomes_project 3 95285932 95288890 + MGP_C3HHeJ_P0061961 Tmod4 protein_coding protein_coding MGP_C3HHeJ_T0061962.1 MGP_C3HHeJ_G0027272.1 mouse_genomes_project 3 95285970 95291039 + MGP_C3HHeJ_P0061962 Tmod4 protein_coding protein_coding MGP_C3HHeJ_T0061963.1 MGP_C3HHeJ_G0027272.1 mouse_genomes_project 3 95285971 95291035 + MGP_C3HHeJ_P0061963 Tmod4 protein_coding protein_coding MGP_C3HHeJ_T0061964.1 MGP_C3HHeJ_G0027272.1 mouse_genomes_project 3 95287660 95290574 + Tmod4 protein_coding retained_intron MGP_C3HHeJ_T0061965.1 MGP_C3HHeJ_G0027272.1 mouse_genomes_project 3 95288406 95289103 + Tmod4 protein_coding processed_transcript MGP_C3HHeJ_T0061966.1 MGP_C3HHeJ_G0027272.1 mouse_genomes_project 3 95288889 95291038 + Tmod4 protein_coding retained_intron MGP_C3HHeJ_T0013794.1 MGP_C3HHeJ_G0011898.1 mouse_genomes_project 3 15837512 15838712 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062610.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105714286 105716741 + St7l protein_coding retained_intron MGP_C3HHeJ_T0062611.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105714784 105781782 + MGP_C3HHeJ_P0062611 St7l protein_coding protein_coding MGP_C3HHeJ_T0062612.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105714784 105784947 + MGP_C3HHeJ_P0062612 St7l protein_coding protein_coding MGP_C3HHeJ_T0062613.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105715348 105782666 + MGP_C3HHeJ_P0062613 St7l protein_coding protein_coding MGP_C3HHeJ_T0062614.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105715352 105782790 + MGP_C3HHeJ_P0062614 St7l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062615.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105715361 105742933 + MGP_C3HHeJ_P0062615 St7l protein_coding protein_coding MGP_C3HHeJ_T0062616.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105715394 105742865 + St7l protein_coding processed_transcript MGP_C3HHeJ_T0062617.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105722696 105774467 + MGP_C3HHeJ_P0062617 St7l protein_coding protein_coding MGP_C3HHeJ_T0062618.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105722719 105735746 + St7l protein_coding processed_transcript MGP_C3HHeJ_T0062619.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105735649 105774455 + MGP_C3HHeJ_P0062619 St7l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062620.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105742450 105748548 + St7l protein_coding retained_intron MGP_C3HHeJ_T0063166.1 MGP_C3HHeJ_G0027538.1 mouse_genomes_project 3 123794792 123805736 + Gclm protein_coding processed_transcript MGP_C3HHeJ_T0063167.1 MGP_C3HHeJ_G0027538.1 mouse_genomes_project 3 123795066 123817867 + MGP_C3HHeJ_P0063167 Gclm protein_coding protein_coding MGP_C3HHeJ_T0063168.1 MGP_C3HHeJ_G0027538.1 mouse_genomes_project 3 123795068 123814086 + MGP_C3HHeJ_P0063168 Gclm protein_coding protein_coding MGP_C3HHeJ_T0063169.1 MGP_C3HHeJ_G0027538.1 mouse_genomes_project 3 123795161 123816695 + MGP_C3HHeJ_P0063169 Gclm protein_coding protein_coding MGP_C3HHeJ_T0063170.1 MGP_C3HHeJ_G0027538.1 mouse_genomes_project 3 123813248 123817725 + Gclm protein_coding retained_intron MGP_C3HHeJ_T0059710.1 MGP_C3HHeJ_G0026780.1 mouse_genomes_project 3 7669889 7673812 - MGP_C3HHeJ_P0059710 Slc10a5 protein_coding protein_coding MGP_C3HHeJ_T0001216.1 MGP_C3HHeJ_G0001148.1 mouse_genomes_project 3 77623901 77625541 - TEC TEC MGP_C3HHeJ_T0014120.1 MGP_C3HHeJ_G0012224.1 mouse_genomes_project 3 122781459 122782231 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007462.1 MGP_C3HHeJ_G0006106.1 mouse_genomes_project 3 51185974 51198690 - lincRNA lincRNA MGP_C3HHeJ_T0061775.1 MGP_C3HHeJ_G0027203.1 mouse_genomes_project 3 92164434 92165900 + MGP_C3HHeJ_P0061775 Sprr2b protein_coding protein_coding MGP_C3HHeJ_T0013969.1 MGP_C3HHeJ_G0012073.1 mouse_genomes_project 3 74504798 74506100 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059882.1 MGP_C3HHeJ_G0026825.1 mouse_genomes_project 3 24902525 25210845 - MGP_C3HHeJ_P0059882 Fndc3b protein_coding protein_coding MGP_C3HHeJ_T0059883.1 MGP_C3HHeJ_G0026825.1 mouse_genomes_project 3 24902525 25210886 - MGP_C3HHeJ_P0059883 Fndc3b protein_coding protein_coding MGP_C3HHeJ_T0059884.1 MGP_C3HHeJ_G0026825.1 mouse_genomes_project 3 24982131 25211754 - Fndc3b protein_coding retained_intron MGP_C3HHeJ_T0059885.1 MGP_C3HHeJ_G0026825.1 mouse_genomes_project 3 24989144 25211686 - MGP_C3HHeJ_P0059885 Fndc3b protein_coding protein_coding MGP_C3HHeJ_T0001298.1 MGP_C3HHeJ_G0001230.1 mouse_genomes_project 3 128885514 128888714 - TEC TEC MGP_C3HHeJ_T0014177.1 MGP_C3HHeJ_G0012281.1 mouse_genomes_project 3 140503728 140503954 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101411.1 MGP_C3HHeJ_G0039446.1 mouse_genomes_project 3 58229258 58296758 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101412.1 MGP_C3HHeJ_G0039446.1 mouse_genomes_project 3 58277408 58304384 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0063992.1 MGP_C3HHeJ_G0027691.1 mouse_genomes_project 3 154872610 154927954 - MGP_C3HHeJ_P0063992 Fam73a protein_coding protein_coding MGP_C3HHeJ_T0063993.1 MGP_C3HHeJ_G0027691.1 mouse_genomes_project 3 154874692 154927952 - MGP_C3HHeJ_P0063993 Fam73a protein_coding protein_coding MGP_C3HHeJ_T0063994.1 MGP_C3HHeJ_G0027691.1 mouse_genomes_project 3 154881235 154927930 - MGP_C3HHeJ_P0063994 Fam73a protein_coding protein_coding MGP_C3HHeJ_T0063995.1 MGP_C3HHeJ_G0027691.1 mouse_genomes_project 3 154881402 154885212 - Fam73a protein_coding retained_intron MGP_C3HHeJ_T0063996.1 MGP_C3HHeJ_G0027691.1 mouse_genomes_project 3 154890163 154915679 - MGP_C3HHeJ_P0063996 Fam73a protein_coding protein_coding MGP_C3HHeJ_T0063997.1 MGP_C3HHeJ_G0027691.1 mouse_genomes_project 3 154890337 154897396 - Fam73a protein_coding retained_intron MGP_C3HHeJ_T0063998.1 MGP_C3HHeJ_G0027691.1 mouse_genomes_project 3 154896938 154925547 - MGP_C3HHeJ_P0063998 Fam73a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063999.1 MGP_C3HHeJ_G0027691.1 mouse_genomes_project 3 154925093 154927931 - Fam73a protein_coding retained_intron MGP_C3HHeJ_T0004314.1 MGP_C3HHeJ_G0003761.1 mouse_genomes_project 3 140100528 140111447 + Gm43691 antisense antisense MGP_C3HHeJ_T0001242.1 MGP_C3HHeJ_G0001174.1 mouse_genomes_project 3 98487561 98490624 + TEC TEC MGP_C3HHeJ_T0101976.1 MGP_C3HHeJ_G0039941.1 mouse_genomes_project 3 109011555 109014774 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014129.1 MGP_C3HHeJ_G0012233.1 mouse_genomes_project 3 124635675 124636099 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100556.1 MGP_C3HHeJ_G0038750.1 mouse_genomes_project 3 87061405 87061525 - Gm25167 snoRNA snoRNA MGP_C3HHeJ_T0062354.1 MGP_C3HHeJ_G0027361.1 mouse_genomes_project 3 99395545 99407174 - MGP_C3HHeJ_P0062354 Hsd3b1 protein_coding protein_coding MGP_C3HHeJ_T0062355.1 MGP_C3HHeJ_G0027361.1 mouse_genomes_project 3 99395547 99407174 - MGP_C3HHeJ_P0062355 Hsd3b1 protein_coding protein_coding MGP_C3HHeJ_T0064024.1 MGP_C3HHeJ_G0027695.1 mouse_genomes_project 3 155318295 155412684 + MGP_C3HHeJ_P0064024 Pigk protein_coding protein_coding MGP_C3HHeJ_T0064025.1 MGP_C3HHeJ_G0027695.1 mouse_genomes_project 3 155318301 155359119 + Pigk protein_coding retained_intron MGP_C3HHeJ_T0064026.1 MGP_C3HHeJ_G0027695.1 mouse_genomes_project 3 155318308 155461051 + MGP_C3HHeJ_P0064026 Pigk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064027.1 MGP_C3HHeJ_G0027695.1 mouse_genomes_project 3 155318308 155408726 + MGP_C3HHeJ_P0064027 Pigk protein_coding protein_coding MGP_C3HHeJ_T0064028.1 MGP_C3HHeJ_G0027695.1 mouse_genomes_project 3 155318315 155601083 + MGP_C3HHeJ_P0064028 Pigk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064029.1 MGP_C3HHeJ_G0027695.1 mouse_genomes_project 3 155318318 155408457 + MGP_C3HHeJ_P0064029 Pigk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064030.1 MGP_C3HHeJ_G0027695.1 mouse_genomes_project 3 155356001 155358155 + Pigk protein_coding processed_transcript MGP_C3HHeJ_T0064031.1 MGP_C3HHeJ_G0027695.1 mouse_genomes_project 3 155356220 155408652 + MGP_C3HHeJ_P0064031 Pigk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064032.1 MGP_C3HHeJ_G0027695.1 mouse_genomes_project 3 155384872 155388053 + Pigk protein_coding processed_transcript MGP_C3HHeJ_T0010455.1 MGP_C3HHeJ_G0008588.1 mouse_genomes_project 3 99757532 99757642 - Mir6481 miRNA miRNA MGP_C3HHeJ_T0017726.1 MGP_C3HHeJ_G0015263.1 mouse_genomes_project 3 35160267 35249467 + Gm43439 processed_transcript processed_transcript MGP_C3HHeJ_T0013833.1 MGP_C3HHeJ_G0011937.1 mouse_genomes_project 3 33774960 33775281 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001143.1 MGP_C3HHeJ_G0001077.1 mouse_genomes_project 3 48609320 48613322 - TEC TEC MGP_C3HHeJ_T0013825.1 MGP_C3HHeJ_G0011929.1 mouse_genomes_project 3 30899549 30899781 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014132.1 MGP_C3HHeJ_G0012236.1 mouse_genomes_project 3 125353588 125354189 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060130.1 MGP_C3HHeJ_G0026868.1 mouse_genomes_project 3 33760489 33802113 - MGP_C3HHeJ_P0060130 Mccc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060131.1 MGP_C3HHeJ_G0026868.1 mouse_genomes_project 3 33761013 33802182 - MGP_C3HHeJ_P0060131 Mccc1 protein_coding protein_coding MGP_C3HHeJ_T0060132.1 MGP_C3HHeJ_G0026868.1 mouse_genomes_project 3 33761019 33762290 - Mccc1 protein_coding retained_intron MGP_C3HHeJ_T0060133.1 MGP_C3HHeJ_G0026868.1 mouse_genomes_project 3 33762907 33770295 - Mccc1 protein_coding retained_intron MGP_C3HHeJ_T0060134.1 MGP_C3HHeJ_G0026868.1 mouse_genomes_project 3 33774569 33796858 - Mccc1 protein_coding retained_intron MGP_C3HHeJ_T0060135.1 MGP_C3HHeJ_G0026868.1 mouse_genomes_project 3 33776382 33777684 - Mccc1 protein_coding retained_intron MGP_C3HHeJ_T0060136.1 MGP_C3HHeJ_G0026868.1 mouse_genomes_project 3 33776893 33790911 - MGP_C3HHeJ_P0060136 Mccc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060137.1 MGP_C3HHeJ_G0026868.1 mouse_genomes_project 3 33786067 33802145 - MGP_C3HHeJ_P0060137 Mccc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014085.1 MGP_C3HHeJ_G0012189.1 mouse_genomes_project 3 109623273 109623698 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007412.1 MGP_C3HHeJ_G0006069.1 mouse_genomes_project 3 32221995 32222775 - Gm29135 lincRNA lincRNA MGP_C3HHeJ_T0063704.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144324031 144481331 - MGP_C3HHeJ_P0063704 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063705.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144327115 144481216 - MGP_C3HHeJ_P0063705 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063706.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144327115 144477381 - MGP_C3HHeJ_P0063706 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063707.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144327115 144477381 - MGP_C3HHeJ_P0063707 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063708.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144327115 144477381 - MGP_C3HHeJ_P0063708 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063709.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144328898 144330986 - Pdlim5 protein_coding retained_intron MGP_C3HHeJ_T0063710.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144333804 144389999 - MGP_C3HHeJ_P0063710 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063711.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144333863 144390462 - MGP_C3HHeJ_P0063711 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063712.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144388084 144477423 - MGP_C3HHeJ_P0063712 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063713.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144388319 144481245 - MGP_C3HHeJ_P0063713 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063714.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144388324 144477423 - MGP_C3HHeJ_P0063714 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063715.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144389240 144481256 - MGP_C3HHeJ_P0063715 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063716.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144389347 144481334 - MGP_C3HHeJ_P0063716 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0001223.1 MGP_C3HHeJ_G0001155.1 mouse_genomes_project 3 87551017 87553285 + TEC TEC MGP_C3HHeJ_T0013884.1 MGP_C3HHeJ_G0011988.1 mouse_genomes_project 3 48806458 48806834 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013775.1 MGP_C3HHeJ_G0011879.1 mouse_genomes_project 3 11136008 11136567 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001107.1 MGP_C3HHeJ_G0001041.1 mouse_genomes_project 3 31679236 31680184 + TEC TEC MGP_C3HHeJ_T0010457.1 MGP_C3HHeJ_G0008590.1 mouse_genomes_project 3 109584973 109585047 - Gm22860 miRNA miRNA MGP_C3HHeJ_T0099238.1 MGP_C3HHeJ_G0037432.1 mouse_genomes_project 3 15461817 15461981 - Gm23686 snRNA snRNA MGP_C3HHeJ_T0001079.1 MGP_C3HHeJ_G0001013.1 mouse_genomes_project 3 7642724 7643054 + TEC TEC MGP_C3HHeJ_T0001159.1 MGP_C3HHeJ_G0001093.1 mouse_genomes_project 3 49906793 49908161 + TEC TEC MGP_C3HHeJ_T0001160.1 MGP_C3HHeJ_G0001093.1 mouse_genomes_project 3 49906848 49908161 + TEC TEC MGP_C3HHeJ_T0063323.1 MGP_C3HHeJ_G0027564.1 mouse_genomes_project 3 129348451 129452485 - MGP_C3HHeJ_P0063323 Alpk1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0063324.1 MGP_C3HHeJ_G0027564.1 mouse_genomes_project 3 129349939 129452708 - MGP_C3HHeJ_P0063324 Alpk1 protein_coding protein_coding MGP_C3HHeJ_T0063325.1 MGP_C3HHeJ_G0027564.1 mouse_genomes_project 3 129349939 129410818 - MGP_C3HHeJ_P0063325 Alpk1 protein_coding protein_coding MGP_C3HHeJ_T0063326.1 MGP_C3HHeJ_G0027564.1 mouse_genomes_project 3 129350028 129452708 - Alpk1 protein_coding retained_intron MGP_C3HHeJ_T0063327.1 MGP_C3HHeJ_G0027564.1 mouse_genomes_project 3 129358925 129365716 - MGP_C3HHeJ_P0063327 Alpk1 protein_coding protein_coding MGP_C3HHeJ_T0063328.1 MGP_C3HHeJ_G0027564.1 mouse_genomes_project 3 129405593 129452694 - Alpk1 protein_coding retained_intron MGP_C3HHeJ_T0063329.1 MGP_C3HHeJ_G0027564.1 mouse_genomes_project 3 129434354 129452671 - Alpk1 protein_coding processed_transcript MGP_C3HHeJ_T0004217.1 MGP_C3HHeJ_G0003701.1 mouse_genomes_project 3 95140350 95142937 - A730011C13Rik antisense antisense MGP_C3HHeJ_T0004218.1 MGP_C3HHeJ_G0003701.1 mouse_genomes_project 3 95140983 95143291 - A730011C13Rik antisense antisense MGP_C3HHeJ_T0013749.1 MGP_C3HHeJ_G0011853.1 mouse_genomes_project 3 4618193 4618313 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001129.1 MGP_C3HHeJ_G0001063.1 mouse_genomes_project 3 38893838 38897498 + TEC TEC MGP_C3HHeJ_T0013838.1 MGP_C3HHeJ_G0011942.1 mouse_genomes_project 3 34527330 34527582 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098460.1 MGP_C3HHeJ_G0036665.1 mouse_genomes_project 3 106654338 106656027 - Gm43331 sense_intronic sense_intronic MGP_C3HHeJ_T0060622.1 MGP_C3HHeJ_G0026963.1 mouse_genomes_project 3 57760117 57787332 - MGP_C3HHeJ_P0060622 Igsf10 protein_coding protein_coding MGP_C3HHeJ_T0060623.1 MGP_C3HHeJ_G0026963.1 mouse_genomes_project 3 57761308 57787235 - MGP_C3HHeJ_P0060623 Igsf10 protein_coding protein_coding MGP_C3HHeJ_T0060624.1 MGP_C3HHeJ_G0026963.1 mouse_genomes_project 3 57761308 57787470 - MGP_C3HHeJ_P0060624 Igsf10 protein_coding protein_coding MGP_C3HHeJ_T0060625.1 MGP_C3HHeJ_G0026963.1 mouse_genomes_project 3 57782846 57787332 - MGP_C3HHeJ_P0060625 Igsf10 protein_coding protein_coding MGP_C3HHeJ_T0013906.1 MGP_C3HHeJ_G0012010.1 mouse_genomes_project 3 56201110 56201606 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007681.1 MGP_C3HHeJ_G0006279.1 mouse_genomes_project 3 151730391 151894348 - Gm30382 lincRNA lincRNA MGP_C3HHeJ_T0007682.1 MGP_C3HHeJ_G0006279.1 mouse_genomes_project 3 151730849 151770794 - Gm30382 lincRNA lincRNA MGP_C3HHeJ_T0007684.1 MGP_C3HHeJ_G0006279.1 mouse_genomes_project 3 151760061 151894373 - Gm30382 lincRNA lincRNA MGP_C3HHeJ_T0060027.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30199636 30248450 + MGP_C3HHeJ_P0060027 Mfn1 protein_coding protein_coding MGP_C3HHeJ_T0060028.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30199702 30217202 + Mfn1 protein_coding retained_intron MGP_C3HHeJ_T0060029.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30199710 30216915 + MGP_C3HHeJ_P0060029 Mfn1 protein_coding protein_coding MGP_C3HHeJ_T0060030.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30201700 30214353 + MGP_C3HHeJ_P0060030 Mfn1 protein_coding protein_coding MGP_C3HHeJ_T0060031.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30201709 30246568 + MGP_C3HHeJ_P0060031 Mfn1 protein_coding protein_coding MGP_C3HHeJ_T0060032.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30216750 30232404 + Mfn1 protein_coding retained_intron MGP_C3HHeJ_T0060033.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30223389 30232673 + Mfn1 protein_coding retained_intron MGP_C3HHeJ_T0060034.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30230816 30239658 + MGP_C3HHeJ_P0060034 Mfn1 protein_coding protein_coding MGP_C3HHeJ_T0060035.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30232177 30233071 + Mfn1 protein_coding retained_intron MGP_C3HHeJ_T0060036.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30243509 30246372 + Mfn1 protein_coding retained_intron MGP_C3HHeJ_T0062771.1 MGP_C3HHeJ_G0027459.1 mouse_genomes_project 3 108869070 108871936 + MGP_C3HHeJ_P0062771 Gstm5 protein_coding protein_coding MGP_C3HHeJ_T0062772.1 MGP_C3HHeJ_G0027459.1 mouse_genomes_project 3 108869085 108871825 + MGP_C3HHeJ_P0062772 Gstm5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062773.1 MGP_C3HHeJ_G0027459.1 mouse_genomes_project 3 108869095 108871936 + MGP_C3HHeJ_P0062773 Gstm5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062774.1 MGP_C3HHeJ_G0027459.1 mouse_genomes_project 3 108869190 108871595 + MGP_C3HHeJ_P0062774 Gstm5 protein_coding protein_coding MGP_C3HHeJ_T0062775.1 MGP_C3HHeJ_G0027459.1 mouse_genomes_project 3 108869203 108871799 + MGP_C3HHeJ_P0062775 Gstm5 protein_coding protein_coding MGP_C3HHeJ_T0062776.1 MGP_C3HHeJ_G0027459.1 mouse_genomes_project 3 108869496 108871928 + MGP_C3HHeJ_P0062776 Gstm5 protein_coding protein_coding MGP_C3HHeJ_T0060009.1 MGP_C3HHeJ_G0026849.1 mouse_genomes_project 3 29549226 29854435 + MGP_C3HHeJ_P0060009 Kcnmb2 protein_coding protein_coding MGP_C3HHeJ_T0060010.1 MGP_C3HHeJ_G0026849.1 mouse_genomes_project 3 29817106 29853030 + MGP_C3HHeJ_P0060010 Kcnmb2 protein_coding protein_coding MGP_C3HHeJ_T0061770.1 MGP_C3HHeJ_G0027198.1 mouse_genomes_project 3 90734843 90737705 - MGP_C3HHeJ_P0061770 9130204L05Rik protein_coding protein_coding MGP_C3HHeJ_T0004154.1 MGP_C3HHeJ_G0003652.1 mouse_genomes_project 3 34016520 34018855 + Gm43255 antisense antisense MGP_C3HHeJ_T0063825.1 MGP_C3HHeJ_G0027664.1 mouse_genomes_project 3 148252742 148255110 + Bcl10 protein_coding retained_intron MGP_C3HHeJ_T0063826.1 MGP_C3HHeJ_G0027664.1 mouse_genomes_project 3 148254200 148265437 + MGP_C3HHeJ_P0063826 Bcl10 protein_coding protein_coding MGP_C3HHeJ_T0063827.1 MGP_C3HHeJ_G0027664.1 mouse_genomes_project 3 148254295 148257870 + Bcl10 protein_coding processed_transcript MGP_C3HHeJ_T0001303.1 MGP_C3HHeJ_G0001235.1 mouse_genomes_project 3 129507200 129510609 - TEC TEC MGP_C3HHeJ_T0061788.1 MGP_C3HHeJ_G0027215.1 mouse_genomes_project 3 92359557 92359788 - MGP_C3HHeJ_P0061788 Sprr4 protein_coding protein_coding MGP_C3HHeJ_T0061524.1 MGP_C3HHeJ_G0027151.1 mouse_genomes_project 3 88947027 88948833 - MGP_C3HHeJ_P0061524 Lenep protein_coding protein_coding MGP_C3HHeJ_T0010421.1 MGP_C3HHeJ_G0008554.1 mouse_genomes_project 3 28625166 28625229 + Mir7008 miRNA miRNA MGP_C3HHeJ_T0007372.1 MGP_C3HHeJ_G0006040.1 mouse_genomes_project 3 10839871 10841252 - Gm2464 lincRNA lincRNA MGP_C3HHeJ_T0001238.1 MGP_C3HHeJ_G0001170.1 mouse_genomes_project 3 97613437 97614626 - TEC TEC MGP_C3HHeJ_T0059834.1 MGP_C3HHeJ_G0026815.1 mouse_genomes_project 3 17588328 17591025 - Cpb1 protein_coding retained_intron MGP_C3HHeJ_T0059835.1 MGP_C3HHeJ_G0026815.1 mouse_genomes_project 3 17588353 17615281 - MGP_C3HHeJ_P0059835 Cpb1 protein_coding protein_coding MGP_C3HHeJ_T0059836.1 MGP_C3HHeJ_G0026815.1 mouse_genomes_project 3 17603737 17605992 - Cpb1 protein_coding processed_transcript MGP_C3HHeJ_T0060830.1 MGP_C3HHeJ_G0027013.1 mouse_genomes_project 3 68442962 68471516 - MGP_C3HHeJ_P0060830 B3galnt1 protein_coding protein_coding MGP_C3HHeJ_T0001150.1 MGP_C3HHeJ_G0001084.1 mouse_genomes_project 3 49414707 49417041 + TEC TEC MGP_C3HHeJ_T0061956.1 MGP_C3HHeJ_G0027271.1 mouse_genomes_project 3 95272012 95284509 + MGP_C3HHeJ_P0061956 Vps72 protein_coding protein_coding MGP_C3HHeJ_T0061957.1 MGP_C3HHeJ_G0027271.1 mouse_genomes_project 3 95272032 95279733 + Vps72 protein_coding processed_transcript MGP_C3HHeJ_T0061958.1 MGP_C3HHeJ_G0027271.1 mouse_genomes_project 3 95272063 95284179 + Vps72 protein_coding processed_transcript MGP_C3HHeJ_T0061959.1 MGP_C3HHeJ_G0027271.1 mouse_genomes_project 3 95276264 95280545 + Vps72 protein_coding processed_transcript MGP_C3HHeJ_T0061960.1 MGP_C3HHeJ_G0027271.1 mouse_genomes_project 3 95278126 95280664 + Vps72 protein_coding retained_intron MGP_C3HHeJ_T0007669.1 MGP_C3HHeJ_G0006269.1 mouse_genomes_project 3 146456029 146457125 + Gm43446 lincRNA lincRNA MGP_C3HHeJ_T0010422.1 MGP_C3HHeJ_G0008555.1 mouse_genomes_project 3 30958535 30958640 - Gm27974 miRNA miRNA MGP_C3HHeJ_T0101979.1 MGP_C3HHeJ_G0039944.1 mouse_genomes_project 3 123666007 123780061 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001080.1 MGP_C3HHeJ_G0001014.1 mouse_genomes_project 3 7998280 8000067 + TEC TEC MGP_C3HHeJ_T0001321.1 MGP_C3HHeJ_G0001252.1 mouse_genomes_project 3 134611994 134615209 + TEC TEC MGP_C3HHeJ_T0007552.1 MGP_C3HHeJ_G0006173.1 mouse_genomes_project 3 99606683 99610606 + Gm12440 lincRNA lincRNA MGP_C3HHeJ_T0098468.1 MGP_C3HHeJ_G0036673.1 mouse_genomes_project 3 156099247 156110242 - 1700015C17Rik sense_intronic sense_intronic MGP_C3HHeJ_T0059743.1 MGP_C3HHeJ_G0026790.1 mouse_genomes_project 3 12174854 12187641 - MGP_C3HHeJ_P0059743 Car1 protein_coding protein_coding MGP_C3HHeJ_T0059744.1 MGP_C3HHeJ_G0026790.1 mouse_genomes_project 3 12174854 12225261 - MGP_C3HHeJ_P0059744 Car1 protein_coding protein_coding MGP_C3HHeJ_T0059745.1 MGP_C3HHeJ_G0026790.1 mouse_genomes_project 3 12179003 12225264 - MGP_C3HHeJ_P0059745 Car1 protein_coding protein_coding MGP_C3HHeJ_T0100526.1 MGP_C3HHeJ_G0038720.1 mouse_genomes_project 3 25389477 25389638 + Gm26040 snoRNA snoRNA MGP_C3HHeJ_T0062640.1 MGP_C3HHeJ_G0027424.1 mouse_genomes_project 3 106738089 106739819 + Tmigd3 protein_coding processed_transcript MGP_C3HHeJ_T0062641.1 MGP_C3HHeJ_G0027424.1 mouse_genomes_project 3 106738093 106794888 + MGP_C3HHeJ_P0062641 Tmigd3 protein_coding protein_coding MGP_C3HHeJ_T0062642.1 MGP_C3HHeJ_G0027424.1 mouse_genomes_project 3 106738093 106794807 + MGP_C3HHeJ_P0062642 Tmigd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062643.1 MGP_C3HHeJ_G0027424.1 mouse_genomes_project 3 106738163 106739049 + Tmigd3 protein_coding processed_transcript MGP_C3HHeJ_T0062645.1 MGP_C3HHeJ_G0027424.1 mouse_genomes_project 3 106771604 106787857 + MGP_C3HHeJ_P0062645 Tmigd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062647.1 MGP_C3HHeJ_G0027424.1 mouse_genomes_project 3 106783460 106794891 + MGP_C3HHeJ_P0062647 Tmigd3 protein_coding protein_coding MGP_C3HHeJ_T0062648.1 MGP_C3HHeJ_G0027424.1 mouse_genomes_project 3 106783460 106794894 + MGP_C3HHeJ_P0062648 Tmigd3 protein_coding protein_coding MGP_C3HHeJ_T0013996.1 MGP_C3HHeJ_G0012100.1 mouse_genomes_project 3 85677316 85678299 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004246.1 MGP_C3HHeJ_G0003719.1 mouse_genomes_project 3 103506518 103507932 - Gm42681 antisense antisense MGP_C3HHeJ_T0014039.1 MGP_C3HHeJ_G0012143.1 mouse_genomes_project 3 96964831 96965311 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062717.1 MGP_C3HHeJ_G0027442.1 mouse_genomes_project 3 108044547 108050964 + MGP_C3HHeJ_P0062717 Kcna2 protein_coding protein_coding MGP_C3HHeJ_T0062718.1 MGP_C3HHeJ_G0027442.1 mouse_genomes_project 3 108044968 108058329 + MGP_C3HHeJ_P0062718 Kcna2 protein_coding protein_coding MGP_C3HHeJ_T0062719.1 MGP_C3HHeJ_G0027442.1 mouse_genomes_project 3 108046083 108049373 + MGP_C3HHeJ_P0062719 Kcna2 protein_coding protein_coding MGP_C3HHeJ_T0062210.1 MGP_C3HHeJ_G0027324.1 mouse_genomes_project 3 96862479 96866167 + MGP_C3HHeJ_P0062210 Gm16253 protein_coding protein_coding MGP_C3HHeJ_T0013972.1 MGP_C3HHeJ_G0012076.1 mouse_genomes_project 3 76064932 76065762 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062924.1 MGP_C3HHeJ_G0027492.1 mouse_genomes_project 3 109975826 109976219 - MGP_C3HHeJ_P0062924 Gm9857 protein_coding protein_coding MGP_C3HHeJ_T0013746.1 MGP_C3HHeJ_G0011850.1 mouse_genomes_project 3 3633943 3634925 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098429.1 MGP_C3HHeJ_G0036634.1 mouse_genomes_project 3 103195986 103198892 + Gm42679 sense_intronic sense_intronic MGP_C3HHeJ_T0007588.1 MGP_C3HHeJ_G0006203.1 mouse_genomes_project 3 117958564 117958988 + 4930512P04Rik lincRNA lincRNA MGP_C3HHeJ_T0100534.1 MGP_C3HHeJ_G0038728.1 mouse_genomes_project 3 45273911 45274049 + Gm23891 snoRNA snoRNA MGP_C3HHeJ_T0062334.1 MGP_C3HHeJ_G0027355.1 mouse_genomes_project 3 98689315 98723661 - MGP_C3HHeJ_P0062334 protein_coding protein_coding MGP_C3HHeJ_T0062335.1 MGP_C3HHeJ_G0027355.1 mouse_genomes_project 3 98696547 98717248 - protein_coding retained_intron MGP_C3HHeJ_T0062336.1 MGP_C3HHeJ_G0027355.1 mouse_genomes_project 3 98697082 98705210 - protein_coding retained_intron MGP_C3HHeJ_T0062337.1 MGP_C3HHeJ_G0027355.1 mouse_genomes_project 3 98697189 98721219 - MGP_C3HHeJ_P0062337 protein_coding protein_coding MGP_C3HHeJ_T0013740.1 MGP_C3HHeJ_G0011844.1 mouse_genomes_project 3 1042026 1042345 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060006.1 MGP_C3HHeJ_G0026847.1 mouse_genomes_project 3 28812446 28920346 - MGP_C3HHeJ_P0060006 Slc7a14 protein_coding protein_coding MGP_C3HHeJ_T0060007.1 MGP_C3HHeJ_G0026847.1 mouse_genomes_project 3 28832279 28868234 - MGP_C3HHeJ_P0060007 Slc7a14 protein_coding protein_coding MGP_C3HHeJ_T0098454.1 MGP_C3HHeJ_G0036659.1 mouse_genomes_project 3 105685646 105687410 - Gm42659 sense_intronic sense_intronic MGP_C3HHeJ_T0099304.1 MGP_C3HHeJ_G0037498.1 mouse_genomes_project 3 124990610 124990740 - Gm22713 snRNA snRNA MGP_C3HHeJ_T0099259.1 MGP_C3HHeJ_G0037453.1 mouse_genomes_project 3 62378616 62378714 + Gm23500 snRNA snRNA MGP_C3HHeJ_T0063779.1 MGP_C3HHeJ_G0027653.1 mouse_genomes_project 3 147034450 147101765 - MGP_C3HHeJ_P0063779 protein_coding protein_coding MGP_C3HHeJ_T0063781.1 MGP_C3HHeJ_G0027653.1 mouse_genomes_project 3 147040050 147043529 - MGP_C3HHeJ_P0063781 protein_coding protein_coding MGP_C3HHeJ_T0063782.1 MGP_C3HHeJ_G0027653.1 mouse_genomes_project 3 147040277 147062053 - MGP_C3HHeJ_P0063782 protein_coding protein_coding MGP_C3HHeJ_T0063783.1 MGP_C3HHeJ_G0027653.1 mouse_genomes_project 3 147070006 147071672 - protein_coding retained_intron MGP_C3HHeJ_T0063102.1 MGP_C3HHeJ_G0027528.1 mouse_genomes_project 3 122647101 122663578 - MGP_C3HHeJ_P0063102 Rwdd3 protein_coding protein_coding MGP_C3HHeJ_T0063103.1 MGP_C3HHeJ_G0027528.1 mouse_genomes_project 3 122647103 122648524 - Rwdd3 protein_coding retained_intron MGP_C3HHeJ_T0063104.1 MGP_C3HHeJ_G0027528.1 mouse_genomes_project 3 122647546 122650570 - MGP_C3HHeJ_P0063104 Rwdd3 protein_coding protein_coding MGP_C3HHeJ_T0063105.1 MGP_C3HHeJ_G0027528.1 mouse_genomes_project 3 122647549 122663571 - MGP_C3HHeJ_P0063105 Rwdd3 protein_coding protein_coding MGP_C3HHeJ_T0063106.1 MGP_C3HHeJ_G0027528.1 mouse_genomes_project 3 122647568 122663577 - MGP_C3HHeJ_P0063106 Rwdd3 protein_coding protein_coding MGP_C3HHeJ_T0063107.1 MGP_C3HHeJ_G0027528.1 mouse_genomes_project 3 122647642 122663577 - MGP_C3HHeJ_P0063107 Rwdd3 protein_coding protein_coding MGP_C3HHeJ_T0063108.1 MGP_C3HHeJ_G0027528.1 mouse_genomes_project 3 122647981 122663578 - MGP_C3HHeJ_P0063108 Rwdd3 protein_coding protein_coding MGP_C3HHeJ_T0063109.1 MGP_C3HHeJ_G0027528.1 mouse_genomes_project 3 122649722 122663578 - Rwdd3 protein_coding retained_intron MGP_C3HHeJ_T0063110.1 MGP_C3HHeJ_G0027528.1 mouse_genomes_project 3 122661052 122663577 - Rwdd3 protein_coding retained_intron MGP_C3HHeJ_T0062460.1 MGP_C3HHeJ_G0027388.1 mouse_genomes_project 3 103725681 103738374 + MGP_C3HHeJ_P0062460 Sike1 protein_coding protein_coding MGP_C3HHeJ_T0062461.1 MGP_C3HHeJ_G0027388.1 mouse_genomes_project 3 103725703 103729225 + Sike1 protein_coding retained_intron MGP_C3HHeJ_T0062462.1 MGP_C3HHeJ_G0027388.1 mouse_genomes_project 3 103725768 103732109 + MGP_C3HHeJ_P0062462 Sike1 protein_coding protein_coding MGP_C3HHeJ_T0062463.1 MGP_C3HHeJ_G0027388.1 mouse_genomes_project 3 103726022 103727325 + Sike1 protein_coding retained_intron MGP_C3HHeJ_T0062464.1 MGP_C3HHeJ_G0027388.1 mouse_genomes_project 3 103726149 103731751 + MGP_C3HHeJ_P0062464 Sike1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062465.1 MGP_C3HHeJ_G0027388.1 mouse_genomes_project 3 103726701 103729212 + Sike1 protein_coding retained_intron MGP_C3HHeJ_T0060447.1 MGP_C3HHeJ_G0026926.1 mouse_genomes_project 3 52464987 52490823 + Trpc4 protein_coding processed_transcript MGP_C3HHeJ_T0060448.1 MGP_C3HHeJ_G0026926.1 mouse_genomes_project 3 52465018 52587406 + Trpc4 protein_coding retained_intron MGP_C3HHeJ_T0060449.1 MGP_C3HHeJ_G0026926.1 mouse_genomes_project 3 52465056 52637754 + MGP_C3HHeJ_P0060449 Trpc4 protein_coding protein_coding MGP_C3HHeJ_T0060450.1 MGP_C3HHeJ_G0026926.1 mouse_genomes_project 3 52465325 52543808 + Trpc4 protein_coding retained_intron MGP_C3HHeJ_T0060451.1 MGP_C3HHeJ_G0026926.1 mouse_genomes_project 3 52465527 52637442 + MGP_C3HHeJ_P0060451 Trpc4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0060452.1 MGP_C3HHeJ_G0026926.1 mouse_genomes_project 3 52465567 52637702 + MGP_C3HHeJ_P0060452 Trpc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061800.1 MGP_C3HHeJ_G0027225.1 mouse_genomes_project 3 92550182 92551894 - MGP_C3HHeJ_P0061800 Lce1d protein_coding protein_coding MGP_C3HHeJ_T0061171.1 MGP_C3HHeJ_G0027091.1 mouse_genomes_project 3 87436587 87447615 + MGP_C3HHeJ_P0061171 Isg20l2 protein_coding protein_coding MGP_C3HHeJ_T0001260.1 MGP_C3HHeJ_G0001192.1 mouse_genomes_project 3 119944954 119947674 + TEC TEC MGP_C3HHeJ_T0061286.1 MGP_C3HHeJ_G0027115.1 mouse_genomes_project 3 88088791 88095271 - MGP_C3HHeJ_P0061286 Rab25 protein_coding protein_coding MGP_C3HHeJ_T0061287.1 MGP_C3HHeJ_G0027115.1 mouse_genomes_project 3 88089071 88095220 - MGP_C3HHeJ_P0061287 Rab25 protein_coding protein_coding MGP_C3HHeJ_T0061288.1 MGP_C3HHeJ_G0027115.1 mouse_genomes_project 3 88089438 88090277 - Rab25 protein_coding retained_intron MGP_C3HHeJ_T0061289.1 MGP_C3HHeJ_G0027115.1 mouse_genomes_project 3 88091404 88095253 - Rab25 protein_coding retained_intron MGP_C3HHeJ_T0010417.1 MGP_C3HHeJ_G0008550.1 mouse_genomes_project 3 25076505 25076601 - Mir3092 miRNA miRNA MGP_C3HHeJ_T0061573.1 MGP_C3HHeJ_G0027162.1 mouse_genomes_project 3 89395516 89422741 + MGP_C3HHeJ_P0061573 She protein_coding protein_coding MGP_C3HHeJ_T0061574.1 MGP_C3HHeJ_G0027162.1 mouse_genomes_project 3 89401793 89403284 + She protein_coding retained_intron MGP_C3HHeJ_T0098431.1 MGP_C3HHeJ_G0036636.1 mouse_genomes_project 3 104103119 104105360 + Gm43061 sense_intronic sense_intronic MGP_C3HHeJ_T0060359.1 MGP_C3HHeJ_G0026907.1 mouse_genomes_project 3 48085361 48653906 - MGP_C3HHeJ_P0060359 Slc7a11 protein_coding protein_coding MGP_C3HHeJ_T0060360.1 MGP_C3HHeJ_G0026907.1 mouse_genomes_project 3 48574400 48653903 - MGP_C3HHeJ_P0060360 Slc7a11 protein_coding protein_coding MGP_C3HHeJ_T0060361.1 MGP_C3HHeJ_G0026907.1 mouse_genomes_project 3 48579311 48580262 - Slc7a11 protein_coding processed_transcript MGP_C3HHeJ_T0060362.1 MGP_C3HHeJ_G0026907.1 mouse_genomes_project 3 48626266 48653906 - Slc7a11 protein_coding retained_intron MGP_C3HHeJ_T0060363.1 MGP_C3HHeJ_G0026907.1 mouse_genomes_project 3 48651221 48653897 - Slc7a11 protein_coding retained_intron MGP_C3HHeJ_T0100586.1 MGP_C3HHeJ_G0038780.1 mouse_genomes_project 3 145826715 145826840 + Gm24728 snoRNA snoRNA MGP_C3HHeJ_T0062934.1 MGP_C3HHeJ_G0027495.1 mouse_genomes_project 3 110170374 110217749 + MGP_C3HHeJ_P0062934 Slc25a24 protein_coding protein_coding MGP_C3HHeJ_T0062935.1 MGP_C3HHeJ_G0027495.1 mouse_genomes_project 3 110170387 110207824 + MGP_C3HHeJ_P0062935 Slc25a24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063785.1 MGP_C3HHeJ_G0027655.1 mouse_genomes_project 3 147119465 147246599 - MGP_C3HHeJ_P0063785 Clca4a protein_coding protein_coding MGP_C3HHeJ_T0063453.1 MGP_C3HHeJ_G0027589.1 mouse_genomes_project 3 133330358 133418134 + MGP_C3HHeJ_P0063453 Papss1 protein_coding protein_coding MGP_C3HHeJ_T0063454.1 MGP_C3HHeJ_G0027589.1 mouse_genomes_project 3 133330455 133418133 + MGP_C3HHeJ_P0063454 Papss1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063455.1 MGP_C3HHeJ_G0027589.1 mouse_genomes_project 3 133330486 133418133 + MGP_C3HHeJ_P0063455 Papss1 protein_coding protein_coding MGP_C3HHeJ_T0063456.1 MGP_C3HHeJ_G0027589.1 mouse_genomes_project 3 133330489 133418134 + MGP_C3HHeJ_P0063456 Papss1 protein_coding protein_coding MGP_C3HHeJ_T0063457.1 MGP_C3HHeJ_G0027589.1 mouse_genomes_project 3 133330525 133349919 + MGP_C3HHeJ_P0063457 Papss1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001189.1 MGP_C3HHeJ_G0001121.1 mouse_genomes_project 3 56009843 56013798 - TEC TEC MGP_C3HHeJ_T0101966.1 MGP_C3HHeJ_G0039931.1 mouse_genomes_project 3 94342377 94342570 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100592.1 MGP_C3HHeJ_G0038786.1 mouse_genomes_project 3 156567789 156567860 - Snord45b snoRNA snoRNA MGP_C3HHeJ_T0007589.1 MGP_C3HHeJ_G0006204.1 mouse_genomes_project 3 118405309 118421898 - 1700061I17Rik lincRNA lincRNA MGP_C3HHeJ_T0004236.1 MGP_C3HHeJ_G0003712.1 mouse_genomes_project 3 97308587 97310637 - 9230114J08Rik antisense antisense MGP_C3HHeJ_T0001274.1 MGP_C3HHeJ_G0001206.1 mouse_genomes_project 3 124140543 124143092 - TEC TEC MGP_C3HHeJ_T0001335.1 MGP_C3HHeJ_G0001266.1 mouse_genomes_project 3 145795968 145802014 + TEC TEC MGP_C3HHeJ_T0004244.1 MGP_C3HHeJ_G0003717.1 mouse_genomes_project 3 102910680 102912868 + Gm16160 antisense antisense MGP_C3HHeJ_T0059682.1 MGP_C3HHeJ_G0026769.1 mouse_genomes_project 3 6534589 6568524 + MGP_C3HHeJ_P0059682 Zbtb10 protein_coding protein_coding MGP_C3HHeJ_T0004143.1 MGP_C3HHeJ_G0003645.1 mouse_genomes_project 3 30177800 30178342 - Gm37592 antisense antisense MGP_C3HHeJ_T0013827.1 MGP_C3HHeJ_G0011931.1 mouse_genomes_project 3 31445152 31448098 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007630.1 MGP_C3HHeJ_G0006236.1 mouse_genomes_project 3 136036438 136048282 + Gm43194 lincRNA lincRNA MGP_C3HHeJ_T0007631.1 MGP_C3HHeJ_G0006236.1 mouse_genomes_project 3 136036576 136049769 + Gm43194 lincRNA lincRNA MGP_C3HHeJ_T0061779.1 MGP_C3HHeJ_G0027207.1 mouse_genomes_project 3 92235582 92237142 + MGP_C3HHeJ_P0061779 Sprr2h protein_coding protein_coding MGP_C3HHeJ_T0061780.1 MGP_C3HHeJ_G0027207.1 mouse_genomes_project 3 92235597 92236917 + MGP_C3HHeJ_P0061780 Sprr2h protein_coding protein_coding MGP_C3HHeJ_T0062198.1 MGP_C3HHeJ_G0027319.1 mouse_genomes_project 3 96523738 96524119 + MGP_C3HHeJ_P0062198 Hist2h2bb protein_coding protein_coding MGP_C3HHeJ_T0014179.1 MGP_C3HHeJ_G0012283.1 mouse_genomes_project 3 140594098 140594873 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099237.1 MGP_C3HHeJ_G0037431.1 mouse_genomes_project 3 15080891 15081018 - Gm23441 snRNA snRNA MGP_C3HHeJ_T0061841.1 MGP_C3HHeJ_G0027253.1 mouse_genomes_project 3 94436693 94462773 + MGP_C3HHeJ_P0061841 Rorc protein_coding protein_coding MGP_C3HHeJ_T0061842.1 MGP_C3HHeJ_G0027253.1 mouse_genomes_project 3 94441318 94463209 + MGP_C3HHeJ_P0061842 Rorc protein_coding protein_coding MGP_C3HHeJ_T0061843.1 MGP_C3HHeJ_G0027253.1 mouse_genomes_project 3 94441346 94462579 + Rorc protein_coding retained_intron MGP_C3HHeJ_T0061844.1 MGP_C3HHeJ_G0027253.1 mouse_genomes_project 3 94441402 94462581 + MGP_C3HHeJ_P0061844 Rorc protein_coding protein_coding MGP_C3HHeJ_T0060120.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33697178 33734083 - MGP_C3HHeJ_P0060120 Dcun1d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060121.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33697488 33734034 - MGP_C3HHeJ_P0060121 Dcun1d1 protein_coding protein_coding MGP_C3HHeJ_T0060122.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33697514 33722493 - MGP_C3HHeJ_P0060122 Dcun1d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060123.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33699802 33733581 - MGP_C3HHeJ_P0060123 Dcun1d1 protein_coding protein_coding MGP_C3HHeJ_T0060124.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33699866 33711361 - Dcun1d1 protein_coding processed_transcript MGP_C3HHeJ_T0060125.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33710659 33734062 - Dcun1d1 protein_coding processed_transcript MGP_C3HHeJ_T0060126.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33717460 33734071 - Dcun1d1 protein_coding retained_intron MGP_C3HHeJ_T0060127.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33720312 33731366 - MGP_C3HHeJ_P0060127 Dcun1d1 protein_coding protein_coding MGP_C3HHeJ_T0060128.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33720315 33738678 - MGP_C3HHeJ_P0060128 Dcun1d1 protein_coding protein_coding MGP_C3HHeJ_T0060129.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33729779 33732705 - Dcun1d1 protein_coding retained_intron MGP_C3HHeJ_T0013875.1 MGP_C3HHeJ_G0011979.1 mouse_genomes_project 3 46166313 46167063 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063950.1 MGP_C3HHeJ_G0027688.1 mouse_genomes_project 3 154773181 154806392 - Dnajb4 protein_coding processed_transcript MGP_C3HHeJ_T0063951.1 MGP_C3HHeJ_G0027688.1 mouse_genomes_project 3 154778625 154789570 - MGP_C3HHeJ_P0063951 Dnajb4 protein_coding protein_coding MGP_C3HHeJ_T0063952.1 MGP_C3HHeJ_G0027688.1 mouse_genomes_project 3 154778652 154806196 - MGP_C3HHeJ_P0063952 Dnajb4 protein_coding protein_coding MGP_C3HHeJ_T0063953.1 MGP_C3HHeJ_G0027688.1 mouse_genomes_project 3 154779755 154806132 - MGP_C3HHeJ_P0063953 Dnajb4 protein_coding protein_coding MGP_C3HHeJ_T0063954.1 MGP_C3HHeJ_G0027688.1 mouse_genomes_project 3 154789101 154806170 - Dnajb4 protein_coding processed_transcript MGP_C3HHeJ_T0063955.1 MGP_C3HHeJ_G0027688.1 mouse_genomes_project 3 154789287 154806170 - MGP_C3HHeJ_P0063955 Dnajb4 protein_coding protein_coding MGP_C3HHeJ_T0063956.1 MGP_C3HHeJ_G0027688.1 mouse_genomes_project 3 154801501 154806415 - Dnajb4 protein_coding retained_intron MGP_C3HHeJ_T0001091.1 MGP_C3HHeJ_G0001025.1 mouse_genomes_project 3 25847807 25849513 + TEC TEC MGP_C3HHeJ_T0098418.1 MGP_C3HHeJ_G0036623.1 mouse_genomes_project 3 101203041 101208256 - Gm43466 sense_intronic sense_intronic MGP_C3HHeJ_T0062338.1 MGP_C3HHeJ_G0027356.1 mouse_genomes_project 3 98772538 99282971 + Zfp697 protein_coding processed_transcript MGP_C3HHeJ_T0062339.1 MGP_C3HHeJ_G0027356.1 mouse_genomes_project 3 98772558 98803974 + Zfp697 protein_coding processed_transcript MGP_C3HHeJ_T0062340.1 MGP_C3HHeJ_G0027356.1 mouse_genomes_project 3 98772558 98823205 + MGP_C3HHeJ_P0062340 Zfp697 protein_coding protein_coding MGP_C3HHeJ_T0062341.1 MGP_C3HHeJ_G0027356.1 mouse_genomes_project 3 98772625 98822968 + MGP_C3HHeJ_P0062341 Zfp697 protein_coding protein_coding MGP_C3HHeJ_T0007673.1 MGP_C3HHeJ_G0006272.1 mouse_genomes_project 3 148380316 148382389 + Gm43861 lincRNA lincRNA MGP_C3HHeJ_T0059717.1 MGP_C3HHeJ_G0026783.1 mouse_genomes_project 3 7763955 7786054 - MGP_C3HHeJ_P0059717 Snx16 protein_coding protein_coding MGP_C3HHeJ_T0059718.1 MGP_C3HHeJ_G0026783.1 mouse_genomes_project 3 7764284 7786039 - MGP_C3HHeJ_P0059718 Snx16 protein_coding protein_coding MGP_C3HHeJ_T0059719.1 MGP_C3HHeJ_G0026783.1 mouse_genomes_project 3 7765075 7786052 - MGP_C3HHeJ_P0059719 Snx16 protein_coding protein_coding MGP_C3HHeJ_T0001328.1 MGP_C3HHeJ_G0001259.1 mouse_genomes_project 3 137784729 137786980 + TEC TEC MGP_C3HHeJ_T0061041.1 MGP_C3HHeJ_G0027064.1 mouse_genomes_project 3 84182328 84350313 + MGP_C3HHeJ_P0061041 Fbxw7 protein_coding protein_coding MGP_C3HHeJ_T0061042.1 MGP_C3HHeJ_G0027064.1 mouse_genomes_project 3 84182538 84348797 + Fbxw7 protein_coding retained_intron MGP_C3HHeJ_T0061043.1 MGP_C3HHeJ_G0027064.1 mouse_genomes_project 3 84233874 84350313 + MGP_C3HHeJ_P0061043 Fbxw7 protein_coding protein_coding MGP_C3HHeJ_T0061044.1 MGP_C3HHeJ_G0027064.1 mouse_genomes_project 3 84296813 84350312 + MGP_C3HHeJ_P0061044 Fbxw7 protein_coding protein_coding MGP_C3HHeJ_T0061045.1 MGP_C3HHeJ_G0027064.1 mouse_genomes_project 3 84323342 84348760 + MGP_C3HHeJ_P0061045 Fbxw7 protein_coding protein_coding MGP_C3HHeJ_T0061183.1 MGP_C3HHeJ_G0027095.1 mouse_genomes_project 3 87541810 87547643 - Hapln2 protein_coding retained_intron MGP_C3HHeJ_T0061184.1 MGP_C3HHeJ_G0027095.1 mouse_genomes_project 3 87542121 87547538 - MGP_C3HHeJ_P0061184 Hapln2 protein_coding protein_coding MGP_C3HHeJ_T0061185.1 MGP_C3HHeJ_G0027095.1 mouse_genomes_project 3 87542698 87543734 - Hapln2 protein_coding retained_intron MGP_C3HHeJ_T0061186.1 MGP_C3HHeJ_G0027095.1 mouse_genomes_project 3 87543594 87547552 - MGP_C3HHeJ_P0061186 Hapln2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063492.1 MGP_C3HHeJ_G0027598.1 mouse_genomes_project 3 135109049 135184450 + MGP_C3HHeJ_P0063492 Ppa2 protein_coding protein_coding MGP_C3HHeJ_T0063493.1 MGP_C3HHeJ_G0027598.1 mouse_genomes_project 3 135109061 135184607 + MGP_C3HHeJ_P0063493 Ppa2 protein_coding protein_coding MGP_C3HHeJ_T0063494.1 MGP_C3HHeJ_G0027598.1 mouse_genomes_project 3 135109421 135176812 + Ppa2 protein_coding processed_transcript MGP_C3HHeJ_T0063495.1 MGP_C3HHeJ_G0027598.1 mouse_genomes_project 3 135120412 135125512 + Ppa2 protein_coding retained_intron MGP_C3HHeJ_T0063496.1 MGP_C3HHeJ_G0027598.1 mouse_genomes_project 3 135138465 135174294 + Ppa2 protein_coding processed_transcript MGP_C3HHeJ_T0063497.1 MGP_C3HHeJ_G0027598.1 mouse_genomes_project 3 135138638 135184454 + Ppa2 protein_coding retained_intron MGP_C3HHeJ_T0063498.1 MGP_C3HHeJ_G0027598.1 mouse_genomes_project 3 135150292 135184439 + MGP_C3HHeJ_P0063498 Ppa2 protein_coding protein_coding MGP_C3HHeJ_T0063499.1 MGP_C3HHeJ_G0027598.1 mouse_genomes_project 3 135178778 135180812 + Ppa2 protein_coding retained_intron MGP_C3HHeJ_T0060745.1 MGP_C3HHeJ_G0026993.1 mouse_genomes_project 3 65053668 65059564 + MGP_C3HHeJ_P0060745 Ptx3 protein_coding protein_coding MGP_C3HHeJ_T0060746.1 MGP_C3HHeJ_G0026993.1 mouse_genomes_project 3 65054003 65055189 + Ptx3 protein_coding retained_intron MGP_C3HHeJ_T0001342.1 MGP_C3HHeJ_G0001273.1 mouse_genomes_project 3 154417301 154420755 + TEC TEC MGP_C3HHeJ_T0062959.1 MGP_C3HHeJ_G0027499.1 mouse_genomes_project 3 114700776 114704091 - MGP_C3HHeJ_P0062959 Amy2a1 protein_coding protein_coding MGP_C3HHeJ_T0061560.1 MGP_C3HHeJ_G0027159.1 mouse_genomes_project 3 89275621 89278341 + Adar protein_coding retained_intron MGP_C3HHeJ_T0061561.1 MGP_C3HHeJ_G0027159.1 mouse_genomes_project 3 89275931 89296773 + Adar protein_coding processed_transcript MGP_C3HHeJ_T0061562.1 MGP_C3HHeJ_G0027159.1 mouse_genomes_project 3 89292371 89313972 + MGP_C3HHeJ_P0061562 Adar protein_coding protein_coding MGP_C3HHeJ_T0061563.1 MGP_C3HHeJ_G0027159.1 mouse_genomes_project 3 89292371 89313972 + MGP_C3HHeJ_P0061563 Adar protein_coding protein_coding MGP_C3HHeJ_T0061564.1 MGP_C3HHeJ_G0027159.1 mouse_genomes_project 3 89292371 89313972 + MGP_C3HHeJ_P0061564 Adar protein_coding protein_coding MGP_C3HHeJ_T0061565.1 MGP_C3HHeJ_G0027159.1 mouse_genomes_project 3 89292434 89316019 + MGP_C3HHeJ_P0061565 Adar protein_coding protein_coding MGP_C3HHeJ_T0061566.1 MGP_C3HHeJ_G0027159.1 mouse_genomes_project 3 89299205 89300909 + Adar protein_coding retained_intron MGP_C3HHeJ_T0061567.1 MGP_C3HHeJ_G0027159.1 mouse_genomes_project 3 89308248 89309815 + Adar protein_coding retained_intron MGP_C3HHeJ_T0014069.1 MGP_C3HHeJ_G0012173.1 mouse_genomes_project 3 105243078 105243796 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061469.1 MGP_C3HHeJ_G0027140.1 mouse_genomes_project 3 88770678 88781568 - MGP_C3HHeJ_P0061469 Trim46 protein_coding protein_coding MGP_C3HHeJ_T0061470.1 MGP_C3HHeJ_G0027140.1 mouse_genomes_project 3 88770678 88783500 - MGP_C3HHeJ_P0061470 Trim46 protein_coding protein_coding MGP_C3HHeJ_T0061471.1 MGP_C3HHeJ_G0027140.1 mouse_genomes_project 3 88770678 88781754 - MGP_C3HHeJ_P0061471 Trim46 protein_coding protein_coding MGP_C3HHeJ_T0061472.1 MGP_C3HHeJ_G0027140.1 mouse_genomes_project 3 88771336 88775844 - Trim46 protein_coding processed_transcript MGP_C3HHeJ_T0061473.1 MGP_C3HHeJ_G0027140.1 mouse_genomes_project 3 88771369 88783475 - MGP_C3HHeJ_P0061473 Trim46 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061474.1 MGP_C3HHeJ_G0027140.1 mouse_genomes_project 3 88780848 88783912 - MGP_C3HHeJ_P0061474 Trim46 protein_coding protein_coding MGP_C3HHeJ_T0060153.1 MGP_C3HHeJ_G0026873.1 mouse_genomes_project 3 34274706 34301277 - MGP_C3HHeJ_P0060153 Anxa5 protein_coding protein_coding MGP_C3HHeJ_T0060154.1 MGP_C3HHeJ_G0026873.1 mouse_genomes_project 3 34274947 34278118 - Anxa5 protein_coding retained_intron MGP_C3HHeJ_T0060155.1 MGP_C3HHeJ_G0026873.1 mouse_genomes_project 3 34277994 34301042 - MGP_C3HHeJ_P0060155 Anxa5 protein_coding protein_coding MGP_C3HHeJ_T0014142.1 MGP_C3HHeJ_G0012246.1 mouse_genomes_project 3 130672434 130673754 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061783.1 MGP_C3HHeJ_G0027210.1 mouse_genomes_project 3 92282951 92285083 - MGP_C3HHeJ_P0061783 protein_coding protein_coding MGP_C3HHeJ_T0013797.1 MGP_C3HHeJ_G0011901.1 mouse_genomes_project 3 16899699 16900447 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001246.1 MGP_C3HHeJ_G0001178.1 mouse_genomes_project 3 107490826 107492859 + TEC TEC MGP_C3HHeJ_T0063259.1 MGP_C3HHeJ_G0027558.1 mouse_genomes_project 3 127969714 128057032 + MGP_C3HHeJ_P0063259 Arsj protein_coding protein_coding MGP_C3HHeJ_T0061941.1 MGP_C3HHeJ_G0027269.1 mouse_genomes_project 3 95181531 95191242 - MGP_C3HHeJ_P0061941 Psmd4 protein_coding protein_coding MGP_C3HHeJ_T0061942.1 MGP_C3HHeJ_G0027269.1 mouse_genomes_project 3 95181534 95191180 - MGP_C3HHeJ_P0061942 Psmd4 protein_coding protein_coding MGP_C3HHeJ_T0061943.1 MGP_C3HHeJ_G0027269.1 mouse_genomes_project 3 95181541 95184106 - MGP_C3HHeJ_P0061943 Psmd4 protein_coding protein_coding MGP_C3HHeJ_T0061944.1 MGP_C3HHeJ_G0027269.1 mouse_genomes_project 3 95181542 95191176 - Psmd4 protein_coding retained_intron MGP_C3HHeJ_T0061945.1 MGP_C3HHeJ_G0027269.1 mouse_genomes_project 3 95181542 95191171 - MGP_C3HHeJ_P0061945 Psmd4 protein_coding protein_coding MGP_C3HHeJ_T0061946.1 MGP_C3HHeJ_G0027269.1 mouse_genomes_project 3 95181760 95191173 - Psmd4 protein_coding retained_intron MGP_C3HHeJ_T0061947.1 MGP_C3HHeJ_G0027269.1 mouse_genomes_project 3 95181765 95182755 - Psmd4 protein_coding retained_intron MGP_C3HHeJ_T0061948.1 MGP_C3HHeJ_G0027269.1 mouse_genomes_project 3 95184661 95191178 - Psmd4 protein_coding processed_transcript MGP_C3HHeJ_T0061738.1 MGP_C3HHeJ_G0027186.1 mouse_genomes_project 3 90158157 90164050 + MGP_C3HHeJ_P0061738 S100a16 protein_coding protein_coding MGP_C3HHeJ_T0061739.1 MGP_C3HHeJ_G0027186.1 mouse_genomes_project 3 90158218 90163916 + MGP_C3HHeJ_P0061739 S100a16 protein_coding protein_coding MGP_C3HHeJ_T0061740.1 MGP_C3HHeJ_G0027186.1 mouse_genomes_project 3 90158228 90163637 + S100a16 protein_coding processed_transcript MGP_C3HHeJ_T0061741.1 MGP_C3HHeJ_G0027186.1 mouse_genomes_project 3 90159788 90163829 + MGP_C3HHeJ_P0061741 S100a16 protein_coding protein_coding MGP_C3HHeJ_T0061742.1 MGP_C3HHeJ_G0027186.1 mouse_genomes_project 3 90160191 90163331 + MGP_C3HHeJ_P0061742 S100a16 protein_coding protein_coding MGP_C3HHeJ_T0061743.1 MGP_C3HHeJ_G0027186.1 mouse_genomes_project 3 90162049 90163650 + MGP_C3HHeJ_P0061743 S100a16 protein_coding protein_coding MGP_C3HHeJ_T0061744.1 MGP_C3HHeJ_G0027186.1 mouse_genomes_project 3 90162052 90163764 + MGP_C3HHeJ_P0061744 S100a16 protein_coding protein_coding MGP_C3HHeJ_T0061745.1 MGP_C3HHeJ_G0027186.1 mouse_genomes_project 3 90162064 90164053 + MGP_C3HHeJ_P0061745 S100a16 protein_coding protein_coding MGP_C3HHeJ_T0001134.1 MGP_C3HHeJ_G0001068.1 mouse_genomes_project 3 40489278 40489823 + TEC TEC MGP_C3HHeJ_T0013815.1 MGP_C3HHeJ_G0011919.1 mouse_genomes_project 3 24515388 24516553 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007471.1 MGP_C3HHeJ_G0006112.1 mouse_genomes_project 3 56350766 56355337 - Gm42512 lincRNA lincRNA MGP_C3HHeJ_T0013803.1 MGP_C3HHeJ_G0011907.1 mouse_genomes_project 3 18137970 18139582 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060673.1 MGP_C3HHeJ_G0026977.1 mouse_genomes_project 3 61807163 61898979 + MGP_C3HHeJ_P0060673 Mme protein_coding protein_coding MGP_C3HHeJ_T0060674.1 MGP_C3HHeJ_G0026977.1 mouse_genomes_project 3 61866417 61899348 + MGP_C3HHeJ_P0060674 Mme protein_coding protein_coding MGP_C3HHeJ_T0060675.1 MGP_C3HHeJ_G0026977.1 mouse_genomes_project 3 61866599 61899340 + MGP_C3HHeJ_P0060675 Mme protein_coding protein_coding MGP_C3HHeJ_T0060676.1 MGP_C3HHeJ_G0026977.1 mouse_genomes_project 3 61866712 61956938 + MGP_C3HHeJ_P0060676 Mme protein_coding protein_coding MGP_C3HHeJ_T0060677.1 MGP_C3HHeJ_G0026977.1 mouse_genomes_project 3 61867023 61962796 + MGP_C3HHeJ_P0060677 Mme protein_coding protein_coding MGP_C3HHeJ_T0060678.1 MGP_C3HHeJ_G0026977.1 mouse_genomes_project 3 61867246 61957465 + MGP_C3HHeJ_P0060678 Mme protein_coding protein_coding MGP_C3HHeJ_T0060679.1 MGP_C3HHeJ_G0026977.1 mouse_genomes_project 3 61868203 61899220 + MGP_C3HHeJ_P0060679 Mme protein_coding protein_coding MGP_C3HHeJ_T0060680.1 MGP_C3HHeJ_G0026977.1 mouse_genomes_project 3 61871311 61916150 + Mme protein_coding retained_intron MGP_C3HHeJ_T0007617.1 MGP_C3HHeJ_G0006224.1 mouse_genomes_project 3 132575405 132577196 + Gm43522 lincRNA lincRNA MGP_C3HHeJ_T0007618.1 MGP_C3HHeJ_G0006224.1 mouse_genomes_project 3 132576331 132578267 + Gm43522 lincRNA lincRNA MGP_C3HHeJ_T0014189.1 MGP_C3HHeJ_G0012293.1 mouse_genomes_project 3 142900850 142901391 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007529.1 MGP_C3HHeJ_G0006153.1 mouse_genomes_project 3 89329834 89335564 - 4632404H12Rik lincRNA lincRNA MGP_C3HHeJ_T0007530.1 MGP_C3HHeJ_G0006153.1 mouse_genomes_project 3 89330444 89335115 - 4632404H12Rik lincRNA lincRNA MGP_C3HHeJ_T0101939.1 MGP_C3HHeJ_G0039904.1 mouse_genomes_project 3 12178964 12187000 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004129.1 MGP_C3HHeJ_G0003636.1 mouse_genomes_project 3 4808230 4893317 + Gm16685 antisense antisense MGP_C3HHeJ_T0062908.1 MGP_C3HHeJ_G0027489.1 mouse_genomes_project 3 109887587 109924658 - MGP_C3HHeJ_P0062908 Fndc7 protein_coding protein_coding MGP_C3HHeJ_T0062909.1 MGP_C3HHeJ_G0027489.1 mouse_genomes_project 3 109887592 109892521 - Fndc7 protein_coding processed_transcript MGP_C3HHeJ_T0062910.1 MGP_C3HHeJ_G0027489.1 mouse_genomes_project 3 109889232 109924960 - MGP_C3HHeJ_P0062910 Fndc7 protein_coding protein_coding MGP_C3HHeJ_T0062911.1 MGP_C3HHeJ_G0027489.1 mouse_genomes_project 3 109889249 109924767 - MGP_C3HHeJ_P0062911 Fndc7 protein_coding protein_coding MGP_C3HHeJ_T0062912.1 MGP_C3HHeJ_G0027489.1 mouse_genomes_project 3 109889997 109892517 - Fndc7 protein_coding processed_transcript MGP_C3HHeJ_T0062913.1 MGP_C3HHeJ_G0027489.1 mouse_genomes_project 3 109896767 109904655 - Fndc7 protein_coding processed_transcript MGP_C3HHeJ_T0062914.1 MGP_C3HHeJ_G0027489.1 mouse_genomes_project 3 109903396 109915806 - Fndc7 protein_coding retained_intron MGP_C3HHeJ_T0013849.1 MGP_C3HHeJ_G0011953.1 mouse_genomes_project 3 36076713 36077056 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060629.1 MGP_C3HHeJ_G0026967.1 mouse_genomes_project 3 58480041 58497980 + MGP_C3HHeJ_P0060629 Aadacl2 protein_coding protein_coding MGP_C3HHeJ_T0098582.1 MGP_C3HHeJ_G0036777.1 mouse_genomes_project 3 91936343 91983104 - 4930511M18Rik sense_overlapping sense_overlapping MGP_C3HHeJ_T0063461.1 MGP_C3HHeJ_G0027592.1 mouse_genomes_project 3 134463681 134486877 - MGP_C3HHeJ_P0063461 Aimp1 protein_coding protein_coding MGP_C3HHeJ_T0063462.1 MGP_C3HHeJ_G0027592.1 mouse_genomes_project 3 134474928 134477922 - Aimp1 protein_coding retained_intron MGP_C3HHeJ_T0063463.1 MGP_C3HHeJ_G0027592.1 mouse_genomes_project 3 134475191 134480232 - Aimp1 protein_coding retained_intron MGP_C3HHeJ_T0063464.1 MGP_C3HHeJ_G0027592.1 mouse_genomes_project 3 134477151 134487363 - MGP_C3HHeJ_P0063464 Aimp1 protein_coding protein_coding MGP_C3HHeJ_T0063465.1 MGP_C3HHeJ_G0027592.1 mouse_genomes_project 3 134477241 134487115 - MGP_C3HHeJ_P0063465 Aimp1 protein_coding protein_coding MGP_C3HHeJ_T0063466.1 MGP_C3HHeJ_G0027592.1 mouse_genomes_project 3 134477257 134486830 - MGP_C3HHeJ_P0063466 Aimp1 protein_coding protein_coding MGP_C3HHeJ_T0063467.1 MGP_C3HHeJ_G0027592.1 mouse_genomes_project 3 134477952 134487117 - MGP_C3HHeJ_P0063467 Aimp1 protein_coding protein_coding MGP_C3HHeJ_T0063468.1 MGP_C3HHeJ_G0027592.1 mouse_genomes_project 3 134482871 134486829 - Aimp1 protein_coding retained_intron MGP_C3HHeJ_T0063732.1 MGP_C3HHeJ_G0027645.1 mouse_genomes_project 3 144808213 144857525 + MGP_C3HHeJ_P0063732 Kyat3 protein_coding protein_coding MGP_C3HHeJ_T0063733.1 MGP_C3HHeJ_G0027645.1 mouse_genomes_project 3 144808242 144859868 + MGP_C3HHeJ_P0063733 Kyat3 protein_coding protein_coding MGP_C3HHeJ_T0063734.1 MGP_C3HHeJ_G0027645.1 mouse_genomes_project 3 144808248 144838276 + MGP_C3HHeJ_P0063734 Kyat3 protein_coding protein_coding MGP_C3HHeJ_T0063735.1 MGP_C3HHeJ_G0027645.1 mouse_genomes_project 3 144808256 144857336 + MGP_C3HHeJ_P0063735 Kyat3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063736.1 MGP_C3HHeJ_G0027645.1 mouse_genomes_project 3 144835193 144843368 + Kyat3 protein_coding processed_transcript MGP_C3HHeJ_T0063737.1 MGP_C3HHeJ_G0027645.1 mouse_genomes_project 3 144840470 144842431 + Kyat3 protein_coding retained_intron MGP_C3HHeJ_T0063738.1 MGP_C3HHeJ_G0027645.1 mouse_genomes_project 3 144850625 144853961 + Kyat3 protein_coding retained_intron MGP_C3HHeJ_T0063739.1 MGP_C3HHeJ_G0027645.1 mouse_genomes_project 3 144851524 144857334 + Kyat3 protein_coding processed_transcript MGP_C3HHeJ_T0007638.1 MGP_C3HHeJ_G0006243.1 mouse_genomes_project 3 139660907 139669137 + Gm42610 lincRNA lincRNA MGP_C3HHeJ_T0099265.1 MGP_C3HHeJ_G0037459.1 mouse_genomes_project 3 78393158 78393262 + Gm24150 snRNA snRNA MGP_C3HHeJ_T0099286.1 MGP_C3HHeJ_G0037480.1 mouse_genomes_project 3 96621214 96621379 + Rnu1b1 snRNA snRNA MGP_C3HHeJ_T0014033.1 MGP_C3HHeJ_G0012137.1 mouse_genomes_project 3 96036015 96036910 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061290.1 MGP_C3HHeJ_G0027116.1 mouse_genomes_project 3 88096790 88098066 - Lamtor2 protein_coding retained_intron MGP_C3HHeJ_T0061291.1 MGP_C3HHeJ_G0027116.1 mouse_genomes_project 3 88096790 88100007 - MGP_C3HHeJ_P0061291 Lamtor2 protein_coding protein_coding MGP_C3HHeJ_T0061292.1 MGP_C3HHeJ_G0027116.1 mouse_genomes_project 3 88096791 88099842 - MGP_C3HHeJ_P0061292 Lamtor2 protein_coding protein_coding MGP_C3HHeJ_T0061293.1 MGP_C3HHeJ_G0027116.1 mouse_genomes_project 3 88096792 88099876 - Lamtor2 protein_coding processed_transcript MGP_C3HHeJ_T0061294.1 MGP_C3HHeJ_G0027116.1 mouse_genomes_project 3 88099212 88100057 - Lamtor2 protein_coding retained_intron MGP_C3HHeJ_T0062263.1 MGP_C3HHeJ_G0027338.1 mouse_genomes_project 3 97137653 97159006 + MGP_C3HHeJ_P0062263 Pdzk1 protein_coding protein_coding MGP_C3HHeJ_T0062264.1 MGP_C3HHeJ_G0027338.1 mouse_genomes_project 3 97137832 97159091 + MGP_C3HHeJ_P0062264 Pdzk1 protein_coding protein_coding MGP_C3HHeJ_T0062265.1 MGP_C3HHeJ_G0027338.1 mouse_genomes_project 3 97138445 97178787 + MGP_C3HHeJ_P0062265 Pdzk1 protein_coding protein_coding MGP_C3HHeJ_T0062266.1 MGP_C3HHeJ_G0027338.1 mouse_genomes_project 3 97140523 97178607 + MGP_C3HHeJ_P0062266 Pdzk1 protein_coding protein_coding MGP_C3HHeJ_T0062267.1 MGP_C3HHeJ_G0027338.1 mouse_genomes_project 3 97140540 97178333 + MGP_C3HHeJ_P0062267 Pdzk1 protein_coding protein_coding MGP_C3HHeJ_T0062268.1 MGP_C3HHeJ_G0027338.1 mouse_genomes_project 3 97140540 97178457 + MGP_C3HHeJ_P0062268 Pdzk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062269.1 MGP_C3HHeJ_G0027338.1 mouse_genomes_project 3 97141589 97157727 + MGP_C3HHeJ_P0062269 Pdzk1 protein_coding protein_coding MGP_C3HHeJ_T0017794.1 MGP_C3HHeJ_G0015289.1 mouse_genomes_project 3 144998266 145015627 + Gm43646 processed_transcript processed_transcript MGP_C3HHeJ_T0013843.1 MGP_C3HHeJ_G0011947.1 mouse_genomes_project 3 34960514 34961610 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007644.1 MGP_C3HHeJ_G0006249.1 mouse_genomes_project 3 142763517 142833179 - lincRNA lincRNA MGP_C3HHeJ_T0007645.1 MGP_C3HHeJ_G0006249.1 mouse_genomes_project 3 142832539 142833179 - lincRNA lincRNA MGP_C3HHeJ_T0062451.1 MGP_C3HHeJ_G0027386.1 mouse_genomes_project 3 103539364 103670856 - MGP_C3HHeJ_P0062451 Sycp1 protein_coding protein_coding MGP_C3HHeJ_T0062452.1 MGP_C3HHeJ_G0027386.1 mouse_genomes_project 3 103539570 103541548 - Sycp1 protein_coding processed_transcript MGP_C3HHeJ_T0062453.1 MGP_C3HHeJ_G0027386.1 mouse_genomes_project 3 103539606 103670856 - MGP_C3HHeJ_P0062453 Sycp1 protein_coding protein_coding MGP_C3HHeJ_T0062454.1 MGP_C3HHeJ_G0027386.1 mouse_genomes_project 3 103653666 103670846 - MGP_C3HHeJ_P0062454 Sycp1 protein_coding protein_coding MGP_C3HHeJ_T0062960.1 MGP_C3HHeJ_G0027500.1 mouse_genomes_project 3 114756062 114771639 - MGP_C3HHeJ_P0062960 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062961.1 MGP_C3HHeJ_G0027500.1 mouse_genomes_project 3 114756358 114762229 - protein_coding retained_intron MGP_C3HHeJ_T0062962.1 MGP_C3HHeJ_G0027500.1 mouse_genomes_project 3 114762900 114775149 - MGP_C3HHeJ_P0062962 protein_coding protein_coding MGP_C3HHeJ_T0062963.1 MGP_C3HHeJ_G0027500.1 mouse_genomes_project 3 114765848 114813455 - MGP_C3HHeJ_P0062963 protein_coding protein_coding MGP_C3HHeJ_T0101964.1 MGP_C3HHeJ_G0039929.1 mouse_genomes_project 3 94342375 94342567 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010443.1 MGP_C3HHeJ_G0008576.1 mouse_genomes_project 3 88763358 88763441 - Mir92b miRNA miRNA MGP_C3HHeJ_T0013952.1 MGP_C3HHeJ_G0012056.1 mouse_genomes_project 3 68829794 68830665 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059756.1 MGP_C3HHeJ_G0026796.1 mouse_genomes_project 3 13024615 13061141 - protein_coding retained_intron MGP_C3HHeJ_T0101978.1 MGP_C3HHeJ_G0039943.1 mouse_genomes_project 3 114384277 114407983 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013763.1 MGP_C3HHeJ_G0011867.1 mouse_genomes_project 3 7417451 7417551 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007409.1 MGP_C3HHeJ_G0006066.1 mouse_genomes_project 3 32034574 32091445 - Gm38505 lincRNA lincRNA MGP_C3HHeJ_T0001136.1 MGP_C3HHeJ_G0001070.1 mouse_genomes_project 3 43224969 43227561 - TEC TEC MGP_C3HHeJ_T0062680.1 MGP_C3HHeJ_G0027435.1 mouse_genomes_project 3 107403649 107409841 + Dennd2d protein_coding processed_transcript MGP_C3HHeJ_T0062681.1 MGP_C3HHeJ_G0027435.1 mouse_genomes_project 3 107403675 107425220 + MGP_C3HHeJ_P0062681 Dennd2d protein_coding protein_coding MGP_C3HHeJ_T0062682.1 MGP_C3HHeJ_G0027435.1 mouse_genomes_project 3 107403694 107409859 + MGP_C3HHeJ_P0062682 Dennd2d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062683.1 MGP_C3HHeJ_G0027435.1 mouse_genomes_project 3 107407303 107423183 + MGP_C3HHeJ_P0062683 Dennd2d protein_coding protein_coding MGP_C3HHeJ_T0062684.1 MGP_C3HHeJ_G0027435.1 mouse_genomes_project 3 107408671 107409895 + Dennd2d protein_coding retained_intron MGP_C3HHeJ_T0062685.1 MGP_C3HHeJ_G0027435.1 mouse_genomes_project 3 107414426 107416547 + Dennd2d protein_coding retained_intron MGP_C3HHeJ_T0060259.1 MGP_C3HHeJ_G0026893.1 mouse_genomes_project 3 38529277 38546502 + MGP_C3HHeJ_P0060259 Slc25a31 protein_coding protein_coding MGP_C3HHeJ_T0099270.1 MGP_C3HHeJ_G0037464.1 mouse_genomes_project 3 85605619 85605730 + Gm23025 snRNA snRNA MGP_C3HHeJ_T0014128.1 MGP_C3HHeJ_G0012232.1 mouse_genomes_project 3 124513498 124513693 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013793.1 MGP_C3HHeJ_G0011897.1 mouse_genomes_project 3 15837509 15838708 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001078.1 MGP_C3HHeJ_G0001012.1 mouse_genomes_project 3 7574651 7575148 + TEC TEC MGP_C3HHeJ_T0062623.1 MGP_C3HHeJ_G0027417.1 mouse_genomes_project 3 105855294 105907798 - MGP_C3HHeJ_P0062623 Cttnbp2nl protein_coding protein_coding MGP_C3HHeJ_T0062624.1 MGP_C3HHeJ_G0027417.1 mouse_genomes_project 3 105855296 105907603 - MGP_C3HHeJ_P0062624 Cttnbp2nl protein_coding protein_coding MGP_C3HHeJ_T0062625.1 MGP_C3HHeJ_G0027417.1 mouse_genomes_project 3 105859444 105907606 - MGP_C3HHeJ_P0062625 Cttnbp2nl protein_coding protein_coding MGP_C3HHeJ_T0062626.1 MGP_C3HHeJ_G0027417.1 mouse_genomes_project 3 105859474 105907577 - Cttnbp2nl protein_coding retained_intron MGP_C3HHeJ_T0007400.1 MGP_C3HHeJ_G0006058.1 mouse_genomes_project 3 24628197 24631187 + 1700125G22Rik lincRNA lincRNA MGP_C3HHeJ_T0100577.1 MGP_C3HHeJ_G0038771.1 mouse_genomes_project 3 122112193 122112321 - Gm25013 snoRNA snoRNA MGP_C3HHeJ_T0007431.1 MGP_C3HHeJ_G0006086.1 mouse_genomes_project 3 36314833 36331688 - Gm43536 lincRNA lincRNA MGP_C3HHeJ_T0007432.1 MGP_C3HHeJ_G0006086.1 mouse_genomes_project 3 36315637 36331690 - Gm43536 lincRNA lincRNA MGP_C3HHeJ_T0007433.1 MGP_C3HHeJ_G0006086.1 mouse_genomes_project 3 36317292 36331930 - Gm43536 lincRNA lincRNA MGP_C3HHeJ_T0060249.1 MGP_C3HHeJ_G0026889.1 mouse_genomes_project 3 35572863 35578973 - protein_coding processed_transcript MGP_C3HHeJ_T0001205.1 MGP_C3HHeJ_G0001137.1 mouse_genomes_project 3 67279975 67286893 + TEC TEC MGP_C3HHeJ_T0059859.1 MGP_C3HHeJ_G0026820.1 mouse_genomes_project 3 24093708 24458776 + MGP_C3HHeJ_P0059859 Spata16 protein_coding protein_coding MGP_C3HHeJ_T0059860.1 MGP_C3HHeJ_G0026820.1 mouse_genomes_project 3 24093735 24393466 + MGP_C3HHeJ_P0059860 Spata16 protein_coding protein_coding MGP_C3HHeJ_T0063394.1 MGP_C3HHeJ_G0027577.1 mouse_genomes_project 3 131683724 131696985 + MGP_C3HHeJ_P0063394 Casp6 protein_coding protein_coding MGP_C3HHeJ_T0063395.1 MGP_C3HHeJ_G0027577.1 mouse_genomes_project 3 131683757 131691626 + Casp6 protein_coding processed_transcript MGP_C3HHeJ_T0063396.1 MGP_C3HHeJ_G0027577.1 mouse_genomes_project 3 131683800 131687714 + Casp6 protein_coding retained_intron MGP_C3HHeJ_T0063397.1 MGP_C3HHeJ_G0027577.1 mouse_genomes_project 3 131693343 131696483 + Casp6 protein_coding retained_intron MGP_C3HHeJ_T0014199.1 MGP_C3HHeJ_G0012303.1 mouse_genomes_project 3 147013212 147014887 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060435.1 MGP_C3HHeJ_G0026922.1 mouse_genomes_project 3 51766856 51777839 + Stoml3 protein_coding retained_intron MGP_C3HHeJ_T0060436.1 MGP_C3HHeJ_G0026922.1 mouse_genomes_project 3 51766930 51789695 + MGP_C3HHeJ_P0060436 Stoml3 protein_coding protein_coding MGP_C3HHeJ_T0060776.1 MGP_C3HHeJ_G0027001.1 mouse_genomes_project 3 66734674 66901307 + MGP_C3HHeJ_P0060776 Iqcj protein_coding protein_coding MGP_C3HHeJ_T0060778.1 MGP_C3HHeJ_G0027001.1 mouse_genomes_project 3 66734767 66908796 + MGP_C3HHeJ_P0060778 Iqcj protein_coding unknown_likely_coding MGP_C3HHeJ_T0001270.1 MGP_C3HHeJ_G0001202.1 mouse_genomes_project 3 123275489 123279092 - TEC TEC MGP_C3HHeJ_T0004233.1 MGP_C3HHeJ_G0003710.1 mouse_genomes_project 3 96841210 96843366 - Gm15441 antisense antisense MGP_C3HHeJ_T0004234.1 MGP_C3HHeJ_G0003710.1 mouse_genomes_project 3 96841233 96852232 - Gm15441 antisense antisense MGP_C3HHeJ_T0062060.1 MGP_C3HHeJ_G0027290.1 mouse_genomes_project 3 95734907 95765329 + MGP_C3HHeJ_P0062060 Ctss protein_coding protein_coding MGP_C3HHeJ_T0062061.1 MGP_C3HHeJ_G0027290.1 mouse_genomes_project 3 95735015 95765335 + MGP_C3HHeJ_P0062061 Ctss protein_coding protein_coding MGP_C3HHeJ_T0063077.1 MGP_C3HHeJ_G0027524.1 mouse_genomes_project 3 118926776 119048541 + MGP_C3HHeJ_P0063077 Plppr5 protein_coding protein_coding MGP_C3HHeJ_T0063078.1 MGP_C3HHeJ_G0027524.1 mouse_genomes_project 3 118927167 119048541 + MGP_C3HHeJ_P0063078 Plppr5 protein_coding protein_coding MGP_C3HHeJ_T0007422.1 MGP_C3HHeJ_G0006078.1 mouse_genomes_project 3 34339940 34346632 - Gm11549 lincRNA lincRNA MGP_C3HHeJ_T0007625.1 MGP_C3HHeJ_G0006231.1 mouse_genomes_project 3 134643566 134684694 - Gm29811 lincRNA lincRNA MGP_C3HHeJ_T0098438.1 MGP_C3HHeJ_G0036643.1 mouse_genomes_project 3 104896767 104897835 - 9530097N15Rik sense_intronic sense_intronic MGP_C3HHeJ_T0004201.1 MGP_C3HHeJ_G0003688.1 mouse_genomes_project 3 88171689 88176274 - Gm20652 antisense antisense MGP_C3HHeJ_T0001366.1 MGP_C3HHeJ_G0001297.1 mouse_genomes_project 3 161002641 161004324 + TEC TEC MGP_C3HHeJ_T0001092.1 MGP_C3HHeJ_G0001026.1 mouse_genomes_project 3 26740653 26742733 + TEC TEC MGP_C3HHeJ_T0062332.1 MGP_C3HHeJ_G0027354.1 mouse_genomes_project 3 98660475 98686876 + MGP_C3HHeJ_P0062332 Hmgcs2 protein_coding protein_coding MGP_C3HHeJ_T0062333.1 MGP_C3HHeJ_G0027354.1 mouse_genomes_project 3 98660475 98686882 + MGP_C3HHeJ_P0062333 Hmgcs2 protein_coding protein_coding MGP_C3HHeJ_T0007678.1 MGP_C3HHeJ_G0006277.1 mouse_genomes_project 3 150013518 150029248 - Gm36888 lincRNA lincRNA MGP_C3HHeJ_T0014060.1 MGP_C3HHeJ_G0012164.1 mouse_genomes_project 3 103106675 103107143 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013887.1 MGP_C3HHeJ_G0011991.1 mouse_genomes_project 3 49779392 49779705 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063446.1 MGP_C3HHeJ_G0027587.1 mouse_genomes_project 3 133135518 133150142 - MGP_C3HHeJ_P0063446 Cyp2u1 protein_coding protein_coding MGP_C3HHeJ_T0063447.1 MGP_C3HHeJ_G0027587.1 mouse_genomes_project 3 133140206 133150118 - MGP_C3HHeJ_P0063447 Cyp2u1 protein_coding protein_coding MGP_C3HHeJ_T0063448.1 MGP_C3HHeJ_G0027587.1 mouse_genomes_project 3 133141339 133150145 - Cyp2u1 protein_coding processed_transcript MGP_C3HHeJ_T0001294.1 MGP_C3HHeJ_G0001226.1 mouse_genomes_project 3 128657062 128659550 - TEC TEC MGP_C3HHeJ_T0063073.1 MGP_C3HHeJ_G0027522.1 mouse_genomes_project 3 118304301 118321700 + MGP_C3HHeJ_P0063073 4930455H04Rik protein_coding protein_coding MGP_C3HHeJ_T0063599.1 MGP_C3HHeJ_G0027614.1 mouse_genomes_project 3 139537433 139540011 - protein_coding lincRNA MGP_C3HHeJ_T0061865.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94564815 94572866 + MGP_C3HHeJ_P0061865 Celf3 protein_coding protein_coding MGP_C3HHeJ_T0061866.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94566354 94579702 + MGP_C3HHeJ_P0061866 Celf3 protein_coding protein_coding MGP_C3HHeJ_T0061867.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94566601 94579703 + MGP_C3HHeJ_P0061867 Celf3 protein_coding protein_coding MGP_C3HHeJ_T0061868.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94566630 94579706 + MGP_C3HHeJ_P0061868 Celf3 protein_coding protein_coding MGP_C3HHeJ_T0061869.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94566640 94575115 + Celf3 protein_coding retained_intron MGP_C3HHeJ_T0061870.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94570098 94574758 + Celf3 protein_coding processed_transcript MGP_C3HHeJ_T0061871.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94570265 94579702 + Celf3 protein_coding processed_transcript MGP_C3HHeJ_T0061872.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94571874 94579702 + Celf3 protein_coding retained_intron MGP_C3HHeJ_T0061873.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94571911 94574486 + MGP_C3HHeJ_P0061873 Celf3 protein_coding protein_coding MGP_C3HHeJ_T0061874.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94571918 94574831 + MGP_C3HHeJ_P0061874 Celf3 protein_coding protein_coding MGP_C3HHeJ_T0061875.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94572824 94579691 + Celf3 protein_coding retained_intron MGP_C3HHeJ_T0061876.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94574192 94576158 + Celf3 protein_coding retained_intron MGP_C3HHeJ_T0061877.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94574748 94577101 + Celf3 protein_coding retained_intron MGP_C3HHeJ_T0010444.1 MGP_C3HHeJ_G0008577.1 mouse_genomes_project 3 89593222 89593280 - Mir7669 miRNA miRNA MGP_C3HHeJ_T0004148.1 MGP_C3HHeJ_G0003650.1 mouse_genomes_project 3 33734291 33743956 + Gm15952 antisense antisense MGP_C3HHeJ_T0004149.1 MGP_C3HHeJ_G0003650.1 mouse_genomes_project 3 33734291 33791817 + Gm15952 antisense antisense MGP_C3HHeJ_T0004150.1 MGP_C3HHeJ_G0003650.1 mouse_genomes_project 3 33734303 33739288 + Gm15952 antisense antisense MGP_C3HHeJ_T0061550.1 MGP_C3HHeJ_G0027156.1 mouse_genomes_project 3 88986835 89002644 + MGP_C3HHeJ_P0061550 Pbxip1 protein_coding protein_coding MGP_C3HHeJ_T0061551.1 MGP_C3HHeJ_G0027156.1 mouse_genomes_project 3 88986841 88997215 + Pbxip1 protein_coding processed_transcript MGP_C3HHeJ_T0061552.1 MGP_C3HHeJ_G0027156.1 mouse_genomes_project 3 88986844 88997854 + MGP_C3HHeJ_P0061552 Pbxip1 protein_coding protein_coding MGP_C3HHeJ_T0061553.1 MGP_C3HHeJ_G0027156.1 mouse_genomes_project 3 88986883 88997163 + MGP_C3HHeJ_P0061553 Pbxip1 protein_coding protein_coding MGP_C3HHeJ_T0061554.1 MGP_C3HHeJ_G0027156.1 mouse_genomes_project 3 88986885 88997207 + MGP_C3HHeJ_P0061554 Pbxip1 protein_coding protein_coding MGP_C3HHeJ_T0060250.1 MGP_C3HHeJ_G0026890.1 mouse_genomes_project 3 36337284 36373512 - MGP_C3HHeJ_P0060250 protein_coding protein_coding MGP_C3HHeJ_T0060251.1 MGP_C3HHeJ_G0026890.1 mouse_genomes_project 3 36337677 36371761 - MGP_C3HHeJ_P0060251 protein_coding protein_coding MGP_C3HHeJ_T0060252.1 MGP_C3HHeJ_G0026890.1 mouse_genomes_project 3 36340107 36343583 - MGP_C3HHeJ_P0060252 protein_coding protein_coding MGP_C3HHeJ_T0060253.1 MGP_C3HHeJ_G0026890.1 mouse_genomes_project 3 36371920 36373483 - protein_coding processed_transcript MGP_C3HHeJ_T0013759.1 MGP_C3HHeJ_G0011863.1 mouse_genomes_project 3 6345660 6346105 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062561.1 MGP_C3HHeJ_G0027405.1 mouse_genomes_project 3 104716811 104775055 + MGP_C3HHeJ_P0062561 Rsbn1 protein_coding protein_coding MGP_C3HHeJ_T0062562.1 MGP_C3HHeJ_G0027405.1 mouse_genomes_project 3 104716842 104775078 + MGP_C3HHeJ_P0062562 Rsbn1 protein_coding protein_coding MGP_C3HHeJ_T0062563.1 MGP_C3HHeJ_G0027405.1 mouse_genomes_project 3 104717258 104772313 + MGP_C3HHeJ_P0062563 Rsbn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062564.1 MGP_C3HHeJ_G0027405.1 mouse_genomes_project 3 104732046 104768578 + MGP_C3HHeJ_P0062564 Rsbn1 protein_coding protein_coding MGP_C3HHeJ_T0061036.1 MGP_C3HHeJ_G0027062.1 mouse_genomes_project 3 83944836 83948295 + MGP_C3HHeJ_P0061036 Tigd4 protein_coding protein_coding MGP_C3HHeJ_T0061706.1 MGP_C3HHeJ_G0027179.1 mouse_genomes_project 3 90062314 90077696 - MGP_C3HHeJ_P0061706 Npr1 protein_coding protein_coding MGP_C3HHeJ_T0061707.1 MGP_C3HHeJ_G0027179.1 mouse_genomes_project 3 90062433 90063536 - Npr1 protein_coding retained_intron MGP_C3HHeJ_T0061708.1 MGP_C3HHeJ_G0027179.1 mouse_genomes_project 3 90066841 90069305 - Npr1 protein_coding processed_transcript MGP_C3HHeJ_T0061709.1 MGP_C3HHeJ_G0027179.1 mouse_genomes_project 3 90069227 90070768 - Npr1 protein_coding retained_intron MGP_C3HHeJ_T0061710.1 MGP_C3HHeJ_G0027179.1 mouse_genomes_project 3 90069246 90073250 - MGP_C3HHeJ_P0061710 Npr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001138.1 MGP_C3HHeJ_G0001072.1 mouse_genomes_project 3 43407914 43410495 + TEC TEC MGP_C3HHeJ_T0064132.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160744841 160804393 + MGP_C3HHeJ_P0064132 Ankrd13c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064133.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160745016 160802546 + MGP_C3HHeJ_P0064133 Ankrd13c protein_coding protein_coding MGP_C3HHeJ_T0064134.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160745016 160805000 + MGP_C3HHeJ_P0064134 Ankrd13c protein_coding protein_coding MGP_C3HHeJ_T0064135.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160745068 160803809 + Ankrd13c protein_coding retained_intron MGP_C3HHeJ_T0064136.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160785124 160791336 + Ankrd13c protein_coding retained_intron MGP_C3HHeJ_T0064137.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160788314 160800635 + Ankrd13c protein_coding retained_intron MGP_C3HHeJ_T0064138.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160790226 160797756 + Ankrd13c protein_coding processed_transcript MGP_C3HHeJ_T0064139.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160790804 160797726 + Ankrd13c protein_coding retained_intron MGP_C3HHeJ_T0064140.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160795120 160799733 + Ankrd13c protein_coding retained_intron MGP_C3HHeJ_T0064141.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160796034 160797772 + Ankrd13c protein_coding retained_intron MGP_C3HHeJ_T0062066.1 MGP_C3HHeJ_G0027292.1 mouse_genomes_project 3 95805736 95838344 + MGP_C3HHeJ_P0062066 Golph3l protein_coding protein_coding MGP_C3HHeJ_T0062067.1 MGP_C3HHeJ_G0027292.1 mouse_genomes_project 3 95805736 95838339 + MGP_C3HHeJ_P0062067 Golph3l protein_coding protein_coding MGP_C3HHeJ_T0062068.1 MGP_C3HHeJ_G0027292.1 mouse_genomes_project 3 95805736 95838344 + MGP_C3HHeJ_P0062068 Golph3l protein_coding protein_coding MGP_C3HHeJ_T0062069.1 MGP_C3HHeJ_G0027292.1 mouse_genomes_project 3 95805771 95838338 + MGP_C3HHeJ_P0062069 Golph3l protein_coding protein_coding MGP_C3HHeJ_T0062070.1 MGP_C3HHeJ_G0027292.1 mouse_genomes_project 3 95805771 95836661 + MGP_C3HHeJ_P0062070 Golph3l protein_coding protein_coding MGP_C3HHeJ_T0062071.1 MGP_C3HHeJ_G0027292.1 mouse_genomes_project 3 95805776 95838337 + MGP_C3HHeJ_P0062071 Golph3l protein_coding protein_coding MGP_C3HHeJ_T0062072.1 MGP_C3HHeJ_G0027292.1 mouse_genomes_project 3 95805783 95838338 + MGP_C3HHeJ_P0062072 Golph3l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062073.1 MGP_C3HHeJ_G0027292.1 mouse_genomes_project 3 95805792 95836592 + MGP_C3HHeJ_P0062073 Golph3l protein_coding protein_coding MGP_C3HHeJ_T0062727.1 MGP_C3HHeJ_G0027447.1 mouse_genomes_project 3 108230078 108236087 + MGP_C3HHeJ_P0062727 Lamtor5 protein_coding protein_coding MGP_C3HHeJ_T0062728.1 MGP_C3HHeJ_G0027447.1 mouse_genomes_project 3 108230219 108236090 + MGP_C3HHeJ_P0062728 Lamtor5 protein_coding protein_coding MGP_C3HHeJ_T0061358.1 MGP_C3HHeJ_G0027125.1 mouse_genomes_project 3 88419591 88429002 - MGP_C3HHeJ_P0061358 Msto1 protein_coding protein_coding MGP_C3HHeJ_T0061359.1 MGP_C3HHeJ_G0027125.1 mouse_genomes_project 3 88423112 88427145 - Msto1 protein_coding retained_intron MGP_C3HHeJ_T0061360.1 MGP_C3HHeJ_G0027125.1 mouse_genomes_project 3 88424685 88429070 - MGP_C3HHeJ_P0061360 Msto1 protein_coding protein_coding MGP_C3HHeJ_T0061361.1 MGP_C3HHeJ_G0027125.1 mouse_genomes_project 3 88424714 88428974 - Msto1 protein_coding retained_intron MGP_C3HHeJ_T0061362.1 MGP_C3HHeJ_G0027125.1 mouse_genomes_project 3 88426429 88428953 - Msto1 protein_coding retained_intron MGP_C3HHeJ_T0004275.1 MGP_C3HHeJ_G0003731.1 mouse_genomes_project 3 109735065 109738805 + Gm27244 antisense antisense MGP_C3HHeJ_T0013986.1 MGP_C3HHeJ_G0012090.1 mouse_genomes_project 3 80661304 80661584 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100541.1 MGP_C3HHeJ_G0038735.1 mouse_genomes_project 3 62971262 62971420 - Gm23897 snoRNA snoRNA MGP_C3HHeJ_T0013863.1 MGP_C3HHeJ_G0011967.1 mouse_genomes_project 3 41729094 41729623 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004178.1 MGP_C3HHeJ_G0003672.1 mouse_genomes_project 3 59905895 59909244 - Gm37696 antisense antisense MGP_C3HHeJ_T0013885.1 MGP_C3HHeJ_G0011989.1 mouse_genomes_project 3 49560256 49560641 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007488.1 MGP_C3HHeJ_G0006126.1 mouse_genomes_project 3 72376155 72518712 + Gm38353 lincRNA lincRNA MGP_C3HHeJ_T0063322.1 MGP_C3HHeJ_G0027563.1 mouse_genomes_project 3 129312738 129315234 + MGP_C3HHeJ_P0063322 Neurog2 protein_coding protein_coding MGP_C3HHeJ_T0007675.1 MGP_C3HHeJ_G0006274.1 mouse_genomes_project 3 149479072 149511950 + Gm29771 lincRNA lincRNA MGP_C3HHeJ_T0063347.1 MGP_C3HHeJ_G0027568.1 mouse_genomes_project 3 130942691 130966457 + MGP_C3HHeJ_P0063347 Pitx2 protein_coding protein_coding MGP_C3HHeJ_T0063348.1 MGP_C3HHeJ_G0027568.1 mouse_genomes_project 3 130942735 130966445 + MGP_C3HHeJ_P0063348 Pitx2 protein_coding protein_coding MGP_C3HHeJ_T0063349.1 MGP_C3HHeJ_G0027568.1 mouse_genomes_project 3 130942739 130966458 + MGP_C3HHeJ_P0063349 Pitx2 protein_coding protein_coding MGP_C3HHeJ_T0063350.1 MGP_C3HHeJ_G0027568.1 mouse_genomes_project 3 130942782 130947391 + MGP_C3HHeJ_P0063350 Pitx2 protein_coding protein_coding MGP_C3HHeJ_T0063351.1 MGP_C3HHeJ_G0027568.1 mouse_genomes_project 3 130946760 130965764 + MGP_C3HHeJ_P0063351 Pitx2 protein_coding protein_coding MGP_C3HHeJ_T0063352.1 MGP_C3HHeJ_G0027568.1 mouse_genomes_project 3 130959743 130962586 + Pitx2 protein_coding retained_intron MGP_C3HHeJ_T0063353.1 MGP_C3HHeJ_G0027568.1 mouse_genomes_project 3 130959783 130966455 + MGP_C3HHeJ_P0063353 Pitx2 protein_coding protein_coding MGP_C3HHeJ_T0063354.1 MGP_C3HHeJ_G0027568.1 mouse_genomes_project 3 130960086 130962436 + MGP_C3HHeJ_P0063354 Pitx2 protein_coding protein_coding MGP_C3HHeJ_T0099282.1 MGP_C3HHeJ_G0037476.1 mouse_genomes_project 3 95040721 95040823 - Gm26279 snRNA snRNA MGP_C3HHeJ_T0061809.1 MGP_C3HHeJ_G0027234.1 mouse_genomes_project 3 92730271 92732129 - MGP_C3HHeJ_P0061809 2310050C09Rik protein_coding protein_coding MGP_C3HHeJ_T0060236.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35264515 35424094 + MGP_C3HHeJ_P0060236 Spata5 protein_coding protein_coding MGP_C3HHeJ_T0060237.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35264927 35424094 + MGP_C3HHeJ_P0060237 Spata5 protein_coding protein_coding MGP_C3HHeJ_T0060238.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35264941 35424094 + MGP_C3HHeJ_P0060238 Spata5 protein_coding protein_coding MGP_C3HHeJ_T0060239.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35265002 35274039 + Spata5 protein_coding processed_transcript MGP_C3HHeJ_T0060240.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35265481 35274801 + Spata5 protein_coding processed_transcript MGP_C3HHeJ_T0060241.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35280739 35287992 + Spata5 protein_coding processed_transcript MGP_C3HHeJ_T0060242.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35285406 35288112 + Spata5 protein_coding retained_intron MGP_C3HHeJ_T0060243.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35300354 35379716 + Spata5 protein_coding retained_intron MGP_C3HHeJ_T0060244.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35343888 35424007 + Spata5 protein_coding processed_transcript MGP_C3HHeJ_T0060245.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35418078 35424088 + Spata5 protein_coding processed_transcript MGP_C3HHeJ_T0013938.1 MGP_C3HHeJ_G0012042.1 mouse_genomes_project 3 65709241 65710030 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007404.1 MGP_C3HHeJ_G0006062.1 mouse_genomes_project 3 28135052 28136438 - lincRNA lincRNA MGP_C3HHeJ_T0001141.1 MGP_C3HHeJ_G0001075.1 mouse_genomes_project 3 46225033 46225142 + TEC TEC MGP_C3HHeJ_T0004230.1 MGP_C3HHeJ_G0003707.1 mouse_genomes_project 3 96458993 96470395 - Gm15444 antisense antisense MGP_C3HHeJ_T0062627.1 MGP_C3HHeJ_G0027418.1 mouse_genomes_project 3 105920808 105932789 + MGP_C3HHeJ_P0062627 4930564D02Rik protein_coding protein_coding MGP_C3HHeJ_T0014133.1 MGP_C3HHeJ_G0012237.1 mouse_genomes_project 3 125557312 125558358 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001293.1 MGP_C3HHeJ_G0001225.1 mouse_genomes_project 3 128635155 128636041 - TEC TEC MGP_C3HHeJ_T0014038.1 MGP_C3HHeJ_G0012142.1 mouse_genomes_project 3 96672909 96673361 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061497.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88881331 88893730 - MGP_C3HHeJ_P0061497 Adam15 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061498.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88882429 88893737 - MGP_C3HHeJ_P0061498 Adam15 protein_coding protein_coding MGP_C3HHeJ_T0061499.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88882429 88893744 - MGP_C3HHeJ_P0061499 Adam15 protein_coding protein_coding MGP_C3HHeJ_T0061500.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88882430 88883947 - Adam15 protein_coding processed_transcript MGP_C3HHeJ_T0061501.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88882433 88883230 - Adam15 protein_coding processed_transcript MGP_C3HHeJ_T0061502.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88882433 88893707 - MGP_C3HHeJ_P0061502 Adam15 protein_coding protein_coding MGP_C3HHeJ_T0061503.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88882437 88893723 - MGP_C3HHeJ_P0061503 Adam15 protein_coding protein_coding MGP_C3HHeJ_T0061504.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88882534 88883142 - Adam15 protein_coding retained_intron MGP_C3HHeJ_T0061505.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88882704 88883709 - Adam15 protein_coding retained_intron MGP_C3HHeJ_T0061506.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88882863 88886469 - Adam15 protein_coding retained_intron MGP_C3HHeJ_T0061507.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88885521 88893722 - Adam15 protein_coding retained_intron MGP_C3HHeJ_T0061508.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88890275 88893708 - Adam15 protein_coding retained_intron MGP_C3HHeJ_T0061509.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88892265 88892855 - Adam15 protein_coding processed_transcript MGP_C3HHeJ_T0007449.1 MGP_C3HHeJ_G0006095.1 mouse_genomes_project 3 46777203 46780687 - 1700018B24Rik lincRNA lincRNA MGP_C3HHeJ_T0060881.1 MGP_C3HHeJ_G0027026.1 mouse_genomes_project 3 75217561 75889308 + MGP_C3HHeJ_P0060881 Fstl5 protein_coding protein_coding MGP_C3HHeJ_T0060882.1 MGP_C3HHeJ_G0027026.1 mouse_genomes_project 3 75217850 75720078 + Fstl5 protein_coding processed_transcript MGP_C3HHeJ_T0060883.1 MGP_C3HHeJ_G0027026.1 mouse_genomes_project 3 75218874 75887925 + MGP_C3HHeJ_P0060883 Fstl5 protein_coding protein_coding MGP_C3HHeJ_T0060884.1 MGP_C3HHeJ_G0027026.1 mouse_genomes_project 3 75765453 75768761 + Fstl5 protein_coding retained_intron MGP_C3HHeJ_T0060885.1 MGP_C3HHeJ_G0027026.1 mouse_genomes_project 3 75772869 75886838 + MGP_C3HHeJ_P0060885 Fstl5 protein_coding protein_coding MGP_C3HHeJ_T0014139.1 MGP_C3HHeJ_G0012243.1 mouse_genomes_project 3 129179660 129180006 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013782.1 MGP_C3HHeJ_G0011886.1 mouse_genomes_project 3 12058701 12058990 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059794.1 MGP_C3HHeJ_G0026809.1 mouse_genomes_project 3 17005947 17007943 - MGP_C3HHeJ_P0059794 Crh protein_coding protein_coding MGP_C3HHeJ_T0061786.1 MGP_C3HHeJ_G0027213.1 mouse_genomes_project 3 92314596 92317460 - MGP_C3HHeJ_P0061786 Sprr3 protein_coding protein_coding MGP_C3HHeJ_T0060980.1 MGP_C3HHeJ_G0027048.1 mouse_genomes_project 3 82293141 82300414 + MGP_C3HHeJ_P0060980 Fgg protein_coding protein_coding MGP_C3HHeJ_T0060981.1 MGP_C3HHeJ_G0027048.1 mouse_genomes_project 3 82293278 82300070 + MGP_C3HHeJ_P0060981 Fgg protein_coding protein_coding MGP_C3HHeJ_T0099309.1 MGP_C3HHeJ_G0037503.1 mouse_genomes_project 3 134747457 134747564 + Gm23196 snRNA snRNA MGP_C3HHeJ_T0060018.1 MGP_C3HHeJ_G0026853.1 mouse_genomes_project 3 30176256 30187595 + MGP_C3HHeJ_P0060018 Zfp639 protein_coding protein_coding MGP_C3HHeJ_T0060019.1 MGP_C3HHeJ_G0026853.1 mouse_genomes_project 3 30176532 30187505 + MGP_C3HHeJ_P0060019 Zfp639 protein_coding protein_coding MGP_C3HHeJ_T0060020.1 MGP_C3HHeJ_G0026853.1 mouse_genomes_project 3 30176661 30186328 + MGP_C3HHeJ_P0060020 Zfp639 protein_coding protein_coding MGP_C3HHeJ_T0060021.1 MGP_C3HHeJ_G0026853.1 mouse_genomes_project 3 30176893 30179173 + Zfp639 protein_coding processed_transcript MGP_C3HHeJ_T0060022.1 MGP_C3HHeJ_G0026853.1 mouse_genomes_project 3 30178175 30186391 + Zfp639 protein_coding retained_intron MGP_C3HHeJ_T0060023.1 MGP_C3HHeJ_G0026853.1 mouse_genomes_project 3 30178997 30186330 + MGP_C3HHeJ_P0060023 Zfp639 protein_coding protein_coding MGP_C3HHeJ_T0060024.1 MGP_C3HHeJ_G0026853.1 mouse_genomes_project 3 30182056 30187447 + MGP_C3HHeJ_P0060024 Zfp639 protein_coding protein_coding MGP_C3HHeJ_T0060025.1 MGP_C3HHeJ_G0026853.1 mouse_genomes_project 3 30183841 30187279 + MGP_C3HHeJ_P0060025 Zfp639 protein_coding protein_coding MGP_C3HHeJ_T0060026.1 MGP_C3HHeJ_G0026853.1 mouse_genomes_project 3 30185560 30186322 + Zfp639 protein_coding retained_intron MGP_C3HHeJ_T0063219.1 MGP_C3HHeJ_G0027549.1 mouse_genomes_project 3 124863234 124963684 + MGP_C3HHeJ_P0063219 Sec24d protein_coding protein_coding MGP_C3HHeJ_T0063220.1 MGP_C3HHeJ_G0027549.1 mouse_genomes_project 3 124863258 124876670 + Sec24d protein_coding retained_intron MGP_C3HHeJ_T0063221.1 MGP_C3HHeJ_G0027549.1 mouse_genomes_project 3 124863269 124870189 + MGP_C3HHeJ_P0063221 Sec24d protein_coding protein_coding MGP_C3HHeJ_T0063222.1 MGP_C3HHeJ_G0027549.1 mouse_genomes_project 3 124888181 124963679 + Sec24d protein_coding retained_intron MGP_C3HHeJ_T0063223.1 MGP_C3HHeJ_G0027549.1 mouse_genomes_project 3 124931461 124933402 + Sec24d protein_coding retained_intron MGP_C3HHeJ_T0063224.1 MGP_C3HHeJ_G0027549.1 mouse_genomes_project 3 124933931 124948023 + Sec24d protein_coding processed_transcript MGP_C3HHeJ_T0063225.1 MGP_C3HHeJ_G0027549.1 mouse_genomes_project 3 124952945 124954003 + Sec24d protein_coding retained_intron MGP_C3HHeJ_T0063226.1 MGP_C3HHeJ_G0027549.1 mouse_genomes_project 3 124962756 124963679 + Sec24d protein_coding retained_intron MGP_C3HHeJ_T0010473.1 MGP_C3HHeJ_G0008606.1 mouse_genomes_project 3 137039795 137039901 + Gm24048 miRNA miRNA MGP_C3HHeJ_T0061627.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89634528 89644607 + MGP_C3HHeJ_P0061627 4933434E20Rik protein_coding protein_coding MGP_C3HHeJ_T0061628.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89635704 89641240 + 4933434E20Rik protein_coding processed_transcript MGP_C3HHeJ_T0061629.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89635704 89636478 + 4933434E20Rik protein_coding retained_intron MGP_C3HHeJ_T0061630.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89635704 89641686 + MGP_C3HHeJ_P0061630 4933434E20Rik protein_coding protein_coding MGP_C3HHeJ_T0061631.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89635704 89643583 + MGP_C3HHeJ_P0061631 4933434E20Rik protein_coding protein_coding MGP_C3HHeJ_T0061632.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89635704 89645034 + MGP_C3HHeJ_P0061632 4933434E20Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061633.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89635704 89645031 + MGP_C3HHeJ_P0061633 4933434E20Rik protein_coding protein_coding MGP_C3HHeJ_T0061634.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89635704 89645930 + MGP_C3HHeJ_P0061634 4933434E20Rik protein_coding protein_coding MGP_C3HHeJ_T0061635.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89636378 89641456 + 4933434E20Rik protein_coding retained_intron MGP_C3HHeJ_T0061636.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89641233 89644885 + 4933434E20Rik protein_coding retained_intron MGP_C3HHeJ_T0061637.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89645384 89650932 + MGP_C3HHeJ_P0061637 4933434E20Rik protein_coding protein_coding MGP_C3HHeJ_T0001215.1 MGP_C3HHeJ_G0001147.1 mouse_genomes_project 3 76892887 76894396 - TEC TEC MGP_C3HHeJ_T0010430.1 MGP_C3HHeJ_G0008563.1 mouse_genomes_project 3 49481962 49482028 + Gm24282 miRNA miRNA MGP_C3HHeJ_T0007535.1 MGP_C3HHeJ_G0006157.1 mouse_genomes_project 3 92703824 92704211 - Gm38201 lincRNA lincRNA MGP_C3HHeJ_T0001177.1 MGP_C3HHeJ_G0001109.1 mouse_genomes_project 3 51389437 51389893 + TEC TEC MGP_C3HHeJ_T0101940.1 MGP_C3HHeJ_G0039905.1 mouse_genomes_project 3 18933810 18935509 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0063740.1 MGP_C3HHeJ_G0027646.1 mouse_genomes_project 3 144879814 144899026 + MGP_C3HHeJ_P0063740 Gtf2b protein_coding protein_coding MGP_C3HHeJ_T0063741.1 MGP_C3HHeJ_G0027646.1 mouse_genomes_project 3 144879992 144883184 + Gtf2b protein_coding retained_intron MGP_C3HHeJ_T0001257.1 MGP_C3HHeJ_G0001189.1 mouse_genomes_project 3 117820377 117820816 + TEC TEC MGP_C3HHeJ_T0059749.1 MGP_C3HHeJ_G0026792.1 mouse_genomes_project 3 12303536 12311937 + MGP_C3HHeJ_P0059749 Car2 protein_coding protein_coding MGP_C3HHeJ_T0059750.1 MGP_C3HHeJ_G0026792.1 mouse_genomes_project 3 12303691 12317567 + MGP_C3HHeJ_P0059750 Car2 protein_coding protein_coding MGP_C3HHeJ_T0059751.1 MGP_C3HHeJ_G0026792.1 mouse_genomes_project 3 12303902 12305830 + Car2 protein_coding retained_intron MGP_C3HHeJ_T0064042.1 MGP_C3HHeJ_G0027699.1 mouse_genomes_project 3 156510629 156563365 - MGP_C3HHeJ_P0064042 Msh4 protein_coding protein_coding MGP_C3HHeJ_T0064043.1 MGP_C3HHeJ_G0027699.1 mouse_genomes_project 3 156510749 156530843 - Msh4 protein_coding retained_intron MGP_C3HHeJ_T0064044.1 MGP_C3HHeJ_G0027699.1 mouse_genomes_project 3 156510749 156535450 - Msh4 protein_coding retained_intron MGP_C3HHeJ_T0064045.1 MGP_C3HHeJ_G0027699.1 mouse_genomes_project 3 156510749 156519004 - Msh4 protein_coding processed_transcript MGP_C3HHeJ_T0064046.1 MGP_C3HHeJ_G0027699.1 mouse_genomes_project 3 156510749 156535450 - Msh4 protein_coding retained_intron MGP_C3HHeJ_T0064047.1 MGP_C3HHeJ_G0027699.1 mouse_genomes_project 3 156510749 156519030 - Msh4 protein_coding retained_intron MGP_C3HHeJ_T0064048.1 MGP_C3HHeJ_G0027699.1 mouse_genomes_project 3 156510749 156561958 - MGP_C3HHeJ_P0064048 Msh4 protein_coding protein_coding MGP_C3HHeJ_T0064049.1 MGP_C3HHeJ_G0027699.1 mouse_genomes_project 3 156510753 156562118 - MGP_C3HHeJ_P0064049 Msh4 protein_coding protein_coding MGP_C3HHeJ_T0063069.1 MGP_C3HHeJ_G0027521.1 mouse_genomes_project 3 118253146 118305022 - MGP_C3HHeJ_P0063069 Palmd protein_coding protein_coding MGP_C3HHeJ_T0063070.1 MGP_C3HHeJ_G0027521.1 mouse_genomes_project 3 118256511 118304893 - MGP_C3HHeJ_P0063070 Palmd protein_coding protein_coding MGP_C3HHeJ_T0063071.1 MGP_C3HHeJ_G0027521.1 mouse_genomes_project 3 118261920 118305021 - MGP_C3HHeJ_P0063071 Palmd protein_coding protein_coding MGP_C3HHeJ_T0063072.1 MGP_C3HHeJ_G0027521.1 mouse_genomes_project 3 118301079 118304778 - Palmd protein_coding retained_intron MGP_C3HHeJ_T0001181.1 MGP_C3HHeJ_G0001113.1 mouse_genomes_project 3 53675748 53677879 + TEC TEC MGP_C3HHeJ_T0013856.1 MGP_C3HHeJ_G0011960.1 mouse_genomes_project 3 38696364 38696812 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062639.1 MGP_C3HHeJ_G0027423.1 mouse_genomes_project 3 106738044 106775486 + MGP_C3HHeJ_P0062639 Adora3 protein_coding protein_coding MGP_C3HHeJ_T0062644.1 MGP_C3HHeJ_G0027423.1 mouse_genomes_project 3 106771542 106776059 + MGP_C3HHeJ_P0062644 Adora3 protein_coding protein_coding MGP_C3HHeJ_T0062646.1 MGP_C3HHeJ_G0027423.1 mouse_genomes_project 3 106771816 106773489 + Adora3 protein_coding retained_intron MGP_C3HHeJ_T0059735.1 MGP_C3HHeJ_G0026787.1 mouse_genomes_project 3 12006865 12036164 + MGP_C3HHeJ_P0059735 E2f5 protein_coding protein_coding MGP_C3HHeJ_T0059736.1 MGP_C3HHeJ_G0026787.1 mouse_genomes_project 3 12006895 12036163 + MGP_C3HHeJ_P0059736 E2f5 protein_coding protein_coding MGP_C3HHeJ_T0060053.1 MGP_C3HHeJ_G0026857.1 mouse_genomes_project 3 30403957 30421498 - MGP_C3HHeJ_P0060053 Mrpl47 protein_coding protein_coding MGP_C3HHeJ_T0060054.1 MGP_C3HHeJ_G0026857.1 mouse_genomes_project 3 30406135 30416963 - Mrpl47 protein_coding processed_transcript MGP_C3HHeJ_T0060055.1 MGP_C3HHeJ_G0026857.1 mouse_genomes_project 3 30420451 30421954 - Mrpl47 protein_coding retained_intron MGP_C3HHeJ_T0004157.1 MGP_C3HHeJ_G0003654.1 mouse_genomes_project 3 35078403 35079543 + Gm12534 antisense antisense MGP_C3HHeJ_T0060062.1 MGP_C3HHeJ_G0026859.1 mouse_genomes_project 3 30506383 30643640 + MGP_C3HHeJ_P0060062 Usp13 protein_coding protein_coding MGP_C3HHeJ_T0060063.1 MGP_C3HHeJ_G0026859.1 mouse_genomes_project 3 30506408 30638757 + MGP_C3HHeJ_P0060063 Usp13 protein_coding protein_coding MGP_C3HHeJ_T0060064.1 MGP_C3HHeJ_G0026859.1 mouse_genomes_project 3 30506548 30619560 + MGP_C3HHeJ_P0060064 Usp13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060065.1 MGP_C3HHeJ_G0026859.1 mouse_genomes_project 3 30619529 30638765 + MGP_C3HHeJ_P0060065 Usp13 protein_coding protein_coding MGP_C3HHeJ_T0007590.1 MGP_C3HHeJ_G0006205.1 mouse_genomes_project 3 118599591 118600280 + Gm42891 lincRNA lincRNA MGP_C3HHeJ_T0099288.1 MGP_C3HHeJ_G0037482.1 mouse_genomes_project 3 96738802 96738999 + Gm22614 snRNA snRNA MGP_C3HHeJ_T0059673.1 MGP_C3HHeJ_G0026768.1 mouse_genomes_project 3 6170420 6269033 - MGP_C3HHeJ_P0059673 Tpd52 protein_coding protein_coding MGP_C3HHeJ_T0059674.1 MGP_C3HHeJ_G0026768.1 mouse_genomes_project 3 6173453 6268788 - MGP_C3HHeJ_P0059674 Tpd52 protein_coding protein_coding MGP_C3HHeJ_T0059675.1 MGP_C3HHeJ_G0026768.1 mouse_genomes_project 3 6176576 6213422 - MGP_C3HHeJ_P0059675 Tpd52 protein_coding protein_coding MGP_C3HHeJ_T0059676.1 MGP_C3HHeJ_G0026768.1 mouse_genomes_project 3 6176634 6268749 - MGP_C3HHeJ_P0059676 Tpd52 protein_coding protein_coding MGP_C3HHeJ_T0059677.1 MGP_C3HHeJ_G0026768.1 mouse_genomes_project 3 6176730 6268733 - MGP_C3HHeJ_P0059677 Tpd52 protein_coding protein_coding MGP_C3HHeJ_T0059678.1 MGP_C3HHeJ_G0026768.1 mouse_genomes_project 3 6176742 6211717 - MGP_C3HHeJ_P0059678 Tpd52 protein_coding protein_coding MGP_C3HHeJ_T0059679.1 MGP_C3HHeJ_G0026768.1 mouse_genomes_project 3 6176817 6268788 - MGP_C3HHeJ_P0059679 Tpd52 protein_coding protein_coding MGP_C3HHeJ_T0059680.1 MGP_C3HHeJ_G0026768.1 mouse_genomes_project 3 6193905 6268747 - Tpd52 protein_coding processed_transcript MGP_C3HHeJ_T0059681.1 MGP_C3HHeJ_G0026768.1 mouse_genomes_project 3 6193967 6268788 - MGP_C3HHeJ_P0059681 Tpd52 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0004323.1 MGP_C3HHeJ_G0003767.1 mouse_genomes_project 3 147707564 147709586 - 9530034A14Rik antisense antisense MGP_C3HHeJ_T0004239.1 MGP_C3HHeJ_G0003714.1 mouse_genomes_project 3 99813934 99820344 - Gm43120 antisense antisense MGP_C3HHeJ_T0017753.1 MGP_C3HHeJ_G0015276.1 mouse_genomes_project 3 104598947 104604271 + Gm15471 processed_transcript retained_intron MGP_C3HHeJ_T0017754.1 MGP_C3HHeJ_G0015276.1 mouse_genomes_project 3 104598954 104604272 + Gm15471 processed_transcript antisense MGP_C3HHeJ_T0004191.1 MGP_C3HHeJ_G0003683.1 mouse_genomes_project 3 82150694 82220895 + Rbm46os antisense antisense MGP_C3HHeJ_T0004192.1 MGP_C3HHeJ_G0003683.1 mouse_genomes_project 3 82150694 82218977 + Rbm46os antisense antisense MGP_C3HHeJ_T0004193.1 MGP_C3HHeJ_G0003683.1 mouse_genomes_project 3 82150735 82219012 + Rbm46os antisense antisense MGP_C3HHeJ_T0004194.1 MGP_C3HHeJ_G0003683.1 mouse_genomes_project 3 82178942 82221540 + Rbm46os antisense antisense MGP_C3HHeJ_T0061059.1 MGP_C3HHeJ_G0027068.1 mouse_genomes_project 3 85389669 85502663 + Sh3d19 protein_coding processed_transcript MGP_C3HHeJ_T0061061.1 MGP_C3HHeJ_G0027068.1 mouse_genomes_project 3 85457473 85502419 + Sh3d19 protein_coding processed_transcript MGP_C3HHeJ_T0061062.1 MGP_C3HHeJ_G0027068.1 mouse_genomes_project 3 85459211 85502707 + Sh3d19 protein_coding processed_transcript MGP_C3HHeJ_T0061063.1 MGP_C3HHeJ_G0027068.1 mouse_genomes_project 3 85459319 85502696 + Sh3d19 protein_coding processed_transcript MGP_C3HHeJ_T0061064.1 MGP_C3HHeJ_G0027068.1 mouse_genomes_project 3 85490059 85549704 + MGP_C3HHeJ_P0061064 Sh3d19 protein_coding protein_coding MGP_C3HHeJ_T0061065.1 MGP_C3HHeJ_G0027068.1 mouse_genomes_project 3 85503558 85549700 + MGP_C3HHeJ_P0061065 Sh3d19 protein_coding protein_coding MGP_C3HHeJ_T0061066.1 MGP_C3HHeJ_G0027068.1 mouse_genomes_project 3 85542870 85548292 + Sh3d19 protein_coding retained_intron MGP_C3HHeJ_T0059960.1 MGP_C3HHeJ_G0026838.1 mouse_genomes_project 3 28223179 28250477 + MGP_C3HHeJ_P0059960 Lrriq4 protein_coding protein_coding MGP_C3HHeJ_T0059961.1 MGP_C3HHeJ_G0026838.1 mouse_genomes_project 3 28223988 28250345 + MGP_C3HHeJ_P0059961 Lrriq4 protein_coding protein_coding MGP_C3HHeJ_T0059962.1 MGP_C3HHeJ_G0026838.1 mouse_genomes_project 3 28226543 28250345 + MGP_C3HHeJ_P0059962 Lrriq4 protein_coding protein_coding MGP_C3HHeJ_T0059832.1 MGP_C3HHeJ_G0026814.1 mouse_genomes_project 3 17551785 17578886 - MGP_C3HHeJ_P0059832 Cpa3 protein_coding protein_coding MGP_C3HHeJ_T0059833.1 MGP_C3HHeJ_G0026814.1 mouse_genomes_project 3 17564989 17577452 - Cpa3 protein_coding processed_transcript MGP_C3HHeJ_T0060793.1 MGP_C3HHeJ_G0027005.1 mouse_genomes_project 3 67720386 67722736 - MGP_C3HHeJ_P0060793 Gm17641 protein_coding protein_coding MGP_C3HHeJ_T0017708.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 31836381 31839076 + processed_transcript retained_intron MGP_C3HHeJ_T0017709.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 31836549 32382660 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017710.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 31836569 32420360 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017711.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 31933837 32382735 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017712.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 31933950 32249719 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017713.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32298197 32420184 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017714.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32298250 32422325 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017715.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32298257 32312662 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017716.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32298261 32382698 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017717.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32298585 32298652 + processed_transcript misc_RNA MGP_C3HHeJ_T0017718.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32329193 32420324 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017719.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32380416 32422325 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017720.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32382425 32420227 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017721.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32382503 32425192 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017722.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32382548 32425155 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017723.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32382755 32426893 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017724.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32400342 32420480 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017725.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32409539 32422327 + processed_transcript sense_overlapping MGP_C3HHeJ_T0014096.1 MGP_C3HHeJ_G0012200.1 mouse_genomes_project 3 113471009 113471874 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063835.1 MGP_C3HHeJ_G0027666.1 mouse_genomes_project 3 148326241 148362569 + MGP_C3HHeJ_P0063835 Syde2 protein_coding protein_coding MGP_C3HHeJ_T0063836.1 MGP_C3HHeJ_G0027666.1 mouse_genomes_project 3 148327024 148362569 + MGP_C3HHeJ_P0063836 Syde2 protein_coding protein_coding MGP_C3HHeJ_T0063837.1 MGP_C3HHeJ_G0027666.1 mouse_genomes_project 3 148332715 148337386 + Syde2 protein_coding processed_transcript MGP_C3HHeJ_T0062133.1 MGP_C3HHeJ_G0027301.1 mouse_genomes_project 3 96116067 96119776 - MGP_C3HHeJ_P0062133 Ciart protein_coding protein_coding MGP_C3HHeJ_T0062134.1 MGP_C3HHeJ_G0027301.1 mouse_genomes_project 3 96116069 96119802 - MGP_C3HHeJ_P0062134 Ciart protein_coding protein_coding MGP_C3HHeJ_T0062135.1 MGP_C3HHeJ_G0027301.1 mouse_genomes_project 3 96116369 96119822 - MGP_C3HHeJ_P0062135 Ciart protein_coding protein_coding MGP_C3HHeJ_T0062136.1 MGP_C3HHeJ_G0027301.1 mouse_genomes_project 3 96117075 96118817 - MGP_C3HHeJ_P0062136 Ciart protein_coding protein_coding MGP_C3HHeJ_T0062137.1 MGP_C3HHeJ_G0027301.1 mouse_genomes_project 3 96118022 96119774 - MGP_C3HHeJ_P0062137 Ciart protein_coding protein_coding MGP_C3HHeJ_T0062138.1 MGP_C3HHeJ_G0027301.1 mouse_genomes_project 3 96118243 96119645 - MGP_C3HHeJ_P0062138 Ciart protein_coding protein_coding MGP_C3HHeJ_T0098435.1 MGP_C3HHeJ_G0036640.1 mouse_genomes_project 3 104662521 104663781 + Gm15472 sense_intronic sense_intronic MGP_C3HHeJ_T0014027.1 MGP_C3HHeJ_G0012131.1 mouse_genomes_project 3 94947444 94948273 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061544.1 MGP_C3HHeJ_G0027155.1 mouse_genomes_project 3 88980339 88982869 + Pygo2 protein_coding processed_transcript MGP_C3HHeJ_T0061545.1 MGP_C3HHeJ_G0027155.1 mouse_genomes_project 3 88980386 88985254 + MGP_C3HHeJ_P0061545 Pygo2 protein_coding protein_coding MGP_C3HHeJ_T0061546.1 MGP_C3HHeJ_G0027155.1 mouse_genomes_project 3 88980549 88981295 + Pygo2 protein_coding processed_transcript MGP_C3HHeJ_T0061547.1 MGP_C3HHeJ_G0027155.1 mouse_genomes_project 3 88980865 88982808 + Pygo2 protein_coding processed_transcript MGP_C3HHeJ_T0061548.1 MGP_C3HHeJ_G0027155.1 mouse_genomes_project 3 88980962 88985254 + MGP_C3HHeJ_P0061548 Pygo2 protein_coding protein_coding MGP_C3HHeJ_T0061549.1 MGP_C3HHeJ_G0027155.1 mouse_genomes_project 3 88981157 88983118 + Pygo2 protein_coding processed_transcript MGP_C3HHeJ_T0100568.1 MGP_C3HHeJ_G0038762.1 mouse_genomes_project 3 105015812 105015928 + Gm23077 snoRNA snoRNA MGP_C3HHeJ_T0007456.1 MGP_C3HHeJ_G0006101.1 mouse_genomes_project 3 50397934 50406499 - Gm30074 lincRNA lincRNA MGP_C3HHeJ_T0063207.1 MGP_C3HHeJ_G0027547.1 mouse_genomes_project 3 124597477 124627377 - MGP_C3HHeJ_P0063207 Myoz2 protein_coding protein_coding MGP_C3HHeJ_T0063208.1 MGP_C3HHeJ_G0027547.1 mouse_genomes_project 3 124597788 124627206 - MGP_C3HHeJ_P0063208 Myoz2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063209.1 MGP_C3HHeJ_G0027547.1 mouse_genomes_project 3 124597873 124627366 - Myoz2 protein_coding processed_transcript MGP_C3HHeJ_T0063210.1 MGP_C3HHeJ_G0027547.1 mouse_genomes_project 3 124604887 124627325 - Myoz2 protein_coding processed_transcript MGP_C3HHeJ_T0063211.1 MGP_C3HHeJ_G0027547.1 mouse_genomes_project 3 124614309 124627314 - Myoz2 protein_coding retained_intron MGP_C3HHeJ_T0061810.1 MGP_C3HHeJ_G0027235.1 mouse_genomes_project 3 92792279 92794601 - MGP_C3HHeJ_P0061810 Lce3a protein_coding protein_coding MGP_C3HHeJ_T0061246.1 MGP_C3HHeJ_G0027108.1 mouse_genomes_project 3 87902116 87908491 + MGP_C3HHeJ_P0061246 Paqr6 protein_coding protein_coding MGP_C3HHeJ_T0061247.1 MGP_C3HHeJ_G0027108.1 mouse_genomes_project 3 87902121 87910506 + MGP_C3HHeJ_P0061247 Paqr6 protein_coding protein_coding MGP_C3HHeJ_T0061248.1 MGP_C3HHeJ_G0027108.1 mouse_genomes_project 3 87902123 87904637 + Paqr6 protein_coding processed_transcript MGP_C3HHeJ_T0061249.1 MGP_C3HHeJ_G0027108.1 mouse_genomes_project 3 87902125 87903335 + Paqr6 protein_coding retained_intron MGP_C3HHeJ_T0061250.1 MGP_C3HHeJ_G0027108.1 mouse_genomes_project 3 87904254 87910506 + Paqr6 protein_coding retained_intron MGP_C3HHeJ_T0013878.1 MGP_C3HHeJ_G0011982.1 mouse_genomes_project 3 47832421 47832956 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101946.1 MGP_C3HHeJ_G0039911.1 mouse_genomes_project 3 62679380 62680364 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004338.1 MGP_C3HHeJ_G0003779.1 mouse_genomes_project 3 160723143 160724740 + 1810013D15Rik antisense antisense MGP_C3HHeJ_T0004339.1 MGP_C3HHeJ_G0003779.1 mouse_genomes_project 3 160723405 160735630 + 1810013D15Rik antisense antisense MGP_C3HHeJ_T0101200.1 MGP_C3HHeJ_G0039337.1 mouse_genomes_project 3 124361771 124362065 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0014156.1 MGP_C3HHeJ_G0012260.1 mouse_genomes_project 3 135385552 135385827 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060839.1 MGP_C3HHeJ_G0027015.1 mouse_genomes_project 3 68702607 68738653 - MGP_C3HHeJ_P0060839 Sptssb protein_coding protein_coding MGP_C3HHeJ_T0060840.1 MGP_C3HHeJ_G0027015.1 mouse_genomes_project 3 68703643 68738635 - MGP_C3HHeJ_P0060840 Sptssb protein_coding protein_coding MGP_C3HHeJ_T0013920.1 MGP_C3HHeJ_G0012024.1 mouse_genomes_project 3 59291627 59292197 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061493.1 MGP_C3HHeJ_G0027145.1 mouse_genomes_project 3 88855974 88865054 - MGP_C3HHeJ_P0061493 Efna3 protein_coding protein_coding MGP_C3HHeJ_T0061494.1 MGP_C3HHeJ_G0027145.1 mouse_genomes_project 3 88857439 88864976 - MGP_C3HHeJ_P0061494 Efna3 protein_coding protein_coding MGP_C3HHeJ_T0061495.1 MGP_C3HHeJ_G0027145.1 mouse_genomes_project 3 88857934 88863720 - Efna3 protein_coding processed_transcript MGP_C3HHeJ_T0101413.1 MGP_C3HHeJ_G0039447.1 mouse_genomes_project 3 63577860 63578093 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0013805.1 MGP_C3HHeJ_G0011909.1 mouse_genomes_project 3 18452801 18453222 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061259.1 MGP_C3HHeJ_G0027111.1 mouse_genomes_project 3 87950327 87964945 - MGP_C3HHeJ_P0061259 Slc25a44 protein_coding protein_coding MGP_C3HHeJ_T0061260.1 MGP_C3HHeJ_G0027111.1 mouse_genomes_project 3 87950327 87964944 - MGP_C3HHeJ_P0061260 Slc25a44 protein_coding protein_coding MGP_C3HHeJ_T0061261.1 MGP_C3HHeJ_G0027111.1 mouse_genomes_project 3 87950328 87964976 - MGP_C3HHeJ_P0061261 Slc25a44 protein_coding protein_coding MGP_C3HHeJ_T0061262.1 MGP_C3HHeJ_G0027111.1 mouse_genomes_project 3 87950328 87964949 - MGP_C3HHeJ_P0061262 Slc25a44 protein_coding protein_coding MGP_C3HHeJ_T0062034.1 MGP_C3HHeJ_G0027286.1 mouse_genomes_project 3 95490303 95497288 + MGP_C3HHeJ_P0062034 Cers2 protein_coding protein_coding MGP_C3HHeJ_T0062035.1 MGP_C3HHeJ_G0027286.1 mouse_genomes_project 3 95490596 95499007 + MGP_C3HHeJ_P0062035 Cers2 protein_coding protein_coding MGP_C3HHeJ_T0062036.1 MGP_C3HHeJ_G0027286.1 mouse_genomes_project 3 95490759 95496181 + Cers2 protein_coding retained_intron MGP_C3HHeJ_T0062037.1 MGP_C3HHeJ_G0027286.1 mouse_genomes_project 3 95490779 95496731 + Cers2 protein_coding retained_intron MGP_C3HHeJ_T0062038.1 MGP_C3HHeJ_G0027286.1 mouse_genomes_project 3 95492757 95495958 + Cers2 protein_coding retained_intron MGP_C3HHeJ_T0062039.1 MGP_C3HHeJ_G0027286.1 mouse_genomes_project 3 95493428 95496450 + MGP_C3HHeJ_P0062039 Cers2 protein_coding protein_coding MGP_C3HHeJ_T0062040.1 MGP_C3HHeJ_G0027286.1 mouse_genomes_project 3 95494199 95497363 + MGP_C3HHeJ_P0062040 Cers2 protein_coding protein_coding MGP_C3HHeJ_T0062041.1 MGP_C3HHeJ_G0027286.1 mouse_genomes_project 3 95495540 95498080 + Cers2 protein_coding retained_intron MGP_C3HHeJ_T0062042.1 MGP_C3HHeJ_G0027286.1 mouse_genomes_project 3 95496347 95497365 + Cers2 protein_coding retained_intron MGP_C3HHeJ_T0007624.1 MGP_C3HHeJ_G0006230.1 mouse_genomes_project 3 134231456 134234010 - lincRNA lincRNA MGP_C3HHeJ_T0062270.1 MGP_C3HHeJ_G0027339.1 mouse_genomes_project 3 97176141 97212806 - MGP_C3HHeJ_P0062270 Gpr89 protein_coding protein_coding MGP_C3HHeJ_T0062271.1 MGP_C3HHeJ_G0027339.1 mouse_genomes_project 3 97176451 97200821 - Gpr89 protein_coding processed_transcript MGP_C3HHeJ_T0062272.1 MGP_C3HHeJ_G0027339.1 mouse_genomes_project 3 97179346 97184066 - Gpr89 protein_coding retained_intron MGP_C3HHeJ_T0062273.1 MGP_C3HHeJ_G0027339.1 mouse_genomes_project 3 97188442 97206426 - Gpr89 protein_coding processed_transcript MGP_C3HHeJ_T0062274.1 MGP_C3HHeJ_G0027339.1 mouse_genomes_project 3 97190331 97205318 - Gpr89 protein_coding processed_transcript MGP_C3HHeJ_T0062275.1 MGP_C3HHeJ_G0027339.1 mouse_genomes_project 3 97190331 97212772 - MGP_C3HHeJ_P0062275 Gpr89 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007686.1 MGP_C3HHeJ_G0006282.1 mouse_genomes_project 3 153102223 153107725 + Gm43470 lincRNA lincRNA MGP_C3HHeJ_T0007687.1 MGP_C3HHeJ_G0006282.1 mouse_genomes_project 3 153102302 153125011 + Gm43470 lincRNA lincRNA MGP_C3HHeJ_T0062724.1 MGP_C3HHeJ_G0027446.1 mouse_genomes_project 3 108181353 108187207 - MGP_C3HHeJ_P0062724 Prok1 protein_coding protein_coding MGP_C3HHeJ_T0062725.1 MGP_C3HHeJ_G0027446.1 mouse_genomes_project 3 108181368 108185816 - Prok1 protein_coding retained_intron MGP_C3HHeJ_T0062726.1 MGP_C3HHeJ_G0027446.1 mouse_genomes_project 3 108183686 108188262 - MGP_C3HHeJ_P0062726 Prok1 protein_coding protein_coding MGP_C3HHeJ_T0007657.1 MGP_C3HHeJ_G0006259.1 mouse_genomes_project 3 145723860 145725329 - Gm43616 lincRNA lincRNA MGP_C3HHeJ_T0001363.1 MGP_C3HHeJ_G0001294.1 mouse_genomes_project 3 160777324 160781266 + TEC TEC MGP_C3HHeJ_T0059874.1 MGP_C3HHeJ_G0026822.1 mouse_genomes_project 3 24656745 24719450 + MGP_C3HHeJ_P0059874 Nceh1 protein_coding protein_coding MGP_C3HHeJ_T0059875.1 MGP_C3HHeJ_G0026822.1 mouse_genomes_project 3 24656784 24700820 + Nceh1 protein_coding retained_intron MGP_C3HHeJ_T0059876.1 MGP_C3HHeJ_G0026822.1 mouse_genomes_project 3 24656784 24770089 + MGP_C3HHeJ_P0059876 Nceh1 protein_coding protein_coding MGP_C3HHeJ_T0059877.1 MGP_C3HHeJ_G0026822.1 mouse_genomes_project 3 24656784 24697172 + MGP_C3HHeJ_P0059877 Nceh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059878.1 MGP_C3HHeJ_G0026822.1 mouse_genomes_project 3 24662226 24714075 + Nceh1 protein_coding processed_transcript MGP_C3HHeJ_T0062193.1 MGP_C3HHeJ_G0027314.1 mouse_genomes_project 3 96470587 96471107 - MGP_C3HHeJ_P0062193 Hist2h2ac protein_coding protein_coding MGP_C3HHeJ_T0099244.1 MGP_C3HHeJ_G0037438.1 mouse_genomes_project 3 38884098 38884256 + Gm22043 snRNA snRNA MGP_C3HHeJ_T0062327.1 MGP_C3HHeJ_G0027351.1 mouse_genomes_project 3 98379713 98466657 + Notch2 protein_coding retained_intron MGP_C3HHeJ_T0062328.1 MGP_C3HHeJ_G0027351.1 mouse_genomes_project 3 98379724 98516126 + MGP_C3HHeJ_P0062328 Notch2 protein_coding protein_coding MGP_C3HHeJ_T0007564.1 MGP_C3HHeJ_G0006183.1 mouse_genomes_project 3 103432846 103434111 + Gm42682 lincRNA lincRNA MGP_C3HHeJ_T0004273.1 MGP_C3HHeJ_G0003729.1 mouse_genomes_project 3 109241535 109249612 - 1700010K24Rik antisense antisense MGP_C3HHeJ_T0061374.1 MGP_C3HHeJ_G0027127.1 mouse_genomes_project 3 88465512 88605208 + MGP_C3HHeJ_P0061374 Ash1l protein_coding protein_coding MGP_C3HHeJ_T0061376.1 MGP_C3HHeJ_G0027127.1 mouse_genomes_project 3 88483058 88605206 + MGP_C3HHeJ_P0061376 Ash1l protein_coding protein_coding MGP_C3HHeJ_T0061377.1 MGP_C3HHeJ_G0027127.1 mouse_genomes_project 3 88545363 88551730 + Ash1l protein_coding retained_intron MGP_C3HHeJ_T0061378.1 MGP_C3HHeJ_G0027127.1 mouse_genomes_project 3 88578296 88581190 + Ash1l protein_coding retained_intron MGP_C3HHeJ_T0001104.1 MGP_C3HHeJ_G0001038.1 mouse_genomes_project 3 30400337 30400650 - TEC TEC MGP_C3HHeJ_T0061466.1 MGP_C3HHeJ_G0027139.1 mouse_genomes_project 3 88765585 88769883 + MGP_C3HHeJ_P0061466 Muc1 protein_coding protein_coding MGP_C3HHeJ_T0061467.1 MGP_C3HHeJ_G0027139.1 mouse_genomes_project 3 88767758 88768602 + Muc1 protein_coding processed_transcript MGP_C3HHeJ_T0061468.1 MGP_C3HHeJ_G0027139.1 mouse_genomes_project 3 88767990 88769699 + Muc1 protein_coding processed_transcript MGP_C3HHeJ_T0001243.1 MGP_C3HHeJ_G0001175.1 mouse_genomes_project 3 105505404 105509692 - TEC TEC MGP_C3HHeJ_T0060176.1 MGP_C3HHeJ_G0026878.1 mouse_genomes_project 3 34452089 34522440 - MGP_C3HHeJ_P0060176 Trpc3 protein_coding protein_coding MGP_C3HHeJ_T0060177.1 MGP_C3HHeJ_G0026878.1 mouse_genomes_project 3 34452170 34452972 - Trpc3 protein_coding processed_transcript MGP_C3HHeJ_T0060178.1 MGP_C3HHeJ_G0026878.1 mouse_genomes_project 3 34452170 34452950 - Trpc3 protein_coding processed_transcript MGP_C3HHeJ_T0060179.1 MGP_C3HHeJ_G0026878.1 mouse_genomes_project 3 34470794 34473042 - Trpc3 protein_coding retained_intron MGP_C3HHeJ_T0060180.1 MGP_C3HHeJ_G0026878.1 mouse_genomes_project 3 34501392 34522440 - Trpc3 protein_coding retained_intron MGP_C3HHeJ_T0063388.1 MGP_C3HHeJ_G0027575.1 mouse_genomes_project 3 131614559 131630464 + MGP_C3HHeJ_P0063388 Cfi protein_coding protein_coding MGP_C3HHeJ_T0063389.1 MGP_C3HHeJ_G0027575.1 mouse_genomes_project 3 131615389 131656340 + MGP_C3HHeJ_P0063389 Cfi protein_coding protein_coding MGP_C3HHeJ_T0099280.1 MGP_C3HHeJ_G0037474.1 mouse_genomes_project 3 90171366 90171472 + Gm24593 snRNA snRNA MGP_C3HHeJ_T0001118.1 MGP_C3HHeJ_G0001052.1 mouse_genomes_project 3 35186491 35188955 + TEC TEC MGP_C3HHeJ_T0014035.1 MGP_C3HHeJ_G0012139.1 mouse_genomes_project 3 96212851 96213211 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063772.1 MGP_C3HHeJ_G0027651.1 mouse_genomes_project 3 146885477 146921868 - MGP_C3HHeJ_P0063772 Sh3glb1 protein_coding protein_coding MGP_C3HHeJ_T0063773.1 MGP_C3HHeJ_G0027651.1 mouse_genomes_project 3 146886694 146899249 - MGP_C3HHeJ_P0063773 Sh3glb1 protein_coding protein_coding MGP_C3HHeJ_T0063774.1 MGP_C3HHeJ_G0027651.1 mouse_genomes_project 3 146888710 146922081 - MGP_C3HHeJ_P0063774 Sh3glb1 protein_coding protein_coding MGP_C3HHeJ_T0063775.1 MGP_C3HHeJ_G0027651.1 mouse_genomes_project 3 146890643 146922093 - MGP_C3HHeJ_P0063775 Sh3glb1 protein_coding protein_coding MGP_C3HHeJ_T0063776.1 MGP_C3HHeJ_G0027651.1 mouse_genomes_project 3 146893145 146921963 - MGP_C3HHeJ_P0063776 Sh3glb1 protein_coding protein_coding MGP_C3HHeJ_T0063777.1 MGP_C3HHeJ_G0027651.1 mouse_genomes_project 3 146893777 146908415 - MGP_C3HHeJ_P0063777 Sh3glb1 protein_coding protein_coding MGP_C3HHeJ_T0061336.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88237244 88264058 + MGP_C3HHeJ_P0061336 2810403A07Rik protein_coding protein_coding MGP_C3HHeJ_T0061337.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88237255 88239503 + 2810403A07Rik protein_coding retained_intron MGP_C3HHeJ_T0061338.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88237268 88263988 + MGP_C3HHeJ_P0061338 2810403A07Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061339.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88237268 88263696 + MGP_C3HHeJ_P0061339 2810403A07Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061340.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88237274 88252785 + 2810403A07Rik protein_coding retained_intron MGP_C3HHeJ_T0061341.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88237278 88263137 + MGP_C3HHeJ_P0061341 2810403A07Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061342.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88244771 88260042 + 2810403A07Rik protein_coding processed_transcript MGP_C3HHeJ_T0061343.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88250015 88252088 + 2810403A07Rik protein_coding retained_intron MGP_C3HHeJ_T0061344.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88250811 88260121 + 2810403A07Rik protein_coding retained_intron MGP_C3HHeJ_T0061345.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88259913 88262219 + 2810403A07Rik protein_coding processed_transcript MGP_C3HHeJ_T0062746.1 MGP_C3HHeJ_G0027453.1 mouse_genomes_project 3 108558268 108569705 + MGP_C3HHeJ_P0062746 Alx3 protein_coding protein_coding MGP_C3HHeJ_T0007551.1 MGP_C3HHeJ_G0006172.1 mouse_genomes_project 3 99477544 99481152 - 5730437C11Rik lincRNA lincRNA MGP_C3HHeJ_T0007477.1 MGP_C3HHeJ_G0006116.1 mouse_genomes_project 3 59316194 59322550 + Gm38326 lincRNA lincRNA MGP_C3HHeJ_T0007402.1 MGP_C3HHeJ_G0006060.1 mouse_genomes_project 3 27345784 27461605 - Gm33206 lincRNA lincRNA MGP_C3HHeJ_T0014031.1 MGP_C3HHeJ_G0012135.1 mouse_genomes_project 3 95841167 95841919 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010459.1 MGP_C3HHeJ_G0008592.1 mouse_genomes_project 3 117235654 117235708 + Mir669n miRNA miRNA MGP_C3HHeJ_T0063621.1 MGP_C3HHeJ_G0027619.1 mouse_genomes_project 3 139919467 139921510 + MGP_C3HHeJ_P0063621 protein_coding protein_coding MGP_C3HHeJ_T0013751.1 MGP_C3HHeJ_G0011855.1 mouse_genomes_project 3 5083555 5084140 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014061.1 MGP_C3HHeJ_G0012165.1 mouse_genomes_project 3 103401224 103401351 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062011.1 MGP_C3HHeJ_G0027282.1 mouse_genomes_project 3 95415616 95425530 - MGP_C3HHeJ_P0062011 Bnipl protein_coding protein_coding MGP_C3HHeJ_T0062012.1 MGP_C3HHeJ_G0027282.1 mouse_genomes_project 3 95415640 95425386 - MGP_C3HHeJ_P0062012 Bnipl protein_coding protein_coding MGP_C3HHeJ_T0062013.1 MGP_C3HHeJ_G0027282.1 mouse_genomes_project 3 95416170 95425473 - MGP_C3HHeJ_P0062013 Bnipl protein_coding protein_coding MGP_C3HHeJ_T0062014.1 MGP_C3HHeJ_G0027282.1 mouse_genomes_project 3 95417328 95425485 - MGP_C3HHeJ_P0062014 Bnipl protein_coding protein_coding MGP_C3HHeJ_T0062015.1 MGP_C3HHeJ_G0027282.1 mouse_genomes_project 3 95419483 95422916 - Bnipl protein_coding retained_intron MGP_C3HHeJ_T0001311.1 MGP_C3HHeJ_G0001242.1 mouse_genomes_project 3 132342485 132348680 + TEC TEC MGP_C3HHeJ_T0001116.1 MGP_C3HHeJ_G0001050.1 mouse_genomes_project 3 34355544 34358654 - TEC TEC MGP_C3HHeJ_T0062972.1 MGP_C3HHeJ_G0027502.1 mouse_genomes_project 3 115240528 115443984 + MGP_C3HHeJ_P0062972 Col11a1 protein_coding protein_coding MGP_C3HHeJ_T0062973.1 MGP_C3HHeJ_G0027502.1 mouse_genomes_project 3 115240528 115327469 + MGP_C3HHeJ_P0062973 Col11a1 protein_coding protein_coding MGP_C3HHeJ_T0062974.1 MGP_C3HHeJ_G0027502.1 mouse_genomes_project 3 115240622 115243133 + Col11a1 protein_coding retained_intron MGP_C3HHeJ_T0062975.1 MGP_C3HHeJ_G0027502.1 mouse_genomes_project 3 115240887 115442100 + MGP_C3HHeJ_P0062975 Col11a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062976.1 MGP_C3HHeJ_G0027502.1 mouse_genomes_project 3 115240887 115385886 + MGP_C3HHeJ_P0062976 Col11a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062977.1 MGP_C3HHeJ_G0027502.1 mouse_genomes_project 3 115276522 115277490 + Col11a1 protein_coding retained_intron MGP_C3HHeJ_T0062978.1 MGP_C3HHeJ_G0027502.1 mouse_genomes_project 3 115367505 115374322 + Col11a1 protein_coding retained_intron MGP_C3HHeJ_T0062979.1 MGP_C3HHeJ_G0027502.1 mouse_genomes_project 3 115385659 115442581 + MGP_C3HHeJ_P0062979 Col11a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013764.1 MGP_C3HHeJ_G0011868.1 mouse_genomes_project 3 7565066 7565198 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063886.1 MGP_C3HHeJ_G0027679.1 mouse_genomes_project 3 149012025 149055093 - MGP_C3HHeJ_P0063886 Samd13 protein_coding protein_coding MGP_C3HHeJ_T0063887.1 MGP_C3HHeJ_G0027679.1 mouse_genomes_project 3 149012943 149051903 - MGP_C3HHeJ_P0063887 Samd13 protein_coding protein_coding MGP_C3HHeJ_T0063888.1 MGP_C3HHeJ_G0027679.1 mouse_genomes_project 3 149012954 149052015 - MGP_C3HHeJ_P0063888 Samd13 protein_coding protein_coding MGP_C3HHeJ_T0063889.1 MGP_C3HHeJ_G0027679.1 mouse_genomes_project 3 149013039 149054976 - MGP_C3HHeJ_P0063889 Samd13 protein_coding protein_coding MGP_C3HHeJ_T0063892.1 MGP_C3HHeJ_G0027679.1 mouse_genomes_project 3 149049946 149054972 - Samd13 protein_coding retained_intron MGP_C3HHeJ_T0001176.1 MGP_C3HHeJ_G0001108.1 mouse_genomes_project 3 51378743 51382919 + TEC TEC MGP_C3HHeJ_T0060714.1 MGP_C3HHeJ_G0026988.1 mouse_genomes_project 3 64192000 64204969 - MGP_C3HHeJ_P0060714 Ssr3 protein_coding protein_coding MGP_C3HHeJ_T0060715.1 MGP_C3HHeJ_G0026988.1 mouse_genomes_project 3 64194025 64195727 - Ssr3 protein_coding retained_intron MGP_C3HHeJ_T0060716.1 MGP_C3HHeJ_G0026988.1 mouse_genomes_project 3 64194375 64204899 - MGP_C3HHeJ_P0060716 Ssr3 protein_coding protein_coding MGP_C3HHeJ_T0014083.1 MGP_C3HHeJ_G0012187.1 mouse_genomes_project 3 109230508 109231037 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014017.1 MGP_C3HHeJ_G0012121.1 mouse_genomes_project 3 92808826 92809218 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060779.1 MGP_C3HHeJ_G0027003.1 mouse_genomes_project 3 66909515 67507186 + MGP_C3HHeJ_P0060779 Schip1 protein_coding protein_coding MGP_C3HHeJ_T0060780.1 MGP_C3HHeJ_G0027003.1 mouse_genomes_project 3 66909515 67507186 + MGP_C3HHeJ_P0060780 Schip1 protein_coding protein_coding MGP_C3HHeJ_T0060781.1 MGP_C3HHeJ_G0027003.1 mouse_genomes_project 3 67342456 67507203 + MGP_C3HHeJ_P0060781 Schip1 protein_coding protein_coding MGP_C3HHeJ_T0060782.1 MGP_C3HHeJ_G0027003.1 mouse_genomes_project 3 67368920 67499388 + MGP_C3HHeJ_P0060782 Schip1 protein_coding protein_coding MGP_C3HHeJ_T0060783.1 MGP_C3HHeJ_G0027003.1 mouse_genomes_project 3 67369637 67507185 + MGP_C3HHeJ_P0060783 Schip1 protein_coding protein_coding MGP_C3HHeJ_T0060784.1 MGP_C3HHeJ_G0027003.1 mouse_genomes_project 3 67452985 67507186 + MGP_C3HHeJ_P0060784 Schip1 protein_coding protein_coding MGP_C3HHeJ_T0060785.1 MGP_C3HHeJ_G0027003.1 mouse_genomes_project 3 67464950 67507186 + MGP_C3HHeJ_P0060785 Schip1 protein_coding protein_coding MGP_C3HHeJ_T0060786.1 MGP_C3HHeJ_G0027003.1 mouse_genomes_project 3 67476971 67478960 + Schip1 protein_coding retained_intron MGP_C3HHeJ_T0010435.1 MGP_C3HHeJ_G0008568.1 mouse_genomes_project 3 79929651 79929762 - Gm25749 miRNA miRNA MGP_C3HHeJ_T0004138.1 MGP_C3HHeJ_G0003642.1 mouse_genomes_project 3 28265336 28271721 + Gm15462 antisense antisense MGP_C3HHeJ_T0064011.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 154984253 155053345 + MGP_C3HHeJ_P0064011 Zzz3 protein_coding protein_coding MGP_C3HHeJ_T0064012.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 154984305 155020220 + Zzz3 protein_coding retained_intron MGP_C3HHeJ_T0064013.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 154984783 155056708 + MGP_C3HHeJ_P0064013 Zzz3 protein_coding protein_coding MGP_C3HHeJ_T0064014.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 154984812 155041288 + Zzz3 protein_coding processed_transcript MGP_C3HHeJ_T0064015.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 154984859 155040986 + Zzz3 protein_coding processed_transcript MGP_C3HHeJ_T0064016.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 154984911 155053423 + MGP_C3HHeJ_P0064016 Zzz3 protein_coding protein_coding MGP_C3HHeJ_T0064017.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 154985458 155053348 + MGP_C3HHeJ_P0064017 Zzz3 protein_coding protein_coding MGP_C3HHeJ_T0064018.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 154985468 155056708 + MGP_C3HHeJ_P0064018 Zzz3 protein_coding protein_coding MGP_C3HHeJ_T0064019.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 155028243 155031255 + Zzz3 protein_coding retained_intron MGP_C3HHeJ_T0064020.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 155051283 155052689 + Zzz3 protein_coding processed_transcript MGP_C3HHeJ_T0060037.1 MGP_C3HHeJ_G0026855.1 mouse_genomes_project 3 30250282 30290892 - MGP_C3HHeJ_P0060037 Gnb4 protein_coding protein_coding MGP_C3HHeJ_T0060038.1 MGP_C3HHeJ_G0026855.1 mouse_genomes_project 3 30253947 30290832 - Gnb4 protein_coding retained_intron MGP_C3HHeJ_T0060039.1 MGP_C3HHeJ_G0026855.1 mouse_genomes_project 3 30253947 30290824 - MGP_C3HHeJ_P0060039 Gnb4 protein_coding protein_coding MGP_C3HHeJ_T0060040.1 MGP_C3HHeJ_G0026855.1 mouse_genomes_project 3 30255010 30290829 - MGP_C3HHeJ_P0060040 Gnb4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060041.1 MGP_C3HHeJ_G0026855.1 mouse_genomes_project 3 30257677 30268152 - Gnb4 protein_coding retained_intron MGP_C3HHeJ_T0060042.1 MGP_C3HHeJ_G0026855.1 mouse_genomes_project 3 30261107 30290786 - MGP_C3HHeJ_P0060042 Gnb4 protein_coding protein_coding MGP_C3HHeJ_T0060043.1 MGP_C3HHeJ_G0026855.1 mouse_genomes_project 3 30262183 30290832 - Gnb4 protein_coding retained_intron MGP_C3HHeJ_T0060044.1 MGP_C3HHeJ_G0026855.1 mouse_genomes_project 3 30269808 30290836 - Gnb4 protein_coding retained_intron MGP_C3HHeJ_T0100574.1 MGP_C3HHeJ_G0038768.1 mouse_genomes_project 3 117324698 117324830 - Gm26344 snoRNA snoRNA MGP_C3HHeJ_T0063004.1 MGP_C3HHeJ_G0027509.1 mouse_genomes_project 3 117521266 117525120 - MGP_C3HHeJ_P0063004 Gpr88 protein_coding protein_coding MGP_C3HHeJ_T0063005.1 MGP_C3HHeJ_G0027509.1 mouse_genomes_project 3 117524175 117524706 - MGP_C3HHeJ_P0063005 Gpr88 protein_coding protein_coding MGP_C3HHeJ_T0063006.1 MGP_C3HHeJ_G0027509.1 mouse_genomes_project 3 117524288 117525080 - Gpr88 protein_coding processed_transcript MGP_C3HHeJ_T0062003.1 MGP_C3HHeJ_G0027280.1 mouse_genomes_project 3 95402866 95410793 + MGP_C3HHeJ_P0062003 Cdc42se1 protein_coding protein_coding MGP_C3HHeJ_T0062004.1 MGP_C3HHeJ_G0027280.1 mouse_genomes_project 3 95402944 95406765 + Cdc42se1 protein_coding retained_intron MGP_C3HHeJ_T0062005.1 MGP_C3HHeJ_G0027280.1 mouse_genomes_project 3 95403086 95408966 + MGP_C3HHeJ_P0062005 Cdc42se1 protein_coding protein_coding MGP_C3HHeJ_T0062007.1 MGP_C3HHeJ_G0027280.1 mouse_genomes_project 3 95406670 95408924 + MGP_C3HHeJ_P0062007 Cdc42se1 protein_coding protein_coding MGP_C3HHeJ_T0062008.1 MGP_C3HHeJ_G0027280.1 mouse_genomes_project 3 95406676 95409046 + MGP_C3HHeJ_P0062008 Cdc42se1 protein_coding protein_coding MGP_C3HHeJ_T0060748.1 MGP_C3HHeJ_G0026994.1 mouse_genomes_project 3 65798562 65808107 - MGP_C3HHeJ_P0060748 Shox2 protein_coding protein_coding MGP_C3HHeJ_T0060749.1 MGP_C3HHeJ_G0026994.1 mouse_genomes_project 3 65798571 65808163 - MGP_C3HHeJ_P0060749 Shox2 protein_coding protein_coding MGP_C3HHeJ_T0060750.1 MGP_C3HHeJ_G0026994.1 mouse_genomes_project 3 65798626 65808616 - MGP_C3HHeJ_P0060750 Shox2 protein_coding protein_coding MGP_C3HHeJ_T0060751.1 MGP_C3HHeJ_G0026994.1 mouse_genomes_project 3 65800742 65805658 - MGP_C3HHeJ_P0060751 Shox2 protein_coding protein_coding MGP_C3HHeJ_T0011438.1 MGP_C3HHeJ_G0009571.1 mouse_genomes_project 3 28172893 28173305 - 1600017P15Rik misc_RNA misc_RNA MGP_C3HHeJ_T0059653.1 MGP_C3HHeJ_G0026761.1 mouse_genomes_project 3 3814127 3819646 - MGP_C3HHeJ_P0059653 1700008P02Rik protein_coding protein_coding MGP_C3HHeJ_T0062797.1 MGP_C3HHeJ_G0027465.1 mouse_genomes_project 3 109024772 109029040 - MGP_C3HHeJ_P0062797 Gstm4 protein_coding protein_coding MGP_C3HHeJ_T0060403.1 MGP_C3HHeJ_G0026915.1 mouse_genomes_project 3 49869468 49893746 + Mgst2 protein_coding processed_transcript MGP_C3HHeJ_T0060404.1 MGP_C3HHeJ_G0026915.1 mouse_genomes_project 3 49871270 49887954 + Mgst2 protein_coding processed_transcript MGP_C3HHeJ_T0060405.1 MGP_C3HHeJ_G0026915.1 mouse_genomes_project 3 49871271 49894615 + MGP_C3HHeJ_P0060405 Mgst2 protein_coding protein_coding MGP_C3HHeJ_T0060406.1 MGP_C3HHeJ_G0026915.1 mouse_genomes_project 3 49871306 49894615 + MGP_C3HHeJ_P0060406 Mgst2 protein_coding protein_coding MGP_C3HHeJ_T0060407.1 MGP_C3HHeJ_G0026915.1 mouse_genomes_project 3 49871317 49894609 + MGP_C3HHeJ_P0060407 Mgst2 protein_coding protein_coding MGP_C3HHeJ_T0060408.1 MGP_C3HHeJ_G0026915.1 mouse_genomes_project 3 49881539 49894611 + Mgst2 protein_coding processed_transcript MGP_C3HHeJ_T0060409.1 MGP_C3HHeJ_G0026915.1 mouse_genomes_project 3 49881991 49894458 + Mgst2 protein_coding processed_transcript MGP_C3HHeJ_T0060410.1 MGP_C3HHeJ_G0026915.1 mouse_genomes_project 3 49886025 49894614 + Mgst2 protein_coding retained_intron MGP_C3HHeJ_T0060411.1 MGP_C3HHeJ_G0026915.1 mouse_genomes_project 3 49893555 49894617 + Mgst2 protein_coding retained_intron MGP_C3HHeJ_T0061975.1 MGP_C3HHeJ_G0027274.1 mouse_genomes_project 3 95295709 95302962 + MGP_C3HHeJ_P0061975 protein_coding protein_coding MGP_C3HHeJ_T0099240.1 MGP_C3HHeJ_G0037434.1 mouse_genomes_project 3 21949379 21949486 + Gm24704 snRNA snRNA MGP_C3HHeJ_T0013807.1 MGP_C3HHeJ_G0011911.1 mouse_genomes_project 3 19368026 19368459 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004221.1 MGP_C3HHeJ_G0003703.1 mouse_genomes_project 3 95391543 95400793 + Gm16740 antisense antisense MGP_C3HHeJ_T0061752.1 MGP_C3HHeJ_G0027189.1 mouse_genomes_project 3 90226297 90230269 + MGP_C3HHeJ_P0061752 Gm42674 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060947.1 MGP_C3HHeJ_G0027039.1 mouse_genomes_project 3 81173228 81198226 + MGP_C3HHeJ_P0060947 Ctso protein_coding protein_coding MGP_C3HHeJ_T0060948.1 MGP_C3HHeJ_G0027039.1 mouse_genomes_project 3 81173250 81173952 + Ctso protein_coding retained_intron MGP_C3HHeJ_T0060949.1 MGP_C3HHeJ_G0027039.1 mouse_genomes_project 3 81173269 81183677 + Ctso protein_coding processed_transcript MGP_C3HHeJ_T0060950.1 MGP_C3HHeJ_G0027039.1 mouse_genomes_project 3 81191318 81195803 + Ctso protein_coding retained_intron MGP_C3HHeJ_T0013879.1 MGP_C3HHeJ_G0011983.1 mouse_genomes_project 3 47842311 47842731 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064000.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154933515 154982413 + MGP_C3HHeJ_P0064000 Usp33 protein_coding protein_coding MGP_C3HHeJ_T0064001.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154933515 154982134 + MGP_C3HHeJ_P0064001 Usp33 protein_coding protein_coding MGP_C3HHeJ_T0064002.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154933526 154982418 + MGP_C3HHeJ_P0064002 Usp33 protein_coding protein_coding MGP_C3HHeJ_T0064003.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154933549 154960070 + MGP_C3HHeJ_P0064003 Usp33 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064004.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154933552 154946491 + Usp33 protein_coding retained_intron MGP_C3HHeJ_T0064005.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154950058 154956656 + Usp33 protein_coding processed_transcript MGP_C3HHeJ_T0064006.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154952070 154955321 + Usp33 protein_coding retained_intron MGP_C3HHeJ_T0064007.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154954446 154961791 + Usp33 protein_coding retained_intron MGP_C3HHeJ_T0064008.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154956594 154963161 + MGP_C3HHeJ_P0064008 Usp33 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064009.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154970233 154981308 + Usp33 protein_coding processed_transcript MGP_C3HHeJ_T0064010.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154970721 154972440 + Usp33 protein_coding retained_intron MGP_C3HHeJ_T0061568.1 MGP_C3HHeJ_G0027160.1 mouse_genomes_project 3 89308798 89327176 - MGP_C3HHeJ_P0061568 Chrnb2 protein_coding protein_coding MGP_C3HHeJ_T0061569.1 MGP_C3HHeJ_G0027160.1 mouse_genomes_project 3 89314998 89325969 - Chrnb2 protein_coding processed_transcript MGP_C3HHeJ_T0061570.1 MGP_C3HHeJ_G0027160.1 mouse_genomes_project 3 89319665 89328337 - MGP_C3HHeJ_P0061570 Chrnb2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0063043.1 MGP_C3HHeJ_G0027516.1 mouse_genomes_project 3 117924579 117957510 - MGP_C3HHeJ_P0063043 Mfsd14a protein_coding protein_coding MGP_C3HHeJ_T0063044.1 MGP_C3HHeJ_G0027516.1 mouse_genomes_project 3 117926016 117929904 - Mfsd14a protein_coding retained_intron MGP_C3HHeJ_T0063045.1 MGP_C3HHeJ_G0027516.1 mouse_genomes_project 3 117934760 117939198 - Mfsd14a protein_coding retained_intron MGP_C3HHeJ_T0063047.1 MGP_C3HHeJ_G0027516.1 mouse_genomes_project 3 117941584 117957324 - Mfsd14a protein_coding retained_intron MGP_C3HHeJ_T0063048.1 MGP_C3HHeJ_G0027516.1 mouse_genomes_project 3 117944344 117957443 - Mfsd14a protein_coding retained_intron MGP_C3HHeJ_T0063885.1 MGP_C3HHeJ_G0027678.1 mouse_genomes_project 3 149012023 149018173 - MGP_C3HHeJ_P0063885 4930503B20Rik protein_coding protein_coding MGP_C3HHeJ_T0063890.1 MGP_C3HHeJ_G0027678.1 mouse_genomes_project 3 149013108 149015162 - 4930503B20Rik protein_coding processed_transcript MGP_C3HHeJ_T0063891.1 MGP_C3HHeJ_G0027678.1 mouse_genomes_project 3 149016421 149018171 - MGP_C3HHeJ_P0063891 4930503B20Rik protein_coding protein_coding MGP_C3HHeJ_T0004189.1 MGP_C3HHeJ_G0003681.1 mouse_genomes_project 3 79414983 79418084 - Gm37892 antisense antisense MGP_C3HHeJ_T0101963.1 MGP_C3HHeJ_G0039928.1 mouse_genomes_project 3 92940645 92940870 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014181.1 MGP_C3HHeJ_G0012285.1 mouse_genomes_project 3 140618603 140619270 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060089.1 MGP_C3HHeJ_G0026862.1 mouse_genomes_project 3 31536755 31569875 - MGP_C3HHeJ_P0060089 Ccdc39 protein_coding protein_coding MGP_C3HHeJ_T0060090.1 MGP_C3HHeJ_G0026862.1 mouse_genomes_project 3 31537444 31538942 - Ccdc39 protein_coding retained_intron MGP_C3HHeJ_T0060091.1 MGP_C3HHeJ_G0026862.1 mouse_genomes_project 3 31543047 31569875 - Ccdc39 protein_coding retained_intron MGP_C3HHeJ_T0060092.1 MGP_C3HHeJ_G0026862.1 mouse_genomes_project 3 31544595 31569639 - Ccdc39 protein_coding retained_intron MGP_C3HHeJ_T0060093.1 MGP_C3HHeJ_G0026862.1 mouse_genomes_project 3 31549283 31551237 - Ccdc39 protein_coding retained_intron MGP_C3HHeJ_T0060094.1 MGP_C3HHeJ_G0026862.1 mouse_genomes_project 3 31563564 31569884 - Ccdc39 protein_coding retained_intron MGP_C3HHeJ_T0001203.1 MGP_C3HHeJ_G0001135.1 mouse_genomes_project 3 64914270 64915379 + TEC TEC MGP_C3HHeJ_T0062016.1 MGP_C3HHeJ_G0027283.1 mouse_genomes_project 3 95428010 95457834 - MGP_C3HHeJ_P0062016 Prune protein_coding protein_coding MGP_C3HHeJ_T0062017.1 MGP_C3HHeJ_G0027283.1 mouse_genomes_project 3 95439284 95443072 - Prune protein_coding retained_intron MGP_C3HHeJ_T0001317.1 MGP_C3HHeJ_G0001248.1 mouse_genomes_project 3 132853251 132855799 - TEC TEC MGP_C3HHeJ_T0061761.1 MGP_C3HHeJ_G0027193.1 mouse_genomes_project 3 90279503 90283870 + MGP_C3HHeJ_P0061761 S100a7a protein_coding protein_coding MGP_C3HHeJ_T0007503.1 MGP_C3HHeJ_G0006138.1 mouse_genomes_project 3 81039943 81043079 + A830029E22Rik lincRNA lincRNA MGP_C3HHeJ_T0014043.1 MGP_C3HHeJ_G0012147.1 mouse_genomes_project 3 99389690 99389876 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001277.1 MGP_C3HHeJ_G0001209.1 mouse_genomes_project 3 124787296 124789893 - TEC TEC MGP_C3HHeJ_T0062716.1 MGP_C3HHeJ_G0027441.1 mouse_genomes_project 3 107969962 107974314 + MGP_C3HHeJ_P0062716 Kcna3 protein_coding protein_coding MGP_C3HHeJ_T0014037.1 MGP_C3HHeJ_G0012141.1 mouse_genomes_project 3 96666862 96669057 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001349.1 MGP_C3HHeJ_G0001280.1 mouse_genomes_project 3 155586051 155587036 + TEC TEC MGP_C3HHeJ_T0013973.1 MGP_C3HHeJ_G0012077.1 mouse_genomes_project 3 76749428 76750699 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060901.1 MGP_C3HHeJ_G0027030.1 mouse_genomes_project 3 78802794 78815748 + Ppid protein_coding retained_intron MGP_C3HHeJ_T0060902.1 MGP_C3HHeJ_G0027030.1 mouse_genomes_project 3 78802817 78816122 + MGP_C3HHeJ_P0060902 Ppid protein_coding protein_coding MGP_C3HHeJ_T0060903.1 MGP_C3HHeJ_G0027030.1 mouse_genomes_project 3 78802940 78806760 + Ppid protein_coding processed_transcript MGP_C3HHeJ_T0060904.1 MGP_C3HHeJ_G0027030.1 mouse_genomes_project 3 78805141 78809213 + MGP_C3HHeJ_P0060904 Ppid protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060905.1 MGP_C3HHeJ_G0027030.1 mouse_genomes_project 3 78807608 78809640 + Ppid protein_coding retained_intron MGP_C3HHeJ_T0060906.1 MGP_C3HHeJ_G0027030.1 mouse_genomes_project 3 78810160 78813795 + Ppid protein_coding retained_intron MGP_C3HHeJ_T0099318.1 MGP_C3HHeJ_G0037512.1 mouse_genomes_project 3 154520538 154520600 - Gm25056 snRNA snRNA MGP_C3HHeJ_T0059698.1 MGP_C3HHeJ_G0026776.1 mouse_genomes_project 3 7535920 7540409 - MGP_C3HHeJ_P0059698 Fabp4 protein_coding protein_coding MGP_C3HHeJ_T0059699.1 MGP_C3HHeJ_G0026776.1 mouse_genomes_project 3 7536160 7540391 - Fabp4 protein_coding retained_intron MGP_C3HHeJ_T0063330.1 MGP_C3HHeJ_G0027565.1 mouse_genomes_project 3 129462917 129471474 + MGP_C3HHeJ_P0063330 Tifa protein_coding protein_coding MGP_C3HHeJ_T0063331.1 MGP_C3HHeJ_G0027565.1 mouse_genomes_project 3 129463022 129509802 + Tifa protein_coding processed_transcript MGP_C3HHeJ_T0063332.1 MGP_C3HHeJ_G0027565.1 mouse_genomes_project 3 129463024 129471043 + MGP_C3HHeJ_P0063332 Tifa protein_coding protein_coding MGP_C3HHeJ_T0063333.1 MGP_C3HHeJ_G0027565.1 mouse_genomes_project 3 129463752 129471043 + MGP_C3HHeJ_P0063333 Tifa protein_coding protein_coding MGP_C3HHeJ_T0063334.1 MGP_C3HHeJ_G0027565.1 mouse_genomes_project 3 129463901 129471474 + MGP_C3HHeJ_P0063334 Tifa protein_coding protein_coding MGP_C3HHeJ_T0001197.1 MGP_C3HHeJ_G0001129.1 mouse_genomes_project 3 59107717 59111082 + TEC TEC MGP_C3HHeJ_T0007485.1 MGP_C3HHeJ_G0006124.1 mouse_genomes_project 3 69685290 69725477 - Gm6634 lincRNA lincRNA MGP_C3HHeJ_T0063382.1 MGP_C3HHeJ_G0027574.1 mouse_genomes_project 3 131602656 131609198 - MGP_C3HHeJ_P0063382 Gar1 protein_coding protein_coding MGP_C3HHeJ_T0063383.1 MGP_C3HHeJ_G0027574.1 mouse_genomes_project 3 131602660 131607169 - MGP_C3HHeJ_P0063383 Gar1 protein_coding protein_coding MGP_C3HHeJ_T0063384.1 MGP_C3HHeJ_G0027574.1 mouse_genomes_project 3 131602663 131603418 - Gar1 protein_coding retained_intron MGP_C3HHeJ_T0063385.1 MGP_C3HHeJ_G0027574.1 mouse_genomes_project 3 131603292 131605036 - Gar1 protein_coding retained_intron MGP_C3HHeJ_T0063386.1 MGP_C3HHeJ_G0027574.1 mouse_genomes_project 3 131603311 131609162 - Gar1 protein_coding processed_transcript MGP_C3HHeJ_T0063387.1 MGP_C3HHeJ_G0027574.1 mouse_genomes_project 3 131604592 131608735 - MGP_C3HHeJ_P0063387 Gar1 protein_coding protein_coding MGP_C3HHeJ_T0001310.1 MGP_C3HHeJ_G0001241.1 mouse_genomes_project 3 131307589 131309260 + TEC TEC MGP_C3HHeJ_T0060580.1 MGP_C3HHeJ_G0026952.1 mouse_genomes_project 3 56945783 56979045 + MGP_C3HHeJ_P0060580 Eif2a protein_coding protein_coding MGP_C3HHeJ_T0060581.1 MGP_C3HHeJ_G0026952.1 mouse_genomes_project 3 56946004 56967613 + Eif2a protein_coding retained_intron MGP_C3HHeJ_T0060582.1 MGP_C3HHeJ_G0026952.1 mouse_genomes_project 3 56946005 56977186 + MGP_C3HHeJ_P0060582 Eif2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060583.1 MGP_C3HHeJ_G0026952.1 mouse_genomes_project 3 56946018 56979045 + MGP_C3HHeJ_P0060583 Eif2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060584.1 MGP_C3HHeJ_G0026952.1 mouse_genomes_project 3 56946265 56967378 + MGP_C3HHeJ_P0060584 Eif2a protein_coding protein_coding MGP_C3HHeJ_T0060585.1 MGP_C3HHeJ_G0026952.1 mouse_genomes_project 3 56964901 56967613 + Eif2a protein_coding retained_intron MGP_C3HHeJ_T0060586.1 MGP_C3HHeJ_G0026952.1 mouse_genomes_project 3 56966015 56972230 + Eif2a protein_coding retained_intron MGP_C3HHeJ_T0013931.1 MGP_C3HHeJ_G0012035.1 mouse_genomes_project 3 64794220 64794470 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099271.1 MGP_C3HHeJ_G0037465.1 mouse_genomes_project 3 85781526 85781695 + Gm23850 snRNA snRNA MGP_C3HHeJ_T0059959.1 MGP_C3HHeJ_G0026837.1 mouse_genomes_project 3 28202809 28226527 - MGP_C3HHeJ_P0059959 Lrrc34 protein_coding protein_coding MGP_C3HHeJ_T0010427.1 MGP_C3HHeJ_G0008560.1 mouse_genomes_project 3 36451776 36451882 - Gm24462 miRNA miRNA MGP_C3HHeJ_T0061806.1 MGP_C3HHeJ_G0027231.1 mouse_genomes_project 3 92666745 92668346 - MGP_C3HHeJ_P0061806 Lce1k protein_coding protein_coding MGP_C3HHeJ_T0007569.1 MGP_C3HHeJ_G0006188.1 mouse_genomes_project 3 106682255 106684092 + Gm5547 lincRNA lincRNA MGP_C3HHeJ_T0007570.1 MGP_C3HHeJ_G0006188.1 mouse_genomes_project 3 106682282 106684085 + Gm5547 lincRNA lincRNA MGP_C3HHeJ_T0007571.1 MGP_C3HHeJ_G0006188.1 mouse_genomes_project 3 106683344 106684093 + Gm5547 lincRNA lincRNA MGP_C3HHeJ_T0063485.1 MGP_C3HHeJ_G0027596.1 mouse_genomes_project 3 134892546 134915926 + MGP_C3HHeJ_P0063485 Ints12 protein_coding protein_coding MGP_C3HHeJ_T0063486.1 MGP_C3HHeJ_G0027596.1 mouse_genomes_project 3 134892644 134902801 + Ints12 protein_coding retained_intron MGP_C3HHeJ_T0063487.1 MGP_C3HHeJ_G0027596.1 mouse_genomes_project 3 134901093 134912023 + Ints12 protein_coding processed_transcript MGP_C3HHeJ_T0059952.1 MGP_C3HHeJ_G0026835.1 mouse_genomes_project 3 28174622 28177481 - MGP_C3HHeJ_P0059952 Actrt3 protein_coding protein_coding MGP_C3HHeJ_T0007390.1 MGP_C3HHeJ_G0006049.1 mouse_genomes_project 3 17216387 17217470 + 4632415L05Rik lincRNA lincRNA MGP_C3HHeJ_T0007391.1 MGP_C3HHeJ_G0006049.1 mouse_genomes_project 3 17216399 17220328 + 4632415L05Rik lincRNA lincRNA MGP_C3HHeJ_T0061147.1 MGP_C3HHeJ_G0027087.1 mouse_genomes_project 3 87351878 87379011 - MGP_C3HHeJ_P0061147 Prcc protein_coding protein_coding MGP_C3HHeJ_T0098410.1 MGP_C3HHeJ_G0036615.1 mouse_genomes_project 3 94478200 94492305 + sense_intronic sense_intronic MGP_C3HHeJ_T0004296.1 MGP_C3HHeJ_G0003748.1 mouse_genomes_project 3 129514604 129516347 + Gm43653 antisense antisense MGP_C3HHeJ_T0098120.1 MGP_C3HHeJ_G0036332.1 mouse_genomes_project 3 22970246 22970354 + Gm22832 rRNA rRNA MGP_C3HHeJ_T0064175.1 MGP_C3HHeJ_G0027718.1 mouse_genomes_project 3 162289183 162324993 + MGP_C3HHeJ_P0064175 Depdc1a protein_coding protein_coding MGP_C3HHeJ_T0064176.1 MGP_C3HHeJ_G0027718.1 mouse_genomes_project 3 162289201 162324614 + MGP_C3HHeJ_P0064176 Depdc1a protein_coding protein_coding MGP_C3HHeJ_T0064177.1 MGP_C3HHeJ_G0027718.1 mouse_genomes_project 3 162289208 162324497 + MGP_C3HHeJ_P0064177 Depdc1a protein_coding protein_coding MGP_C3HHeJ_T0060627.1 MGP_C3HHeJ_G0026965.1 mouse_genomes_project 3 58319838 58337280 + protein_coding unprocessed_pseudogene MGP_C3HHeJ_T0001237.1 MGP_C3HHeJ_G0001169.1 mouse_genomes_project 3 97601151 97604435 + TEC TEC MGP_C3HHeJ_T0007637.1 MGP_C3HHeJ_G0006242.1 mouse_genomes_project 3 139265051 139275884 + Gm567 lincRNA lincRNA MGP_C3HHeJ_T0062679.1 MGP_C3HHeJ_G0027434.1 mouse_genomes_project 3 107310768 107329535 - MGP_C3HHeJ_P0062679 Chil6 protein_coding protein_coding MGP_C3HHeJ_T0007705.1 MGP_C3HHeJ_G0006293.1 mouse_genomes_project 3 160500722 160506768 - Gm33466 lincRNA lincRNA MGP_C3HHeJ_T0100532.1 MGP_C3HHeJ_G0038726.1 mouse_genomes_project 3 39330163 39330288 - Gm25487 snoRNA snoRNA MGP_C3HHeJ_T0099248.1 MGP_C3HHeJ_G0037442.1 mouse_genomes_project 3 47137609 47137774 + Gm23511 snRNA snRNA MGP_C3HHeJ_T0062331.1 MGP_C3HHeJ_G0027353.1 mouse_genomes_project 3 98600782 98615381 + MGP_C3HHeJ_P0062331 Reg4 protein_coding protein_coding MGP_C3HHeJ_T0007452.1 MGP_C3HHeJ_G0006098.1 mouse_genomes_project 3 49230724 49247651 - Gm29230 lincRNA lincRNA MGP_C3HHeJ_T0098445.1 MGP_C3HHeJ_G0036650.1 mouse_genomes_project 3 104983044 104986321 - Gm43259 sense_intronic sense_intronic MGP_C3HHeJ_T0013778.1 MGP_C3HHeJ_G0011882.1 mouse_genomes_project 3 11741672 11741812 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063644.1 MGP_C3HHeJ_G0027626.1 mouse_genomes_project 3 140211430 140227076 + MGP_C3HHeJ_P0063644 Adh7 protein_coding protein_coding MGP_C3HHeJ_T0063645.1 MGP_C3HHeJ_G0027626.1 mouse_genomes_project 3 140215134 140216751 + Adh7 protein_coding retained_intron MGP_C3HHeJ_T0063646.1 MGP_C3HHeJ_G0027626.1 mouse_genomes_project 3 140221712 140225103 + Adh7 protein_coding processed_transcript MGP_C3HHeJ_T0061764.1 MGP_C3HHeJ_G0027195.1 mouse_genomes_project 3 90320127 90323199 - MGP_C3HHeJ_P0061764 S100a9 protein_coding protein_coding MGP_C3HHeJ_T0061765.1 MGP_C3HHeJ_G0027195.1 mouse_genomes_project 3 90320127 90323209 - MGP_C3HHeJ_P0061765 S100a9 protein_coding protein_coding MGP_C3HHeJ_T0014042.1 MGP_C3HHeJ_G0012146.1 mouse_genomes_project 3 98627116 98627605 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100583.1 MGP_C3HHeJ_G0038777.1 mouse_genomes_project 3 134593046 134593157 - Gm22322 snoRNA snoRNA MGP_C3HHeJ_T0007699.1 MGP_C3HHeJ_G0006290.1 mouse_genomes_project 3 158697941 158731147 + 9330178D15Rik lincRNA lincRNA MGP_C3HHeJ_T0099284.1 MGP_C3HHeJ_G0037478.1 mouse_genomes_project 3 96025551 96025737 - Gm26361 snRNA snRNA MGP_C3HHeJ_T0060308.1 MGP_C3HHeJ_G0026900.1 mouse_genomes_project 3 38959867 38977239 - MGP_C3HHeJ_P0060308 Pgrmc2 protein_coding protein_coding MGP_C3HHeJ_T0060309.1 MGP_C3HHeJ_G0026900.1 mouse_genomes_project 3 38962061 38964212 - Pgrmc2 protein_coding retained_intron MGP_C3HHeJ_T0007505.1 MGP_C3HHeJ_G0006140.1 mouse_genomes_project 3 82057285 82075659 - Gm43348 lincRNA lincRNA MGP_C3HHeJ_T0007502.1 MGP_C3HHeJ_G0006137.1 mouse_genomes_project 3 80287259 80288070 + Gm42476 lincRNA lincRNA MGP_C3HHeJ_T0001171.1 MGP_C3HHeJ_G0001103.1 mouse_genomes_project 3 50280373 50287330 - TEC TEC MGP_C3HHeJ_T0010453.1 MGP_C3HHeJ_G0008586.1 mouse_genomes_project 3 96470727 96470868 + Gm44492 miRNA miRNA MGP_C3HHeJ_T0062857.1 MGP_C3HHeJ_G0027479.1 mouse_genomes_project 3 109431310 109452661 - MGP_C3HHeJ_P0062857 Sars protein_coding protein_coding MGP_C3HHeJ_T0062858.1 MGP_C3HHeJ_G0027479.1 mouse_genomes_project 3 109433057 109452632 - MGP_C3HHeJ_P0062858 Sars protein_coding protein_coding MGP_C3HHeJ_T0062859.1 MGP_C3HHeJ_G0027479.1 mouse_genomes_project 3 109434676 109452606 - MGP_C3HHeJ_P0062859 Sars protein_coding protein_coding MGP_C3HHeJ_T0062860.1 MGP_C3HHeJ_G0027479.1 mouse_genomes_project 3 109435795 109452672 - MGP_C3HHeJ_P0062860 Sars protein_coding protein_coding MGP_C3HHeJ_T0062861.1 MGP_C3HHeJ_G0027479.1 mouse_genomes_project 3 109440828 109452619 - Sars protein_coding retained_intron MGP_C3HHeJ_T0004313.1 MGP_C3HHeJ_G0003760.1 mouse_genomes_project 3 139868082 139870285 - Gm43087 antisense antisense MGP_C3HHeJ_T0001204.1 MGP_C3HHeJ_G0001136.1 mouse_genomes_project 3 66306159 66308000 + TEC TEC MGP_C3HHeJ_T0063729.1 MGP_C3HHeJ_G0027643.1 mouse_genomes_project 3 144687200 144724973 + MGP_C3HHeJ_P0063729 Gbp2b protein_coding protein_coding MGP_C3HHeJ_T0007565.1 MGP_C3HHeJ_G0006184.1 mouse_genomes_project 3 103818060 103819374 + Gm43062 lincRNA lincRNA MGP_C3HHeJ_T0011454.1 MGP_C3HHeJ_G0009587.1 mouse_genomes_project 3 122845483 122845751 + Gm26027 misc_RNA misc_RNA MGP_C3HHeJ_T0004242.1 MGP_C3HHeJ_G0003716.1 mouse_genomes_project 3 102095446 102096485 - Gm42538 antisense antisense MGP_C3HHeJ_T0004243.1 MGP_C3HHeJ_G0003716.1 mouse_genomes_project 3 102096105 102097776 - Gm42538 antisense antisense MGP_C3HHeJ_T0060705.1 MGP_C3HHeJ_G0026985.1 mouse_genomes_project 3 62905899 62937892 - MGP_C3HHeJ_P0060705 Vmn2r3 protein_coding protein_coding MGP_C3HHeJ_T0060706.1 MGP_C3HHeJ_G0026985.1 mouse_genomes_project 3 62906063 62937970 - MGP_C3HHeJ_P0060706 Vmn2r3 protein_coding protein_coding MGP_C3HHeJ_T0013739.1 MGP_C3HHeJ_G0011843.1 mouse_genomes_project 3 941281 942055 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100524.1 MGP_C3HHeJ_G0038718.1 mouse_genomes_project 3 19770406 19770535 - Gm26354 snoRNA snoRNA MGP_C3HHeJ_T0007566.1 MGP_C3HHeJ_G0006185.1 mouse_genomes_project 3 105168319 105184298 - Gm5546 lincRNA lincRNA MGP_C3HHeJ_T0061824.1 MGP_C3HHeJ_G0027244.1 mouse_genomes_project 3 93170501 93175018 + Flg protein_coding TEC MGP_C3HHeJ_T0061825.1 MGP_C3HHeJ_G0027244.1 mouse_genomes_project 3 93170519 93177283 + MGP_C3HHeJ_P0061825 Flg protein_coding protein_coding MGP_C3HHeJ_T0061826.1 MGP_C3HHeJ_G0027244.1 mouse_genomes_project 3 93174540 93177283 + MGP_C3HHeJ_P0061826 Flg protein_coding protein_coding MGP_C3HHeJ_T0060994.1 MGP_C3HHeJ_G0027054.1 mouse_genomes_project 3 83148213 83153709 - MGP_C3HHeJ_P0060994 Tlr2 protein_coding protein_coding MGP_C3HHeJ_T0007410.1 MGP_C3HHeJ_G0006067.1 mouse_genomes_project 3 32156499 32158167 + Gm43208 lincRNA lincRNA MGP_C3HHeJ_T0001168.1 MGP_C3HHeJ_G0001100.1 mouse_genomes_project 3 50209478 50211695 - TEC TEC MGP_C3HHeJ_T0062777.1 MGP_C3HHeJ_G0027460.1 mouse_genomes_project 3 108902538 108908020 - MGP_C3HHeJ_P0062777 Gstm7 protein_coding protein_coding MGP_C3HHeJ_T0062778.1 MGP_C3HHeJ_G0027460.1 mouse_genomes_project 3 108902911 108907870 - MGP_C3HHeJ_P0062778 Gstm7 protein_coding protein_coding MGP_C3HHeJ_T0062779.1 MGP_C3HHeJ_G0027460.1 mouse_genomes_project 3 108903014 108907817 - MGP_C3HHeJ_P0062779 Gstm7 protein_coding protein_coding MGP_C3HHeJ_T0062780.1 MGP_C3HHeJ_G0027460.1 mouse_genomes_project 3 108905267 108907782 - MGP_C3HHeJ_P0062780 Gstm7 protein_coding protein_coding MGP_C3HHeJ_T0062781.1 MGP_C3HHeJ_G0027460.1 mouse_genomes_project 3 108905336 108907813 - MGP_C3HHeJ_P0062781 Gstm7 protein_coding protein_coding MGP_C3HHeJ_T0063823.1 MGP_C3HHeJ_G0027663.1 mouse_genomes_project 3 148084149 148223675 + MGP_C3HHeJ_P0063823 Ddah1 protein_coding protein_coding MGP_C3HHeJ_T0063824.1 MGP_C3HHeJ_G0027663.1 mouse_genomes_project 3 148140047 148218783 + Ddah1 protein_coding processed_transcript MGP_C3HHeJ_T0013895.1 MGP_C3HHeJ_G0011999.1 mouse_genomes_project 3 52331134 52331542 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063629.1 MGP_C3HHeJ_G0027622.1 mouse_genomes_project 3 140061720 140078212 + MGP_C3HHeJ_P0063629 1110002E22Rik protein_coding protein_coding MGP_C3HHeJ_T0063630.1 MGP_C3HHeJ_G0027622.1 mouse_genomes_project 3 140068292 140074066 + 1110002E22Rik protein_coding processed_transcript MGP_C3HHeJ_T0062422.1 MGP_C3HHeJ_G0027380.1 mouse_genomes_project 3 102703937 102708587 + MGP_C3HHeJ_P0062422 Nhlh2 protein_coding protein_coding MGP_C3HHeJ_T0062423.1 MGP_C3HHeJ_G0027380.1 mouse_genomes_project 3 102704007 102709362 + MGP_C3HHeJ_P0062423 Nhlh2 protein_coding protein_coding MGP_C3HHeJ_T0062424.1 MGP_C3HHeJ_G0027380.1 mouse_genomes_project 3 102704016 102708367 + MGP_C3HHeJ_P0062424 Nhlh2 protein_coding protein_coding MGP_C3HHeJ_T0063314.1 MGP_C3HHeJ_G0027561.1 mouse_genomes_project 3 129205029 129221233 - MGP_C3HHeJ_P0063314 protein_coding protein_coding MGP_C3HHeJ_T0063315.1 MGP_C3HHeJ_G0027561.1 mouse_genomes_project 3 129215120 129221231 - MGP_C3HHeJ_P0063315 protein_coding protein_coding MGP_C3HHeJ_T0004173.1 MGP_C3HHeJ_G0003668.1 mouse_genomes_project 3 54240627 54283197 + Gm43376 antisense antisense MGP_C3HHeJ_T0004174.1 MGP_C3HHeJ_G0003668.1 mouse_genomes_project 3 54240698 54242585 + Gm43376 antisense antisense MGP_C3HHeJ_T0013765.1 MGP_C3HHeJ_G0011869.1 mouse_genomes_project 3 7646224 7646403 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014123.1 MGP_C3HHeJ_G0012227.1 mouse_genomes_project 3 123394147 123394524 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007558.1 MGP_C3HHeJ_G0006179.1 mouse_genomes_project 3 102963638 102964234 + Gm43241 lincRNA lincRNA MGP_C3HHeJ_T0061454.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88749819 88763080 + MGP_C3HHeJ_P0061454 Thbs3 protein_coding protein_coding MGP_C3HHeJ_T0061455.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88749844 88752707 + MGP_C3HHeJ_P0061455 Thbs3 protein_coding protein_coding MGP_C3HHeJ_T0061456.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88749866 88763080 + Thbs3 protein_coding retained_intron MGP_C3HHeJ_T0061457.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88749872 88763047 + MGP_C3HHeJ_P0061457 Thbs3 protein_coding protein_coding MGP_C3HHeJ_T0061458.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88752040 88753711 + Thbs3 protein_coding retained_intron MGP_C3HHeJ_T0061459.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88755575 88759409 + Thbs3 protein_coding processed_transcript MGP_C3HHeJ_T0061461.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88760373 88761795 + Thbs3 protein_coding retained_intron MGP_C3HHeJ_T0061462.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88760522 88762946 + MGP_C3HHeJ_P0061462 Thbs3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061463.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88760563 88761663 + Thbs3 protein_coding retained_intron MGP_C3HHeJ_T0061464.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88761414 88762806 + Thbs3 protein_coding retained_intron MGP_C3HHeJ_T0061465.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88762492 88763029 + Thbs3 protein_coding retained_intron MGP_C3HHeJ_T0063530.1 MGP_C3HHeJ_G0027605.1 mouse_genomes_project 3 137241115 137267625 + MGP_C3HHeJ_P0063530 Slc9b1 protein_coding protein_coding MGP_C3HHeJ_T0063531.1 MGP_C3HHeJ_G0027605.1 mouse_genomes_project 3 137241120 137293493 + MGP_C3HHeJ_P0063531 Slc9b1 protein_coding protein_coding MGP_C3HHeJ_T0063532.1 MGP_C3HHeJ_G0027605.1 mouse_genomes_project 3 137241132 137252187 + Slc9b1 protein_coding retained_intron MGP_C3HHeJ_T0063533.1 MGP_C3HHeJ_G0027605.1 mouse_genomes_project 3 137241132 137252426 + Slc9b1 protein_coding retained_intron MGP_C3HHeJ_T0063534.1 MGP_C3HHeJ_G0027605.1 mouse_genomes_project 3 137241144 137288748 + Slc9b1 protein_coding processed_transcript MGP_C3HHeJ_T0063535.1 MGP_C3HHeJ_G0027605.1 mouse_genomes_project 3 137241416 137270347 + Slc9b1 protein_coding retained_intron MGP_C3HHeJ_T0063536.1 MGP_C3HHeJ_G0027605.1 mouse_genomes_project 3 137268567 137270071 + Slc9b1 protein_coding retained_intron MGP_C3HHeJ_T0063537.1 MGP_C3HHeJ_G0027605.1 mouse_genomes_project 3 137278603 137293490 + MGP_C3HHeJ_P0063537 Slc9b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063538.1 MGP_C3HHeJ_G0027605.1 mouse_genomes_project 3 137289669 137293490 + Slc9b1 protein_coding processed_transcript MGP_C3HHeJ_T0061491.1 MGP_C3HHeJ_G0027144.1 mouse_genomes_project 3 88811523 88819416 - MGP_C3HHeJ_P0061491 Efna1 protein_coding protein_coding MGP_C3HHeJ_T0061492.1 MGP_C3HHeJ_G0027144.1 mouse_genomes_project 3 88812275 88819317 - MGP_C3HHeJ_P0061492 Efna1 protein_coding protein_coding MGP_C3HHeJ_T0014213.1 MGP_C3HHeJ_G0012317.1 mouse_genomes_project 3 155494668 155494835 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063521.1 MGP_C3HHeJ_G0027603.1 mouse_genomes_project 3 137172595 137196878 + MGP_C3HHeJ_P0063521 Bdh2 protein_coding protein_coding MGP_C3HHeJ_T0063522.1 MGP_C3HHeJ_G0027603.1 mouse_genomes_project 3 137172635 137196878 + MGP_C3HHeJ_P0063522 Bdh2 protein_coding protein_coding MGP_C3HHeJ_T0063523.1 MGP_C3HHeJ_G0027603.1 mouse_genomes_project 3 137172657 137175791 + Bdh2 protein_coding retained_intron MGP_C3HHeJ_T0063524.1 MGP_C3HHeJ_G0027603.1 mouse_genomes_project 3 137179974 137196875 + Bdh2 protein_coding processed_transcript MGP_C3HHeJ_T0001356.1 MGP_C3HHeJ_G0001287.1 mouse_genomes_project 3 159401787 159404355 + TEC TEC MGP_C3HHeJ_T0013784.1 MGP_C3HHeJ_G0011888.1 mouse_genomes_project 3 12388127 12389111 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059759.1 MGP_C3HHeJ_G0026798.1 mouse_genomes_project 3 13456221 13490507 + MGP_C3HHeJ_P0059759 Ythdf3 protein_coding protein_coding MGP_C3HHeJ_T0059760.1 MGP_C3HHeJ_G0026798.1 mouse_genomes_project 3 13456245 13477417 + Ythdf3 protein_coding processed_transcript MGP_C3HHeJ_T0059761.1 MGP_C3HHeJ_G0026798.1 mouse_genomes_project 3 13456245 13488475 + MGP_C3HHeJ_P0059761 Ythdf3 protein_coding protein_coding MGP_C3HHeJ_T0059762.1 MGP_C3HHeJ_G0026798.1 mouse_genomes_project 3 13456245 13490325 + MGP_C3HHeJ_P0059762 Ythdf3 protein_coding protein_coding MGP_C3HHeJ_T0013970.1 MGP_C3HHeJ_G0012074.1 mouse_genomes_project 3 75179717 75180508 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014075.1 MGP_C3HHeJ_G0012179.1 mouse_genomes_project 3 106972277 106972593 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001322.1 MGP_C3HHeJ_G0001253.1 mouse_genomes_project 3 134855434 134857208 - TEC TEC MGP_C3HHeJ_T0007587.1 MGP_C3HHeJ_G0006202.1 mouse_genomes_project 3 117772608 117777021 + Gm26530 lincRNA lincRNA MGP_C3HHeJ_T0063565.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137502858 137613324 - MGP_C3HHeJ_P0063565 Nfkb1 protein_coding protein_coding MGP_C3HHeJ_T0063566.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137502860 137527840 - MGP_C3HHeJ_P0063566 Nfkb1 protein_coding protein_coding MGP_C3HHeJ_T0063567.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137502948 137523387 - MGP_C3HHeJ_P0063567 Nfkb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063568.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137503085 137528053 - Nfkb1 protein_coding retained_intron MGP_C3HHeJ_T0063569.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137503482 137589734 - MGP_C3HHeJ_P0063569 Nfkb1 protein_coding protein_coding MGP_C3HHeJ_T0063570.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137503485 137591274 - MGP_C3HHeJ_P0063570 Nfkb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063571.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137509994 137513663 - Nfkb1 protein_coding processed_transcript MGP_C3HHeJ_T0063572.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137521449 137523450 - Nfkb1 protein_coding retained_intron MGP_C3HHeJ_T0063573.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137530166 137613325 - Nfkb1 protein_coding retained_intron MGP_C3HHeJ_T0063574.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137538662 137542789 - Nfkb1 protein_coding retained_intron MGP_C3HHeJ_T0063046.1 MGP_C3HHeJ_G0027517.1 mouse_genomes_project 3 117935362 117975989 - MGP_C3HHeJ_P0063046 Gm43191 protein_coding protein_coding MGP_C3HHeJ_T0098423.1 MGP_C3HHeJ_G0036628.1 mouse_genomes_project 3 102077582 102079770 + Gm42939 sense_intronic sense_intronic MGP_C3HHeJ_T0001158.1 MGP_C3HHeJ_G0001092.1 mouse_genomes_project 3 49882883 49883984 + TEC TEC MGP_C3HHeJ_T0007547.1 MGP_C3HHeJ_G0006168.1 mouse_genomes_project 3 96660949 96661518 + Gm26654 lincRNA lincRNA MGP_C3HHeJ_T0061802.1 MGP_C3HHeJ_G0027227.1 mouse_genomes_project 3 92575235 92576931 - MGP_C3HHeJ_P0061802 Lce1f protein_coding protein_coding MGP_C3HHeJ_T0062522.1 MGP_C3HHeJ_G0027397.1 mouse_genomes_project 3 104517382 104529360 - Olfml3 protein_coding processed_transcript MGP_C3HHeJ_T0062523.1 MGP_C3HHeJ_G0027397.1 mouse_genomes_project 3 104526797 104533127 - MGP_C3HHeJ_P0062523 Olfml3 protein_coding protein_coding MGP_C3HHeJ_T0062524.1 MGP_C3HHeJ_G0027397.1 mouse_genomes_project 3 104526813 104527687 - MGP_C3HHeJ_P0062524 Olfml3 protein_coding protein_coding MGP_C3HHeJ_T0062525.1 MGP_C3HHeJ_G0027397.1 mouse_genomes_project 3 104528830 104533094 - Olfml3 protein_coding retained_intron MGP_C3HHeJ_T0007479.1 MGP_C3HHeJ_G0006118.1 mouse_genomes_project 3 62064361 62067129 - lincRNA lincRNA MGP_C3HHeJ_T0098124.1 MGP_C3HHeJ_G0036336.1 mouse_genomes_project 3 88420994 88421113 + n-R5s197 rRNA rRNA MGP_C3HHeJ_T0100558.1 MGP_C3HHeJ_G0038752.1 mouse_genomes_project 3 88574395 88574525 - Gm24403 snoRNA snoRNA MGP_C3HHeJ_T0059711.1 MGP_C3HHeJ_G0026781.1 mouse_genomes_project 3 7677807 7682582 - protein_coding retained_intron MGP_C3HHeJ_T0059712.1 MGP_C3HHeJ_G0026781.1 mouse_genomes_project 3 7678534 7686883 - MGP_C3HHeJ_P0059712 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059713.1 MGP_C3HHeJ_G0026781.1 mouse_genomes_project 3 7682512 7683983 - protein_coding retained_intron MGP_C3HHeJ_T0059714.1 MGP_C3HHeJ_G0026781.1 mouse_genomes_project 3 7686056 7686882 - protein_coding processed_transcript MGP_C3HHeJ_T0062652.1 MGP_C3HHeJ_G0027426.1 mouse_genomes_project 3 106815183 106837214 - MGP_C3HHeJ_P0062652 Atp5f1 protein_coding protein_coding MGP_C3HHeJ_T0062653.1 MGP_C3HHeJ_G0027426.1 mouse_genomes_project 3 106815187 106836391 - MGP_C3HHeJ_P0062653 Atp5f1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062654.1 MGP_C3HHeJ_G0027426.1 mouse_genomes_project 3 106815383 106831297 - MGP_C3HHeJ_P0062654 Atp5f1 protein_coding protein_coding MGP_C3HHeJ_T0062655.1 MGP_C3HHeJ_G0027426.1 mouse_genomes_project 3 106830785 106836379 - Atp5f1 protein_coding retained_intron MGP_C3HHeJ_T0062656.1 MGP_C3HHeJ_G0027426.1 mouse_genomes_project 3 106830942 106833122 - Atp5f1 protein_coding retained_intron MGP_C3HHeJ_T0062657.1 MGP_C3HHeJ_G0027426.1 mouse_genomes_project 3 106835705 106836361 - Atp5f1 protein_coding retained_intron MGP_C3HHeJ_T0060496.1 MGP_C3HHeJ_G0026935.1 mouse_genomes_project 3 53386985 53392615 - MGP_C3HHeJ_P0060496 Ccna1 protein_coding protein_coding MGP_C3HHeJ_T0060497.1 MGP_C3HHeJ_G0026935.1 mouse_genomes_project 3 53386991 53397003 - MGP_C3HHeJ_P0060497 Ccna1 protein_coding protein_coding MGP_C3HHeJ_T0060498.1 MGP_C3HHeJ_G0026935.1 mouse_genomes_project 3 53386993 53396990 - MGP_C3HHeJ_P0060498 Ccna1 protein_coding protein_coding MGP_C3HHeJ_T0060499.1 MGP_C3HHeJ_G0026935.1 mouse_genomes_project 3 53386994 53397449 - MGP_C3HHeJ_P0060499 Ccna1 protein_coding protein_coding MGP_C3HHeJ_T0060500.1 MGP_C3HHeJ_G0026935.1 mouse_genomes_project 3 53392562 53397430 - MGP_C3HHeJ_P0060500 Ccna1 protein_coding protein_coding MGP_C3HHeJ_T0060501.1 MGP_C3HHeJ_G0026935.1 mouse_genomes_project 3 53392956 53396985 - MGP_C3HHeJ_P0060501 Ccna1 protein_coding protein_coding MGP_C3HHeJ_T0014044.1 MGP_C3HHeJ_G0012148.1 mouse_genomes_project 3 99389857 99390112 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010412.1 MGP_C3HHeJ_G0008545.1 mouse_genomes_project 3 653919 654009 + Gm23237 miRNA miRNA MGP_C3HHeJ_T0007651.1 MGP_C3HHeJ_G0006254.1 mouse_genomes_project 3 145232200 145285982 + Gm43614 lincRNA lincRNA MGP_C3HHeJ_T0014137.1 MGP_C3HHeJ_G0012241.1 mouse_genomes_project 3 127873878 127875124 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001192.1 MGP_C3HHeJ_G0001124.1 mouse_genomes_project 3 56946892 56948087 + TEC TEC MGP_C3HHeJ_T0060807.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67848755 67879808 + MGP_C3HHeJ_P0060807 Smc4 protein_coding protein_coding MGP_C3HHeJ_T0060808.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67848987 67862494 + MGP_C3HHeJ_P0060808 Smc4 protein_coding protein_coding MGP_C3HHeJ_T0060809.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67849008 67879803 + MGP_C3HHeJ_P0060809 Smc4 protein_coding protein_coding MGP_C3HHeJ_T0060810.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67849025 67879808 + MGP_C3HHeJ_P0060810 Smc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060811.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67849032 67872765 + MGP_C3HHeJ_P0060811 Smc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060812.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67860875 67862559 + Smc4 protein_coding retained_intron MGP_C3HHeJ_T0060813.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67861081 67863673 + Smc4 protein_coding processed_transcript MGP_C3HHeJ_T0060814.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67863281 67865749 + Smc4 protein_coding retained_intron MGP_C3HHeJ_T0060815.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67866396 67868627 + Smc4 protein_coding retained_intron MGP_C3HHeJ_T0060816.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67868519 67872208 + MGP_C3HHeJ_P0060816 Smc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060817.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67875535 67878261 + Smc4 protein_coding retained_intron MGP_C3HHeJ_T0062833.1 MGP_C3HHeJ_G0027474.1 mouse_genomes_project 3 109249552 109276992 + MGP_C3HHeJ_P0062833 Psma5 protein_coding protein_coding MGP_C3HHeJ_T0062834.1 MGP_C3HHeJ_G0027474.1 mouse_genomes_project 3 109265892 109276914 + MGP_C3HHeJ_P0062834 Psma5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059861.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24568866 24628050 - MGP_C3HHeJ_P0059861 Ect2 protein_coding protein_coding MGP_C3HHeJ_T0059862.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24568866 24628033 - MGP_C3HHeJ_P0059862 Ect2 protein_coding protein_coding MGP_C3HHeJ_T0059863.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24568867 24628026 - MGP_C3HHeJ_P0059863 Ect2 protein_coding protein_coding MGP_C3HHeJ_T0059864.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24568870 24628022 - MGP_C3HHeJ_P0059864 Ect2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059865.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24569950 24588349 - MGP_C3HHeJ_P0059865 Ect2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059866.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24588393 24593230 - Ect2 protein_coding retained_intron MGP_C3HHeJ_T0059867.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24592415 24627984 - Ect2 protein_coding retained_intron MGP_C3HHeJ_T0059868.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24602164 24608587 - Ect2 protein_coding retained_intron MGP_C3HHeJ_T0059869.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24619100 24621365 - Ect2 protein_coding retained_intron MGP_C3HHeJ_T0059870.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24619170 24628026 - MGP_C3HHeJ_P0059870 Ect2 protein_coding protein_coding MGP_C3HHeJ_T0059871.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24620119 24628000 - MGP_C3HHeJ_P0059871 Ect2 protein_coding protein_coding MGP_C3HHeJ_T0059872.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24620135 24627982 - MGP_C3HHeJ_P0059872 Ect2 protein_coding protein_coding MGP_C3HHeJ_T0059873.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24620179 24627954 - MGP_C3HHeJ_P0059873 Ect2 protein_coding protein_coding MGP_C3HHeJ_T0014050.1 MGP_C3HHeJ_G0012154.1 mouse_genomes_project 3 100671937 100672105 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059755.1 MGP_C3HHeJ_G0026795.1 mouse_genomes_project 3 13023996 13061137 - protein_coding retained_intron MGP_C3HHeJ_T0062540.1 MGP_C3HHeJ_G0027401.1 mouse_genomes_project 3 104605353 104618605 + MGP_C3HHeJ_P0062540 protein_coding protein_coding MGP_C3HHeJ_T0062542.1 MGP_C3HHeJ_G0027401.1 mouse_genomes_project 3 104605426 104618410 + MGP_C3HHeJ_P0062542 protein_coding protein_coding MGP_C3HHeJ_T0062543.1 MGP_C3HHeJ_G0027401.1 mouse_genomes_project 3 104605433 104618605 + MGP_C3HHeJ_P0062543 protein_coding protein_coding MGP_C3HHeJ_T0062544.1 MGP_C3HHeJ_G0027401.1 mouse_genomes_project 3 104605461 104618607 + MGP_C3HHeJ_P0062544 protein_coding protein_coding MGP_C3HHeJ_T0062545.1 MGP_C3HHeJ_G0027401.1 mouse_genomes_project 3 104605669 104618343 + MGP_C3HHeJ_P0062545 protein_coding protein_coding MGP_C3HHeJ_T0062546.1 MGP_C3HHeJ_G0027401.1 mouse_genomes_project 3 104605697 104610721 + protein_coding processed_transcript MGP_C3HHeJ_T0062547.1 MGP_C3HHeJ_G0027401.1 mouse_genomes_project 3 104610910 104617266 + MGP_C3HHeJ_P0062547 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013993.1 MGP_C3HHeJ_G0012097.1 mouse_genomes_project 3 84527874 84528535 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060531.1 MGP_C3HHeJ_G0026940.1 mouse_genomes_project 3 53813171 53824202 - MGP_C3HHeJ_P0060531 Gm21954 protein_coding protein_coding MGP_C3HHeJ_T0063411.1 MGP_C3HHeJ_G0027580.1 mouse_genomes_project 3 131929836 131983426 + Col25a1 protein_coding processed_transcript MGP_C3HHeJ_T0063412.1 MGP_C3HHeJ_G0027580.1 mouse_genomes_project 3 131981437 132354071 + Col25a1 protein_coding retained_intron MGP_C3HHeJ_T0063413.1 MGP_C3HHeJ_G0027580.1 mouse_genomes_project 3 131981437 132407585 + MGP_C3HHeJ_P0063413 Col25a1 protein_coding protein_coding MGP_C3HHeJ_T0063414.1 MGP_C3HHeJ_G0027580.1 mouse_genomes_project 3 131981437 132404011 + MGP_C3HHeJ_P0063414 Col25a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063415.1 MGP_C3HHeJ_G0027580.1 mouse_genomes_project 3 131981437 132402822 + MGP_C3HHeJ_P0063415 Col25a1 protein_coding protein_coding MGP_C3HHeJ_T0063416.1 MGP_C3HHeJ_G0027580.1 mouse_genomes_project 3 131982032 132407595 + MGP_C3HHeJ_P0063416 Col25a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0063417.1 MGP_C3HHeJ_G0027580.1 mouse_genomes_project 3 132287945 132290665 + Col25a1 protein_coding retained_intron MGP_C3HHeJ_T0010467.1 MGP_C3HHeJ_G0008600.1 mouse_genomes_project 3 129214027 129214096 + Mir302a miRNA miRNA MGP_C3HHeJ_T0098436.1 MGP_C3HHeJ_G0036641.1 mouse_genomes_project 3 104664062 104666153 + Gm43065 sense_intronic sense_intronic MGP_C3HHeJ_T0062606.1 MGP_C3HHeJ_G0027414.1 mouse_genomes_project 3 105672334 105714787 - MGP_C3HHeJ_P0062606 Capza1 protein_coding protein_coding MGP_C3HHeJ_T0062607.1 MGP_C3HHeJ_G0027414.1 mouse_genomes_project 3 105683398 105714682 - MGP_C3HHeJ_P0062607 Capza1 protein_coding protein_coding MGP_C3HHeJ_T0062608.1 MGP_C3HHeJ_G0027414.1 mouse_genomes_project 3 105689078 105691946 - Capza1 protein_coding retained_intron MGP_C3HHeJ_T0062609.1 MGP_C3HHeJ_G0027414.1 mouse_genomes_project 3 105691271 105714655 - Capza1 protein_coding retained_intron MGP_C3HHeJ_T0061837.1 MGP_C3HHeJ_G0027251.1 mouse_genomes_project 3 94404655 94409904 + MGP_C3HHeJ_P0061837 Them5 protein_coding protein_coding MGP_C3HHeJ_T0061838.1 MGP_C3HHeJ_G0027251.1 mouse_genomes_project 3 94404815 94409902 + MGP_C3HHeJ_P0061838 Them5 protein_coding protein_coding MGP_C3HHeJ_T0062114.1 MGP_C3HHeJ_G0027298.1 mouse_genomes_project 3 95987731 96050552 - MGP_C3HHeJ_P0062114 Rprd2 protein_coding protein_coding MGP_C3HHeJ_T0062115.1 MGP_C3HHeJ_G0027298.1 mouse_genomes_project 3 95987734 96050559 - MGP_C3HHeJ_P0062115 Rprd2 protein_coding protein_coding MGP_C3HHeJ_T0062116.1 MGP_C3HHeJ_G0027298.1 mouse_genomes_project 3 95997936 96004105 - Rprd2 protein_coding retained_intron MGP_C3HHeJ_T0062117.1 MGP_C3HHeJ_G0027298.1 mouse_genomes_project 3 95999634 96050579 - MGP_C3HHeJ_P0062117 Rprd2 protein_coding protein_coding MGP_C3HHeJ_T0062118.1 MGP_C3HHeJ_G0027298.1 mouse_genomes_project 3 96000449 96004083 - Rprd2 protein_coding processed_transcript MGP_C3HHeJ_T0062119.1 MGP_C3HHeJ_G0027298.1 mouse_genomes_project 3 96011558 96050664 - Rprd2 protein_coding retained_intron MGP_C3HHeJ_T0004139.1 MGP_C3HHeJ_G0003643.1 mouse_genomes_project 3 28377427 28378398 - 4933429H19Rik antisense antisense MGP_C3HHeJ_T0004140.1 MGP_C3HHeJ_G0003643.1 mouse_genomes_project 3 28377971 28378394 - 4933429H19Rik antisense antisense MGP_C3HHeJ_T0013956.1 MGP_C3HHeJ_G0012060.1 mouse_genomes_project 3 69331053 69331612 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001148.1 MGP_C3HHeJ_G0001082.1 mouse_genomes_project 3 49087981 49090630 - TEC TEC MGP_C3HHeJ_T0017747.1 MGP_C3HHeJ_G0015273.1 mouse_genomes_project 3 95162291 95163743 + 4930481B07Rik processed_transcript lincRNA MGP_C3HHeJ_T0017748.1 MGP_C3HHeJ_G0015273.1 mouse_genomes_project 3 95162915 95166819 + 4930481B07Rik processed_transcript processed_transcript MGP_C3HHeJ_T0064072.1 MGP_C3HHeJ_G0027702.1 mouse_genomes_project 3 156638632 156950111 + MGP_C3HHeJ_P0064072 Slc44a5 protein_coding protein_coding MGP_C3HHeJ_T0064073.1 MGP_C3HHeJ_G0027702.1 mouse_genomes_project 3 156805098 156946169 + MGP_C3HHeJ_P0064073 Slc44a5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0064074.1 MGP_C3HHeJ_G0027702.1 mouse_genomes_project 3 156900619 156903715 + Slc44a5 protein_coding processed_transcript MGP_C3HHeJ_T0064075.1 MGP_C3HHeJ_G0027702.1 mouse_genomes_project 3 156935279 156950111 + Slc44a5 protein_coding retained_intron MGP_C3HHeJ_T0060707.1 MGP_C3HHeJ_G0026986.1 mouse_genomes_project 3 63504888 63653767 - MGP_C3HHeJ_P0060707 protein_coding protein_coding MGP_C3HHeJ_T0059766.1 MGP_C3HHeJ_G0026802.1 mouse_genomes_project 3 15837512 15839113 + MGP_C3HHeJ_P0059766 protein_coding protein_coding MGP_C3HHeJ_T0064112.1 MGP_C3HHeJ_G0027710.1 mouse_genomes_project 3 159314311 160098457 + MGP_C3HHeJ_P0064112 Negr1 protein_coding protein_coding MGP_C3HHeJ_T0064113.1 MGP_C3HHeJ_G0027710.1 mouse_genomes_project 3 159314476 159945498 + MGP_C3HHeJ_P0064113 Negr1 protein_coding protein_coding MGP_C3HHeJ_T0064114.1 MGP_C3HHeJ_G0027710.1 mouse_genomes_project 3 159314486 159972849 + MGP_C3HHeJ_P0064114 Negr1 protein_coding protein_coding MGP_C3HHeJ_T0064115.1 MGP_C3HHeJ_G0027710.1 mouse_genomes_project 3 159314663 159318691 + Negr1 protein_coding retained_intron MGP_C3HHeJ_T0064116.1 MGP_C3HHeJ_G0027710.1 mouse_genomes_project 3 159314667 159768256 + MGP_C3HHeJ_P0064116 Negr1 protein_coding protein_coding MGP_C3HHeJ_T0060603.1 MGP_C3HHeJ_G0026959.1 mouse_genomes_project 3 57565599 57582397 - MGP_C3HHeJ_P0060603 P2ry14 protein_coding protein_coding MGP_C3HHeJ_T0060604.1 MGP_C3HHeJ_G0026959.1 mouse_genomes_project 3 57566369 57605687 - MGP_C3HHeJ_P0060604 P2ry14 protein_coding protein_coding MGP_C3HHeJ_T0060605.1 MGP_C3HHeJ_G0026959.1 mouse_genomes_project 3 57566369 57582259 - MGP_C3HHeJ_P0060605 P2ry14 protein_coding protein_coding MGP_C3HHeJ_T0060606.1 MGP_C3HHeJ_G0026959.1 mouse_genomes_project 3 57566370 57582257 - MGP_C3HHeJ_P0060606 P2ry14 protein_coding protein_coding MGP_C3HHeJ_T0060607.1 MGP_C3HHeJ_G0026959.1 mouse_genomes_project 3 57566676 57582962 - MGP_C3HHeJ_P0060607 P2ry14 protein_coding protein_coding MGP_C3HHeJ_T0060608.1 MGP_C3HHeJ_G0026959.1 mouse_genomes_project 3 57567451 57582848 - MGP_C3HHeJ_P0060608 P2ry14 protein_coding protein_coding MGP_C3HHeJ_T0060609.1 MGP_C3HHeJ_G0026959.1 mouse_genomes_project 3 57567755 57582753 - MGP_C3HHeJ_P0060609 P2ry14 protein_coding protein_coding MGP_C3HHeJ_T0060610.1 MGP_C3HHeJ_G0026959.1 mouse_genomes_project 3 57567770 57584087 - MGP_C3HHeJ_P0060610 P2ry14 protein_coding protein_coding MGP_C3HHeJ_T0060611.1 MGP_C3HHeJ_G0026959.1 mouse_genomes_project 3 57598024 57605813 - P2ry14 protein_coding retained_intron MGP_C3HHeJ_T0013995.1 MGP_C3HHeJ_G0012099.1 mouse_genomes_project 3 85564223 85564656 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060109.1 MGP_C3HHeJ_G0026865.1 mouse_genomes_project 3 32394738 32396789 + MGP_C3HHeJ_P0060109 Sox2 protein_coding protein_coding MGP_C3HHeJ_T0010416.1 MGP_C3HHeJ_G0008549.1 mouse_genomes_project 3 24495188 24495323 - Gm44464 miRNA miRNA MGP_C3HHeJ_T0099273.1 MGP_C3HHeJ_G0037467.1 mouse_genomes_project 3 86357709 86357869 + Gm23376 snRNA snRNA MGP_C3HHeJ_T0098122.1 MGP_C3HHeJ_G0036334.1 mouse_genomes_project 3 50048665 50048782 + n-R5s196 rRNA rRNA MGP_C3HHeJ_T0063858.1 MGP_C3HHeJ_G0027672.1 mouse_genomes_project 3 148808430 148811571 + Ctbs protein_coding retained_intron MGP_C3HHeJ_T0063859.1 MGP_C3HHeJ_G0027672.1 mouse_genomes_project 3 148809105 148824781 + MGP_C3HHeJ_P0063859 Ctbs protein_coding protein_coding MGP_C3HHeJ_T0063860.1 MGP_C3HHeJ_G0027672.1 mouse_genomes_project 3 148809113 148815973 + MGP_C3HHeJ_P0063860 Ctbs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063861.1 MGP_C3HHeJ_G0027672.1 mouse_genomes_project 3 148809128 148824703 + MGP_C3HHeJ_P0063861 Ctbs protein_coding protein_coding MGP_C3HHeJ_T0062900.1 MGP_C3HHeJ_G0027488.1 mouse_genomes_project 3 109824370 109873918 - MGP_C3HHeJ_P0062900 Stxbp3 protein_coding protein_coding MGP_C3HHeJ_T0062901.1 MGP_C3HHeJ_G0027488.1 mouse_genomes_project 3 109825622 109834974 - Stxbp3 protein_coding retained_intron MGP_C3HHeJ_T0062902.1 MGP_C3HHeJ_G0027488.1 mouse_genomes_project 3 109826066 109830224 - Stxbp3 protein_coding retained_intron MGP_C3HHeJ_T0062903.1 MGP_C3HHeJ_G0027488.1 mouse_genomes_project 3 109832551 109838171 - Stxbp3 protein_coding retained_intron MGP_C3HHeJ_T0062904.1 MGP_C3HHeJ_G0027488.1 mouse_genomes_project 3 109842395 109873858 - MGP_C3HHeJ_P0062904 Stxbp3 protein_coding protein_coding MGP_C3HHeJ_T0062905.1 MGP_C3HHeJ_G0027488.1 mouse_genomes_project 3 109854183 109873922 - Stxbp3 protein_coding processed_transcript MGP_C3HHeJ_T0062906.1 MGP_C3HHeJ_G0027488.1 mouse_genomes_project 3 109856913 109873933 - MGP_C3HHeJ_P0062906 Stxbp3 protein_coding protein_coding MGP_C3HHeJ_T0062907.1 MGP_C3HHeJ_G0027488.1 mouse_genomes_project 3 109857998 109873917 - MGP_C3HHeJ_P0062907 Stxbp3 protein_coding protein_coding MGP_C3HHeJ_T0063014.1 MGP_C3HHeJ_G0027511.1 mouse_genomes_project 3 117772605 117791915 - MGP_C3HHeJ_P0063014 Rtca protein_coding protein_coding MGP_C3HHeJ_T0063015.1 MGP_C3HHeJ_G0027511.1 mouse_genomes_project 3 117772882 117779672 - Rtca protein_coding retained_intron MGP_C3HHeJ_T0063016.1 MGP_C3HHeJ_G0027511.1 mouse_genomes_project 3 117777857 117791731 - MGP_C3HHeJ_P0063016 Rtca protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063017.1 MGP_C3HHeJ_G0027511.1 mouse_genomes_project 3 117779397 117791772 - MGP_C3HHeJ_P0063017 Rtca protein_coding protein_coding MGP_C3HHeJ_T0063018.1 MGP_C3HHeJ_G0027511.1 mouse_genomes_project 3 117783252 117791840 - MGP_C3HHeJ_P0063018 Rtca protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013853.1 MGP_C3HHeJ_G0011957.1 mouse_genomes_project 3 37113633 37114861 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014109.1 MGP_C3HHeJ_G0012213.1 mouse_genomes_project 3 118155196 118155581 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061679.1 MGP_C3HHeJ_G0027175.1 mouse_genomes_project 3 89864055 89879551 + MGP_C3HHeJ_P0061679 Dennd4b protein_coding protein_coding MGP_C3HHeJ_T0061680.1 MGP_C3HHeJ_G0027175.1 mouse_genomes_project 3 89865384 89879551 + MGP_C3HHeJ_P0061680 Dennd4b protein_coding protein_coding MGP_C3HHeJ_T0061681.1 MGP_C3HHeJ_G0027175.1 mouse_genomes_project 3 89866331 89874526 + MGP_C3HHeJ_P0061681 Dennd4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061682.1 MGP_C3HHeJ_G0027175.1 mouse_genomes_project 3 89867886 89870568 + MGP_C3HHeJ_P0061682 Dennd4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061683.1 MGP_C3HHeJ_G0027175.1 mouse_genomes_project 3 89874343 89876360 + MGP_C3HHeJ_P0061683 Dennd4b protein_coding protein_coding MGP_C3HHeJ_T0061684.1 MGP_C3HHeJ_G0027175.1 mouse_genomes_project 3 89876284 89877225 + Dennd4b protein_coding retained_intron MGP_C3HHeJ_T0061685.1 MGP_C3HHeJ_G0027175.1 mouse_genomes_project 3 89876889 89877552 + Dennd4b protein_coding retained_intron MGP_C3HHeJ_T0014051.1 MGP_C3HHeJ_G0012155.1 mouse_genomes_project 3 101024914 101025940 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017739.1 MGP_C3HHeJ_G0015269.1 mouse_genomes_project 3 81914565 81917448 - Gm29999 processed_transcript retained_intron MGP_C3HHeJ_T0017740.1 MGP_C3HHeJ_G0015269.1 mouse_genomes_project 3 81914711 81919033 - Gm29999 processed_transcript lincRNA MGP_C3HHeJ_T0061252.1 MGP_C3HHeJ_G0027110.1 mouse_genomes_project 3 87933466 87950161 - MGP_C3HHeJ_P0061252 Pmf1 protein_coding protein_coding MGP_C3HHeJ_T0061253.1 MGP_C3HHeJ_G0027110.1 mouse_genomes_project 3 87933466 87950156 - MGP_C3HHeJ_P0061253 Pmf1 protein_coding protein_coding MGP_C3HHeJ_T0061254.1 MGP_C3HHeJ_G0027110.1 mouse_genomes_project 3 87933702 87950095 - Pmf1 protein_coding processed_transcript MGP_C3HHeJ_T0061255.1 MGP_C3HHeJ_G0027110.1 mouse_genomes_project 3 87935066 87936044 - Pmf1 protein_coding retained_intron MGP_C3HHeJ_T0061256.1 MGP_C3HHeJ_G0027110.1 mouse_genomes_project 3 87935391 87950116 - MGP_C3HHeJ_P0061256 Pmf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061257.1 MGP_C3HHeJ_G0027110.1 mouse_genomes_project 3 87936688 87939033 - Pmf1 protein_coding retained_intron MGP_C3HHeJ_T0061258.1 MGP_C3HHeJ_G0027110.1 mouse_genomes_project 3 87938855 87950138 - Pmf1 protein_coding retained_intron MGP_C3HHeJ_T0007393.1 MGP_C3HHeJ_G0006051.1 mouse_genomes_project 3 17841535 17844642 - Gm31466 lincRNA lincRNA MGP_C3HHeJ_T0098583.1 MGP_C3HHeJ_G0036778.1 mouse_genomes_project 3 147712444 147713479 + D530037P16Rik sense_overlapping sense_overlapping MGP_C3HHeJ_T0061890.1 MGP_C3HHeJ_G0027263.1 mouse_genomes_project 3 94846999 94891613 - MGP_C3HHeJ_P0061890 Cgn protein_coding protein_coding MGP_C3HHeJ_T0061891.1 MGP_C3HHeJ_G0027263.1 mouse_genomes_project 3 94846999 94891584 - MGP_C3HHeJ_P0061891 Cgn protein_coding protein_coding MGP_C3HHeJ_T0061892.1 MGP_C3HHeJ_G0027263.1 mouse_genomes_project 3 94876379 94891588 - MGP_C3HHeJ_P0061892 Cgn protein_coding protein_coding MGP_C3HHeJ_T0061893.1 MGP_C3HHeJ_G0027263.1 mouse_genomes_project 3 94876379 94891572 - MGP_C3HHeJ_P0061893 Cgn protein_coding protein_coding MGP_C3HHeJ_T0061811.1 MGP_C3HHeJ_G0027236.1 mouse_genomes_project 3 92801976 92803095 + MGP_C3HHeJ_P0061811 Lce3b protein_coding protein_coding MGP_C3HHeJ_T0001110.1 MGP_C3HHeJ_G0001044.1 mouse_genomes_project 3 32387545 32390430 + TEC TEC MGP_C3HHeJ_T0014008.1 MGP_C3HHeJ_G0012112.1 mouse_genomes_project 3 90335661 90336395 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014178.1 MGP_C3HHeJ_G0012282.1 mouse_genomes_project 3 140512887 140513256 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098434.1 MGP_C3HHeJ_G0036639.1 mouse_genomes_project 3 104576532 104577598 - Gm43387 sense_intronic sense_intronic MGP_C3HHeJ_T0007611.1 MGP_C3HHeJ_G0006219.1 mouse_genomes_project 3 129660454 129662585 + Gm43053 lincRNA lincRNA MGP_C3HHeJ_T0004141.1 MGP_C3HHeJ_G0003644.1 mouse_genomes_project 3 28895605 28928005 + Gm15496 antisense antisense MGP_C3HHeJ_T0004142.1 MGP_C3HHeJ_G0003644.1 mouse_genomes_project 3 28922138 28926120 + Gm15496 antisense antisense MGP_C3HHeJ_T0060919.1 MGP_C3HHeJ_G0027034.1 mouse_genomes_project 3 79018681 79051330 - MGP_C3HHeJ_P0060919 Tmem144 protein_coding protein_coding MGP_C3HHeJ_T0060920.1 MGP_C3HHeJ_G0027034.1 mouse_genomes_project 3 79019250 79049019 - MGP_C3HHeJ_P0060920 Tmem144 protein_coding protein_coding MGP_C3HHeJ_T0060921.1 MGP_C3HHeJ_G0027034.1 mouse_genomes_project 3 79020183 79051535 - MGP_C3HHeJ_P0060921 Tmem144 protein_coding unknown_likely_coding MGP_C3HHeJ_T0060922.1 MGP_C3HHeJ_G0027034.1 mouse_genomes_project 3 79038382 79062243 - MGP_C3HHeJ_P0060922 Tmem144 protein_coding protein_coding MGP_C3HHeJ_T0060923.1 MGP_C3HHeJ_G0027034.1 mouse_genomes_project 3 79045445 79062238 - MGP_C3HHeJ_P0060923 Tmem144 protein_coding protein_coding MGP_C3HHeJ_T0060924.1 MGP_C3HHeJ_G0027034.1 mouse_genomes_project 3 79045574 79051563 - Tmem144 protein_coding processed_transcript MGP_C3HHeJ_T0013942.1 MGP_C3HHeJ_G0012046.1 mouse_genomes_project 3 66587193 66588523 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001330.1 MGP_C3HHeJ_G0001261.1 mouse_genomes_project 3 138650553 138652076 + TEC TEC MGP_C3HHeJ_T0014059.1 MGP_C3HHeJ_G0012163.1 mouse_genomes_project 3 102775327 102777012 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001073.1 MGP_C3HHeJ_G0001008.1 mouse_genomes_project 3 277047 277174 + TEC TEC MGP_C3HHeJ_T0061757.1 MGP_C3HHeJ_G0027192.1 mouse_genomes_project 3 90237211 90238744 + MGP_C3HHeJ_P0061757 S100a6 protein_coding protein_coding MGP_C3HHeJ_T0061758.1 MGP_C3HHeJ_G0027192.1 mouse_genomes_project 3 90237483 90238337 + S100a6 protein_coding retained_intron MGP_C3HHeJ_T0061759.1 MGP_C3HHeJ_G0027192.1 mouse_genomes_project 3 90237634 90238744 + MGP_C3HHeJ_P0061759 S100a6 protein_coding protein_coding MGP_C3HHeJ_T0061760.1 MGP_C3HHeJ_G0027192.1 mouse_genomes_project 3 90238089 90248505 + MGP_C3HHeJ_P0061760 S100a6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0101203.1 MGP_C3HHeJ_G0039340.1 mouse_genomes_project 3 130550741 130551427 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0063469.1 MGP_C3HHeJ_G0027593.1 mouse_genomes_project 3 134487136 134643053 + MGP_C3HHeJ_P0063469 Tbck protein_coding protein_coding MGP_C3HHeJ_T0063470.1 MGP_C3HHeJ_G0027593.1 mouse_genomes_project 3 134487160 134502712 + Tbck protein_coding retained_intron MGP_C3HHeJ_T0063471.1 MGP_C3HHeJ_G0027593.1 mouse_genomes_project 3 134487192 134602656 + Tbck protein_coding processed_transcript MGP_C3HHeJ_T0063472.1 MGP_C3HHeJ_G0027593.1 mouse_genomes_project 3 134592731 134639882 + Tbck protein_coding processed_transcript MGP_C3HHeJ_T0099296.1 MGP_C3HHeJ_G0037490.1 mouse_genomes_project 3 105438437 105438519 - Gm26091 snRNA snRNA MGP_C3HHeJ_T0101941.1 MGP_C3HHeJ_G0039906.1 mouse_genomes_project 3 20413412 20415915 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101416.1 MGP_C3HHeJ_G0039449.1 mouse_genomes_project 3 129144060 129145802 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0060502.1 MGP_C3HHeJ_G0026936.1 mouse_genomes_project 3 53457171 53482383 + MGP_C3HHeJ_P0060502 Spg20 protein_coding protein_coding MGP_C3HHeJ_T0060503.1 MGP_C3HHeJ_G0026936.1 mouse_genomes_project 3 53457176 53474387 + Spg20 protein_coding retained_intron MGP_C3HHeJ_T0060504.1 MGP_C3HHeJ_G0026936.1 mouse_genomes_project 3 53457192 53482372 + MGP_C3HHeJ_P0060504 Spg20 protein_coding protein_coding MGP_C3HHeJ_T0060505.1 MGP_C3HHeJ_G0026936.1 mouse_genomes_project 3 53457201 53459316 + Spg20 protein_coding retained_intron MGP_C3HHeJ_T0060506.1 MGP_C3HHeJ_G0026936.1 mouse_genomes_project 3 53457229 53482378 + MGP_C3HHeJ_P0060506 Spg20 protein_coding protein_coding MGP_C3HHeJ_T0060507.1 MGP_C3HHeJ_G0026936.1 mouse_genomes_project 3 53457450 53474755 + MGP_C3HHeJ_P0060507 Spg20 protein_coding protein_coding MGP_C3HHeJ_T0060508.1 MGP_C3HHeJ_G0026936.1 mouse_genomes_project 3 53457659 53462324 + MGP_C3HHeJ_P0060508 Spg20 protein_coding protein_coding MGP_C3HHeJ_T0060509.1 MGP_C3HHeJ_G0026936.1 mouse_genomes_project 3 53461238 53462396 + MGP_C3HHeJ_P0060509 Spg20 protein_coding protein_coding MGP_C3HHeJ_T0100579.1 MGP_C3HHeJ_G0038773.1 mouse_genomes_project 3 126060076 126060206 + Gm22900 snoRNA snoRNA MGP_C3HHeJ_T0061558.1 MGP_C3HHeJ_G0027158.1 mouse_genomes_project 3 89077450 89228358 + MGP_C3HHeJ_P0061558 Kcnn3 protein_coding protein_coding MGP_C3HHeJ_T0061559.1 MGP_C3HHeJ_G0027158.1 mouse_genomes_project 3 89223119 89235599 + Kcnn3 protein_coding retained_intron MGP_C3HHeJ_T0099279.1 MGP_C3HHeJ_G0037473.1 mouse_genomes_project 3 89793373 89793478 + Gm24185 snRNA snRNA MGP_C3HHeJ_T0013806.1 MGP_C3HHeJ_G0011910.1 mouse_genomes_project 3 18980201 18980973 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063938.1 MGP_C3HHeJ_G0027686.1 mouse_genomes_project 3 154375256 154418427 - MGP_C3HHeJ_P0063938 Ptgfr protein_coding protein_coding MGP_C3HHeJ_T0063939.1 MGP_C3HHeJ_G0027686.1 mouse_genomes_project 3 154380075 154416818 - MGP_C3HHeJ_P0063939 Ptgfr protein_coding protein_coding MGP_C3HHeJ_T0063940.1 MGP_C3HHeJ_G0027686.1 mouse_genomes_project 3 154380447 154414950 - Ptgfr protein_coding processed_transcript MGP_C3HHeJ_T0098290.1 MGP_C3HHeJ_G0036502.1 mouse_genomes_project 3 109572008 109572422 - Scarna2 scaRNA scaRNA MGP_C3HHeJ_T0007417.1 MGP_C3HHeJ_G0006073.1 mouse_genomes_project 3 32528511 32540513 + Gm38509 lincRNA lincRNA MGP_C3HHeJ_T0063851.1 MGP_C3HHeJ_G0027671.1 mouse_genomes_project 3 148756575 148796345 + MGP_C3HHeJ_P0063851 Ssx2ip protein_coding protein_coding MGP_C3HHeJ_T0063852.1 MGP_C3HHeJ_G0027671.1 mouse_genomes_project 3 148756575 148795983 + MGP_C3HHeJ_P0063852 Ssx2ip protein_coding protein_coding MGP_C3HHeJ_T0063853.1 MGP_C3HHeJ_G0027671.1 mouse_genomes_project 3 148756597 148796334 + MGP_C3HHeJ_P0063853 Ssx2ip protein_coding protein_coding MGP_C3HHeJ_T0063854.1 MGP_C3HHeJ_G0027671.1 mouse_genomes_project 3 148756619 148795107 + MGP_C3HHeJ_P0063854 Ssx2ip protein_coding protein_coding MGP_C3HHeJ_T0063855.1 MGP_C3HHeJ_G0027671.1 mouse_genomes_project 3 148756624 148770938 + MGP_C3HHeJ_P0063855 Ssx2ip protein_coding protein_coding MGP_C3HHeJ_T0063856.1 MGP_C3HHeJ_G0027671.1 mouse_genomes_project 3 148756911 148771898 + MGP_C3HHeJ_P0063856 Ssx2ip protein_coding protein_coding MGP_C3HHeJ_T0063857.1 MGP_C3HHeJ_G0027671.1 mouse_genomes_project 3 148785958 148788777 + Ssx2ip protein_coding retained_intron MGP_C3HHeJ_T0063241.1 MGP_C3HHeJ_G0027553.1 mouse_genomes_project 3 125877798 125881687 + MGP_C3HHeJ_P0063241 Tram1l1 protein_coding protein_coding MGP_C3HHeJ_T0014164.1 MGP_C3HHeJ_G0012268.1 mouse_genomes_project 3 137014343 137014932 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013758.1 MGP_C3HHeJ_G0011862.1 mouse_genomes_project 3 6316902 6317224 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011442.1 MGP_C3HHeJ_G0009575.1 mouse_genomes_project 3 41884181 41884490 + Gm25714 misc_RNA misc_RNA MGP_C3HHeJ_T0059811.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17314106 17355517 - MGP_C3HHeJ_P0059811 Hps3 protein_coding protein_coding MGP_C3HHeJ_T0059812.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17314112 17355482 - Hps3 protein_coding retained_intron MGP_C3HHeJ_T0059813.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17314333 17333255 - Hps3 protein_coding processed_transcript MGP_C3HHeJ_T0059814.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17314336 17355504 - MGP_C3HHeJ_P0059814 Hps3 protein_coding protein_coding MGP_C3HHeJ_T0059815.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17320508 17332061 - Hps3 protein_coding processed_transcript MGP_C3HHeJ_T0059816.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17330358 17355504 - Hps3 protein_coding retained_intron MGP_C3HHeJ_T0059817.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17331653 17355496 - Hps3 protein_coding retained_intron MGP_C3HHeJ_T0059818.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17334080 17355504 - Hps3 protein_coding retained_intron MGP_C3HHeJ_T0059819.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17334345 17355498 - Hps3 protein_coding processed_transcript MGP_C3HHeJ_T0059820.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17335488 17355496 - Hps3 protein_coding retained_intron MGP_C3HHeJ_T0059821.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17355029 17355504 - Hps3 protein_coding processed_transcript MGP_C3HHeJ_T0004326.1 MGP_C3HHeJ_G0003769.1 mouse_genomes_project 3 151417881 151432790 + Gm43573 antisense antisense MGP_C3HHeJ_T0013909.1 MGP_C3HHeJ_G0012013.1 mouse_genomes_project 3 56723138 56723510 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007663.1 MGP_C3HHeJ_G0006264.1 mouse_genomes_project 3 145897678 145983748 + Gm42705 lincRNA lincRNA MGP_C3HHeJ_T0007574.1 MGP_C3HHeJ_G0006191.1 mouse_genomes_project 3 108033445 108041795 + A930002I21Rik lincRNA lincRNA MGP_C3HHeJ_T0007575.1 MGP_C3HHeJ_G0006191.1 mouse_genomes_project 3 108033447 108040614 + A930002I21Rik lincRNA lincRNA MGP_C3HHeJ_T0004274.1 MGP_C3HHeJ_G0003730.1 mouse_genomes_project 3 109280908 109281855 - Gm12523 antisense antisense MGP_C3HHeJ_T0063023.1 MGP_C3HHeJ_G0027513.1 mouse_genomes_project 3 117848287 117862663 + Lrrc39 protein_coding retained_intron MGP_C3HHeJ_T0063024.1 MGP_C3HHeJ_G0027513.1 mouse_genomes_project 3 117848292 117876867 + MGP_C3HHeJ_P0063024 Lrrc39 protein_coding protein_coding MGP_C3HHeJ_T0001297.1 MGP_C3HHeJ_G0001229.1 mouse_genomes_project 3 128826507 128830202 - TEC TEC MGP_C3HHeJ_T0061571.1 MGP_C3HHeJ_G0027161.1 mouse_genomes_project 3 89336035 89346332 + MGP_C3HHeJ_P0061571 Ube2q1 protein_coding protein_coding MGP_C3HHeJ_T0061572.1 MGP_C3HHeJ_G0027161.1 mouse_genomes_project 3 89336183 89339743 + Ube2q1 protein_coding retained_intron MGP_C3HHeJ_T0061033.1 MGP_C3HHeJ_G0027061.1 mouse_genomes_project 3 83844512 85299343 - MGP_C3HHeJ_P0061033 protein_coding protein_coding MGP_C3HHeJ_T0061056.1 MGP_C3HHeJ_G0027061.1 mouse_genomes_project 3 85208970 85299345 - protein_coding processed_transcript MGP_C3HHeJ_T0061057.1 MGP_C3HHeJ_G0027061.1 mouse_genomes_project 3 85225030 85299195 - protein_coding retained_intron MGP_C3HHeJ_T0001236.1 MGP_C3HHeJ_G0001168.1 mouse_genomes_project 3 97090116 97090640 + TEC TEC MGP_C3HHeJ_T0100575.1 MGP_C3HHeJ_G0038769.1 mouse_genomes_project 3 117748802 117748899 + Gm26358 snoRNA snoRNA MGP_C3HHeJ_T0007623.1 MGP_C3HHeJ_G0006229.1 mouse_genomes_project 3 133531550 133806292 + lincRNA lincRNA MGP_C3HHeJ_T0063603.1 MGP_C3HHeJ_G0027616.1 mouse_genomes_project 3 139844746 139858208 + MGP_C3HHeJ_P0063603 H2afz protein_coding protein_coding MGP_C3HHeJ_T0063604.1 MGP_C3HHeJ_G0027616.1 mouse_genomes_project 3 139844764 139857536 + H2afz protein_coding processed_transcript MGP_C3HHeJ_T0063605.1 MGP_C3HHeJ_G0027616.1 mouse_genomes_project 3 139844867 139857901 + MGP_C3HHeJ_P0063605 H2afz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063606.1 MGP_C3HHeJ_G0027616.1 mouse_genomes_project 3 139844867 139857901 + MGP_C3HHeJ_P0063606 H2afz protein_coding protein_coding MGP_C3HHeJ_T0063607.1 MGP_C3HHeJ_G0027616.1 mouse_genomes_project 3 139856420 139857927 + H2afz protein_coding retained_intron MGP_C3HHeJ_T0063608.1 MGP_C3HHeJ_G0027616.1 mouse_genomes_project 3 139856566 139857840 + H2afz protein_coding retained_intron MGP_C3HHeJ_T0004146.1 MGP_C3HHeJ_G0003648.1 mouse_genomes_project 3 30730493 30793494 + 4930419G24Rik antisense antisense MGP_C3HHeJ_T0001235.1 MGP_C3HHeJ_G0001167.1 mouse_genomes_project 3 97030205 97031000 - TEC TEC MGP_C3HHeJ_T0061774.1 MGP_C3HHeJ_G0027202.1 mouse_genomes_project 3 91975364 91983112 - MGP_C3HHeJ_P0061774 Lelp1 protein_coding protein_coding MGP_C3HHeJ_T0001319.1 MGP_C3HHeJ_G0001250.1 mouse_genomes_project 3 133382178 133385569 - TEC TEC MGP_C3HHeJ_T0001228.1 MGP_C3HHeJ_G0001160.1 mouse_genomes_project 3 93192359 93194907 + TEC TEC MGP_C3HHeJ_T0101960.1 MGP_C3HHeJ_G0039925.1 mouse_genomes_project 3 90082008 90084070 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0061213.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87834388 87859050 + MGP_C3HHeJ_P0061213 Cct3 protein_coding protein_coding MGP_C3HHeJ_T0061214.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87834389 87836220 + Cct3 protein_coding retained_intron MGP_C3HHeJ_T0061215.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87834395 87858790 + Cct3 protein_coding retained_intron MGP_C3HHeJ_T0061216.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87834398 87851689 + Cct3 protein_coding retained_intron MGP_C3HHeJ_T0061217.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87834425 87858790 + Cct3 protein_coding retained_intron MGP_C3HHeJ_T0061218.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87834446 87859049 + MGP_C3HHeJ_P0061218 Cct3 protein_coding protein_coding MGP_C3HHeJ_T0061219.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87834460 87858790 + MGP_C3HHeJ_P0061219 Cct3 protein_coding protein_coding MGP_C3HHeJ_T0061220.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87840110 87857933 + MGP_C3HHeJ_P0061220 Cct3 protein_coding protein_coding MGP_C3HHeJ_T0061221.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87858277 87859047 + Cct3 protein_coding retained_intron MGP_C3HHeJ_T0061222.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87858330 87859048 + MGP_C3HHeJ_P0061222 Cct3 protein_coding protein_coding MGP_C3HHeJ_T0013977.1 MGP_C3HHeJ_G0012081.1 mouse_genomes_project 3 77271619 77273183 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014214.1 MGP_C3HHeJ_G0012318.1 mouse_genomes_project 3 156399513 156399806 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014171.1 MGP_C3HHeJ_G0012275.1 mouse_genomes_project 3 137980643 137982777 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004185.1 MGP_C3HHeJ_G0003677.1 mouse_genomes_project 3 64649020 64693058 - Gm37359 antisense antisense MGP_C3HHeJ_T0001341.1 MGP_C3HHeJ_G0001272.1 mouse_genomes_project 3 153652525 153658501 - TEC TEC MGP_C3HHeJ_T0007668.1 MGP_C3HHeJ_G0006268.1 mouse_genomes_project 3 146267260 146303395 - Gm42709 lincRNA lincRNA MGP_C3HHeJ_T0014140.1 MGP_C3HHeJ_G0012244.1 mouse_genomes_project 3 129372348 129372890 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001268.1 MGP_C3HHeJ_G0001200.1 mouse_genomes_project 3 122939616 122940904 + TEC TEC MGP_C3HHeJ_T0062184.1 MGP_C3HHeJ_G0027310.1 mouse_genomes_project 3 96424253 96431549 + MGP_C3HHeJ_P0062184 Sf3b4 protein_coding protein_coding MGP_C3HHeJ_T0062185.1 MGP_C3HHeJ_G0027310.1 mouse_genomes_project 3 96424468 96425268 + Sf3b4 protein_coding retained_intron MGP_C3HHeJ_T0007603.1 MGP_C3HHeJ_G0006213.1 mouse_genomes_project 3 124188436 124196333 - Gm43568 lincRNA lincRNA MGP_C3HHeJ_T0007604.1 MGP_C3HHeJ_G0006213.1 mouse_genomes_project 3 124193382 124195828 - Gm43568 lincRNA lincRNA MGP_C3HHeJ_T0007605.1 MGP_C3HHeJ_G0006213.1 mouse_genomes_project 3 124194798 124196050 - Gm43568 lincRNA lincRNA MGP_C3HHeJ_T0061067.1 MGP_C3HHeJ_G0027070.1 mouse_genomes_project 3 85557334 85562005 - MGP_C3HHeJ_P0061067 Rps3a1 protein_coding protein_coding MGP_C3HHeJ_T0007609.1 MGP_C3HHeJ_G0006217.1 mouse_genomes_project 3 129540850 129544523 + Gm42586 lincRNA lincRNA MGP_C3HHeJ_T0001281.1 MGP_C3HHeJ_G0001213.1 mouse_genomes_project 3 125955837 125956772 - TEC TEC MGP_C3HHeJ_T0007473.1 MGP_C3HHeJ_G0006114.1 mouse_genomes_project 3 56544557 56566620 - 1700007F19Rik lincRNA lincRNA MGP_C3HHeJ_T0010415.1 MGP_C3HHeJ_G0008548.1 mouse_genomes_project 3 24082338 24082465 - Gm25773 miRNA miRNA MGP_C3HHeJ_T0017763.1 MGP_C3HHeJ_G0015280.1 mouse_genomes_project 3 109383143 109388383 - Gm12522 processed_transcript processed_transcript MGP_C3HHeJ_T0014015.1 MGP_C3HHeJ_G0012119.1 mouse_genomes_project 3 92331874 92332178 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007694.1 MGP_C3HHeJ_G0006286.1 mouse_genomes_project 3 154476502 154484290 + Gm43617 lincRNA lincRNA MGP_C3HHeJ_T0001083.1 MGP_C3HHeJ_G0001017.1 mouse_genomes_project 3 15587461 15592291 + TEC TEC MGP_C3HHeJ_T0061223.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87862305 87868596 + MGP_C3HHeJ_P0061223 Glmp protein_coding protein_coding MGP_C3HHeJ_T0061224.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87862337 87866794 + Glmp protein_coding retained_intron MGP_C3HHeJ_T0061225.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87862340 87863861 + Glmp protein_coding retained_intron MGP_C3HHeJ_T0061226.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87862342 87864870 + Glmp protein_coding retained_intron MGP_C3HHeJ_T0061227.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87862354 87863750 + MGP_C3HHeJ_P0061227 Glmp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061228.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87862364 87865646 + MGP_C3HHeJ_P0061228 Glmp protein_coding protein_coding MGP_C3HHeJ_T0061229.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87862364 87865651 + MGP_C3HHeJ_P0061229 Glmp protein_coding protein_coding MGP_C3HHeJ_T0061230.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87862364 87865651 + MGP_C3HHeJ_P0061230 Glmp protein_coding protein_coding MGP_C3HHeJ_T0061231.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87863326 87865601 + Glmp protein_coding retained_intron MGP_C3HHeJ_T0061232.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87863460 87865864 + MGP_C3HHeJ_P0061232 Glmp protein_coding protein_coding MGP_C3HHeJ_T0004216.1 MGP_C3HHeJ_G0003700.1 mouse_genomes_project 3 95105106 95108054 - B230398E01Rik antisense antisense MGP_C3HHeJ_T0063083.1 MGP_C3HHeJ_G0027526.1 mouse_genomes_project 3 119981453 120885107 + MGP_C3HHeJ_P0063083 Dpyd protein_coding protein_coding MGP_C3HHeJ_T0063084.1 MGP_C3HHeJ_G0027526.1 mouse_genomes_project 3 119981454 120219069 + Dpyd protein_coding retained_intron MGP_C3HHeJ_T0063085.1 MGP_C3HHeJ_G0027526.1 mouse_genomes_project 3 119981501 120203201 + Dpyd protein_coding retained_intron MGP_C3HHeJ_T0063086.1 MGP_C3HHeJ_G0027526.1 mouse_genomes_project 3 119981504 120095394 + MGP_C3HHeJ_P0063086 Dpyd protein_coding protein_coding MGP_C3HHeJ_T0063087.1 MGP_C3HHeJ_G0027526.1 mouse_genomes_project 3 119981510 119982477 + Dpyd protein_coding retained_intron MGP_C3HHeJ_T0063088.1 MGP_C3HHeJ_G0027526.1 mouse_genomes_project 3 120233287 120334269 + Dpyd protein_coding retained_intron MGP_C3HHeJ_T0004155.1 MGP_C3HHeJ_G0003653.1 mouse_genomes_project 3 34896140 34903949 - Gm12531 antisense antisense MGP_C3HHeJ_T0004156.1 MGP_C3HHeJ_G0003653.1 mouse_genomes_project 3 34896142 34903944 - Gm12531 antisense antisense MGP_C3HHeJ_T0007685.1 MGP_C3HHeJ_G0006281.1 mouse_genomes_project 3 152018824 152127575 - Gm31121 lincRNA lincRNA MGP_C3HHeJ_T0014136.1 MGP_C3HHeJ_G0012240.1 mouse_genomes_project 3 126613395 126614407 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001227.1 MGP_C3HHeJ_G0001159.1 mouse_genomes_project 3 89937962 89940519 + TEC TEC MGP_C3HHeJ_T0062289.1 MGP_C3HHeJ_G0027343.1 mouse_genomes_project 3 97542225 97565943 - MGP_C3HHeJ_P0062289 Bcl9 protein_coding protein_coding MGP_C3HHeJ_T0062290.1 MGP_C3HHeJ_G0027343.1 mouse_genomes_project 3 97543191 97555086 - MGP_C3HHeJ_P0062290 Bcl9 protein_coding protein_coding MGP_C3HHeJ_T0062291.1 MGP_C3HHeJ_G0027343.1 mouse_genomes_project 3 97549026 97552573 - Bcl9 protein_coding processed_transcript MGP_C3HHeJ_T0062292.1 MGP_C3HHeJ_G0027343.1 mouse_genomes_project 3 97553074 97566798 - Bcl9 protein_coding retained_intron MGP_C3HHeJ_T0062293.1 MGP_C3HHeJ_G0027343.1 mouse_genomes_project 3 97555106 97567314 - Bcl9 protein_coding processed_transcript MGP_C3HHeJ_T0062294.1 MGP_C3HHeJ_G0027343.1 mouse_genomes_project 3 97555131 97638830 - Bcl9 protein_coding processed_transcript MGP_C3HHeJ_T0062295.1 MGP_C3HHeJ_G0027343.1 mouse_genomes_project 3 97555131 97562556 - Bcl9 protein_coding processed_transcript MGP_C3HHeJ_T0062296.1 MGP_C3HHeJ_G0027343.1 mouse_genomes_project 3 97560403 97562788 - Bcl9 protein_coding retained_intron MGP_C3HHeJ_T0061510.1 MGP_C3HHeJ_G0027148.1 mouse_genomes_project 3 88893966 88909008 - MGP_C3HHeJ_P0061510 Dcst1 protein_coding protein_coding MGP_C3HHeJ_T0061511.1 MGP_C3HHeJ_G0027148.1 mouse_genomes_project 3 88894770 88899294 - Dcst1 protein_coding retained_intron MGP_C3HHeJ_T0061512.1 MGP_C3HHeJ_G0027148.1 mouse_genomes_project 3 88896468 88899264 - Dcst1 protein_coding processed_transcript MGP_C3HHeJ_T0061513.1 MGP_C3HHeJ_G0027148.1 mouse_genomes_project 3 88897376 88898646 - Dcst1 protein_coding retained_intron MGP_C3HHeJ_T0061514.1 MGP_C3HHeJ_G0027148.1 mouse_genomes_project 3 88901255 88908017 - Dcst1 protein_coding retained_intron MGP_C3HHeJ_T0061515.1 MGP_C3HHeJ_G0027148.1 mouse_genomes_project 3 88901340 88908018 - Dcst1 protein_coding retained_intron MGP_C3HHeJ_T0004334.1 MGP_C3HHeJ_G0003775.1 mouse_genomes_project 3 156570321 156575505 + Gm43400 antisense antisense MGP_C3HHeJ_T0060704.1 MGP_C3HHeJ_G0026984.1 mouse_genomes_project 3 62766126 62781659 - MGP_C3HHeJ_P0060704 protein_coding protein_coding MGP_C3HHeJ_T0011436.1 MGP_C3HHeJ_G0009569.1 mouse_genomes_project 3 16646013 16646325 + Gm22282 misc_RNA misc_RNA MGP_C3HHeJ_T0004276.1 MGP_C3HHeJ_G0003732.1 mouse_genomes_project 3 110037739 110039810 + Gm43221 antisense antisense MGP_C3HHeJ_T0017784.1 MGP_C3HHeJ_G0015286.1 mouse_genomes_project 3 125102134 125102988 - Snhg8 processed_transcript lincRNA MGP_C3HHeJ_T0017785.1 MGP_C3HHeJ_G0015286.1 mouse_genomes_project 3 125102137 125102914 - Snhg8 processed_transcript retained_intron MGP_C3HHeJ_T0017786.1 MGP_C3HHeJ_G0015286.1 mouse_genomes_project 3 125102139 125102917 - Snhg8 processed_transcript lincRNA MGP_C3HHeJ_T0063872.1 MGP_C3HHeJ_G0027675.1 mouse_genomes_project 3 148864148 148879586 - MGP_C3HHeJ_P0063872 Rpf1 protein_coding protein_coding MGP_C3HHeJ_T0063873.1 MGP_C3HHeJ_G0027675.1 mouse_genomes_project 3 148864536 148866417 - MGP_C3HHeJ_P0063873 Rpf1 protein_coding protein_coding MGP_C3HHeJ_T0063874.1 MGP_C3HHeJ_G0027675.1 mouse_genomes_project 3 148864615 148866685 - Rpf1 protein_coding retained_intron MGP_C3HHeJ_T0063875.1 MGP_C3HHeJ_G0027675.1 mouse_genomes_project 3 148866365 148879208 - Rpf1 protein_coding processed_transcript MGP_C3HHeJ_T0063876.1 MGP_C3HHeJ_G0027675.1 mouse_genomes_project 3 148868987 148879568 - MGP_C3HHeJ_P0063876 Rpf1 protein_coding protein_coding MGP_C3HHeJ_T0060965.1 MGP_C3HHeJ_G0027044.1 mouse_genomes_project 3 81615464 81640285 + MGP_C3HHeJ_P0060965 Map9 protein_coding protein_coding MGP_C3HHeJ_T0060966.1 MGP_C3HHeJ_G0027044.1 mouse_genomes_project 3 81615492 81635787 + MGP_C3HHeJ_P0060966 Map9 protein_coding protein_coding MGP_C3HHeJ_T0060967.1 MGP_C3HHeJ_G0027044.1 mouse_genomes_project 3 81615492 81651976 + MGP_C3HHeJ_P0060967 Map9 protein_coding protein_coding MGP_C3HHeJ_T0060968.1 MGP_C3HHeJ_G0027044.1 mouse_genomes_project 3 81615590 81640221 + MGP_C3HHeJ_P0060968 Map9 protein_coding protein_coding MGP_C3HHeJ_T0060969.1 MGP_C3HHeJ_G0027044.1 mouse_genomes_project 3 81615607 81651976 + MGP_C3HHeJ_P0060969 Map9 protein_coding protein_coding MGP_C3HHeJ_T0060970.1 MGP_C3HHeJ_G0027044.1 mouse_genomes_project 3 81636537 81638629 + Map9 protein_coding retained_intron MGP_C3HHeJ_T0060971.1 MGP_C3HHeJ_G0027044.1 mouse_genomes_project 3 81636898 81640003 + MGP_C3HHeJ_P0060971 Map9 protein_coding protein_coding MGP_C3HHeJ_T0013787.1 MGP_C3HHeJ_G0011891.1 mouse_genomes_project 3 14482494 14482828 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101186.1 MGP_C3HHeJ_G0039332.1 mouse_genomes_project 3 54195678 54196642 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101187.1 MGP_C3HHeJ_G0039332.1 mouse_genomes_project 3 54195837 54196974 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0007573.1 MGP_C3HHeJ_G0006190.1 mouse_genomes_project 3 107975746 107992593 + AI504432 lincRNA lincRNA MGP_C3HHeJ_T0062527.1 MGP_C3HHeJ_G0027399.1 mouse_genomes_project 3 104534941 104586493 - MGP_C3HHeJ_P0062527 Hipk1 protein_coding protein_coding MGP_C3HHeJ_T0062528.1 MGP_C3HHeJ_G0027399.1 mouse_genomes_project 3 104538688 104586011 - MGP_C3HHeJ_P0062528 Hipk1 protein_coding protein_coding MGP_C3HHeJ_T0062529.1 MGP_C3HHeJ_G0027399.1 mouse_genomes_project 3 104538786 104586186 - MGP_C3HHeJ_P0062529 Hipk1 protein_coding protein_coding MGP_C3HHeJ_T0062530.1 MGP_C3HHeJ_G0027399.1 mouse_genomes_project 3 104540282 104586491 - MGP_C3HHeJ_P0062530 Hipk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062531.1 MGP_C3HHeJ_G0027399.1 mouse_genomes_project 3 104543241 104546165 - Hipk1 protein_coding retained_intron MGP_C3HHeJ_T0062532.1 MGP_C3HHeJ_G0027399.1 mouse_genomes_project 3 104544490 104546114 - Hipk1 protein_coding retained_intron MGP_C3HHeJ_T0062533.1 MGP_C3HHeJ_G0027399.1 mouse_genomes_project 3 104549259 104586205 - Hipk1 protein_coding retained_intron MGP_C3HHeJ_T0017779.1 MGP_C3HHeJ_G0015284.1 mouse_genomes_project 3 123839741 123847366 - processed_transcript retained_intron MGP_C3HHeJ_T0059982.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28484058 28553944 - MGP_C3HHeJ_P0059982 Phc3 protein_coding protein_coding MGP_C3HHeJ_T0059983.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28484211 28553948 - MGP_C3HHeJ_P0059983 Phc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059984.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28487527 28550461 - MGP_C3HHeJ_P0059984 Phc3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0059985.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28491471 28553948 - MGP_C3HHeJ_P0059985 Phc3 protein_coding protein_coding MGP_C3HHeJ_T0059986.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28491672 28553948 - MGP_C3HHeJ_P0059986 Phc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059987.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28491998 28553942 - MGP_C3HHeJ_P0059987 Phc3 protein_coding protein_coding MGP_C3HHeJ_T0059988.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28491998 28553942 - MGP_C3HHeJ_P0059988 Phc3 protein_coding protein_coding MGP_C3HHeJ_T0059989.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28491998 28553942 - MGP_C3HHeJ_P0059989 Phc3 protein_coding protein_coding MGP_C3HHeJ_T0059990.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28505323 28517407 - Phc3 protein_coding retained_intron MGP_C3HHeJ_T0059991.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28513415 28553958 - MGP_C3HHeJ_P0059991 Phc3 protein_coding protein_coding MGP_C3HHeJ_T0059992.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28542935 28550483 - Phc3 protein_coding retained_intron MGP_C3HHeJ_T0007531.1 MGP_C3HHeJ_G0006154.1 mouse_genomes_project 3 89580829 89583395 + Gm19710 lincRNA lincRNA MGP_C3HHeJ_T0007532.1 MGP_C3HHeJ_G0006154.1 mouse_genomes_project 3 89583184 89604347 + Gm19710 lincRNA lincRNA MGP_C3HHeJ_T0062501.1 MGP_C3HHeJ_G0027393.1 mouse_genomes_project 3 103919944 103927450 + MGP_C3HHeJ_P0062501 Bcas2 protein_coding protein_coding MGP_C3HHeJ_T0062502.1 MGP_C3HHeJ_G0027393.1 mouse_genomes_project 3 103919992 103927123 + Bcas2 protein_coding retained_intron MGP_C3HHeJ_T0062503.1 MGP_C3HHeJ_G0027393.1 mouse_genomes_project 3 103920038 103927125 + Bcas2 protein_coding retained_intron MGP_C3HHeJ_T0062504.1 MGP_C3HHeJ_G0027393.1 mouse_genomes_project 3 103920051 103926745 + MGP_C3HHeJ_P0062504 Bcas2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062505.1 MGP_C3HHeJ_G0027393.1 mouse_genomes_project 3 103920061 103927464 + MGP_C3HHeJ_P0062505 Bcas2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062506.1 MGP_C3HHeJ_G0027393.1 mouse_genomes_project 3 103920074 103922845 + Bcas2 protein_coding retained_intron MGP_C3HHeJ_T0063631.1 MGP_C3HHeJ_G0027623.1 mouse_genomes_project 3 140088798 140130093 - MGP_C3HHeJ_P0063631 Mttp protein_coding protein_coding MGP_C3HHeJ_T0063632.1 MGP_C3HHeJ_G0027623.1 mouse_genomes_project 3 140089998 140141725 - MGP_C3HHeJ_P0063632 Mttp protein_coding unknown_likely_coding MGP_C3HHeJ_T0063633.1 MGP_C3HHeJ_G0027623.1 mouse_genomes_project 3 140089998 140141681 - MGP_C3HHeJ_P0063633 Mttp protein_coding protein_coding MGP_C3HHeJ_T0063634.1 MGP_C3HHeJ_G0027623.1 mouse_genomes_project 3 140140555 140143257 - Mttp protein_coding retained_intron MGP_C3HHeJ_T0010450.1 MGP_C3HHeJ_G0008583.1 mouse_genomes_project 3 95150844 95150916 + Mir7013 miRNA miRNA MGP_C3HHeJ_T0013960.1 MGP_C3HHeJ_G0012064.1 mouse_genomes_project 3 70811248 70812213 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064178.1 MGP_C3HHeJ_G0027719.1 mouse_genomes_project 3 162397781 162420987 + MGP_C3HHeJ_P0064178 Rpe65 protein_coding protein_coding MGP_C3HHeJ_T0064179.1 MGP_C3HHeJ_G0027719.1 mouse_genomes_project 3 162397824 162405005 + MGP_C3HHeJ_P0064179 Rpe65 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064180.1 MGP_C3HHeJ_G0027719.1 mouse_genomes_project 3 162397839 162420458 + MGP_C3HHeJ_P0064180 Rpe65 protein_coding protein_coding MGP_C3HHeJ_T0063766.1 MGP_C3HHeJ_G0027650.1 mouse_genomes_project 3 146760666 146788026 + protein_coding processed_transcript MGP_C3HHeJ_T0063767.1 MGP_C3HHeJ_G0027650.1 mouse_genomes_project 3 146760788 146788449 + MGP_C3HHeJ_P0063767 protein_coding protein_coding MGP_C3HHeJ_T0063768.1 MGP_C3HHeJ_G0027650.1 mouse_genomes_project 3 146761055 146788430 + MGP_C3HHeJ_P0063768 protein_coding protein_coding MGP_C3HHeJ_T0063769.1 MGP_C3HHeJ_G0027650.1 mouse_genomes_project 3 146761076 146763775 + protein_coding retained_intron MGP_C3HHeJ_T0063770.1 MGP_C3HHeJ_G0027650.1 mouse_genomes_project 3 146768014 146786201 + MGP_C3HHeJ_P0063770 protein_coding protein_coding MGP_C3HHeJ_T0063771.1 MGP_C3HHeJ_G0027650.1 mouse_genomes_project 3 146781305 146782359 + protein_coding retained_intron MGP_C3HHeJ_T0017780.1 MGP_C3HHeJ_G0015285.1 mouse_genomes_project 3 124335229 124377350 - 4930447N08Rik processed_transcript antisense MGP_C3HHeJ_T0017781.1 MGP_C3HHeJ_G0015285.1 mouse_genomes_project 3 124342814 124377449 - 4930447N08Rik processed_transcript retained_intron MGP_C3HHeJ_T0017782.1 MGP_C3HHeJ_G0015285.1 mouse_genomes_project 3 124369591 124377295 - 4930447N08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017783.1 MGP_C3HHeJ_G0015285.1 mouse_genomes_project 3 124369598 124377382 - 4930447N08Rik processed_transcript antisense MGP_C3HHeJ_T0013919.1 MGP_C3HHeJ_G0012023.1 mouse_genomes_project 3 59255981 59256139 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014097.1 MGP_C3HHeJ_G0012201.1 mouse_genomes_project 3 113743650 113744043 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007366.1 MGP_C3HHeJ_G0006036.1 mouse_genomes_project 3 6692108 6723037 + C030034L19Rik lincRNA lincRNA MGP_C3HHeJ_T0007367.1 MGP_C3HHeJ_G0006036.1 mouse_genomes_project 3 6692112 6723952 + C030034L19Rik lincRNA lincRNA MGP_C3HHeJ_T0007368.1 MGP_C3HHeJ_G0006036.1 mouse_genomes_project 3 6692124 6702954 + C030034L19Rik lincRNA lincRNA MGP_C3HHeJ_T0001139.1 MGP_C3HHeJ_G0001073.1 mouse_genomes_project 3 43416625 43419764 + TEC TEC MGP_C3HHeJ_T0060831.1 MGP_C3HHeJ_G0027014.1 mouse_genomes_project 3 68603573 68606049 + Nmd3 protein_coding retained_intron MGP_C3HHeJ_T0060832.1 MGP_C3HHeJ_G0027014.1 mouse_genomes_project 3 68603573 68637657 + MGP_C3HHeJ_P0060832 Nmd3 protein_coding protein_coding MGP_C3HHeJ_T0060833.1 MGP_C3HHeJ_G0027014.1 mouse_genomes_project 3 68603620 68616457 + MGP_C3HHeJ_P0060833 Nmd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060834.1 MGP_C3HHeJ_G0027014.1 mouse_genomes_project 3 68603671 68611955 + MGP_C3HHeJ_P0060834 Nmd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060835.1 MGP_C3HHeJ_G0027014.1 mouse_genomes_project 3 68603678 68613395 + Nmd3 protein_coding retained_intron MGP_C3HHeJ_T0060836.1 MGP_C3HHeJ_G0027014.1 mouse_genomes_project 3 68603843 68607830 + MGP_C3HHeJ_P0060836 Nmd3 protein_coding protein_coding MGP_C3HHeJ_T0060837.1 MGP_C3HHeJ_G0027014.1 mouse_genomes_project 3 68605830 68621173 + Nmd3 protein_coding retained_intron MGP_C3HHeJ_T0060838.1 MGP_C3HHeJ_G0027014.1 mouse_genomes_project 3 68627526 68630161 + Nmd3 protein_coding retained_intron MGP_C3HHeJ_T0060095.1 MGP_C3HHeJ_G0026863.1 mouse_genomes_project 3 31748895 31801034 + MGP_C3HHeJ_P0060095 Fxr1 protein_coding protein_coding MGP_C3HHeJ_T0060096.1 MGP_C3HHeJ_G0026863.1 mouse_genomes_project 3 31749542 31801063 + MGP_C3HHeJ_P0060096 Fxr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060097.1 MGP_C3HHeJ_G0026863.1 mouse_genomes_project 3 31749549 31801037 + MGP_C3HHeJ_P0060097 Fxr1 protein_coding protein_coding MGP_C3HHeJ_T0060098.1 MGP_C3HHeJ_G0026863.1 mouse_genomes_project 3 31749552 31801037 + MGP_C3HHeJ_P0060098 Fxr1 protein_coding protein_coding MGP_C3HHeJ_T0060099.1 MGP_C3HHeJ_G0026863.1 mouse_genomes_project 3 31749552 31802014 + MGP_C3HHeJ_P0060099 Fxr1 protein_coding protein_coding MGP_C3HHeJ_T0060100.1 MGP_C3HHeJ_G0026863.1 mouse_genomes_project 3 31749557 31795586 + MGP_C3HHeJ_P0060100 Fxr1 protein_coding protein_coding MGP_C3HHeJ_T0060101.1 MGP_C3HHeJ_G0026863.1 mouse_genomes_project 3 31770156 31772290 + Fxr1 protein_coding retained_intron MGP_C3HHeJ_T0060102.1 MGP_C3HHeJ_G0026863.1 mouse_genomes_project 3 31770159 31777157 + MGP_C3HHeJ_P0060102 Fxr1 protein_coding protein_coding MGP_C3HHeJ_T0060103.1 MGP_C3HHeJ_G0026863.1 mouse_genomes_project 3 31777251 31779739 + Fxr1 protein_coding retained_intron MGP_C3HHeJ_T0013873.1 MGP_C3HHeJ_G0011977.1 mouse_genomes_project 3 45307967 45308433 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101973.1 MGP_C3HHeJ_G0039938.1 mouse_genomes_project 3 107476537 107476956 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0062166.1 MGP_C3HHeJ_G0027307.1 mouse_genomes_project 3 96247746 96306058 - MGP_C3HHeJ_P0062166 Vps45 protein_coding protein_coding MGP_C3HHeJ_T0062167.1 MGP_C3HHeJ_G0027307.1 mouse_genomes_project 3 96292743 96305422 - Vps45 protein_coding retained_intron MGP_C3HHeJ_T0062168.1 MGP_C3HHeJ_G0027307.1 mouse_genomes_project 3 96304478 96305311 - Vps45 protein_coding processed_transcript MGP_C3HHeJ_T0007478.1 MGP_C3HHeJ_G0006117.1 mouse_genomes_project 3 62020513 62041219 + Gm34240 lincRNA lincRNA MGP_C3HHeJ_T0060907.1 MGP_C3HHeJ_G0027031.1 mouse_genomes_project 3 78816259 78841929 - MGP_C3HHeJ_P0060907 Etfdh protein_coding protein_coding MGP_C3HHeJ_T0060908.1 MGP_C3HHeJ_G0027031.1 mouse_genomes_project 3 78816274 78841763 - MGP_C3HHeJ_P0060908 Etfdh protein_coding protein_coding MGP_C3HHeJ_T0060909.1 MGP_C3HHeJ_G0027031.1 mouse_genomes_project 3 78828063 78841749 - Etfdh protein_coding retained_intron MGP_C3HHeJ_T0060910.1 MGP_C3HHeJ_G0027031.1 mouse_genomes_project 3 78829648 78841929 - Etfdh protein_coding retained_intron MGP_C3HHeJ_T0060911.1 MGP_C3HHeJ_G0027031.1 mouse_genomes_project 3 78831827 78841784 - Etfdh protein_coding retained_intron MGP_C3HHeJ_T0060912.1 MGP_C3HHeJ_G0027031.1 mouse_genomes_project 3 78841314 78842566 - Etfdh protein_coding retained_intron MGP_C3HHeJ_T0060913.1 MGP_C3HHeJ_G0027031.1 mouse_genomes_project 3 78841332 78841805 - Etfdh protein_coding processed_transcript MGP_C3HHeJ_T0099251.1 MGP_C3HHeJ_G0037445.1 mouse_genomes_project 3 53649784 53649891 + Gm25132 snRNA snRNA MGP_C3HHeJ_T0062230.1 MGP_C3HHeJ_G0027331.1 mouse_genomes_project 3 96944239 96963018 + MGP_C3HHeJ_P0062230 Itga10 protein_coding protein_coding MGP_C3HHeJ_T0062231.1 MGP_C3HHeJ_G0027331.1 mouse_genomes_project 3 96944239 96963012 + MGP_C3HHeJ_P0062231 Itga10 protein_coding protein_coding MGP_C3HHeJ_T0062232.1 MGP_C3HHeJ_G0027331.1 mouse_genomes_project 3 96956022 96961658 + Itga10 protein_coding retained_intron MGP_C3HHeJ_T0001336.1 MGP_C3HHeJ_G0001267.1 mouse_genomes_project 3 148673645 148674985 + TEC TEC MGP_C3HHeJ_T0013928.1 MGP_C3HHeJ_G0012032.1 mouse_genomes_project 3 62518405 62518695 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062850.1 MGP_C3HHeJ_G0027478.1 mouse_genomes_project 3 109397299 109422001 - MGP_C3HHeJ_P0062850 Celsr2 protein_coding protein_coding MGP_C3HHeJ_T0062851.1 MGP_C3HHeJ_G0027478.1 mouse_genomes_project 3 109398670 109405400 - MGP_C3HHeJ_P0062851 Celsr2 protein_coding protein_coding MGP_C3HHeJ_T0062852.1 MGP_C3HHeJ_G0027478.1 mouse_genomes_project 3 109398827 109399882 - Celsr2 protein_coding processed_transcript MGP_C3HHeJ_T0062853.1 MGP_C3HHeJ_G0027478.1 mouse_genomes_project 3 109399048 109399973 - Celsr2 protein_coding retained_intron MGP_C3HHeJ_T0062854.1 MGP_C3HHeJ_G0027478.1 mouse_genomes_project 3 109399983 109400751 - Celsr2 protein_coding retained_intron MGP_C3HHeJ_T0062855.1 MGP_C3HHeJ_G0027478.1 mouse_genomes_project 3 109402008 109402942 - Celsr2 protein_coding retained_intron MGP_C3HHeJ_T0062856.1 MGP_C3HHeJ_G0027478.1 mouse_genomes_project 3 109407708 109409038 - Celsr2 protein_coding retained_intron MGP_C3HHeJ_T0060661.1 MGP_C3HHeJ_G0026974.1 mouse_genomes_project 3 60877275 60998857 + MGP_C3HHeJ_P0060661 Arhgef26 protein_coding protein_coding MGP_C3HHeJ_T0060662.1 MGP_C3HHeJ_G0026974.1 mouse_genomes_project 3 60877930 60913328 + Arhgef26 protein_coding processed_transcript MGP_C3HHeJ_T0060663.1 MGP_C3HHeJ_G0026974.1 mouse_genomes_project 3 60879321 60911719 + Arhgef26 protein_coding retained_intron MGP_C3HHeJ_T0060664.1 MGP_C3HHeJ_G0026974.1 mouse_genomes_project 3 60880032 60914588 + Arhgef26 protein_coding processed_transcript MGP_C3HHeJ_T0060665.1 MGP_C3HHeJ_G0026974.1 mouse_genomes_project 3 60954624 60996848 + MGP_C3HHeJ_P0060665 Arhgef26 protein_coding protein_coding MGP_C3HHeJ_T0060666.1 MGP_C3HHeJ_G0026974.1 mouse_genomes_project 3 60962135 60964967 + Arhgef26 protein_coding retained_intron MGP_C3HHeJ_T0063901.1 MGP_C3HHeJ_G0027681.1 mouse_genomes_project 3 149229619 149321071 + Ttll7 protein_coding retained_intron MGP_C3HHeJ_T0063902.1 MGP_C3HHeJ_G0027681.1 mouse_genomes_project 3 149229619 149364181 + MGP_C3HHeJ_P0063902 Ttll7 protein_coding protein_coding MGP_C3HHeJ_T0063903.1 MGP_C3HHeJ_G0027681.1 mouse_genomes_project 3 149229619 149365440 + MGP_C3HHeJ_P0063903 Ttll7 protein_coding protein_coding MGP_C3HHeJ_T0063904.1 MGP_C3HHeJ_G0027681.1 mouse_genomes_project 3 149274796 149361182 + MGP_C3HHeJ_P0063904 Ttll7 protein_coding protein_coding MGP_C3HHeJ_T0063905.1 MGP_C3HHeJ_G0027681.1 mouse_genomes_project 3 149277276 149279127 + MGP_C3HHeJ_P0063905 Ttll7 protein_coding protein_coding MGP_C3HHeJ_T0063906.1 MGP_C3HHeJ_G0027681.1 mouse_genomes_project 3 149324718 149363351 + Ttll7 protein_coding retained_intron MGP_C3HHeJ_T0101956.1 MGP_C3HHeJ_G0039921.1 mouse_genomes_project 3 87904349 87908418 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001273.1 MGP_C3HHeJ_G0001205.1 mouse_genomes_project 3 123558945 123562183 + TEC TEC MGP_C3HHeJ_T0014103.1 MGP_C3HHeJ_G0012207.1 mouse_genomes_project 3 115774812 115775164 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004305.1 MGP_C3HHeJ_G0003756.1 mouse_genomes_project 3 135770712 136078687 - antisense antisense MGP_C3HHeJ_T0004306.1 MGP_C3HHeJ_G0003756.1 mouse_genomes_project 3 135987861 136078834 - antisense antisense MGP_C3HHeJ_T0017749.1 MGP_C3HHeJ_G0015274.1 mouse_genomes_project 3 96508631 96510290 - Gm20627 processed_transcript lincRNA MGP_C3HHeJ_T0017750.1 MGP_C3HHeJ_G0015274.1 mouse_genomes_project 3 96508633 96509482 - Gm20627 processed_transcript retained_intron MGP_C3HHeJ_T0063260.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128223512 128313776 + Camk2d protein_coding processed_transcript MGP_C3HHeJ_T0063261.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224161 128480137 + MGP_C3HHeJ_P0063261 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063262.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224170 128480135 + MGP_C3HHeJ_P0063262 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063263.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224208 128480139 + MGP_C3HHeJ_P0063263 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063264.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224215 128453556 + MGP_C3HHeJ_P0063264 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063265.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224217 128481550 + MGP_C3HHeJ_P0063265 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063266.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224219 128403202 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063267.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224220 128475686 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063268.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224220 128445798 + MGP_C3HHeJ_P0063268 Camk2d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063269.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224230 128477939 + MGP_C3HHeJ_P0063269 Camk2d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063270.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224245 128479054 + Camk2d protein_coding processed_transcript MGP_C3HHeJ_T0063271.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224307 128478927 + MGP_C3HHeJ_P0063271 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063272.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224416 128481519 + MGP_C3HHeJ_P0063272 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063273.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224518 128478446 + MGP_C3HHeJ_P0063273 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063274.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224551 128314473 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063275.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224609 128478908 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063276.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224624 128479551 + MGP_C3HHeJ_P0063276 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063277.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128412235 128418856 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063278.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128412811 128444570 + Camk2d protein_coding processed_transcript MGP_C3HHeJ_T0063279.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128418104 128442402 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063280.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128429285 128475485 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063281.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128432156 128479237 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063282.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128435645 128476776 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063283.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128435645 128476776 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063284.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128436852 128478403 + MGP_C3HHeJ_P0063284 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063285.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128438437 128440811 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063286.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128439773 128478122 + MGP_C3HHeJ_P0063286 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063287.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128441078 128444171 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0007397.1 MGP_C3HHeJ_G0006055.1 mouse_genomes_project 3 19648450 19660971 - Gm38324 lincRNA lincRNA MGP_C3HHeJ_T0013913.1 MGP_C3HHeJ_G0012017.1 mouse_genomes_project 3 57894330 57899931 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059763.1 MGP_C3HHeJ_G0026799.1 mouse_genomes_project 3 15225489 15226039 + MGP_C3HHeJ_P0059763 Cypt12 protein_coding protein_coding MGP_C3HHeJ_T0014119.1 MGP_C3HHeJ_G0012223.1 mouse_genomes_project 3 122743672 122744276 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100542.1 MGP_C3HHeJ_G0038736.1 mouse_genomes_project 3 63712999 63713125 - Gm25222 snoRNA snoRNA MGP_C3HHeJ_T0013773.1 MGP_C3HHeJ_G0011877.1 mouse_genomes_project 3 10312117 10312460 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014072.1 MGP_C3HHeJ_G0012176.1 mouse_genomes_project 3 106836698 106844278 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014099.1 MGP_C3HHeJ_G0012203.1 mouse_genomes_project 3 114244931 114245762 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001358.1 MGP_C3HHeJ_G0001289.1 mouse_genomes_project 3 159493957 159495632 + TEC TEC MGP_C3HHeJ_T0007359.1 MGP_C3HHeJ_G0006031.1 mouse_genomes_project 3 2671071 2673410 - 4930555M17Rik lincRNA lincRNA MGP_C3HHeJ_T0100559.1 MGP_C3HHeJ_G0038753.1 mouse_genomes_project 3 89592664 89592800 - Gm24608 snoRNA snoRNA MGP_C3HHeJ_T0099245.1 MGP_C3HHeJ_G0037439.1 mouse_genomes_project 3 42918566 42918671 + Gm24997 snRNA snRNA MGP_C3HHeJ_T0007414.1 MGP_C3HHeJ_G0006071.1 mouse_genomes_project 3 32337814 32341534 - Gm43207 lincRNA lincRNA MGP_C3HHeJ_T0010468.1 MGP_C3HHeJ_G0008601.1 mouse_genomes_project 3 129214155 129214221 + Mir302d miRNA miRNA MGP_C3HHeJ_T0063363.1 MGP_C3HHeJ_G0027571.1 mouse_genomes_project 3 131447568 131527664 - MGP_C3HHeJ_P0063363 Egf protein_coding protein_coding MGP_C3HHeJ_T0063364.1 MGP_C3HHeJ_G0027571.1 mouse_genomes_project 3 131447581 131496509 - MGP_C3HHeJ_P0063364 Egf protein_coding protein_coding MGP_C3HHeJ_T0063365.1 MGP_C3HHeJ_G0027571.1 mouse_genomes_project 3 131447583 131496499 - MGP_C3HHeJ_P0063365 Egf protein_coding protein_coding MGP_C3HHeJ_T0063366.1 MGP_C3HHeJ_G0027571.1 mouse_genomes_project 3 131448340 131451571 - Egf protein_coding retained_intron MGP_C3HHeJ_T0063367.1 MGP_C3HHeJ_G0027571.1 mouse_genomes_project 3 131456246 131464038 - Egf protein_coding retained_intron MGP_C3HHeJ_T0063368.1 MGP_C3HHeJ_G0027571.1 mouse_genomes_project 3 131463319 131466231 - Egf protein_coding retained_intron MGP_C3HHeJ_T0063369.1 MGP_C3HHeJ_G0027571.1 mouse_genomes_project 3 131470570 131496508 - MGP_C3HHeJ_P0063369 Egf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063370.1 MGP_C3HHeJ_G0027571.1 mouse_genomes_project 3 131506878 131527664 - Egf protein_coding retained_intron MGP_C3HHeJ_T0063371.1 MGP_C3HHeJ_G0027571.1 mouse_genomes_project 3 131508351 131527664 - Egf protein_coding processed_transcript MGP_C3HHeJ_T0013900.1 MGP_C3HHeJ_G0012004.1 mouse_genomes_project 3 55611273 55611526 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060848.1 MGP_C3HHeJ_G0027019.1 mouse_genomes_project 3 72688597 72767533 - MGP_C3HHeJ_P0060848 Bche protein_coding protein_coding MGP_C3HHeJ_T0060849.1 MGP_C3HHeJ_G0027019.1 mouse_genomes_project 3 72701157 72767360 - Bche protein_coding retained_intron MGP_C3HHeJ_T0060850.1 MGP_C3HHeJ_G0027019.1 mouse_genomes_project 3 72760679 72767385 - MGP_C3HHeJ_P0060850 Bche protein_coding protein_coding MGP_C3HHeJ_T0060851.1 MGP_C3HHeJ_G0027019.1 mouse_genomes_project 3 72763168 72767385 - Bche protein_coding processed_transcript MGP_C3HHeJ_T0099313.1 MGP_C3HHeJ_G0037507.1 mouse_genomes_project 3 140338266 140338425 + Gm23467 snRNA snRNA MGP_C3HHeJ_T0001291.1 MGP_C3HHeJ_G0001223.1 mouse_genomes_project 3 128609996 128611036 - TEC TEC MGP_C3HHeJ_T0014092.1 MGP_C3HHeJ_G0012196.1 mouse_genomes_project 3 112405772 112407300 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062375.1 MGP_C3HHeJ_G0027367.1 mouse_genomes_project 3 100757518 100803538 + MGP_C3HHeJ_P0062375 Gdap2 protein_coding protein_coding MGP_C3HHeJ_T0062376.1 MGP_C3HHeJ_G0027367.1 mouse_genomes_project 3 100757655 100799031 + MGP_C3HHeJ_P0062376 Gdap2 protein_coding protein_coding MGP_C3HHeJ_T0062377.1 MGP_C3HHeJ_G0027367.1 mouse_genomes_project 3 100757681 100765090 + Gdap2 protein_coding processed_transcript MGP_C3HHeJ_T0062378.1 MGP_C3HHeJ_G0027367.1 mouse_genomes_project 3 100791146 100803212 + MGP_C3HHeJ_P0062378 Gdap2 protein_coding protein_coding MGP_C3HHeJ_T0062379.1 MGP_C3HHeJ_G0027367.1 mouse_genomes_project 3 100797247 100799031 + Gdap2 protein_coding retained_intron MGP_C3HHeJ_T0013958.1 MGP_C3HHeJ_G0012062.1 mouse_genomes_project 3 70413591 70414032 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063458.1 MGP_C3HHeJ_G0027590.1 mouse_genomes_project 3 133861118 133958427 + MGP_C3HHeJ_P0063458 Dkk2 protein_coding protein_coding MGP_C3HHeJ_T0098461.1 MGP_C3HHeJ_G0036666.1 mouse_genomes_project 3 106889500 106891023 - Gm42721 sense_intronic sense_intronic MGP_C3HHeJ_T0013881.1 MGP_C3HHeJ_G0011985.1 mouse_genomes_project 3 48240784 48241106 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001182.1 MGP_C3HHeJ_G0001114.1 mouse_genomes_project 3 53835621 53839014 + TEC TEC MGP_C3HHeJ_T0013824.1 MGP_C3HHeJ_G0011928.1 mouse_genomes_project 3 29901422 29902194 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013804.1 MGP_C3HHeJ_G0011908.1 mouse_genomes_project 3 18137988 18139582 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011439.1 MGP_C3HHeJ_G0009572.1 mouse_genomes_project 3 32298209 32298423 + Gm27403 misc_RNA misc_RNA MGP_C3HHeJ_T0004256.1 MGP_C3HHeJ_G0003725.1 mouse_genomes_project 3 106882736 106899123 + Gm42722 antisense antisense MGP_C3HHeJ_T0007403.1 MGP_C3HHeJ_G0006061.1 mouse_genomes_project 3 27459451 27485989 + Mannr lincRNA lincRNA MGP_C3HHeJ_T0061159.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87429092 87436401 - Rrnad1 protein_coding retained_intron MGP_C3HHeJ_T0061160.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87429092 87436401 - MGP_C3HHeJ_P0061160 Rrnad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061161.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87429398 87436418 - MGP_C3HHeJ_P0061161 Rrnad1 protein_coding protein_coding MGP_C3HHeJ_T0061162.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87429807 87435635 - Rrnad1 protein_coding retained_intron MGP_C3HHeJ_T0061163.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87430149 87434532 - MGP_C3HHeJ_P0061163 Rrnad1 protein_coding protein_coding MGP_C3HHeJ_T0061164.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87430150 87431767 - Rrnad1 protein_coding processed_transcript MGP_C3HHeJ_T0061165.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87430154 87436418 - Rrnad1 protein_coding retained_intron MGP_C3HHeJ_T0061166.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87430154 87436991 - Rrnad1 protein_coding retained_intron MGP_C3HHeJ_T0061167.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87430274 87436857 - MGP_C3HHeJ_P0061167 Rrnad1 protein_coding protein_coding MGP_C3HHeJ_T0061168.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87431544 87433366 - Rrnad1 protein_coding retained_intron MGP_C3HHeJ_T0061169.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87431717 87433982 - Rrnad1 protein_coding processed_transcript MGP_C3HHeJ_T0061170.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87431747 87436412 - MGP_C3HHeJ_P0061170 Rrnad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061105.1 MGP_C3HHeJ_G0027080.1 mouse_genomes_project 3 87003750 87018471 + MGP_C3HHeJ_P0061105 Etv3 protein_coding protein_coding MGP_C3HHeJ_T0061106.1 MGP_C3HHeJ_G0027080.1 mouse_genomes_project 3 87003921 87018457 + MGP_C3HHeJ_P0061106 Etv3 protein_coding protein_coding MGP_C3HHeJ_T0061107.1 MGP_C3HHeJ_G0027080.1 mouse_genomes_project 3 87003950 87018471 + Etv3 protein_coding retained_intron MGP_C3HHeJ_T0061108.1 MGP_C3HHeJ_G0027080.1 mouse_genomes_project 3 87003957 87009387 + MGP_C3HHeJ_P0061108 Etv3 protein_coding protein_coding MGP_C3HHeJ_T0061109.1 MGP_C3HHeJ_G0027080.1 mouse_genomes_project 3 87003961 87009390 + Etv3 protein_coding retained_intron MGP_C3HHeJ_T0060148.1 MGP_C3HHeJ_G0026871.1 mouse_genomes_project 3 33964451 33983777 + MGP_C3HHeJ_P0060148 D3Ertd254e protein_coding protein_coding MGP_C3HHeJ_T0060149.1 MGP_C3HHeJ_G0026871.1 mouse_genomes_project 3 33964596 33976109 + MGP_C3HHeJ_P0060149 D3Ertd254e protein_coding protein_coding MGP_C3HHeJ_T0060150.1 MGP_C3HHeJ_G0026871.1 mouse_genomes_project 3 33972956 33983770 + MGP_C3HHeJ_P0060150 D3Ertd254e protein_coding protein_coding MGP_C3HHeJ_T0060494.1 MGP_C3HHeJ_G0026934.1 mouse_genomes_project 3 53230836 53249532 - MGP_C3HHeJ_P0060494 Sertm1 protein_coding protein_coding MGP_C3HHeJ_T0060495.1 MGP_C3HHeJ_G0026934.1 mouse_genomes_project 3 53230839 53250388 - MGP_C3HHeJ_P0060495 Sertm1 protein_coding protein_coding MGP_C3HHeJ_T0001323.1 MGP_C3HHeJ_G0001254.1 mouse_genomes_project 3 134857357 134859083 - TEC TEC MGP_C3HHeJ_T0004212.1 MGP_C3HHeJ_G0003696.1 mouse_genomes_project 3 90063337 90068924 + Gm16048 antisense antisense MGP_C3HHeJ_T0059967.1 MGP_C3HHeJ_G0026840.1 mouse_genomes_project 3 28327649 28348370 + MGP_C3HHeJ_P0059967 Samd7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059968.1 MGP_C3HHeJ_G0026840.1 mouse_genomes_project 3 28327696 28348378 + MGP_C3HHeJ_P0059968 Samd7 protein_coding protein_coding MGP_C3HHeJ_T0059969.1 MGP_C3HHeJ_G0026840.1 mouse_genomes_project 3 28332399 28346712 + MGP_C3HHeJ_P0059969 Samd7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059970.1 MGP_C3HHeJ_G0026840.1 mouse_genomes_project 3 28337506 28338745 + Samd7 protein_coding retained_intron MGP_C3HHeJ_T0063449.1 MGP_C3HHeJ_G0027588.1 mouse_genomes_project 3 133166050 133193329 - MGP_C3HHeJ_P0063449 Sgms2 protein_coding protein_coding MGP_C3HHeJ_T0063450.1 MGP_C3HHeJ_G0027588.1 mouse_genomes_project 3 133190509 133193336 - MGP_C3HHeJ_P0063450 Sgms2 protein_coding protein_coding MGP_C3HHeJ_T0063451.1 MGP_C3HHeJ_G0027588.1 mouse_genomes_project 3 133190568 133253268 - MGP_C3HHeJ_P0063451 Sgms2 protein_coding protein_coding MGP_C3HHeJ_T0063452.1 MGP_C3HHeJ_G0027588.1 mouse_genomes_project 3 133190633 133254200 - Sgms2 protein_coding processed_transcript MGP_C3HHeJ_T0013964.1 MGP_C3HHeJ_G0012068.1 mouse_genomes_project 3 71609035 71609549 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013985.1 MGP_C3HHeJ_G0012089.1 mouse_genomes_project 3 79618120 79618438 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062357.1 MGP_C3HHeJ_G0027363.1 mouse_genomes_project 3 99697069 99782228 + MGP_C3HHeJ_P0062357 Wars2 protein_coding protein_coding MGP_C3HHeJ_T0062358.1 MGP_C3HHeJ_G0027363.1 mouse_genomes_project 3 99697111 99779300 + MGP_C3HHeJ_P0062358 Wars2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062359.1 MGP_C3HHeJ_G0027363.1 mouse_genomes_project 3 99697132 99798549 + MGP_C3HHeJ_P0062359 Wars2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062360.1 MGP_C3HHeJ_G0027363.1 mouse_genomes_project 3 99697135 99776698 + MGP_C3HHeJ_P0062360 Wars2 protein_coding protein_coding MGP_C3HHeJ_T0062361.1 MGP_C3HHeJ_G0027363.1 mouse_genomes_project 3 99697204 99764764 + Wars2 protein_coding retained_intron MGP_C3HHeJ_T0063595.1 MGP_C3HHeJ_G0027613.1 mouse_genomes_project 3 139319464 139411948 + MGP_C3HHeJ_P0063595 Emcn protein_coding protein_coding MGP_C3HHeJ_T0063596.1 MGP_C3HHeJ_G0027613.1 mouse_genomes_project 3 139319487 139400985 + Emcn protein_coding retained_intron MGP_C3HHeJ_T0063597.1 MGP_C3HHeJ_G0027613.1 mouse_genomes_project 3 139319540 139410832 + MGP_C3HHeJ_P0063597 Emcn protein_coding protein_coding MGP_C3HHeJ_T0063598.1 MGP_C3HHeJ_G0027613.1 mouse_genomes_project 3 139319571 139407107 + MGP_C3HHeJ_P0063598 Emcn protein_coding protein_coding MGP_C3HHeJ_T0007693.1 MGP_C3HHeJ_G0006285.1 mouse_genomes_project 3 153877545 153881817 + Gm42949 lincRNA lincRNA MGP_C3HHeJ_T0063089.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121188791 121254689 - MGP_C3HHeJ_P0063089 Ptbp2 protein_coding protein_coding MGP_C3HHeJ_T0063090.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121188791 121254277 - MGP_C3HHeJ_P0063090 Ptbp2 protein_coding protein_coding MGP_C3HHeJ_T0063091.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121190370 121254123 - MGP_C3HHeJ_P0063091 Ptbp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063092.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121190395 121196202 - MGP_C3HHeJ_P0063092 Ptbp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063093.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121190434 121211598 - Ptbp2 protein_coding retained_intron MGP_C3HHeJ_T0063094.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121190859 121194449 - Ptbp2 protein_coding retained_intron MGP_C3HHeJ_T0063095.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121194168 121211229 - MGP_C3HHeJ_P0063095 Ptbp2 protein_coding protein_coding MGP_C3HHeJ_T0063096.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121209440 121213487 - Ptbp2 protein_coding retained_intron MGP_C3HHeJ_T0063097.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121217354 121254175 - MGP_C3HHeJ_P0063097 Ptbp2 protein_coding protein_coding MGP_C3HHeJ_T0063098.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121218630 121255349 - Ptbp2 protein_coding processed_transcript MGP_C3HHeJ_T0063099.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121231753 121255351 - Ptbp2 protein_coding processed_transcript MGP_C3HHeJ_T0063100.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121231758 121254576 - Ptbp2 protein_coding processed_transcript MGP_C3HHeJ_T0063101.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121231760 121254196 - MGP_C3HHeJ_P0063101 Ptbp2 protein_coding protein_coding MGP_C3HHeJ_T0014207.1 MGP_C3HHeJ_G0012311.1 mouse_genomes_project 3 151655736 151656195 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061805.1 MGP_C3HHeJ_G0027230.1 mouse_genomes_project 3 92640571 92642261 - MGP_C3HHeJ_P0061805 Lce1i protein_coding protein_coding MGP_C3HHeJ_T0001301.1 MGP_C3HHeJ_G0001233.1 mouse_genomes_project 3 129396234 129398594 - TEC TEC MGP_C3HHeJ_T0062455.1 MGP_C3HHeJ_G0027387.1 mouse_genomes_project 3 103674415 103700310 - MGP_C3HHeJ_P0062455 Nr1h5 protein_coding protein_coding MGP_C3HHeJ_T0062456.1 MGP_C3HHeJ_G0027387.1 mouse_genomes_project 3 103675627 103694619 - MGP_C3HHeJ_P0062456 Nr1h5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062457.1 MGP_C3HHeJ_G0027387.1 mouse_genomes_project 3 103675627 103694619 - MGP_C3HHeJ_P0062457 Nr1h5 protein_coding protein_coding MGP_C3HHeJ_T0062458.1 MGP_C3HHeJ_G0027387.1 mouse_genomes_project 3 103675627 103694619 - MGP_C3HHeJ_P0062458 Nr1h5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062459.1 MGP_C3HHeJ_G0027387.1 mouse_genomes_project 3 103675627 103694619 - MGP_C3HHeJ_P0062459 Nr1h5 protein_coding protein_coding MGP_C3HHeJ_T0001165.1 MGP_C3HHeJ_G0001098.1 mouse_genomes_project 3 50104499 50107115 - TEC TEC MGP_C3HHeJ_T0007643.1 MGP_C3HHeJ_G0006248.1 mouse_genomes_project 3 141821341 141827291 - lincRNA lincRNA MGP_C3HHeJ_T0098437.1 MGP_C3HHeJ_G0036642.1 mouse_genomes_project 3 104870889 104872033 - Gm42696 sense_intronic sense_intronic MGP_C3HHeJ_T0062666.1 MGP_C3HHeJ_G0027429.1 mouse_genomes_project 3 106878165 106896243 - MGP_C3HHeJ_P0062666 Pifo protein_coding protein_coding MGP_C3HHeJ_T0062667.1 MGP_C3HHeJ_G0027429.1 mouse_genomes_project 3 106878174 106882673 - MGP_C3HHeJ_P0062667 Pifo protein_coding protein_coding MGP_C3HHeJ_T0063140.1 MGP_C3HHeJ_G0027535.1 mouse_genomes_project 3 123279219 123339728 - MGP_C3HHeJ_P0063140 Abcd3 protein_coding protein_coding MGP_C3HHeJ_T0063141.1 MGP_C3HHeJ_G0027535.1 mouse_genomes_project 3 123279352 123339864 - MGP_C3HHeJ_P0063141 Abcd3 protein_coding protein_coding MGP_C3HHeJ_T0063142.1 MGP_C3HHeJ_G0027535.1 mouse_genomes_project 3 123280201 123339728 - MGP_C3HHeJ_P0063142 Abcd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063143.1 MGP_C3HHeJ_G0027535.1 mouse_genomes_project 3 123288576 123291063 - Abcd3 protein_coding retained_intron MGP_C3HHeJ_T0063144.1 MGP_C3HHeJ_G0027535.1 mouse_genomes_project 3 123307997 123339471 - Abcd3 protein_coding processed_transcript MGP_C3HHeJ_T0063145.1 MGP_C3HHeJ_G0027535.1 mouse_genomes_project 3 123320550 123339759 - Abcd3 protein_coding retained_intron MGP_C3HHeJ_T0004184.1 MGP_C3HHeJ_G0003676.1 mouse_genomes_project 3 64137306 64161850 - A730090N16Rik antisense antisense MGP_C3HHeJ_T0001343.1 MGP_C3HHeJ_G0001274.1 mouse_genomes_project 3 154759145 154760260 + TEC TEC MGP_C3HHeJ_T0098449.1 MGP_C3HHeJ_G0036654.1 mouse_genomes_project 3 105329720 105332008 - A530041M06Rik sense_intronic sense_intronic MGP_C3HHeJ_T0062189.1 MGP_C3HHeJ_G0027312.1 mouse_genomes_project 3 96451478 96453380 - MGP_C3HHeJ_P0062189 Bola1 protein_coding protein_coding MGP_C3HHeJ_T0062190.1 MGP_C3HHeJ_G0027312.1 mouse_genomes_project 3 96451478 96452477 - MGP_C3HHeJ_P0062190 Bola1 protein_coding protein_coding MGP_C3HHeJ_T0062191.1 MGP_C3HHeJ_G0027312.1 mouse_genomes_project 3 96451753 96469936 - MGP_C3HHeJ_P0062191 Bola1 protein_coding protein_coding MGP_C3HHeJ_T0014028.1 MGP_C3HHeJ_G0012132.1 mouse_genomes_project 3 95528593 95528787 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013901.1 MGP_C3HHeJ_G0012005.1 mouse_genomes_project 3 55634885 55635514 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062445.1 MGP_C3HHeJ_G0027385.1 mouse_genomes_project 3 103499153 103503560 - Tshb protein_coding retained_intron MGP_C3HHeJ_T0062446.1 MGP_C3HHeJ_G0027385.1 mouse_genomes_project 3 103501086 103506054 - MGP_C3HHeJ_P0062446 Tshb protein_coding protein_coding MGP_C3HHeJ_T0062447.1 MGP_C3HHeJ_G0027385.1 mouse_genomes_project 3 103501086 103506014 - MGP_C3HHeJ_P0062447 Tshb protein_coding protein_coding MGP_C3HHeJ_T0062448.1 MGP_C3HHeJ_G0027385.1 mouse_genomes_project 3 103501095 103506058 - MGP_C3HHeJ_P0062448 Tshb protein_coding protein_coding MGP_C3HHeJ_T0062449.1 MGP_C3HHeJ_G0027385.1 mouse_genomes_project 3 103501107 103506014 - MGP_C3HHeJ_P0062449 Tshb protein_coding protein_coding MGP_C3HHeJ_T0062450.1 MGP_C3HHeJ_G0027385.1 mouse_genomes_project 3 103501134 103505823 - MGP_C3HHeJ_P0062450 Tshb protein_coding protein_coding MGP_C3HHeJ_T0100548.1 MGP_C3HHeJ_G0038742.1 mouse_genomes_project 3 78172509 78172641 + Gm23440 snoRNA snoRNA MGP_C3HHeJ_T0007514.1 MGP_C3HHeJ_G0006148.1 mouse_genomes_project 3 85562059 85564832 + Gm37933 lincRNA lincRNA MGP_C3HHeJ_T0062490.1 MGP_C3HHeJ_G0027391.1 mouse_genomes_project 3 103820895 103846454 + MGP_C3HHeJ_P0062490 Ampd1 protein_coding protein_coding MGP_C3HHeJ_T0062491.1 MGP_C3HHeJ_G0027391.1 mouse_genomes_project 3 103820903 103846448 + MGP_C3HHeJ_P0062491 Ampd1 protein_coding protein_coding MGP_C3HHeJ_T0062492.1 MGP_C3HHeJ_G0027391.1 mouse_genomes_project 3 103820934 103835184 + MGP_C3HHeJ_P0062492 Ampd1 protein_coding protein_coding MGP_C3HHeJ_T0062493.1 MGP_C3HHeJ_G0027391.1 mouse_genomes_project 3 103840699 103841727 + Ampd1 protein_coding retained_intron MGP_C3HHeJ_T0062494.1 MGP_C3HHeJ_G0027391.1 mouse_genomes_project 3 103841370 103846440 + MGP_C3HHeJ_P0062494 Ampd1 protein_coding protein_coding MGP_C3HHeJ_T0001279.1 MGP_C3HHeJ_G0001211.1 mouse_genomes_project 3 125278364 125281400 - TEC TEC MGP_C3HHeJ_T0001256.1 MGP_C3HHeJ_G0001188.1 mouse_genomes_project 3 117418552 117419575 + TEC TEC MGP_C3HHeJ_T0011455.1 MGP_C3HHeJ_G0009588.1 mouse_genomes_project 3 126416279 126416577 + Gm23673 misc_RNA misc_RNA MGP_C3HHeJ_T0007695.1 MGP_C3HHeJ_G0006287.1 mouse_genomes_project 3 154570982 154575417 + Gm43619 lincRNA lincRNA MGP_C3HHeJ_T0062734.1 MGP_C3HHeJ_G0027450.1 mouse_genomes_project 3 108398004 108419271 - MGP_C3HHeJ_P0062734 Kcnc4 protein_coding protein_coding MGP_C3HHeJ_T0001128.1 MGP_C3HHeJ_G0001062.1 mouse_genomes_project 3 38705819 38706753 - TEC TEC MGP_C3HHeJ_T0060228.1 MGP_C3HHeJ_G0026886.1 mouse_genomes_project 3 35249510 35264816 - MGP_C3HHeJ_P0060228 Nudt6 protein_coding protein_coding MGP_C3HHeJ_T0060229.1 MGP_C3HHeJ_G0026886.1 mouse_genomes_project 3 35249510 35264138 - MGP_C3HHeJ_P0060229 Nudt6 protein_coding protein_coding MGP_C3HHeJ_T0060230.1 MGP_C3HHeJ_G0026886.1 mouse_genomes_project 3 35249586 35264148 - MGP_C3HHeJ_P0060230 Nudt6 protein_coding protein_coding MGP_C3HHeJ_T0060231.1 MGP_C3HHeJ_G0026886.1 mouse_genomes_project 3 35249675 35255241 - Nudt6 protein_coding processed_transcript MGP_C3HHeJ_T0060232.1 MGP_C3HHeJ_G0026886.1 mouse_genomes_project 3 35249693 35264128 - MGP_C3HHeJ_P0060232 Nudt6 protein_coding protein_coding MGP_C3HHeJ_T0060233.1 MGP_C3HHeJ_G0026886.1 mouse_genomes_project 3 35249952 35264131 - MGP_C3HHeJ_P0060233 Nudt6 protein_coding protein_coding MGP_C3HHeJ_T0060234.1 MGP_C3HHeJ_G0026886.1 mouse_genomes_project 3 35254071 35264115 - MGP_C3HHeJ_P0060234 Nudt6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060235.1 MGP_C3HHeJ_G0026886.1 mouse_genomes_project 3 35256957 35264124 - MGP_C3HHeJ_P0060235 Nudt6 protein_coding protein_coding MGP_C3HHeJ_T0100584.1 MGP_C3HHeJ_G0038778.1 mouse_genomes_project 3 135398147 135398279 - Gm23011 snoRNA snoRNA MGP_C3HHeJ_T0098432.1 MGP_C3HHeJ_G0036637.1 mouse_genomes_project 3 104386095 104387355 + Gm43066 sense_intronic sense_intronic MGP_C3HHeJ_T0062466.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103751035 103792014 + MGP_C3HHeJ_P0062466 Csde1 protein_coding protein_coding MGP_C3HHeJ_T0062467.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103751069 103791821 + MGP_C3HHeJ_P0062467 Csde1 protein_coding protein_coding MGP_C3HHeJ_T0062468.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103751075 103792016 + MGP_C3HHeJ_P0062468 Csde1 protein_coding protein_coding MGP_C3HHeJ_T0062469.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103751082 103791530 + MGP_C3HHeJ_P0062469 Csde1 protein_coding protein_coding MGP_C3HHeJ_T0062470.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103751126 103791634 + MGP_C3HHeJ_P0062470 Csde1 protein_coding protein_coding MGP_C3HHeJ_T0062471.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103759105 103775975 + Csde1 protein_coding retained_intron MGP_C3HHeJ_T0062472.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103759198 103761002 + Csde1 protein_coding retained_intron MGP_C3HHeJ_T0062473.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103760268 103777103 + Csde1 protein_coding processed_transcript MGP_C3HHeJ_T0062474.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103772957 103777858 + Csde1 protein_coding processed_transcript MGP_C3HHeJ_T0062475.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103773216 103777282 + Csde1 protein_coding retained_intron MGP_C3HHeJ_T0062476.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103773245 103780632 + MGP_C3HHeJ_P0062476 Csde1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062477.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103776410 103791616 + MGP_C3HHeJ_P0062477 Csde1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062478.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103776759 103777460 + Csde1 protein_coding retained_intron MGP_C3HHeJ_T0062479.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103783829 103784901 + Csde1 protein_coding retained_intron MGP_C3HHeJ_T0062480.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103789882 103790961 + Csde1 protein_coding retained_intron MGP_C3HHeJ_T0014126.1 MGP_C3HHeJ_G0012230.1 mouse_genomes_project 3 124199115 124199623 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099257.1 MGP_C3HHeJ_G0037451.1 mouse_genomes_project 3 58609616 58609722 - Gm24382 snRNA snRNA MGP_C3HHeJ_T0004196.1 MGP_C3HHeJ_G0003685.1 mouse_genomes_project 3 84690665 84709740 + 1700036G14Rik antisense antisense MGP_C3HHeJ_T0001170.1 MGP_C3HHeJ_G0001102.1 mouse_genomes_project 3 50222515 50225807 - TEC TEC MGP_C3HHeJ_T0010418.1 MGP_C3HHeJ_G0008551.1 mouse_genomes_project 3 25949266 25949340 + Mir466q miRNA miRNA MGP_C3HHeJ_T0011433.1 MGP_C3HHeJ_G0009566.1 mouse_genomes_project 3 6691221 6691530 + Gm22604 misc_RNA misc_RNA MGP_C3HHeJ_T0061815.1 MGP_C3HHeJ_G0027240.1 mouse_genomes_project 3 92888328 92889811 - MGP_C3HHeJ_P0061815 Crct1 protein_coding protein_coding MGP_C3HHeJ_T0061816.1 MGP_C3HHeJ_G0027240.1 mouse_genomes_project 3 92888642 92889793 - MGP_C3HHeJ_P0061816 Crct1 protein_coding protein_coding MGP_C3HHeJ_T0099267.1 MGP_C3HHeJ_G0037461.1 mouse_genomes_project 3 85320192 85320299 - Gm26204 snRNA snRNA MGP_C3HHeJ_T0101944.1 MGP_C3HHeJ_G0039909.1 mouse_genomes_project 3 58058068 58083878 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007639.1 MGP_C3HHeJ_G0006244.1 mouse_genomes_project 3 139767242 139776021 - Gm31678 lincRNA lincRNA MGP_C3HHeJ_T0062768.1 MGP_C3HHeJ_G0027458.1 mouse_genomes_project 3 108848682 108866150 + MGP_C3HHeJ_P0062768 Eps8l3 protein_coding protein_coding MGP_C3HHeJ_T0062769.1 MGP_C3HHeJ_G0027458.1 mouse_genomes_project 3 108848697 108852707 + Eps8l3 protein_coding processed_transcript MGP_C3HHeJ_T0062770.1 MGP_C3HHeJ_G0027458.1 mouse_genomes_project 3 108848715 108853083 + MGP_C3HHeJ_P0062770 Eps8l3 protein_coding protein_coding MGP_C3HHeJ_T0013910.1 MGP_C3HHeJ_G0012014.1 mouse_genomes_project 3 56819829 56820246 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063937.1 MGP_C3HHeJ_G0027685.1 mouse_genomes_project 3 154326839 154330979 - MGP_C3HHeJ_P0063937 Ifi44l protein_coding protein_coding MGP_C3HHeJ_T0099293.1 MGP_C3HHeJ_G0037487.1 mouse_genomes_project 3 103686675 103686840 - Gm22826 snRNA snRNA MGP_C3HHeJ_T0100525.1 MGP_C3HHeJ_G0038719.1 mouse_genomes_project 3 24580640 24580754 + Gm25152 snoRNA snoRNA MGP_C3HHeJ_T0063869.1 MGP_C3HHeJ_G0027674.1 mouse_genomes_project 3 148857999 148863765 + MGP_C3HHeJ_P0063869 Gng5 protein_coding protein_coding MGP_C3HHeJ_T0063870.1 MGP_C3HHeJ_G0027674.1 mouse_genomes_project 3 148858082 148863740 + MGP_C3HHeJ_P0063870 Gng5 protein_coding protein_coding MGP_C3HHeJ_T0063871.1 MGP_C3HHeJ_G0027674.1 mouse_genomes_project 3 148858301 148863741 + MGP_C3HHeJ_P0063871 Gng5 protein_coding protein_coding MGP_C3HHeJ_T0014115.1 MGP_C3HHeJ_G0012219.1 mouse_genomes_project 3 119262115 119262557 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013975.1 MGP_C3HHeJ_G0012079.1 mouse_genomes_project 3 77144207 77145620 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063111.1 MGP_C3HHeJ_G0027529.1 mouse_genomes_project 3 122693290 122787405 - MGP_C3HHeJ_P0063111 Tmem56 protein_coding protein_coding MGP_C3HHeJ_T0063112.1 MGP_C3HHeJ_G0027529.1 mouse_genomes_project 3 122693537 122730153 - MGP_C3HHeJ_P0063112 Tmem56 protein_coding unknown_likely_coding MGP_C3HHeJ_T0063113.1 MGP_C3HHeJ_G0027529.1 mouse_genomes_project 3 122693537 122756887 - MGP_C3HHeJ_P0063113 Tmem56 protein_coding protein_coding MGP_C3HHeJ_T0063114.1 MGP_C3HHeJ_G0027529.1 mouse_genomes_project 3 122693537 122756861 - MGP_C3HHeJ_P0063114 Tmem56 protein_coding protein_coding MGP_C3HHeJ_T0063115.1 MGP_C3HHeJ_G0027529.1 mouse_genomes_project 3 122697567 122746402 - MGP_C3HHeJ_P0063115 Tmem56 protein_coding protein_coding MGP_C3HHeJ_T0063116.1 MGP_C3HHeJ_G0027529.1 mouse_genomes_project 3 122721103 122787405 - MGP_C3HHeJ_P0063116 Tmem56 protein_coding protein_coding MGP_C3HHeJ_T0063117.1 MGP_C3HHeJ_G0027529.1 mouse_genomes_project 3 122721147 122724303 - Tmem56 protein_coding retained_intron MGP_C3HHeJ_T0063118.1 MGP_C3HHeJ_G0027529.1 mouse_genomes_project 3 122728451 122787302 - Tmem56 protein_coding processed_transcript MGP_C3HHeJ_T0063119.1 MGP_C3HHeJ_G0027529.1 mouse_genomes_project 3 122728504 122787309 - Tmem56 protein_coding processed_transcript MGP_C3HHeJ_T0059765.1 MGP_C3HHeJ_G0026801.1 mouse_genomes_project 3 15349214 15528873 - MGP_C3HHeJ_P0059765 Cyp7b1 protein_coding protein_coding MGP_C3HHeJ_T0014220.1 MGP_C3HHeJ_G0012324.1 mouse_genomes_project 3 160685763 160686173 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014105.1 MGP_C3HHeJ_G0012209.1 mouse_genomes_project 3 116408957 116409378 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013829.1 MGP_C3HHeJ_G0011933.1 mouse_genomes_project 3 31919989 31920884 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014180.1 MGP_C3HHeJ_G0012284.1 mouse_genomes_project 3 140615419 140616736 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007498.1 MGP_C3HHeJ_G0006133.1 mouse_genomes_project 3 78778293 78783110 + 4930589L23Rik lincRNA lincRNA MGP_C3HHeJ_T0007358.1 MGP_C3HHeJ_G0006030.1 mouse_genomes_project 3 2223996 2228497 + Gm17308 lincRNA lincRNA MGP_C3HHeJ_T0063755.1 MGP_C3HHeJ_G0027648.1 mouse_genomes_project 3 146357802 146372047 - MGP_C3HHeJ_P0063755 Lmo4 protein_coding protein_coding MGP_C3HHeJ_T0063756.1 MGP_C3HHeJ_G0027648.1 mouse_genomes_project 3 146357802 146374812 - MGP_C3HHeJ_P0063756 Lmo4 protein_coding protein_coding MGP_C3HHeJ_T0063757.1 MGP_C3HHeJ_G0027648.1 mouse_genomes_project 3 146357807 146374812 - MGP_C3HHeJ_P0063757 Lmo4 protein_coding protein_coding MGP_C3HHeJ_T0063758.1 MGP_C3HHeJ_G0027648.1 mouse_genomes_project 3 146357904 146371983 - MGP_C3HHeJ_P0063758 Lmo4 protein_coding protein_coding MGP_C3HHeJ_T0063759.1 MGP_C3HHeJ_G0027648.1 mouse_genomes_project 3 146358334 146364091 - Lmo4 protein_coding retained_intron MGP_C3HHeJ_T0063760.1 MGP_C3HHeJ_G0027648.1 mouse_genomes_project 3 146363260 146372567 - MGP_C3HHeJ_P0063760 Lmo4 protein_coding protein_coding MGP_C3HHeJ_T0063761.1 MGP_C3HHeJ_G0027648.1 mouse_genomes_project 3 146370433 146374772 - Lmo4 protein_coding retained_intron MGP_C3HHeJ_T0063762.1 MGP_C3HHeJ_G0027648.1 mouse_genomes_project 3 146371273 146371951 - Lmo4 protein_coding retained_intron MGP_C3HHeJ_T0061068.1 MGP_C3HHeJ_G0027071.1 mouse_genomes_project 3 85637779 86203375 + MGP_C3HHeJ_P0061068 Lrba protein_coding protein_coding MGP_C3HHeJ_T0061069.1 MGP_C3HHeJ_G0027071.1 mouse_genomes_project 3 85637779 86197610 + MGP_C3HHeJ_P0061069 Lrba protein_coding protein_coding MGP_C3HHeJ_T0061070.1 MGP_C3HHeJ_G0027071.1 mouse_genomes_project 3 85637779 86166902 + MGP_C3HHeJ_P0061070 Lrba protein_coding protein_coding MGP_C3HHeJ_T0061071.1 MGP_C3HHeJ_G0027071.1 mouse_genomes_project 3 85766809 85768192 + Lrba protein_coding retained_intron MGP_C3HHeJ_T0061072.1 MGP_C3HHeJ_G0027071.1 mouse_genomes_project 3 85957336 86027151 + Lrba protein_coding retained_intron MGP_C3HHeJ_T0061075.1 MGP_C3HHeJ_G0027071.1 mouse_genomes_project 3 85962947 86041377 + Lrba protein_coding retained_intron MGP_C3HHeJ_T0061076.1 MGP_C3HHeJ_G0027071.1 mouse_genomes_project 3 85964409 86203378 + MGP_C3HHeJ_P0061076 Lrba protein_coding protein_coding MGP_C3HHeJ_T0010414.1 MGP_C3HHeJ_G0008547.1 mouse_genomes_project 3 17558481 17558551 - Mir7007 miRNA miRNA MGP_C3HHeJ_T0013991.1 MGP_C3HHeJ_G0012095.1 mouse_genomes_project 3 83901100 83901685 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013835.1 MGP_C3HHeJ_G0011939.1 mouse_genomes_project 3 34214665 34215163 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101947.1 MGP_C3HHeJ_G0039912.1 mouse_genomes_project 3 62837149 62861341 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001250.1 MGP_C3HHeJ_G0001182.1 mouse_genomes_project 3 109284883 109292384 + TEC TEC MGP_C3HHeJ_T0010434.1 MGP_C3HHeJ_G0008567.1 mouse_genomes_project 3 67853929 67854024 + Mir16-2 miRNA miRNA MGP_C3HHeJ_T0063079.1 MGP_C3HHeJ_G0027525.1 mouse_genomes_project 3 119149528 119242041 - MGP_C3HHeJ_P0063079 Snx7 protein_coding protein_coding MGP_C3HHeJ_T0063080.1 MGP_C3HHeJ_G0027525.1 mouse_genomes_project 3 119149833 119216126 - MGP_C3HHeJ_P0063080 Snx7 protein_coding protein_coding MGP_C3HHeJ_T0063081.1 MGP_C3HHeJ_G0027525.1 mouse_genomes_project 3 119149959 119241957 - MGP_C3HHeJ_P0063081 Snx7 protein_coding protein_coding MGP_C3HHeJ_T0063082.1 MGP_C3HHeJ_G0027525.1 mouse_genomes_project 3 119195565 119199758 - Snx7 protein_coding retained_intron MGP_C3HHeJ_T0061077.1 MGP_C3HHeJ_G0027073.1 mouse_genomes_project 3 86206836 86347393 - MGP_C3HHeJ_P0061077 Dclk2 protein_coding protein_coding MGP_C3HHeJ_T0061078.1 MGP_C3HHeJ_G0027073.1 mouse_genomes_project 3 86206838 86347866 - MGP_C3HHeJ_P0061078 Dclk2 protein_coding protein_coding MGP_C3HHeJ_T0061079.1 MGP_C3HHeJ_G0027073.1 mouse_genomes_project 3 86206838 86347202 - MGP_C3HHeJ_P0061079 Dclk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061080.1 MGP_C3HHeJ_G0027073.1 mouse_genomes_project 3 86206844 86347349 - MGP_C3HHeJ_P0061080 Dclk2 protein_coding protein_coding MGP_C3HHeJ_T0061081.1 MGP_C3HHeJ_G0027073.1 mouse_genomes_project 3 86208535 86347184 - MGP_C3HHeJ_P0061081 Dclk2 protein_coding protein_coding MGP_C3HHeJ_T0061082.1 MGP_C3HHeJ_G0027073.1 mouse_genomes_project 3 86208564 86213639 - Dclk2 protein_coding processed_transcript MGP_C3HHeJ_T0061083.1 MGP_C3HHeJ_G0027073.1 mouse_genomes_project 3 86208672 86220484 - Dclk2 protein_coding processed_transcript MGP_C3HHeJ_T0061084.1 MGP_C3HHeJ_G0027073.1 mouse_genomes_project 3 86210669 86219336 - Dclk2 protein_coding processed_transcript MGP_C3HHeJ_T0061085.1 MGP_C3HHeJ_G0027073.1 mouse_genomes_project 3 86220244 86347388 - MGP_C3HHeJ_P0061085 Dclk2 protein_coding protein_coding MGP_C3HHeJ_T0100589.1 MGP_C3HHeJ_G0038783.1 mouse_genomes_project 3 156352848 156352964 + Gm22206 snoRNA snoRNA MGP_C3HHeJ_T0099272.1 MGP_C3HHeJ_G0037466.1 mouse_genomes_project 3 85801762 85801869 + Gm25039 snRNA snRNA MGP_C3HHeJ_T0060544.1 MGP_C3HHeJ_G0026943.1 mouse_genomes_project 3 55649277 55669626 - MGP_C3HHeJ_P0060544 Tm4sf1 protein_coding protein_coding MGP_C3HHeJ_T0060545.1 MGP_C3HHeJ_G0026943.1 mouse_genomes_project 3 55649277 55658556 - MGP_C3HHeJ_P0060545 Tm4sf1 protein_coding protein_coding MGP_C3HHeJ_T0060546.1 MGP_C3HHeJ_G0026943.1 mouse_genomes_project 3 55651150 55669678 - MGP_C3HHeJ_P0060546 Tm4sf1 protein_coding protein_coding MGP_C3HHeJ_T0060547.1 MGP_C3HHeJ_G0026943.1 mouse_genomes_project 3 55651182 55658219 - Tm4sf1 protein_coding processed_transcript MGP_C3HHeJ_T0060548.1 MGP_C3HHeJ_G0026943.1 mouse_genomes_project 3 55656449 55658792 - MGP_C3HHeJ_P0060548 Tm4sf1 protein_coding protein_coding MGP_C3HHeJ_T0060549.1 MGP_C3HHeJ_G0026943.1 mouse_genomes_project 3 55656485 55657370 - Tm4sf1 protein_coding retained_intron MGP_C3HHeJ_T0061655.1 MGP_C3HHeJ_G0027170.1 mouse_genomes_project 3 89808822 89809602 - MGP_C3HHeJ_P0061655 protein_coding protein_coding MGP_C3HHeJ_T0061656.1 MGP_C3HHeJ_G0027170.1 mouse_genomes_project 3 89808963 89809916 - MGP_C3HHeJ_P0061656 protein_coding protein_coding MGP_C3HHeJ_T0061657.1 MGP_C3HHeJ_G0027170.1 mouse_genomes_project 3 89808967 89809934 - protein_coding retained_intron MGP_C3HHeJ_T0061658.1 MGP_C3HHeJ_G0027170.1 mouse_genomes_project 3 89808967 89809935 - protein_coding retained_intron MGP_C3HHeJ_T0061659.1 MGP_C3HHeJ_G0027170.1 mouse_genomes_project 3 89808971 89809924 - protein_coding retained_intron MGP_C3HHeJ_T0061660.1 MGP_C3HHeJ_G0027170.1 mouse_genomes_project 3 89808971 89809949 - MGP_C3HHeJ_P0061660 protein_coding protein_coding MGP_C3HHeJ_T0061661.1 MGP_C3HHeJ_G0027170.1 mouse_genomes_project 3 89809127 89809947 - protein_coding retained_intron MGP_C3HHeJ_T0061662.1 MGP_C3HHeJ_G0027170.1 mouse_genomes_project 3 89809359 89809946 - protein_coding retained_intron MGP_C3HHeJ_T0062588.1 MGP_C3HHeJ_G0027409.1 mouse_genomes_project 3 105474765 105496258 + MGP_C3HHeJ_P0062588 Slc16a1 protein_coding protein_coding MGP_C3HHeJ_T0001359.1 MGP_C3HHeJ_G0001290.1 mouse_genomes_project 3 159753799 159756974 + TEC TEC MGP_C3HHeJ_T0099305.1 MGP_C3HHeJ_G0037499.1 mouse_genomes_project 3 125968735 125968845 + Gm22575 snRNA snRNA MGP_C3HHeJ_T0101962.1 MGP_C3HHeJ_G0039927.1 mouse_genomes_project 3 90653090 90660333 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004292.1 MGP_C3HHeJ_G0003745.1 mouse_genomes_project 3 128049525 128055927 - Gm17225 antisense antisense MGP_C3HHeJ_T0013945.1 MGP_C3HHeJ_G0012049.1 mouse_genomes_project 3 67699493 67700706 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060005.1 MGP_C3HHeJ_G0026846.1 mouse_genomes_project 3 28748320 28771208 + MGP_C3HHeJ_P0060005 Cldn11 protein_coding protein_coding MGP_C3HHeJ_T0062798.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109059174 109070668 - Ampd2 protein_coding retained_intron MGP_C3HHeJ_T0062799.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109059174 109071740 - MGP_C3HHeJ_P0062799 Ampd2 protein_coding protein_coding MGP_C3HHeJ_T0062800.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109059176 109071764 - MGP_C3HHeJ_P0062800 Ampd2 protein_coding protein_coding MGP_C3HHeJ_T0062801.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109059199 109070512 - MGP_C3HHeJ_P0062801 Ampd2 protein_coding protein_coding MGP_C3HHeJ_T0062802.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109059856 109060583 - Ampd2 protein_coding retained_intron MGP_C3HHeJ_T0062803.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109060476 109061545 - Ampd2 protein_coding retained_intron MGP_C3HHeJ_T0062804.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109061725 109063008 - Ampd2 protein_coding retained_intron MGP_C3HHeJ_T0062805.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109063580 109064822 - Ampd2 protein_coding retained_intron MGP_C3HHeJ_T0062806.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109063744 109065731 - Ampd2 protein_coding retained_intron MGP_C3HHeJ_T0062807.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109065034 109070508 - Ampd2 protein_coding retained_intron MGP_C3HHeJ_T0010420.1 MGP_C3HHeJ_G0008553.1 mouse_genomes_project 3 27210360 27210468 + Mir21b miRNA miRNA MGP_C3HHeJ_T0001131.1 MGP_C3HHeJ_G0001065.1 mouse_genomes_project 3 39549009 39550694 - TEC TEC MGP_C3HHeJ_T0014195.1 MGP_C3HHeJ_G0012299.1 mouse_genomes_project 3 146028559 146029384 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063256.1 MGP_C3HHeJ_G0027557.1 mouse_genomes_project 3 127460242 127533694 - MGP_C3HHeJ_P0063256 Ugt8a protein_coding protein_coding MGP_C3HHeJ_T0063257.1 MGP_C3HHeJ_G0027557.1 mouse_genomes_project 3 127460477 127509983 - MGP_C3HHeJ_P0063257 Ugt8a protein_coding protein_coding MGP_C3HHeJ_T0063258.1 MGP_C3HHeJ_G0027557.1 mouse_genomes_project 3 127508363 127533626 - Ugt8a protein_coding retained_intron MGP_C3HHeJ_T0060671.1 MGP_C3HHeJ_G0026976.1 mouse_genomes_project 3 61064909 61149279 - MGP_C3HHeJ_P0060671 Gpr149 protein_coding protein_coding MGP_C3HHeJ_T0060672.1 MGP_C3HHeJ_G0026976.1 mouse_genomes_project 3 61134521 61144577 - Gpr149 protein_coding retained_intron MGP_C3HHeJ_T0059795.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17273878 17326797 + MGP_C3HHeJ_P0059795 Cp protein_coding protein_coding MGP_C3HHeJ_T0059796.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17273878 17311363 + MGP_C3HHeJ_P0059796 Cp protein_coding protein_coding MGP_C3HHeJ_T0059797.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17273885 17286569 + Cp protein_coding retained_intron MGP_C3HHeJ_T0059798.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17273893 17328338 + MGP_C3HHeJ_P0059798 Cp protein_coding protein_coding MGP_C3HHeJ_T0059799.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17273935 17326797 + MGP_C3HHeJ_P0059799 Cp protein_coding protein_coding MGP_C3HHeJ_T0059800.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17274043 17286237 + Cp protein_coding retained_intron MGP_C3HHeJ_T0059801.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17274108 17310750 + MGP_C3HHeJ_P0059801 Cp protein_coding protein_coding MGP_C3HHeJ_T0059802.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17287073 17306276 + Cp protein_coding retained_intron MGP_C3HHeJ_T0059803.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17288116 17292285 + Cp protein_coding retained_intron MGP_C3HHeJ_T0059804.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17291991 17297952 + Cp protein_coding retained_intron MGP_C3HHeJ_T0059805.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17297838 17304607 + MGP_C3HHeJ_P0059805 Cp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059806.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17298638 17300698 + Cp protein_coding retained_intron MGP_C3HHeJ_T0059807.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17299213 17303114 + MGP_C3HHeJ_P0059807 Cp protein_coding protein_coding MGP_C3HHeJ_T0059808.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17302822 17310807 + MGP_C3HHeJ_P0059808 Cp protein_coding protein_coding MGP_C3HHeJ_T0059809.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17304755 17306838 + Cp protein_coding retained_intron MGP_C3HHeJ_T0059810.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17306362 17325546 + MGP_C3HHeJ_P0059810 Cp protein_coding protein_coding MGP_C3HHeJ_T0017773.1 MGP_C3HHeJ_G0015283.1 mouse_genomes_project 3 119840130 119843766 + Gm26871 processed_transcript lincRNA MGP_C3HHeJ_T0017774.1 MGP_C3HHeJ_G0015283.1 mouse_genomes_project 3 119843603 119933431 + Gm26871 processed_transcript lincRNA MGP_C3HHeJ_T0017775.1 MGP_C3HHeJ_G0015283.1 mouse_genomes_project 3 119843728 119935515 + Gm26871 processed_transcript lincRNA MGP_C3HHeJ_T0017776.1 MGP_C3HHeJ_G0015283.1 mouse_genomes_project 3 119843739 119891008 + Gm26871 processed_transcript lincRNA MGP_C3HHeJ_T0017777.1 MGP_C3HHeJ_G0015283.1 mouse_genomes_project 3 119843772 119949426 + Gm26871 processed_transcript lincRNA MGP_C3HHeJ_T0017778.1 MGP_C3HHeJ_G0015283.1 mouse_genomes_project 3 119875429 119878467 + Gm26871 processed_transcript retained_intron MGP_C3HHeJ_T0061594.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89576511 89580736 - MGP_C3HHeJ_P0061594 Hax1 protein_coding protein_coding MGP_C3HHeJ_T0061595.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89576511 89580767 - MGP_C3HHeJ_P0061595 Hax1 protein_coding protein_coding MGP_C3HHeJ_T0061596.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89576511 89580048 - MGP_C3HHeJ_P0061596 Hax1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0061597.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89576511 89580459 - MGP_C3HHeJ_P0061597 Hax1 protein_coding protein_coding MGP_C3HHeJ_T0061598.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89576511 89580690 - MGP_C3HHeJ_P0061598 Hax1 protein_coding protein_coding MGP_C3HHeJ_T0061599.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89576711 89580756 - Hax1 protein_coding retained_intron MGP_C3HHeJ_T0061600.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89576771 89578406 - Hax1 protein_coding retained_intron MGP_C3HHeJ_T0061601.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89577963 89580750 - MGP_C3HHeJ_P0061601 Hax1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061602.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89579589 89580850 - Hax1 protein_coding retained_intron MGP_C3HHeJ_T0061603.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89579839 89580432 - MGP_C3HHeJ_P0061603 Hax1 protein_coding protein_coding MGP_C3HHeJ_T0063694.1 MGP_C3HHeJ_G0027637.1 mouse_genomes_project 3 143531116 143909925 + MGP_C3HHeJ_P0063694 Unc5c protein_coding protein_coding MGP_C3HHeJ_T0063695.1 MGP_C3HHeJ_G0027637.1 mouse_genomes_project 3 143531474 143904472 + MGP_C3HHeJ_P0063695 Unc5c protein_coding protein_coding MGP_C3HHeJ_T0063696.1 MGP_C3HHeJ_G0027637.1 mouse_genomes_project 3 143531499 143734985 + Unc5c protein_coding processed_transcript MGP_C3HHeJ_T0063697.1 MGP_C3HHeJ_G0027637.1 mouse_genomes_project 3 143531499 143536839 + Unc5c protein_coding retained_intron MGP_C3HHeJ_T0063698.1 MGP_C3HHeJ_G0027637.1 mouse_genomes_project 3 143531499 143756854 + Unc5c protein_coding retained_intron MGP_C3HHeJ_T0063699.1 MGP_C3HHeJ_G0027637.1 mouse_genomes_project 3 143531499 143904424 + MGP_C3HHeJ_P0063699 Unc5c protein_coding protein_coding MGP_C3HHeJ_T0063700.1 MGP_C3HHeJ_G0027637.1 mouse_genomes_project 3 143531571 143905541 + MGP_C3HHeJ_P0063700 Unc5c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063701.1 MGP_C3HHeJ_G0027637.1 mouse_genomes_project 3 143864900 143867050 + Unc5c protein_coding retained_intron MGP_C3HHeJ_T0060553.1 MGP_C3HHeJ_G0026946.1 mouse_genomes_project 3 56017309 56026351 - MGP_C3HHeJ_P0060553 Commd2 protein_coding protein_coding MGP_C3HHeJ_T0060554.1 MGP_C3HHeJ_G0026946.1 mouse_genomes_project 3 56019319 56026344 - MGP_C3HHeJ_P0060554 Commd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060555.1 MGP_C3HHeJ_G0026946.1 mouse_genomes_project 3 56025737 56026351 - Commd2 protein_coding retained_intron MGP_C3HHeJ_T0014148.1 MGP_C3HHeJ_G0012252.1 mouse_genomes_project 3 132667589 132668101 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059683.1 MGP_C3HHeJ_G0026770.1 mouse_genomes_project 3 6713698 6902467 - MGP_C3HHeJ_P0059683 Zfp704 protein_coding protein_coding MGP_C3HHeJ_T0059684.1 MGP_C3HHeJ_G0026770.1 mouse_genomes_project 3 6725010 6856865 - MGP_C3HHeJ_P0059684 Zfp704 protein_coding protein_coding MGP_C3HHeJ_T0059685.1 MGP_C3HHeJ_G0026770.1 mouse_genomes_project 3 6725418 6727759 - Zfp704 protein_coding retained_intron MGP_C3HHeJ_T0007593.1 MGP_C3HHeJ_G0006208.1 mouse_genomes_project 3 122106338 122377213 - lincRNA lincRNA MGP_C3HHeJ_T0007594.1 MGP_C3HHeJ_G0006208.1 mouse_genomes_project 3 122194770 122377212 - lincRNA lincRNA MGP_C3HHeJ_T0007595.1 MGP_C3HHeJ_G0006208.1 mouse_genomes_project 3 122198543 122377194 - lincRNA lincRNA MGP_C3HHeJ_T0007596.1 MGP_C3HHeJ_G0006208.1 mouse_genomes_project 3 122271227 122377171 - lincRNA lincRNA MGP_C3HHeJ_T0007381.1 MGP_C3HHeJ_G0006046.1 mouse_genomes_project 3 15065379 15076607 + Mir124-2hg lincRNA lincRNA MGP_C3HHeJ_T0007382.1 MGP_C3HHeJ_G0006046.1 mouse_genomes_project 3 15065415 15076256 + Mir124-2hg lincRNA lincRNA MGP_C3HHeJ_T0007383.1 MGP_C3HHeJ_G0006046.1 mouse_genomes_project 3 15069370 15070856 + Mir124-2hg lincRNA lincRNA MGP_C3HHeJ_T0007384.1 MGP_C3HHeJ_G0006046.1 mouse_genomes_project 3 15069378 15076312 + Mir124-2hg lincRNA lincRNA MGP_C3HHeJ_T0007385.1 MGP_C3HHeJ_G0006046.1 mouse_genomes_project 3 15069395 15076225 + Mir124-2hg lincRNA lincRNA MGP_C3HHeJ_T0007386.1 MGP_C3HHeJ_G0006046.1 mouse_genomes_project 3 15070346 15086241 + Mir124-2hg lincRNA lincRNA MGP_C3HHeJ_T0007387.1 MGP_C3HHeJ_G0006046.1 mouse_genomes_project 3 15071194 15076312 + Mir124-2hg lincRNA lincRNA MGP_C3HHeJ_T0001249.1 MGP_C3HHeJ_G0001181.1 mouse_genomes_project 3 108857377 108859260 + TEC TEC MGP_C3HHeJ_T0013862.1 MGP_C3HHeJ_G0011966.1 mouse_genomes_project 3 41328205 41329369 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063232.1 MGP_C3HHeJ_G0027552.1 mouse_genomes_project 3 125121467 125268138 - MGP_C3HHeJ_P0063232 Ndst3 protein_coding protein_coding MGP_C3HHeJ_T0063233.1 MGP_C3HHeJ_G0027552.1 mouse_genomes_project 3 125121473 125284280 - MGP_C3HHeJ_P0063233 Ndst3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063234.1 MGP_C3HHeJ_G0027552.1 mouse_genomes_project 3 125121475 125284280 - MGP_C3HHeJ_P0063234 Ndst3 protein_coding protein_coding MGP_C3HHeJ_T0063235.1 MGP_C3HHeJ_G0027552.1 mouse_genomes_project 3 125121476 125268222 - MGP_C3HHeJ_P0063235 Ndst3 protein_coding protein_coding MGP_C3HHeJ_T0063236.1 MGP_C3HHeJ_G0027552.1 mouse_genomes_project 3 125123865 125214540 - MGP_C3HHeJ_P0063236 Ndst3 protein_coding protein_coding MGP_C3HHeJ_T0063237.1 MGP_C3HHeJ_G0027552.1 mouse_genomes_project 3 125123994 125283708 - MGP_C3HHeJ_P0063237 Ndst3 protein_coding protein_coding MGP_C3HHeJ_T0063238.1 MGP_C3HHeJ_G0027552.1 mouse_genomes_project 3 125148321 125268407 - Ndst3 protein_coding retained_intron MGP_C3HHeJ_T0063239.1 MGP_C3HHeJ_G0027552.1 mouse_genomes_project 3 125152156 125155616 - Ndst3 protein_coding retained_intron MGP_C3HHeJ_T0063240.1 MGP_C3HHeJ_G0027552.1 mouse_genomes_project 3 125152327 125170214 - Ndst3 protein_coding processed_transcript MGP_C3HHeJ_T0014065.1 MGP_C3HHeJ_G0012169.1 mouse_genomes_project 3 103997134 103997423 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062139.1 MGP_C3HHeJ_G0027302.1 mouse_genomes_project 3 96121524 96129572 - MGP_C3HHeJ_P0062139 BC028528 protein_coding protein_coding MGP_C3HHeJ_T0062140.1 MGP_C3HHeJ_G0027302.1 mouse_genomes_project 3 96121528 96129522 - MGP_C3HHeJ_P0062140 BC028528 protein_coding protein_coding MGP_C3HHeJ_T0062141.1 MGP_C3HHeJ_G0027302.1 mouse_genomes_project 3 96122541 96129497 - MGP_C3HHeJ_P0062141 BC028528 protein_coding protein_coding MGP_C3HHeJ_T0062142.1 MGP_C3HHeJ_G0027302.1 mouse_genomes_project 3 96125525 96129518 - BC028528 protein_coding processed_transcript MGP_C3HHeJ_T0062143.1 MGP_C3HHeJ_G0027302.1 mouse_genomes_project 3 96126012 96129548 - BC028528 protein_coding retained_intron MGP_C3HHeJ_T0013851.1 MGP_C3HHeJ_G0011955.1 mouse_genomes_project 3 36451804 36452339 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001284.1 MGP_C3HHeJ_G0001216.1 mouse_genomes_project 3 128227424 128231929 + TEC TEC MGP_C3HHeJ_T0060310.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39451420 39517104 + MGP_C3HHeJ_P0060310 Jade1 protein_coding protein_coding MGP_C3HHeJ_T0060311.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39451430 39493248 + MGP_C3HHeJ_P0060311 Jade1 protein_coding protein_coding MGP_C3HHeJ_T0060312.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39451449 39496087 + MGP_C3HHeJ_P0060312 Jade1 protein_coding protein_coding MGP_C3HHeJ_T0060313.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39462266 39517099 + MGP_C3HHeJ_P0060313 Jade1 protein_coding protein_coding MGP_C3HHeJ_T0060314.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39462308 39491201 + Jade1 protein_coding processed_transcript MGP_C3HHeJ_T0060315.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39462504 39514299 + MGP_C3HHeJ_P0060315 Jade1 protein_coding protein_coding MGP_C3HHeJ_T0060316.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39464504 39516352 + MGP_C3HHeJ_P0060316 Jade1 protein_coding protein_coding MGP_C3HHeJ_T0060317.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39464548 39491199 + Jade1 protein_coding processed_transcript MGP_C3HHeJ_T0060318.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39464570 39506936 + MGP_C3HHeJ_P0060318 Jade1 protein_coding protein_coding MGP_C3HHeJ_T0060319.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39491139 39499638 + Jade1 protein_coding retained_intron MGP_C3HHeJ_T0060320.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39493239 39504805 + Jade1 protein_coding retained_intron MGP_C3HHeJ_T0060321.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39496133 39505041 + MGP_C3HHeJ_P0060321 Jade1 protein_coding protein_coding MGP_C3HHeJ_T0060322.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39502670 39505048 + Jade1 protein_coding processed_transcript MGP_C3HHeJ_T0060388.1 MGP_C3HHeJ_G0026912.1 mouse_genomes_project 3 49616487 49676901 + Naa15 protein_coding processed_transcript MGP_C3HHeJ_T0060389.1 MGP_C3HHeJ_G0026912.1 mouse_genomes_project 3 49616514 49682688 + MGP_C3HHeJ_P0060389 Naa15 protein_coding protein_coding MGP_C3HHeJ_T0060390.1 MGP_C3HHeJ_G0026912.1 mouse_genomes_project 3 49616805 49648219 + MGP_C3HHeJ_P0060390 Naa15 protein_coding protein_coding MGP_C3HHeJ_T0060391.1 MGP_C3HHeJ_G0026912.1 mouse_genomes_project 3 49646094 49649247 + Naa15 protein_coding retained_intron MGP_C3HHeJ_T0060392.1 MGP_C3HHeJ_G0026912.1 mouse_genomes_project 3 49647083 49653904 + MGP_C3HHeJ_P0060392 Naa15 protein_coding protein_coding MGP_C3HHeJ_T0060393.1 MGP_C3HHeJ_G0026912.1 mouse_genomes_project 3 49665081 49668653 + Naa15 protein_coding retained_intron MGP_C3HHeJ_T0060394.1 MGP_C3HHeJ_G0026912.1 mouse_genomes_project 3 49666070 49668389 + Naa15 protein_coding retained_intron MGP_C3HHeJ_T0060395.1 MGP_C3HHeJ_G0026912.1 mouse_genomes_project 3 49674476 49677549 + Naa15 protein_coding retained_intron MGP_C3HHeJ_T0001307.1 MGP_C3HHeJ_G0001238.1 mouse_genomes_project 3 130973036 130975621 - TEC TEC MGP_C3HHeJ_T0004210.1 MGP_C3HHeJ_G0003694.1 mouse_genomes_project 3 89484364 89485502 + Gm42809 antisense antisense MGP_C3HHeJ_T0061797.1 MGP_C3HHeJ_G0027222.1 mouse_genomes_project 3 92520233 92521570 - MGP_C3HHeJ_P0061797 Lce1b protein_coding protein_coding MGP_C3HHeJ_T0062401.1 MGP_C3HHeJ_G0027374.1 mouse_genomes_project 3 101685388 101761210 - MGP_C3HHeJ_P0062401 Ptgfrn protein_coding protein_coding MGP_C3HHeJ_T0062402.1 MGP_C3HHeJ_G0027374.1 mouse_genomes_project 3 101708017 101721640 - Ptgfrn protein_coding processed_transcript MGP_C3HHeJ_T0062403.1 MGP_C3HHeJ_G0027374.1 mouse_genomes_project 3 101722126 101726912 - Ptgfrn protein_coding retained_intron MGP_C3HHeJ_T0014184.1 MGP_C3HHeJ_G0012288.1 mouse_genomes_project 3 141449453 141449897 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001077.1 MGP_C3HHeJ_G0001011.1 mouse_genomes_project 3 6784660 6788427 + TEC TEC MGP_C3HHeJ_T0007441.1 MGP_C3HHeJ_G0006092.1 mouse_genomes_project 3 39367488 39371797 - Gm42434 lincRNA lincRNA MGP_C3HHeJ_T0007442.1 MGP_C3HHeJ_G0006092.1 mouse_genomes_project 3 39371672 39372303 - Gm42434 lincRNA lincRNA MGP_C3HHeJ_T0061211.1 MGP_C3HHeJ_G0027103.1 mouse_genomes_project 3 87818000 87834272 - MGP_C3HHeJ_P0061211 Tsacc protein_coding protein_coding MGP_C3HHeJ_T0061212.1 MGP_C3HHeJ_G0027103.1 mouse_genomes_project 3 87818003 87834111 - MGP_C3HHeJ_P0061212 Tsacc protein_coding protein_coding MGP_C3HHeJ_T0013976.1 MGP_C3HHeJ_G0012080.1 mouse_genomes_project 3 77190834 77191275 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013864.1 MGP_C3HHeJ_G0011968.1 mouse_genomes_project 3 41886240 41886583 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013786.1 MGP_C3HHeJ_G0011890.1 mouse_genomes_project 3 13351500 13351675 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062495.1 MGP_C3HHeJ_G0027392.1 mouse_genomes_project 3 103849337 103918067 + MGP_C3HHeJ_P0062495 Dennd2c protein_coding protein_coding MGP_C3HHeJ_T0062496.1 MGP_C3HHeJ_G0027392.1 mouse_genomes_project 3 103849393 103904787 + Dennd2c protein_coding retained_intron MGP_C3HHeJ_T0062497.1 MGP_C3HHeJ_G0027392.1 mouse_genomes_project 3 103874747 103918036 + MGP_C3HHeJ_P0062497 Dennd2c protein_coding protein_coding MGP_C3HHeJ_T0062498.1 MGP_C3HHeJ_G0027392.1 mouse_genomes_project 3 103888012 103916962 + Dennd2c protein_coding processed_transcript MGP_C3HHeJ_T0062499.1 MGP_C3HHeJ_G0027392.1 mouse_genomes_project 3 103888542 103918029 + Dennd2c protein_coding retained_intron MGP_C3HHeJ_T0062500.1 MGP_C3HHeJ_G0027392.1 mouse_genomes_project 3 103896678 103906840 + Dennd2c protein_coding retained_intron MGP_C3HHeJ_T0100528.1 MGP_C3HHeJ_G0038722.1 mouse_genomes_project 3 31682101 31682233 - Gm23175 snoRNA snoRNA MGP_C3HHeJ_T0064102.1 MGP_C3HHeJ_G0027708.1 mouse_genomes_project 3 157791439 157799920 - MGP_C3HHeJ_P0064102 Fpgt protein_coding protein_coding MGP_C3HHeJ_T0064103.1 MGP_C3HHeJ_G0027708.1 mouse_genomes_project 3 157794240 157799714 - Fpgt protein_coding processed_transcript MGP_C3HHeJ_T0064104.1 MGP_C3HHeJ_G0027708.1 mouse_genomes_project 3 157795549 157797041 - Fpgt protein_coding retained_intron MGP_C3HHeJ_T0064105.1 MGP_C3HHeJ_G0027708.1 mouse_genomes_project 3 157797464 157799885 - Fpgt protein_coding retained_intron MGP_C3HHeJ_T0064106.1 MGP_C3HHeJ_G0027708.1 mouse_genomes_project 3 157797841 157799072 - Fpgt protein_coding processed_transcript MGP_C3HHeJ_T0064107.1 MGP_C3HHeJ_G0027708.1 mouse_genomes_project 3 157797926 157799744 - Fpgt protein_coding processed_transcript MGP_C3HHeJ_T0013959.1 MGP_C3HHeJ_G0012063.1 mouse_genomes_project 3 70622696 70627282 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013935.1 MGP_C3HHeJ_G0012039.1 mouse_genomes_project 3 64958019 64958775 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010469.1 MGP_C3HHeJ_G0008602.1 mouse_genomes_project 3 129214264 129214339 + Mir367 miRNA miRNA MGP_C3HHeJ_T0001108.1 MGP_C3HHeJ_G0001042.1 mouse_genomes_project 3 31785616 31786701 - TEC TEC MGP_C3HHeJ_T0062149.1 MGP_C3HHeJ_G0027304.1 mouse_genomes_project 3 96135983 96142902 - MGP_C3HHeJ_P0062149 Car14 protein_coding protein_coding MGP_C3HHeJ_T0062150.1 MGP_C3HHeJ_G0027304.1 mouse_genomes_project 3 96137955 96142896 - MGP_C3HHeJ_P0062150 Car14 protein_coding protein_coding MGP_C3HHeJ_T0062151.1 MGP_C3HHeJ_G0027304.1 mouse_genomes_project 3 96139727 96142895 - Car14 protein_coding retained_intron MGP_C3HHeJ_T0062152.1 MGP_C3HHeJ_G0027304.1 mouse_genomes_project 3 96140108 96141959 - Car14 protein_coding retained_intron MGP_C3HHeJ_T0004135.1 MGP_C3HHeJ_G0003640.1 mouse_genomes_project 3 26349972 26357940 - Gm33051 antisense antisense MGP_C3HHeJ_T0061122.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87237618 87259430 - MGP_C3HHeJ_P0061122 Pear1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061123.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87238823 87259435 - MGP_C3HHeJ_P0061123 Pear1 protein_coding protein_coding MGP_C3HHeJ_T0061124.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87238823 87316782 - MGP_C3HHeJ_P0061124 Pear1 protein_coding protein_coding MGP_C3HHeJ_T0061125.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87238823 87316749 - MGP_C3HHeJ_P0061125 Pear1 protein_coding protein_coding MGP_C3HHeJ_T0061126.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87238824 87252707 - Pear1 protein_coding retained_intron MGP_C3HHeJ_T0061127.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87238824 87259425 - MGP_C3HHeJ_P0061127 Pear1 protein_coding protein_coding MGP_C3HHeJ_T0061128.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87238824 87259431 - MGP_C3HHeJ_P0061128 Pear1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061129.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87238832 87244039 - Pear1 protein_coding retained_intron MGP_C3HHeJ_T0061130.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87239626 87259425 - MGP_C3HHeJ_P0061130 Pear1 protein_coding protein_coding MGP_C3HHeJ_T0061131.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87241185 87243668 - MGP_C3HHeJ_P0061131 Pear1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061132.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87242166 87246660 - MGP_C3HHeJ_P0061132 Pear1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061133.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87246358 87259425 - MGP_C3HHeJ_P0061133 Pear1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061134.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87247677 87259437 - Pear1 protein_coding retained_intron MGP_C3HHeJ_T0061135.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87248117 87259425 - MGP_C3HHeJ_P0061135 Pear1 protein_coding protein_coding MGP_C3HHeJ_T0061136.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87248130 87259425 - MGP_C3HHeJ_P0061136 Pear1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061137.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87248144 87259448 - MGP_C3HHeJ_P0061137 Pear1 protein_coding protein_coding MGP_C3HHeJ_T0061138.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87249864 87259417 - MGP_C3HHeJ_P0061138 Pear1 protein_coding protein_coding MGP_C3HHeJ_T0017732.1 MGP_C3HHeJ_G0015266.1 mouse_genomes_project 3 49768370 49775455 + 5031434O11Rik processed_transcript antisense MGP_C3HHeJ_T0017733.1 MGP_C3HHeJ_G0015266.1 mouse_genomes_project 3 49770806 49775443 + 5031434O11Rik processed_transcript antisense MGP_C3HHeJ_T0017734.1 MGP_C3HHeJ_G0015266.1 mouse_genomes_project 3 49771978 49775449 + 5031434O11Rik processed_transcript retained_intron MGP_C3HHeJ_T0001219.1 MGP_C3HHeJ_G0001151.1 mouse_genomes_project 3 83397548 83402024 - TEC TEC MGP_C3HHeJ_T0063730.1 MGP_C3HHeJ_G0027644.1 mouse_genomes_project 3 144726391 144746165 + MGP_C3HHeJ_P0063730 Gbp2 protein_coding protein_coding MGP_C3HHeJ_T0063731.1 MGP_C3HHeJ_G0027644.1 mouse_genomes_project 3 144726424 144738743 + MGP_C3HHeJ_P0063731 Gbp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013896.1 MGP_C3HHeJ_G0012000.1 mouse_genomes_project 3 52957838 52959532 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004166.1 MGP_C3HHeJ_G0003663.1 mouse_genomes_project 3 51314720 51317891 - Gm42901 antisense antisense MGP_C3HHeJ_T0001318.1 MGP_C3HHeJ_G0001249.1 mouse_genomes_project 3 132977493 132979748 + TEC TEC MGP_C3HHeJ_T0014081.1 MGP_C3HHeJ_G0012185.1 mouse_genomes_project 3 108977722 108978125 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001338.1 MGP_C3HHeJ_G0001269.1 mouse_genomes_project 3 150877282 150878153 + TEC TEC MGP_C3HHeJ_T0063231.1 MGP_C3HHeJ_G0027551.1 mouse_genomes_project 3 125045347 125101219 + MGP_C3HHeJ_P0063231 Prss12 protein_coding protein_coding MGP_C3HHeJ_T0014149.1 MGP_C3HHeJ_G0012253.1 mouse_genomes_project 3 132756439 132757744 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013850.1 MGP_C3HHeJ_G0011954.1 mouse_genomes_project 3 36326950 36327783 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059822.1 MGP_C3HHeJ_G0026812.1 mouse_genomes_project 3 17377898 17453899 + MGP_C3HHeJ_P0059822 Hltf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059823.1 MGP_C3HHeJ_G0026812.1 mouse_genomes_project 3 17377898 17455108 + MGP_C3HHeJ_P0059823 Hltf protein_coding protein_coding MGP_C3HHeJ_T0059824.1 MGP_C3HHeJ_G0026812.1 mouse_genomes_project 3 17377907 17443404 + Hltf protein_coding retained_intron MGP_C3HHeJ_T0059825.1 MGP_C3HHeJ_G0026812.1 mouse_genomes_project 3 17377940 17387043 + Hltf protein_coding retained_intron MGP_C3HHeJ_T0059826.1 MGP_C3HHeJ_G0026812.1 mouse_genomes_project 3 17380798 17455094 + MGP_C3HHeJ_P0059826 Hltf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059827.1 MGP_C3HHeJ_G0026812.1 mouse_genomes_project 3 17443376 17455108 + Hltf protein_coding retained_intron MGP_C3HHeJ_T0014192.1 MGP_C3HHeJ_G0012296.1 mouse_genomes_project 3 144477285 144477423 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001179.1 MGP_C3HHeJ_G0001111.1 mouse_genomes_project 3 51790808 51791999 + TEC TEC MGP_C3HHeJ_T0007620.1 MGP_C3HHeJ_G0006226.1 mouse_genomes_project 3 132690374 132691917 + Gm36520 lincRNA lincRNA MGP_C3HHeJ_T0013893.1 MGP_C3HHeJ_G0011997.1 mouse_genomes_project 3 51960165 51960631 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004297.1 MGP_C3HHeJ_G0003749.1 mouse_genomes_project 3 131296000 131301557 - Gm35986 antisense antisense MGP_C3HHeJ_T0004298.1 MGP_C3HHeJ_G0003749.1 mouse_genomes_project 3 131296165 131301836 - Gm35986 antisense antisense MGP_C3HHeJ_T0099264.1 MGP_C3HHeJ_G0037458.1 mouse_genomes_project 3 71747629 71747780 - Gm22451 snRNA snRNA MGP_C3HHeJ_T0014147.1 MGP_C3HHeJ_G0012251.1 mouse_genomes_project 3 132573601 132573899 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100538.1 MGP_C3HHeJ_G0038732.1 mouse_genomes_project 3 54303854 54303986 - Gm22784 snoRNA snoRNA MGP_C3HHeJ_T0007378.1 MGP_C3HHeJ_G0006043.1 mouse_genomes_project 3 12385767 12410874 + A930001A20Rik lincRNA lincRNA MGP_C3HHeJ_T0063933.1 MGP_C3HHeJ_G0027684.1 mouse_genomes_project 3 154293428 154318342 - MGP_C3HHeJ_P0063933 Ifi44 protein_coding protein_coding MGP_C3HHeJ_T0063934.1 MGP_C3HHeJ_G0027684.1 mouse_genomes_project 3 154294932 154318264 - Ifi44 protein_coding processed_transcript MGP_C3HHeJ_T0063935.1 MGP_C3HHeJ_G0027684.1 mouse_genomes_project 3 154314072 154318329 - Ifi44 protein_coding retained_intron MGP_C3HHeJ_T0063936.1 MGP_C3HHeJ_G0027684.1 mouse_genomes_project 3 154314173 154318285 - Ifi44 protein_coding processed_transcript MGP_C3HHeJ_T0062693.1 MGP_C3HHeJ_G0027437.1 mouse_genomes_project 3 107470856 107499731 + MGP_C3HHeJ_P0062693 Dram2 protein_coding protein_coding MGP_C3HHeJ_T0062694.1 MGP_C3HHeJ_G0027437.1 mouse_genomes_project 3 107470885 107489634 + Dram2 protein_coding retained_intron MGP_C3HHeJ_T0062695.1 MGP_C3HHeJ_G0027437.1 mouse_genomes_project 3 107470889 107478333 + MGP_C3HHeJ_P0062695 Dram2 protein_coding protein_coding MGP_C3HHeJ_T0062696.1 MGP_C3HHeJ_G0027437.1 mouse_genomes_project 3 107470922 107498029 + MGP_C3HHeJ_P0062696 Dram2 protein_coding protein_coding MGP_C3HHeJ_T0062697.1 MGP_C3HHeJ_G0027437.1 mouse_genomes_project 3 107470928 107489475 + Dram2 protein_coding retained_intron MGP_C3HHeJ_T0062698.1 MGP_C3HHeJ_G0027437.1 mouse_genomes_project 3 107470930 107498029 + MGP_C3HHeJ_P0062698 Dram2 protein_coding protein_coding MGP_C3HHeJ_T0062699.1 MGP_C3HHeJ_G0027437.1 mouse_genomes_project 3 107470935 107478301 + MGP_C3HHeJ_P0062699 Dram2 protein_coding protein_coding MGP_C3HHeJ_T0062700.1 MGP_C3HHeJ_G0027437.1 mouse_genomes_project 3 107470935 107494077 + MGP_C3HHeJ_P0062700 Dram2 protein_coding protein_coding MGP_C3HHeJ_T0062701.1 MGP_C3HHeJ_G0027437.1 mouse_genomes_project 3 107470939 107494014 + MGP_C3HHeJ_P0062701 Dram2 protein_coding protein_coding MGP_C3HHeJ_T0061807.1 MGP_C3HHeJ_G0027232.1 mouse_genomes_project 3 92683521 92687737 - MGP_C3HHeJ_P0061807 Kprp protein_coding protein_coding MGP_C3HHeJ_T0101193.1 MGP_C3HHeJ_G0039334.1 mouse_genomes_project 3 94396937 94397634 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101194.1 MGP_C3HHeJ_G0039334.1 mouse_genomes_project 3 94397113 94397876 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0004222.1 MGP_C3HHeJ_G0003704.1 mouse_genomes_project 3 95482796 95490581 - 6330562C20Rik antisense antisense MGP_C3HHeJ_T0004223.1 MGP_C3HHeJ_G0003704.1 mouse_genomes_project 3 95483383 95490630 - 6330562C20Rik antisense antisense MGP_C3HHeJ_T0004224.1 MGP_C3HHeJ_G0003704.1 mouse_genomes_project 3 95486891 95490640 - 6330562C20Rik antisense antisense MGP_C3HHeJ_T0061851.1 MGP_C3HHeJ_G0027256.1 mouse_genomes_project 3 94506218 94508474 - protein_coding retained_intron MGP_C3HHeJ_T0061852.1 MGP_C3HHeJ_G0027256.1 mouse_genomes_project 3 94506975 94510425 - MGP_C3HHeJ_P0061852 protein_coding protein_coding MGP_C3HHeJ_T0061853.1 MGP_C3HHeJ_G0027256.1 mouse_genomes_project 3 94507196 94517654 - MGP_C3HHeJ_P0061853 protein_coding protein_coding MGP_C3HHeJ_T0061854.1 MGP_C3HHeJ_G0027256.1 mouse_genomes_project 3 94507196 94517572 - MGP_C3HHeJ_P0061854 protein_coding protein_coding MGP_C3HHeJ_T0061855.1 MGP_C3HHeJ_G0027256.1 mouse_genomes_project 3 94507196 94508923 - MGP_C3HHeJ_P0061855 protein_coding protein_coding MGP_C3HHeJ_T0061856.1 MGP_C3HHeJ_G0027256.1 mouse_genomes_project 3 94507196 94510376 - MGP_C3HHeJ_P0061856 protein_coding protein_coding MGP_C3HHeJ_T0061857.1 MGP_C3HHeJ_G0027256.1 mouse_genomes_project 3 94507196 94510446 - MGP_C3HHeJ_P0061857 protein_coding protein_coding MGP_C3HHeJ_T0061858.1 MGP_C3HHeJ_G0027256.1 mouse_genomes_project 3 94508921 94510572 - protein_coding retained_intron MGP_C3HHeJ_T0063510.1 MGP_C3HHeJ_G0027600.1 mouse_genomes_project 3 136074772 136097738 + Cxxc4 protein_coding processed_transcript MGP_C3HHeJ_T0063511.1 MGP_C3HHeJ_G0027600.1 mouse_genomes_project 3 136074779 136100279 + MGP_C3HHeJ_P0063511 Cxxc4 protein_coding protein_coding MGP_C3HHeJ_T0063512.1 MGP_C3HHeJ_G0027600.1 mouse_genomes_project 3 136074783 136076674 + Cxxc4 protein_coding retained_intron MGP_C3HHeJ_T0063513.1 MGP_C3HHeJ_G0027600.1 mouse_genomes_project 3 136075108 136096349 + MGP_C3HHeJ_P0063513 Cxxc4 protein_coding protein_coding MGP_C3HHeJ_T0063514.1 MGP_C3HHeJ_G0027600.1 mouse_genomes_project 3 136078782 136085110 + Cxxc4 protein_coding retained_intron MGP_C3HHeJ_T0061771.1 MGP_C3HHeJ_G0027199.1 mouse_genomes_project 3 91850721 91864521 + MGP_C3HHeJ_P0061771 Pglyrp3 protein_coding protein_coding MGP_C3HHeJ_T0063543.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137334388 137361479 + MGP_C3HHeJ_P0063543 Ube2d3 protein_coding protein_coding MGP_C3HHeJ_T0063544.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137334555 137361528 + MGP_C3HHeJ_P0063544 Ube2d3 protein_coding protein_coding MGP_C3HHeJ_T0063545.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137334768 137337837 + Ube2d3 protein_coding processed_transcript MGP_C3HHeJ_T0063546.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137334772 137356235 + MGP_C3HHeJ_P0063546 Ube2d3 protein_coding protein_coding MGP_C3HHeJ_T0063547.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137334782 137359281 + MGP_C3HHeJ_P0063547 Ube2d3 protein_coding protein_coding MGP_C3HHeJ_T0063548.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137334804 137364669 + MGP_C3HHeJ_P0063548 Ube2d3 protein_coding protein_coding MGP_C3HHeJ_T0063549.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137334986 137351489 + MGP_C3HHeJ_P0063549 Ube2d3 protein_coding protein_coding MGP_C3HHeJ_T0063550.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137334993 137361539 + MGP_C3HHeJ_P0063550 Ube2d3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063551.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137335103 137354403 + Ube2d3 protein_coding retained_intron MGP_C3HHeJ_T0063552.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137350865 137356279 + Ube2d3 protein_coding retained_intron MGP_C3HHeJ_T0063553.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137354887 137356926 + Ube2d3 protein_coding retained_intron MGP_C3HHeJ_T0014122.1 MGP_C3HHeJ_G0012226.1 mouse_genomes_project 3 123348001 123348407 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014113.1 MGP_C3HHeJ_G0012217.1 mouse_genomes_project 3 118527942 118528585 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060694.1 MGP_C3HHeJ_G0026979.1 mouse_genomes_project 3 62527641 62544868 - MGP_C3HHeJ_P0060694 E130311K13Rik protein_coding protein_coding MGP_C3HHeJ_T0060695.1 MGP_C3HHeJ_G0026979.1 mouse_genomes_project 3 62538961 62544787 - E130311K13Rik protein_coding processed_transcript MGP_C3HHeJ_T0060696.1 MGP_C3HHeJ_G0026979.1 mouse_genomes_project 3 62542228 62544787 - E130311K13Rik protein_coding retained_intron MGP_C3HHeJ_T0061781.1 MGP_C3HHeJ_G0027208.1 mouse_genomes_project 3 92259950 92261231 + MGP_C3HHeJ_P0061781 Sprr2i protein_coding protein_coding MGP_C3HHeJ_T0060589.1 MGP_C3HHeJ_G0026954.1 mouse_genomes_project 3 57032502 57059077 - MGP_C3HHeJ_P0060589 Erich6 protein_coding protein_coding MGP_C3HHeJ_T0060590.1 MGP_C3HHeJ_G0026954.1 mouse_genomes_project 3 57032512 57051996 - MGP_C3HHeJ_P0060590 Erich6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0063778.1 MGP_C3HHeJ_G0027652.1 mouse_genomes_project 3 147034434 147101694 - MGP_C3HHeJ_P0063778 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063780.1 MGP_C3HHeJ_G0027652.1 mouse_genomes_project 3 147034673 147101788 - MGP_C3HHeJ_P0063780 protein_coding protein_coding MGP_C3HHeJ_T0061060.1 MGP_C3HHeJ_G0027069.1 mouse_genomes_project 3 85412177 85421912 - MGP_C3HHeJ_P0061060 Prss48 protein_coding protein_coding MGP_C3HHeJ_T0063676.1 MGP_C3HHeJ_G0027633.1 mouse_genomes_project 3 140762428 140931982 + MGP_C3HHeJ_P0063676 Tspan5 protein_coding protein_coding MGP_C3HHeJ_T0063677.1 MGP_C3HHeJ_G0027633.1 mouse_genomes_project 3 140762538 140928633 + MGP_C3HHeJ_P0063677 Tspan5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063678.1 MGP_C3HHeJ_G0027633.1 mouse_genomes_project 3 140762738 140921088 + MGP_C3HHeJ_P0063678 Tspan5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063679.1 MGP_C3HHeJ_G0027633.1 mouse_genomes_project 3 140763002 140918711 + MGP_C3HHeJ_P0063679 Tspan5 protein_coding protein_coding MGP_C3HHeJ_T0063680.1 MGP_C3HHeJ_G0027633.1 mouse_genomes_project 3 140797876 140926701 + MGP_C3HHeJ_P0063680 Tspan5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063681.1 MGP_C3HHeJ_G0027633.1 mouse_genomes_project 3 140863824 140928640 + MGP_C3HHeJ_P0063681 Tspan5 protein_coding protein_coding MGP_C3HHeJ_T0060396.1 MGP_C3HHeJ_G0026913.1 mouse_genomes_project 3 49689235 49701085 + Rab33b protein_coding processed_transcript MGP_C3HHeJ_T0060397.1 MGP_C3HHeJ_G0026913.1 mouse_genomes_project 3 49689245 49689840 + MGP_C3HHeJ_P0060397 Rab33b protein_coding protein_coding MGP_C3HHeJ_T0060398.1 MGP_C3HHeJ_G0026913.1 mouse_genomes_project 3 49689279 49703150 + MGP_C3HHeJ_P0060398 Rab33b protein_coding protein_coding MGP_C3HHeJ_T0061577.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89515885 89537034 - MGP_C3HHeJ_P0061577 Atp8b2 protein_coding protein_coding MGP_C3HHeJ_T0061578.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89515885 89539913 - MGP_C3HHeJ_P0061578 Atp8b2 protein_coding protein_coding MGP_C3HHeJ_T0061579.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89515893 89529770 - Atp8b2 protein_coding retained_intron MGP_C3HHeJ_T0061580.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89516560 89539684 - Atp8b2 protein_coding retained_intron MGP_C3HHeJ_T0061581.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89517253 89539913 - MGP_C3HHeJ_P0061581 Atp8b2 protein_coding protein_coding MGP_C3HHeJ_T0061582.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89517601 89520162 - MGP_C3HHeJ_P0061582 Atp8b2 protein_coding protein_coding MGP_C3HHeJ_T0061583.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89520118 89522168 - Atp8b2 protein_coding retained_intron MGP_C3HHeJ_T0061584.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89521592 89522877 - MGP_C3HHeJ_P0061584 Atp8b2 protein_coding protein_coding MGP_C3HHeJ_T0061585.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89522444 89522960 - Atp8b2 protein_coding retained_intron MGP_C3HHeJ_T0061586.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89522840 89523756 - Atp8b2 protein_coding retained_intron MGP_C3HHeJ_T0061587.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89522867 89524807 - MGP_C3HHeJ_P0061587 Atp8b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061588.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89522931 89524937 - Atp8b2 protein_coding retained_intron MGP_C3HHeJ_T0061589.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89524949 89526858 - Atp8b2 protein_coding retained_intron MGP_C3HHeJ_T0061590.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89530243 89531044 - Atp8b2 protein_coding retained_intron MGP_C3HHeJ_T0061591.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89530674 89535959 - MGP_C3HHeJ_P0061591 Atp8b2 protein_coding protein_coding MGP_C3HHeJ_T0061592.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89534411 89539519 - MGP_C3HHeJ_P0061592 Atp8b2 protein_coding protein_coding MGP_C3HHeJ_T0061593.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89534958 89538220 - MGP_C3HHeJ_P0061593 Atp8b2 protein_coding protein_coding MGP_C3HHeJ_T0013854.1 MGP_C3HHeJ_G0011958.1 mouse_genomes_project 3 37725305 37725585 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007395.1 MGP_C3HHeJ_G0006053.1 mouse_genomes_project 3 19335107 19335879 - Gm43674 lincRNA lincRNA MGP_C3HHeJ_T0001082.1 MGP_C3HHeJ_G0001016.1 mouse_genomes_project 3 10644152 10647847 + TEC TEC MGP_C3HHeJ_T0007458.1 MGP_C3HHeJ_G0006103.1 mouse_genomes_project 3 50766438 50803796 + Gm30173 lincRNA lincRNA MGP_C3HHeJ_T0059764.1 MGP_C3HHeJ_G0026800.1 mouse_genomes_project 3 15333033 15336377 + MGP_C3HHeJ_P0059764 Bhlhe22 protein_coding protein_coding MGP_C3HHeJ_T0014210.1 MGP_C3HHeJ_G0012314.1 mouse_genomes_project 3 154659027 154659583 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001202.1 MGP_C3HHeJ_G0001134.1 mouse_genomes_project 3 64795232 64797241 + TEC TEC MGP_C3HHeJ_T0062671.1 MGP_C3HHeJ_G0027431.1 mouse_genomes_project 3 107002044 107023067 + MGP_C3HHeJ_P0062671 Chia1 protein_coding protein_coding MGP_C3HHeJ_T0062672.1 MGP_C3HHeJ_G0027431.1 mouse_genomes_project 3 107002205 107019896 + MGP_C3HHeJ_P0062672 Chia1 protein_coding protein_coding MGP_C3HHeJ_T0062673.1 MGP_C3HHeJ_G0027431.1 mouse_genomes_project 3 107013424 107019512 + Chia1 protein_coding retained_intron MGP_C3HHeJ_T0099310.1 MGP_C3HHeJ_G0037504.1 mouse_genomes_project 3 139036949 139037056 + Gm26107 snRNA snRNA MGP_C3HHeJ_T0013997.1 MGP_C3HHeJ_G0012101.1 mouse_genomes_project 3 86360340 86360636 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098456.1 MGP_C3HHeJ_G0036661.1 mouse_genomes_project 3 106361996 106363945 + Gm43847 sense_intronic sense_intronic MGP_C3HHeJ_T0004320.1 MGP_C3HHeJ_G0003764.1 mouse_genomes_project 3 143523907 143531234 - Gm15688 antisense antisense MGP_C3HHeJ_T0059672.1 MGP_C3HHeJ_G0026767.1 mouse_genomes_project 3 6034971 6168746 - MGP_C3HHeJ_P0059672 Mrps28 protein_coding protein_coding MGP_C3HHeJ_T0001124.1 MGP_C3HHeJ_G0001058.1 mouse_genomes_project 3 35700011 35701280 + TEC TEC MGP_C3HHeJ_T0062702.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107612988 107661188 + MGP_C3HHeJ_P0062702 Lrif1 protein_coding protein_coding MGP_C3HHeJ_T0062703.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107612999 107657482 + Lrif1 protein_coding processed_transcript MGP_C3HHeJ_T0062704.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107647011 107657495 + MGP_C3HHeJ_P0062704 Lrif1 protein_coding protein_coding MGP_C3HHeJ_T0062705.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107647176 107659666 + MGP_C3HHeJ_P0062705 Lrif1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062706.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107647176 107661861 + MGP_C3HHeJ_P0062706 Lrif1 protein_coding protein_coding MGP_C3HHeJ_T0062707.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107647191 107657333 + MGP_C3HHeJ_P0062707 Lrif1 protein_coding protein_coding MGP_C3HHeJ_T0062708.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107647208 107659902 + Lrif1 protein_coding retained_intron MGP_C3HHeJ_T0062709.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107647209 107651946 + Lrif1 protein_coding retained_intron MGP_C3HHeJ_T0062710.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107647209 107658871 + Lrif1 protein_coding processed_transcript MGP_C3HHeJ_T0062711.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107647219 107661858 + MGP_C3HHeJ_P0062711 Lrif1 protein_coding protein_coding MGP_C3HHeJ_T0062712.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107647250 107657347 + MGP_C3HHeJ_P0062712 Lrif1 protein_coding protein_coding MGP_C3HHeJ_T0062713.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107658197 107659111 + Lrif1 protein_coding retained_intron MGP_C3HHeJ_T0007655.1 MGP_C3HHeJ_G0006257.1 mouse_genomes_project 3 145503453 145506660 + Gm43612 lincRNA lincRNA MGP_C3HHeJ_T0099290.1 MGP_C3HHeJ_G0037484.1 mouse_genomes_project 3 96748535 96748737 - Gm26232 snRNA snRNA MGP_C3HHeJ_T0001347.1 MGP_C3HHeJ_G0001278.1 mouse_genomes_project 3 154974477 154976256 + TEC TEC MGP_C3HHeJ_T0061665.1 MGP_C3HHeJ_G0027172.1 mouse_genomes_project 3 89828612 89832629 + MGP_C3HHeJ_P0061665 Jtb protein_coding protein_coding MGP_C3HHeJ_T0061666.1 MGP_C3HHeJ_G0027172.1 mouse_genomes_project 3 89828627 89832335 + MGP_C3HHeJ_P0061666 Jtb protein_coding protein_coding MGP_C3HHeJ_T0061667.1 MGP_C3HHeJ_G0027172.1 mouse_genomes_project 3 89828649 89832210 + Jtb protein_coding retained_intron MGP_C3HHeJ_T0061668.1 MGP_C3HHeJ_G0027172.1 mouse_genomes_project 3 89829062 89830828 + Jtb protein_coding retained_intron MGP_C3HHeJ_T0062931.1 MGP_C3HHeJ_G0027493.1 mouse_genomes_project 3 110013286 110070869 - MGP_C3HHeJ_P0062931 Fam102b protein_coding protein_coding MGP_C3HHeJ_T0062794.1 MGP_C3HHeJ_G0027464.1 mouse_genomes_project 3 108990287 108996478 - MGP_C3HHeJ_P0062794 Gstm1 protein_coding protein_coding MGP_C3HHeJ_T0062795.1 MGP_C3HHeJ_G0027464.1 mouse_genomes_project 3 108990293 108991349 - Gstm1 protein_coding processed_transcript MGP_C3HHeJ_T0062796.1 MGP_C3HHeJ_G0027464.1 mouse_genomes_project 3 108990659 108996311 - MGP_C3HHeJ_P0062796 Gstm1 protein_coding protein_coding MGP_C3HHeJ_T0100557.1 MGP_C3HHeJ_G0038751.1 mouse_genomes_project 3 88258291 88258426 + Gm25945 snoRNA snoRNA MGP_C3HHeJ_T0100547.1 MGP_C3HHeJ_G0038741.1 mouse_genomes_project 3 76286044 76286121 - Gm23644 snoRNA snoRNA MGP_C3HHeJ_T0064142.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160807438 160833650 - MGP_C3HHeJ_P0064142 Srsf11 protein_coding protein_coding MGP_C3HHeJ_T0064143.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160807609 160820388 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064144.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160807884 160828776 - MGP_C3HHeJ_P0064144 Srsf11 protein_coding protein_coding MGP_C3HHeJ_T0064145.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160808468 160820106 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064146.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160808834 160833679 - MGP_C3HHeJ_P0064146 Srsf11 protein_coding protein_coding MGP_C3HHeJ_T0064147.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160808859 160809486 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064148.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160809308 160810113 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064149.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160809316 160818970 - MGP_C3HHeJ_P0064149 Srsf11 protein_coding protein_coding MGP_C3HHeJ_T0064150.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160810952 160820635 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064151.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160813284 160815077 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064152.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160816353 160833607 - MGP_C3HHeJ_P0064152 Srsf11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064153.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160816393 160833626 - MGP_C3HHeJ_P0064153 Srsf11 protein_coding protein_coding MGP_C3HHeJ_T0064154.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160818978 160828465 - MGP_C3HHeJ_P0064154 Srsf11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064155.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160819895 160828581 - MGP_C3HHeJ_P0064155 Srsf11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064156.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160820374 160833617 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064157.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160821700 160833622 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064158.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160823489 160828770 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064159.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160827215 160828764 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064160.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160827827 160833625 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0007556.1 MGP_C3HHeJ_G0006177.1 mouse_genomes_project 3 102373419 102381319 + Gm43135 lincRNA lincRNA MGP_C3HHeJ_T0099323.1 MGP_C3HHeJ_G0037517.1 mouse_genomes_project 3 162692927 162693034 - Gm23941 snRNA snRNA MGP_C3HHeJ_T0013845.1 MGP_C3HHeJ_G0011949.1 mouse_genomes_project 3 35407359 35407680 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098414.1 MGP_C3HHeJ_G0036619.1 mouse_genomes_project 3 98667034 98670095 + Gm43189 sense_intronic sense_intronic MGP_C3HHeJ_T0060777.1 MGP_C3HHeJ_G0027002.1 mouse_genomes_project 3 66734686 67507188 + MGP_C3HHeJ_P0060777 Gm21949 protein_coding protein_coding MGP_C3HHeJ_T0060290.1 MGP_C3HHeJ_G0026898.1 mouse_genomes_project 3 38743665 38746080 - MGP_C3HHeJ_P0060290 1700034I23Rik protein_coding protein_coding MGP_C3HHeJ_T0062596.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105644431 105666928 - MGP_C3HHeJ_P0062596 Mov10 protein_coding protein_coding MGP_C3HHeJ_T0062597.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105644431 105666928 - MGP_C3HHeJ_P0062597 Mov10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062598.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105644431 105666607 - MGP_C3HHeJ_P0062598 Mov10 protein_coding protein_coding MGP_C3HHeJ_T0062599.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105644431 105666670 - MGP_C3HHeJ_P0062599 Mov10 protein_coding protein_coding MGP_C3HHeJ_T0062600.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105644431 105666928 - MGP_C3HHeJ_P0062600 Mov10 protein_coding protein_coding MGP_C3HHeJ_T0062601.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105644744 105666437 - MGP_C3HHeJ_P0062601 Mov10 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062602.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105653487 105665719 - Mov10 protein_coding processed_transcript MGP_C3HHeJ_T0062603.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105653528 105666928 - MGP_C3HHeJ_P0062603 Mov10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062604.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105654345 105666481 - Mov10 protein_coding retained_intron MGP_C3HHeJ_T0062605.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105654366 105666666 - Mov10 protein_coding processed_transcript MGP_C3HHeJ_T0013988.1 MGP_C3HHeJ_G0012092.1 mouse_genomes_project 3 81838725 81839224 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004327.1 MGP_C3HHeJ_G0003770.1 mouse_genomes_project 3 154695991 154696936 + Gm43455 antisense antisense MGP_C3HHeJ_T0004328.1 MGP_C3HHeJ_G0003770.1 mouse_genomes_project 3 154696210 154696936 + Gm43455 antisense antisense MGP_C3HHeJ_T0010482.1 MGP_C3HHeJ_G0008615.1 mouse_genomes_project 3 160328573 160328644 + Mir186 miRNA miRNA MGP_C3HHeJ_T0064125.1 MGP_C3HHeJ_G0027712.1 mouse_genomes_project 3 160349505 160436278 + MGP_C3HHeJ_P0064125 Ptger3 protein_coding protein_coding MGP_C3HHeJ_T0064126.1 MGP_C3HHeJ_G0027712.1 mouse_genomes_project 3 160349513 160392102 + Ptger3 protein_coding retained_intron MGP_C3HHeJ_T0064127.1 MGP_C3HHeJ_G0027712.1 mouse_genomes_project 3 160349513 160435146 + MGP_C3HHeJ_P0064127 Ptger3 protein_coding protein_coding MGP_C3HHeJ_T0010419.1 MGP_C3HHeJ_G0008552.1 mouse_genomes_project 3 26989752 26989850 + Mir551b miRNA miRNA MGP_C3HHeJ_T0063845.1 MGP_C3HHeJ_G0027669.1 mouse_genomes_project 3 148484881 148534326 + MGP_C3HHeJ_P0063845 Mcoln2 protein_coding protein_coding MGP_C3HHeJ_T0063846.1 MGP_C3HHeJ_G0027669.1 mouse_genomes_project 3 148485027 148510630 + Mcoln2 protein_coding retained_intron MGP_C3HHeJ_T0063847.1 MGP_C3HHeJ_G0027669.1 mouse_genomes_project 3 148485222 148534325 + MGP_C3HHeJ_P0063847 Mcoln2 protein_coding protein_coding MGP_C3HHeJ_T0063848.1 MGP_C3HHeJ_G0027669.1 mouse_genomes_project 3 148528550 148531299 + MGP_C3HHeJ_P0063848 Mcoln2 protein_coding protein_coding MGP_C3HHeJ_T0063849.1 MGP_C3HHeJ_G0027669.1 mouse_genomes_project 3 148530895 148533953 + Mcoln2 protein_coding retained_intron MGP_C3HHeJ_T0014175.1 MGP_C3HHeJ_G0012279.1 mouse_genomes_project 3 139625159 139625883 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098444.1 MGP_C3HHeJ_G0036649.1 mouse_genomes_project 3 104973879 104974595 - C030032O16Rik sense_intronic sense_intronic MGP_C3HHeJ_T0013855.1 MGP_C3HHeJ_G0011959.1 mouse_genomes_project 3 38475970 38476270 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013819.1 MGP_C3HHeJ_G0011923.1 mouse_genomes_project 3 27343593 27343732 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060415.1 MGP_C3HHeJ_G0026917.1 mouse_genomes_project 3 50498844 50583775 + MGP_C3HHeJ_P0060415 Foxo1 protein_coding protein_coding MGP_C3HHeJ_T0001109.1 MGP_C3HHeJ_G0001043.1 mouse_genomes_project 3 31802350 31807678 + TEC TEC MGP_C3HHeJ_T0061733.1 MGP_C3HHeJ_G0027184.1 mouse_genomes_project 3 90131539 90143364 + MGP_C3HHeJ_P0061733 S100a13 protein_coding protein_coding MGP_C3HHeJ_T0014002.1 MGP_C3HHeJ_G0012106.1 mouse_genomes_project 3 87819829 87819976 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100570.1 MGP_C3HHeJ_G0038764.1 mouse_genomes_project 3 109448792 109448916 + Gm22942 snoRNA snoRNA MGP_C3HHeJ_T0001099.1 MGP_C3HHeJ_G0001033.1 mouse_genomes_project 3 28079942 28082021 - TEC TEC MGP_C3HHeJ_T0061295.1 MGP_C3HHeJ_G0027117.1 mouse_genomes_project 3 88100740 88116901 + MGP_C3HHeJ_P0061295 Ubqln4 protein_coding protein_coding MGP_C3HHeJ_T0061296.1 MGP_C3HHeJ_G0027117.1 mouse_genomes_project 3 88100749 88110723 + Ubqln4 protein_coding retained_intron MGP_C3HHeJ_T0061297.1 MGP_C3HHeJ_G0027117.1 mouse_genomes_project 3 88100781 88103866 + MGP_C3HHeJ_P0061297 Ubqln4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061298.1 MGP_C3HHeJ_G0027117.1 mouse_genomes_project 3 88103730 88111678 + Ubqln4 protein_coding processed_transcript MGP_C3HHeJ_T0061299.1 MGP_C3HHeJ_G0027117.1 mouse_genomes_project 3 88111070 88112438 + Ubqln4 protein_coding retained_intron MGP_C3HHeJ_T0061177.1 MGP_C3HHeJ_G0027094.1 mouse_genomes_project 3 87501816 87517920 - MGP_C3HHeJ_P0061177 Bcan protein_coding protein_coding MGP_C3HHeJ_T0061178.1 MGP_C3HHeJ_G0027094.1 mouse_genomes_project 3 87506795 87508791 - Bcan protein_coding retained_intron MGP_C3HHeJ_T0061179.1 MGP_C3HHeJ_G0027094.1 mouse_genomes_project 3 87506795 87512177 - Bcan protein_coding retained_intron MGP_C3HHeJ_T0061180.1 MGP_C3HHeJ_G0027094.1 mouse_genomes_project 3 87507875 87510687 - Bcan protein_coding retained_intron MGP_C3HHeJ_T0061181.1 MGP_C3HHeJ_G0027094.1 mouse_genomes_project 3 87510766 87511587 - Bcan protein_coding retained_intron MGP_C3HHeJ_T0061182.1 MGP_C3HHeJ_G0027094.1 mouse_genomes_project 3 87511454 87517324 - MGP_C3HHeJ_P0061182 Bcan protein_coding protein_coding MGP_C3HHeJ_T0060078.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31511829 31512526 + Ttc14 protein_coding retained_intron MGP_C3HHeJ_T0060079.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31511837 31518248 + Ttc14 protein_coding retained_intron MGP_C3HHeJ_T0060080.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31511845 31519694 + MGP_C3HHeJ_P0060080 Ttc14 protein_coding protein_coding MGP_C3HHeJ_T0060081.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31511864 31524563 + MGP_C3HHeJ_P0060081 Ttc14 protein_coding protein_coding MGP_C3HHeJ_T0060082.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31511867 31536685 + MGP_C3HHeJ_P0060082 Ttc14 protein_coding protein_coding MGP_C3HHeJ_T0060083.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31511867 31526344 + MGP_C3HHeJ_P0060083 Ttc14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060084.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31511905 31526702 + MGP_C3HHeJ_P0060084 Ttc14 protein_coding protein_coding MGP_C3HHeJ_T0060085.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31511917 31524161 + MGP_C3HHeJ_P0060085 Ttc14 protein_coding protein_coding MGP_C3HHeJ_T0060086.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31511933 31526702 + MGP_C3HHeJ_P0060086 Ttc14 protein_coding protein_coding MGP_C3HHeJ_T0060087.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31517967 31524695 + MGP_C3HHeJ_P0060087 Ttc14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060088.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31519299 31519875 + Ttc14 protein_coding retained_intron MGP_C3HHeJ_T0059850.1 MGP_C3HHeJ_G0026818.1 mouse_genomes_project 3 21146536 22187097 - MGP_C3HHeJ_P0059850 Naaladl2 protein_coding protein_coding MGP_C3HHeJ_T0059851.1 MGP_C3HHeJ_G0026818.1 mouse_genomes_project 3 21152769 21291410 - Naaladl2 protein_coding processed_transcript MGP_C3HHeJ_T0059852.1 MGP_C3HHeJ_G0026818.1 mouse_genomes_project 3 21153419 21326336 - Naaladl2 protein_coding processed_transcript MGP_C3HHeJ_T0059853.1 MGP_C3HHeJ_G0026818.1 mouse_genomes_project 3 21935700 22551697 - Naaladl2 protein_coding retained_intron MGP_C3HHeJ_T0062407.1 MGP_C3HHeJ_G0027376.1 mouse_genomes_project 3 102046879 102049337 + Igsf3 protein_coding retained_intron MGP_C3HHeJ_T0062408.1 MGP_C3HHeJ_G0027376.1 mouse_genomes_project 3 102046879 102133740 + MGP_C3HHeJ_P0062408 Igsf3 protein_coding protein_coding MGP_C3HHeJ_T0062409.1 MGP_C3HHeJ_G0027376.1 mouse_genomes_project 3 102048134 102130822 + MGP_C3HHeJ_P0062409 Igsf3 protein_coding protein_coding MGP_C3HHeJ_T0063019.1 MGP_C3HHeJ_G0027512.1 mouse_genomes_project 3 117796776 117838219 + MGP_C3HHeJ_P0063019 Dbt protein_coding protein_coding MGP_C3HHeJ_T0063020.1 MGP_C3HHeJ_G0027512.1 mouse_genomes_project 3 117796825 117827383 + MGP_C3HHeJ_P0063020 Dbt protein_coding protein_coding MGP_C3HHeJ_T0063021.1 MGP_C3HHeJ_G0027512.1 mouse_genomes_project 3 117796834 117827405 + MGP_C3HHeJ_P0063021 Dbt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063022.1 MGP_C3HHeJ_G0027512.1 mouse_genomes_project 3 117805559 117823142 + Dbt protein_coding retained_intron MGP_C3HHeJ_T0063651.1 MGP_C3HHeJ_G0027628.1 mouse_genomes_project 3 140310531 140325266 + MGP_C3HHeJ_P0063651 Adh6a protein_coding protein_coding MGP_C3HHeJ_T0063652.1 MGP_C3HHeJ_G0027628.1 mouse_genomes_project 3 140310531 140325862 + MGP_C3HHeJ_P0063652 Adh6a protein_coding protein_coding MGP_C3HHeJ_T0063176.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 123847781 123990988 + Bcar3 protein_coding retained_intron MGP_C3HHeJ_T0063177.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 123982167 123990706 + Bcar3 protein_coding retained_intron MGP_C3HHeJ_T0063178.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 123982188 124094934 + MGP_C3HHeJ_P0063178 Bcar3 protein_coding protein_coding MGP_C3HHeJ_T0063179.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 123982233 124036476 + Bcar3 protein_coding processed_transcript MGP_C3HHeJ_T0063180.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 124048597 124073317 + MGP_C3HHeJ_P0063180 Bcar3 protein_coding protein_coding MGP_C3HHeJ_T0063181.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 124069543 124073318 + MGP_C3HHeJ_P0063181 Bcar3 protein_coding protein_coding MGP_C3HHeJ_T0063182.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 124072932 124077606 + Bcar3 protein_coding retained_intron MGP_C3HHeJ_T0063183.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 124075985 124077794 + MGP_C3HHeJ_P0063183 Bcar3 protein_coding protein_coding MGP_C3HHeJ_T0063184.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 124077078 124087953 + MGP_C3HHeJ_P0063184 Bcar3 protein_coding protein_coding MGP_C3HHeJ_T0063185.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 124089388 124090148 + Bcar3 protein_coding retained_intron MGP_C3HHeJ_T0013791.1 MGP_C3HHeJ_G0011895.1 mouse_genomes_project 3 15199444 15200360 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063025.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117874825 117908091 - MGP_C3HHeJ_P0063025 Trmt13 protein_coding protein_coding MGP_C3HHeJ_T0063026.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117874826 117888559 - MGP_C3HHeJ_P0063026 Trmt13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063027.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117874827 117888583 - MGP_C3HHeJ_P0063027 Trmt13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063028.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117875068 117877209 - Trmt13 protein_coding processed_transcript MGP_C3HHeJ_T0063029.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117877856 117888610 - Trmt13 protein_coding retained_intron MGP_C3HHeJ_T0063030.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117879543 117888408 - MGP_C3HHeJ_P0063030 Trmt13 protein_coding protein_coding MGP_C3HHeJ_T0063031.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117883292 117888391 - MGP_C3HHeJ_P0063031 Trmt13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063032.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117885712 117888524 - Trmt13 protein_coding retained_intron MGP_C3HHeJ_T0063033.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117887681 117888561 - MGP_C3HHeJ_P0063033 Trmt13 protein_coding protein_coding MGP_C3HHeJ_T0063038.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117889117 117907625 - Trmt13 protein_coding processed_transcript MGP_C3HHeJ_T0063040.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117907043 117907912 - Trmt13 protein_coding retained_intron MGP_C3HHeJ_T0017730.1 MGP_C3HHeJ_G0015265.1 mouse_genomes_project 3 48729809 48815991 - Gm6209 processed_transcript lincRNA MGP_C3HHeJ_T0017731.1 MGP_C3HHeJ_G0015265.1 mouse_genomes_project 3 48788123 48792760 - Gm6209 processed_transcript retained_intron MGP_C3HHeJ_T0004331.1 MGP_C3HHeJ_G0003773.1 mouse_genomes_project 3 155563717 155564337 + Gm16231 antisense antisense MGP_C3HHeJ_T0060930.1 MGP_C3HHeJ_G0027036.1 mouse_genomes_project 3 79918082 80041982 - MGP_C3HHeJ_P0060930 Gria2 protein_coding protein_coding MGP_C3HHeJ_T0060931.1 MGP_C3HHeJ_G0027036.1 mouse_genomes_project 3 79924429 80041982 - MGP_C3HHeJ_P0060931 Gria2 protein_coding protein_coding MGP_C3HHeJ_T0060932.1 MGP_C3HHeJ_G0027036.1 mouse_genomes_project 3 79924674 80041726 - MGP_C3HHeJ_P0060932 Gria2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060933.1 MGP_C3HHeJ_G0027036.1 mouse_genomes_project 3 79928969 80041938 - Gria2 protein_coding retained_intron MGP_C3HHeJ_T0060934.1 MGP_C3HHeJ_G0027036.1 mouse_genomes_project 3 79942078 80041797 - Gria2 protein_coding retained_intron MGP_C3HHeJ_T0060935.1 MGP_C3HHeJ_G0027036.1 mouse_genomes_project 3 79943960 80041871 - Gria2 protein_coding retained_intron MGP_C3HHeJ_T0060936.1 MGP_C3HHeJ_G0027036.1 mouse_genomes_project 3 79945200 80041927 - Gria2 protein_coding retained_intron MGP_C3HHeJ_T0060937.1 MGP_C3HHeJ_G0027036.1 mouse_genomes_project 3 80039184 80041840 - Gria2 protein_coding retained_intron MGP_C3HHeJ_T0004240.1 MGP_C3HHeJ_G0003715.1 mouse_genomes_project 3 100701085 100708479 - Spag17os antisense antisense MGP_C3HHeJ_T0004241.1 MGP_C3HHeJ_G0003715.1 mouse_genomes_project 3 100703060 100708479 - Spag17os antisense antisense MGP_C3HHeJ_T0013762.1 MGP_C3HHeJ_G0011866.1 mouse_genomes_project 3 7288591 7289405 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001103.1 MGP_C3HHeJ_G0001037.1 mouse_genomes_project 3 30117971 30119128 + TEC TEC MGP_C3HHeJ_T0014144.1 MGP_C3HHeJ_G0012248.1 mouse_genomes_project 3 131199328 131200371 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063842.1 MGP_C3HHeJ_G0027668.1 mouse_genomes_project 3 148453817 148461527 + MGP_C3HHeJ_P0063842 Mcoln3 protein_coding protein_coding MGP_C3HHeJ_T0063843.1 MGP_C3HHeJ_G0027668.1 mouse_genomes_project 3 148458056 148478426 + MGP_C3HHeJ_P0063843 Mcoln3 protein_coding protein_coding MGP_C3HHeJ_T0063844.1 MGP_C3HHeJ_G0027668.1 mouse_genomes_project 3 148475699 148477283 + Mcoln3 protein_coding retained_intron MGP_C3HHeJ_T0014074.1 MGP_C3HHeJ_G0012178.1 mouse_genomes_project 3 106926297 106926765 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013982.1 MGP_C3HHeJ_G0012086.1 mouse_genomes_project 3 78081700 78082206 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063587.1 MGP_C3HHeJ_G0027612.1 mouse_genomes_project 3 138617856 138754304 + Ppp3ca protein_coding processed_transcript MGP_C3HHeJ_T0063588.1 MGP_C3HHeJ_G0027612.1 mouse_genomes_project 3 138617856 138900566 + MGP_C3HHeJ_P0063588 Ppp3ca protein_coding protein_coding MGP_C3HHeJ_T0063589.1 MGP_C3HHeJ_G0027612.1 mouse_genomes_project 3 138618502 138898615 + MGP_C3HHeJ_P0063589 Ppp3ca protein_coding protein_coding MGP_C3HHeJ_T0063590.1 MGP_C3HHeJ_G0027612.1 mouse_genomes_project 3 138794437 138842220 + Ppp3ca protein_coding processed_transcript MGP_C3HHeJ_T0063591.1 MGP_C3HHeJ_G0027612.1 mouse_genomes_project 3 138841153 138843800 + Ppp3ca protein_coding retained_intron MGP_C3HHeJ_T0063592.1 MGP_C3HHeJ_G0027612.1 mouse_genomes_project 3 138848709 138850732 + Ppp3ca protein_coding retained_intron MGP_C3HHeJ_T0063593.1 MGP_C3HHeJ_G0027612.1 mouse_genomes_project 3 138863068 138891106 + Ppp3ca protein_coding processed_transcript MGP_C3HHeJ_T0063594.1 MGP_C3HHeJ_G0027612.1 mouse_genomes_project 3 138863884 138866395 + Ppp3ca protein_coding retained_intron MGP_C3HHeJ_T0013921.1 MGP_C3HHeJ_G0012025.1 mouse_genomes_project 3 59400497 59400876 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100566.1 MGP_C3HHeJ_G0038760.1 mouse_genomes_project 3 100901495 100901572 + Gm25802 snoRNA snoRNA MGP_C3HHeJ_T0007464.1 MGP_C3HHeJ_G0006108.1 mouse_genomes_project 3 52055555 52072385 + C820005J03Rik lincRNA lincRNA MGP_C3HHeJ_T0060979.1 MGP_C3HHeJ_G0027047.1 mouse_genomes_project 3 82166434 82178439 - MGP_C3HHeJ_P0060979 Lrat protein_coding protein_coding MGP_C3HHeJ_T0013859.1 MGP_C3HHeJ_G0011963.1 mouse_genomes_project 3 39881298 39881941 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014023.1 MGP_C3HHeJ_G0012127.1 mouse_genomes_project 3 93312469 93313252 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063763.1 MGP_C3HHeJ_G0027649.1 mouse_genomes_project 3 146615748 146760544 - MGP_C3HHeJ_P0063763 Hs2st1 protein_coding protein_coding MGP_C3HHeJ_T0063764.1 MGP_C3HHeJ_G0027649.1 mouse_genomes_project 3 146640005 146760244 - MGP_C3HHeJ_P0063764 Hs2st1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063765.1 MGP_C3HHeJ_G0027649.1 mouse_genomes_project 3 146758200 146760521 - Hs2st1 protein_coding retained_intron MGP_C3HHeJ_T0007641.1 MGP_C3HHeJ_G0006246.1 mouse_genomes_project 3 139996092 140011138 + Gm19708 lincRNA lincRNA MGP_C3HHeJ_T0007674.1 MGP_C3HHeJ_G0006273.1 mouse_genomes_project 3 148714897 148726664 - Gm10636 lincRNA lincRNA MGP_C3HHeJ_T0014141.1 MGP_C3HHeJ_G0012245.1 mouse_genomes_project 3 129988082 129988516 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060260.1 MGP_C3HHeJ_G0026894.1 mouse_genomes_project 3 38564883 38577473 + MGP_C3HHeJ_P0060260 Hspa4l protein_coding protein_coding MGP_C3HHeJ_T0060261.1 MGP_C3HHeJ_G0026894.1 mouse_genomes_project 3 38565791 38604190 + MGP_C3HHeJ_P0060261 Hspa4l protein_coding protein_coding MGP_C3HHeJ_T0060262.1 MGP_C3HHeJ_G0026894.1 mouse_genomes_project 3 38565839 38619435 + MGP_C3HHeJ_P0060262 Hspa4l protein_coding protein_coding MGP_C3HHeJ_T0060263.1 MGP_C3HHeJ_G0026894.1 mouse_genomes_project 3 38565893 38581236 + MGP_C3HHeJ_P0060263 Hspa4l protein_coding protein_coding MGP_C3HHeJ_T0060264.1 MGP_C3HHeJ_G0026894.1 mouse_genomes_project 3 38565992 38579000 + Hspa4l protein_coding retained_intron MGP_C3HHeJ_T0060265.1 MGP_C3HHeJ_G0026894.1 mouse_genomes_project 3 38566277 38612212 + MGP_C3HHeJ_P0060265 Hspa4l protein_coding protein_coding MGP_C3HHeJ_T0060266.1 MGP_C3HHeJ_G0026894.1 mouse_genomes_project 3 38594038 38604432 + Hspa4l protein_coding retained_intron MGP_C3HHeJ_T0060267.1 MGP_C3HHeJ_G0026894.1 mouse_genomes_project 3 38606635 38609445 + Hspa4l protein_coding retained_intron MGP_C3HHeJ_T0064062.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156581372 156606124 - MGP_C3HHeJ_P0064062 Acadm protein_coding protein_coding MGP_C3HHeJ_T0064063.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156584705 156589927 - Acadm protein_coding retained_intron MGP_C3HHeJ_T0064064.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156584846 156599301 - Acadm protein_coding retained_intron MGP_C3HHeJ_T0064065.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156589908 156596557 - Acadm protein_coding retained_intron MGP_C3HHeJ_T0064066.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156596071 156600166 - Acadm protein_coding retained_intron MGP_C3HHeJ_T0064067.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156596077 156605959 - MGP_C3HHeJ_P0064067 Acadm protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064068.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156596131 156605938 - MGP_C3HHeJ_P0064068 Acadm protein_coding protein_coding MGP_C3HHeJ_T0064069.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156599786 156605934 - Acadm protein_coding retained_intron MGP_C3HHeJ_T0064070.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156600148 156603395 - Acadm protein_coding retained_intron MGP_C3HHeJ_T0064071.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156603093 156605955 - Acadm protein_coding retained_intron MGP_C3HHeJ_T0007528.1 MGP_C3HHeJ_G0006152.1 mouse_genomes_project 3 88072680 88073951 - Gm37584 lincRNA lincRNA MGP_C3HHeJ_T0062838.1 MGP_C3HHeJ_G0027476.1 mouse_genomes_project 3 109367775 109383924 + MGP_C3HHeJ_P0062838 Mybphl protein_coding protein_coding MGP_C3HHeJ_T0062256.1 MGP_C3HHeJ_G0027336.1 mouse_genomes_project 3 97033333 97097013 + MGP_C3HHeJ_P0062256 Rnf115 protein_coding protein_coding MGP_C3HHeJ_T0062257.1 MGP_C3HHeJ_G0027336.1 mouse_genomes_project 3 97033341 97097499 + MGP_C3HHeJ_P0062257 Rnf115 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062258.1 MGP_C3HHeJ_G0027336.1 mouse_genomes_project 3 97033508 97089512 + Rnf115 protein_coding processed_transcript MGP_C3HHeJ_T0013847.1 MGP_C3HHeJ_G0011951.1 mouse_genomes_project 3 35590008 35590383 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061335.1 MGP_C3HHeJ_G0027120.1 mouse_genomes_project 3 88207242 88208487 - MGP_C3HHeJ_P0061335 Rxfp4 protein_coding protein_coding MGP_C3HHeJ_T0007567.1 MGP_C3HHeJ_G0006186.1 mouse_genomes_project 3 105499144 105501945 - Gm29561 lincRNA lincRNA MGP_C3HHeJ_T0061793.1 MGP_C3HHeJ_G0027219.1 mouse_genomes_project 3 92462661 92465436 - MGP_C3HHeJ_P0061793 2210017I01Rik protein_coding protein_coding MGP_C3HHeJ_T0060066.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30654801 30787969 - MGP_C3HHeJ_P0060066 Pex5l protein_coding protein_coding MGP_C3HHeJ_T0060067.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30654801 30786977 - MGP_C3HHeJ_P0060067 Pex5l protein_coding protein_coding MGP_C3HHeJ_T0060068.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30654801 30787969 - MGP_C3HHeJ_P0060068 Pex5l protein_coding protein_coding MGP_C3HHeJ_T0060069.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30654801 30787969 - MGP_C3HHeJ_P0060069 Pex5l protein_coding protein_coding MGP_C3HHeJ_T0060070.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30654801 30787969 - MGP_C3HHeJ_P0060070 Pex5l protein_coding protein_coding MGP_C3HHeJ_T0060071.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30655027 30787938 - MGP_C3HHeJ_P0060071 Pex5l protein_coding protein_coding MGP_C3HHeJ_T0060072.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30655347 30858362 - MGP_C3HHeJ_P0060072 Pex5l protein_coding protein_coding MGP_C3HHeJ_T0060073.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30655347 30787944 - MGP_C3HHeJ_P0060073 Pex5l protein_coding protein_coding MGP_C3HHeJ_T0060074.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30656023 30690659 - MGP_C3HHeJ_P0060074 Pex5l protein_coding protein_coding MGP_C3HHeJ_T0060075.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30659751 30858527 - Pex5l protein_coding retained_intron MGP_C3HHeJ_T0060076.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30839761 30858356 - Pex5l protein_coding processed_transcript MGP_C3HHeJ_T0060077.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30855235 30858463 - Pex5l protein_coding retained_intron MGP_C3HHeJ_T0098443.1 MGP_C3HHeJ_G0036648.1 mouse_genomes_project 3 104968424 104970334 - Gm43258 sense_intronic sense_intronic MGP_C3HHeJ_T0062192.1 MGP_C3HHeJ_G0027313.1 mouse_genomes_project 3 96470091 96470535 + MGP_C3HHeJ_P0062192 Hist2h2ab protein_coding protein_coding MGP_C3HHeJ_T0014183.1 MGP_C3HHeJ_G0012287.1 mouse_genomes_project 3 141160273 141160711 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013883.1 MGP_C3HHeJ_G0011987.1 mouse_genomes_project 3 48462483 48463072 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001161.1 MGP_C3HHeJ_G0001094.1 mouse_genomes_project 3 49975992 49980954 - TEC TEC MGP_C3HHeJ_T0001114.1 MGP_C3HHeJ_G0001048.1 mouse_genomes_project 3 33756650 33757441 - TEC TEC MGP_C3HHeJ_T0100517.1 MGP_C3HHeJ_G0038711.1 mouse_genomes_project 3 1703267 1703400 - Gm22944 snoRNA snoRNA MGP_C3HHeJ_T0001266.1 MGP_C3HHeJ_G0001198.1 mouse_genomes_project 3 122660537 122663160 + TEC TEC MGP_C3HHeJ_T0061977.1 MGP_C3HHeJ_G0027276.1 mouse_genomes_project 3 95302964 95305807 - MGP_C3HHeJ_P0061977 Tnfaip8l2 protein_coding protein_coding MGP_C3HHeJ_T0060379.1 MGP_C3HHeJ_G0026910.1 mouse_genomes_project 3 49578774 49586834 - MGP_C3HHeJ_P0060379 Mgarp protein_coding protein_coding MGP_C3HHeJ_T0060380.1 MGP_C3HHeJ_G0026910.1 mouse_genomes_project 3 49578774 49587024 - MGP_C3HHeJ_P0060380 Mgarp protein_coding protein_coding MGP_C3HHeJ_T0060381.1 MGP_C3HHeJ_G0026910.1 mouse_genomes_project 3 49578774 49586812 - MGP_C3HHeJ_P0060381 Mgarp protein_coding protein_coding MGP_C3HHeJ_T0060382.1 MGP_C3HHeJ_G0026910.1 mouse_genomes_project 3 49581163 49586789 - Mgarp protein_coding retained_intron MGP_C3HHeJ_T0060383.1 MGP_C3HHeJ_G0026910.1 mouse_genomes_project 3 49581604 49586774 - Mgarp protein_coding processed_transcript MGP_C3HHeJ_T0062541.1 MGP_C3HHeJ_G0027402.1 mouse_genomes_project 3 104605406 104635266 + MGP_C3HHeJ_P0062541 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014064.1 MGP_C3HHeJ_G0012168.1 mouse_genomes_project 3 103927986 103928741 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060475.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53055616 53062340 - MGP_C3HHeJ_P0060475 Exosc8 protein_coding protein_coding MGP_C3HHeJ_T0060476.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53055619 53056397 - Exosc8 protein_coding retained_intron MGP_C3HHeJ_T0060477.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53055620 53061984 - Exosc8 protein_coding retained_intron MGP_C3HHeJ_T0060478.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53056780 53061749 - Exosc8 protein_coding retained_intron MGP_C3HHeJ_T0060479.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53056792 53061260 - MGP_C3HHeJ_P0060479 Exosc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060480.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53058247 53062314 - Exosc8 protein_coding retained_intron MGP_C3HHeJ_T0060481.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53058942 53061993 - MGP_C3HHeJ_P0060481 Exosc8 protein_coding protein_coding MGP_C3HHeJ_T0060482.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53059091 53061284 - Exosc8 protein_coding retained_intron MGP_C3HHeJ_T0060483.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53059101 53060173 - Exosc8 protein_coding retained_intron MGP_C3HHeJ_T0060484.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53060550 53061982 - Exosc8 protein_coding retained_intron MGP_C3HHeJ_T0060485.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53060889 53061982 - Exosc8 protein_coding retained_intron MGP_C3HHeJ_T0011449.1 MGP_C3HHeJ_G0009582.1 mouse_genomes_project 3 88843574 88843826 + Gm22642 misc_RNA misc_RNA MGP_C3HHeJ_T0001286.1 MGP_C3HHeJ_G0001218.1 mouse_genomes_project 3 128271059 128274596 + TEC TEC MGP_C3HHeJ_T0001271.1 MGP_C3HHeJ_G0001203.1 mouse_genomes_project 3 123284405 123287117 - TEC TEC MGP_C3HHeJ_T0014019.1 MGP_C3HHeJ_G0012123.1 mouse_genomes_project 3 93059139 93059803 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007679.1 MGP_C3HHeJ_G0006278.1 mouse_genomes_project 3 151666823 151670907 - Gm10287 lincRNA lincRNA MGP_C3HHeJ_T0007680.1 MGP_C3HHeJ_G0006278.1 mouse_genomes_project 3 151666829 151670907 - Gm10287 lincRNA lincRNA MGP_C3HHeJ_T0014118.1 MGP_C3HHeJ_G0012222.1 mouse_genomes_project 3 122671920 122672915 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007506.1 MGP_C3HHeJ_G0006141.1 mouse_genomes_project 3 82201852 82293870 - Gm30097 lincRNA lincRNA MGP_C3HHeJ_T0007507.1 MGP_C3HHeJ_G0006141.1 mouse_genomes_project 3 82201954 82278585 - Gm30097 lincRNA lincRNA MGP_C3HHeJ_T0007537.1 MGP_C3HHeJ_G0006159.1 mouse_genomes_project 3 94474194 94477719 - 1700040D17Rik lincRNA lincRNA MGP_C3HHeJ_T0001352.1 MGP_C3HHeJ_G0001283.1 mouse_genomes_project 3 156810798 156813035 + TEC TEC MGP_C3HHeJ_T0099274.1 MGP_C3HHeJ_G0037468.1 mouse_genomes_project 3 88367457 88367619 + Gm23054 snRNA snRNA MGP_C3HHeJ_T0013736.1 MGP_C3HHeJ_G0011840.1 mouse_genomes_project 3 350316 351067 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101197.1 MGP_C3HHeJ_G0039336.1 mouse_genomes_project 3 96903047 96928463 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101198.1 MGP_C3HHeJ_G0039336.1 mouse_genomes_project 3 96903050 96928462 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101199.1 MGP_C3HHeJ_G0039336.1 mouse_genomes_project 3 96904012 96906605 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0013983.1 MGP_C3HHeJ_G0012087.1 mouse_genomes_project 3 78792839 78793486 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098441.1 MGP_C3HHeJ_G0036646.1 mouse_genomes_project 3 104954580 104958735 - Gm42702 sense_intronic sense_intronic MGP_C3HHeJ_T0098416.1 MGP_C3HHeJ_G0036621.1 mouse_genomes_project 3 99766564 99770031 + Gm42717 sense_intronic sense_intronic MGP_C3HHeJ_T0062313.1 MGP_C3HHeJ_G0027349.1 mouse_genomes_project 3 98043566 98255291 - MGP_C3HHeJ_P0062313 Pde4dip protein_coding protein_coding MGP_C3HHeJ_T0062314.1 MGP_C3HHeJ_G0027349.1 mouse_genomes_project 3 98043572 98048766 - Pde4dip protein_coding processed_transcript MGP_C3HHeJ_T0062315.1 MGP_C3HHeJ_G0027349.1 mouse_genomes_project 3 98043607 98255291 - MGP_C3HHeJ_P0062315 Pde4dip protein_coding protein_coding MGP_C3HHeJ_T0062316.1 MGP_C3HHeJ_G0027349.1 mouse_genomes_project 3 98048723 98051010 - Pde4dip protein_coding processed_transcript MGP_C3HHeJ_T0062317.1 MGP_C3HHeJ_G0027349.1 mouse_genomes_project 3 98093810 98123551 - MGP_C3HHeJ_P0062317 Pde4dip protein_coding protein_coding MGP_C3HHeJ_T0062318.1 MGP_C3HHeJ_G0027349.1 mouse_genomes_project 3 98095773 98123473 - MGP_C3HHeJ_P0062318 Pde4dip protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062319.1 MGP_C3HHeJ_G0027349.1 mouse_genomes_project 3 98102247 98234923 - MGP_C3HHeJ_P0062319 Pde4dip protein_coding protein_coding MGP_C3HHeJ_T0062320.1 MGP_C3HHeJ_G0027349.1 mouse_genomes_project 3 98155744 98188058 - MGP_C3HHeJ_P0062320 Pde4dip protein_coding protein_coding MGP_C3HHeJ_T0062321.1 MGP_C3HHeJ_G0027349.1 mouse_genomes_project 3 98184177 98234872 - Pde4dip protein_coding retained_intron MGP_C3HHeJ_T0101954.1 MGP_C3HHeJ_G0039919.1 mouse_genomes_project 3 83122399 83144070 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013842.1 MGP_C3HHeJ_G0011946.1 mouse_genomes_project 3 34951279 34952210 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013951.1 MGP_C3HHeJ_G0012055.1 mouse_genomes_project 3 68598533 68599039 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001333.1 MGP_C3HHeJ_G0001264.1 mouse_genomes_project 3 141001057 141002832 - TEC TEC MGP_C3HHeJ_T0062732.1 MGP_C3HHeJ_G0027449.1 mouse_genomes_project 3 108277309 108285586 - MGP_C3HHeJ_P0062732 Rbm15 protein_coding protein_coding MGP_C3HHeJ_T0062733.1 MGP_C3HHeJ_G0027449.1 mouse_genomes_project 3 108279010 108285014 - Rbm15 protein_coding retained_intron MGP_C3HHeJ_T0059974.1 MGP_C3HHeJ_G0026842.1 mouse_genomes_project 3 28441435 28465386 + Gpr160 protein_coding retained_intron MGP_C3HHeJ_T0059975.1 MGP_C3HHeJ_G0026842.1 mouse_genomes_project 3 28441435 28481851 + MGP_C3HHeJ_P0059975 Gpr160 protein_coding protein_coding MGP_C3HHeJ_T0059976.1 MGP_C3HHeJ_G0026842.1 mouse_genomes_project 3 28441435 28481851 + MGP_C3HHeJ_P0059976 Gpr160 protein_coding protein_coding MGP_C3HHeJ_T0059977.1 MGP_C3HHeJ_G0026842.1 mouse_genomes_project 3 28441435 28481853 + MGP_C3HHeJ_P0059977 Gpr160 protein_coding protein_coding MGP_C3HHeJ_T0059978.1 MGP_C3HHeJ_G0026842.1 mouse_genomes_project 3 28441474 28481851 + MGP_C3HHeJ_P0059978 Gpr160 protein_coding protein_coding MGP_C3HHeJ_T0059979.1 MGP_C3HHeJ_G0026842.1 mouse_genomes_project 3 28441478 28480453 + MGP_C3HHeJ_P0059979 Gpr160 protein_coding protein_coding MGP_C3HHeJ_T0059980.1 MGP_C3HHeJ_G0026842.1 mouse_genomes_project 3 28441500 28481851 + MGP_C3HHeJ_P0059980 Gpr160 protein_coding protein_coding MGP_C3HHeJ_T0059981.1 MGP_C3HHeJ_G0026842.1 mouse_genomes_project 3 28441628 28480482 + MGP_C3HHeJ_P0059981 Gpr160 protein_coding protein_coding MGP_C3HHeJ_T0014221.1 MGP_C3HHeJ_G0012325.1 mouse_genomes_project 3 161773061 161774058 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007660.1 MGP_C3HHeJ_G0006262.1 mouse_genomes_project 3 145801370 145803148 + Gm42704 lincRNA lincRNA MGP_C3HHeJ_T0061827.1 MGP_C3HHeJ_G0027245.1 mouse_genomes_project 3 93285006 93290750 + MGP_C3HHeJ_P0061827 Rptn protein_coding protein_coding MGP_C3HHeJ_T0063427.1 MGP_C3HHeJ_G0027583.1 mouse_genomes_project 3 132538785 132542258 - MGP_C3HHeJ_P0063427 Rpl34 protein_coding protein_coding MGP_C3HHeJ_T0063428.1 MGP_C3HHeJ_G0027583.1 mouse_genomes_project 3 132538788 132539350 - Rpl34 protein_coding retained_intron MGP_C3HHeJ_T0063429.1 MGP_C3HHeJ_G0027583.1 mouse_genomes_project 3 132538793 132542319 - MGP_C3HHeJ_P0063429 Rpl34 protein_coding protein_coding MGP_C3HHeJ_T0063430.1 MGP_C3HHeJ_G0027583.1 mouse_genomes_project 3 132538818 132542263 - Rpl34 protein_coding retained_intron MGP_C3HHeJ_T0063431.1 MGP_C3HHeJ_G0027583.1 mouse_genomes_project 3 132538830 132542242 - MGP_C3HHeJ_P0063431 Rpl34 protein_coding protein_coding MGP_C3HHeJ_T0063432.1 MGP_C3HHeJ_G0027583.1 mouse_genomes_project 3 132540267 132542255 - MGP_C3HHeJ_P0063432 Rpl34 protein_coding protein_coding MGP_C3HHeJ_T0063433.1 MGP_C3HHeJ_G0027583.1 mouse_genomes_project 3 132540503 132542268 - Rpl34 protein_coding retained_intron MGP_C3HHeJ_T0063434.1 MGP_C3HHeJ_G0027583.1 mouse_genomes_project 3 132540763 132542267 - MGP_C3HHeJ_P0063434 Rpl34 protein_coding protein_coding MGP_C3HHeJ_T0099263.1 MGP_C3HHeJ_G0037457.1 mouse_genomes_project 3 67426150 67426339 - Gm22073 snRNA snRNA MGP_C3HHeJ_T0007427.1 MGP_C3HHeJ_G0006082.1 mouse_genomes_project 3 35758231 35854034 + lincRNA lincRNA MGP_C3HHeJ_T0004251.1 MGP_C3HHeJ_G0003721.1 mouse_genomes_project 3 104772977 104777023 - Phtf1os antisense antisense MGP_C3HHeJ_T0099306.1 MGP_C3HHeJ_G0037500.1 mouse_genomes_project 3 133697523 133697617 + Gm26103 snRNA snRNA MGP_C3HHeJ_T0004175.1 MGP_C3HHeJ_G0003669.1 mouse_genomes_project 3 57433217 57436905 - Gm43570 antisense antisense MGP_C3HHeJ_T0014134.1 MGP_C3HHeJ_G0012238.1 mouse_genomes_project 3 125852544 125852791 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010428.1 MGP_C3HHeJ_G0008561.1 mouse_genomes_project 3 38433503 38433577 + Gm23810 miRNA miRNA MGP_C3HHeJ_T0061711.1 MGP_C3HHeJ_G0027180.1 mouse_genomes_project 3 90090404 90102244 + Ilf2 protein_coding retained_intron MGP_C3HHeJ_T0061712.1 MGP_C3HHeJ_G0027180.1 mouse_genomes_project 3 90090418 90093585 + Ilf2 protein_coding retained_intron MGP_C3HHeJ_T0061713.1 MGP_C3HHeJ_G0027180.1 mouse_genomes_project 3 90090425 90096648 + Ilf2 protein_coding retained_intron MGP_C3HHeJ_T0061714.1 MGP_C3HHeJ_G0027180.1 mouse_genomes_project 3 90090425 90102660 + MGP_C3HHeJ_P0061714 Ilf2 protein_coding protein_coding MGP_C3HHeJ_T0061715.1 MGP_C3HHeJ_G0027180.1 mouse_genomes_project 3 90090435 90099745 + Ilf2 protein_coding retained_intron MGP_C3HHeJ_T0061716.1 MGP_C3HHeJ_G0027180.1 mouse_genomes_project 3 90094957 90100669 + Ilf2 protein_coding retained_intron MGP_C3HHeJ_T0011447.1 MGP_C3HHeJ_G0009580.1 mouse_genomes_project 3 82055966 82056208 - Gm22038 misc_RNA misc_RNA MGP_C3HHeJ_T0013927.1 MGP_C3HHeJ_G0012031.1 mouse_genomes_project 3 62453453 62454407 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098452.1 MGP_C3HHeJ_G0036657.1 mouse_genomes_project 3 105482362 105484327 + Gm43585 sense_intronic sense_intronic MGP_C3HHeJ_T0061778.1 MGP_C3HHeJ_G0027206.1 mouse_genomes_project 3 92214398 92215654 + MGP_C3HHeJ_P0061778 Sprr2f protein_coding protein_coding MGP_C3HHeJ_T0007415.1 MGP_C3HHeJ_G0006072.1 mouse_genomes_project 3 32448686 32467005 - Gm3143 lincRNA lincRNA MGP_C3HHeJ_T0007416.1 MGP_C3HHeJ_G0006072.1 mouse_genomes_project 3 32458665 32467007 - Gm3143 lincRNA lincRNA MGP_C3HHeJ_T0060278.1 MGP_C3HHeJ_G0026896.1 mouse_genomes_project 3 38641948 38688459 - MGP_C3HHeJ_P0060278 protein_coding protein_coding MGP_C3HHeJ_T0060279.1 MGP_C3HHeJ_G0026896.1 mouse_genomes_project 3 38643353 38688376 - MGP_C3HHeJ_P0060279 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060280.1 MGP_C3HHeJ_G0026896.1 mouse_genomes_project 3 38651137 38688268 - MGP_C3HHeJ_P0060280 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060281.1 MGP_C3HHeJ_G0026896.1 mouse_genomes_project 3 38651657 38655172 - protein_coding retained_intron MGP_C3HHeJ_T0060282.1 MGP_C3HHeJ_G0026896.1 mouse_genomes_project 3 38661302 38688390 - MGP_C3HHeJ_P0060282 protein_coding protein_coding MGP_C3HHeJ_T0060220.1 MGP_C3HHeJ_G0026885.1 mouse_genomes_project 3 35196786 35249974 + MGP_C3HHeJ_P0060220 Fgf2 protein_coding protein_coding MGP_C3HHeJ_T0060221.1 MGP_C3HHeJ_G0026885.1 mouse_genomes_project 3 35197093 35254674 + MGP_C3HHeJ_P0060221 Fgf2 protein_coding protein_coding MGP_C3HHeJ_T0060222.1 MGP_C3HHeJ_G0026885.1 mouse_genomes_project 3 35197290 35249398 + MGP_C3HHeJ_P0060222 Fgf2 protein_coding protein_coding MGP_C3HHeJ_T0060223.1 MGP_C3HHeJ_G0026885.1 mouse_genomes_project 3 35215861 35249398 + Fgf2 protein_coding processed_transcript MGP_C3HHeJ_T0060224.1 MGP_C3HHeJ_G0026885.1 mouse_genomes_project 3 35230546 35249398 + Fgf2 protein_coding processed_transcript MGP_C3HHeJ_T0060225.1 MGP_C3HHeJ_G0026885.1 mouse_genomes_project 3 35230642 35249398 + MGP_C3HHeJ_P0060225 Fgf2 protein_coding protein_coding MGP_C3HHeJ_T0060226.1 MGP_C3HHeJ_G0026885.1 mouse_genomes_project 3 35230642 35249398 + MGP_C3HHeJ_P0060226 Fgf2 protein_coding protein_coding MGP_C3HHeJ_T0060227.1 MGP_C3HHeJ_G0026885.1 mouse_genomes_project 3 35249141 35249398 + Fgf2 protein_coding retained_intron MGP_C3HHeJ_T0013892.1 MGP_C3HHeJ_G0011996.1 mouse_genomes_project 3 51620513 51621251 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063074.1 MGP_C3HHeJ_G0027523.1 mouse_genomes_project 3 118658436 118707184 - MGP_C3HHeJ_P0063074 Plppr4 protein_coding protein_coding MGP_C3HHeJ_T0063075.1 MGP_C3HHeJ_G0027523.1 mouse_genomes_project 3 118660402 118707184 - Plppr4 protein_coding retained_intron MGP_C3HHeJ_T0063076.1 MGP_C3HHeJ_G0027523.1 mouse_genomes_project 3 118661221 118706556 - MGP_C3HHeJ_P0063076 Plppr4 protein_coding protein_coding MGP_C3HHeJ_T0017797.1 MGP_C3HHeJ_G0015292.1 mouse_genomes_project 3 157015050 157018432 + AI606473 processed_transcript lincRNA MGP_C3HHeJ_T0017798.1 MGP_C3HHeJ_G0015292.1 mouse_genomes_project 3 157016185 157016980 + AI606473 processed_transcript retained_intron MGP_C3HHeJ_T0014110.1 MGP_C3HHeJ_G0012214.1 mouse_genomes_project 3 118157563 118157953 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097899.1 MGP_C3HHeJ_G0036111.1 mouse_genomes_project 3 88897376 88898646 + pseudogene pseudogene MGP_C3HHeJ_T0100553.1 MGP_C3HHeJ_G0038747.1 mouse_genomes_project 3 85559932 85560003 - Rnu73b snoRNA snoRNA MGP_C3HHeJ_T0001147.1 MGP_C3HHeJ_G0001081.1 mouse_genomes_project 3 49050323 49054101 - TEC TEC MGP_C3HHeJ_T0001211.1 MGP_C3HHeJ_G0001143.1 mouse_genomes_project 3 74819751 74820264 - TEC TEC MGP_C3HHeJ_T0007632.1 MGP_C3HHeJ_G0006237.1 mouse_genomes_project 3 136255661 136275362 - 4930539C22Rik lincRNA lincRNA MGP_C3HHeJ_T0063244.1 MGP_C3HHeJ_G0027555.1 mouse_genomes_project 3 126112189 126134349 - MGP_C3HHeJ_P0063244 1700003H04Rik protein_coding protein_coding MGP_C3HHeJ_T0063245.1 MGP_C3HHeJ_G0027555.1 mouse_genomes_project 3 126112189 126134349 - MGP_C3HHeJ_P0063245 1700003H04Rik protein_coding protein_coding MGP_C3HHeJ_T0063246.1 MGP_C3HHeJ_G0027555.1 mouse_genomes_project 3 126121842 126134350 - MGP_C3HHeJ_P0063246 1700003H04Rik protein_coding protein_coding MGP_C3HHeJ_T0063247.1 MGP_C3HHeJ_G0027555.1 mouse_genomes_project 3 126126526 126134359 - MGP_C3HHeJ_P0063247 1700003H04Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063248.1 MGP_C3HHeJ_G0027555.1 mouse_genomes_project 3 126126527 126131762 - MGP_C3HHeJ_P0063248 1700003H04Rik protein_coding protein_coding MGP_C3HHeJ_T0063249.1 MGP_C3HHeJ_G0027555.1 mouse_genomes_project 3 126126527 126134352 - MGP_C3HHeJ_P0063249 1700003H04Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063316.1 MGP_C3HHeJ_G0027562.1 mouse_genomes_project 3 129221372 129297564 + MGP_C3HHeJ_P0063316 Zgrf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063317.1 MGP_C3HHeJ_G0027562.1 mouse_genomes_project 3 129221372 129297569 + MGP_C3HHeJ_P0063317 Zgrf1 protein_coding protein_coding MGP_C3HHeJ_T0063318.1 MGP_C3HHeJ_G0027562.1 mouse_genomes_project 3 129221385 129296681 + MGP_C3HHeJ_P0063318 Zgrf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063319.1 MGP_C3HHeJ_G0027562.1 mouse_genomes_project 3 129221385 129297571 + MGP_C3HHeJ_P0063319 Zgrf1 protein_coding protein_coding MGP_C3HHeJ_T0063320.1 MGP_C3HHeJ_G0027562.1 mouse_genomes_project 3 129221516 129234122 + MGP_C3HHeJ_P0063320 Zgrf1 protein_coding protein_coding MGP_C3HHeJ_T0063321.1 MGP_C3HHeJ_G0027562.1 mouse_genomes_project 3 129254606 129296532 + MGP_C3HHeJ_P0063321 Zgrf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060708.1 MGP_C3HHeJ_G0026987.1 mouse_genomes_project 3 63910960 64178232 + Kcnab1 protein_coding processed_transcript MGP_C3HHeJ_T0060709.1 MGP_C3HHeJ_G0026987.1 mouse_genomes_project 3 63910960 64190565 + MGP_C3HHeJ_P0060709 Kcnab1 protein_coding protein_coding MGP_C3HHeJ_T0060710.1 MGP_C3HHeJ_G0026987.1 mouse_genomes_project 3 63999980 64190569 + Kcnab1 protein_coding processed_transcript MGP_C3HHeJ_T0060711.1 MGP_C3HHeJ_G0026987.1 mouse_genomes_project 3 64065202 64189430 + Kcnab1 protein_coding processed_transcript MGP_C3HHeJ_T0060712.1 MGP_C3HHeJ_G0026987.1 mouse_genomes_project 3 64108968 64169510 + Kcnab1 protein_coding processed_transcript MGP_C3HHeJ_T0060713.1 MGP_C3HHeJ_G0026987.1 mouse_genomes_project 3 64166191 64171245 + Kcnab1 protein_coding retained_intron MGP_C3HHeJ_T0013940.1 MGP_C3HHeJ_G0012044.1 mouse_genomes_project 3 66438271 66438847 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062201.1 MGP_C3HHeJ_G0027321.1 mouse_genomes_project 3 96699374 96740704 - MGP_C3HHeJ_P0062201 BC107364 protein_coding protein_coding MGP_C3HHeJ_T0062202.1 MGP_C3HHeJ_G0027321.1 mouse_genomes_project 3 96699374 96740704 - MGP_C3HHeJ_P0062202 BC107364 protein_coding protein_coding MGP_C3HHeJ_T0014032.1 MGP_C3HHeJ_G0012136.1 mouse_genomes_project 3 96008287 96008434 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060659.1 MGP_C3HHeJ_G0026972.1 mouse_genomes_project 3 59908984 59915770 + MGP_C3HHeJ_P0060659 Rap2b protein_coding protein_coding MGP_C3HHeJ_T0001100.1 MGP_C3HHeJ_G0001034.1 mouse_genomes_project 3 28172391 28173281 - TEC TEC MGP_C3HHeJ_T0013754.1 MGP_C3HHeJ_G0011858.1 mouse_genomes_project 3 5664737 5665545 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061437.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743727 88748541 - MGP_C3HHeJ_P0061437 Mtx1 protein_coding protein_coding MGP_C3HHeJ_T0061438.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743729 88749078 - MGP_C3HHeJ_P0061438 Mtx1 protein_coding protein_coding MGP_C3HHeJ_T0061439.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743734 88744983 - MGP_C3HHeJ_P0061439 Mtx1 protein_coding protein_coding MGP_C3HHeJ_T0061440.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743735 88744313 - Mtx1 protein_coding retained_intron MGP_C3HHeJ_T0061441.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743735 88744741 - Mtx1 protein_coding processed_transcript MGP_C3HHeJ_T0061442.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743735 88749005 - MGP_C3HHeJ_P0061442 Mtx1 protein_coding protein_coding MGP_C3HHeJ_T0061443.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743737 88744768 - MGP_C3HHeJ_P0061443 Mtx1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061444.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743740 88748555 - MGP_C3HHeJ_P0061444 Mtx1 protein_coding protein_coding MGP_C3HHeJ_T0061445.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743861 88748488 - MGP_C3HHeJ_P0061445 Mtx1 protein_coding protein_coding MGP_C3HHeJ_T0061446.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743976 88748560 - MGP_C3HHeJ_P0061446 Mtx1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061447.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88744004 88763295 - MGP_C3HHeJ_P0061447 Mtx1 protein_coding protein_coding MGP_C3HHeJ_T0061448.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88744062 88745483 - Mtx1 protein_coding retained_intron MGP_C3HHeJ_T0061449.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88744294 88745370 - Mtx1 protein_coding retained_intron MGP_C3HHeJ_T0061450.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88744391 88748510 - Mtx1 protein_coding retained_intron MGP_C3HHeJ_T0061451.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88744678 88748533 - MGP_C3HHeJ_P0061451 Mtx1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061452.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88744906 88748525 - Mtx1 protein_coding retained_intron MGP_C3HHeJ_T0061453.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88745322 88748474 - MGP_C3HHeJ_P0061453 Mtx1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061460.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88760342 88763331 - Mtx1 protein_coding processed_transcript MGP_C3HHeJ_T0007484.1 MGP_C3HHeJ_G0006123.1 mouse_genomes_project 3 67980974 68005323 + Gm1647 lincRNA lincRNA MGP_C3HHeJ_T0001085.1 MGP_C3HHeJ_G0001019.1 mouse_genomes_project 3 16450076 16450788 - TEC TEC MGP_C3HHeJ_T0004161.1 MGP_C3HHeJ_G0003658.1 mouse_genomes_project 3 39461176 39462596 - Gm31266 antisense antisense MGP_C3HHeJ_T0010448.1 MGP_C3HHeJ_G0008581.1 mouse_genomes_project 3 93278301 93278439 + Gm44353 miRNA miRNA MGP_C3HHeJ_T0014151.1 MGP_C3HHeJ_G0012255.1 mouse_genomes_project 3 133130256 133132453 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059887.1 MGP_C3HHeJ_G0026827.1 mouse_genomes_project 3 25475342 25484694 + Pld1 protein_coding processed_transcript MGP_C3HHeJ_T0059888.1 MGP_C3HHeJ_G0026827.1 mouse_genomes_project 3 25475343 25561703 + MGP_C3HHeJ_P0059888 Pld1 protein_coding protein_coding MGP_C3HHeJ_T0059889.1 MGP_C3HHeJ_G0026827.1 mouse_genomes_project 3 25552575 25657502 + MGP_C3HHeJ_P0059889 Pld1 protein_coding protein_coding MGP_C3HHeJ_T0059890.1 MGP_C3HHeJ_G0026827.1 mouse_genomes_project 3 25564274 25659126 + MGP_C3HHeJ_P0059890 Pld1 protein_coding protein_coding MGP_C3HHeJ_T0059891.1 MGP_C3HHeJ_G0026827.1 mouse_genomes_project 3 25575072 25582663 + Pld1 protein_coding processed_transcript MGP_C3HHeJ_T0059892.1 MGP_C3HHeJ_G0026827.1 mouse_genomes_project 3 25596789 25611493 + Pld1 protein_coding retained_intron MGP_C3HHeJ_T0059893.1 MGP_C3HHeJ_G0026827.1 mouse_genomes_project 3 25603988 25607301 + Pld1 protein_coding retained_intron MGP_C3HHeJ_T0059894.1 MGP_C3HHeJ_G0026827.1 mouse_genomes_project 3 25635550 25656559 + MGP_C3HHeJ_P0059894 Pld1 protein_coding protein_coding MGP_C3HHeJ_T0061516.1 MGP_C3HHeJ_G0027149.1 mouse_genomes_project 3 88909636 88916305 + MGP_C3HHeJ_P0061516 unknown_likely_coding unknown_likely_coding MGP_C3HHeJ_T0001276.1 MGP_C3HHeJ_G0001208.1 mouse_genomes_project 3 124760279 124760879 - TEC TEC MGP_C3HHeJ_T0062356.1 MGP_C3HHeJ_G0027362.1 mouse_genomes_project 3 99421935 99440514 - MGP_C3HHeJ_P0062356 Hao2 protein_coding protein_coding MGP_C3HHeJ_T0062822.1 MGP_C3HHeJ_G0027471.1 mouse_genomes_project 3 109185981 109191129 - MGP_C3HHeJ_P0062822 Cyb561d1 protein_coding protein_coding MGP_C3HHeJ_T0062823.1 MGP_C3HHeJ_G0027471.1 mouse_genomes_project 3 109186065 109191507 - Cyb561d1 protein_coding processed_transcript MGP_C3HHeJ_T0062824.1 MGP_C3HHeJ_G0027471.1 mouse_genomes_project 3 109186065 109191129 - MGP_C3HHeJ_P0062824 Cyb561d1 protein_coding protein_coding MGP_C3HHeJ_T0062825.1 MGP_C3HHeJ_G0027471.1 mouse_genomes_project 3 109188567 109190890 - MGP_C3HHeJ_P0062825 Cyb561d1 protein_coding protein_coding MGP_C3HHeJ_T0014076.1 MGP_C3HHeJ_G0012180.1 mouse_genomes_project 3 108294852 108295597 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013930.1 MGP_C3HHeJ_G0012034.1 mouse_genomes_project 3 64757863 64758287 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099278.1 MGP_C3HHeJ_G0037472.1 mouse_genomes_project 3 89544403 89544568 - Gm24046 snRNA snRNA MGP_C3HHeJ_T0059704.1 MGP_C3HHeJ_G0026778.1 mouse_genomes_project 3 7649132 7668679 - MGP_C3HHeJ_P0059704 Impa1 protein_coding protein_coding MGP_C3HHeJ_T0059705.1 MGP_C3HHeJ_G0026778.1 mouse_genomes_project 3 7651130 7668679 - MGP_C3HHeJ_P0059705 Impa1 protein_coding protein_coding MGP_C3HHeJ_T0059706.1 MGP_C3HHeJ_G0026778.1 mouse_genomes_project 3 7652294 7653829 - Impa1 protein_coding retained_intron MGP_C3HHeJ_T0059707.1 MGP_C3HHeJ_G0026778.1 mouse_genomes_project 3 7652362 7668595 - MGP_C3HHeJ_P0059707 Impa1 protein_coding protein_coding MGP_C3HHeJ_T0059709.1 MGP_C3HHeJ_G0026778.1 mouse_genomes_project 3 7663421 7668372 - MGP_C3HHeJ_P0059709 Impa1 protein_coding protein_coding MGP_C3HHeJ_T0098463.1 MGP_C3HHeJ_G0036668.1 mouse_genomes_project 3 130952774 130954261 + Gm27195 sense_intronic sense_intronic MGP_C3HHeJ_T0061387.1 MGP_C3HHeJ_G0027130.1 mouse_genomes_project 3 88619862 88629585 - MGP_C3HHeJ_P0061387 Fdps protein_coding protein_coding MGP_C3HHeJ_T0061388.1 MGP_C3HHeJ_G0027130.1 mouse_genomes_project 3 88619862 88629514 - MGP_C3HHeJ_P0061388 Fdps protein_coding protein_coding MGP_C3HHeJ_T0061389.1 MGP_C3HHeJ_G0027130.1 mouse_genomes_project 3 88620023 88621954 - MGP_C3HHeJ_P0061389 Fdps protein_coding protein_coding MGP_C3HHeJ_T0061390.1 MGP_C3HHeJ_G0027130.1 mouse_genomes_project 3 88621330 88622258 - Fdps protein_coding retained_intron MGP_C3HHeJ_T0061391.1 MGP_C3HHeJ_G0027130.1 mouse_genomes_project 3 88621638 88628941 - MGP_C3HHeJ_P0061391 Fdps protein_coding protein_coding MGP_C3HHeJ_T0061392.1 MGP_C3HHeJ_G0027130.1 mouse_genomes_project 3 88621873 88629478 - MGP_C3HHeJ_P0061392 Fdps protein_coding protein_coding MGP_C3HHeJ_T0061393.1 MGP_C3HHeJ_G0027130.1 mouse_genomes_project 3 88625198 88629517 - Fdps protein_coding retained_intron MGP_C3HHeJ_T0100527.1 MGP_C3HHeJ_G0038721.1 mouse_genomes_project 3 31105570 31105713 - Gm24780 snoRNA snoRNA MGP_C3HHeJ_T0062877.1 MGP_C3HHeJ_G0027484.1 mouse_genomes_project 3 109611060 109668827 + MGP_C3HHeJ_P0062877 Wdr47 protein_coding protein_coding MGP_C3HHeJ_T0062878.1 MGP_C3HHeJ_G0027484.1 mouse_genomes_project 3 109611133 109639551 + MGP_C3HHeJ_P0062878 Wdr47 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062879.1 MGP_C3HHeJ_G0027484.1 mouse_genomes_project 3 109611170 109635844 + Wdr47 protein_coding retained_intron MGP_C3HHeJ_T0062880.1 MGP_C3HHeJ_G0027484.1 mouse_genomes_project 3 109639747 109645550 + Wdr47 protein_coding processed_transcript MGP_C3HHeJ_T0062881.1 MGP_C3HHeJ_G0027484.1 mouse_genomes_project 3 109640128 109648432 + Wdr47 protein_coding retained_intron MGP_C3HHeJ_T0062882.1 MGP_C3HHeJ_G0027484.1 mouse_genomes_project 3 109644243 109654027 + Wdr47 protein_coding processed_transcript MGP_C3HHeJ_T0062883.1 MGP_C3HHeJ_G0027484.1 mouse_genomes_project 3 109648080 109658744 + Wdr47 protein_coding retained_intron MGP_C3HHeJ_T0060431.1 MGP_C3HHeJ_G0026921.1 mouse_genomes_project 3 51740648 51759887 + MGP_C3HHeJ_P0060431 Proser1 protein_coding protein_coding MGP_C3HHeJ_T0060432.1 MGP_C3HHeJ_G0026921.1 mouse_genomes_project 3 51740789 51741729 + Proser1 protein_coding retained_intron MGP_C3HHeJ_T0060433.1 MGP_C3HHeJ_G0026921.1 mouse_genomes_project 3 51740914 51751447 + Proser1 protein_coding retained_intron MGP_C3HHeJ_T0060434.1 MGP_C3HHeJ_G0026921.1 mouse_genomes_project 3 51756089 51757935 + Proser1 protein_coding retained_intron MGP_C3HHeJ_T0004304.1 MGP_C3HHeJ_G0003755.1 mouse_genomes_project 3 135353262 135390979 + Gm42567 antisense antisense MGP_C3HHeJ_T0062481.1 MGP_C3HHeJ_G0027390.1 mouse_genomes_project 3 103792114 103810900 + MGP_C3HHeJ_P0062481 Nras protein_coding protein_coding MGP_C3HHeJ_T0062482.1 MGP_C3HHeJ_G0027390.1 mouse_genomes_project 3 103792177 103796364 + MGP_C3HHeJ_P0062482 Nras protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062483.1 MGP_C3HHeJ_G0027390.1 mouse_genomes_project 3 103792196 103798230 + MGP_C3HHeJ_P0062483 Nras protein_coding protein_coding MGP_C3HHeJ_T0062484.1 MGP_C3HHeJ_G0027390.1 mouse_genomes_project 3 103792423 103794142 + MGP_C3HHeJ_P0062484 Nras protein_coding protein_coding MGP_C3HHeJ_T0062485.1 MGP_C3HHeJ_G0027390.1 mouse_genomes_project 3 103792425 103797260 + MGP_C3HHeJ_P0062485 Nras protein_coding protein_coding MGP_C3HHeJ_T0062486.1 MGP_C3HHeJ_G0027390.1 mouse_genomes_project 3 103792572 103796363 + MGP_C3HHeJ_P0062486 Nras protein_coding protein_coding MGP_C3HHeJ_T0062487.1 MGP_C3HHeJ_G0027390.1 mouse_genomes_project 3 103792732 103800343 + MGP_C3HHeJ_P0062487 Nras protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062488.1 MGP_C3HHeJ_G0027390.1 mouse_genomes_project 3 103792732 103810892 + MGP_C3HHeJ_P0062488 Nras protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062489.1 MGP_C3HHeJ_G0027390.1 mouse_genomes_project 3 103792817 103796812 + Nras protein_coding retained_intron MGP_C3HHeJ_T0063635.1 MGP_C3HHeJ_G0027624.1 mouse_genomes_project 3 140141740 140160053 + MGP_C3HHeJ_P0063635 Trmt10a protein_coding protein_coding MGP_C3HHeJ_T0063636.1 MGP_C3HHeJ_G0027624.1 mouse_genomes_project 3 140141761 140154128 + Trmt10a protein_coding retained_intron MGP_C3HHeJ_T0063637.1 MGP_C3HHeJ_G0027624.1 mouse_genomes_project 3 140141809 140160050 + MGP_C3HHeJ_P0063637 Trmt10a protein_coding protein_coding MGP_C3HHeJ_T0063638.1 MGP_C3HHeJ_G0027624.1 mouse_genomes_project 3 140142091 140146665 + MGP_C3HHeJ_P0063638 Trmt10a protein_coding protein_coding MGP_C3HHeJ_T0063639.1 MGP_C3HHeJ_G0027624.1 mouse_genomes_project 3 140142153 140146767 + MGP_C3HHeJ_P0063639 Trmt10a protein_coding protein_coding MGP_C3HHeJ_T0063640.1 MGP_C3HHeJ_G0027624.1 mouse_genomes_project 3 140142202 140148786 + MGP_C3HHeJ_P0063640 Trmt10a protein_coding protein_coding MGP_C3HHeJ_T0101201.1 MGP_C3HHeJ_G0039338.1 mouse_genomes_project 3 125839512 125839942 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0100522.1 MGP_C3HHeJ_G0038716.1 mouse_genomes_project 3 11677222 11677347 - Gm23112 snoRNA snoRNA MGP_C3HHeJ_T0063459.1 MGP_C3HHeJ_G0027591.1 mouse_genomes_project 3 134431841 134447510 + MGP_C3HHeJ_P0063459 Gimd1 protein_coding protein_coding MGP_C3HHeJ_T0063460.1 MGP_C3HHeJ_G0027591.1 mouse_genomes_project 3 134436375 134446791 + MGP_C3HHeJ_P0063460 Gimd1 protein_coding protein_coding MGP_C3HHeJ_T0061233.1 MGP_C3HHeJ_G0027106.1 mouse_genomes_project 3 87865937 87872242 - MGP_C3HHeJ_P0061233 Tmem79 protein_coding protein_coding MGP_C3HHeJ_T0061234.1 MGP_C3HHeJ_G0027106.1 mouse_genomes_project 3 87866328 87872006 - MGP_C3HHeJ_P0061234 Tmem79 protein_coding protein_coding MGP_C3HHeJ_T0061235.1 MGP_C3HHeJ_G0027106.1 mouse_genomes_project 3 87866329 87872192 - MGP_C3HHeJ_P0061235 Tmem79 protein_coding protein_coding MGP_C3HHeJ_T0061236.1 MGP_C3HHeJ_G0027106.1 mouse_genomes_project 3 87870875 87873882 - MGP_C3HHeJ_P0061236 Tmem79 protein_coding protein_coding MGP_C3HHeJ_T0010439.1 MGP_C3HHeJ_G0008572.1 mouse_genomes_project 3 87747262 87747370 - Gm25641 miRNA miRNA MGP_C3HHeJ_T0014084.1 MGP_C3HHeJ_G0012188.1 mouse_genomes_project 3 109458627 109459006 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013745.1 MGP_C3HHeJ_G0011849.1 mouse_genomes_project 3 3337987 3340917 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014045.1 MGP_C3HHeJ_G0012149.1 mouse_genomes_project 3 99656747 99657331 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014036.1 MGP_C3HHeJ_G0012140.1 mouse_genomes_project 3 96337362 96337548 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060442.1 MGP_C3HHeJ_G0026925.1 mouse_genomes_project 3 52157113 52162981 - Ufm1 protein_coding retained_intron MGP_C3HHeJ_T0060443.1 MGP_C3HHeJ_G0026925.1 mouse_genomes_project 3 52157160 52163566 - MGP_C3HHeJ_P0060443 Ufm1 protein_coding protein_coding MGP_C3HHeJ_T0060444.1 MGP_C3HHeJ_G0026925.1 mouse_genomes_project 3 52157234 52163054 - MGP_C3HHeJ_P0060444 Ufm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060445.1 MGP_C3HHeJ_G0026925.1 mouse_genomes_project 3 52158102 52163058 - MGP_C3HHeJ_P0060445 Ufm1 protein_coding protein_coding MGP_C3HHeJ_T0060446.1 MGP_C3HHeJ_G0026925.1 mouse_genomes_project 3 52158907 52163054 - Ufm1 protein_coding retained_intron MGP_C3HHeJ_T0101202.1 MGP_C3HHeJ_G0039339.1 mouse_genomes_project 3 129144604 129145599 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0007489.1 MGP_C3HHeJ_G0006127.1 mouse_genomes_project 3 72398265 72531838 - lincRNA lincRNA MGP_C3HHeJ_T0097898.1 MGP_C3HHeJ_G0036110.1 mouse_genomes_project 3 84336178 84336703 - pseudogene pseudogene MGP_C3HHeJ_T0001230.1 MGP_C3HHeJ_G0001162.1 mouse_genomes_project 3 95805773 95807377 + TEC TEC MGP_C3HHeJ_T0062839.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109388480 109392820 + MGP_C3HHeJ_P0062839 Psrc1 protein_coding protein_coding MGP_C3HHeJ_T0062840.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109388492 109390050 + Psrc1 protein_coding processed_transcript MGP_C3HHeJ_T0062841.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109388493 109391244 + Psrc1 protein_coding processed_transcript MGP_C3HHeJ_T0062842.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109388500 109392872 + MGP_C3HHeJ_P0062842 Psrc1 protein_coding protein_coding MGP_C3HHeJ_T0062843.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109388520 109391025 + Psrc1 protein_coding processed_transcript MGP_C3HHeJ_T0062844.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109388557 109390051 + MGP_C3HHeJ_P0062844 Psrc1 protein_coding protein_coding MGP_C3HHeJ_T0062845.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109388578 109391264 + Psrc1 protein_coding processed_transcript MGP_C3HHeJ_T0062846.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109389035 109390586 + Psrc1 protein_coding retained_intron MGP_C3HHeJ_T0062847.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109389495 109391515 + Psrc1 protein_coding retained_intron MGP_C3HHeJ_T0062848.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109389498 109391346 + Psrc1 protein_coding retained_intron MGP_C3HHeJ_T0062849.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109390706 109391354 + Psrc1 protein_coding processed_transcript MGP_C3HHeJ_T0063682.1 MGP_C3HHeJ_G0027634.1 mouse_genomes_project 3 140949986 141103987 - MGP_C3HHeJ_P0063682 Rap1gds1 protein_coding protein_coding MGP_C3HHeJ_T0063683.1 MGP_C3HHeJ_G0027634.1 mouse_genomes_project 3 140949990 141103963 - MGP_C3HHeJ_P0063683 Rap1gds1 protein_coding protein_coding MGP_C3HHeJ_T0063684.1 MGP_C3HHeJ_G0027634.1 mouse_genomes_project 3 140949994 141103896 - MGP_C3HHeJ_P0063684 Rap1gds1 protein_coding protein_coding MGP_C3HHeJ_T0063685.1 MGP_C3HHeJ_G0027634.1 mouse_genomes_project 3 140964862 141103966 - MGP_C3HHeJ_P0063685 Rap1gds1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063686.1 MGP_C3HHeJ_G0027634.1 mouse_genomes_project 3 140964865 141103974 - MGP_C3HHeJ_P0063686 Rap1gds1 protein_coding protein_coding MGP_C3HHeJ_T0063687.1 MGP_C3HHeJ_G0027634.1 mouse_genomes_project 3 140981282 141009098 - Rap1gds1 protein_coding retained_intron MGP_C3HHeJ_T0063688.1 MGP_C3HHeJ_G0027634.1 mouse_genomes_project 3 141039586 141103987 - Rap1gds1 protein_coding retained_intron MGP_C3HHeJ_T0063689.1 MGP_C3HHeJ_G0027634.1 mouse_genomes_project 3 141046876 141103624 - Rap1gds1 protein_coding processed_transcript MGP_C3HHeJ_T0063690.1 MGP_C3HHeJ_G0027634.1 mouse_genomes_project 3 141076862 141103966 - Rap1gds1 protein_coding retained_intron MGP_C3HHeJ_T0060951.1 MGP_C3HHeJ_G0027040.1 mouse_genomes_project 3 81198617 81222513 - MGP_C3HHeJ_P0060951 Tdo2 protein_coding protein_coding MGP_C3HHeJ_T0060952.1 MGP_C3HHeJ_G0027040.1 mouse_genomes_project 3 81200251 81205601 - Tdo2 protein_coding processed_transcript MGP_C3HHeJ_T0060953.1 MGP_C3HHeJ_G0027040.1 mouse_genomes_project 3 81200318 81222513 - MGP_C3HHeJ_P0060953 Tdo2 protein_coding protein_coding MGP_C3HHeJ_T0060954.1 MGP_C3HHeJ_G0027040.1 mouse_genomes_project 3 81202564 81205553 - Tdo2 protein_coding retained_intron MGP_C3HHeJ_T0060268.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38623350 38640729 + MGP_C3HHeJ_P0060268 Plk4 protein_coding protein_coding MGP_C3HHeJ_T0060269.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38623359 38632259 + Plk4 protein_coding retained_intron MGP_C3HHeJ_T0060270.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38623373 38624955 + Plk4 protein_coding retained_intron MGP_C3HHeJ_T0060271.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38623373 38640597 + MGP_C3HHeJ_P0060271 Plk4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060272.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38623381 38629379 + Plk4 protein_coding retained_intron MGP_C3HHeJ_T0060273.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38623385 38640729 + MGP_C3HHeJ_P0060273 Plk4 protein_coding protein_coding MGP_C3HHeJ_T0060274.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38623585 38640263 + MGP_C3HHeJ_P0060274 Plk4 protein_coding protein_coding MGP_C3HHeJ_T0060275.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38624112 38628327 + MGP_C3HHeJ_P0060275 Plk4 protein_coding protein_coding MGP_C3HHeJ_T0060276.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38624794 38625376 + Plk4 protein_coding retained_intron MGP_C3HHeJ_T0060277.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38636583 38640728 + MGP_C3HHeJ_P0060277 Plk4 protein_coding protein_coding MGP_C3HHeJ_T0001367.1 MGP_C3HHeJ_G0001298.1 mouse_genomes_project 3 161094416 161098755 + TEC TEC MGP_C3HHeJ_T0013939.1 MGP_C3HHeJ_G0012043.1 mouse_genomes_project 3 65779837 65780159 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014046.1 MGP_C3HHeJ_G0012150.1 mouse_genomes_project 3 99737841 99738370 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010440.1 MGP_C3HHeJ_G0008573.1 mouse_genomes_project 3 87747271 87747360 + Mir9-1 miRNA miRNA MGP_C3HHeJ_T0063722.1 MGP_C3HHeJ_G0027642.1 mouse_genomes_project 3 144652958 144654882 + MGP_C3HHeJ_P0063722 Gbp3 protein_coding protein_coding MGP_C3HHeJ_T0063723.1 MGP_C3HHeJ_G0027642.1 mouse_genomes_project 3 144652984 144666136 + MGP_C3HHeJ_P0063723 Gbp3 protein_coding protein_coding MGP_C3HHeJ_T0063724.1 MGP_C3HHeJ_G0027642.1 mouse_genomes_project 3 144653075 144657120 + MGP_C3HHeJ_P0063724 Gbp3 protein_coding protein_coding MGP_C3HHeJ_T0063725.1 MGP_C3HHeJ_G0027642.1 mouse_genomes_project 3 144653077 144666143 + MGP_C3HHeJ_P0063725 Gbp3 protein_coding protein_coding MGP_C3HHeJ_T0063726.1 MGP_C3HHeJ_G0027642.1 mouse_genomes_project 3 144653107 144658446 + Gbp3 protein_coding processed_transcript MGP_C3HHeJ_T0063727.1 MGP_C3HHeJ_G0027642.1 mouse_genomes_project 3 144653353 144666141 + MGP_C3HHeJ_P0063727 Gbp3 protein_coding protein_coding MGP_C3HHeJ_T0063728.1 MGP_C3HHeJ_G0027642.1 mouse_genomes_project 3 144654178 144657992 + MGP_C3HHeJ_P0063728 Gbp3 protein_coding protein_coding MGP_C3HHeJ_T0100555.1 MGP_C3HHeJ_G0038749.1 mouse_genomes_project 3 86501994 86502126 + Gm24472 snoRNA snoRNA MGP_C3HHeJ_T0099287.1 MGP_C3HHeJ_G0037481.1 mouse_genomes_project 3 96683523 96683688 + Gm24136 snRNA snRNA MGP_C3HHeJ_T0014197.1 MGP_C3HHeJ_G0012301.1 mouse_genomes_project 3 146928846 146929413 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062835.1 MGP_C3HHeJ_G0027475.1 mouse_genomes_project 3 109281092 109363267 + MGP_C3HHeJ_P0062835 Sort1 protein_coding protein_coding MGP_C3HHeJ_T0062836.1 MGP_C3HHeJ_G0027475.1 mouse_genomes_project 3 109281101 109363335 + MGP_C3HHeJ_P0062836 Sort1 protein_coding protein_coding MGP_C3HHeJ_T0062837.1 MGP_C3HHeJ_G0027475.1 mouse_genomes_project 3 109357290 109363262 + Sort1 protein_coding retained_intron MGP_C3HHeJ_T0061845.1 MGP_C3HHeJ_G0027254.1 mouse_genomes_project 3 94463449 94469440 + MGP_C3HHeJ_P0061845 Lingo4 protein_coding protein_coding MGP_C3HHeJ_T0014205.1 MGP_C3HHeJ_G0012309.1 mouse_genomes_project 3 149585746 149586195 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013877.1 MGP_C3HHeJ_G0011981.1 mouse_genomes_project 3 47726481 47727043 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061144.1 MGP_C3HHeJ_G0027086.1 mouse_genomes_project 3 87339733 87345758 + MGP_C3HHeJ_P0061144 Sh2d2a protein_coding protein_coding MGP_C3HHeJ_T0061145.1 MGP_C3HHeJ_G0027086.1 mouse_genomes_project 3 87339983 87348696 + MGP_C3HHeJ_P0061145 Sh2d2a protein_coding protein_coding MGP_C3HHeJ_T0061146.1 MGP_C3HHeJ_G0027086.1 mouse_genomes_project 3 87339989 87342923 + Sh2d2a protein_coding retained_intron MGP_C3HHeJ_T0014048.1 MGP_C3HHeJ_G0012152.1 mouse_genomes_project 3 100066609 100067314 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011456.1 MGP_C3HHeJ_G0009589.1 mouse_genomes_project 3 127751763 127752031 - Gm26275 misc_RNA misc_RNA MGP_C3HHeJ_T0062204.1 MGP_C3HHeJ_G0027323.1 mouse_genomes_project 3 96843507 96847445 + MGP_C3HHeJ_P0062204 Txnip protein_coding protein_coding MGP_C3HHeJ_T0062205.1 MGP_C3HHeJ_G0027323.1 mouse_genomes_project 3 96843510 96847419 + MGP_C3HHeJ_P0062205 Txnip protein_coding protein_coding MGP_C3HHeJ_T0062206.1 MGP_C3HHeJ_G0027323.1 mouse_genomes_project 3 96845048 96845564 + Txnip protein_coding retained_intron MGP_C3HHeJ_T0062207.1 MGP_C3HHeJ_G0027323.1 mouse_genomes_project 3 96845061 96845755 + Txnip protein_coding processed_transcript MGP_C3HHeJ_T0062208.1 MGP_C3HHeJ_G0027323.1 mouse_genomes_project 3 96845273 96847420 + Txnip protein_coding processed_transcript MGP_C3HHeJ_T0062209.1 MGP_C3HHeJ_G0027323.1 mouse_genomes_project 3 96845604 96846125 + Txnip protein_coding retained_intron MGP_C3HHeJ_T0063927.1 MGP_C3HHeJ_G0027683.1 mouse_genomes_project 3 153987498 154111079 + MGP_C3HHeJ_P0063927 Adgrl4 protein_coding protein_coding MGP_C3HHeJ_T0063928.1 MGP_C3HHeJ_G0027683.1 mouse_genomes_project 3 153987540 154065467 + MGP_C3HHeJ_P0063928 Adgrl4 protein_coding protein_coding MGP_C3HHeJ_T0063929.1 MGP_C3HHeJ_G0027683.1 mouse_genomes_project 3 153987885 154063258 + Adgrl4 protein_coding processed_transcript MGP_C3HHeJ_T0063930.1 MGP_C3HHeJ_G0027683.1 mouse_genomes_project 3 153988707 154065438 + Adgrl4 protein_coding retained_intron MGP_C3HHeJ_T0063931.1 MGP_C3HHeJ_G0027683.1 mouse_genomes_project 3 154065341 154073409 + Adgrl4 protein_coding processed_transcript MGP_C3HHeJ_T0063932.1 MGP_C3HHeJ_G0027683.1 mouse_genomes_project 3 154083388 154088105 + Adgrl4 protein_coding processed_transcript MGP_C3HHeJ_T0060157.1 MGP_C3HHeJ_G0026875.1 mouse_genomes_project 3 34381246 34394255 + MGP_C3HHeJ_P0060157 Exosc9 protein_coding protein_coding MGP_C3HHeJ_T0060158.1 MGP_C3HHeJ_G0026875.1 mouse_genomes_project 3 34381246 34391790 + MGP_C3HHeJ_P0060158 Exosc9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060159.1 MGP_C3HHeJ_G0026875.1 mouse_genomes_project 3 34381254 34385388 + Exosc9 protein_coding retained_intron MGP_C3HHeJ_T0060160.1 MGP_C3HHeJ_G0026875.1 mouse_genomes_project 3 34381267 34385607 + Exosc9 protein_coding retained_intron MGP_C3HHeJ_T0060161.1 MGP_C3HHeJ_G0026875.1 mouse_genomes_project 3 34381278 34385561 + MGP_C3HHeJ_P0060161 Exosc9 protein_coding protein_coding MGP_C3HHeJ_T0060162.1 MGP_C3HHeJ_G0026875.1 mouse_genomes_project 3 34381291 34390035 + Exosc9 protein_coding retained_intron MGP_C3HHeJ_T0060163.1 MGP_C3HHeJ_G0026875.1 mouse_genomes_project 3 34384173 34391765 + MGP_C3HHeJ_P0060163 Exosc9 protein_coding protein_coding MGP_C3HHeJ_T0060164.1 MGP_C3HHeJ_G0026875.1 mouse_genomes_project 3 34390822 34394173 + MGP_C3HHeJ_P0060164 Exosc9 protein_coding protein_coding MGP_C3HHeJ_T0007457.1 MGP_C3HHeJ_G0006102.1 mouse_genomes_project 3 50424753 50426995 + Gm37170 lincRNA lincRNA MGP_C3HHeJ_T0007426.1 MGP_C3HHeJ_G0006081.1 mouse_genomes_project 3 35616620 35622878 + Gm42921 lincRNA lincRNA MGP_C3HHeJ_T0001123.1 MGP_C3HHeJ_G0001057.1 mouse_genomes_project 3 35696655 35697768 + TEC TEC MGP_C3HHeJ_T0014211.1 MGP_C3HHeJ_G0012315.1 mouse_genomes_project 3 154745606 154746276 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001209.1 MGP_C3HHeJ_G0001141.1 mouse_genomes_project 3 74127018 74129238 - TEC TEC MGP_C3HHeJ_T0062723.1 MGP_C3HHeJ_G0027445.1 mouse_genomes_project 3 108179170 108183278 + MGP_C3HHeJ_P0062723 A630076J17Rik protein_coding protein_coding MGP_C3HHeJ_T0013774.1 MGP_C3HHeJ_G0011878.1 mouse_genomes_project 3 10799006 10799407 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007500.1 MGP_C3HHeJ_G0006135.1 mouse_genomes_project 3 79504343 79555416 - Gm37971 lincRNA lincRNA MGP_C3HHeJ_T0062169.1 MGP_C3HHeJ_G0027308.1 mouse_genomes_project 3 96356133 96393322 + MGP_C3HHeJ_P0062169 Otud7b protein_coding protein_coding MGP_C3HHeJ_T0062170.1 MGP_C3HHeJ_G0027308.1 mouse_genomes_project 3 96356133 96396130 + MGP_C3HHeJ_P0062170 Otud7b protein_coding protein_coding MGP_C3HHeJ_T0062171.1 MGP_C3HHeJ_G0027308.1 mouse_genomes_project 3 96356133 96412937 + MGP_C3HHeJ_P0062171 Otud7b protein_coding protein_coding MGP_C3HHeJ_T0062172.1 MGP_C3HHeJ_G0027308.1 mouse_genomes_project 3 96356133 96412937 + MGP_C3HHeJ_P0062172 Otud7b protein_coding protein_coding MGP_C3HHeJ_T0062173.1 MGP_C3HHeJ_G0027308.1 mouse_genomes_project 3 96356152 96382911 + Otud7b protein_coding processed_transcript MGP_C3HHeJ_T0062174.1 MGP_C3HHeJ_G0027308.1 mouse_genomes_project 3 96356154 96393357 + Otud7b protein_coding processed_transcript MGP_C3HHeJ_T0062175.1 MGP_C3HHeJ_G0027308.1 mouse_genomes_project 3 96358682 96412938 + MGP_C3HHeJ_P0062175 Otud7b protein_coding protein_coding MGP_C3HHeJ_T0062176.1 MGP_C3HHeJ_G0027308.1 mouse_genomes_project 3 96402520 96404380 + Otud7b protein_coding processed_transcript MGP_C3HHeJ_T0061073.1 MGP_C3HHeJ_G0027072.1 mouse_genomes_project 3 85960858 85964477 - MGP_C3HHeJ_P0061073 Mab21l2 protein_coding protein_coding MGP_C3HHeJ_T0061074.1 MGP_C3HHeJ_G0027072.1 mouse_genomes_project 3 85962242 85964822 - Mab21l2 protein_coding processed_pseudogene MGP_C3HHeJ_T0061422.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88717718 88719260 + MGP_C3HHeJ_P0061422 Fam189b protein_coding protein_coding MGP_C3HHeJ_T0061423.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88717778 88723817 + MGP_C3HHeJ_P0061423 Fam189b protein_coding protein_coding MGP_C3HHeJ_T0061424.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88717779 88723815 + MGP_C3HHeJ_P0061424 Fam189b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061425.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88718155 88723816 + MGP_C3HHeJ_P0061425 Fam189b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061426.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88718208 88723814 + MGP_C3HHeJ_P0061426 Fam189b protein_coding protein_coding MGP_C3HHeJ_T0061427.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88718216 88723821 + MGP_C3HHeJ_P0061427 Fam189b protein_coding protein_coding MGP_C3HHeJ_T0061428.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88718804 88720350 + Fam189b protein_coding retained_intron MGP_C3HHeJ_T0061429.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88721901 88723003 + Fam189b protein_coding retained_intron MGP_C3HHeJ_T0061430.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88722459 88723002 + Fam189b protein_coding retained_intron MGP_C3HHeJ_T0061431.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88722509 88723306 + Fam189b protein_coding processed_transcript MGP_C3HHeJ_T0013934.1 MGP_C3HHeJ_G0012038.1 mouse_genomes_project 3 64927587 64927846 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004293.1 MGP_C3HHeJ_G0003746.1 mouse_genomes_project 3 128806976 128813781 + Gm16958 antisense antisense MGP_C3HHeJ_T0004294.1 MGP_C3HHeJ_G0003746.1 mouse_genomes_project 3 128807010 128812810 + Gm16958 antisense antisense MGP_C3HHeJ_T0013821.1 MGP_C3HHeJ_G0011925.1 mouse_genomes_project 3 28143880 28144353 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062884.1 MGP_C3HHeJ_G0027485.1 mouse_genomes_project 3 109677236 109702051 + MGP_C3HHeJ_P0062884 Clcc1 protein_coding protein_coding MGP_C3HHeJ_T0062885.1 MGP_C3HHeJ_G0027485.1 mouse_genomes_project 3 109677272 109686200 + Clcc1 protein_coding processed_transcript MGP_C3HHeJ_T0062886.1 MGP_C3HHeJ_G0027485.1 mouse_genomes_project 3 109677280 109691282 + Clcc1 protein_coding processed_transcript MGP_C3HHeJ_T0062887.1 MGP_C3HHeJ_G0027485.1 mouse_genomes_project 3 109677281 109702047 + MGP_C3HHeJ_P0062887 Clcc1 protein_coding protein_coding MGP_C3HHeJ_T0062888.1 MGP_C3HHeJ_G0027485.1 mouse_genomes_project 3 109677281 109686749 + MGP_C3HHeJ_P0062888 Clcc1 protein_coding protein_coding MGP_C3HHeJ_T0062889.1 MGP_C3HHeJ_G0027485.1 mouse_genomes_project 3 109677313 109701223 + MGP_C3HHeJ_P0062889 Clcc1 protein_coding protein_coding MGP_C3HHeJ_T0062890.1 MGP_C3HHeJ_G0027485.1 mouse_genomes_project 3 109686392 109692032 + Clcc1 protein_coding processed_transcript MGP_C3HHeJ_T0062891.1 MGP_C3HHeJ_G0027485.1 mouse_genomes_project 3 109691055 109692038 + Clcc1 protein_coding retained_intron MGP_C3HHeJ_T0100530.1 MGP_C3HHeJ_G0038724.1 mouse_genomes_project 3 35856412 35856543 - Gm22899 snoRNA snoRNA MGP_C3HHeJ_T0063436.1 MGP_C3HHeJ_G0027585.1 mouse_genomes_project 3 132950526 133068384 + MGP_C3HHeJ_P0063436 Lef1 protein_coding protein_coding MGP_C3HHeJ_T0063437.1 MGP_C3HHeJ_G0027585.1 mouse_genomes_project 3 132950526 133068384 + MGP_C3HHeJ_P0063437 Lef1 protein_coding protein_coding MGP_C3HHeJ_T0063438.1 MGP_C3HHeJ_G0027585.1 mouse_genomes_project 3 132950526 133068384 + MGP_C3HHeJ_P0063438 Lef1 protein_coding protein_coding MGP_C3HHeJ_T0063439.1 MGP_C3HHeJ_G0027585.1 mouse_genomes_project 3 132952862 132957465 + Lef1 protein_coding retained_intron MGP_C3HHeJ_T0063440.1 MGP_C3HHeJ_G0027585.1 mouse_genomes_project 3 132952862 133068384 + MGP_C3HHeJ_P0063440 Lef1 protein_coding protein_coding MGP_C3HHeJ_T0063441.1 MGP_C3HHeJ_G0027585.1 mouse_genomes_project 3 132952871 133031918 + Lef1 protein_coding retained_intron MGP_C3HHeJ_T0063442.1 MGP_C3HHeJ_G0027585.1 mouse_genomes_project 3 132953879 133028576 + Lef1 protein_coding retained_intron MGP_C3HHeJ_T0063443.1 MGP_C3HHeJ_G0027585.1 mouse_genomes_project 3 132953921 133048716 + Lef1 protein_coding processed_transcript MGP_C3HHeJ_T0007392.1 MGP_C3HHeJ_G0006050.1 mouse_genomes_project 3 17648402 17650161 + Gm43525 lincRNA lincRNA MGP_C3HHeJ_T0060822.1 MGP_C3HHeJ_G0027010.1 mouse_genomes_project 3 67916070 67976931 - MGP_C3HHeJ_P0060822 Kpna4 protein_coding protein_coding MGP_C3HHeJ_T0060823.1 MGP_C3HHeJ_G0027010.1 mouse_genomes_project 3 67921142 67976910 - MGP_C3HHeJ_P0060823 Kpna4 protein_coding protein_coding MGP_C3HHeJ_T0060824.1 MGP_C3HHeJ_G0027010.1 mouse_genomes_project 3 67944703 67976448 - MGP_C3HHeJ_P0060824 Kpna4 protein_coding protein_coding MGP_C3HHeJ_T0017764.1 MGP_C3HHeJ_G0015281.1 mouse_genomes_project 3 110166482 110168845 - Gm43223 processed_transcript lincRNA MGP_C3HHeJ_T0017765.1 MGP_C3HHeJ_G0015281.1 mouse_genomes_project 3 110166491 110168623 - Gm43223 processed_transcript processed_transcript MGP_C3HHeJ_T0062301.1 MGP_C3HHeJ_G0027346.1 mouse_genomes_project 3 97981142 98008400 + MGP_C3HHeJ_P0062301 Fmo5 protein_coding protein_coding MGP_C3HHeJ_T0062302.1 MGP_C3HHeJ_G0027346.1 mouse_genomes_project 3 97981176 98005672 + MGP_C3HHeJ_P0062302 Fmo5 protein_coding protein_coding MGP_C3HHeJ_T0062303.1 MGP_C3HHeJ_G0027346.1 mouse_genomes_project 3 97981186 97982271 + Fmo5 protein_coding retained_intron MGP_C3HHeJ_T0062304.1 MGP_C3HHeJ_G0027346.1 mouse_genomes_project 3 97981195 98005722 + MGP_C3HHeJ_P0062304 Fmo5 protein_coding protein_coding MGP_C3HHeJ_T0062305.1 MGP_C3HHeJ_G0027346.1 mouse_genomes_project 3 97981221 97992138 + Fmo5 protein_coding processed_transcript MGP_C3HHeJ_T0001334.1 MGP_C3HHeJ_G0001265.1 mouse_genomes_project 3 143763012 143765624 + TEC TEC MGP_C3HHeJ_T0001121.1 MGP_C3HHeJ_G0001055.1 mouse_genomes_project 3 35496588 35500063 + TEC TEC MGP_C3HHeJ_T0062621.1 MGP_C3HHeJ_G0027416.1 mouse_genomes_project 3 105800110 105817916 - MGP_C3HHeJ_P0062621 Wnt2b protein_coding protein_coding MGP_C3HHeJ_T0062622.1 MGP_C3HHeJ_G0027416.1 mouse_genomes_project 3 105816407 105817716 - Wnt2b protein_coding retained_intron MGP_C3HHeJ_T0007482.1 MGP_C3HHeJ_G0006121.1 mouse_genomes_project 3 67616089 67617617 - 4930535E02Rik lincRNA lincRNA MGP_C3HHeJ_T0062162.1 MGP_C3HHeJ_G0027306.1 mouse_genomes_project 3 96236935 96243718 - MGP_C3HHeJ_P0062162 Plekho1 protein_coding protein_coding MGP_C3HHeJ_T0062163.1 MGP_C3HHeJ_G0027306.1 mouse_genomes_project 3 96236953 96246147 - MGP_C3HHeJ_P0062163 Plekho1 protein_coding protein_coding MGP_C3HHeJ_T0062164.1 MGP_C3HHeJ_G0027306.1 mouse_genomes_project 3 96237506 96243762 - MGP_C3HHeJ_P0062164 Plekho1 protein_coding protein_coding MGP_C3HHeJ_T0062165.1 MGP_C3HHeJ_G0027306.1 mouse_genomes_project 3 96243384 96243718 - Plekho1 protein_coding retained_intron MGP_C3HHeJ_T0062923.1 MGP_C3HHeJ_G0027491.1 mouse_genomes_project 3 109975646 109976218 + Henmt1 protein_coding processed_transcript MGP_C3HHeJ_T0062925.1 MGP_C3HHeJ_G0027491.1 mouse_genomes_project 3 109975832 109978491 + MGP_C3HHeJ_P0062925 Henmt1 protein_coding protein_coding MGP_C3HHeJ_T0062926.1 MGP_C3HHeJ_G0027491.1 mouse_genomes_project 3 109975857 109997686 + MGP_C3HHeJ_P0062926 Henmt1 protein_coding protein_coding MGP_C3HHeJ_T0062927.1 MGP_C3HHeJ_G0027491.1 mouse_genomes_project 3 109975887 109996331 + MGP_C3HHeJ_P0062927 Henmt1 protein_coding protein_coding MGP_C3HHeJ_T0062928.1 MGP_C3HHeJ_G0027491.1 mouse_genomes_project 3 109976257 109997784 + MGP_C3HHeJ_P0062928 Henmt1 protein_coding protein_coding MGP_C3HHeJ_T0062929.1 MGP_C3HHeJ_G0027491.1 mouse_genomes_project 3 109977068 109997225 + MGP_C3HHeJ_P0062929 Henmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062930.1 MGP_C3HHeJ_G0027491.1 mouse_genomes_project 3 109977068 109997698 + MGP_C3HHeJ_P0062930 Henmt1 protein_coding protein_coding MGP_C3HHeJ_T0014160.1 MGP_C3HHeJ_G0012264.1 mouse_genomes_project 3 136852616 136853069 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060462.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53017909 53055575 + MGP_C3HHeJ_P0060462 Supt20 protein_coding protein_coding MGP_C3HHeJ_T0060463.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53017925 53055701 + MGP_C3HHeJ_P0060463 Supt20 protein_coding protein_coding MGP_C3HHeJ_T0060464.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53017925 53055701 + MGP_C3HHeJ_P0060464 Supt20 protein_coding protein_coding MGP_C3HHeJ_T0060465.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53017927 53055705 + MGP_C3HHeJ_P0060465 Supt20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060466.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53017937 53033278 + MGP_C3HHeJ_P0060466 Supt20 protein_coding protein_coding MGP_C3HHeJ_T0060467.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53017960 53039152 + Supt20 protein_coding retained_intron MGP_C3HHeJ_T0060468.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53017960 53021762 + Supt20 protein_coding retained_intron MGP_C3HHeJ_T0060469.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53017960 53022726 + Supt20 protein_coding retained_intron MGP_C3HHeJ_T0060470.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53017964 53033509 + MGP_C3HHeJ_P0060470 Supt20 protein_coding protein_coding MGP_C3HHeJ_T0060471.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53018207 53043235 + MGP_C3HHeJ_P0060471 Supt20 protein_coding protein_coding MGP_C3HHeJ_T0060472.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53018215 53055702 + MGP_C3HHeJ_P0060472 Supt20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060473.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53038637 53040750 + Supt20 protein_coding retained_intron MGP_C3HHeJ_T0100519.1 MGP_C3HHeJ_G0038713.1 mouse_genomes_project 3 4699731 4699848 - Gm23592 snoRNA snoRNA MGP_C3HHeJ_T0060294.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38841369 38869168 + MGP_C3HHeJ_P0060294 Larp1b protein_coding protein_coding MGP_C3HHeJ_T0060295.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38841807 38868632 + MGP_C3HHeJ_P0060295 Larp1b protein_coding protein_coding MGP_C3HHeJ_T0060296.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38841833 38853227 + MGP_C3HHeJ_P0060296 Larp1b protein_coding protein_coding MGP_C3HHeJ_T0060297.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38852630 38855033 + Larp1b protein_coding processed_transcript MGP_C3HHeJ_T0060298.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38853167 38868785 + MGP_C3HHeJ_P0060298 Larp1b protein_coding protein_coding MGP_C3HHeJ_T0060299.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38854978 38903787 + MGP_C3HHeJ_P0060299 Larp1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060300.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38862635 38868379 + Larp1b protein_coding processed_transcript MGP_C3HHeJ_T0060301.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38902497 38933765 + Larp1b protein_coding processed_transcript MGP_C3HHeJ_T0060302.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38915193 38933821 + Larp1b protein_coding retained_intron MGP_C3HHeJ_T0060303.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38917087 38932914 + Larp1b protein_coding processed_transcript MGP_C3HHeJ_T0060304.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38917765 38932350 + MGP_C3HHeJ_P0060304 Larp1b protein_coding protein_coding MGP_C3HHeJ_T0060305.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38926773 38927499 + Larp1b protein_coding processed_transcript MGP_C3HHeJ_T0060306.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38926792 38933785 + Larp1b protein_coding processed_transcript MGP_C3HHeJ_T0060307.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38929991 38931872 + Larp1b protein_coding processed_transcript MGP_C3HHeJ_T0099249.1 MGP_C3HHeJ_G0037443.1 mouse_genomes_project 3 47855208 47855315 + Gm23096 snRNA snRNA MGP_C3HHeJ_T0062120.1 MGP_C3HHeJ_G0027299.1 mouse_genomes_project 3 96064213 96091475 - MGP_C3HHeJ_P0062120 Prpf3 protein_coding protein_coding MGP_C3HHeJ_T0062121.1 MGP_C3HHeJ_G0027299.1 mouse_genomes_project 3 96064678 96069754 - MGP_C3HHeJ_P0062121 Prpf3 protein_coding protein_coding MGP_C3HHeJ_T0062122.1 MGP_C3HHeJ_G0027299.1 mouse_genomes_project 3 96064707 96085179 - Prpf3 protein_coding retained_intron MGP_C3HHeJ_T0062123.1 MGP_C3HHeJ_G0027299.1 mouse_genomes_project 3 96064711 96066897 - Prpf3 protein_coding retained_intron MGP_C3HHeJ_T0062124.1 MGP_C3HHeJ_G0027299.1 mouse_genomes_project 3 96064711 96091343 - MGP_C3HHeJ_P0062124 Prpf3 protein_coding protein_coding MGP_C3HHeJ_T0062125.1 MGP_C3HHeJ_G0027299.1 mouse_genomes_project 3 96070577 96080394 - Prpf3 protein_coding processed_transcript MGP_C3HHeJ_T0062126.1 MGP_C3HHeJ_G0027299.1 mouse_genomes_project 3 96079031 96081403 - Prpf3 protein_coding retained_intron MGP_C3HHeJ_T0062127.1 MGP_C3HHeJ_G0027299.1 mouse_genomes_project 3 96083047 96089237 - MGP_C3HHeJ_P0062127 Prpf3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062128.1 MGP_C3HHeJ_G0027299.1 mouse_genomes_project 3 96085140 96091371 - Prpf3 protein_coding retained_intron MGP_C3HHeJ_T0013932.1 MGP_C3HHeJ_G0012036.1 mouse_genomes_project 3 64813030 64815618 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062868.1 MGP_C3HHeJ_G0027481.1 mouse_genomes_project 3 109550190 109554751 + 1700013F07Rik protein_coding processed_transcript MGP_C3HHeJ_T0062869.1 MGP_C3HHeJ_G0027481.1 mouse_genomes_project 3 109554591 109560149 + 1700013F07Rik protein_coding processed_transcript MGP_C3HHeJ_T0062870.1 MGP_C3HHeJ_G0027481.1 mouse_genomes_project 3 109554598 109561791 + MGP_C3HHeJ_P0062870 1700013F07Rik protein_coding protein_coding MGP_C3HHeJ_T0014154.1 MGP_C3HHeJ_G0012258.1 mouse_genomes_project 3 134643760 134650200 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013929.1 MGP_C3HHeJ_G0012033.1 mouse_genomes_project 3 64430161 64430968 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063402.1 MGP_C3HHeJ_G0027579.1 mouse_genomes_project 3 131772459 131854271 - MGP_C3HHeJ_P0063402 Sec24b protein_coding protein_coding MGP_C3HHeJ_T0063403.1 MGP_C3HHeJ_G0027579.1 mouse_genomes_project 3 131773144 131774222 - Sec24b protein_coding retained_intron MGP_C3HHeJ_T0063404.1 MGP_C3HHeJ_G0027579.1 mouse_genomes_project 3 131773313 131773984 - Sec24b protein_coding processed_transcript MGP_C3HHeJ_T0063405.1 MGP_C3HHeJ_G0027579.1 mouse_genomes_project 3 131779587 131781331 - Sec24b protein_coding retained_intron MGP_C3HHeJ_T0063406.1 MGP_C3HHeJ_G0027579.1 mouse_genomes_project 3 131781245 131834269 - MGP_C3HHeJ_P0063406 Sec24b protein_coding protein_coding MGP_C3HHeJ_T0063407.1 MGP_C3HHeJ_G0027579.1 mouse_genomes_project 3 131800632 131834239 - Sec24b protein_coding retained_intron MGP_C3HHeJ_T0063408.1 MGP_C3HHeJ_G0027579.1 mouse_genomes_project 3 131800658 131834545 - MGP_C3HHeJ_P0063408 Sec24b protein_coding protein_coding MGP_C3HHeJ_T0063409.1 MGP_C3HHeJ_G0027579.1 mouse_genomes_project 3 131803029 131824915 - Sec24b protein_coding retained_intron MGP_C3HHeJ_T0063410.1 MGP_C3HHeJ_G0027579.1 mouse_genomes_project 3 131834661 131854917 - Sec24b protein_coding processed_transcript MGP_C3HHeJ_T0001206.1 MGP_C3HHeJ_G0001138.1 mouse_genomes_project 3 67969568 67972550 - TEC TEC MGP_C3HHeJ_T0007658.1 MGP_C3HHeJ_G0006260.1 mouse_genomes_project 3 145724941 145738080 + Gm33651 lincRNA lincRNA MGP_C3HHeJ_T0007568.1 MGP_C3HHeJ_G0006187.1 mouse_genomes_project 3 106588815 106590062 - Gm43848 lincRNA lincRNA MGP_C3HHeJ_T0064095.1 MGP_C3HHeJ_G0027706.1 mouse_genomes_project 3 157346595 157452720 + MGP_C3HHeJ_P0064095 protein_coding protein_coding MGP_C3HHeJ_T0064096.1 MGP_C3HHeJ_G0027706.1 mouse_genomes_project 3 157394120 157434010 + MGP_C3HHeJ_P0064096 protein_coding protein_coding MGP_C3HHeJ_T0064097.1 MGP_C3HHeJ_G0027706.1 mouse_genomes_project 3 157394867 157397835 + protein_coding processed_transcript MGP_C3HHeJ_T0064098.1 MGP_C3HHeJ_G0027706.1 mouse_genomes_project 3 157449258 157452717 + MGP_C3HHeJ_P0064098 protein_coding protein_coding MGP_C3HHeJ_T0063811.1 MGP_C3HHeJ_G0027660.1 mouse_genomes_project 3 147577600 147848964 + MGP_C3HHeJ_P0063811 Col24a1 protein_coding protein_coding MGP_C3HHeJ_T0063812.1 MGP_C3HHeJ_G0027660.1 mouse_genomes_project 3 147577655 147600161 + MGP_C3HHeJ_P0063812 Col24a1 protein_coding protein_coding MGP_C3HHeJ_T0063813.1 MGP_C3HHeJ_G0027660.1 mouse_genomes_project 3 147812065 147835590 + Col24a1 protein_coding processed_transcript MGP_C3HHeJ_T0063814.1 MGP_C3HHeJ_G0027660.1 mouse_genomes_project 3 147841928 147848959 + Col24a1 protein_coding retained_intron MGP_C3HHeJ_T0010442.1 MGP_C3HHeJ_G0008575.1 mouse_genomes_project 3 88083060 88083142 - Mir1905 miRNA miRNA MGP_C3HHeJ_T0001140.1 MGP_C3HHeJ_G0001074.1 mouse_genomes_project 3 45341391 45344114 - TEC TEC MGP_C3HHeJ_T0064050.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156564513 156569538 - MGP_C3HHeJ_P0064050 Rabggtb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064051.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156564515 156570236 - MGP_C3HHeJ_P0064051 Rabggtb protein_coding protein_coding MGP_C3HHeJ_T0064052.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156564515 156569372 - MGP_C3HHeJ_P0064052 Rabggtb protein_coding protein_coding MGP_C3HHeJ_T0064053.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156564517 156570154 - MGP_C3HHeJ_P0064053 Rabggtb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064054.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156564519 156570220 - MGP_C3HHeJ_P0064054 Rabggtb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064055.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156564680 156569308 - MGP_C3HHeJ_P0064055 Rabggtb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064056.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156564798 156569308 - MGP_C3HHeJ_P0064056 Rabggtb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064057.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156564798 156569308 - MGP_C3HHeJ_P0064057 Rabggtb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064058.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156564798 156569308 - MGP_C3HHeJ_P0064058 Rabggtb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064059.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156565301 156569260 - MGP_C3HHeJ_P0064059 Rabggtb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064060.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156566640 156570182 - MGP_C3HHeJ_P0064060 Rabggtb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064061.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156569212 156570158 - Rabggtb protein_coding processed_transcript MGP_C3HHeJ_T0062521.1 MGP_C3HHeJ_G0027396.1 mouse_genomes_project 3 104429513 104438938 - MGP_C3HHeJ_P0062521 protein_coding protein_coding MGP_C3HHeJ_T0013743.1 MGP_C3HHeJ_G0011847.1 mouse_genomes_project 3 2027432 2028398 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010452.1 MGP_C3HHeJ_G0008585.1 mouse_genomes_project 3 95961208 95961271 - Mir7014 miRNA miRNA MGP_C3HHeJ_T0007405.1 MGP_C3HHeJ_G0006063.1 mouse_genomes_project 3 31413164 31476197 - lincRNA lincRNA MGP_C3HHeJ_T0059700.1 MGP_C3HHeJ_G0026777.1 mouse_genomes_project 3 7576988 7638070 - MGP_C3HHeJ_P0059700 Fabp12 protein_coding protein_coding MGP_C3HHeJ_T0059701.1 MGP_C3HHeJ_G0026777.1 mouse_genomes_project 3 7578697 7587169 - MGP_C3HHeJ_P0059701 Fabp12 protein_coding protein_coding MGP_C3HHeJ_T0059702.1 MGP_C3HHeJ_G0026777.1 mouse_genomes_project 3 7578697 7587142 - MGP_C3HHeJ_P0059702 Fabp12 protein_coding protein_coding MGP_C3HHeJ_T0059703.1 MGP_C3HHeJ_G0026777.1 mouse_genomes_project 3 7578730 7638061 - MGP_C3HHeJ_P0059703 Fabp12 protein_coding protein_coding MGP_C3HHeJ_T0062579.1 MGP_C3HHeJ_G0027408.1 mouse_genomes_project 3 105218645 105291256 - MGP_C3HHeJ_P0062579 Lrig2 protein_coding protein_coding MGP_C3HHeJ_T0062580.1 MGP_C3HHeJ_G0027408.1 mouse_genomes_project 3 105283740 105344752 - MGP_C3HHeJ_P0062580 Lrig2 protein_coding protein_coding MGP_C3HHeJ_T0062581.1 MGP_C3HHeJ_G0027408.1 mouse_genomes_project 3 105283741 105344740 - MGP_C3HHeJ_P0062581 Lrig2 protein_coding protein_coding MGP_C3HHeJ_T0062582.1 MGP_C3HHeJ_G0027408.1 mouse_genomes_project 3 105286316 105310364 - Lrig2 protein_coding retained_intron MGP_C3HHeJ_T0062583.1 MGP_C3HHeJ_G0027408.1 mouse_genomes_project 3 105286874 105344768 - MGP_C3HHeJ_P0062583 Lrig2 protein_coding protein_coding MGP_C3HHeJ_T0062584.1 MGP_C3HHeJ_G0027408.1 mouse_genomes_project 3 105287090 105344830 - Lrig2 protein_coding retained_intron MGP_C3HHeJ_T0062585.1 MGP_C3HHeJ_G0027408.1 mouse_genomes_project 3 105288951 105292554 - Lrig2 protein_coding retained_intron MGP_C3HHeJ_T0062586.1 MGP_C3HHeJ_G0027408.1 mouse_genomes_project 3 105311765 105344573 - Lrig2 protein_coding retained_intron MGP_C3HHeJ_T0062587.1 MGP_C3HHeJ_G0027408.1 mouse_genomes_project 3 105320790 105321828 - Lrig2 protein_coding retained_intron MGP_C3HHeJ_T0100546.1 MGP_C3HHeJ_G0038740.1 mouse_genomes_project 3 74835452 74835587 + Gm25846 snoRNA snoRNA MGP_C3HHeJ_T0007557.1 MGP_C3HHeJ_G0006178.1 mouse_genomes_project 3 102431412 102433246 + Gm43134 lincRNA lincRNA MGP_C3HHeJ_T0062714.1 MGP_C3HHeJ_G0027439.1 mouse_genomes_project 3 107686798 107718784 - MGP_C3HHeJ_P0062714 Cd53 protein_coding protein_coding MGP_C3HHeJ_T0062298.1 MGP_C3HHeJ_G0027345.1 mouse_genomes_project 3 97908196 97959623 - MGP_C3HHeJ_P0062298 Chd1l protein_coding protein_coding MGP_C3HHeJ_T0062299.1 MGP_C3HHeJ_G0027345.1 mouse_genomes_project 3 97910088 97915410 - Chd1l protein_coding retained_intron MGP_C3HHeJ_T0062300.1 MGP_C3HHeJ_G0027345.1 mouse_genomes_project 3 97919332 97959612 - Chd1l protein_coding retained_intron MGP_C3HHeJ_T0010477.1 MGP_C3HHeJ_G0008610.1 mouse_genomes_project 3 142088344 142088466 + Mir7j miRNA miRNA MGP_C3HHeJ_T0060701.1 MGP_C3HHeJ_G0026982.1 mouse_genomes_project 3 62710793 62736861 + MGP_C3HHeJ_P0060701 Vmn2r1 protein_coding protein_coding MGP_C3HHeJ_T0001305.1 MGP_C3HHeJ_G0001237.1 mouse_genomes_project 3 129735464 129737428 + TEC TEC MGP_C3HHeJ_T0001306.1 MGP_C3HHeJ_G0001237.1 mouse_genomes_project 3 129735465 129737428 + TEC TEC MGP_C3HHeJ_T0061831.1 MGP_C3HHeJ_G0027249.1 mouse_genomes_project 3 93458465 93469157 + MGP_C3HHeJ_P0061831 S100a10 protein_coding protein_coding MGP_C3HHeJ_T0061832.1 MGP_C3HHeJ_G0027249.1 mouse_genomes_project 3 93458548 93465308 + S100a10 protein_coding retained_intron MGP_C3HHeJ_T0061833.1 MGP_C3HHeJ_G0027249.1 mouse_genomes_project 3 93464529 93468964 + MGP_C3HHeJ_P0061833 S100a10 protein_coding protein_coding MGP_C3HHeJ_T0014125.1 MGP_C3HHeJ_G0012229.1 mouse_genomes_project 3 123729076 123732181 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014158.1 MGP_C3HHeJ_G0012262.1 mouse_genomes_project 3 136110160 136110626 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101967.1 MGP_C3HHeJ_G0039932.1 mouse_genomes_project 3 94342384 94342570 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0060587.1 MGP_C3HHeJ_G0026953.1 mouse_genomes_project 3 56998781 57015746 + MGP_C3HHeJ_P0060587 Selt protein_coding unknown_likely_coding MGP_C3HHeJ_T0060588.1 MGP_C3HHeJ_G0026953.1 mouse_genomes_project 3 56998819 57010787 + Selt protein_coding retained_intron MGP_C3HHeJ_T0014162.1 MGP_C3HHeJ_G0012266.1 mouse_genomes_project 3 136855865 136857871 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013738.1 MGP_C3HHeJ_G0011842.1 mouse_genomes_project 3 897294 897610 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007450.1 MGP_C3HHeJ_G0006096.1 mouse_genomes_project 3 46927703 46940122 - Gm37190 lincRNA lincRNA MGP_C3HHeJ_T0014196.1 MGP_C3HHeJ_G0012300.1 mouse_genomes_project 3 146823893 146824455 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059660.1 MGP_C3HHeJ_G0026764.1 mouse_genomes_project 3 4760315 4809253 - MGP_C3HHeJ_P0059660 Il7 protein_coding protein_coding MGP_C3HHeJ_T0059661.1 MGP_C3HHeJ_G0026764.1 mouse_genomes_project 3 4763442 4808419 - MGP_C3HHeJ_P0059661 Il7 protein_coding protein_coding MGP_C3HHeJ_T0059662.1 MGP_C3HHeJ_G0026764.1 mouse_genomes_project 3 4763497 4809286 - MGP_C3HHeJ_P0059662 Il7 protein_coding protein_coding MGP_C3HHeJ_T0059663.1 MGP_C3HHeJ_G0026764.1 mouse_genomes_project 3 4764249 4809267 - Il7 protein_coding processed_transcript MGP_C3HHeJ_T0007369.1 MGP_C3HHeJ_G0006037.1 mouse_genomes_project 3 7057733 7091150 + Gm16337 lincRNA lincRNA MGP_C3HHeJ_T0060165.1 MGP_C3HHeJ_G0026876.1 mouse_genomes_project 3 34393382 34400617 - MGP_C3HHeJ_P0060165 Ccna2 protein_coding protein_coding MGP_C3HHeJ_T0060166.1 MGP_C3HHeJ_G0026876.1 mouse_genomes_project 3 34394162 34395379 - Ccna2 protein_coding processed_transcript MGP_C3HHeJ_T0060167.1 MGP_C3HHeJ_G0026876.1 mouse_genomes_project 3 34394506 34400018 - MGP_C3HHeJ_P0060167 Ccna2 protein_coding protein_coding MGP_C3HHeJ_T0060168.1 MGP_C3HHeJ_G0026876.1 mouse_genomes_project 3 34394506 34400394 - MGP_C3HHeJ_P0060168 Ccna2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060169.1 MGP_C3HHeJ_G0026876.1 mouse_genomes_project 3 34398913 34400431 - Ccna2 protein_coding retained_intron MGP_C3HHeJ_T0062195.1 MGP_C3HHeJ_G0027316.1 mouse_genomes_project 3 96498362 96523140 + MGP_C3HHeJ_P0062195 Hist2h3c2 protein_coding protein_coding MGP_C3HHeJ_T0007606.1 MGP_C3HHeJ_G0006214.1 mouse_genomes_project 3 125794509 125875919 + Gm43731 lincRNA lincRNA MGP_C3HHeJ_T0013994.1 MGP_C3HHeJ_G0012098.1 mouse_genomes_project 3 85327550 85328025 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014056.1 MGP_C3HHeJ_G0012160.1 mouse_genomes_project 3 101922591 101923151 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013999.1 MGP_C3HHeJ_G0012103.1 mouse_genomes_project 3 86489621 86490150 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060774.1 MGP_C3HHeJ_G0027000.1 mouse_genomes_project 3 66411920 66433508 + MGP_C3HHeJ_P0060774 Mfsd1 protein_coding protein_coding MGP_C3HHeJ_T0060775.1 MGP_C3HHeJ_G0027000.1 mouse_genomes_project 3 66413925 66425479 + Mfsd1 protein_coding processed_transcript MGP_C3HHeJ_T0101949.1 MGP_C3HHeJ_G0039914.1 mouse_genomes_project 3 63717711 63718287 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100554.1 MGP_C3HHeJ_G0038748.1 mouse_genomes_project 3 85690666 85690797 - Gm26343 snoRNA snoRNA MGP_C3HHeJ_T0062404.1 MGP_C3HHeJ_G0027375.1 mouse_genomes_project 3 101937569 101950552 - MGP_C3HHeJ_P0062404 Cd2 protein_coding protein_coding MGP_C3HHeJ_T0062405.1 MGP_C3HHeJ_G0027375.1 mouse_genomes_project 3 101937578 101942052 - Cd2 protein_coding retained_intron MGP_C3HHeJ_T0062406.1 MGP_C3HHeJ_G0027375.1 mouse_genomes_project 3 101945667 101950492 - Cd2 protein_coding retained_intron MGP_C3HHeJ_T0098404.1 MGP_C3HHeJ_G0036610.1 mouse_genomes_project 3 23127313 23132649 - Gm37573 sense_intronic sense_intronic MGP_C3HHeJ_T0013868.1 MGP_C3HHeJ_G0011972.1 mouse_genomes_project 3 43679257 43679618 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007472.1 MGP_C3HHeJ_G0006113.1 mouse_genomes_project 3 56520136 56567886 + 4921539H07Rik lincRNA lincRNA MGP_C3HHeJ_T0007474.1 MGP_C3HHeJ_G0006113.1 mouse_genomes_project 3 56566744 56570429 + 4921539H07Rik lincRNA lincRNA MGP_C3HHeJ_T0017756.1 MGP_C3HHeJ_G0015278.1 mouse_genomes_project 3 106836617 106861676 + Gm42890 processed_transcript retained_intron MGP_C3HHeJ_T0017757.1 MGP_C3HHeJ_G0015278.1 mouse_genomes_project 3 106843230 106853521 + Gm42890 processed_transcript retained_intron MGP_C3HHeJ_T0007541.1 MGP_C3HHeJ_G0006163.1 mouse_genomes_project 3 96523707 96529780 + Gm42743 lincRNA lincRNA MGP_C3HHeJ_T0098403.1 MGP_C3HHeJ_G0036609.1 mouse_genomes_project 3 16998738 16999334 + BC002189 sense_intronic sense_intronic MGP_C3HHeJ_T0011435.1 MGP_C3HHeJ_G0009568.1 mouse_genomes_project 3 11425286 11425567 - Gm22026 misc_RNA misc_RNA MGP_C3HHeJ_T0001315.1 MGP_C3HHeJ_G0001246.1 mouse_genomes_project 3 132710351 132711062 + TEC TEC MGP_C3HHeJ_T0001145.1 MGP_C3HHeJ_G0001079.1 mouse_genomes_project 3 48842165 48846230 - TEC TEC MGP_C3HHeJ_T0061808.1 MGP_C3HHeJ_G0027233.1 mouse_genomes_project 3 92710470 92711808 - MGP_C3HHeJ_P0061808 Lce1l protein_coding protein_coding MGP_C3HHeJ_T0004254.1 MGP_C3HHeJ_G0003724.1 mouse_genomes_project 3 106299247 106309737 - Kcnd3os antisense antisense MGP_C3HHeJ_T0004255.1 MGP_C3HHeJ_G0003724.1 mouse_genomes_project 3 106306143 106310966 - Kcnd3os antisense antisense MGP_C3HHeJ_T0004257.1 MGP_C3HHeJ_G0003726.1 mouse_genomes_project 3 107859923 108034368 - Gm27008 antisense antisense MGP_C3HHeJ_T0004258.1 MGP_C3HHeJ_G0003726.1 mouse_genomes_project 3 107874662 108037283 - Gm27008 antisense antisense MGP_C3HHeJ_T0062992.1 MGP_C3HHeJ_G0027506.1 mouse_genomes_project 3 117194817 117198704 - Slc30a7 protein_coding processed_transcript MGP_C3HHeJ_T0062993.1 MGP_C3HHeJ_G0027506.1 mouse_genomes_project 3 117194817 117265409 - MGP_C3HHeJ_P0062993 Slc30a7 protein_coding protein_coding MGP_C3HHeJ_T0062994.1 MGP_C3HHeJ_G0027506.1 mouse_genomes_project 3 117241178 117249578 - Slc30a7 protein_coding processed_transcript MGP_C3HHeJ_T0062995.1 MGP_C3HHeJ_G0027506.1 mouse_genomes_project 3 117248579 117250844 - Slc30a7 protein_coding retained_intron MGP_C3HHeJ_T0061992.1 MGP_C3HHeJ_G0027278.1 mouse_genomes_project 3 95352237 95392009 - MGP_C3HHeJ_P0061992 Gabpb2 protein_coding protein_coding MGP_C3HHeJ_T0061993.1 MGP_C3HHeJ_G0027278.1 mouse_genomes_project 3 95356437 95361794 - Gabpb2 protein_coding retained_intron MGP_C3HHeJ_T0061994.1 MGP_C3HHeJ_G0027278.1 mouse_genomes_project 3 95356573 95391796 - Gabpb2 protein_coding retained_intron MGP_C3HHeJ_T0061995.1 MGP_C3HHeJ_G0027278.1 mouse_genomes_project 3 95367315 95392003 - Gabpb2 protein_coding retained_intron MGP_C3HHeJ_T0061996.1 MGP_C3HHeJ_G0027278.1 mouse_genomes_project 3 95369900 95392003 - Gabpb2 protein_coding retained_intron MGP_C3HHeJ_T0061997.1 MGP_C3HHeJ_G0027278.1 mouse_genomes_project 3 95373343 95391841 - MGP_C3HHeJ_P0061997 Gabpb2 protein_coding protein_coding MGP_C3HHeJ_T0061998.1 MGP_C3HHeJ_G0027278.1 mouse_genomes_project 3 95389322 95391781 - Gabpb2 protein_coding processed_transcript MGP_C3HHeJ_T0001188.1 MGP_C3HHeJ_G0001120.1 mouse_genomes_project 3 54510229 54513845 - TEC TEC MGP_C3HHeJ_T0004282.1 MGP_C3HHeJ_G0003738.1 mouse_genomes_project 3 123044305 123049697 + A530020G20Rik antisense antisense MGP_C3HHeJ_T0004283.1 MGP_C3HHeJ_G0003738.1 mouse_genomes_project 3 123044315 123045170 + A530020G20Rik antisense antisense MGP_C3HHeJ_T0004284.1 MGP_C3HHeJ_G0003738.1 mouse_genomes_project 3 123044365 123047107 + A530020G20Rik antisense antisense MGP_C3HHeJ_T0061949.1 MGP_C3HHeJ_G0027270.1 mouse_genomes_project 3 95216142 95267886 - MGP_C3HHeJ_P0061949 Pip5k1a protein_coding protein_coding MGP_C3HHeJ_T0061950.1 MGP_C3HHeJ_G0027270.1 mouse_genomes_project 3 95216155 95267941 - MGP_C3HHeJ_P0061950 Pip5k1a protein_coding protein_coding MGP_C3HHeJ_T0061951.1 MGP_C3HHeJ_G0027270.1 mouse_genomes_project 3 95216157 95267867 - MGP_C3HHeJ_P0061951 Pip5k1a protein_coding protein_coding MGP_C3HHeJ_T0061952.1 MGP_C3HHeJ_G0027270.1 mouse_genomes_project 3 95216181 95267790 - MGP_C3HHeJ_P0061952 Pip5k1a protein_coding protein_coding MGP_C3HHeJ_T0061953.1 MGP_C3HHeJ_G0027270.1 mouse_genomes_project 3 95228350 95237657 - Pip5k1a protein_coding processed_transcript MGP_C3HHeJ_T0061954.1 MGP_C3HHeJ_G0027270.1 mouse_genomes_project 3 95237245 95242376 - Pip5k1a protein_coding retained_intron MGP_C3HHeJ_T0061955.1 MGP_C3HHeJ_G0027270.1 mouse_genomes_project 3 95256320 95267834 - Pip5k1a protein_coding processed_transcript MGP_C3HHeJ_T0100573.1 MGP_C3HHeJ_G0038767.1 mouse_genomes_project 3 116638796 116638928 + Gm22337 snoRNA snoRNA MGP_C3HHeJ_T0063539.1 MGP_C3HHeJ_G0027606.1 mouse_genomes_project 3 137302077 137320163 - MGP_C3HHeJ_P0063539 Cisd2 protein_coding protein_coding MGP_C3HHeJ_T0063540.1 MGP_C3HHeJ_G0027606.1 mouse_genomes_project 3 137305671 137319645 - MGP_C3HHeJ_P0063540 Cisd2 protein_coding protein_coding MGP_C3HHeJ_T0063541.1 MGP_C3HHeJ_G0027606.1 mouse_genomes_project 3 137316189 137319642 - Cisd2 protein_coding retained_intron MGP_C3HHeJ_T0063542.1 MGP_C3HHeJ_G0027606.1 mouse_genomes_project 3 137317095 137319317 - Cisd2 protein_coding processed_transcript MGP_C3HHeJ_T0062322.1 MGP_C3HHeJ_G0027350.1 mouse_genomes_project 3 98267763 98289854 + MGP_C3HHeJ_P0062322 Sec22b protein_coding protein_coding MGP_C3HHeJ_T0062323.1 MGP_C3HHeJ_G0027350.1 mouse_genomes_project 3 98267789 98288426 + MGP_C3HHeJ_P0062323 Sec22b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062324.1 MGP_C3HHeJ_G0027350.1 mouse_genomes_project 3 98267798 98274238 + MGP_C3HHeJ_P0062324 Sec22b protein_coding protein_coding MGP_C3HHeJ_T0062325.1 MGP_C3HHeJ_G0027350.1 mouse_genomes_project 3 98267800 98281785 + MGP_C3HHeJ_P0062325 Sec22b protein_coding protein_coding MGP_C3HHeJ_T0062326.1 MGP_C3HHeJ_G0027350.1 mouse_genomes_project 3 98273527 98274238 + Sec22b protein_coding processed_transcript MGP_C3HHeJ_T0014040.1 MGP_C3HHeJ_G0012144.1 mouse_genomes_project 3 97459511 97460114 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004159.1 MGP_C3HHeJ_G0003656.1 mouse_genomes_project 3 36759986 36774048 - C230034O21Rik antisense antisense MGP_C3HHeJ_T0007430.1 MGP_C3HHeJ_G0006085.1 mouse_genomes_project 3 36235099 36239344 + Gm42920 lincRNA lincRNA MGP_C3HHeJ_T0014020.1 MGP_C3HHeJ_G0012124.1 mouse_genomes_project 3 93132329 93133868 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007656.1 MGP_C3HHeJ_G0006258.1 mouse_genomes_project 3 145546066 145548198 + 1700001N15Rik lincRNA lincRNA MGP_C3HHeJ_T0011458.1 MGP_C3HHeJ_G0009591.1 mouse_genomes_project 3 157798534 157798645 + Gm26456 misc_RNA misc_RNA MGP_C3HHeJ_T0100565.1 MGP_C3HHeJ_G0038759.1 mouse_genomes_project 3 99680206 99680323 - Gm24216 snoRNA snoRNA MGP_C3HHeJ_T0063691.1 MGP_C3HHeJ_G0027635.1 mouse_genomes_project 3 141241033 141751169 + MGP_C3HHeJ_P0063691 Stpg2 protein_coding protein_coding MGP_C3HHeJ_T0063692.1 MGP_C3HHeJ_G0027635.1 mouse_genomes_project 3 141241232 141751858 + MGP_C3HHeJ_P0063692 Stpg2 protein_coding protein_coding MGP_C3HHeJ_T0014087.1 MGP_C3HHeJ_G0012191.1 mouse_genomes_project 3 110982485 110982969 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007576.1 MGP_C3HHeJ_G0006192.1 mouse_genomes_project 3 108787309 108800566 - Gm36211 lincRNA lincRNA MGP_C3HHeJ_T0014003.1 MGP_C3HHeJ_G0012107.1 mouse_genomes_project 3 87968772 87970077 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063227.1 MGP_C3HHeJ_G0027550.1 mouse_genomes_project 3 124967015 124985502 - MGP_C3HHeJ_P0063227 Mettl14 protein_coding protein_coding MGP_C3HHeJ_T0063228.1 MGP_C3HHeJ_G0027550.1 mouse_genomes_project 3 124967021 124985606 - MGP_C3HHeJ_P0063228 Mettl14 protein_coding protein_coding MGP_C3HHeJ_T0063229.1 MGP_C3HHeJ_G0027550.1 mouse_genomes_project 3 124968226 124974160 - MGP_C3HHeJ_P0063229 Mettl14 protein_coding protein_coding MGP_C3HHeJ_T0063230.1 MGP_C3HHeJ_G0027550.1 mouse_genomes_project 3 124985391 124985773 - Mettl14 protein_coding retained_intron MGP_C3HHeJ_T0061209.1 MGP_C3HHeJ_G0027102.1 mouse_genomes_project 3 87775105 87822223 - MGP_C3HHeJ_P0061209 Gm38392 protein_coding protein_coding MGP_C3HHeJ_T0061210.1 MGP_C3HHeJ_G0027102.1 mouse_genomes_project 3 87776920 87822223 - MGP_C3HHeJ_P0061210 Gm38392 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060863.1 MGP_C3HHeJ_G0027023.1 mouse_genomes_project 3 74630990 74672208 - MGP_C3HHeJ_P0060863 Pdcd10 protein_coding protein_coding MGP_C3HHeJ_T0060864.1 MGP_C3HHeJ_G0027023.1 mouse_genomes_project 3 74631522 74656762 - MGP_C3HHeJ_P0060864 Pdcd10 protein_coding unknown_likely_coding MGP_C3HHeJ_T0060865.1 MGP_C3HHeJ_G0027023.1 mouse_genomes_project 3 74632462 74672163 - MGP_C3HHeJ_P0060865 Pdcd10 protein_coding protein_coding MGP_C3HHeJ_T0060866.1 MGP_C3HHeJ_G0027023.1 mouse_genomes_project 3 74643847 74672111 - MGP_C3HHeJ_P0060866 Pdcd10 protein_coding protein_coding MGP_C3HHeJ_T0060867.1 MGP_C3HHeJ_G0027023.1 mouse_genomes_project 3 74648353 74672189 - Pdcd10 protein_coding retained_intron MGP_C3HHeJ_T0062915.1 MGP_C3HHeJ_G0027490.1 mouse_genomes_project 3 109937923 109948065 - MGP_C3HHeJ_P0062915 Prpf38b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062916.1 MGP_C3HHeJ_G0027490.1 mouse_genomes_project 3 109937925 109948096 - MGP_C3HHeJ_P0062916 Prpf38b protein_coding protein_coding MGP_C3HHeJ_T0062917.1 MGP_C3HHeJ_G0027490.1 mouse_genomes_project 3 109938265 109947837 - MGP_C3HHeJ_P0062917 Prpf38b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062918.1 MGP_C3HHeJ_G0027490.1 mouse_genomes_project 3 109939379 109941955 - Prpf38b protein_coding retained_intron MGP_C3HHeJ_T0062919.1 MGP_C3HHeJ_G0027490.1 mouse_genomes_project 3 109939594 109942488 - Prpf38b protein_coding processed_transcript MGP_C3HHeJ_T0062920.1 MGP_C3HHeJ_G0027490.1 mouse_genomes_project 3 109939739 109944350 - Prpf38b protein_coding processed_transcript MGP_C3HHeJ_T0062921.1 MGP_C3HHeJ_G0027490.1 mouse_genomes_project 3 109942930 109948079 - Prpf38b protein_coding retained_intron MGP_C3HHeJ_T0062922.1 MGP_C3HHeJ_G0027490.1 mouse_genomes_project 3 109942933 109946998 - Prpf38b protein_coding retained_intron MGP_C3HHeJ_T0059828.1 MGP_C3HHeJ_G0026813.1 mouse_genomes_project 3 17458466 17491695 - MGP_C3HHeJ_P0059828 Gyg protein_coding protein_coding MGP_C3HHeJ_T0059829.1 MGP_C3HHeJ_G0026813.1 mouse_genomes_project 3 17458469 17491474 - MGP_C3HHeJ_P0059829 Gyg protein_coding protein_coding MGP_C3HHeJ_T0059830.1 MGP_C3HHeJ_G0026813.1 mouse_genomes_project 3 17458529 17491447 - MGP_C3HHeJ_P0059830 Gyg protein_coding protein_coding MGP_C3HHeJ_T0059831.1 MGP_C3HHeJ_G0026813.1 mouse_genomes_project 3 17458938 17459926 - Gyg protein_coding retained_intron MGP_C3HHeJ_T0098425.1 MGP_C3HHeJ_G0036630.1 mouse_genomes_project 3 102258794 102259546 - Gm42937 sense_intronic sense_intronic MGP_C3HHeJ_T0007380.1 MGP_C3HHeJ_G0006045.1 mouse_genomes_project 3 14586615 14592345 - Gm30340 lincRNA lincRNA MGP_C3HHeJ_T0014101.1 MGP_C3HHeJ_G0012205.1 mouse_genomes_project 3 114928674 114928932 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062735.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108427241 108477911 - MGP_C3HHeJ_P0062735 Slc6a17 protein_coding protein_coding MGP_C3HHeJ_T0062736.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108427246 108477911 - MGP_C3HHeJ_P0062736 Slc6a17 protein_coding protein_coding MGP_C3HHeJ_T0062737.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108427247 108460425 - MGP_C3HHeJ_P0062737 Slc6a17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062738.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108427249 108428404 - Slc6a17 protein_coding processed_transcript MGP_C3HHeJ_T0062739.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108441982 108477642 - Slc6a17 protein_coding processed_transcript MGP_C3HHeJ_T0062740.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108449665 108453091 - Slc6a17 protein_coding processed_transcript MGP_C3HHeJ_T0062741.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108449667 108477911 - Slc6a17 protein_coding retained_intron MGP_C3HHeJ_T0062742.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108455609 108477838 - Slc6a17 protein_coding processed_transcript MGP_C3HHeJ_T0062743.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108455655 108477230 - MGP_C3HHeJ_P0062743 Slc6a17 protein_coding protein_coding MGP_C3HHeJ_T0062744.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108460565 108477220 - Slc6a17 protein_coding processed_transcript MGP_C3HHeJ_T0060104.1 MGP_C3HHeJ_G0026864.1 mouse_genomes_project 3 31787288 31812990 - MGP_C3HHeJ_P0060104 Dnajc19 protein_coding protein_coding MGP_C3HHeJ_T0060105.1 MGP_C3HHeJ_G0026864.1 mouse_genomes_project 3 31808956 31812999 - MGP_C3HHeJ_P0060105 Dnajc19 protein_coding protein_coding MGP_C3HHeJ_T0060106.1 MGP_C3HHeJ_G0026864.1 mouse_genomes_project 3 31809001 31812988 - MGP_C3HHeJ_P0060106 Dnajc19 protein_coding protein_coding MGP_C3HHeJ_T0060107.1 MGP_C3HHeJ_G0026864.1 mouse_genomes_project 3 31809031 31811858 - Dnajc19 protein_coding retained_intron MGP_C3HHeJ_T0060108.1 MGP_C3HHeJ_G0026864.1 mouse_genomes_project 3 31809111 31812940 - MGP_C3HHeJ_P0060108 Dnajc19 protein_coding protein_coding MGP_C3HHeJ_T0099254.1 MGP_C3HHeJ_G0037448.1 mouse_genomes_project 3 56698080 56698187 - Gm26166 snRNA snRNA MGP_C3HHeJ_T0060868.1 MGP_C3HHeJ_G0027024.1 mouse_genomes_project 3 74672898 74761754 + MGP_C3HHeJ_P0060868 Serpini1 protein_coding protein_coding MGP_C3HHeJ_T0060869.1 MGP_C3HHeJ_G0027024.1 mouse_genomes_project 3 74672898 74734722 + MGP_C3HHeJ_P0060869 Serpini1 protein_coding protein_coding MGP_C3HHeJ_T0060870.1 MGP_C3HHeJ_G0027024.1 mouse_genomes_project 3 74672912 74729696 + Serpini1 protein_coding processed_transcript MGP_C3HHeJ_T0060871.1 MGP_C3HHeJ_G0027024.1 mouse_genomes_project 3 74672929 74734214 + Serpini1 protein_coding retained_intron MGP_C3HHeJ_T0062222.1 MGP_C3HHeJ_G0027329.1 mouse_genomes_project 3 96934032 96944022 + Pex11b protein_coding processed_transcript MGP_C3HHeJ_T0062223.1 MGP_C3HHeJ_G0027329.1 mouse_genomes_project 3 96934086 96944022 + MGP_C3HHeJ_P0062223 Pex11b protein_coding protein_coding MGP_C3HHeJ_T0062225.1 MGP_C3HHeJ_G0027329.1 mouse_genomes_project 3 96934156 96942689 + MGP_C3HHeJ_P0062225 Pex11b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062226.1 MGP_C3HHeJ_G0027329.1 mouse_genomes_project 3 96934309 96935610 + Pex11b protein_coding retained_intron MGP_C3HHeJ_T0062227.1 MGP_C3HHeJ_G0027329.1 mouse_genomes_project 3 96934328 96943382 + MGP_C3HHeJ_P0062227 Pex11b protein_coding protein_coding MGP_C3HHeJ_T0062228.1 MGP_C3HHeJ_G0027329.1 mouse_genomes_project 3 96934489 96943382 + MGP_C3HHeJ_P0062228 Pex11b protein_coding protein_coding MGP_C3HHeJ_T0062229.1 MGP_C3HHeJ_G0027329.1 mouse_genomes_project 3 96935709 96942456 + Pex11b protein_coding retained_intron MGP_C3HHeJ_T0011434.1 MGP_C3HHeJ_G0009567.1 mouse_genomes_project 3 11241564 11241859 + Gm25981 misc_RNA misc_RNA MGP_C3HHeJ_T0014004.1 MGP_C3HHeJ_G0012108.1 mouse_genomes_project 3 88124678 88127149 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060857.1 MGP_C3HHeJ_G0027021.1 mouse_genomes_project 3 74360738 74389245 - MGP_C3HHeJ_P0060857 Serpini2 protein_coding protein_coding MGP_C3HHeJ_T0013860.1 MGP_C3HHeJ_G0011964.1 mouse_genomes_project 3 40273954 40274102 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061894.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94955848 95000879 + MGP_C3HHeJ_P0061894 Pogz protein_coding protein_coding MGP_C3HHeJ_T0061895.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94955978 94980202 + Pogz protein_coding processed_transcript MGP_C3HHeJ_T0061896.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94955994 94985125 + Pogz protein_coding retained_intron MGP_C3HHeJ_T0061897.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94955994 95000877 + MGP_C3HHeJ_P0061897 Pogz protein_coding protein_coding MGP_C3HHeJ_T0061898.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94955994 94998885 + MGP_C3HHeJ_P0061898 Pogz protein_coding protein_coding MGP_C3HHeJ_T0061899.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94955994 94999428 + MGP_C3HHeJ_P0061899 Pogz protein_coding protein_coding MGP_C3HHeJ_T0061900.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94982336 94983159 + Pogz protein_coding retained_intron MGP_C3HHeJ_T0061901.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94983127 94990850 + MGP_C3HHeJ_P0061901 Pogz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061902.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94989859 94992299 + Pogz protein_coding processed_transcript MGP_C3HHeJ_T0061903.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94996207 94997519 + Pogz protein_coding retained_intron MGP_C3HHeJ_T0007510.1 MGP_C3HHeJ_G0006144.1 mouse_genomes_project 3 82843905 82863505 - 1700028M03Rik lincRNA lincRNA MGP_C3HHeJ_T0063355.1 MGP_C3HHeJ_G0027569.1 mouse_genomes_project 3 131019194 131087850 - MGP_C3HHeJ_P0063355 Enpep protein_coding protein_coding MGP_C3HHeJ_T0063356.1 MGP_C3HHeJ_G0027569.1 mouse_genomes_project 3 131020296 131087394 - MGP_C3HHeJ_P0063356 Enpep protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063357.1 MGP_C3HHeJ_G0027569.1 mouse_genomes_project 3 131020298 131087611 - MGP_C3HHeJ_P0063357 Enpep protein_coding unknown_likely_coding MGP_C3HHeJ_T0063358.1 MGP_C3HHeJ_G0027569.1 mouse_genomes_project 3 131028457 131034794 - Enpep protein_coding retained_intron MGP_C3HHeJ_T0063359.1 MGP_C3HHeJ_G0027569.1 mouse_genomes_project 3 131028628 131064325 - MGP_C3HHeJ_P0063359 Enpep protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063360.1 MGP_C3HHeJ_G0027569.1 mouse_genomes_project 3 131052558 131087850 - Enpep protein_coding retained_intron MGP_C3HHeJ_T0004164.1 MGP_C3HHeJ_G0003661.1 mouse_genomes_project 3 50202877 50211923 + Gm20089 antisense antisense MGP_C3HHeJ_T0013971.1 MGP_C3HHeJ_G0012075.1 mouse_genomes_project 3 76004080 76004419 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014093.1 MGP_C3HHeJ_G0012197.1 mouse_genomes_project 3 112886496 112886890 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007586.1 MGP_C3HHeJ_G0006201.1 mouse_genomes_project 3 117470741 117473047 + Gm43202 lincRNA lincRNA MGP_C3HHeJ_T0001299.1 MGP_C3HHeJ_G0001231.1 mouse_genomes_project 3 128911558 128917523 - TEC TEC MGP_C3HHeJ_T0063717.1 MGP_C3HHeJ_G0027640.1 mouse_genomes_project 3 144566910 144611475 + MGP_C3HHeJ_P0063717 Gbp5 protein_coding protein_coding MGP_C3HHeJ_T0063718.1 MGP_C3HHeJ_G0027640.1 mouse_genomes_project 3 144584725 144601790 + Gbp5 protein_coding processed_transcript MGP_C3HHeJ_T0063719.1 MGP_C3HHeJ_G0027640.1 mouse_genomes_project 3 144593480 144598031 + Gbp5 protein_coding retained_intron MGP_C3HHeJ_T0013795.1 MGP_C3HHeJ_G0011899.1 mouse_genomes_project 3 16033456 16033745 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007512.1 MGP_C3HHeJ_G0006146.1 mouse_genomes_project 3 84778446 84809075 - Gm42813 lincRNA lincRNA MGP_C3HHeJ_T0004158.1 MGP_C3HHeJ_G0003655.1 mouse_genomes_project 3 35182801 35198181 - Fgf2os antisense antisense MGP_C3HHeJ_T0004195.1 MGP_C3HHeJ_G0003684.1 mouse_genomes_project 3 83082977 83099038 - Gm26771 antisense antisense MGP_C3HHeJ_T0001162.1 MGP_C3HHeJ_G0001095.1 mouse_genomes_project 3 50049137 50050158 - TEC TEC MGP_C3HHeJ_T0007481.1 MGP_C3HHeJ_G0006120.1 mouse_genomes_project 3 66399839 66402096 - 4930402C01Rik lincRNA lincRNA MGP_C3HHeJ_T0014157.1 MGP_C3HHeJ_G0012261.1 mouse_genomes_project 3 136016493 136016934 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098581.1 MGP_C3HHeJ_G0036776.1 mouse_genomes_project 3 63760329 64035691 + sense_overlapping sense_overlapping MGP_C3HHeJ_T0001255.1 MGP_C3HHeJ_G0001187.1 mouse_genomes_project 3 112863103 112864898 + TEC TEC MGP_C3HHeJ_T0010476.1 MGP_C3HHeJ_G0008609.1 mouse_genomes_project 3 140536015 140536080 + Mir1956 miRNA miRNA MGP_C3HHeJ_T0001208.1 MGP_C3HHeJ_G0001140.1 mouse_genomes_project 3 72207447 72209572 + TEC TEC MGP_C3HHeJ_T0007486.1 MGP_C3HHeJ_G0006125.1 mouse_genomes_project 3 72107009 72240614 + lincRNA lincRNA MGP_C3HHeJ_T0007487.1 MGP_C3HHeJ_G0006125.1 mouse_genomes_project 3 72107044 72654364 + lincRNA lincRNA MGP_C3HHeJ_T0014047.1 MGP_C3HHeJ_G0012151.1 mouse_genomes_project 3 100022018 100022252 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004202.1 MGP_C3HHeJ_G0003689.1 mouse_genomes_project 3 88236471 88237839 - Gm43714 antisense antisense MGP_C3HHeJ_T0059792.1 MGP_C3HHeJ_G0026808.1 mouse_genomes_project 3 16955839 17004938 + MGP_C3HHeJ_P0059792 Trim55 protein_coding protein_coding MGP_C3HHeJ_T0059793.1 MGP_C3HHeJ_G0026808.1 mouse_genomes_project 3 16955873 16961403 + Trim55 protein_coding processed_transcript MGP_C3HHeJ_T0001149.1 MGP_C3HHeJ_G0001083.1 mouse_genomes_project 3 49142251 49143544 - TEC TEC MGP_C3HHeJ_T0060826.1 MGP_C3HHeJ_G0027012.1 mouse_genomes_project 3 68169165 68431301 + MGP_C3HHeJ_P0060826 Ppm1l protein_coding protein_coding MGP_C3HHeJ_T0060827.1 MGP_C3HHeJ_G0027012.1 mouse_genomes_project 3 68364632 68365383 + Ppm1l protein_coding retained_intron MGP_C3HHeJ_T0060828.1 MGP_C3HHeJ_G0027012.1 mouse_genomes_project 3 68410872 68423413 + Ppm1l protein_coding processed_transcript MGP_C3HHeJ_T0060829.1 MGP_C3HHeJ_G0027012.1 mouse_genomes_project 3 68419499 68423594 + Ppm1l protein_coding retained_intron MGP_C3HHeJ_T0100531.1 MGP_C3HHeJ_G0038725.1 mouse_genomes_project 3 37702776 37702861 - Gm23831 snoRNA snoRNA MGP_C3HHeJ_T0060955.1 MGP_C3HHeJ_G0027041.1 mouse_genomes_project 3 81228623 81246017 + Asic5 protein_coding processed_transcript MGP_C3HHeJ_T0060956.1 MGP_C3HHeJ_G0027041.1 mouse_genomes_project 3 81243272 81267638 + MGP_C3HHeJ_P0060956 Asic5 protein_coding protein_coding MGP_C3HHeJ_T0013953.1 MGP_C3HHeJ_G0012057.1 mouse_genomes_project 3 68839317 68839506 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099266.1 MGP_C3HHeJ_G0037460.1 mouse_genomes_project 3 79041254 79041357 + Gm26420 snRNA snRNA MGP_C3HHeJ_T0060667.1 MGP_C3HHeJ_G0026975.1 mouse_genomes_project 3 61004648 61048674 - MGP_C3HHeJ_P0060667 Dhx36 protein_coding protein_coding MGP_C3HHeJ_T0060668.1 MGP_C3HHeJ_G0026975.1 mouse_genomes_project 3 61007280 61009223 - Dhx36 protein_coding retained_intron MGP_C3HHeJ_T0060669.1 MGP_C3HHeJ_G0026975.1 mouse_genomes_project 3 61021337 61026519 - Dhx36 protein_coding retained_intron MGP_C3HHeJ_T0060670.1 MGP_C3HHeJ_G0026975.1 mouse_genomes_project 3 61038603 61042804 - Dhx36 protein_coding retained_intron MGP_C3HHeJ_T0010451.1 MGP_C3HHeJ_G0008584.1 mouse_genomes_project 3 95302503 95302630 - Mir8099-1 miRNA miRNA MGP_C3HHeJ_T0059935.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27513076 27585089 - MGP_C3HHeJ_P0059935 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059936.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27513086 27585438 - MGP_C3HHeJ_P0059936 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059937.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27513087 27710312 - MGP_C3HHeJ_P0059937 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059938.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27514347 27809664 - MGP_C3HHeJ_P0059938 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059939.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27514496 27583005 - MGP_C3HHeJ_P0059939 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059940.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27514496 27568727 - MGP_C3HHeJ_P0059940 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059941.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27514562 27568766 - MGP_C3HHeJ_P0059941 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059942.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27524866 28089343 - MGP_C3HHeJ_P0059942 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059943.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27527234 28089635 - MGP_C3HHeJ_P0059943 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059944.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27539164 28130405 - MGP_C3HHeJ_P0059944 Mecom protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059945.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27546155 27584994 - Mecom protein_coding processed_transcript MGP_C3HHeJ_T0059946.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27546155 27585137 - Mecom protein_coding retained_intron MGP_C3HHeJ_T0059947.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27568792 27583371 - MGP_C3HHeJ_P0059947 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059948.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27586889 28089546 - Mecom protein_coding processed_transcript MGP_C3HHeJ_T0059949.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27806938 27809462 - Mecom protein_coding retained_intron MGP_C3HHeJ_T0059950.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27808064 28089316 - Mecom protein_coding processed_transcript MGP_C3HHeJ_T0059951.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27809473 27809821 - MGP_C3HHeJ_P0059951 Mecom protein_coding protein_coding MGP_C3HHeJ_T0010460.1 MGP_C3HHeJ_G0008593.1 mouse_genomes_project 3 118662251 118662316 + Gm22408 miRNA miRNA MGP_C3HHeJ_T0001184.1 MGP_C3HHeJ_G0001116.1 mouse_genomes_project 3 53927725 53930078 + TEC TEC MGP_C3HHeJ_T0100552.1 MGP_C3HHeJ_G0038746.1 mouse_genomes_project 3 85558155 85558223 - Snord73a snoRNA snoRNA MGP_C3HHeJ_T0062214.1 MGP_C3HHeJ_G0027326.1 mouse_genomes_project 3 96892904 96896134 + MGP_C3HHeJ_P0062214 Ankrd34a protein_coding protein_coding MGP_C3HHeJ_T0001316.1 MGP_C3HHeJ_G0001247.1 mouse_genomes_project 3 132727816 132729195 + TEC TEC MGP_C3HHeJ_T0001200.1 MGP_C3HHeJ_G0001132.1 mouse_genomes_project 3 64496212 64498705 + TEC TEC MGP_C3HHeJ_T0013747.1 MGP_C3HHeJ_G0011851.1 mouse_genomes_project 3 3809875 3810134 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100572.1 MGP_C3HHeJ_G0038766.1 mouse_genomes_project 3 116060981 116061113 - Gm23750 snoRNA snoRNA MGP_C3HHeJ_T0059695.1 MGP_C3HHeJ_G0026775.1 mouse_genomes_project 3 7525480 7529082 - MGP_C3HHeJ_P0059695 protein_coding protein_coding MGP_C3HHeJ_T0059696.1 MGP_C3HHeJ_G0026775.1 mouse_genomes_project 3 7525482 7529143 - MGP_C3HHeJ_P0059696 protein_coding protein_coding MGP_C3HHeJ_T0059697.1 MGP_C3HHeJ_G0026775.1 mouse_genomes_project 3 7525485 7529082 - MGP_C3HHeJ_P0059697 protein_coding protein_coding MGP_C3HHeJ_T0001132.1 MGP_C3HHeJ_G0001066.1 mouse_genomes_project 3 39673665 39676275 + TEC TEC MGP_C3HHeJ_T0061749.1 MGP_C3HHeJ_G0027188.1 mouse_genomes_project 3 90214972 90216233 + MGP_C3HHeJ_P0061749 S100a2 protein_coding protein_coding MGP_C3HHeJ_T0004130.1 MGP_C3HHeJ_G0003637.1 mouse_genomes_project 3 16537238 16550373 + Gm16093 antisense antisense MGP_C3HHeJ_T0099261.1 MGP_C3HHeJ_G0037455.1 mouse_genomes_project 3 64590223 64590330 - Gm25755 snRNA snRNA MGP_C3HHeJ_T0001194.1 MGP_C3HHeJ_G0001126.1 mouse_genomes_project 3 57721393 57722928 + TEC TEC MGP_C3HHeJ_T0013818.1 MGP_C3HHeJ_G0011922.1 mouse_genomes_project 3 25765359 25765603 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001094.1 MGP_C3HHeJ_G0001028.1 mouse_genomes_project 3 27729991 27731626 - TEC TEC MGP_C3HHeJ_T0062745.1 MGP_C3HHeJ_G0027452.1 mouse_genomes_project 3 108514864 108516251 - MGP_C3HHeJ_P0062745 Ubl4b protein_coding protein_coding MGP_C3HHeJ_T0004271.1 MGP_C3HHeJ_G0003728.1 mouse_genomes_project 3 109070696 109073124 + Gm12500 antisense antisense MGP_C3HHeJ_T0004272.1 MGP_C3HHeJ_G0003728.1 mouse_genomes_project 3 109071088 109073122 + Gm12500 antisense antisense MGP_C3HHeJ_T0061604.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89582209 89635348 - MGP_C3HHeJ_P0061604 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061605.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89582209 89635358 - MGP_C3HHeJ_P0061605 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061606.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89582357 89635368 - MGP_C3HHeJ_P0061606 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061607.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89582362 89635355 - MGP_C3HHeJ_P0061607 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061608.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89582882 89585359 - MGP_C3HHeJ_P0061608 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061609.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89584468 89585856 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061610.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89588063 89635345 - MGP_C3HHeJ_P0061610 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061611.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89588288 89604195 - MGP_C3HHeJ_P0061611 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061612.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89588289 89635408 - MGP_C3HHeJ_P0061612 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061613.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89588289 89635365 - MGP_C3HHeJ_P0061613 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061614.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89597105 89599199 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061615.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89597278 89603492 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061616.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89597923 89635224 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061617.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89599045 89600533 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061618.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89599457 89601399 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061619.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89603148 89610331 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061620.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89604934 89606323 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061621.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89619353 89621749 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061622.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89621872 89634975 - MGP_C3HHeJ_P0061622 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061623.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89624688 89635395 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061624.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89626628 89635521 - MGP_C3HHeJ_P0061624 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061625.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89626698 89635331 - MGP_C3HHeJ_P0061625 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061626.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89627762 89631192 - MGP_C3HHeJ_P0061626 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0060283.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38688529 38709899 + MGP_C3HHeJ_P0060283 Abhd18 protein_coding protein_coding MGP_C3HHeJ_T0060284.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38688543 38826734 + MGP_C3HHeJ_P0060284 Abhd18 protein_coding protein_coding MGP_C3HHeJ_T0060285.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38688572 38718942 + MGP_C3HHeJ_P0060285 Abhd18 protein_coding protein_coding MGP_C3HHeJ_T0060286.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38737481 38828563 + MGP_C3HHeJ_P0060286 Abhd18 protein_coding protein_coding MGP_C3HHeJ_T0060287.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38737613 38828561 + MGP_C3HHeJ_P0060287 Abhd18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060288.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38737658 38827564 + MGP_C3HHeJ_P0060288 Abhd18 protein_coding protein_coding MGP_C3HHeJ_T0060289.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38737660 38827581 + MGP_C3HHeJ_P0060289 Abhd18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060291.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38786412 38825820 + MGP_C3HHeJ_P0060291 Abhd18 protein_coding unknown_likely_coding MGP_C3HHeJ_T0060292.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38797284 38807164 + Abhd18 protein_coding retained_intron MGP_C3HHeJ_T0060293.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38820967 38827122 + Abhd18 protein_coding processed_transcript MGP_C3HHeJ_T0061192.1 MGP_C3HHeJ_G0027097.1 mouse_genomes_project 3 87577143 87579119 - MGP_C3HHeJ_P0061192 Apoa1bp protein_coding protein_coding MGP_C3HHeJ_T0013990.1 MGP_C3HHeJ_G0012094.1 mouse_genomes_project 3 82985102 82985625 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004177.1 MGP_C3HHeJ_G0003671.1 mouse_genomes_project 3 59547318 59549466 - Gm37035 antisense antisense MGP_C3HHeJ_T0014063.1 MGP_C3HHeJ_G0012167.1 mouse_genomes_project 3 103605587 103605876 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062635.1 MGP_C3HHeJ_G0027421.1 mouse_genomes_project 3 106566524 106583757 + MGP_C3HHeJ_P0062635 Fam212b protein_coding protein_coding MGP_C3HHeJ_T0062636.1 MGP_C3HHeJ_G0027421.1 mouse_genomes_project 3 106567395 106581063 + MGP_C3HHeJ_P0062636 Fam212b protein_coding protein_coding MGP_C3HHeJ_T0062565.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104776551 104817332 + MGP_C3HHeJ_P0062565 Phtf1 protein_coding protein_coding MGP_C3HHeJ_T0062566.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104776699 104817332 + MGP_C3HHeJ_P0062566 Phtf1 protein_coding protein_coding MGP_C3HHeJ_T0062567.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104776807 104835318 + MGP_C3HHeJ_P0062567 Phtf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062568.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104776809 104817334 + MGP_C3HHeJ_P0062568 Phtf1 protein_coding protein_coding MGP_C3HHeJ_T0062569.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104776813 104817332 + Phtf1 protein_coding retained_intron MGP_C3HHeJ_T0062570.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104776815 104800148 + MGP_C3HHeJ_P0062570 Phtf1 protein_coding protein_coding MGP_C3HHeJ_T0062571.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104776887 104817334 + MGP_C3HHeJ_P0062571 Phtf1 protein_coding protein_coding MGP_C3HHeJ_T0062572.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104777029 104796584 + MGP_C3HHeJ_P0062572 Phtf1 protein_coding protein_coding MGP_C3HHeJ_T0062573.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104777366 104807365 + MGP_C3HHeJ_P0062573 Phtf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062574.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104806263 104807409 + Phtf1 protein_coding retained_intron MGP_C3HHeJ_T0014025.1 MGP_C3HHeJ_G0012129.1 mouse_genomes_project 3 93396683 93397171 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014121.1 MGP_C3HHeJ_G0012225.1 mouse_genomes_project 3 122890128 122890549 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004288.1 MGP_C3HHeJ_G0003742.1 mouse_genomes_project 3 124449829 124513155 - 4933405D12Rik antisense antisense MGP_C3HHeJ_T0004289.1 MGP_C3HHeJ_G0003742.1 mouse_genomes_project 3 124467664 124513155 - 4933405D12Rik antisense antisense MGP_C3HHeJ_T0013761.1 MGP_C3HHeJ_G0011865.1 mouse_genomes_project 3 7219063 7222012 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059639.1 MGP_C3HHeJ_G0026757.1 mouse_genomes_project 3 595316 760065 + MGP_C3HHeJ_P0059639 Hnf4g protein_coding protein_coding MGP_C3HHeJ_T0059640.1 MGP_C3HHeJ_G0026757.1 mouse_genomes_project 3 735894 760273 + MGP_C3HHeJ_P0059640 Hnf4g protein_coding protein_coding MGP_C3HHeJ_T0004127.1 MGP_C3HHeJ_G0003635.1 mouse_genomes_project 3 2320535 2365335 - 2700069I18Rik antisense antisense MGP_C3HHeJ_T0004128.1 MGP_C3HHeJ_G0003635.1 mouse_genomes_project 3 2321929 2365353 - 2700069I18Rik antisense antisense MGP_C3HHeJ_T0062078.1 MGP_C3HHeJ_G0027294.1 mouse_genomes_project 3 95880493 95884882 + MGP_C3HHeJ_P0062078 Mcl1 protein_coding protein_coding MGP_C3HHeJ_T0062079.1 MGP_C3HHeJ_G0027294.1 mouse_genomes_project 3 95880562 95882529 + MGP_C3HHeJ_P0062079 Mcl1 protein_coding protein_coding MGP_C3HHeJ_T0098407.1 MGP_C3HHeJ_G0036613.1 mouse_genomes_project 3 84951547 84971083 - Gm15535 sense_intronic sense_intronic MGP_C3HHeJ_T0098408.1 MGP_C3HHeJ_G0036613.1 mouse_genomes_project 3 84955286 84970989 - Gm15535 sense_intronic sense_intronic MGP_C3HHeJ_T0062831.1 MGP_C3HHeJ_G0027473.1 mouse_genomes_project 3 109201761 109216933 - MGP_C3HHeJ_P0062831 Sypl2 protein_coding protein_coding MGP_C3HHeJ_T0062832.1 MGP_C3HHeJ_G0027473.1 mouse_genomes_project 3 109207590 109216928 - Sypl2 protein_coding retained_intron MGP_C3HHeJ_T0004131.1 MGP_C3HHeJ_G0003638.1 mouse_genomes_project 3 23794568 23795798 + A830092H15Rik antisense antisense MGP_C3HHeJ_T0004132.1 MGP_C3HHeJ_G0003638.1 mouse_genomes_project 3 23795370 23796801 + A830092H15Rik antisense antisense MGP_C3HHeJ_T0007399.1 MGP_C3HHeJ_G0006057.1 mouse_genomes_project 3 20791943 20847057 + 4930412E21Rik lincRNA lincRNA MGP_C3HHeJ_T0061116.1 MGP_C3HHeJ_G0027082.1 mouse_genomes_project 3 87226686 87238350 - MGP_C3HHeJ_P0061116 Lrrc71 protein_coding protein_coding MGP_C3HHeJ_T0061117.1 MGP_C3HHeJ_G0027082.1 mouse_genomes_project 3 87227658 87238352 - Lrrc71 protein_coding retained_intron MGP_C3HHeJ_T0061118.1 MGP_C3HHeJ_G0027082.1 mouse_genomes_project 3 87227709 87228336 - Lrrc71 protein_coding processed_transcript MGP_C3HHeJ_T0061119.1 MGP_C3HHeJ_G0027082.1 mouse_genomes_project 3 87228749 87230815 - MGP_C3HHeJ_P0061119 Lrrc71 protein_coding protein_coding MGP_C3HHeJ_T0061120.1 MGP_C3HHeJ_G0027082.1 mouse_genomes_project 3 87228844 87238191 - MGP_C3HHeJ_P0061120 Lrrc71 protein_coding unknown_likely_coding MGP_C3HHeJ_T0061121.1 MGP_C3HHeJ_G0027082.1 mouse_genomes_project 3 87235009 87238321 - Lrrc71 protein_coding retained_intron MGP_C3HHeJ_T0017741.1 MGP_C3HHeJ_G0015270.1 mouse_genomes_project 3 87731936 87734795 + AW047730 processed_transcript processed_transcript MGP_C3HHeJ_T0017742.1 MGP_C3HHeJ_G0015270.1 mouse_genomes_project 3 87731948 87734795 + AW047730 processed_transcript processed_transcript MGP_C3HHeJ_T0099258.1 MGP_C3HHeJ_G0037452.1 mouse_genomes_project 3 62072240 62072346 + Gm24946 snRNA snRNA MGP_C3HHeJ_T0007671.1 MGP_C3HHeJ_G0006271.1 mouse_genomes_project 3 147954465 147956646 + Gm17501 lincRNA lincRNA MGP_C3HHeJ_T0007672.1 MGP_C3HHeJ_G0006271.1 mouse_genomes_project 3 147956266 147998115 + Gm17501 lincRNA lincRNA MGP_C3HHeJ_T0004311.1 MGP_C3HHeJ_G0003759.1 mouse_genomes_project 3 139842733 139844547 - Gm43403 antisense antisense MGP_C3HHeJ_T0004312.1 MGP_C3HHeJ_G0003759.1 mouse_genomes_project 3 139843860 139844357 - Gm43403 antisense antisense MGP_C3HHeJ_T0013766.1 MGP_C3HHeJ_G0011870.1 mouse_genomes_project 3 8111793 8112304 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064161.1 MGP_C3HHeJ_G0027716.1 mouse_genomes_project 3 160833672 160866115 + MGP_C3HHeJ_P0064161 Lrrc40 protein_coding protein_coding MGP_C3HHeJ_T0064162.1 MGP_C3HHeJ_G0027716.1 mouse_genomes_project 3 160833710 160864717 + MGP_C3HHeJ_P0064162 Lrrc40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064163.1 MGP_C3HHeJ_G0027716.1 mouse_genomes_project 3 160833712 160864717 + MGP_C3HHeJ_P0064163 Lrrc40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064164.1 MGP_C3HHeJ_G0027716.1 mouse_genomes_project 3 160833732 160849429 + MGP_C3HHeJ_P0064164 Lrrc40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064165.1 MGP_C3HHeJ_G0027716.1 mouse_genomes_project 3 160833760 160849418 + MGP_C3HHeJ_P0064165 Lrrc40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064166.1 MGP_C3HHeJ_G0027716.1 mouse_genomes_project 3 160833870 160849364 + MGP_C3HHeJ_P0064166 Lrrc40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064167.1 MGP_C3HHeJ_G0027716.1 mouse_genomes_project 3 160859869 160864174 + Lrrc40 protein_coding retained_intron MGP_C3HHeJ_T0064168.1 MGP_C3HHeJ_G0027716.1 mouse_genomes_project 3 160860270 160861648 + Lrrc40 protein_coding retained_intron MGP_C3HHeJ_T0001320.1 MGP_C3HHeJ_G0001251.1 mouse_genomes_project 3 134573234 134575201 + TEC TEC MGP_C3HHeJ_T0001217.1 MGP_C3HHeJ_G0001149.1 mouse_genomes_project 3 78822812 78824101 - TEC TEC MGP_C3HHeJ_T0004211.1 MGP_C3HHeJ_G0003695.1 mouse_genomes_project 3 89892538 89894741 - 4930537H20Rik antisense antisense MGP_C3HHeJ_T0062197.1 MGP_C3HHeJ_G0027318.1 mouse_genomes_project 3 96522625 96523128 + MGP_C3HHeJ_P0062197 Hist2h3b protein_coding protein_coding MGP_C3HHeJ_T0013748.1 MGP_C3HHeJ_G0011852.1 mouse_genomes_project 3 3940223 3940569 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098411.1 MGP_C3HHeJ_G0036616.1 mouse_genomes_project 3 94623058 94625217 - Gm43773 sense_intronic sense_intronic MGP_C3HHeJ_T0101972.1 MGP_C3HHeJ_G0039937.1 mouse_genomes_project 3 107299003 107300105 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001302.1 MGP_C3HHeJ_G0001234.1 mouse_genomes_project 3 129398770 129400756 - TEC TEC MGP_C3HHeJ_T0061014.1 MGP_C3HHeJ_G0027058.1 mouse_genomes_project 3 83516511 83517540 + MGP_C3HHeJ_P0061014 Gm6525 protein_coding protein_coding MGP_C3HHeJ_T0013874.1 MGP_C3HHeJ_G0011978.1 mouse_genomes_project 3 45548467 45549177 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062233.1 MGP_C3HHeJ_G0027332.1 mouse_genomes_project 3 96972520 96993990 + MGP_C3HHeJ_P0062233 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062234.1 MGP_C3HHeJ_G0027332.1 mouse_genomes_project 3 96972604 96994020 + MGP_C3HHeJ_P0062234 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062235.1 MGP_C3HHeJ_G0027332.1 mouse_genomes_project 3 96982975 96986108 + protein_coding processed_transcript MGP_C3HHeJ_T0060915.1 MGP_C3HHeJ_G0027033.1 mouse_genomes_project 3 78852323 78954569 - MGP_C3HHeJ_P0060915 Rxfp1 protein_coding protein_coding MGP_C3HHeJ_T0060916.1 MGP_C3HHeJ_G0027033.1 mouse_genomes_project 3 78854816 78954655 - MGP_C3HHeJ_P0060916 Rxfp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060917.1 MGP_C3HHeJ_G0027033.1 mouse_genomes_project 3 78862351 78864234 - Rxfp1 protein_coding retained_intron MGP_C3HHeJ_T0060918.1 MGP_C3HHeJ_G0027033.1 mouse_genomes_project 3 78866015 78878499 - Rxfp1 protein_coding processed_transcript MGP_C3HHeJ_T0061394.1 MGP_C3HHeJ_G0027131.1 mouse_genomes_project 3 88667605 88678520 + MGP_C3HHeJ_P0061394 Pklr protein_coding protein_coding MGP_C3HHeJ_T0061395.1 MGP_C3HHeJ_G0027131.1 mouse_genomes_project 3 88667637 88668919 + Pklr protein_coding processed_transcript MGP_C3HHeJ_T0061396.1 MGP_C3HHeJ_G0027131.1 mouse_genomes_project 3 88668035 88678705 + MGP_C3HHeJ_P0061396 Pklr protein_coding protein_coding MGP_C3HHeJ_T0061397.1 MGP_C3HHeJ_G0027131.1 mouse_genomes_project 3 88668042 88673465 + MGP_C3HHeJ_P0061397 Pklr protein_coding protein_coding MGP_C3HHeJ_T0061398.1 MGP_C3HHeJ_G0027131.1 mouse_genomes_project 3 88668086 88672833 + Pklr protein_coding processed_transcript MGP_C3HHeJ_T0001326.1 MGP_C3HHeJ_G0001257.1 mouse_genomes_project 3 137324400 137332128 - TEC TEC MGP_C3HHeJ_T0060995.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83229257 83376781 - MGP_C3HHeJ_P0060995 D930015E06Rik protein_coding protein_coding MGP_C3HHeJ_T0060996.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83229811 83376743 - MGP_C3HHeJ_P0060996 D930015E06Rik protein_coding protein_coding MGP_C3HHeJ_T0060997.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83229811 83376781 - MGP_C3HHeJ_P0060997 D930015E06Rik protein_coding protein_coding MGP_C3HHeJ_T0060998.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83229812 83241242 - D930015E06Rik protein_coding processed_transcript MGP_C3HHeJ_T0060999.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83232362 83239612 - D930015E06Rik protein_coding retained_intron MGP_C3HHeJ_T0061000.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83232376 83241568 - D930015E06Rik protein_coding retained_intron MGP_C3HHeJ_T0061001.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83253382 83300716 - D930015E06Rik protein_coding processed_transcript MGP_C3HHeJ_T0061002.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83272654 83276467 - D930015E06Rik protein_coding processed_transcript MGP_C3HHeJ_T0061003.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83366937 83376734 - D930015E06Rik protein_coding retained_intron MGP_C3HHeJ_T0061004.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83373783 83376767 - D930015E06Rik protein_coding retained_intron MGP_C3HHeJ_T0061005.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83373981 83376740 - D930015E06Rik protein_coding retained_intron MGP_C3HHeJ_T0014006.1 MGP_C3HHeJ_G0012110.1 mouse_genomes_project 3 89385158 89385684 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060795.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67744853 67848577 - Ift80 protein_coding retained_intron MGP_C3HHeJ_T0060796.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67744853 67848561 - MGP_C3HHeJ_P0060796 Ift80 protein_coding protein_coding MGP_C3HHeJ_T0060797.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67744879 67848588 - MGP_C3HHeJ_P0060797 Ift80 protein_coding protein_coding MGP_C3HHeJ_T0060798.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67744879 67837282 - MGP_C3HHeJ_P0060798 Ift80 protein_coding protein_coding MGP_C3HHeJ_T0060799.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67745999 67766830 - Ift80 protein_coding retained_intron MGP_C3HHeJ_T0060800.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67761593 67761943 - Ift80 protein_coding retained_intron MGP_C3HHeJ_T0060801.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67764272 67848516 - Ift80 protein_coding retained_intron MGP_C3HHeJ_T0060802.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67783046 67816548 - Ift80 protein_coding processed_transcript MGP_C3HHeJ_T0060803.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67806443 67848495 - MGP_C3HHeJ_P0060803 Ift80 protein_coding protein_coding MGP_C3HHeJ_T0060804.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67810728 67848502 - MGP_C3HHeJ_P0060804 Ift80 protein_coding protein_coding MGP_C3HHeJ_T0060805.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67816106 67848406 - Ift80 protein_coding processed_transcript MGP_C3HHeJ_T0060806.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67846312 67848543 - Ift80 protein_coding retained_intron MGP_C3HHeJ_T0013767.1 MGP_C3HHeJ_G0011871.1 mouse_genomes_project 3 8341794 8342548 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062932.1 MGP_C3HHeJ_G0027494.1 mouse_genomes_project 3 110121003 110162637 + MGP_C3HHeJ_P0062932 Slc25a54 protein_coding protein_coding MGP_C3HHeJ_T0062933.1 MGP_C3HHeJ_G0027494.1 mouse_genomes_project 3 110121033 110162532 + MGP_C3HHeJ_P0062933 Slc25a54 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013841.1 MGP_C3HHeJ_G0011945.1 mouse_genomes_project 3 34951247 34952207 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013949.1 MGP_C3HHeJ_G0012053.1 mouse_genomes_project 3 68436761 68437775 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060892.1 MGP_C3HHeJ_G0027028.1 mouse_genomes_project 3 78536866 78633390 + MGP_C3HHeJ_P0060892 protein_coding protein_coding MGP_C3HHeJ_T0060893.1 MGP_C3HHeJ_G0027028.1 mouse_genomes_project 3 78546864 78668350 + MGP_C3HHeJ_P0060893 protein_coding protein_coding MGP_C3HHeJ_T0060894.1 MGP_C3HHeJ_G0027028.1 mouse_genomes_project 3 78546867 78634648 + MGP_C3HHeJ_P0060894 protein_coding protein_coding MGP_C3HHeJ_T0013979.1 MGP_C3HHeJ_G0012083.1 mouse_genomes_project 3 77327361 77328301 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062649.1 MGP_C3HHeJ_G0027425.1 mouse_genomes_project 3 106795210 106805092 - MGP_C3HHeJ_P0062649 I830077J02Rik protein_coding protein_coding MGP_C3HHeJ_T0062650.1 MGP_C3HHeJ_G0027425.1 mouse_genomes_project 3 106797259 106798848 - MGP_C3HHeJ_P0062650 I830077J02Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062651.1 MGP_C3HHeJ_G0027425.1 mouse_genomes_project 3 106798534 106805044 - I830077J02Rik protein_coding retained_intron MGP_C3HHeJ_T0001226.1 MGP_C3HHeJ_G0001158.1 mouse_genomes_project 3 89914112 89919610 + TEC TEC MGP_C3HHeJ_T0011443.1 MGP_C3HHeJ_G0009576.1 mouse_genomes_project 3 57432366 57432442 + Gm27793 misc_RNA misc_RNA MGP_C3HHeJ_T0062637.1 MGP_C3HHeJ_G0027422.1 mouse_genomes_project 3 106588799 106614394 - MGP_C3HHeJ_P0062637 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062638.1 MGP_C3HHeJ_G0027422.1 mouse_genomes_project 3 106600517 106668023 - MGP_C3HHeJ_P0062638 protein_coding protein_coding MGP_C3HHeJ_T0099300.1 MGP_C3HHeJ_G0037494.1 mouse_genomes_project 3 111621054 111621159 - Gm26076 snRNA snRNA MGP_C3HHeJ_T0007661.1 MGP_C3HHeJ_G0006263.1 mouse_genomes_project 3 145822666 145863963 - Gm6260 lincRNA lincRNA MGP_C3HHeJ_T0007662.1 MGP_C3HHeJ_G0006263.1 mouse_genomes_project 3 145846535 145864030 - Gm6260 lincRNA lincRNA MGP_C3HHeJ_T0061251.1 MGP_C3HHeJ_G0027109.1 mouse_genomes_project 3 87910586 87912281 - MGP_C3HHeJ_P0061251 Bglap protein_coding protein_coding MGP_C3HHeJ_T0013798.1 MGP_C3HHeJ_G0011902.1 mouse_genomes_project 3 17020817 17021868 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098421.1 MGP_C3HHeJ_G0036626.1 mouse_genomes_project 3 101299682 101301527 - Gm43463 sense_intronic sense_intronic MGP_C3HHeJ_T0062575.1 MGP_C3HHeJ_G0027407.1 mouse_genomes_project 3 104823983 105034482 - MGP_C3HHeJ_P0062575 Magi3 protein_coding protein_coding MGP_C3HHeJ_T0062576.1 MGP_C3HHeJ_G0027407.1 mouse_genomes_project 3 104824349 105034211 - MGP_C3HHeJ_P0062576 Magi3 protein_coding protein_coding MGP_C3HHeJ_T0062577.1 MGP_C3HHeJ_G0027407.1 mouse_genomes_project 3 104827193 105034346 - MGP_C3HHeJ_P0062577 Magi3 protein_coding protein_coding MGP_C3HHeJ_T0062578.1 MGP_C3HHeJ_G0027407.1 mouse_genomes_project 3 104874349 104876154 - Magi3 protein_coding retained_intron MGP_C3HHeJ_T0007550.1 MGP_C3HHeJ_G0006171.1 mouse_genomes_project 3 98296750 98333349 + Gm5544 lincRNA lincRNA MGP_C3HHeJ_T0007640.1 MGP_C3HHeJ_G0006245.1 mouse_genomes_project 3 139910775 139911219 - Gm43689 lincRNA lincRNA MGP_C3HHeJ_T0063957.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154806534 154832981 + MGP_C3HHeJ_P0063957 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063958.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154806585 154816611 + MGP_C3HHeJ_P0063958 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063959.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154806594 154828910 + MGP_C3HHeJ_P0063959 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063960.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154806604 154820978 + MGP_C3HHeJ_P0063960 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063961.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154806610 154828909 + MGP_C3HHeJ_P0063961 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063962.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154806626 154815827 + MGP_C3HHeJ_P0063962 Fubp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063963.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154806631 154828909 + MGP_C3HHeJ_P0063963 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063964.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154806631 154831923 + MGP_C3HHeJ_P0063964 Fubp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063965.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154806633 154832981 + MGP_C3HHeJ_P0063965 Fubp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063966.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154813542 154814616 + Fubp1 protein_coding retained_intron MGP_C3HHeJ_T0063967.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154817474 154820246 + MGP_C3HHeJ_P0063967 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063968.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154817996 154819092 + Fubp1 protein_coding retained_intron MGP_C3HHeJ_T0063969.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154819409 154828910 + MGP_C3HHeJ_P0063969 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063970.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154819422 154828927 + MGP_C3HHeJ_P0063970 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063971.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154819432 154831989 + MGP_C3HHeJ_P0063971 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063972.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154820839 154831557 + Fubp1 protein_coding retained_intron MGP_C3HHeJ_T0063973.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154821982 154824385 + Fubp1 protein_coding retained_intron MGP_C3HHeJ_T0063974.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154823416 154827448 + Fubp1 protein_coding retained_intron MGP_C3HHeJ_T0063975.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154823978 154828646 + Fubp1 protein_coding retained_intron MGP_C3HHeJ_T0059753.1 MGP_C3HHeJ_G0026794.1 mouse_genomes_project 3 12813064 12858918 - MGP_C3HHeJ_P0059753 protein_coding protein_coding MGP_C3HHeJ_T0059754.1 MGP_C3HHeJ_G0026794.1 mouse_genomes_project 3 12856313 13061141 - MGP_C3HHeJ_P0059754 protein_coding protein_coding MGP_C3HHeJ_T0001346.1 MGP_C3HHeJ_G0001277.1 mouse_genomes_project 3 154971991 154973435 - TEC TEC MGP_C3HHeJ_T0010472.1 MGP_C3HHeJ_G0008605.1 mouse_genomes_project 3 136078697 136078776 - Mir1895 miRNA miRNA MGP_C3HHeJ_T0001154.1 MGP_C3HHeJ_G0001088.1 mouse_genomes_project 3 49687647 49690143 - TEC TEC MGP_C3HHeJ_T0007665.1 MGP_C3HHeJ_G0006266.1 mouse_genomes_project 3 146033957 146118119 - Gm42707 lincRNA lincRNA MGP_C3HHeJ_T0007667.1 MGP_C3HHeJ_G0006266.1 mouse_genomes_project 3 146073115 146117743 - Gm42707 lincRNA lincRNA MGP_C3HHeJ_T0014153.1 MGP_C3HHeJ_G0012257.1 mouse_genomes_project 3 134458683 134459071 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062177.1 MGP_C3HHeJ_G0027309.1 mouse_genomes_project 3 96413812 96423639 + Mtmr11 protein_coding retained_intron MGP_C3HHeJ_T0062178.1 MGP_C3HHeJ_G0027309.1 mouse_genomes_project 3 96413812 96423640 + MGP_C3HHeJ_P0062178 Mtmr11 protein_coding protein_coding MGP_C3HHeJ_T0062179.1 MGP_C3HHeJ_G0027309.1 mouse_genomes_project 3 96413893 96423640 + MGP_C3HHeJ_P0062179 Mtmr11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062180.1 MGP_C3HHeJ_G0027309.1 mouse_genomes_project 3 96413974 96415198 + Mtmr11 protein_coding retained_intron MGP_C3HHeJ_T0062181.1 MGP_C3HHeJ_G0027309.1 mouse_genomes_project 3 96414390 96423640 + Mtmr11 protein_coding processed_transcript MGP_C3HHeJ_T0062182.1 MGP_C3HHeJ_G0027309.1 mouse_genomes_project 3 96420797 96421916 + Mtmr11 protein_coding processed_transcript MGP_C3HHeJ_T0062183.1 MGP_C3HHeJ_G0027309.1 mouse_genomes_project 3 96422507 96423392 + Mtmr11 protein_coding processed_transcript MGP_C3HHeJ_T0014165.1 MGP_C3HHeJ_G0012269.1 mouse_genomes_project 3 137061246 137061922 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004162.1 MGP_C3HHeJ_G0003659.1 mouse_genomes_project 3 43386106 43408845 - 1700027H10Rik antisense antisense MGP_C3HHeJ_T0010456.1 MGP_C3HHeJ_G0008589.1 mouse_genomes_project 3 104461160 104461246 - Gm25325 miRNA miRNA MGP_C3HHeJ_T0099294.1 MGP_C3HHeJ_G0037488.1 mouse_genomes_project 3 104224702 104224809 - Gm25199 snRNA snRNA MGP_C3HHeJ_T0060762.1 MGP_C3HHeJ_G0026996.1 mouse_genomes_project 3 66202059 66228045 + MGP_C3HHeJ_P0060762 Mlf1 protein_coding protein_coding MGP_C3HHeJ_T0060763.1 MGP_C3HHeJ_G0026996.1 mouse_genomes_project 3 66202087 66208631 + Mlf1 protein_coding processed_transcript MGP_C3HHeJ_T0060764.1 MGP_C3HHeJ_G0026996.1 mouse_genomes_project 3 66202104 66223346 + MGP_C3HHeJ_P0060764 Mlf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060765.1 MGP_C3HHeJ_G0026996.1 mouse_genomes_project 3 66202110 66228050 + MGP_C3HHeJ_P0060765 Mlf1 protein_coding protein_coding MGP_C3HHeJ_T0061776.1 MGP_C3HHeJ_G0027204.1 mouse_genomes_project 3 92186911 92188645 + MGP_C3HHeJ_P0061776 Sprr2d protein_coding protein_coding MGP_C3HHeJ_T0004302.1 MGP_C3HHeJ_G0003753.1 mouse_genomes_project 3 132948135 132952156 - Gm43352 antisense antisense MGP_C3HHeJ_T0099276.1 MGP_C3HHeJ_G0037470.1 mouse_genomes_project 3 88624181 88624285 - Gm22935 snRNA snRNA MGP_C3HHeJ_T0062936.1 MGP_C3HHeJ_G0027496.1 mouse_genomes_project 3 110399261 110747301 + MGP_C3HHeJ_P0062936 Vav3 protein_coding protein_coding MGP_C3HHeJ_T0062937.1 MGP_C3HHeJ_G0027496.1 mouse_genomes_project 3 110399291 110626503 + Vav3 protein_coding retained_intron MGP_C3HHeJ_T0062938.1 MGP_C3HHeJ_G0027496.1 mouse_genomes_project 3 110399647 110747303 + MGP_C3HHeJ_P0062938 Vav3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062939.1 MGP_C3HHeJ_G0027496.1 mouse_genomes_project 3 110399714 110506644 + Vav3 protein_coding processed_transcript MGP_C3HHeJ_T0062940.1 MGP_C3HHeJ_G0027496.1 mouse_genomes_project 3 110556898 110565809 + Vav3 protein_coding processed_transcript MGP_C3HHeJ_T0062941.1 MGP_C3HHeJ_G0027496.1 mouse_genomes_project 3 110636851 110747297 + MGP_C3HHeJ_P0062941 Vav3 protein_coding protein_coding MGP_C3HHeJ_T0062942.1 MGP_C3HHeJ_G0027496.1 mouse_genomes_project 3 110706192 110744502 + Vav3 protein_coding processed_transcript MGP_C3HHeJ_T0098428.1 MGP_C3HHeJ_G0036633.1 mouse_genomes_project 3 102834629 102837511 + 4632404M16Rik sense_intronic sense_intronic MGP_C3HHeJ_T0062789.1 MGP_C3HHeJ_G0027463.1 mouse_genomes_project 3 108960073 108965999 - MGP_C3HHeJ_P0062789 protein_coding protein_coding MGP_C3HHeJ_T0062790.1 MGP_C3HHeJ_G0027463.1 mouse_genomes_project 3 108961445 108965906 - MGP_C3HHeJ_P0062790 protein_coding protein_coding MGP_C3HHeJ_T0062791.1 MGP_C3HHeJ_G0027463.1 mouse_genomes_project 3 108961503 108965939 - MGP_C3HHeJ_P0062791 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062792.1 MGP_C3HHeJ_G0027463.1 mouse_genomes_project 3 108964526 108965967 - protein_coding retained_intron MGP_C3HHeJ_T0062793.1 MGP_C3HHeJ_G0027463.1 mouse_genomes_project 3 108965027 108965967 - protein_coding retained_intron MGP_C3HHeJ_T0063000.1 MGP_C3HHeJ_G0027508.1 mouse_genomes_project 3 117372153 117392170 - MGP_C3HHeJ_P0063000 Vcam1 protein_coding protein_coding MGP_C3HHeJ_T0063001.1 MGP_C3HHeJ_G0027508.1 mouse_genomes_project 3 117378588 117382673 - Vcam1 protein_coding retained_intron MGP_C3HHeJ_T0063002.1 MGP_C3HHeJ_G0027508.1 mouse_genomes_project 3 117384225 117391939 - MGP_C3HHeJ_P0063002 Vcam1 protein_coding protein_coding MGP_C3HHeJ_T0063003.1 MGP_C3HHeJ_G0027508.1 mouse_genomes_project 3 117386564 117391411 - MGP_C3HHeJ_P0063003 Vcam1 protein_coding protein_coding MGP_C3HHeJ_T0014193.1 MGP_C3HHeJ_G0012297.1 mouse_genomes_project 3 144640432 144641068 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007396.1 MGP_C3HHeJ_G0006054.1 mouse_genomes_project 3 19425504 19427235 - Gm43672 lincRNA lincRNA MGP_C3HHeJ_T0061777.1 MGP_C3HHeJ_G0027205.1 mouse_genomes_project 3 92200255 92201562 + MGP_C3HHeJ_P0061777 Sprr2e protein_coding protein_coding MGP_C3HHeJ_T0098448.1 MGP_C3HHeJ_G0036653.1 mouse_genomes_project 3 105301180 105307223 - Gm43696 sense_intronic sense_intronic MGP_C3HHeJ_T0007634.1 MGP_C3HHeJ_G0006239.1 mouse_genomes_project 3 138370705 138385045 - 1700030L20Rik lincRNA lincRNA MGP_C3HHeJ_T0007629.1 MGP_C3HHeJ_G0006235.1 mouse_genomes_project 3 135996656 136027547 + Gm43192 lincRNA lincRNA MGP_C3HHeJ_T0004235.1 MGP_C3HHeJ_G0003711.1 mouse_genomes_project 3 97138195 97140466 - 4930442L01Rik antisense antisense MGP_C3HHeJ_T0062980.1 MGP_C3HHeJ_G0027503.1 mouse_genomes_project 3 116143919 116361511 + MGP_C3HHeJ_P0062980 Olfm3 protein_coding protein_coding MGP_C3HHeJ_T0062981.1 MGP_C3HHeJ_G0027503.1 mouse_genomes_project 3 116144476 116356774 + MGP_C3HHeJ_P0062981 Olfm3 protein_coding protein_coding MGP_C3HHeJ_T0062982.1 MGP_C3HHeJ_G0027503.1 mouse_genomes_project 3 116316077 116361056 + MGP_C3HHeJ_P0062982 Olfm3 protein_coding protein_coding MGP_C3HHeJ_T0063893.1 MGP_C3HHeJ_G0027680.1 mouse_genomes_project 3 149101236 149188911 - MGP_C3HHeJ_P0063893 Prkacb protein_coding protein_coding MGP_C3HHeJ_T0063894.1 MGP_C3HHeJ_G0027680.1 mouse_genomes_project 3 149101527 149144673 - MGP_C3HHeJ_P0063894 Prkacb protein_coding protein_coding MGP_C3HHeJ_T0063895.1 MGP_C3HHeJ_G0027680.1 mouse_genomes_project 3 149101527 149144153 - MGP_C3HHeJ_P0063895 Prkacb protein_coding protein_coding MGP_C3HHeJ_T0063896.1 MGP_C3HHeJ_G0027680.1 mouse_genomes_project 3 149101529 149155296 - MGP_C3HHeJ_P0063896 Prkacb protein_coding protein_coding MGP_C3HHeJ_T0063897.1 MGP_C3HHeJ_G0027680.1 mouse_genomes_project 3 149103990 149118447 - Prkacb protein_coding retained_intron MGP_C3HHeJ_T0063898.1 MGP_C3HHeJ_G0027680.1 mouse_genomes_project 3 149120792 149138462 - MGP_C3HHeJ_P0063898 Prkacb protein_coding protein_coding MGP_C3HHeJ_T0063899.1 MGP_C3HHeJ_G0027680.1 mouse_genomes_project 3 149120792 149164561 - MGP_C3HHeJ_P0063899 Prkacb protein_coding protein_coding MGP_C3HHeJ_T0063900.1 MGP_C3HHeJ_G0027680.1 mouse_genomes_project 3 149185468 149188941 - Prkacb protein_coding retained_intron MGP_C3HHeJ_T0013799.1 MGP_C3HHeJ_G0011903.1 mouse_genomes_project 3 17082114 17082497 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004280.1 MGP_C3HHeJ_G0003736.1 mouse_genomes_project 3 117922571 117924400 - Gm42893 antisense antisense MGP_C3HHeJ_T0013752.1 MGP_C3HHeJ_G0011856.1 mouse_genomes_project 3 5414955 5416807 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013962.1 MGP_C3HHeJ_G0012066.1 mouse_genomes_project 3 71016944 71017449 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007475.1 MGP_C3HHeJ_G0006115.1 mouse_genomes_project 3 57126019 57222323 + 4930593A02Rik lincRNA lincRNA MGP_C3HHeJ_T0007476.1 MGP_C3HHeJ_G0006115.1 mouse_genomes_project 3 57168737 57232132 + 4930593A02Rik lincRNA lincRNA MGP_C3HHeJ_T0063007.1 MGP_C3HHeJ_G0027510.1 mouse_genomes_project 3 117544689 117702416 - MGP_C3HHeJ_P0063007 Cdc14a protein_coding protein_coding MGP_C3HHeJ_T0063008.1 MGP_C3HHeJ_G0027510.1 mouse_genomes_project 3 117544689 117702370 - MGP_C3HHeJ_P0063008 Cdc14a protein_coding protein_coding MGP_C3HHeJ_T0063009.1 MGP_C3HHeJ_G0027510.1 mouse_genomes_project 3 117595865 117701033 - MGP_C3HHeJ_P0063009 Cdc14a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063010.1 MGP_C3HHeJ_G0027510.1 mouse_genomes_project 3 117600495 117702416 - Cdc14a protein_coding retained_intron MGP_C3HHeJ_T0063011.1 MGP_C3HHeJ_G0027510.1 mouse_genomes_project 3 117677220 117701408 - Cdc14a protein_coding retained_intron MGP_C3HHeJ_T0063012.1 MGP_C3HHeJ_G0027510.1 mouse_genomes_project 3 117680422 117682524 - Cdc14a protein_coding retained_intron MGP_C3HHeJ_T0063013.1 MGP_C3HHeJ_G0027510.1 mouse_genomes_project 3 117681143 117702279 - Cdc14a protein_coding processed_transcript MGP_C3HHeJ_T0101414.1 MGP_C3HHeJ_G0039448.1 mouse_genomes_project 3 94853332 94856927 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101415.1 MGP_C3HHeJ_G0039448.1 mouse_genomes_project 3 94853383 94871336 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0060681.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62302809 62382055 - MGP_C3HHeJ_P0060681 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060682.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62302813 62462314 - MGP_C3HHeJ_P0060682 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060683.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62302816 62308934 - Plch1 protein_coding retained_intron MGP_C3HHeJ_T0060684.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62302816 62348293 - Plch1 protein_coding retained_intron MGP_C3HHeJ_T0060685.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62302816 62462532 - MGP_C3HHeJ_P0060685 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060686.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62302816 62462266 - MGP_C3HHeJ_P0060686 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060687.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62302816 62462558 - MGP_C3HHeJ_P0060687 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060688.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62302817 62462266 - MGP_C3HHeJ_P0060688 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060689.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62303310 62512449 - MGP_C3HHeJ_P0060689 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060690.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62305512 62308623 - MGP_C3HHeJ_P0060690 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060691.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62308395 62462634 - MGP_C3HHeJ_P0060691 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060692.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62389783 62512419 - MGP_C3HHeJ_P0060692 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060693.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62481441 62512350 - MGP_C3HHeJ_P0060693 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0013858.1 MGP_C3HHeJ_G0011962.1 mouse_genomes_project 3 39375659 39376122 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004169.1 MGP_C3HHeJ_G0003665.1 mouse_genomes_project 3 51728195 51734727 + Gm16206 antisense antisense MGP_C3HHeJ_T0098459.1 MGP_C3HHeJ_G0036664.1 mouse_genomes_project 3 106649580 106651733 - Gm43330 sense_intronic sense_intronic MGP_C3HHeJ_T0059854.1 MGP_C3HHeJ_G0026819.1 mouse_genomes_project 3 22848260 23795880 - MGP_C3HHeJ_P0059854 Nlgn1 protein_coding protein_coding MGP_C3HHeJ_T0059855.1 MGP_C3HHeJ_G0026819.1 mouse_genomes_project 3 22854984 23581398 - MGP_C3HHeJ_P0059855 Nlgn1 protein_coding protein_coding MGP_C3HHeJ_T0059856.1 MGP_C3HHeJ_G0026819.1 mouse_genomes_project 3 22854984 23581398 - MGP_C3HHeJ_P0059856 Nlgn1 protein_coding protein_coding MGP_C3HHeJ_T0059857.1 MGP_C3HHeJ_G0026819.1 mouse_genomes_project 3 22856604 23602673 - MGP_C3HHeJ_P0059857 Nlgn1 protein_coding protein_coding MGP_C3HHeJ_T0059858.1 MGP_C3HHeJ_G0026819.1 mouse_genomes_project 3 23579333 23795290 - Nlgn1 protein_coding retained_intron MGP_C3HHeJ_T0007562.1 MGP_C3HHeJ_G0006181.1 mouse_genomes_project 3 103085753 103087535 + Gm43242 lincRNA lincRNA MGP_C3HHeJ_T0004332.1 MGP_C3HHeJ_G0003774.1 mouse_genomes_project 3 156490037 156505905 - Asb17os antisense antisense MGP_C3HHeJ_T0004333.1 MGP_C3HHeJ_G0003774.1 mouse_genomes_project 3 156503876 156505928 - Asb17os antisense antisense MGP_C3HHeJ_T0007511.1 MGP_C3HHeJ_G0006145.1 mouse_genomes_project 3 83697919 83721004 - 4930565D16Rik lincRNA lincRNA MGP_C3HHeJ_T0010447.1 MGP_C3HHeJ_G0008580.1 mouse_genomes_project 3 91846896 91847006 - Gm23697 miRNA miRNA MGP_C3HHeJ_T0063435.1 MGP_C3HHeJ_G0027584.1 mouse_genomes_project 3 132756261 132757768 - MGP_C3HHeJ_P0063435 protein_coding protein_coding MGP_C3HHeJ_T0061886.1 MGP_C3HHeJ_G0027261.1 mouse_genomes_project 3 94703118 94747228 - MGP_C3HHeJ_P0061886 Tuft1 protein_coding protein_coding MGP_C3HHeJ_T0061887.1 MGP_C3HHeJ_G0027261.1 mouse_genomes_project 3 94703355 94747156 - MGP_C3HHeJ_P0061887 Tuft1 protein_coding protein_coding MGP_C3HHeJ_T0061888.1 MGP_C3HHeJ_G0027261.1 mouse_genomes_project 3 94704527 94706614 - Tuft1 protein_coding retained_intron MGP_C3HHeJ_T0099307.1 MGP_C3HHeJ_G0037501.1 mouse_genomes_project 3 133858101 133858208 - Gm22421 snRNA snRNA MGP_C3HHeJ_T0004290.1 MGP_C3HHeJ_G0003743.1 mouse_genomes_project 3 125042762 125045882 - Gm43591 antisense antisense MGP_C3HHeJ_T0001169.1 MGP_C3HHeJ_G0001101.1 mouse_genomes_project 3 50213122 50213741 - TEC TEC MGP_C3HHeJ_T0061686.1 MGP_C3HHeJ_G0027176.1 mouse_genomes_project 3 89893415 89968364 + MGP_C3HHeJ_P0061686 Gatad2b protein_coding protein_coding MGP_C3HHeJ_T0061687.1 MGP_C3HHeJ_G0027176.1 mouse_genomes_project 3 89893421 89956319 + Gatad2b protein_coding retained_intron MGP_C3HHeJ_T0061688.1 MGP_C3HHeJ_G0027176.1 mouse_genomes_project 3 89894111 89961880 + Gatad2b protein_coding retained_intron MGP_C3HHeJ_T0061689.1 MGP_C3HHeJ_G0027176.1 mouse_genomes_project 3 89894840 89962140 + MGP_C3HHeJ_P0061689 Gatad2b protein_coding protein_coding MGP_C3HHeJ_T0061690.1 MGP_C3HHeJ_G0027176.1 mouse_genomes_project 3 89943596 89946039 + Gatad2b protein_coding retained_intron MGP_C3HHeJ_T0061691.1 MGP_C3HHeJ_G0027176.1 mouse_genomes_project 3 89944221 89961887 + MGP_C3HHeJ_P0061691 Gatad2b protein_coding protein_coding MGP_C3HHeJ_T0061692.1 MGP_C3HHeJ_G0027176.1 mouse_genomes_project 3 89944223 89961846 + MGP_C3HHeJ_P0061692 Gatad2b protein_coding protein_coding MGP_C3HHeJ_T0061693.1 MGP_C3HHeJ_G0027176.1 mouse_genomes_project 3 89955184 89959901 + MGP_C3HHeJ_P0061693 Gatad2b protein_coding protein_coding MGP_C3HHeJ_T0063515.1 MGP_C3HHeJ_G0027601.1 mouse_genomes_project 3 136714965 136825143 + MGP_C3HHeJ_P0063515 Tacr3 protein_coding protein_coding MGP_C3HHeJ_T0001365.1 MGP_C3HHeJ_G0001296.1 mouse_genomes_project 3 160975758 160977106 + TEC TEC MGP_C3HHeJ_T0007554.1 MGP_C3HHeJ_G0006175.1 mouse_genomes_project 3 101106805 101142477 + Gm12474 lincRNA lincRNA MGP_C3HHeJ_T0007701.1 MGP_C3HHeJ_G0006292.1 mouse_genomes_project 3 159299285 159314205 - 4930570G19Rik lincRNA lincRNA MGP_C3HHeJ_T0007702.1 MGP_C3HHeJ_G0006292.1 mouse_genomes_project 3 159299293 159314100 - 4930570G19Rik lincRNA lincRNA MGP_C3HHeJ_T0007703.1 MGP_C3HHeJ_G0006292.1 mouse_genomes_project 3 159300947 159314193 - 4930570G19Rik lincRNA lincRNA MGP_C3HHeJ_T0007704.1 MGP_C3HHeJ_G0006292.1 mouse_genomes_project 3 159312373 159314264 - 4930570G19Rik lincRNA lincRNA MGP_C3HHeJ_T0062362.1 MGP_C3HHeJ_G0027364.1 mouse_genomes_project 3 99799733 99872170 + MGP_C3HHeJ_P0062362 Tbx15 protein_coding protein_coding MGP_C3HHeJ_T0062363.1 MGP_C3HHeJ_G0027364.1 mouse_genomes_project 3 99812996 99913409 + MGP_C3HHeJ_P0062363 Tbx15 protein_coding protein_coding MGP_C3HHeJ_T0062364.1 MGP_C3HHeJ_G0027364.1 mouse_genomes_project 3 99855578 99875345 + MGP_C3HHeJ_P0062364 Tbx15 protein_coding protein_coding MGP_C3HHeJ_T0004286.1 MGP_C3HHeJ_G0003740.1 mouse_genomes_project 3 123990282 124023489 - Gm42836 antisense antisense MGP_C3HHeJ_T0063288.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128562845 128647235 - MGP_C3HHeJ_P0063288 protein_coding protein_coding MGP_C3HHeJ_T0063289.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128562847 128565230 - protein_coding retained_intron MGP_C3HHeJ_T0063290.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128562847 128585970 - MGP_C3HHeJ_P0063290 protein_coding protein_coding MGP_C3HHeJ_T0063291.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128565169 128571096 - MGP_C3HHeJ_P0063291 protein_coding protein_coding MGP_C3HHeJ_T0063292.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128565170 128571096 - MGP_C3HHeJ_P0063292 protein_coding protein_coding MGP_C3HHeJ_T0063293.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128566884 128569652 - protein_coding retained_intron MGP_C3HHeJ_T0063294.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128574466 128576388 - protein_coding retained_intron MGP_C3HHeJ_T0063295.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128580355 128598649 - MGP_C3HHeJ_P0063295 protein_coding protein_coding MGP_C3HHeJ_T0063296.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128582702 128598448 - MGP_C3HHeJ_P0063296 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063297.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128589695 129068665 - MGP_C3HHeJ_P0063297 protein_coding protein_coding MGP_C3HHeJ_T0063298.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128592754 128647211 - protein_coding retained_intron MGP_C3HHeJ_T0063299.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128601602 129164279 - MGP_C3HHeJ_P0063299 protein_coding protein_coding MGP_C3HHeJ_T0063300.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128602383 129068604 - MGP_C3HHeJ_P0063300 protein_coding protein_coding MGP_C3HHeJ_T0063301.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128664000 128672938 - protein_coding retained_intron MGP_C3HHeJ_T0063302.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128673463 129068637 - MGP_C3HHeJ_P0063302 protein_coding protein_coding MGP_C3HHeJ_T0063303.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128673533 129068637 - MGP_C3HHeJ_P0063303 protein_coding protein_coding MGP_C3HHeJ_T0063304.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128679682 128808016 - MGP_C3HHeJ_P0063304 protein_coding protein_coding MGP_C3HHeJ_T0063305.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128679682 129068573 - MGP_C3HHeJ_P0063305 protein_coding protein_coding MGP_C3HHeJ_T0063306.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128729141 128871360 - MGP_C3HHeJ_P0063306 protein_coding protein_coding MGP_C3HHeJ_T0063307.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128729746 128807909 - protein_coding retained_intron MGP_C3HHeJ_T0063308.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128731556 129068560 - MGP_C3HHeJ_P0063308 protein_coding protein_coding MGP_C3HHeJ_T0063309.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128805389 128807875 - protein_coding retained_intron MGP_C3HHeJ_T0063310.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128983890 129068601 - protein_coding retained_intron MGP_C3HHeJ_T0063311.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128985520 129163931 - protein_coding retained_intron MGP_C3HHeJ_T0063312.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 129161035 129164189 - protein_coding retained_intron MGP_C3HHeJ_T0063313.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 129163591 129163930 - MGP_C3HHeJ_P0063313 protein_coding protein_coding MGP_C3HHeJ_T0007649.1 MGP_C3HHeJ_G0006252.1 mouse_genomes_project 3 144999173 145010197 + 9530052C20Rik lincRNA lincRNA MGP_C3HHeJ_T0064117.1 MGP_C3HHeJ_G0027711.1 mouse_genomes_project 3 160318512 160332701 + MGP_C3HHeJ_P0064117 Zranb2 protein_coding protein_coding MGP_C3HHeJ_T0064118.1 MGP_C3HHeJ_G0027711.1 mouse_genomes_project 3 160318711 160332627 + MGP_C3HHeJ_P0064118 Zranb2 protein_coding protein_coding MGP_C3HHeJ_T0064119.1 MGP_C3HHeJ_G0027711.1 mouse_genomes_project 3 160318711 160332627 + MGP_C3HHeJ_P0064119 Zranb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064120.1 MGP_C3HHeJ_G0027711.1 mouse_genomes_project 3 160318728 160327497 + MGP_C3HHeJ_P0064120 Zranb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064121.1 MGP_C3HHeJ_G0027711.1 mouse_genomes_project 3 160318740 160332667 + MGP_C3HHeJ_P0064121 Zranb2 protein_coding protein_coding MGP_C3HHeJ_T0064122.1 MGP_C3HHeJ_G0027711.1 mouse_genomes_project 3 160318777 160331214 + Zranb2 protein_coding retained_intron MGP_C3HHeJ_T0064123.1 MGP_C3HHeJ_G0027711.1 mouse_genomes_project 3 160323345 160326061 + Zranb2 protein_coding retained_intron MGP_C3HHeJ_T0064124.1 MGP_C3HHeJ_G0027711.1 mouse_genomes_project 3 160324946 160331094 + MGP_C3HHeJ_P0064124 Zranb2 protein_coding protein_coding MGP_C3HHeJ_T0011457.1 MGP_C3HHeJ_G0009590.1 mouse_genomes_project 3 156258845 156259113 + Gm22136 misc_RNA misc_RNA MGP_C3HHeJ_T0101965.1 MGP_C3HHeJ_G0039930.1 mouse_genomes_project 3 94342375 94342570 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014007.1 MGP_C3HHeJ_G0012111.1 mouse_genomes_project 3 90276927 90277080 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061785.1 MGP_C3HHeJ_G0027212.1 mouse_genomes_project 3 92292468 92294425 - MGP_C3HHeJ_P0061785 Sprr1b protein_coding protein_coding MGP_C3HHeJ_T0001164.1 MGP_C3HHeJ_G0001097.1 mouse_genomes_project 3 50092688 50095528 - TEC TEC MGP_C3HHeJ_T0017766.1 MGP_C3HHeJ_G0015282.1 mouse_genomes_project 3 117144639 117151534 - A930005H10Rik processed_transcript antisense MGP_C3HHeJ_T0017767.1 MGP_C3HHeJ_G0015282.1 mouse_genomes_project 3 117144639 117151498 - A930005H10Rik processed_transcript antisense MGP_C3HHeJ_T0017768.1 MGP_C3HHeJ_G0015282.1 mouse_genomes_project 3 117144641 117151357 - A930005H10Rik processed_transcript antisense MGP_C3HHeJ_T0017769.1 MGP_C3HHeJ_G0015282.1 mouse_genomes_project 3 117144844 117151508 - A930005H10Rik processed_transcript antisense MGP_C3HHeJ_T0017770.1 MGP_C3HHeJ_G0015282.1 mouse_genomes_project 3 117149398 117151501 - A930005H10Rik processed_transcript retained_intron MGP_C3HHeJ_T0017771.1 MGP_C3HHeJ_G0015282.1 mouse_genomes_project 3 117149497 117151292 - A930005H10Rik processed_transcript retained_intron MGP_C3HHeJ_T0017772.1 MGP_C3HHeJ_G0015282.1 mouse_genomes_project 3 117151226 117151534 - A930005H10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0063581.1 MGP_C3HHeJ_G0027611.1 mouse_genomes_project 3 137984451 138258217 - MGP_C3HHeJ_P0063581 Bank1 protein_coding protein_coding MGP_C3HHeJ_T0063582.1 MGP_C3HHeJ_G0027611.1 mouse_genomes_project 3 137984451 138258197 - MGP_C3HHeJ_P0063582 Bank1 protein_coding protein_coding MGP_C3HHeJ_T0063583.1 MGP_C3HHeJ_G0027611.1 mouse_genomes_project 3 137984537 138258176 - MGP_C3HHeJ_P0063583 Bank1 protein_coding protein_coding MGP_C3HHeJ_T0063584.1 MGP_C3HHeJ_G0027611.1 mouse_genomes_project 3 137985010 137985805 - Bank1 protein_coding retained_intron MGP_C3HHeJ_T0063585.1 MGP_C3HHeJ_G0027611.1 mouse_genomes_project 3 137985025 137987192 - Bank1 protein_coding retained_intron MGP_C3HHeJ_T0063586.1 MGP_C3HHeJ_G0027611.1 mouse_genomes_project 3 138139249 138176997 - Bank1 protein_coding retained_intron MGP_C3HHeJ_T0098440.1 MGP_C3HHeJ_G0036645.1 mouse_genomes_project 3 104933715 104935575 - Gm42699 sense_intronic sense_intronic MGP_C3HHeJ_T0010474.1 MGP_C3HHeJ_G0008607.1 mouse_genomes_project 3 138754727 138754844 - Gm44327 miRNA miRNA MGP_C3HHeJ_T0004232.1 MGP_C3HHeJ_G0003709.1 mouse_genomes_project 3 96521046 96524276 - Gm20628 antisense antisense MGP_C3HHeJ_T0001225.1 MGP_C3HHeJ_G0001157.1 mouse_genomes_project 3 88745071 88747812 + TEC TEC MGP_C3HHeJ_T0014206.1 MGP_C3HHeJ_G0012310.1 mouse_genomes_project 3 151085287 151085803 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060151.1 MGP_C3HHeJ_G0026872.1 mouse_genomes_project 3 33993501 34037065 - MGP_C3HHeJ_P0060151 Qrfpr protein_coding protein_coding MGP_C3HHeJ_T0060152.1 MGP_C3HHeJ_G0026872.1 mouse_genomes_project 3 34001363 34037006 - Qrfpr protein_coding retained_intron MGP_C3HHeJ_T0014173.1 MGP_C3HHeJ_G0012277.1 mouse_genomes_project 3 138279156 138279315 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100521.1 MGP_C3HHeJ_G0038715.1 mouse_genomes_project 3 8310246 8310364 - Gm22795 snoRNA snoRNA MGP_C3HHeJ_T0061086.1 MGP_C3HHeJ_G0027074.1 mouse_genomes_project 3 86425502 86427838 - MGP_C3HHeJ_P0061086 protein_coding protein_coding MGP_C3HHeJ_T0061769.1 MGP_C3HHeJ_G0027197.1 mouse_genomes_project 3 90429233 90431925 - MGP_C3HHeJ_P0061769 Gm5849 protein_coding protein_coding MGP_C3HHeJ_T0060972.1 MGP_C3HHeJ_G0027045.1 mouse_genomes_project 3 81798584 81808298 - MGP_C3HHeJ_P0060972 Npy2r protein_coding protein_coding MGP_C3HHeJ_T0060973.1 MGP_C3HHeJ_G0027045.1 mouse_genomes_project 3 81798587 81808266 - MGP_C3HHeJ_P0060973 Npy2r protein_coding protein_coding MGP_C3HHeJ_T0060974.1 MGP_C3HHeJ_G0027045.1 mouse_genomes_project 3 81800150 81808174 - MGP_C3HHeJ_P0060974 Npy2r protein_coding protein_coding MGP_C3HHeJ_T0060975.1 MGP_C3HHeJ_G0027045.1 mouse_genomes_project 3 81800150 81808174 - MGP_C3HHeJ_P0060975 Npy2r protein_coding protein_coding MGP_C3HHeJ_T0099285.1 MGP_C3HHeJ_G0037479.1 mouse_genomes_project 3 96575891 96576090 + Gm24830 snRNA snRNA MGP_C3HHeJ_T0060426.1 MGP_C3HHeJ_G0026920.1 mouse_genomes_project 3 51724159 51740264 - MGP_C3HHeJ_P0060426 Nhlrc3 protein_coding protein_coding MGP_C3HHeJ_T0060427.1 MGP_C3HHeJ_G0026920.1 mouse_genomes_project 3 51724164 51740255 - MGP_C3HHeJ_P0060427 Nhlrc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060428.1 MGP_C3HHeJ_G0026920.1 mouse_genomes_project 3 51735301 51738915 - Nhlrc3 protein_coding retained_intron MGP_C3HHeJ_T0060429.1 MGP_C3HHeJ_G0026920.1 mouse_genomes_project 3 51735806 51740183 - Nhlrc3 protein_coding retained_intron MGP_C3HHeJ_T0060430.1 MGP_C3HHeJ_G0026920.1 mouse_genomes_project 3 51738994 51740229 - Nhlrc3 protein_coding retained_intron MGP_C3HHeJ_T0010464.1 MGP_C3HHeJ_G0008597.1 mouse_genomes_project 3 124107685 124107742 - Mir7657 miRNA miRNA MGP_C3HHeJ_T0062259.1 MGP_C3HHeJ_G0027337.1 mouse_genomes_project 3 97104557 97137721 - MGP_C3HHeJ_P0062259 Cd160 protein_coding protein_coding MGP_C3HHeJ_T0062260.1 MGP_C3HHeJ_G0027337.1 mouse_genomes_project 3 97104557 97137721 - MGP_C3HHeJ_P0062260 Cd160 protein_coding protein_coding MGP_C3HHeJ_T0062261.1 MGP_C3HHeJ_G0027337.1 mouse_genomes_project 3 97105949 97121139 - MGP_C3HHeJ_P0062261 Cd160 protein_coding protein_coding MGP_C3HHeJ_T0062262.1 MGP_C3HHeJ_G0027337.1 mouse_genomes_project 3 97106397 97115487 - MGP_C3HHeJ_P0062262 Cd160 protein_coding unknown_likely_coding MGP_C3HHeJ_T0014117.1 MGP_C3HHeJ_G0012221.1 mouse_genomes_project 3 121451600 121452408 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001157.1 MGP_C3HHeJ_G0001091.1 mouse_genomes_project 3 49791255 49791797 + TEC TEC MGP_C3HHeJ_T0100560.1 MGP_C3HHeJ_G0038754.1 mouse_genomes_project 3 89717513 89717645 + Gm23723 snoRNA snoRNA MGP_C3HHeJ_T0007545.1 MGP_C3HHeJ_G0006166.1 mouse_genomes_project 3 96624258 96632709 + lincRNA lincRNA MGP_C3HHeJ_T0100571.1 MGP_C3HHeJ_G0038765.1 mouse_genomes_project 3 113325097 113325223 - Gm25519 snoRNA snoRNA MGP_C3HHeJ_T0013789.1 MGP_C3HHeJ_G0011893.1 mouse_genomes_project 3 14658860 14659365 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013852.1 MGP_C3HHeJ_G0011956.1 mouse_genomes_project 3 37023596 37023969 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014021.1 MGP_C3HHeJ_G0012125.1 mouse_genomes_project 3 93175113 93175935 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007499.1 MGP_C3HHeJ_G0006134.1 mouse_genomes_project 3 79265461 79426408 + A330069K06Rik lincRNA lincRNA MGP_C3HHeJ_T0063670.1 MGP_C3HHeJ_G0027632.1 mouse_genomes_project 3 140535773 140569922 + MGP_C3HHeJ_P0063670 Eif4e protein_coding protein_coding MGP_C3HHeJ_T0063671.1 MGP_C3HHeJ_G0027632.1 mouse_genomes_project 3 140536019 140565633 + MGP_C3HHeJ_P0063671 Eif4e protein_coding protein_coding MGP_C3HHeJ_T0063672.1 MGP_C3HHeJ_G0027632.1 mouse_genomes_project 3 140536851 140566448 + MGP_C3HHeJ_P0063672 Eif4e protein_coding protein_coding MGP_C3HHeJ_T0063673.1 MGP_C3HHeJ_G0027632.1 mouse_genomes_project 3 140536851 140565792 + MGP_C3HHeJ_P0063673 Eif4e protein_coding protein_coding MGP_C3HHeJ_T0063674.1 MGP_C3HHeJ_G0027632.1 mouse_genomes_project 3 140536862 140565908 + MGP_C3HHeJ_P0063674 Eif4e protein_coding protein_coding MGP_C3HHeJ_T0063675.1 MGP_C3HHeJ_G0027632.1 mouse_genomes_project 3 140561090 140563959 + Eif4e protein_coding retained_intron MGP_C3HHeJ_T0007615.1 MGP_C3HHeJ_G0006223.1 mouse_genomes_project 3 132542380 132543351 + Gm42997 lincRNA lincRNA MGP_C3HHeJ_T0007616.1 MGP_C3HHeJ_G0006223.1 mouse_genomes_project 3 132542507 132587743 + Gm42997 lincRNA lincRNA MGP_C3HHeJ_T0014188.1 MGP_C3HHeJ_G0012292.1 mouse_genomes_project 3 142689984 142690237 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007495.1 MGP_C3HHeJ_G0006132.1 mouse_genomes_project 3 78485693 78486694 + 6430573P05Rik lincRNA lincRNA MGP_C3HHeJ_T0007496.1 MGP_C3HHeJ_G0006132.1 mouse_genomes_project 3 78485912 78488365 + 6430573P05Rik lincRNA lincRNA MGP_C3HHeJ_T0007497.1 MGP_C3HHeJ_G0006132.1 mouse_genomes_project 3 78486248 78487325 + 6430573P05Rik lincRNA lincRNA MGP_C3HHeJ_T0098464.1 MGP_C3HHeJ_G0036669.1 mouse_genomes_project 3 146366388 146368479 - Gm43445 sense_intronic sense_intronic MGP_C3HHeJ_T0017745.1 MGP_C3HHeJ_G0015272.1 mouse_genomes_project 3 94418688 94423020 - Gm36070 processed_transcript lincRNA MGP_C3HHeJ_T0017746.1 MGP_C3HHeJ_G0015272.1 mouse_genomes_project 3 94419507 94421390 - Gm36070 processed_transcript retained_intron MGP_C3HHeJ_T0099302.1 MGP_C3HHeJ_G0037496.1 mouse_genomes_project 3 121805516 121805622 - Gm23733 snRNA snRNA MGP_C3HHeJ_T0060635.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58966017 59099094 + MGP_C3HHeJ_P0060635 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060636.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58966229 59107232 + MGP_C3HHeJ_P0060636 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060637.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58966255 58968810 + Mbnl1 protein_coding retained_intron MGP_C3HHeJ_T0060638.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58966261 59125647 + MGP_C3HHeJ_P0060638 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060639.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58966264 59099079 + MGP_C3HHeJ_P0060639 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060640.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58988749 59050475 + Mbnl1 protein_coding processed_transcript MGP_C3HHeJ_T0060641.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58989034 59101431 + Mbnl1 protein_coding retained_intron MGP_C3HHeJ_T0060642.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58989051 59131745 + Mbnl1 protein_coding processed_transcript MGP_C3HHeJ_T0060643.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58989079 59050453 + Mbnl1 protein_coding processed_transcript MGP_C3HHeJ_T0060644.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58989079 59023133 + Mbnl1 protein_coding retained_intron MGP_C3HHeJ_T0060645.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58989092 59133934 + MGP_C3HHeJ_P0060645 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060646.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59019624 59020606 + Mbnl1 protein_coding processed_transcript MGP_C3HHeJ_T0060647.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59019878 59133936 + MGP_C3HHeJ_P0060647 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060648.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59020545 59133387 + MGP_C3HHeJ_P0060648 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060649.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59020545 59133951 + MGP_C3HHeJ_P0060649 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060650.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59021085 59123239 + Mbnl1 protein_coding retained_intron MGP_C3HHeJ_T0060651.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59021149 59129370 + Mbnl1 protein_coding processed_transcript MGP_C3HHeJ_T0060652.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59098970 59117598 + MGP_C3HHeJ_P0060652 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060653.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59099040 59131010 + MGP_C3HHeJ_P0060653 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060654.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59106875 59119969 + Mbnl1 protein_coding retained_intron MGP_C3HHeJ_T0060655.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59127466 59130726 + Mbnl1 protein_coding retained_intron MGP_C3HHeJ_T0060422.1 MGP_C3HHeJ_G0026919.1 mouse_genomes_project 3 51317663 51534174 + MGP_C3HHeJ_P0060422 Lhfp protein_coding protein_coding MGP_C3HHeJ_T0060423.1 MGP_C3HHeJ_G0026919.1 mouse_genomes_project 3 51317694 51534170 + Lhfp protein_coding processed_transcript MGP_C3HHeJ_T0060424.1 MGP_C3HHeJ_G0026919.1 mouse_genomes_project 3 51317718 51534174 + MGP_C3HHeJ_P0060424 Lhfp protein_coding protein_coding MGP_C3HHeJ_T0060425.1 MGP_C3HHeJ_G0026919.1 mouse_genomes_project 3 51501223 51504329 + Lhfp protein_coding retained_intron MGP_C3HHeJ_T0061803.1 MGP_C3HHeJ_G0027228.1 mouse_genomes_project 3 92600973 92602419 - MGP_C3HHeJ_P0061803 Gm38119 protein_coding protein_coding MGP_C3HHeJ_T0001355.1 MGP_C3HHeJ_G0001286.1 mouse_genomes_project 3 157801386 157804174 + TEC TEC MGP_C3HHeJ_T0001251.1 MGP_C3HHeJ_G0001183.1 mouse_genomes_project 3 109548688 109550861 - TEC TEC MGP_C3HHeJ_T0004337.1 MGP_C3HHeJ_G0003778.1 mouse_genomes_project 3 160311867 160318443 - Gm43159 antisense antisense MGP_C3HHeJ_T0013963.1 MGP_C3HHeJ_G0012067.1 mouse_genomes_project 3 71156809 71157028 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014066.1 MGP_C3HHeJ_G0012170.1 mouse_genomes_project 3 104492735 104493135 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013966.1 MGP_C3HHeJ_G0012070.1 mouse_genomes_project 3 73319188 73319525 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014090.1 MGP_C3HHeJ_G0012194.1 mouse_genomes_project 3 111620685 111621019 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007628.1 MGP_C3HHeJ_G0006234.1 mouse_genomes_project 3 135609119 135611841 - Gm6135 lincRNA lincRNA MGP_C3HHeJ_T0013792.1 MGP_C3HHeJ_G0011896.1 mouse_genomes_project 3 15807967 15808368 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007700.1 MGP_C3HHeJ_G0006291.1 mouse_genomes_project 3 158765002 158771136 - Gm42947 lincRNA lincRNA MGP_C3HHeJ_T0062747.1 MGP_C3HHeJ_G0027454.1 mouse_genomes_project 3 108578351 108579901 - Strip1 protein_coding retained_intron MGP_C3HHeJ_T0062748.1 MGP_C3HHeJ_G0027454.1 mouse_genomes_project 3 108578351 108597514 - MGP_C3HHeJ_P0062748 Strip1 protein_coding protein_coding MGP_C3HHeJ_T0062749.1 MGP_C3HHeJ_G0027454.1 mouse_genomes_project 3 108578354 108592664 - Strip1 protein_coding processed_transcript MGP_C3HHeJ_T0062750.1 MGP_C3HHeJ_G0027454.1 mouse_genomes_project 3 108582713 108585895 - Strip1 protein_coding processed_transcript MGP_C3HHeJ_T0062751.1 MGP_C3HHeJ_G0027454.1 mouse_genomes_project 3 108586271 108597514 - Strip1 protein_coding retained_intron MGP_C3HHeJ_T0007363.1 MGP_C3HHeJ_G0006034.1 mouse_genomes_project 3 5956688 5960019 - C230057A21Rik lincRNA lincRNA MGP_C3HHeJ_T0007364.1 MGP_C3HHeJ_G0006034.1 mouse_genomes_project 3 5956883 5960179 - C230057A21Rik lincRNA lincRNA MGP_C3HHeJ_T0007413.1 MGP_C3HHeJ_G0006070.1 mouse_genomes_project 3 32303057 32311002 - Gm42695 lincRNA lincRNA MGP_C3HHeJ_T0061862.1 MGP_C3HHeJ_G0027258.1 mouse_genomes_project 3 94548446 94559511 - MGP_C3HHeJ_P0061862 Riiad1 protein_coding protein_coding MGP_C3HHeJ_T0061863.1 MGP_C3HHeJ_G0027258.1 mouse_genomes_project 3 94548448 94567865 - Riiad1 protein_coding processed_transcript MGP_C3HHeJ_T0061864.1 MGP_C3HHeJ_G0027258.1 mouse_genomes_project 3 94552469 94558842 - Riiad1 protein_coding processed_transcript MGP_C3HHeJ_T0013769.1 MGP_C3HHeJ_G0011873.1 mouse_genomes_project 3 9019039 9020053 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010413.1 MGP_C3HHeJ_G0008546.1 mouse_genomes_project 3 15071112 15071221 + Mir124a-2 miRNA miRNA MGP_C3HHeJ_T0060656.1 MGP_C3HHeJ_G0026971.1 mouse_genomes_project 3 59548474 59554660 + MGP_C3HHeJ_P0060656 P2ry1 protein_coding protein_coding MGP_C3HHeJ_T0060657.1 MGP_C3HHeJ_G0026971.1 mouse_genomes_project 3 59548474 59554657 + MGP_C3HHeJ_P0060657 P2ry1 protein_coding protein_coding MGP_C3HHeJ_T0060658.1 MGP_C3HHeJ_G0026971.1 mouse_genomes_project 3 59548478 59550679 + MGP_C3HHeJ_P0060658 P2ry1 protein_coding protein_coding MGP_C3HHeJ_T0001312.1 MGP_C3HHeJ_G0001243.1 mouse_genomes_project 3 132365129 132368295 + TEC TEC MGP_C3HHeJ_T0062943.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110845558 111209007 - MGP_C3HHeJ_P0062943 Ntng1 protein_coding protein_coding MGP_C3HHeJ_T0062944.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110845564 111210014 - MGP_C3HHeJ_P0062944 Ntng1 protein_coding protein_coding MGP_C3HHeJ_T0062945.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110846633 111209478 - MGP_C3HHeJ_P0062945 Ntng1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062946.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110848200 111201538 - MGP_C3HHeJ_P0062946 Ntng1 protein_coding protein_coding MGP_C3HHeJ_T0062947.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110848200 111201538 - MGP_C3HHeJ_P0062947 Ntng1 protein_coding protein_coding MGP_C3HHeJ_T0062948.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110848200 111209698 - MGP_C3HHeJ_P0062948 Ntng1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062949.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110848200 111201538 - MGP_C3HHeJ_P0062949 Ntng1 protein_coding protein_coding MGP_C3HHeJ_T0062950.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110848200 111201538 - MGP_C3HHeJ_P0062950 Ntng1 protein_coding protein_coding MGP_C3HHeJ_T0062951.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110848200 111201538 - MGP_C3HHeJ_P0062951 Ntng1 protein_coding protein_coding MGP_C3HHeJ_T0062952.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110848200 111201538 - MGP_C3HHeJ_P0062952 Ntng1 protein_coding protein_coding MGP_C3HHeJ_T0062953.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110899263 110901575 - Ntng1 protein_coding retained_intron MGP_C3HHeJ_T0062954.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110899263 111201498 - Ntng1 protein_coding retained_intron MGP_C3HHeJ_T0062955.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 111209687 111210014 - MGP_C3HHeJ_P0062955 Ntng1 protein_coding protein_coding MGP_C3HHeJ_T0007533.1 MGP_C3HHeJ_G0006155.1 mouse_genomes_project 3 91931607 91933888 + Gm43736 lincRNA lincRNA MGP_C3HHeJ_T0063242.1 MGP_C3HHeJ_G0027554.1 mouse_genomes_project 3 125958005 125984321 - MGP_C3HHeJ_P0063242 1700006A11Rik protein_coding protein_coding MGP_C3HHeJ_T0063243.1 MGP_C3HHeJ_G0027554.1 mouse_genomes_project 3 125958240 125984272 - MGP_C3HHeJ_P0063243 1700006A11Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063702.1 MGP_C3HHeJ_G0027638.1 mouse_genomes_project 3 143912142 143956397 - MGP_C3HHeJ_P0063702 Bmpr1b protein_coding protein_coding MGP_C3HHeJ_T0063703.1 MGP_C3HHeJ_G0027638.1 mouse_genomes_project 3 143915320 144010146 - MGP_C3HHeJ_P0063703 Bmpr1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059664.1 MGP_C3HHeJ_G0026765.1 mouse_genomes_project 3 5726091 5778663 + MGP_C3HHeJ_P0059664 Stmn2 protein_coding protein_coding MGP_C3HHeJ_T0059665.1 MGP_C3HHeJ_G0026765.1 mouse_genomes_project 3 5726246 5765880 + Stmn2 protein_coding retained_intron MGP_C3HHeJ_T0059666.1 MGP_C3HHeJ_G0026765.1 mouse_genomes_project 3 5726317 5755070 + Stmn2 protein_coding retained_intron MGP_C3HHeJ_T0059667.1 MGP_C3HHeJ_G0026765.1 mouse_genomes_project 3 5777321 5778632 + Stmn2 protein_coding processed_transcript MGP_C3HHeJ_T0007455.1 MGP_C3HHeJ_G0006100.1 mouse_genomes_project 3 50358811 50453673 - Gm37202 lincRNA lincRNA MGP_C3HHeJ_T0014011.1 MGP_C3HHeJ_G0012115.1 mouse_genomes_project 3 90683987 90684290 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062280.1 MGP_C3HHeJ_G0027342.1 mouse_genomes_project 3 97493736 97511534 + MGP_C3HHeJ_P0062280 Acp6 protein_coding protein_coding MGP_C3HHeJ_T0062281.1 MGP_C3HHeJ_G0027342.1 mouse_genomes_project 3 97494055 97495355 + Acp6 protein_coding retained_intron MGP_C3HHeJ_T0062282.1 MGP_C3HHeJ_G0027342.1 mouse_genomes_project 3 97494062 97503270 + Acp6 protein_coding retained_intron MGP_C3HHeJ_T0062283.1 MGP_C3HHeJ_G0027342.1 mouse_genomes_project 3 97494062 97502009 + Acp6 protein_coding retained_intron MGP_C3HHeJ_T0062284.1 MGP_C3HHeJ_G0027342.1 mouse_genomes_project 3 97502336 97503412 + Acp6 protein_coding retained_intron MGP_C3HHeJ_T0062285.1 MGP_C3HHeJ_G0027342.1 mouse_genomes_project 3 97503053 97508829 + Acp6 protein_coding retained_intron MGP_C3HHeJ_T0062286.1 MGP_C3HHeJ_G0027342.1 mouse_genomes_project 3 97506109 97508858 + Acp6 protein_coding retained_intron MGP_C3HHeJ_T0062287.1 MGP_C3HHeJ_G0027342.1 mouse_genomes_project 3 97507601 97511478 + Acp6 protein_coding retained_intron MGP_C3HHeJ_T0062288.1 MGP_C3HHeJ_G0027342.1 mouse_genomes_project 3 97508968 97512259 + Acp6 protein_coding retained_intron MGP_C3HHeJ_T0001314.1 MGP_C3HHeJ_G0001245.1 mouse_genomes_project 3 132514627 132516978 - TEC TEC MGP_C3HHeJ_T0013770.1 MGP_C3HHeJ_G0011874.1 mouse_genomes_project 3 9729754 9730121 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101959.1 MGP_C3HHeJ_G0039924.1 mouse_genomes_project 3 89717745 89718496 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0061812.1 MGP_C3HHeJ_G0027237.1 mouse_genomes_project 3 92816265 92817513 + MGP_C3HHeJ_P0061812 protein_coding protein_coding MGP_C3HHeJ_T0004205.1 MGP_C3HHeJ_G0003692.1 mouse_genomes_project 3 88880639 88891579 + 4731419I09Rik antisense antisense MGP_C3HHeJ_T0061346.1 MGP_C3HHeJ_G0027122.1 mouse_genomes_project 3 88269228 88278558 + MGP_C3HHeJ_P0061346 Rit1 protein_coding protein_coding MGP_C3HHeJ_T0061347.1 MGP_C3HHeJ_G0027122.1 mouse_genomes_project 3 88269233 88271092 + Rit1 protein_coding retained_intron MGP_C3HHeJ_T0061348.1 MGP_C3HHeJ_G0027122.1 mouse_genomes_project 3 88269246 88283891 + MGP_C3HHeJ_P0061348 Rit1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061349.1 MGP_C3HHeJ_G0027122.1 mouse_genomes_project 3 88269250 88283899 + Rit1 protein_coding retained_intron MGP_C3HHeJ_T0061350.1 MGP_C3HHeJ_G0027122.1 mouse_genomes_project 3 88269251 88282397 + MGP_C3HHeJ_P0061350 Rit1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061351.1 MGP_C3HHeJ_G0027122.1 mouse_genomes_project 3 88269256 88283905 + MGP_C3HHeJ_P0061351 Rit1 protein_coding protein_coding MGP_C3HHeJ_T0061352.1 MGP_C3HHeJ_G0027122.1 mouse_genomes_project 3 88269263 88278508 + Rit1 protein_coding retained_intron MGP_C3HHeJ_T0007654.1 MGP_C3HHeJ_G0006256.1 mouse_genomes_project 3 145463545 145465511 + Gm43613 lincRNA lincRNA MGP_C3HHeJ_T0063186.1 MGP_C3HHeJ_G0027541.1 mouse_genomes_project 3 124104780 124129911 - MGP_C3HHeJ_P0063186 Fnbp1l protein_coding protein_coding MGP_C3HHeJ_T0063187.1 MGP_C3HHeJ_G0027541.1 mouse_genomes_project 3 124104786 124185898 - MGP_C3HHeJ_P0063187 Fnbp1l protein_coding protein_coding MGP_C3HHeJ_T0063188.1 MGP_C3HHeJ_G0027541.1 mouse_genomes_project 3 124108165 124185736 - MGP_C3HHeJ_P0063188 Fnbp1l protein_coding protein_coding MGP_C3HHeJ_T0063189.1 MGP_C3HHeJ_G0027541.1 mouse_genomes_project 3 124114097 124121140 - Fnbp1l protein_coding retained_intron MGP_C3HHeJ_T0063190.1 MGP_C3HHeJ_G0027541.1 mouse_genomes_project 3 124123946 124125282 - Fnbp1l protein_coding retained_intron MGP_C3HHeJ_T0098249.1 MGP_C3HHeJ_G0036461.1 mouse_genomes_project 3 13383841 13384170 - Gm25863 ribozyme ribozyme MGP_C3HHeJ_T0060872.1 MGP_C3HHeJ_G0027025.1 mouse_genomes_project 3 75000140 75085492 - MGP_C3HHeJ_P0060872 Golim4 protein_coding protein_coding MGP_C3HHeJ_T0060873.1 MGP_C3HHeJ_G0027025.1 mouse_genomes_project 3 75001239 75085512 - MGP_C3HHeJ_P0060873 Golim4 protein_coding protein_coding MGP_C3HHeJ_T0060874.1 MGP_C3HHeJ_G0027025.1 mouse_genomes_project 3 75001535 75004058 - Golim4 protein_coding retained_intron MGP_C3HHeJ_T0060875.1 MGP_C3HHeJ_G0027025.1 mouse_genomes_project 3 75002715 75085500 - MGP_C3HHeJ_P0060875 Golim4 protein_coding protein_coding MGP_C3HHeJ_T0060876.1 MGP_C3HHeJ_G0027025.1 mouse_genomes_project 3 75011844 75018060 - Golim4 protein_coding retained_intron MGP_C3HHeJ_T0060877.1 MGP_C3HHeJ_G0027025.1 mouse_genomes_project 3 75020239 75027827 - MGP_C3HHeJ_P0060877 Golim4 protein_coding protein_coding MGP_C3HHeJ_T0060878.1 MGP_C3HHeJ_G0027025.1 mouse_genomes_project 3 75024607 75085471 - Golim4 protein_coding retained_intron MGP_C3HHeJ_T0060879.1 MGP_C3HHeJ_G0027025.1 mouse_genomes_project 3 75037138 75085213 - Golim4 protein_coding retained_intron MGP_C3HHeJ_T0060880.1 MGP_C3HHeJ_G0027025.1 mouse_genomes_project 3 75083678 75085494 - Golim4 protein_coding retained_intron MGP_C3HHeJ_T0061575.1 MGP_C3HHeJ_G0027163.1 mouse_genomes_project 3 89429873 89484645 - MGP_C3HHeJ_P0061575 Il6ra protein_coding protein_coding MGP_C3HHeJ_T0061576.1 MGP_C3HHeJ_G0027163.1 mouse_genomes_project 3 89435287 89484611 - MGP_C3HHeJ_P0061576 Il6ra protein_coding protein_coding MGP_C3HHeJ_T0014106.1 MGP_C3HHeJ_G0012210.1 mouse_genomes_project 3 116766867 116768078 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063828.1 MGP_C3HHeJ_G0027665.1 mouse_genomes_project 3 148269091 148275908 + MGP_C3HHeJ_P0063828 2410004B18Rik protein_coding protein_coding MGP_C3HHeJ_T0063829.1 MGP_C3HHeJ_G0027665.1 mouse_genomes_project 3 148269119 148275906 + MGP_C3HHeJ_P0063829 2410004B18Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063830.1 MGP_C3HHeJ_G0027665.1 mouse_genomes_project 3 148269267 148274889 + MGP_C3HHeJ_P0063830 2410004B18Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063831.1 MGP_C3HHeJ_G0027665.1 mouse_genomes_project 3 148269313 148269865 + 2410004B18Rik protein_coding retained_intron MGP_C3HHeJ_T0063832.1 MGP_C3HHeJ_G0027665.1 mouse_genomes_project 3 148269362 148275321 + MGP_C3HHeJ_P0063832 2410004B18Rik protein_coding protein_coding MGP_C3HHeJ_T0063833.1 MGP_C3HHeJ_G0027665.1 mouse_genomes_project 3 148269721 148274932 + 2410004B18Rik protein_coding retained_intron MGP_C3HHeJ_T0063834.1 MGP_C3HHeJ_G0027665.1 mouse_genomes_project 3 148270163 148275277 + MGP_C3HHeJ_P0063834 2410004B18Rik protein_coding protein_coding MGP_C3HHeJ_T0014091.1 MGP_C3HHeJ_G0012195.1 mouse_genomes_project 3 112184452 112184769 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061794.1 MGP_C3HHeJ_G0027220.1 mouse_genomes_project 3 92478051 92479631 - MGP_C3HHeJ_P0061794 Lce6a protein_coding protein_coding MGP_C3HHeJ_T0061795.1 MGP_C3HHeJ_G0027220.1 mouse_genomes_project 3 92478055 92479151 - MGP_C3HHeJ_P0061795 Lce6a protein_coding protein_coding MGP_C3HHeJ_T0063622.1 MGP_C3HHeJ_G0027620.1 mouse_genomes_project 3 139923971 139976572 - MGP_C3HHeJ_P0063622 Dapp1 protein_coding protein_coding MGP_C3HHeJ_T0063623.1 MGP_C3HHeJ_G0027620.1 mouse_genomes_project 3 139925488 139949954 - Dapp1 protein_coding processed_transcript MGP_C3HHeJ_T0063624.1 MGP_C3HHeJ_G0027620.1 mouse_genomes_project 3 139925791 139948798 - Dapp1 protein_coding processed_transcript MGP_C3HHeJ_T0063625.1 MGP_C3HHeJ_G0027620.1 mouse_genomes_project 3 139925902 139976644 - Dapp1 protein_coding processed_transcript MGP_C3HHeJ_T0063626.1 MGP_C3HHeJ_G0027620.1 mouse_genomes_project 3 139943811 139948798 - Dapp1 protein_coding processed_transcript MGP_C3HHeJ_T0063627.1 MGP_C3HHeJ_G0027620.1 mouse_genomes_project 3 139975818 139976650 - Dapp1 protein_coding retained_intron MGP_C3HHeJ_T0001093.1 MGP_C3HHeJ_G0001027.1 mouse_genomes_project 3 26785989 26787345 + TEC TEC MGP_C3HHeJ_T0060560.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121311 56228531 + MGP_C3HHeJ_P0060560 Rnf13 protein_coding protein_coding MGP_C3HHeJ_T0060561.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121312 56166790 + MGP_C3HHeJ_P0060561 Rnf13 protein_coding protein_coding MGP_C3HHeJ_T0060562.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121324 56203378 + Rnf13 protein_coding processed_transcript MGP_C3HHeJ_T0060563.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121331 56227188 + Rnf13 protein_coding processed_transcript MGP_C3HHeJ_T0060564.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121331 56228533 + MGP_C3HHeJ_P0060564 Rnf13 protein_coding protein_coding MGP_C3HHeJ_T0060565.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121334 56219596 + MGP_C3HHeJ_P0060565 Rnf13 protein_coding protein_coding MGP_C3HHeJ_T0060566.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121362 56228419 + MGP_C3HHeJ_P0060566 Rnf13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060567.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121369 56155720 + MGP_C3HHeJ_P0060567 Rnf13 protein_coding protein_coding MGP_C3HHeJ_T0060568.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121369 56193860 + MGP_C3HHeJ_P0060568 Rnf13 protein_coding protein_coding MGP_C3HHeJ_T0060569.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121369 56226532 + MGP_C3HHeJ_P0060569 Rnf13 protein_coding protein_coding MGP_C3HHeJ_T0060570.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56192153 56196026 + Rnf13 protein_coding retained_intron MGP_C3HHeJ_T0059654.1 MGP_C3HHeJ_G0026762.1 mouse_genomes_project 3 4564715 4638097 + MGP_C3HHeJ_P0059654 Pkia protein_coding protein_coding MGP_C3HHeJ_T0059655.1 MGP_C3HHeJ_G0026762.1 mouse_genomes_project 3 4564716 4648430 + MGP_C3HHeJ_P0059655 Pkia protein_coding protein_coding MGP_C3HHeJ_T0059656.1 MGP_C3HHeJ_G0026762.1 mouse_genomes_project 3 4629659 4645476 + MGP_C3HHeJ_P0059656 Pkia protein_coding protein_coding MGP_C3HHeJ_T0062873.1 MGP_C3HHeJ_G0027483.1 mouse_genomes_project 3 109590385 109601212 + Taf13 protein_coding processed_transcript MGP_C3HHeJ_T0062874.1 MGP_C3HHeJ_G0027483.1 mouse_genomes_project 3 109590386 109601912 + Taf13 protein_coding processed_transcript MGP_C3HHeJ_T0062875.1 MGP_C3HHeJ_G0027483.1 mouse_genomes_project 3 109590398 109592043 + Taf13 protein_coding retained_intron MGP_C3HHeJ_T0062876.1 MGP_C3HHeJ_G0027483.1 mouse_genomes_project 3 109590409 109600338 + MGP_C3HHeJ_P0062876 Taf13 protein_coding protein_coding MGP_C3HHeJ_T0010479.1 MGP_C3HHeJ_G0008612.1 mouse_genomes_project 3 148751188 148751262 - Gm22901 miRNA miRNA MGP_C3HHeJ_T0060602.1 MGP_C3HHeJ_G0026958.1 mouse_genomes_project 3 57547044 57552424 - MGP_C3HHeJ_P0060602 Gpr171 protein_coding protein_coding MGP_C3HHeJ_T0014024.1 MGP_C3HHeJ_G0012128.1 mouse_genomes_project 3 93325599 93326151 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014049.1 MGP_C3HHeJ_G0012153.1 mouse_genomes_project 3 100109732 100110387 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014217.1 MGP_C3HHeJ_G0012321.1 mouse_genomes_project 3 158786318 158788601 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013905.1 MGP_C3HHeJ_G0012009.1 mouse_genomes_project 3 56152465 56153257 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098286.1 MGP_C3HHeJ_G0036498.1 mouse_genomes_project 3 61713536 61713678 + Gm22433 scaRNA scaRNA MGP_C3HHeJ_T0014104.1 MGP_C3HHeJ_G0012208.1 mouse_genomes_project 3 116066707 116067375 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062312.1 MGP_C3HHeJ_G0027348.1 mouse_genomes_project 3 98026155 98027819 - MGP_C3HHeJ_P0062312 Gm17651 protein_coding protein_coding MGP_C3HHeJ_T0004171.1 MGP_C3HHeJ_G0003667.1 mouse_genomes_project 3 53723928 53749581 - Gm42609 antisense antisense MGP_C3HHeJ_T0004172.1 MGP_C3HHeJ_G0003667.1 mouse_genomes_project 3 53726738 53747483 - Gm42609 antisense antisense MGP_C3HHeJ_T0098118.1 MGP_C3HHeJ_G0036330.1 mouse_genomes_project 3 7141943 7142052 - Gm24786 rRNA rRNA MGP_C3HHeJ_T0001278.1 MGP_C3HHeJ_G0001210.1 mouse_genomes_project 3 124800290 124802850 - TEC TEC MGP_C3HHeJ_T0099292.1 MGP_C3HHeJ_G0037486.1 mouse_genomes_project 3 97481216 97481326 - Gm24435 snRNA snRNA MGP_C3HHeJ_T0060914.1 MGP_C3HHeJ_G0027032.1 mouse_genomes_project 3 78842144 78845867 + MGP_C3HHeJ_P0060914 4930579G24Rik protein_coding protein_coding MGP_C3HHeJ_T0004225.1 MGP_C3HHeJ_G0003705.1 mouse_genomes_project 3 96108315 96125523 + C920021L13Rik antisense antisense MGP_C3HHeJ_T0004226.1 MGP_C3HHeJ_G0003705.1 mouse_genomes_project 3 96108318 96126660 + C920021L13Rik antisense antisense MGP_C3HHeJ_T0004227.1 MGP_C3HHeJ_G0003705.1 mouse_genomes_project 3 96108324 96111684 + C920021L13Rik antisense antisense MGP_C3HHeJ_T0063784.1 MGP_C3HHeJ_G0027654.1 mouse_genomes_project 3 147076318 147107223 - MGP_C3HHeJ_P0063784 Clca3b protein_coding protein_coding MGP_C3HHeJ_T0001191.1 MGP_C3HHeJ_G0001123.1 mouse_genomes_project 3 56071560 56072857 - TEC TEC MGP_C3HHeJ_T0010438.1 MGP_C3HHeJ_G0008571.1 mouse_genomes_project 3 87746844 87746931 + Mir3093 miRNA miRNA MGP_C3HHeJ_T0062722.1 MGP_C3HHeJ_G0027444.1 mouse_genomes_project 3 108159822 108170249 - MGP_C3HHeJ_P0062722 Cym protein_coding protein_coding MGP_C3HHeJ_T0061475.1 MGP_C3HHeJ_G0027141.1 mouse_genomes_project 3 88783568 88784796 + Krtcap2 protein_coding retained_intron MGP_C3HHeJ_T0061476.1 MGP_C3HHeJ_G0027141.1 mouse_genomes_project 3 88783568 88787509 + MGP_C3HHeJ_P0061476 Krtcap2 protein_coding protein_coding MGP_C3HHeJ_T0061477.1 MGP_C3HHeJ_G0027141.1 mouse_genomes_project 3 88784036 88787312 + MGP_C3HHeJ_P0061477 Krtcap2 protein_coding protein_coding MGP_C3HHeJ_T0061478.1 MGP_C3HHeJ_G0027141.1 mouse_genomes_project 3 88786465 88787325 + Krtcap2 protein_coding retained_intron MGP_C3HHeJ_T0060842.1 MGP_C3HHeJ_G0027017.1 mouse_genomes_project 3 71923197 72001264 - MGP_C3HHeJ_P0060842 Sis protein_coding protein_coding MGP_C3HHeJ_T0060843.1 MGP_C3HHeJ_G0027017.1 mouse_genomes_project 3 71923200 72000345 - MGP_C3HHeJ_P0060843 Sis protein_coding protein_coding MGP_C3HHeJ_T0060844.1 MGP_C3HHeJ_G0027017.1 mouse_genomes_project 3 71983563 71984695 - Sis protein_coding retained_intron MGP_C3HHeJ_T0060845.1 MGP_C3HHeJ_G0027017.1 mouse_genomes_project 3 71998492 72001261 - Sis protein_coding retained_intron MGP_C3HHeJ_T0062277.1 MGP_C3HHeJ_G0027341.1 mouse_genomes_project 3 97221045 97233826 - MGP_C3HHeJ_P0062277 Gja8 protein_coding protein_coding MGP_C3HHeJ_T0010424.1 MGP_C3HHeJ_G0008557.1 mouse_genomes_project 3 32691040 32691147 - Mir6378 miRNA miRNA MGP_C3HHeJ_T0062438.1 MGP_C3HHeJ_G0027383.1 mouse_genomes_project 3 103174621 103228350 + MGP_C3HHeJ_P0062438 Ngf protein_coding protein_coding MGP_C3HHeJ_T0062439.1 MGP_C3HHeJ_G0027383.1 mouse_genomes_project 3 103174630 103217343 + MGP_C3HHeJ_P0062439 Ngf protein_coding protein_coding MGP_C3HHeJ_T0062440.1 MGP_C3HHeJ_G0027383.1 mouse_genomes_project 3 103174630 103228515 + MGP_C3HHeJ_P0062440 Ngf protein_coding protein_coding MGP_C3HHeJ_T0062441.1 MGP_C3HHeJ_G0027383.1 mouse_genomes_project 3 103193338 103228497 + MGP_C3HHeJ_P0062441 Ngf protein_coding protein_coding MGP_C3HHeJ_T0060008.1 MGP_C3HHeJ_G0026848.1 mouse_genomes_project 3 29255732 29338040 - MGP_C3HHeJ_P0060008 protein_coding protein_coding MGP_C3HHeJ_T0100518.1 MGP_C3HHeJ_G0038712.1 mouse_genomes_project 3 4164123 4164236 + Gm22074 snoRNA snoRNA MGP_C3HHeJ_T0001144.1 MGP_C3HHeJ_G0001078.1 mouse_genomes_project 3 48781930 48783262 - TEC TEC MGP_C3HHeJ_T0013836.1 MGP_C3HHeJ_G0011940.1 mouse_genomes_project 3 34238501 34239048 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061193.1 MGP_C3HHeJ_G0027098.1 mouse_genomes_project 3 87589162 87599150 - MGP_C3HHeJ_P0061193 Ttc24 protein_coding protein_coding MGP_C3HHeJ_T0061194.1 MGP_C3HHeJ_G0027098.1 mouse_genomes_project 3 87589565 87591825 - MGP_C3HHeJ_P0061194 Ttc24 protein_coding protein_coding MGP_C3HHeJ_T0001163.1 MGP_C3HHeJ_G0001096.1 mouse_genomes_project 3 50087046 50088258 - TEC TEC MGP_C3HHeJ_T0004197.1 MGP_C3HHeJ_G0003686.1 mouse_genomes_project 3 86188709 86199307 - Gm37876 antisense antisense MGP_C3HHeJ_T0009374.1 MGP_C3HHeJ_G0007507.1 mouse_genomes_project 3 147243341 147254114 + Gm43742 macro_lncRNA macro_lncRNA MGP_C3HHeJ_T0062871.1 MGP_C3HHeJ_G0027482.1 mouse_genomes_project 3 109574095 109579834 - MGP_C3HHeJ_P0062871 protein_coding protein_coding MGP_C3HHeJ_T0062872.1 MGP_C3HHeJ_G0027482.1 mouse_genomes_project 3 109574095 109580130 - MGP_C3HHeJ_P0062872 protein_coding protein_coding MGP_C3HHeJ_T0007434.1 MGP_C3HHeJ_G0006087.1 mouse_genomes_project 3 36508830 36510138 + Gm43538 lincRNA lincRNA MGP_C3HHeJ_T0063575.1 MGP_C3HHeJ_G0027610.1 mouse_genomes_project 3 137748539 137814160 + MGP_C3HHeJ_P0063575 Slc39a8 protein_coding protein_coding MGP_C3HHeJ_T0063576.1 MGP_C3HHeJ_G0027610.1 mouse_genomes_project 3 137748914 137784160 + Slc39a8 protein_coding retained_intron MGP_C3HHeJ_T0063577.1 MGP_C3HHeJ_G0027610.1 mouse_genomes_project 3 137748917 137814340 + MGP_C3HHeJ_P0063577 Slc39a8 protein_coding protein_coding MGP_C3HHeJ_T0063578.1 MGP_C3HHeJ_G0027610.1 mouse_genomes_project 3 137749026 137814338 + MGP_C3HHeJ_P0063578 Slc39a8 protein_coding protein_coding MGP_C3HHeJ_T0063579.1 MGP_C3HHeJ_G0027610.1 mouse_genomes_project 3 137750023 137814152 + MGP_C3HHeJ_P0063579 Slc39a8 protein_coding protein_coding MGP_C3HHeJ_T0063580.1 MGP_C3HHeJ_G0027610.1 mouse_genomes_project 3 137809919 137814334 + Slc39a8 protein_coding retained_intron MGP_C3HHeJ_T0062507.1 MGP_C3HHeJ_G0027394.1 mouse_genomes_project 3 104034798 104130002 + MGP_C3HHeJ_P0062507 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062508.1 MGP_C3HHeJ_G0027394.1 mouse_genomes_project 3 104081156 104098844 + MGP_C3HHeJ_P0062508 protein_coding protein_coding MGP_C3HHeJ_T0062509.1 MGP_C3HHeJ_G0027394.1 mouse_genomes_project 3 104091154 104096117 + protein_coding retained_intron MGP_C3HHeJ_T0062510.1 MGP_C3HHeJ_G0027394.1 mouse_genomes_project 3 104095773 104097126 + protein_coding retained_intron MGP_C3HHeJ_T0062511.1 MGP_C3HHeJ_G0027394.1 mouse_genomes_project 3 104095865 104125579 + MGP_C3HHeJ_P0062511 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010470.1 MGP_C3HHeJ_G0008603.1 mouse_genomes_project 3 131454141 131454300 - Gm24515 miRNA miRNA MGP_C3HHeJ_T0060399.1 MGP_C3HHeJ_G0026914.1 mouse_genomes_project 3 49721864 49769215 - MGP_C3HHeJ_P0060399 Setd7 protein_coding protein_coding MGP_C3HHeJ_T0060400.1 MGP_C3HHeJ_G0026914.1 mouse_genomes_project 3 49737403 49744620 - Setd7 protein_coding retained_intron MGP_C3HHeJ_T0060401.1 MGP_C3HHeJ_G0026914.1 mouse_genomes_project 3 49743473 49745101 - Setd7 protein_coding retained_intron MGP_C3HHeJ_T0060402.1 MGP_C3HHeJ_G0026914.1 mouse_genomes_project 3 49757052 49759690 - Setd7 protein_coding retained_intron MGP_C3HHeJ_T0014155.1 MGP_C3HHeJ_G0012259.1 mouse_genomes_project 3 134830019 134830448 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013832.1 MGP_C3HHeJ_G0011936.1 mouse_genomes_project 3 33668290 33669279 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099312.1 MGP_C3HHeJ_G0037506.1 mouse_genomes_project 3 139906198 139906297 - Gm25920 snRNA snRNA MGP_C3HHeJ_T0010471.1 MGP_C3HHeJ_G0008604.1 mouse_genomes_project 3 135980630 135980721 - Gm44361 miRNA miRNA MGP_C3HHeJ_T0101945.1 MGP_C3HHeJ_G0039910.1 mouse_genomes_project 3 58058070 58083878 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007583.1 MGP_C3HHeJ_G0006199.1 mouse_genomes_project 3 116973403 116974982 + Gm9889 lincRNA lincRNA MGP_C3HHeJ_T0007584.1 MGP_C3HHeJ_G0006199.1 mouse_genomes_project 3 116973403 116974981 + Gm9889 lincRNA pseudogene MGP_C3HHeJ_T0098405.1 MGP_C3HHeJ_G0036611.1 mouse_genomes_project 3 78760446 78762372 - sense_intronic sense_intronic MGP_C3HHeJ_T0013826.1 MGP_C3HHeJ_G0011930.1 mouse_genomes_project 3 31397015 31397373 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014182.1 MGP_C3HHeJ_G0012286.1 mouse_genomes_project 3 140659477 140659666 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060533.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 53965443 54532038 - MGP_C3HHeJ_P0060533 Nbea protein_coding protein_coding MGP_C3HHeJ_T0060534.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 53965447 54035047 - Nbea protein_coding processed_transcript MGP_C3HHeJ_T0060535.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 53966768 54133437 - Nbea protein_coding processed_transcript MGP_C3HHeJ_T0060536.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 54040466 54069455 - Nbea protein_coding retained_intron MGP_C3HHeJ_T0060537.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 54125256 54134480 - Nbea protein_coding retained_intron MGP_C3HHeJ_T0060538.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 54126165 54130025 - Nbea protein_coding retained_intron MGP_C3HHeJ_T0060540.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 54307977 54315303 - Nbea protein_coding retained_intron MGP_C3HHeJ_T0060541.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 54348161 54350586 - Nbea protein_coding retained_intron MGP_C3HHeJ_T0060542.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 54364281 54367356 - Nbea protein_coding retained_intron MGP_C3HHeJ_T0060543.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 54374122 54382513 - Nbea protein_coding retained_intron MGP_C3HHeJ_T0014112.1 MGP_C3HHeJ_G0012216.1 mouse_genomes_project 3 118446794 118447475 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063398.1 MGP_C3HHeJ_G0027578.1 mouse_genomes_project 3 131697841 131757422 - MGP_C3HHeJ_P0063398 Ccdc109b protein_coding protein_coding MGP_C3HHeJ_T0063399.1 MGP_C3HHeJ_G0027578.1 mouse_genomes_project 3 131697856 131757264 - MGP_C3HHeJ_P0063399 Ccdc109b protein_coding protein_coding MGP_C3HHeJ_T0063400.1 MGP_C3HHeJ_G0027578.1 mouse_genomes_project 3 131699961 131757205 - MGP_C3HHeJ_P0063400 Ccdc109b protein_coding protein_coding MGP_C3HHeJ_T0063401.1 MGP_C3HHeJ_G0027578.1 mouse_genomes_project 3 131709313 131757340 - MGP_C3HHeJ_P0063401 Ccdc109b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062153.1 MGP_C3HHeJ_G0027305.1 mouse_genomes_project 3 96168519 96187273 + MGP_C3HHeJ_P0062153 Anp32e protein_coding protein_coding MGP_C3HHeJ_T0062154.1 MGP_C3HHeJ_G0027305.1 mouse_genomes_project 3 96168524 96187343 + MGP_C3HHeJ_P0062154 Anp32e protein_coding protein_coding MGP_C3HHeJ_T0062155.1 MGP_C3HHeJ_G0027305.1 mouse_genomes_project 3 96168566 96187150 + MGP_C3HHeJ_P0062155 Anp32e protein_coding protein_coding MGP_C3HHeJ_T0062156.1 MGP_C3HHeJ_G0027305.1 mouse_genomes_project 3 96168627 96188977 + MGP_C3HHeJ_P0062156 Anp32e protein_coding protein_coding MGP_C3HHeJ_T0062157.1 MGP_C3HHeJ_G0027305.1 mouse_genomes_project 3 96168782 96187255 + MGP_C3HHeJ_P0062157 Anp32e protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062158.1 MGP_C3HHeJ_G0027305.1 mouse_genomes_project 3 96168823 96187026 + MGP_C3HHeJ_P0062158 Anp32e protein_coding protein_coding MGP_C3HHeJ_T0062159.1 MGP_C3HHeJ_G0027305.1 mouse_genomes_project 3 96168838 96189099 + MGP_C3HHeJ_P0062159 Anp32e protein_coding protein_coding MGP_C3HHeJ_T0062160.1 MGP_C3HHeJ_G0027305.1 mouse_genomes_project 3 96169777 96178351 + MGP_C3HHeJ_P0062160 Anp32e protein_coding protein_coding MGP_C3HHeJ_T0062161.1 MGP_C3HHeJ_G0027305.1 mouse_genomes_project 3 96185911 96187231 + Anp32e protein_coding retained_intron MGP_C3HHeJ_T0062526.1 MGP_C3HHeJ_G0027398.1 mouse_genomes_project 3 104534484 104541503 + MGP_C3HHeJ_P0062526 protein_coding protein_coding MGP_C3HHeJ_T0007467.1 MGP_C3HHeJ_G0006111.1 mouse_genomes_project 3 55981591 55996417 - Gm26671 lincRNA lincRNA MGP_C3HHeJ_T0007468.1 MGP_C3HHeJ_G0006111.1 mouse_genomes_project 3 55991564 55996478 - Gm26671 lincRNA lincRNA MGP_C3HHeJ_T0007469.1 MGP_C3HHeJ_G0006111.1 mouse_genomes_project 3 55991918 55996448 - Gm26671 lincRNA lincRNA MGP_C3HHeJ_T0007470.1 MGP_C3HHeJ_G0006111.1 mouse_genomes_project 3 55993483 55996484 - Gm26671 lincRNA lincRNA MGP_C3HHeJ_T0001267.1 MGP_C3HHeJ_G0001199.1 mouse_genomes_project 3 122935780 122939145 - TEC TEC MGP_C3HHeJ_T0007398.1 MGP_C3HHeJ_G0006056.1 mouse_genomes_project 3 20421653 20424628 + Gm37021 lincRNA lincRNA MGP_C3HHeJ_T0010475.1 MGP_C3HHeJ_G0008608.1 mouse_genomes_project 3 139755478 139755559 - Mir6380 miRNA miRNA MGP_C3HHeJ_T0001357.1 MGP_C3HHeJ_G0001288.1 mouse_genomes_project 3 159467398 159468730 + TEC TEC MGP_C3HHeJ_T0061201.1 MGP_C3HHeJ_G0027100.1 mouse_genomes_project 3 87670679 87701917 + MGP_C3HHeJ_P0061201 Mef2d protein_coding protein_coding MGP_C3HHeJ_T0061202.1 MGP_C3HHeJ_G0027100.1 mouse_genomes_project 3 87670723 87699762 + MGP_C3HHeJ_P0061202 Mef2d protein_coding protein_coding MGP_C3HHeJ_T0061203.1 MGP_C3HHeJ_G0027100.1 mouse_genomes_project 3 87670879 87698487 + MGP_C3HHeJ_P0061203 Mef2d protein_coding protein_coding MGP_C3HHeJ_T0061204.1 MGP_C3HHeJ_G0027100.1 mouse_genomes_project 3 87670879 87698487 + MGP_C3HHeJ_P0061204 Mef2d protein_coding protein_coding MGP_C3HHeJ_T0061205.1 MGP_C3HHeJ_G0027100.1 mouse_genomes_project 3 87670881 87684548 + Mef2d protein_coding retained_intron MGP_C3HHeJ_T0061206.1 MGP_C3HHeJ_G0027100.1 mouse_genomes_project 3 87691504 87698617 + Mef2d protein_coding processed_transcript MGP_C3HHeJ_T0061207.1 MGP_C3HHeJ_G0027100.1 mouse_genomes_project 3 87698083 87698738 + Mef2d protein_coding processed_transcript MGP_C3HHeJ_T0001232.1 MGP_C3HHeJ_G0001164.1 mouse_genomes_project 3 96181275 96183755 + TEC TEC MGP_C3HHeJ_T0063361.1 MGP_C3HHeJ_G0027570.1 mouse_genomes_project 3 131302127 131407760 + MGP_C3HHeJ_P0063361 Elovl6 protein_coding protein_coding MGP_C3HHeJ_T0063362.1 MGP_C3HHeJ_G0027570.1 mouse_genomes_project 3 131321872 131397613 + MGP_C3HHeJ_P0063362 Elovl6 protein_coding protein_coding MGP_C3HHeJ_T0060852.1 MGP_C3HHeJ_G0027020.1 mouse_genomes_project 3 74148308 74256934 - MGP_C3HHeJ_P0060852 Zbbx protein_coding protein_coding MGP_C3HHeJ_T0060853.1 MGP_C3HHeJ_G0027020.1 mouse_genomes_project 3 74148319 74256892 - MGP_C3HHeJ_P0060853 Zbbx protein_coding protein_coding MGP_C3HHeJ_T0060854.1 MGP_C3HHeJ_G0027020.1 mouse_genomes_project 3 74170919 74256865 - MGP_C3HHeJ_P0060854 Zbbx protein_coding protein_coding MGP_C3HHeJ_T0060855.1 MGP_C3HHeJ_G0027020.1 mouse_genomes_project 3 74188250 74256934 - MGP_C3HHeJ_P0060855 Zbbx protein_coding protein_coding MGP_C3HHeJ_T0060856.1 MGP_C3HHeJ_G0027020.1 mouse_genomes_project 3 74222339 74280076 - MGP_C3HHeJ_P0060856 Zbbx protein_coding protein_coding MGP_C3HHeJ_T0007494.1 MGP_C3HHeJ_G0006131.1 mouse_genomes_project 3 75084663 75137971 + Gm37256 lincRNA lincRNA MGP_C3HHeJ_T0007419.1 MGP_C3HHeJ_G0006075.1 mouse_genomes_project 3 33391269 33440767 - Gm6639 lincRNA lincRNA MGP_C3HHeJ_T0001240.1 MGP_C3HHeJ_G0001172.1 mouse_genomes_project 3 97959351 97963254 + TEC TEC MGP_C3HHeJ_T0004170.1 MGP_C3HHeJ_G0003666.1 mouse_genomes_project 3 53397189 53428502 + 4931419H13Rik antisense antisense MGP_C3HHeJ_T0001113.1 MGP_C3HHeJ_G0001047.1 mouse_genomes_project 3 33646324 33646883 + TEC TEC MGP_C3HHeJ_T0001221.1 MGP_C3HHeJ_G0001153.1 mouse_genomes_project 3 84570198 84571454 - TEC TEC MGP_C3HHeJ_T0098288.1 MGP_C3HHeJ_G0036500.1 mouse_genomes_project 3 88245280 88245408 + Gm25820 scaRNA scaRNA MGP_C3HHeJ_T0013924.1 MGP_C3HHeJ_G0012028.1 mouse_genomes_project 3 61312158 61312740 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060556.1 MGP_C3HHeJ_G0026947.1 mouse_genomes_project 3 56033198 56068179 - MGP_C3HHeJ_P0060556 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060557.1 MGP_C3HHeJ_G0026947.1 mouse_genomes_project 3 56033242 56067726 - MGP_C3HHeJ_P0060557 protein_coding unknown_likely_coding MGP_C3HHeJ_T0060558.1 MGP_C3HHeJ_G0026947.1 mouse_genomes_project 3 56040107 56067915 - MGP_C3HHeJ_P0060558 protein_coding protein_coding MGP_C3HHeJ_T0060559.1 MGP_C3HHeJ_G0026947.1 mouse_genomes_project 3 56041947 56067917 - MGP_C3HHeJ_P0060559 protein_coding protein_coding MGP_C3HHeJ_T0061093.1 MGP_C3HHeJ_G0027078.1 mouse_genomes_project 3 86822634 86838218 + MGP_C3HHeJ_P0061093 Fcrl1 protein_coding protein_coding MGP_C3HHeJ_T0061094.1 MGP_C3HHeJ_G0027078.1 mouse_genomes_project 3 86822636 86838611 + MGP_C3HHeJ_P0061094 Fcrl1 protein_coding protein_coding MGP_C3HHeJ_T0061095.1 MGP_C3HHeJ_G0027078.1 mouse_genomes_project 3 86822695 86838612 + MGP_C3HHeJ_P0061095 Fcrl1 protein_coding protein_coding MGP_C3HHeJ_T0061096.1 MGP_C3HHeJ_G0027078.1 mouse_genomes_project 3 86822707 86854024 + MGP_C3HHeJ_P0061096 Fcrl1 protein_coding protein_coding MGP_C3HHeJ_T0061097.1 MGP_C3HHeJ_G0027078.1 mouse_genomes_project 3 86822714 86838232 + MGP_C3HHeJ_P0061097 Fcrl1 protein_coding protein_coding MGP_C3HHeJ_T0061098.1 MGP_C3HHeJ_G0027078.1 mouse_genomes_project 3 86822742 86837769 + MGP_C3HHeJ_P0061098 Fcrl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0061099.1 MGP_C3HHeJ_G0027078.1 mouse_genomes_project 3 86832105 86838576 + Fcrl1 protein_coding retained_intron MGP_C3HHeJ_T0098430.1 MGP_C3HHeJ_G0036635.1 mouse_genomes_project 3 103843420 103844540 + Gm43063 sense_intronic sense_intronic MGP_C3HHeJ_T0014058.1 MGP_C3HHeJ_G0012162.1 mouse_genomes_project 3 102768485 102768763 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001248.1 MGP_C3HHeJ_G0001180.1 mouse_genomes_project 3 108846248 108846934 + TEC TEC MGP_C3HHeJ_T0060579.1 MGP_C3HHeJ_G0026951.1 mouse_genomes_project 3 56939773 56945855 - MGP_C3HHeJ_P0060579 Serp1 protein_coding protein_coding MGP_C3HHeJ_T0013834.1 MGP_C3HHeJ_G0011938.1 mouse_genomes_project 3 34027863 34028819 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007622.1 MGP_C3HHeJ_G0006228.1 mouse_genomes_project 3 132749185 132750538 - Gm43349 lincRNA lincRNA MGP_C3HHeJ_T0014034.1 MGP_C3HHeJ_G0012138.1 mouse_genomes_project 3 96131703 96135096 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061804.1 MGP_C3HHeJ_G0027229.1 mouse_genomes_project 3 92626245 92628096 - MGP_C3HHeJ_P0061804 Lce1h protein_coding protein_coding MGP_C3HHeJ_T0062761.1 MGP_C3HHeJ_G0027457.1 mouse_genomes_project 3 108707974 108727394 - MGP_C3HHeJ_P0062761 Csf1 protein_coding protein_coding MGP_C3HHeJ_T0062762.1 MGP_C3HHeJ_G0027457.1 mouse_genomes_project 3 108707974 108727161 - MGP_C3HHeJ_P0062762 Csf1 protein_coding protein_coding MGP_C3HHeJ_T0062763.1 MGP_C3HHeJ_G0027457.1 mouse_genomes_project 3 108709940 108717906 - MGP_C3HHeJ_P0062763 Csf1 protein_coding protein_coding MGP_C3HHeJ_T0062764.1 MGP_C3HHeJ_G0027457.1 mouse_genomes_project 3 108712521 108727167 - MGP_C3HHeJ_P0062764 Csf1 protein_coding protein_coding MGP_C3HHeJ_T0062765.1 MGP_C3HHeJ_G0027457.1 mouse_genomes_project 3 108714659 108727167 - Csf1 protein_coding retained_intron MGP_C3HHeJ_T0062766.1 MGP_C3HHeJ_G0027457.1 mouse_genomes_project 3 108715468 108717668 - MGP_C3HHeJ_P0062766 Csf1 protein_coding protein_coding MGP_C3HHeJ_T0062767.1 MGP_C3HHeJ_G0027457.1 mouse_genomes_project 3 108717306 108727146 - MGP_C3HHeJ_P0062767 Csf1 protein_coding protein_coding MGP_C3HHeJ_T0062383.1 MGP_C3HHeJ_G0027369.1 mouse_genomes_project 3 101181666 101307764 - MGP_C3HHeJ_P0062383 Man1a2 protein_coding protein_coding MGP_C3HHeJ_T0062384.1 MGP_C3HHeJ_G0027369.1 mouse_genomes_project 3 101208638 101272758 - Man1a2 protein_coding processed_transcript MGP_C3HHeJ_T0062385.1 MGP_C3HHeJ_G0027369.1 mouse_genomes_project 3 101239481 101306873 - MGP_C3HHeJ_P0062385 Man1a2 protein_coding protein_coding MGP_C3HHeJ_T0062386.1 MGP_C3HHeJ_G0027369.1 mouse_genomes_project 3 101264730 101307386 - MGP_C3HHeJ_P0062386 Man1a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062387.1 MGP_C3HHeJ_G0027369.1 mouse_genomes_project 3 101276226 101307569 - Man1a2 protein_coding processed_transcript MGP_C3HHeJ_T0062388.1 MGP_C3HHeJ_G0027369.1 mouse_genomes_project 3 101306853 101307720 - Man1a2 protein_coding processed_transcript MGP_C3HHeJ_T0059917.1 MGP_C3HHeJ_G0026831.1 mouse_genomes_project 3 26323350 26340859 + MGP_C3HHeJ_P0059917 Eif5a2 protein_coding protein_coding MGP_C3HHeJ_T0001222.1 MGP_C3HHeJ_G0001154.1 mouse_genomes_project 3 85299517 85301057 + TEC TEC MGP_C3HHeJ_T0007420.1 MGP_C3HHeJ_G0006076.1 mouse_genomes_project 3 34085745 34088079 - Gm43204 lincRNA lincRNA MGP_C3HHeJ_T0017727.1 MGP_C3HHeJ_G0015264.1 mouse_genomes_project 3 43237907 43346508 - processed_transcript lincRNA MGP_C3HHeJ_T0017728.1 MGP_C3HHeJ_G0015264.1 mouse_genomes_project 3 43238820 43330858 - processed_transcript lincRNA MGP_C3HHeJ_T0017729.1 MGP_C3HHeJ_G0015264.1 mouse_genomes_project 3 43298793 43346453 - processed_transcript retained_intron MGP_C3HHeJ_T0014200.1 MGP_C3HHeJ_G0012304.1 mouse_genomes_project 3 147105648 147106285 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013753.1 MGP_C3HHeJ_G0011857.1 mouse_genomes_project 3 5535339 5541045 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014029.1 MGP_C3HHeJ_G0012133.1 mouse_genomes_project 3 95598314 95598714 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007362.1 MGP_C3HHeJ_G0006033.1 mouse_genomes_project 3 5845314 5850371 + Gm32496 lincRNA lincRNA MGP_C3HHeJ_T0099283.1 MGP_C3HHeJ_G0037477.1 mouse_genomes_project 3 95258779 95258886 + Gm22301 snRNA snRNA MGP_C3HHeJ_T0059715.1 MGP_C3HHeJ_G0026782.1 mouse_genomes_project 3 7710933 7740408 + MGP_C3HHeJ_P0059715 Chmp4c protein_coding protein_coding MGP_C3HHeJ_T0059716.1 MGP_C3HHeJ_G0026782.1 mouse_genomes_project 3 7710984 7774995 + MGP_C3HHeJ_P0059716 Chmp4c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062297.1 MGP_C3HHeJ_G0027344.1 mouse_genomes_project 3 97757871 97758834 - MGP_C3HHeJ_P0062297 Olfr1402 protein_coding protein_coding MGP_C3HHeJ_T0007677.1 MGP_C3HHeJ_G0006276.1 mouse_genomes_project 3 149808644 149813021 + Gm37041 lincRNA lincRNA MGP_C3HHeJ_T0062390.1 MGP_C3HHeJ_G0027371.1 mouse_genomes_project 3 101562426 101571956 + MGP_C3HHeJ_P0062390 Trim45 protein_coding protein_coding MGP_C3HHeJ_T0062391.1 MGP_C3HHeJ_G0027371.1 mouse_genomes_project 3 101562699 101574265 + MGP_C3HHeJ_P0062391 Trim45 protein_coding protein_coding MGP_C3HHeJ_T0062392.1 MGP_C3HHeJ_G0027371.1 mouse_genomes_project 3 101562717 101577173 + MGP_C3HHeJ_P0062392 Trim45 protein_coding protein_coding MGP_C3HHeJ_T0062393.1 MGP_C3HHeJ_G0027371.1 mouse_genomes_project 3 101563144 101572311 + MGP_C3HHeJ_P0062393 Trim45 protein_coding protein_coding MGP_C3HHeJ_T0013768.1 MGP_C3HHeJ_G0011872.1 mouse_genomes_project 3 8377811 8378000 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007439.1 MGP_C3HHeJ_G0006091.1 mouse_genomes_project 3 39239848 39254918 + Gm30852 lincRNA lincRNA MGP_C3HHeJ_T0007440.1 MGP_C3HHeJ_G0006091.1 mouse_genomes_project 3 39253402 39280079 + Gm30852 lincRNA lincRNA MGP_C3HHeJ_T0007451.1 MGP_C3HHeJ_G0006097.1 mouse_genomes_project 3 47243589 47262415 + Gm31415 lincRNA lincRNA MGP_C3HHeJ_T0013808.1 MGP_C3HHeJ_G0011912.1 mouse_genomes_project 3 19716832 19718763 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007501.1 MGP_C3HHeJ_G0006136.1 mouse_genomes_project 3 80202034 80212050 + Gm42468 lincRNA lincRNA MGP_C3HHeJ_T0099319.1 MGP_C3HHeJ_G0037513.1 mouse_genomes_project 3 158505562 158505666 - Gm23038 snRNA snRNA MGP_C3HHeJ_T0007459.1 MGP_C3HHeJ_G0006104.1 mouse_genomes_project 3 51005276 51053088 + Gm2447 lincRNA lincRNA MGP_C3HHeJ_T0007460.1 MGP_C3HHeJ_G0006104.1 mouse_genomes_project 3 51037584 51053086 + Gm2447 lincRNA lincRNA MGP_C3HHeJ_T0001195.1 MGP_C3HHeJ_G0001127.1 mouse_genomes_project 3 58112031 58114438 + TEC TEC MGP_C3HHeJ_T0063131.1 MGP_C3HHeJ_G0027532.1 mouse_genomes_project 3 122971856 122973240 - Slc44a3 protein_coding processed_transcript MGP_C3HHeJ_T0063132.1 MGP_C3HHeJ_G0027532.1 mouse_genomes_project 3 122971856 123045091 - MGP_C3HHeJ_P0063132 Slc44a3 protein_coding protein_coding MGP_C3HHeJ_T0063133.1 MGP_C3HHeJ_G0027532.1 mouse_genomes_project 3 123032458 123039800 - Slc44a3 protein_coding processed_transcript MGP_C3HHeJ_T0013872.1 MGP_C3HHeJ_G0011976.1 mouse_genomes_project 3 45152153 45153156 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060246.1 MGP_C3HHeJ_G0026888.1 mouse_genomes_project 3 35491888 35496580 + MGP_C3HHeJ_P0060246 Spry1 protein_coding protein_coding MGP_C3HHeJ_T0060247.1 MGP_C3HHeJ_G0026888.1 mouse_genomes_project 3 35491899 35496580 + MGP_C3HHeJ_P0060247 Spry1 protein_coding protein_coding MGP_C3HHeJ_T0060248.1 MGP_C3HHeJ_G0026888.1 mouse_genomes_project 3 35492021 35496580 + MGP_C3HHeJ_P0060248 Spry1 protein_coding protein_coding MGP_C3HHeJ_T0001090.1 MGP_C3HHeJ_G0001024.1 mouse_genomes_project 3 25036859 25038083 + TEC TEC MGP_C3HHeJ_T0001353.1 MGP_C3HHeJ_G0001284.1 mouse_genomes_project 3 156925351 156927347 - TEC TEC MGP_C3HHeJ_T0098427.1 MGP_C3HHeJ_G0036632.1 mouse_genomes_project 3 102829948 102831236 + Gm43244 sense_intronic sense_intronic MGP_C3HHeJ_T0013812.1 MGP_C3HHeJ_G0011916.1 mouse_genomes_project 3 22589579 22589759 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014159.1 MGP_C3HHeJ_G0012263.1 mouse_genomes_project 3 136208642 136209141 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007538.1 MGP_C3HHeJ_G0006160.1 mouse_genomes_project 3 94747316 94845577 + lincRNA lincRNA MGP_C3HHeJ_T0014191.1 MGP_C3HHeJ_G0012295.1 mouse_genomes_project 3 144265828 144266168 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007555.1 MGP_C3HHeJ_G0006176.1 mouse_genomes_project 3 101315250 101322918 + Gm43464 lincRNA lincRNA MGP_C3HHeJ_T0100540.1 MGP_C3HHeJ_G0038734.1 mouse_genomes_project 3 55425694 55425824 + Gm22269 snoRNA snoRNA MGP_C3HHeJ_T0013902.1 MGP_C3HHeJ_G0012006.1 mouse_genomes_project 3 55725354 55726401 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014041.1 MGP_C3HHeJ_G0012145.1 mouse_genomes_project 3 98555498 98557688 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010437.1 MGP_C3HHeJ_G0008570.1 mouse_genomes_project 3 84854415 84854535 + Mir466k miRNA miRNA MGP_C3HHeJ_T0001345.1 MGP_C3HHeJ_G0001276.1 mouse_genomes_project 3 154969042 154971354 - TEC TEC MGP_C3HHeJ_T0004180.1 MGP_C3HHeJ_G0003674.1 mouse_genomes_project 3 62581770 62587789 + Gm26850 antisense antisense MGP_C3HHeJ_T0004181.1 MGP_C3HHeJ_G0003674.1 mouse_genomes_project 3 62581772 62583588 + Gm26850 antisense antisense MGP_C3HHeJ_T0059724.1 MGP_C3HHeJ_G0026785.1 mouse_genomes_project 3 11904840 11931914 + MGP_C3HHeJ_P0059724 Slc7a12 protein_coding protein_coding MGP_C3HHeJ_T0059725.1 MGP_C3HHeJ_G0026785.1 mouse_genomes_project 3 11904843 11931808 + MGP_C3HHeJ_P0059725 Slc7a12 protein_coding protein_coding MGP_C3HHeJ_T0059726.1 MGP_C3HHeJ_G0026785.1 mouse_genomes_project 3 11904916 11931808 + MGP_C3HHeJ_P0059726 Slc7a12 protein_coding protein_coding MGP_C3HHeJ_T0062752.1 MGP_C3HHeJ_G0027455.1 mouse_genomes_project 3 108597141 108598860 + MGP_C3HHeJ_P0062752 Gm10961 protein_coding protein_coding MGP_C3HHeJ_T0061285.1 MGP_C3HHeJ_G0027114.1 mouse_genomes_project 3 88079126 88088161 + MGP_C3HHeJ_P0061285 Mex3a protein_coding protein_coding MGP_C3HHeJ_T0059895.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784557 26208740 + MGP_C3HHeJ_P0059895 Tnik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059896.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784558 26214014 + MGP_C3HHeJ_P0059896 Tnik protein_coding protein_coding MGP_C3HHeJ_T0059897.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784619 25884047 + Tnik protein_coding retained_intron MGP_C3HHeJ_T0059898.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784619 26027654 + Tnik protein_coding retained_intron MGP_C3HHeJ_T0059899.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784906 26204605 + Tnik protein_coding retained_intron MGP_C3HHeJ_T0059900.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784906 26206378 + MGP_C3HHeJ_P0059900 Tnik protein_coding protein_coding MGP_C3HHeJ_T0059901.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784906 26206378 + MGP_C3HHeJ_P0059901 Tnik protein_coding protein_coding MGP_C3HHeJ_T0059902.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784925 25786220 + Tnik protein_coding retained_intron MGP_C3HHeJ_T0059903.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784986 26206137 + MGP_C3HHeJ_P0059903 Tnik protein_coding protein_coding MGP_C3HHeJ_T0059904.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784986 26206137 + MGP_C3HHeJ_P0059904 Tnik protein_coding protein_coding MGP_C3HHeJ_T0059905.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784986 26206137 + MGP_C3HHeJ_P0059905 Tnik protein_coding protein_coding MGP_C3HHeJ_T0059906.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784986 26206137 + MGP_C3HHeJ_P0059906 Tnik protein_coding protein_coding MGP_C3HHeJ_T0059907.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784986 26206137 + MGP_C3HHeJ_P0059907 Tnik protein_coding protein_coding MGP_C3HHeJ_T0059908.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25937982 26120017 + Tnik protein_coding processed_transcript MGP_C3HHeJ_T0059909.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 26062641 26064456 + Tnik protein_coding retained_intron MGP_C3HHeJ_T0059910.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 26153001 26161567 + Tnik protein_coding retained_intron MGP_C3HHeJ_T0059911.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 26181622 26204101 + Tnik protein_coding retained_intron MGP_C3HHeJ_T0059912.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 26205000 26206904 + Tnik protein_coding retained_intron MGP_C3HHeJ_T0062589.1 MGP_C3HHeJ_G0027410.1 mouse_genomes_project 3 105617008 105627149 - MGP_C3HHeJ_P0062589 Fam19a3 protein_coding protein_coding MGP_C3HHeJ_T0062590.1 MGP_C3HHeJ_G0027410.1 mouse_genomes_project 3 105626962 105631444 - Fam19a3 protein_coding processed_transcript MGP_C3HHeJ_T0062276.1 MGP_C3HHeJ_G0027340.1 mouse_genomes_project 3 97212152 97400358 + MGP_C3HHeJ_P0062276 Gja5 protein_coding protein_coding MGP_C3HHeJ_T0062278.1 MGP_C3HHeJ_G0027340.1 mouse_genomes_project 3 97345105 97363533 + MGP_C3HHeJ_P0062278 Gja5 protein_coding protein_coding MGP_C3HHeJ_T0062279.1 MGP_C3HHeJ_G0027340.1 mouse_genomes_project 3 97345105 97366309 + MGP_C3HHeJ_P0062279 Gja5 protein_coding protein_coding MGP_C3HHeJ_T0001212.1 MGP_C3HHeJ_G0001144.1 mouse_genomes_project 3 75080686 75082863 + TEC TEC MGP_C3HHeJ_T0099268.1 MGP_C3HHeJ_G0037462.1 mouse_genomes_project 3 85379700 85379762 - Gm24501 snRNA snRNA MGP_C3HHeJ_T0059881.1 MGP_C3HHeJ_G0026824.1 mouse_genomes_project 3 24862451 24869113 + MGP_C3HHeJ_P0059881 Ghsr protein_coding protein_coding MGP_C3HHeJ_T0063815.1 MGP_C3HHeJ_G0027661.1 mouse_genomes_project 3 147873866 147906304 + MGP_C3HHeJ_P0063815 Znhit6 protein_coding protein_coding MGP_C3HHeJ_T0063816.1 MGP_C3HHeJ_G0027661.1 mouse_genomes_project 3 147873893 147906986 + MGP_C3HHeJ_P0063816 Znhit6 protein_coding protein_coding MGP_C3HHeJ_T0063817.1 MGP_C3HHeJ_G0027661.1 mouse_genomes_project 3 147873908 147876192 + MGP_C3HHeJ_P0063817 Znhit6 protein_coding protein_coding MGP_C3HHeJ_T0063818.1 MGP_C3HHeJ_G0027661.1 mouse_genomes_project 3 147873919 147896575 + MGP_C3HHeJ_P0063818 Znhit6 protein_coding protein_coding MGP_C3HHeJ_T0063819.1 MGP_C3HHeJ_G0027661.1 mouse_genomes_project 3 147873935 147880298 + MGP_C3HHeJ_P0063819 Znhit6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063820.1 MGP_C3HHeJ_G0027661.1 mouse_genomes_project 3 147873997 147893591 + MGP_C3HHeJ_P0063820 Znhit6 protein_coding protein_coding MGP_C3HHeJ_T0063821.1 MGP_C3HHeJ_G0027661.1 mouse_genomes_project 3 147897777 147906203 + Znhit6 protein_coding retained_intron MGP_C3HHeJ_T0060437.1 MGP_C3HHeJ_G0026923.1 mouse_genomes_project 3 51795803 51946393 - MGP_C3HHeJ_P0060437 Frem2 protein_coding protein_coding MGP_C3HHeJ_T0060438.1 MGP_C3HHeJ_G0026923.1 mouse_genomes_project 3 51797549 51826324 - Frem2 protein_coding processed_transcript MGP_C3HHeJ_T0060439.1 MGP_C3HHeJ_G0026923.1 mouse_genomes_project 3 51797653 51805702 - Frem2 protein_coding retained_intron MGP_C3HHeJ_T0060440.1 MGP_C3HHeJ_G0026923.1 mouse_genomes_project 3 51935335 51941268 - Frem2 protein_coding retained_intron MGP_C3HHeJ_T0098415.1 MGP_C3HHeJ_G0036620.1 mouse_genomes_project 3 99700642 99705004 + Gm43024 sense_intronic sense_intronic MGP_C3HHeJ_T0059777.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16532569 16619640 - MGP_C3HHeJ_P0059777 Pde7a protein_coding protein_coding MGP_C3HHeJ_T0059778.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16534140 16573550 - MGP_C3HHeJ_P0059778 Pde7a protein_coding protein_coding MGP_C3HHeJ_T0059779.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16536843 16539487 - Pde7a protein_coding retained_intron MGP_C3HHeJ_T0059780.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16537180 16542989 - Pde7a protein_coding processed_transcript MGP_C3HHeJ_T0059781.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16539747 16568783 - MGP_C3HHeJ_P0059781 Pde7a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059782.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16539819 16545889 - Pde7a protein_coding retained_intron MGP_C3HHeJ_T0059783.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16543264 16619371 - MGP_C3HHeJ_P0059783 Pde7a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059784.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16545840 16573507 - MGP_C3HHeJ_P0059784 Pde7a protein_coding protein_coding MGP_C3HHeJ_T0059785.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16565235 16619623 - Pde7a protein_coding retained_intron MGP_C3HHeJ_T0059786.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16565333 16619222 - Pde7a protein_coding processed_transcript MGP_C3HHeJ_T0013857.1 MGP_C3HHeJ_G0011961.1 mouse_genomes_project 3 38747233 38747504 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007388.1 MGP_C3HHeJ_G0006047.1 mouse_genomes_project 3 15629403 15733463 - lincRNA lincRNA MGP_C3HHeJ_T0061859.1 MGP_C3HHeJ_G0027257.1 mouse_genomes_project 3 94517056 94520574 + Mrpl9 protein_coding retained_intron MGP_C3HHeJ_T0061860.1 MGP_C3HHeJ_G0027257.1 mouse_genomes_project 3 94517063 94525644 + MGP_C3HHeJ_P0061860 Mrpl9 protein_coding protein_coding MGP_C3HHeJ_T0061861.1 MGP_C3HHeJ_G0027257.1 mouse_genomes_project 3 94517075 94528150 + MGP_C3HHeJ_P0061861 Mrpl9 protein_coding protein_coding MGP_C3HHeJ_T0060628.1 MGP_C3HHeJ_G0026966.1 mouse_genomes_project 3 58390018 58403683 + MGP_C3HHeJ_P0060628 C130079G13Rik protein_coding protein_coding MGP_C3HHeJ_T0059837.1 MGP_C3HHeJ_G0026816.1 mouse_genomes_project 3 17654738 17710431 - MGP_C3HHeJ_P0059837 Agtr1b protein_coding protein_coding MGP_C3HHeJ_T0059838.1 MGP_C3HHeJ_G0026816.1 mouse_genomes_project 3 17655162 17710378 - MGP_C3HHeJ_P0059838 Agtr1b protein_coding protein_coding MGP_C3HHeJ_T0013998.1 MGP_C3HHeJ_G0012102.1 mouse_genomes_project 3 86457506 86458453 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062215.1 MGP_C3HHeJ_G0027327.1 mouse_genomes_project 3 96897505 96924530 + MGP_C3HHeJ_P0062215 Lix1l protein_coding protein_coding MGP_C3HHeJ_T0062216.1 MGP_C3HHeJ_G0027327.1 mouse_genomes_project 3 96916188 96920001 + Lix1l protein_coding retained_intron MGP_C3HHeJ_T0063647.1 MGP_C3HHeJ_G0027627.1 mouse_genomes_project 3 140256488 140275985 + Adh1 protein_coding processed_transcript MGP_C3HHeJ_T0063648.1 MGP_C3HHeJ_G0027627.1 mouse_genomes_project 3 140270585 140283897 + MGP_C3HHeJ_P0063648 Adh1 protein_coding protein_coding MGP_C3HHeJ_T0063649.1 MGP_C3HHeJ_G0027627.1 mouse_genomes_project 3 140270736 140274149 + Adh1 protein_coding retained_intron MGP_C3HHeJ_T0063650.1 MGP_C3HHeJ_G0027627.1 mouse_genomes_project 3 140270742 140283897 + MGP_C3HHeJ_P0063650 Adh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063907.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151243280 151256283 - MGP_C3HHeJ_P0063907 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063908.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151243283 151383508 - MGP_C3HHeJ_P0063908 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063909.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151243548 151288721 - MGP_C3HHeJ_P0063909 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063910.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151243553 151250683 - MGP_C3HHeJ_P0063910 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063911.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151243768 151383407 - MGP_C3HHeJ_P0063911 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063912.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151243785 151419285 - MGP_C3HHeJ_P0063912 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063913.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151243785 151419285 - MGP_C3HHeJ_P0063913 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063914.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151244632 151383523 - MGP_C3HHeJ_P0063914 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063915.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151244785 151383536 - MGP_C3HHeJ_P0063915 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063916.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151244785 151383536 - MGP_C3HHeJ_P0063916 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063917.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151244785 151383536 - MGP_C3HHeJ_P0063917 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063918.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151244785 151383536 - MGP_C3HHeJ_P0063918 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063919.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151245414 151261657 - MGP_C3HHeJ_P0063919 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063920.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151245437 151263116 - MGP_C3HHeJ_P0063920 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063921.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151245456 151254098 - MGP_C3HHeJ_P0063921 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063922.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151248023 151252878 - Adgrl2 protein_coding retained_intron MGP_C3HHeJ_T0063923.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151254873 151263250 - Adgrl2 protein_coding retained_intron MGP_C3HHeJ_T0063924.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151289538 151383384 - MGP_C3HHeJ_P0063924 Adgrl2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0063925.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151318023 151418046 - Adgrl2 protein_coding retained_intron MGP_C3HHeJ_T0063926.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151382708 151418212 - Adgrl2 protein_coding retained_intron MGP_C3HHeJ_T0099241.1 MGP_C3HHeJ_G0037435.1 mouse_genomes_project 3 30717670 30717828 + Gm23214 snRNA snRNA MGP_C3HHeJ_T0014030.1 MGP_C3HHeJ_G0012134.1 mouse_genomes_project 3 95660333 95660685 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062548.1 MGP_C3HHeJ_G0027403.1 mouse_genomes_project 3 104629193 104635266 + MGP_C3HHeJ_P0062548 Bcl2l15 protein_coding protein_coding MGP_C3HHeJ_T0062549.1 MGP_C3HHeJ_G0027403.1 mouse_genomes_project 3 104629363 104652975 + MGP_C3HHeJ_P0062549 Bcl2l15 protein_coding protein_coding MGP_C3HHeJ_T0062550.1 MGP_C3HHeJ_G0027403.1 mouse_genomes_project 3 104629424 104642879 + MGP_C3HHeJ_P0062550 Bcl2l15 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062551.1 MGP_C3HHeJ_G0027403.1 mouse_genomes_project 3 104645247 104652183 + Bcl2l15 protein_coding processed_transcript MGP_C3HHeJ_T0062552.1 MGP_C3HHeJ_G0027403.1 mouse_genomes_project 3 104650319 104652016 + Bcl2l15 protein_coding processed_transcript MGP_C3HHeJ_T0063418.1 MGP_C3HHeJ_G0027581.1 mouse_genomes_project 3 132427406 132448800 + MGP_C3HHeJ_P0063418 Etnppl protein_coding protein_coding MGP_C3HHeJ_T0063419.1 MGP_C3HHeJ_G0027581.1 mouse_genomes_project 3 132427527 132451478 + MGP_C3HHeJ_P0063419 Etnppl protein_coding protein_coding MGP_C3HHeJ_T0063420.1 MGP_C3HHeJ_G0027581.1 mouse_genomes_project 3 132427530 132435623 + Etnppl protein_coding retained_intron MGP_C3HHeJ_T0063421.1 MGP_C3HHeJ_G0027581.1 mouse_genomes_project 3 132427557 132435641 + Etnppl protein_coding retained_intron MGP_C3HHeJ_T0063422.1 MGP_C3HHeJ_G0027581.1 mouse_genomes_project 3 132427652 132448668 + MGP_C3HHeJ_P0063422 Etnppl protein_coding protein_coding MGP_C3HHeJ_T0063423.1 MGP_C3HHeJ_G0027581.1 mouse_genomes_project 3 132440509 132443714 + MGP_C3HHeJ_P0063423 Etnppl protein_coding protein_coding MGP_C3HHeJ_T0014114.1 MGP_C3HHeJ_G0012218.1 mouse_genomes_project 3 118571152 118571530 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001234.1 MGP_C3HHeJ_G0001166.1 mouse_genomes_project 3 96728407 96731272 - TEC TEC MGP_C3HHeJ_T0007389.1 MGP_C3HHeJ_G0006048.1 mouse_genomes_project 3 15742044 15754269 - 4930433B08Rik lincRNA lincRNA MGP_C3HHeJ_T0001327.1 MGP_C3HHeJ_G0001258.1 mouse_genomes_project 3 137572584 137576481 - TEC TEC MGP_C3HHeJ_T0098121.1 MGP_C3HHeJ_G0036333.1 mouse_genomes_project 3 37529090 37529209 - n-R5s195 rRNA rRNA MGP_C3HHeJ_T0014209.1 MGP_C3HHeJ_G0012313.1 mouse_genomes_project 3 154554460 154555167 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013907.1 MGP_C3HHeJ_G0012011.1 mouse_genomes_project 3 56339390 56339624 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061046.1 MGP_C3HHeJ_G0027065.1 mouse_genomes_project 3 84971256 85051324 + MGP_C3HHeJ_P0061046 Gatb protein_coding protein_coding MGP_C3HHeJ_T0061047.1 MGP_C3HHeJ_G0027065.1 mouse_genomes_project 3 84971256 85042264 + MGP_C3HHeJ_P0061047 Gatb protein_coding protein_coding MGP_C3HHeJ_T0061048.1 MGP_C3HHeJ_G0027065.1 mouse_genomes_project 3 84971264 85048519 + MGP_C3HHeJ_P0061048 Gatb protein_coding protein_coding MGP_C3HHeJ_T0061049.1 MGP_C3HHeJ_G0027065.1 mouse_genomes_project 3 84971269 84973179 + Gatb protein_coding processed_transcript MGP_C3HHeJ_T0061050.1 MGP_C3HHeJ_G0027065.1 mouse_genomes_project 3 84971281 85049537 + MGP_C3HHeJ_P0061050 Gatb protein_coding unknown_likely_coding MGP_C3HHeJ_T0061051.1 MGP_C3HHeJ_G0027065.1 mouse_genomes_project 3 84971332 85049843 + Gatb protein_coding processed_transcript MGP_C3HHeJ_T0062062.1 MGP_C3HHeJ_G0027291.1 mouse_genomes_project 3 95768605 95804474 + MGP_C3HHeJ_P0062062 Hormad1 protein_coding protein_coding MGP_C3HHeJ_T0062063.1 MGP_C3HHeJ_G0027291.1 mouse_genomes_project 3 95768606 95803029 + MGP_C3HHeJ_P0062063 Hormad1 protein_coding protein_coding MGP_C3HHeJ_T0062064.1 MGP_C3HHeJ_G0027291.1 mouse_genomes_project 3 95768606 95801310 + MGP_C3HHeJ_P0062064 Hormad1 protein_coding protein_coding MGP_C3HHeJ_T0062065.1 MGP_C3HHeJ_G0027291.1 mouse_genomes_project 3 95768606 95802954 + MGP_C3HHeJ_P0062065 Hormad1 protein_coding protein_coding MGP_C3HHeJ_T0014198.1 MGP_C3HHeJ_G0012302.1 mouse_genomes_project 3 146928846 146929371 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001106.1 MGP_C3HHeJ_G0001040.1 mouse_genomes_project 3 31105891 31107357 - TEC TEC MGP_C3HHeJ_T0060766.1 MGP_C3HHeJ_G0026997.1 mouse_genomes_project 3 66259258 66305711 + MGP_C3HHeJ_P0060766 Gfm1 protein_coding protein_coding MGP_C3HHeJ_T0060767.1 MGP_C3HHeJ_G0026997.1 mouse_genomes_project 3 66259278 66287988 + Gfm1 protein_coding processed_transcript MGP_C3HHeJ_T0060768.1 MGP_C3HHeJ_G0026997.1 mouse_genomes_project 3 66259401 66287236 + MGP_C3HHeJ_P0060768 Gfm1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0060769.1 MGP_C3HHeJ_G0026997.1 mouse_genomes_project 3 66285661 66303986 + Gfm1 protein_coding retained_intron MGP_C3HHeJ_T0011451.1 MGP_C3HHeJ_G0009584.1 mouse_genomes_project 3 101364380 101364642 - Gm23465 misc_RNA misc_RNA MGP_C3HHeJ_T0001185.1 MGP_C3HHeJ_G0001117.1 mouse_genomes_project 3 54360868 54362840 - TEC TEC MGP_C3HHeJ_T0014150.1 MGP_C3HHeJ_G0012254.1 mouse_genomes_project 3 132756443 132757744 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001088.1 MGP_C3HHeJ_G0001022.1 mouse_genomes_project 3 20152280 20152531 + TEC TEC MGP_C3HHeJ_T0059737.1 MGP_C3HHeJ_G0026788.1 mouse_genomes_project 3 12036138 12041136 - MGP_C3HHeJ_P0059737 1810022K09Rik protein_coding protein_coding MGP_C3HHeJ_T0059738.1 MGP_C3HHeJ_G0026788.1 mouse_genomes_project 3 12036143 12041072 - MGP_C3HHeJ_P0059738 1810022K09Rik protein_coding protein_coding MGP_C3HHeJ_T0059739.1 MGP_C3HHeJ_G0026788.1 mouse_genomes_project 3 12036143 12041112 - MGP_C3HHeJ_P0059739 1810022K09Rik protein_coding protein_coding MGP_C3HHeJ_T0059740.1 MGP_C3HHeJ_G0026788.1 mouse_genomes_project 3 12036147 12041105 - MGP_C3HHeJ_P0059740 1810022K09Rik protein_coding protein_coding MGP_C3HHeJ_T0059741.1 MGP_C3HHeJ_G0026788.1 mouse_genomes_project 3 12039034 12041094 - 1810022K09Rik protein_coding retained_intron MGP_C3HHeJ_T0060011.1 MGP_C3HHeJ_G0026850.1 mouse_genomes_project 3 29996589 30029556 - MGP_C3HHeJ_P0060011 Zmat3 protein_coding protein_coding MGP_C3HHeJ_T0060012.1 MGP_C3HHeJ_G0026850.1 mouse_genomes_project 3 29996593 30029498 - MGP_C3HHeJ_P0060012 Zmat3 protein_coding protein_coding MGP_C3HHeJ_T0060013.1 MGP_C3HHeJ_G0026850.1 mouse_genomes_project 3 30024958 30029338 - MGP_C3HHeJ_P0060013 Zmat3 protein_coding protein_coding MGP_C3HHeJ_T0060014.1 MGP_C3HHeJ_G0026850.1 mouse_genomes_project 3 30026072 30029898 - Zmat3 protein_coding retained_intron MGP_C3HHeJ_T0059727.1 MGP_C3HHeJ_G0026786.1 mouse_genomes_project 3 11962265 12000878 + MGP_C3HHeJ_P0059727 Lrrcc1 protein_coding protein_coding MGP_C3HHeJ_T0059728.1 MGP_C3HHeJ_G0026786.1 mouse_genomes_project 3 11962300 11996774 + MGP_C3HHeJ_P0059728 Lrrcc1 protein_coding protein_coding MGP_C3HHeJ_T0059729.1 MGP_C3HHeJ_G0026786.1 mouse_genomes_project 3 11962301 11994576 + MGP_C3HHeJ_P0059729 Lrrcc1 protein_coding protein_coding MGP_C3HHeJ_T0059730.1 MGP_C3HHeJ_G0026786.1 mouse_genomes_project 3 11962356 11990636 + MGP_C3HHeJ_P0059730 Lrrcc1 protein_coding protein_coding MGP_C3HHeJ_T0059731.1 MGP_C3HHeJ_G0026786.1 mouse_genomes_project 3 11962411 11979945 + MGP_C3HHeJ_P0059731 Lrrcc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059732.1 MGP_C3HHeJ_G0026786.1 mouse_genomes_project 3 11976588 11994879 + MGP_C3HHeJ_P0059732 Lrrcc1 protein_coding protein_coding MGP_C3HHeJ_T0059733.1 MGP_C3HHeJ_G0026786.1 mouse_genomes_project 3 11976664 11982945 + MGP_C3HHeJ_P0059733 Lrrcc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059734.1 MGP_C3HHeJ_G0026786.1 mouse_genomes_project 3 11978851 11987798 + MGP_C3HHeJ_P0059734 Lrrcc1 protein_coding protein_coding MGP_C3HHeJ_T0014073.1 MGP_C3HHeJ_G0012177.1 mouse_genomes_project 3 106916880 106917309 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060571.1 MGP_C3HHeJ_G0026949.1 mouse_genomes_project 3 56235194 56241379 - MGP_C3HHeJ_P0060571 Pfn2 protein_coding protein_coding MGP_C3HHeJ_T0060572.1 MGP_C3HHeJ_G0026949.1 mouse_genomes_project 3 56235204 56240445 - MGP_C3HHeJ_P0060572 Pfn2 protein_coding protein_coding MGP_C3HHeJ_T0060573.1 MGP_C3HHeJ_G0026949.1 mouse_genomes_project 3 56236407 56239178 - MGP_C3HHeJ_P0060573 Pfn2 protein_coding protein_coding MGP_C3HHeJ_T0060574.1 MGP_C3HHeJ_G0026949.1 mouse_genomes_project 3 56237960 56240849 - MGP_C3HHeJ_P0060574 Pfn2 protein_coding protein_coding MGP_C3HHeJ_T0010423.1 MGP_C3HHeJ_G0008556.1 mouse_genomes_project 3 32382715 32382794 + Mir1897 miRNA miRNA MGP_C3HHeJ_T0061967.1 MGP_C3HHeJ_G0027273.1 mouse_genomes_project 3 95291548 95292489 - Scnm1 protein_coding retained_intron MGP_C3HHeJ_T0061968.1 MGP_C3HHeJ_G0027273.1 mouse_genomes_project 3 95291549 95295395 - Scnm1 protein_coding retained_intron MGP_C3HHeJ_T0061969.1 MGP_C3HHeJ_G0027273.1 mouse_genomes_project 3 95291551 95292118 - Scnm1 protein_coding retained_intron MGP_C3HHeJ_T0061970.1 MGP_C3HHeJ_G0027273.1 mouse_genomes_project 3 95291553 95292291 - Scnm1 protein_coding retained_intron MGP_C3HHeJ_T0061971.1 MGP_C3HHeJ_G0027273.1 mouse_genomes_project 3 95291555 95292887 - Scnm1 protein_coding processed_transcript MGP_C3HHeJ_T0061972.1 MGP_C3HHeJ_G0027273.1 mouse_genomes_project 3 95291558 95295633 - MGP_C3HHeJ_P0061972 Scnm1 protein_coding protein_coding MGP_C3HHeJ_T0061973.1 MGP_C3HHeJ_G0027273.1 mouse_genomes_project 3 95291613 95295517 - MGP_C3HHeJ_P0061973 Scnm1 protein_coding protein_coding MGP_C3HHeJ_T0061974.1 MGP_C3HHeJ_G0027273.1 mouse_genomes_project 3 95292122 95295561 - Scnm1 protein_coding retained_intron MGP_C3HHeJ_T0004151.1 MGP_C3HHeJ_G0003651.1 mouse_genomes_project 3 33801336 33809582 + Mccc1os antisense antisense MGP_C3HHeJ_T0004152.1 MGP_C3HHeJ_G0003651.1 mouse_genomes_project 3 33801416 33813721 + Mccc1os antisense antisense MGP_C3HHeJ_T0004153.1 MGP_C3HHeJ_G0003651.1 mouse_genomes_project 3 33801938 33829812 + Mccc1os antisense antisense MGP_C3HHeJ_T0098466.1 MGP_C3HHeJ_G0036671.1 mouse_genomes_project 3 146709711 146710484 - Gm43560 sense_intronic sense_intronic MGP_C3HHeJ_T0001174.1 MGP_C3HHeJ_G0001106.1 mouse_genomes_project 3 51347958 51351056 - TEC TEC MGP_C3HHeJ_T0004163.1 MGP_C3HHeJ_G0003660.1 mouse_genomes_project 3 50032691 50039055 + Gm37229 antisense antisense MGP_C3HHeJ_T0059913.1 MGP_C3HHeJ_G0026829.1 mouse_genomes_project 3 26237678 26270567 + MGP_C3HHeJ_P0059913 Slc2a2 protein_coding protein_coding MGP_C3HHeJ_T0059914.1 MGP_C3HHeJ_G0026829.1 mouse_genomes_project 3 26237792 26266673 + MGP_C3HHeJ_P0059914 Slc2a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059915.1 MGP_C3HHeJ_G0026829.1 mouse_genomes_project 3 26260884 26267522 + Slc2a2 protein_coding retained_intron MGP_C3HHeJ_T0013869.1 MGP_C3HHeJ_G0011973.1 mouse_genomes_project 3 43768468 43768727 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059971.1 MGP_C3HHeJ_G0026841.1 mouse_genomes_project 3 28377708 28406253 + MGP_C3HHeJ_P0059971 Sec62 protein_coding protein_coding MGP_C3HHeJ_T0059972.1 MGP_C3HHeJ_G0026841.1 mouse_genomes_project 3 28378169 28386547 + Sec62 protein_coding retained_intron MGP_C3HHeJ_T0059973.1 MGP_C3HHeJ_G0026841.1 mouse_genomes_project 3 28403840 28405022 + Sec62 protein_coding processed_transcript MGP_C3HHeJ_T0007666.1 MGP_C3HHeJ_G0006267.1 mouse_genomes_project 3 146057544 146058449 + Gm42708 lincRNA lincRNA MGP_C3HHeJ_T0062306.1 MGP_C3HHeJ_G0027347.1 mouse_genomes_project 3 98011310 98023924 + MGP_C3HHeJ_P0062306 Prkab2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062307.1 MGP_C3HHeJ_G0027347.1 mouse_genomes_project 3 98011329 98026937 + MGP_C3HHeJ_P0062307 Prkab2 protein_coding protein_coding MGP_C3HHeJ_T0062308.1 MGP_C3HHeJ_G0027347.1 mouse_genomes_project 3 98011331 98024058 + MGP_C3HHeJ_P0062308 Prkab2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062309.1 MGP_C3HHeJ_G0027347.1 mouse_genomes_project 3 98019654 98026230 + Prkab2 protein_coding retained_intron MGP_C3HHeJ_T0062310.1 MGP_C3HHeJ_G0027347.1 mouse_genomes_project 3 98020464 98026206 + Prkab2 protein_coding retained_intron MGP_C3HHeJ_T0062311.1 MGP_C3HHeJ_G0027347.1 mouse_genomes_project 3 98023322 98024173 + Prkab2 protein_coding processed_transcript MGP_C3HHeJ_T0099291.1 MGP_C3HHeJ_G0037485.1 mouse_genomes_project 3 96748540 96748737 - Gm25890 snRNA snRNA MGP_C3HHeJ_T0062892.1 MGP_C3HHeJ_G0027486.1 mouse_genomes_project 3 109701848 109748455 - MGP_C3HHeJ_P0062892 Gpsm2 protein_coding protein_coding MGP_C3HHeJ_T0062893.1 MGP_C3HHeJ_G0027486.1 mouse_genomes_project 3 109727581 109728671 - Gpsm2 protein_coding retained_intron MGP_C3HHeJ_T0062894.1 MGP_C3HHeJ_G0027486.1 mouse_genomes_project 3 109727997 109737822 - MGP_C3HHeJ_P0062894 Gpsm2 protein_coding protein_coding MGP_C3HHeJ_T0062895.1 MGP_C3HHeJ_G0027486.1 mouse_genomes_project 3 109729133 109748262 - Gpsm2 protein_coding processed_transcript MGP_C3HHeJ_T0010462.1 MGP_C3HHeJ_G0008595.1 mouse_genomes_project 3 119845074 119845184 + Gm24155 miRNA miRNA MGP_C3HHeJ_T0001087.1 MGP_C3HHeJ_G0001021.1 mouse_genomes_project 3 18154762 18158833 + TEC TEC MGP_C3HHeJ_T0004145.1 MGP_C3HHeJ_G0003647.1 mouse_genomes_project 3 30644883 30688881 + Gm37459 antisense antisense MGP_C3HHeJ_T0099242.1 MGP_C3HHeJ_G0037436.1 mouse_genomes_project 3 33514069 33514174 + Gm25696 snRNA snRNA MGP_C3HHeJ_T0013867.1 MGP_C3HHeJ_G0011971.1 mouse_genomes_project 3 43304760 43305010 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013897.1 MGP_C3HHeJ_G0012001.1 mouse_genomes_project 3 53399279 53401092 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101937.1 MGP_C3HHeJ_G0039902.1 mouse_genomes_project 3 644590 645018 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001166.1 MGP_C3HHeJ_G0001099.1 mouse_genomes_project 3 50130112 50131938 - TEC TEC MGP_C3HHeJ_T0001167.1 MGP_C3HHeJ_G0001099.1 mouse_genomes_project 3 50130113 50131938 - TEC pseudogene MGP_C3HHeJ_T0004537.1 MGP_C3HHeJ_G0003931.1 mouse_genomes_project 4 156942006 156950123 + Gm13111 antisense antisense MGP_C3HHeJ_T0004389.1 MGP_C3HHeJ_G0003820.1 mouse_genomes_project 4 61539766 61547618 - Gm11209 antisense antisense MGP_C3HHeJ_T0065485.1 MGP_C3HHeJ_G0028021.1 mouse_genomes_project 4 56581331 56588255 - MGP_C3HHeJ_P0065485 D630039A03Rik protein_coding protein_coding MGP_C3HHeJ_T0014309.1 MGP_C3HHeJ_G0012413.1 mouse_genomes_project 4 25244942 25245265 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068760.1 MGP_C3HHeJ_G0028770.1 mouse_genomes_project 4 144829697 144870375 + MGP_C3HHeJ_P0068760 protein_coding protein_coding MGP_C3HHeJ_T0064253.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3051949 3109387 - Nsmaf protein_coding retained_intron MGP_C3HHeJ_T0064254.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3051949 3109387 - MGP_C3HHeJ_P0064254 Nsmaf protein_coding protein_coding MGP_C3HHeJ_T0064255.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3052153 3054749 - Nsmaf protein_coding retained_intron MGP_C3HHeJ_T0064256.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3052511 3109212 - Nsmaf protein_coding processed_transcript MGP_C3HHeJ_T0064257.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3062128 3109371 - Nsmaf protein_coding processed_transcript MGP_C3HHeJ_T0064258.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3064747 3079618 - Nsmaf protein_coding retained_intron MGP_C3HHeJ_T0064259.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3080199 3087345 - Nsmaf protein_coding retained_intron MGP_C3HHeJ_T0064260.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3084077 3108695 - Nsmaf protein_coding processed_transcript MGP_C3HHeJ_T0064261.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3085356 3101336 - Nsmaf protein_coding processed_transcript MGP_C3HHeJ_T0064262.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3087918 3109213 - MGP_C3HHeJ_P0064262 Nsmaf protein_coding protein_coding MGP_C3HHeJ_T0064263.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3092559 3099409 - Nsmaf protein_coding processed_transcript MGP_C3HHeJ_T0068985.1 MGP_C3HHeJ_G0028841.1 mouse_genomes_project 4 151479865 151487036 - MGP_C3HHeJ_P0068985 Rbp7 protein_coding protein_coding MGP_C3HHeJ_T0068986.1 MGP_C3HHeJ_G0028841.1 mouse_genomes_project 4 151479881 151487028 - Rbp7 protein_coding processed_transcript MGP_C3HHeJ_T0100646.1 MGP_C3HHeJ_G0038840.1 mouse_genomes_project 4 80684794 80684925 - Gm25803 snoRNA snoRNA MGP_C3HHeJ_T0065565.1 MGP_C3HHeJ_G0028043.1 mouse_genomes_project 4 60758503 60761327 - MGP_C3HHeJ_P0065565 Mup5 protein_coding protein_coding MGP_C3HHeJ_T0007946.1 MGP_C3HHeJ_G0006482.1 mouse_genomes_project 4 155385153 155386536 - Gm13173 lincRNA lincRNA MGP_C3HHeJ_T0014258.1 MGP_C3HHeJ_G0012362.1 mouse_genomes_project 4 12413206 12413661 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014307.1 MGP_C3HHeJ_G0012411.1 mouse_genomes_project 4 24406410 24406680 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017887.1 MGP_C3HHeJ_G0015345.1 mouse_genomes_project 4 156952026 156961568 - Gm13110 processed_transcript processed_transcript MGP_C3HHeJ_T0064852.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39793475 39796943 + MGP_C3HHeJ_P0064852 Galt protein_coding protein_coding MGP_C3HHeJ_T0064853.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39793475 39796943 + MGP_C3HHeJ_P0064853 Galt protein_coding protein_coding MGP_C3HHeJ_T0064854.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39793500 39795797 + Galt protein_coding processed_transcript MGP_C3HHeJ_T0064855.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39793500 39794695 + Galt protein_coding processed_transcript MGP_C3HHeJ_T0064856.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39794005 39795728 + Galt protein_coding processed_transcript MGP_C3HHeJ_T0064857.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39794087 39795520 + Galt protein_coding processed_transcript MGP_C3HHeJ_T0064858.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39794208 39795728 + Galt protein_coding processed_transcript MGP_C3HHeJ_T0064859.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39794457 39796943 + Galt protein_coding processed_transcript MGP_C3HHeJ_T0064860.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39794501 39796486 + Galt protein_coding processed_transcript MGP_C3HHeJ_T0064861.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39794509 39796026 + Galt protein_coding processed_transcript MGP_C3HHeJ_T0004502.1 MGP_C3HHeJ_G0003905.1 mouse_genomes_project 4 143153125 143156939 + Fhad1os1 antisense antisense MGP_C3HHeJ_T0004523.1 MGP_C3HHeJ_G0003919.1 mouse_genomes_project 4 151510383 151515247 + antisense antisense MGP_C3HHeJ_T0014335.1 MGP_C3HHeJ_G0012439.1 mouse_genomes_project 4 32009501 32009793 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066266.1 MGP_C3HHeJ_G0028212.1 mouse_genomes_project 4 105834693 105840473 + MGP_C3HHeJ_P0066266 Gm12728 protein_coding protein_coding MGP_C3HHeJ_T0066267.1 MGP_C3HHeJ_G0028212.1 mouse_genomes_project 4 105835357 105840473 + MGP_C3HHeJ_P0066267 Gm12728 protein_coding protein_coding MGP_C3HHeJ_T0066268.1 MGP_C3HHeJ_G0028212.1 mouse_genomes_project 4 105839028 105840756 + Gm12728 protein_coding translated_processed_pseudogene MGP_C3HHeJ_T0068590.1 MGP_C3HHeJ_G0028726.1 mouse_genomes_project 4 141850422 141882923 - MGP_C3HHeJ_P0068590 Padi4 protein_coding protein_coding MGP_C3HHeJ_T0068591.1 MGP_C3HHeJ_G0028726.1 mouse_genomes_project 4 141856757 141862582 - Padi4 protein_coding processed_transcript MGP_C3HHeJ_T0068592.1 MGP_C3HHeJ_G0028726.1 mouse_genomes_project 4 141860559 141866434 - Padi4 protein_coding processed_transcript MGP_C3HHeJ_T0068593.1 MGP_C3HHeJ_G0028726.1 mouse_genomes_project 4 141862750 141866427 - Padi4 protein_coding processed_transcript MGP_C3HHeJ_T0004364.1 MGP_C3HHeJ_G0003798.1 mouse_genomes_project 4 39494541 39496255 + Fam219aos antisense antisense MGP_C3HHeJ_T0067136.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119856289 119896756 - Ccdc30 protein_coding retained_intron MGP_C3HHeJ_T0067137.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119857233 119953807 - MGP_C3HHeJ_P0067137 Ccdc30 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067138.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119857240 119954003 - MGP_C3HHeJ_P0067138 Ccdc30 protein_coding protein_coding MGP_C3HHeJ_T0067139.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119877481 119890180 - Ccdc30 protein_coding retained_intron MGP_C3HHeJ_T0067140.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119889321 119920543 - MGP_C3HHeJ_P0067140 Ccdc30 protein_coding protein_coding MGP_C3HHeJ_T0067141.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119889322 119896549 - Ccdc30 protein_coding processed_transcript MGP_C3HHeJ_T0067142.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119890269 119930372 - MGP_C3HHeJ_P0067142 Ccdc30 protein_coding protein_coding MGP_C3HHeJ_T0067143.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119896660 119913052 - Ccdc30 protein_coding processed_transcript MGP_C3HHeJ_T0067144.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119903474 119920617 - Ccdc30 protein_coding processed_transcript MGP_C3HHeJ_T0067145.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119903476 119915018 - Ccdc30 protein_coding retained_intron MGP_C3HHeJ_T0067146.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119903484 119920543 - MGP_C3HHeJ_P0067146 Ccdc30 protein_coding protein_coding MGP_C3HHeJ_T0067147.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119909290 119920529 - Ccdc30 protein_coding retained_intron MGP_C3HHeJ_T0067148.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119929562 119938589 - Ccdc30 protein_coding processed_transcript MGP_C3HHeJ_T0066664.1 MGP_C3HHeJ_G0028284.1 mouse_genomes_project 4 114663082 114874954 + MGP_C3HHeJ_P0066664 Trabd2b protein_coding protein_coding MGP_C3HHeJ_T0007951.1 MGP_C3HHeJ_G0006487.1 mouse_genomes_project 4 158105357 158111566 + Gm26840 lincRNA lincRNA MGP_C3HHeJ_T0067655.1 MGP_C3HHeJ_G0028521.1 mouse_genomes_project 4 129740354 129741121 + MGP_C3HHeJ_P0067655 Fam229a protein_coding protein_coding MGP_C3HHeJ_T0067656.1 MGP_C3HHeJ_G0028521.1 mouse_genomes_project 4 129740404 129741121 + Fam229a protein_coding retained_intron MGP_C3HHeJ_T0010506.1 MGP_C3HHeJ_G0008639.1 mouse_genomes_project 4 43120169 43120287 + Gm22639 miRNA miRNA MGP_C3HHeJ_T0007711.1 MGP_C3HHeJ_G0006298.1 mouse_genomes_project 4 4241019 4254141 + 8430436N08Rik lincRNA lincRNA MGP_C3HHeJ_T0014262.1 MGP_C3HHeJ_G0012366.1 mouse_genomes_project 4 12903617 12904939 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007723.1 MGP_C3HHeJ_G0006306.1 mouse_genomes_project 4 10781794 10863334 - Gm11823 lincRNA lincRNA MGP_C3HHeJ_T0004427.1 MGP_C3HHeJ_G0003845.1 mouse_genomes_project 4 107946983 107949932 - Lrp8os1 antisense antisense MGP_C3HHeJ_T0004428.1 MGP_C3HHeJ_G0003845.1 mouse_genomes_project 4 107947004 107949932 - Lrp8os1 antisense antisense MGP_C3HHeJ_T0014547.1 MGP_C3HHeJ_G0012651.1 mouse_genomes_project 4 115745766 115746091 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065309.1 MGP_C3HHeJ_G0027970.1 mouse_genomes_project 4 46430588 46473358 + MGP_C3HHeJ_P0065309 Nr4a3 protein_coding protein_coding MGP_C3HHeJ_T0065310.1 MGP_C3HHeJ_G0027970.1 mouse_genomes_project 4 46430666 46435601 + Nr4a3 protein_coding processed_transcript MGP_C3HHeJ_T0065311.1 MGP_C3HHeJ_G0027970.1 mouse_genomes_project 4 46434549 46473360 + MGP_C3HHeJ_P0065311 Nr4a3 protein_coding protein_coding MGP_C3HHeJ_T0065312.1 MGP_C3HHeJ_G0027970.1 mouse_genomes_project 4 46436683 46442175 + Nr4a3 protein_coding processed_transcript MGP_C3HHeJ_T0014397.1 MGP_C3HHeJ_G0012501.1 mouse_genomes_project 4 53961509 53961894 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065746.1 MGP_C3HHeJ_G0028090.1 mouse_genomes_project 4 79331139 79333838 + MGP_C3HHeJ_P0065746 protein_coding protein_coding MGP_C3HHeJ_T0014534.1 MGP_C3HHeJ_G0012638.1 mouse_genomes_project 4 108895243 108895799 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098133.1 MGP_C3HHeJ_G0036345.1 mouse_genomes_project 4 81259730 81259841 + n-R5s187 rRNA rRNA MGP_C3HHeJ_T0014530.1 MGP_C3HHeJ_G0012634.1 mouse_genomes_project 4 108449967 108450763 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066770.1 MGP_C3HHeJ_G0028314.1 mouse_genomes_project 4 116478477 116484272 - Rad54l protein_coding processed_transcript MGP_C3HHeJ_T0066771.1 MGP_C3HHeJ_G0028314.1 mouse_genomes_project 4 116481129 116508242 - MGP_C3HHeJ_P0066771 Rad54l protein_coding protein_coding MGP_C3HHeJ_T0066772.1 MGP_C3HHeJ_G0028314.1 mouse_genomes_project 4 116481188 116508216 - MGP_C3HHeJ_P0066772 Rad54l protein_coding protein_coding MGP_C3HHeJ_T0066773.1 MGP_C3HHeJ_G0028314.1 mouse_genomes_project 4 116493983 116507539 - Rad54l protein_coding processed_transcript MGP_C3HHeJ_T0066774.1 MGP_C3HHeJ_G0028314.1 mouse_genomes_project 4 116495277 116496771 - Rad54l protein_coding processed_transcript MGP_C3HHeJ_T0066775.1 MGP_C3HHeJ_G0028314.1 mouse_genomes_project 4 116501635 116508247 - Rad54l protein_coding processed_transcript MGP_C3HHeJ_T0007850.1 MGP_C3HHeJ_G0006412.1 mouse_genomes_project 4 119504016 119518017 - Gm12865 lincRNA lincRNA MGP_C3HHeJ_T0068698.1 MGP_C3HHeJ_G0028750.1 mouse_genomes_project 4 142780047 142784912 - MGP_C3HHeJ_P0068698 Slc25a34 protein_coding protein_coding MGP_C3HHeJ_T0099360.1 MGP_C3HHeJ_G0037554.1 mouse_genomes_project 4 85533704 85533805 - Gm25811 snRNA snRNA MGP_C3HHeJ_T0068254.1 MGP_C3HHeJ_G0028645.1 mouse_genomes_project 4 136429144 136454397 + MGP_C3HHeJ_P0068254 Il22ra1 protein_coding protein_coding MGP_C3HHeJ_T0065284.1 MGP_C3HHeJ_G0027964.1 mouse_genomes_project 4 45361620 45404373 - MGP_C3HHeJ_P0065284 Anks6 protein_coding protein_coding MGP_C3HHeJ_T0065285.1 MGP_C3HHeJ_G0027964.1 mouse_genomes_project 4 45361640 45404373 - MGP_C3HHeJ_P0065285 Anks6 protein_coding protein_coding MGP_C3HHeJ_T0065286.1 MGP_C3HHeJ_G0027964.1 mouse_genomes_project 4 45362969 45371704 - Anks6 protein_coding processed_transcript MGP_C3HHeJ_T0065287.1 MGP_C3HHeJ_G0027964.1 mouse_genomes_project 4 45385478 45387163 - Anks6 protein_coding processed_transcript MGP_C3HHeJ_T0068016.1 MGP_C3HHeJ_G0028591.1 mouse_genomes_project 4 134008412 134017385 - MGP_C3HHeJ_P0068016 Trnp1 protein_coding protein_coding MGP_C3HHeJ_T0068017.1 MGP_C3HHeJ_G0028591.1 mouse_genomes_project 4 134008430 134016554 - Trnp1 protein_coding processed_transcript MGP_C3HHeJ_T0069107.1 MGP_C3HHeJ_G0028865.1 mouse_genomes_project 4 153237299 153239173 + MGP_C3HHeJ_P0069107 Gm13090 protein_coding protein_coding MGP_C3HHeJ_T0099368.1 MGP_C3HHeJ_G0037562.1 mouse_genomes_project 4 99818801 99818883 + Gm26425 snRNA snRNA MGP_C3HHeJ_T0007937.1 MGP_C3HHeJ_G0006473.1 mouse_genomes_project 4 150310473 150314881 - Gm13200 lincRNA lincRNA MGP_C3HHeJ_T0011471.1 MGP_C3HHeJ_G0009604.1 mouse_genomes_project 4 52277936 52278235 - Gm25445 misc_RNA misc_RNA MGP_C3HHeJ_T0014578.1 MGP_C3HHeJ_G0012682.1 mouse_genomes_project 4 121971051 121971292 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068473.1 MGP_C3HHeJ_G0028696.1 mouse_genomes_project 4 139508985 139585160 - MGP_C3HHeJ_P0068473 Vwa5b1 protein_coding protein_coding MGP_C3HHeJ_T0068474.1 MGP_C3HHeJ_G0028696.1 mouse_genomes_project 4 139510971 139522605 - MGP_C3HHeJ_P0068474 Vwa5b1 protein_coding protein_coding MGP_C3HHeJ_T0068475.1 MGP_C3HHeJ_G0028696.1 mouse_genomes_project 4 139523151 139585311 - MGP_C3HHeJ_P0068475 Vwa5b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068476.1 MGP_C3HHeJ_G0028696.1 mouse_genomes_project 4 139542130 139555446 - Vwa5b1 protein_coding processed_transcript MGP_C3HHeJ_T0068477.1 MGP_C3HHeJ_G0028696.1 mouse_genomes_project 4 139549070 139555913 - Vwa5b1 protein_coding processed_transcript MGP_C3HHeJ_T0064917.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41196688 41200704 - MGP_C3HHeJ_P0064917 Stoml2 protein_coding protein_coding MGP_C3HHeJ_T0064918.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41197024 41198832 - Stoml2 protein_coding processed_transcript MGP_C3HHeJ_T0064919.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41197040 41198909 - Stoml2 protein_coding processed_transcript MGP_C3HHeJ_T0064920.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41197227 41200450 - MGP_C3HHeJ_P0064920 Stoml2 protein_coding protein_coding MGP_C3HHeJ_T0064921.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41197239 41199588 - MGP_C3HHeJ_P0064921 Stoml2 protein_coding protein_coding MGP_C3HHeJ_T0064922.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41198558 41200444 - Stoml2 protein_coding processed_transcript MGP_C3HHeJ_T0064923.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41198591 41200364 - MGP_C3HHeJ_P0064923 Stoml2 protein_coding protein_coding MGP_C3HHeJ_T0064924.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41198609 41199494 - Stoml2 protein_coding processed_transcript MGP_C3HHeJ_T0064925.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41198767 41199595 - Stoml2 protein_coding processed_transcript MGP_C3HHeJ_T0064926.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41199035 41200352 - Stoml2 protein_coding processed_transcript MGP_C3HHeJ_T0064927.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41199487 41200430 - Stoml2 protein_coding processed_transcript MGP_C3HHeJ_T0004344.1 MGP_C3HHeJ_G0003783.1 mouse_genomes_project 4 6011555 6014944 - Gm11816 antisense antisense MGP_C3HHeJ_T0004345.1 MGP_C3HHeJ_G0003783.1 mouse_genomes_project 4 6013410 6014886 - Gm11816 antisense antisense MGP_C3HHeJ_T0064862.1 MGP_C3HHeJ_G0027882.1 mouse_genomes_project 4 40186438 40187104 + MGP_C3HHeJ_P0064862 protein_coding protein_coding MGP_C3HHeJ_T0010544.1 MGP_C3HHeJ_G0008677.1 mouse_genomes_project 4 132850599 132850695 + Gm25707 miRNA miRNA MGP_C3HHeJ_T0068094.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134674325 134701733 + MGP_C3HHeJ_P0068094 Ubxn11 protein_coding protein_coding MGP_C3HHeJ_T0068095.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134674330 134700141 + Ubxn11 protein_coding processed_transcript MGP_C3HHeJ_T0068096.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134674363 134700750 + Ubxn11 protein_coding processed_transcript MGP_C3HHeJ_T0068097.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134674375 134701751 + Ubxn11 protein_coding processed_transcript MGP_C3HHeJ_T0068098.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134674378 134690487 + MGP_C3HHeJ_P0068098 Ubxn11 protein_coding protein_coding MGP_C3HHeJ_T0068099.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134674379 134683980 + Ubxn11 protein_coding processed_transcript MGP_C3HHeJ_T0068100.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134682134 134687299 + Ubxn11 protein_coding processed_transcript MGP_C3HHeJ_T0068101.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134686879 134698574 + Ubxn11 protein_coding processed_transcript MGP_C3HHeJ_T0068102.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134698444 134701750 + Ubxn11 protein_coding processed_transcript MGP_C3HHeJ_T0068103.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134699026 134701476 + MGP_C3HHeJ_P0068103 Ubxn11 protein_coding protein_coding MGP_C3HHeJ_T0068104.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134700902 134701751 + Ubxn11 protein_coding processed_transcript MGP_C3HHeJ_T0065433.1 MGP_C3HHeJ_G0028010.1 mouse_genomes_project 4 55365537 55367050 + MGP_C3HHeJ_P0065433 Actl7a protein_coding protein_coding MGP_C3HHeJ_T0065480.1 MGP_C3HHeJ_G0028020.1 mouse_genomes_project 4 56384950 56533859 + protein_coding processed_transcript MGP_C3HHeJ_T0065481.1 MGP_C3HHeJ_G0028020.1 mouse_genomes_project 4 56421273 56569846 + MGP_C3HHeJ_P0065481 protein_coding protein_coding MGP_C3HHeJ_T0065482.1 MGP_C3HHeJ_G0028020.1 mouse_genomes_project 4 56458095 56532139 + MGP_C3HHeJ_P0065482 protein_coding protein_coding MGP_C3HHeJ_T0065483.1 MGP_C3HHeJ_G0028020.1 mouse_genomes_project 4 56506299 56531986 + MGP_C3HHeJ_P0065483 protein_coding protein_coding MGP_C3HHeJ_T0067789.1 MGP_C3HHeJ_G0028543.1 mouse_genomes_project 4 130561036 130584508 - MGP_C3HHeJ_P0067789 Serinc2 protein_coding protein_coding MGP_C3HHeJ_T0067790.1 MGP_C3HHeJ_G0028543.1 mouse_genomes_project 4 130561036 130584140 - MGP_C3HHeJ_P0067790 Serinc2 protein_coding protein_coding MGP_C3HHeJ_T0067791.1 MGP_C3HHeJ_G0028543.1 mouse_genomes_project 4 130561440 130589003 - MGP_C3HHeJ_P0067791 Serinc2 protein_coding protein_coding MGP_C3HHeJ_T0067792.1 MGP_C3HHeJ_G0028543.1 mouse_genomes_project 4 130571964 130584454 - MGP_C3HHeJ_P0067792 Serinc2 protein_coding protein_coding MGP_C3HHeJ_T0067793.1 MGP_C3HHeJ_G0028543.1 mouse_genomes_project 4 130572579 130584467 - MGP_C3HHeJ_P0067793 Serinc2 protein_coding protein_coding MGP_C3HHeJ_T0065866.1 MGP_C3HHeJ_G0028108.1 mouse_genomes_project 4 86082177 86115532 - MGP_C3HHeJ_P0065866 Haus6 protein_coding protein_coding MGP_C3HHeJ_T0065867.1 MGP_C3HHeJ_G0028108.1 mouse_genomes_project 4 86088493 86115532 - Haus6 protein_coding processed_transcript MGP_C3HHeJ_T0065868.1 MGP_C3HHeJ_G0028108.1 mouse_genomes_project 4 86106376 86115496 - Haus6 protein_coding processed_transcript MGP_C3HHeJ_T0065869.1 MGP_C3HHeJ_G0028108.1 mouse_genomes_project 4 86109136 86115526 - MGP_C3HHeJ_P0065869 Haus6 protein_coding protein_coding MGP_C3HHeJ_T0100615.1 MGP_C3HHeJ_G0038809.1 mouse_genomes_project 4 38373197 38373292 - Gm23338 snoRNA snoRNA MGP_C3HHeJ_T0065965.1 MGP_C3HHeJ_G0028141.1 mouse_genomes_project 4 93089576 93090953 - MGP_C3HHeJ_P0065965 Tusc1 protein_coding protein_coding MGP_C3HHeJ_T0014512.1 MGP_C3HHeJ_G0012616.1 mouse_genomes_project 4 101797779 101798480 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067744.1 MGP_C3HHeJ_G0028536.1 mouse_genomes_project 4 130239700 130245564 + MGP_C3HHeJ_P0067744 Spocd1 protein_coding protein_coding MGP_C3HHeJ_T0067745.1 MGP_C3HHeJ_G0028536.1 mouse_genomes_project 4 130239874 130249098 + MGP_C3HHeJ_P0067745 Spocd1 protein_coding protein_coding MGP_C3HHeJ_T0014453.1 MGP_C3HHeJ_G0012557.1 mouse_genomes_project 4 79326826 79327327 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014336.1 MGP_C3HHeJ_G0012440.1 mouse_genomes_project 4 32406254 32406922 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065030.1 MGP_C3HHeJ_G0027910.1 mouse_genomes_project 4 41714205 41740282 - MGP_C3HHeJ_P0065030 Tln1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0065031.1 MGP_C3HHeJ_G0027910.1 mouse_genomes_project 4 41714216 41745960 - MGP_C3HHeJ_P0065031 Tln1 protein_coding protein_coding MGP_C3HHeJ_T0065032.1 MGP_C3HHeJ_G0027910.1 mouse_genomes_project 4 41728929 41731167 - MGP_C3HHeJ_P0065032 Tln1 protein_coding protein_coding MGP_C3HHeJ_T0065033.1 MGP_C3HHeJ_G0027910.1 mouse_genomes_project 4 41730341 41734791 - MGP_C3HHeJ_P0065033 Tln1 protein_coding protein_coding MGP_C3HHeJ_T0065034.1 MGP_C3HHeJ_G0027910.1 mouse_genomes_project 4 41736983 41737983 - Tln1 protein_coding processed_transcript MGP_C3HHeJ_T0065035.1 MGP_C3HHeJ_G0027910.1 mouse_genomes_project 4 41738045 41745695 - Tln1 protein_coding processed_transcript MGP_C3HHeJ_T0065036.1 MGP_C3HHeJ_G0027910.1 mouse_genomes_project 4 41738637 41741989 - MGP_C3HHeJ_P0065036 Tln1 protein_coding protein_coding MGP_C3HHeJ_T0065037.1 MGP_C3HHeJ_G0027910.1 mouse_genomes_project 4 41739095 41739478 - Tln1 protein_coding processed_transcript MGP_C3HHeJ_T0065038.1 MGP_C3HHeJ_G0027910.1 mouse_genomes_project 4 41742871 41746228 - Tln1 protein_coding processed_transcript MGP_C3HHeJ_T0014300.1 MGP_C3HHeJ_G0012404.1 mouse_genomes_project 4 22687164 22687655 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066561.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109484631 109585678 + MGP_C3HHeJ_P0066561 Eps15 protein_coding protein_coding MGP_C3HHeJ_T0066562.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109484666 109583548 + MGP_C3HHeJ_P0066562 Eps15 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066563.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109484739 109517277 + MGP_C3HHeJ_P0066563 Eps15 protein_coding protein_coding MGP_C3HHeJ_T0066564.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109484775 109583333 + MGP_C3HHeJ_P0066564 Eps15 protein_coding protein_coding MGP_C3HHeJ_T0066565.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109484775 109583333 + MGP_C3HHeJ_P0066565 Eps15 protein_coding protein_coding MGP_C3HHeJ_T0066566.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109508819 109510282 + Eps15 protein_coding retained_intron MGP_C3HHeJ_T0066567.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109513521 109517580 + Eps15 protein_coding retained_intron MGP_C3HHeJ_T0066568.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109547339 109584427 + MGP_C3HHeJ_P0066568 Eps15 protein_coding protein_coding MGP_C3HHeJ_T0066569.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109547533 109564782 + Eps15 protein_coding retained_intron MGP_C3HHeJ_T0066570.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109568413 109583644 + MGP_C3HHeJ_P0066570 Eps15 protein_coding protein_coding MGP_C3HHeJ_T0066571.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109568457 109580736 + Eps15 protein_coding processed_transcript MGP_C3HHeJ_T0067394.1 MGP_C3HHeJ_G0028464.1 mouse_genomes_project 4 126097354 126105954 + MGP_C3HHeJ_P0067394 Mrps15 protein_coding protein_coding MGP_C3HHeJ_T0067395.1 MGP_C3HHeJ_G0028464.1 mouse_genomes_project 4 126097406 126102395 + Mrps15 protein_coding processed_transcript MGP_C3HHeJ_T0067396.1 MGP_C3HHeJ_G0028464.1 mouse_genomes_project 4 126097663 126100913 + Mrps15 protein_coding processed_transcript MGP_C3HHeJ_T0014552.1 MGP_C3HHeJ_G0012656.1 mouse_genomes_project 4 116845963 116846380 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065260.1 MGP_C3HHeJ_G0027957.1 mouse_genomes_project 4 44729689 44748924 - MGP_C3HHeJ_P0065260 Hemgn protein_coding protein_coding MGP_C3HHeJ_T0065261.1 MGP_C3HHeJ_G0027957.1 mouse_genomes_project 4 44729689 44739918 - MGP_C3HHeJ_P0065261 Hemgn protein_coding protein_coding MGP_C3HHeJ_T0066587.1 MGP_C3HHeJ_G0028270.1 mouse_genomes_project 4 109889596 110187427 + MGP_C3HHeJ_P0066587 Faf1 protein_coding protein_coding MGP_C3HHeJ_T0066588.1 MGP_C3HHeJ_G0028270.1 mouse_genomes_project 4 109890005 109896355 + Faf1 protein_coding processed_transcript MGP_C3HHeJ_T0066589.1 MGP_C3HHeJ_G0028270.1 mouse_genomes_project 4 110061315 110145992 + Faf1 protein_coding processed_transcript MGP_C3HHeJ_T0004483.1 MGP_C3HHeJ_G0003890.1 mouse_genomes_project 4 138272540 138299806 - antisense antisense MGP_C3HHeJ_T0069041.1 MGP_C3HHeJ_G0028853.1 mouse_genomes_project 4 152215872 152238307 + MGP_C3HHeJ_P0069041 Slc2a7 protein_coding protein_coding MGP_C3HHeJ_T0069042.1 MGP_C3HHeJ_G0028853.1 mouse_genomes_project 4 152225431 152226304 + Slc2a7 protein_coding retained_intron MGP_C3HHeJ_T0004471.1 MGP_C3HHeJ_G0003879.1 mouse_genomes_project 4 131141555 131142216 - Gm12970 antisense antisense MGP_C3HHeJ_T0065580.1 MGP_C3HHeJ_G0028049.1 mouse_genomes_project 4 61290282 61313820 - MGP_C3HHeJ_P0065580 Cdc26 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065582.1 MGP_C3HHeJ_G0028049.1 mouse_genomes_project 4 61302534 61313820 - MGP_C3HHeJ_P0065582 Cdc26 protein_coding protein_coding MGP_C3HHeJ_T0065583.1 MGP_C3HHeJ_G0028049.1 mouse_genomes_project 4 61308784 61313094 - Cdc26 protein_coding retained_intron MGP_C3HHeJ_T0065100.1 MGP_C3HHeJ_G0027928.1 mouse_genomes_project 4 42164302 42188234 + MGP_C3HHeJ_P0065100 Glipr2 protein_coding protein_coding MGP_C3HHeJ_T0065101.1 MGP_C3HHeJ_G0027928.1 mouse_genomes_project 4 42164593 42188234 + MGP_C3HHeJ_P0065101 Glipr2 protein_coding protein_coding MGP_C3HHeJ_T0066039.1 MGP_C3HHeJ_G0028162.1 mouse_genomes_project 4 96981858 96982185 - MGP_C3HHeJ_P0066039 Gm10192 protein_coding protein_coding MGP_C3HHeJ_T0066280.1 MGP_C3HHeJ_G0028218.1 mouse_genomes_project 4 106694868 106712535 + MGP_C3HHeJ_P0066280 Ttc22 protein_coding protein_coding MGP_C3HHeJ_T0066281.1 MGP_C3HHeJ_G0028218.1 mouse_genomes_project 4 106708322 106709974 + Ttc22 protein_coding processed_transcript MGP_C3HHeJ_T0004413.1 MGP_C3HHeJ_G0003834.1 mouse_genomes_project 4 99004318 99006713 + Gm12705 antisense antisense MGP_C3HHeJ_T0067069.1 MGP_C3HHeJ_G0028371.1 mouse_genomes_project 4 119178923 119179871 + MGP_C3HHeJ_P0067069 Olfr62 protein_coding protein_coding MGP_C3HHeJ_T0065668.1 MGP_C3HHeJ_G0028069.1 mouse_genomes_project 4 62667437 62685463 - MGP_C3HHeJ_P0065668 Tnfsf15 protein_coding protein_coding MGP_C3HHeJ_T0064361.1 MGP_C3HHeJ_G0027754.1 mouse_genomes_project 4 8382015 8389957 + MGP_C3HHeJ_P0064361 Fsbp protein_coding protein_coding MGP_C3HHeJ_T0068949.1 MGP_C3HHeJ_G0028836.1 mouse_genomes_project 4 151141310 151143035 - MGP_C3HHeJ_P0068949 Cort protein_coding protein_coding MGP_C3HHeJ_T0064534.1 MGP_C3HHeJ_G0027803.1 mouse_genomes_project 4 22743987 22944978 - MGP_C3HHeJ_P0064534 Fut9 protein_coding protein_coding MGP_C3HHeJ_T0064535.1 MGP_C3HHeJ_G0027803.1 mouse_genomes_project 4 22753574 22945076 - MGP_C3HHeJ_P0064535 Fut9 protein_coding protein_coding MGP_C3HHeJ_T0064536.1 MGP_C3HHeJ_G0027803.1 mouse_genomes_project 4 22942534 22944687 - Fut9 protein_coding processed_transcript MGP_C3HHeJ_T0064747.1 MGP_C3HHeJ_G0027855.1 mouse_genomes_project 4 39151008 39239428 - MGP_C3HHeJ_P0064747 Ubap2 protein_coding protein_coding MGP_C3HHeJ_T0064748.1 MGP_C3HHeJ_G0027855.1 mouse_genomes_project 4 39151011 39239419 - MGP_C3HHeJ_P0064748 Ubap2 protein_coding protein_coding MGP_C3HHeJ_T0064749.1 MGP_C3HHeJ_G0027855.1 mouse_genomes_project 4 39151888 39152461 - MGP_C3HHeJ_P0064749 Ubap2 protein_coding protein_coding MGP_C3HHeJ_T0064750.1 MGP_C3HHeJ_G0027855.1 mouse_genomes_project 4 39156549 39157409 - Ubap2 protein_coding processed_transcript MGP_C3HHeJ_T0064751.1 MGP_C3HHeJ_G0027855.1 mouse_genomes_project 4 39164226 39171161 - MGP_C3HHeJ_P0064751 Ubap2 protein_coding protein_coding MGP_C3HHeJ_T0064752.1 MGP_C3HHeJ_G0027855.1 mouse_genomes_project 4 39178872 39209822 - MGP_C3HHeJ_P0064752 Ubap2 protein_coding protein_coding MGP_C3HHeJ_T0064753.1 MGP_C3HHeJ_G0027855.1 mouse_genomes_project 4 39178875 39239400 - Ubap2 protein_coding processed_transcript MGP_C3HHeJ_T0064754.1 MGP_C3HHeJ_G0027855.1 mouse_genomes_project 4 39238349 39239411 - Ubap2 protein_coding processed_transcript MGP_C3HHeJ_T0068950.1 MGP_C3HHeJ_G0028837.1 mouse_genomes_project 4 151143392 151155113 - MGP_C3HHeJ_P0068950 Apitd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068951.1 MGP_C3HHeJ_G0028837.1 mouse_genomes_project 4 151144723 151155134 - MGP_C3HHeJ_P0068951 Apitd1 protein_coding protein_coding MGP_C3HHeJ_T0068952.1 MGP_C3HHeJ_G0028837.1 mouse_genomes_project 4 151144730 151146640 - Apitd1 protein_coding retained_intron MGP_C3HHeJ_T0068953.1 MGP_C3HHeJ_G0028837.1 mouse_genomes_project 4 151144956 151155140 - MGP_C3HHeJ_P0068953 Apitd1 protein_coding protein_coding MGP_C3HHeJ_T0068954.1 MGP_C3HHeJ_G0028837.1 mouse_genomes_project 4 151144959 151155130 - MGP_C3HHeJ_P0068954 Apitd1 protein_coding protein_coding MGP_C3HHeJ_T0068955.1 MGP_C3HHeJ_G0028837.1 mouse_genomes_project 4 151147547 151155142 - MGP_C3HHeJ_P0068955 Apitd1 protein_coding protein_coding MGP_C3HHeJ_T0069449.1 MGP_C3HHeJ_G0028923.1 mouse_genomes_project 4 157988055 157991358 - Mib2 protein_coding processed_transcript MGP_C3HHeJ_T0069450.1 MGP_C3HHeJ_G0028923.1 mouse_genomes_project 4 157988060 158000472 - Mib2 protein_coding processed_transcript MGP_C3HHeJ_T0069451.1 MGP_C3HHeJ_G0028923.1 mouse_genomes_project 4 157988060 158003586 - MGP_C3HHeJ_P0069451 Mib2 protein_coding protein_coding MGP_C3HHeJ_T0069452.1 MGP_C3HHeJ_G0028923.1 mouse_genomes_project 4 157988061 157990106 - Mib2 protein_coding processed_transcript MGP_C3HHeJ_T0069453.1 MGP_C3HHeJ_G0028923.1 mouse_genomes_project 4 157989216 157990106 - Mib2 protein_coding processed_transcript MGP_C3HHeJ_T0069454.1 MGP_C3HHeJ_G0028923.1 mouse_genomes_project 4 157990321 157992962 - MGP_C3HHeJ_P0069454 Mib2 protein_coding protein_coding MGP_C3HHeJ_T0069455.1 MGP_C3HHeJ_G0028923.1 mouse_genomes_project 4 157991002 157991718 - Mib2 protein_coding processed_transcript MGP_C3HHeJ_T0069456.1 MGP_C3HHeJ_G0028923.1 mouse_genomes_project 4 157994698 158003585 - Mib2 protein_coding processed_transcript MGP_C3HHeJ_T0069457.1 MGP_C3HHeJ_G0028923.1 mouse_genomes_project 4 158000409 158003581 - Mib2 protein_coding processed_transcript MGP_C3HHeJ_T0014520.1 MGP_C3HHeJ_G0012624.1 mouse_genomes_project 4 105568710 105569161 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068213.1 MGP_C3HHeJ_G0028637.1 mouse_genomes_project 4 135875671 135938852 - MGP_C3HHeJ_P0068213 Clic4 protein_coding protein_coding MGP_C3HHeJ_T0068214.1 MGP_C3HHeJ_G0028637.1 mouse_genomes_project 4 135882266 135939077 - Clic4 protein_coding retained_intron MGP_C3HHeJ_T0064211.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601175 605806 + MGP_C3HHeJ_P0064211 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064212.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601175 605801 + MGP_C3HHeJ_P0064212 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064213.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601177 605750 + MGP_C3HHeJ_P0064213 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064214.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601201 605799 + MGP_C3HHeJ_P0064214 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064215.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601201 613306 + MGP_C3HHeJ_P0064215 Chchd7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064216.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601201 605806 + MGP_C3HHeJ_P0064216 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064217.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601201 605328 + MGP_C3HHeJ_P0064217 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064218.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601201 605806 + MGP_C3HHeJ_P0064218 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064219.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601207 605782 + MGP_C3HHeJ_P0064219 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064220.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601330 605684 + MGP_C3HHeJ_P0064220 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064221.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601709 603697 + Chchd7 protein_coding retained_intron MGP_C3HHeJ_T0064222.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601787 605804 + MGP_C3HHeJ_P0064222 Chchd7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064223.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 603131 605803 + MGP_C3HHeJ_P0064223 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064224.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 605691 612471 + Chchd7 protein_coding processed_transcript MGP_C3HHeJ_T0064225.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 609079 612132 + Chchd7 protein_coding retained_intron MGP_C3HHeJ_T0102012.1 MGP_C3HHeJ_G0039977.1 mouse_genomes_project 4 119185770 119186684 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099324.1 MGP_C3HHeJ_G0037518.1 mouse_genomes_project 4 5932912 5933018 + Gm23423 snRNA snRNA MGP_C3HHeJ_T0004514.1 MGP_C3HHeJ_G0003913.1 mouse_genomes_project 4 150911789 150912604 - Gm15969 antisense antisense MGP_C3HHeJ_T0014463.1 MGP_C3HHeJ_G0012567.1 mouse_genomes_project 4 84125347 84126395 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068844.1 MGP_C3HHeJ_G0028813.1 mouse_genomes_project 4 149867823 149874145 + MGP_C3HHeJ_P0068844 2510039O18Rik protein_coding protein_coding MGP_C3HHeJ_T0099387.1 MGP_C3HHeJ_G0037581.1 mouse_genomes_project 4 124325880 124325984 - Gm22983 snRNA snRNA MGP_C3HHeJ_T0014484.1 MGP_C3HHeJ_G0012588.1 mouse_genomes_project 4 92118340 92118638 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068270.1 MGP_C3HHeJ_G0028650.1 mouse_genomes_project 4 136645849 136665408 + MGP_C3HHeJ_P0068270 Fuca1 protein_coding protein_coding MGP_C3HHeJ_T0068271.1 MGP_C3HHeJ_G0028650.1 mouse_genomes_project 4 136654956 136659820 + Fuca1 protein_coding processed_transcript MGP_C3HHeJ_T0068272.1 MGP_C3HHeJ_G0028650.1 mouse_genomes_project 4 136658044 136664388 + Fuca1 protein_coding processed_transcript MGP_C3HHeJ_T0068273.1 MGP_C3HHeJ_G0028650.1 mouse_genomes_project 4 136658171 136660389 + Fuca1 protein_coding processed_transcript MGP_C3HHeJ_T0068274.1 MGP_C3HHeJ_G0028650.1 mouse_genomes_project 4 136661742 136664388 + Fuca1 protein_coding processed_transcript MGP_C3HHeJ_T0099353.1 MGP_C3HHeJ_G0037547.1 mouse_genomes_project 4 61159819 61159926 + Gm23148 snRNA snRNA MGP_C3HHeJ_T0068192.1 MGP_C3HHeJ_G0028632.1 mouse_genomes_project 4 135490148 135527642 + MGP_C3HHeJ_P0068192 Rhd protein_coding protein_coding MGP_C3HHeJ_T0068193.1 MGP_C3HHeJ_G0028632.1 mouse_genomes_project 4 135508447 135521010 + Rhd protein_coding retained_intron MGP_C3HHeJ_T0064642.1 MGP_C3HHeJ_G0027828.1 mouse_genomes_project 4 32241190 32284355 - MGP_C3HHeJ_P0064642 Cfap206 protein_coding protein_coding MGP_C3HHeJ_T0064643.1 MGP_C3HHeJ_G0027828.1 mouse_genomes_project 4 32241592 32273122 - Cfap206 protein_coding processed_transcript MGP_C3HHeJ_T0064644.1 MGP_C3HHeJ_G0027828.1 mouse_genomes_project 4 32264760 32284327 - MGP_C3HHeJ_P0064644 Cfap206 protein_coding protein_coding MGP_C3HHeJ_T0064645.1 MGP_C3HHeJ_G0027828.1 mouse_genomes_project 4 32275009 32284344 - MGP_C3HHeJ_P0064645 Cfap206 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064646.1 MGP_C3HHeJ_G0027828.1 mouse_genomes_project 4 32275040 32284344 - MGP_C3HHeJ_P0064646 Cfap206 protein_coding protein_coding MGP_C3HHeJ_T0064647.1 MGP_C3HHeJ_G0027828.1 mouse_genomes_project 4 32277156 32284344 - Cfap206 protein_coding processed_transcript MGP_C3HHeJ_T0010569.1 MGP_C3HHeJ_G0008702.1 mouse_genomes_project 4 155245290 155245385 - Gm25779 miRNA miRNA MGP_C3HHeJ_T0066262.1 MGP_C3HHeJ_G0028209.1 mouse_genomes_project 4 104951708 105060684 + MGP_C3HHeJ_P0066262 1700024P16Rik protein_coding protein_coding MGP_C3HHeJ_T0066263.1 MGP_C3HHeJ_G0028209.1 mouse_genomes_project 4 104951776 105060684 + MGP_C3HHeJ_P0066263 1700024P16Rik protein_coding protein_coding MGP_C3HHeJ_T0065940.1 MGP_C3HHeJ_G0028133.1 mouse_genomes_project 4 88821603 88871991 + MGP_C3HHeJ_P0065940 Mtap protein_coding protein_coding MGP_C3HHeJ_T0065941.1 MGP_C3HHeJ_G0028133.1 mouse_genomes_project 4 88867273 88870384 + Mtap protein_coding processed_transcript MGP_C3HHeJ_T0099343.1 MGP_C3HHeJ_G0037537.1 mouse_genomes_project 4 39277327 39277435 - Gm26049 snRNA snRNA MGP_C3HHeJ_T0004503.1 MGP_C3HHeJ_G0003906.1 mouse_genomes_project 4 143189666 143201558 + 4930455G09Rik antisense antisense MGP_C3HHeJ_T0100630.1 MGP_C3HHeJ_G0038824.1 mouse_genomes_project 4 55302241 55302373 - Gm26144 snoRNA snoRNA MGP_C3HHeJ_T0065607.1 MGP_C3HHeJ_G0028057.1 mouse_genomes_project 4 61431462 61457580 + MGP_C3HHeJ_P0065607 4933430I17Rik protein_coding protein_coding MGP_C3HHeJ_T0065608.1 MGP_C3HHeJ_G0028057.1 mouse_genomes_project 4 61431901 61457349 + MGP_C3HHeJ_P0065608 4933430I17Rik protein_coding unknown_likely_coding MGP_C3HHeJ_T0067627.1 MGP_C3HHeJ_G0028513.1 mouse_genomes_project 4 129437215 129445549 - MGP_C3HHeJ_P0067627 C77080 protein_coding protein_coding MGP_C3HHeJ_T0067628.1 MGP_C3HHeJ_G0028513.1 mouse_genomes_project 4 129437215 129458008 - MGP_C3HHeJ_P0067628 C77080 protein_coding protein_coding MGP_C3HHeJ_T0067629.1 MGP_C3HHeJ_G0028513.1 mouse_genomes_project 4 129439092 129467690 - MGP_C3HHeJ_P0067629 C77080 protein_coding protein_coding MGP_C3HHeJ_T0067630.1 MGP_C3HHeJ_G0028513.1 mouse_genomes_project 4 129442997 129482040 - MGP_C3HHeJ_P0067630 C77080 protein_coding protein_coding MGP_C3HHeJ_T0017849.1 MGP_C3HHeJ_G0015325.1 mouse_genomes_project 4 106302698 106350416 + Gm12724 processed_transcript processed_transcript MGP_C3HHeJ_T0068782.1 MGP_C3HHeJ_G0028786.1 mouse_genomes_project 4 145835659 145859177 + MGP_C3HHeJ_P0068782 protein_coding protein_coding MGP_C3HHeJ_T0099325.1 MGP_C3HHeJ_G0037519.1 mouse_genomes_project 4 6433584 6433747 - Gm24152 snRNA snRNA MGP_C3HHeJ_T0007950.1 MGP_C3HHeJ_G0006486.1 mouse_genomes_project 4 157146618 157148138 + lincRNA lincRNA MGP_C3HHeJ_T0068797.1 MGP_C3HHeJ_G0028800.1 mouse_genomes_project 4 146304603 146313963 - MGP_C3HHeJ_P0068797 Gm438 protein_coding protein_coding MGP_C3HHeJ_T0007835.1 MGP_C3HHeJ_G0006401.1 mouse_genomes_project 4 106918803 106924974 - Gm12746 lincRNA lincRNA MGP_C3HHeJ_T0014540.1 MGP_C3HHeJ_G0012644.1 mouse_genomes_project 4 111495857 111496856 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069097.1 MGP_C3HHeJ_G0028864.1 mouse_genomes_project 4 153194968 153205622 - MGP_C3HHeJ_P0069097 Vamp3 protein_coding protein_coding MGP_C3HHeJ_T0069098.1 MGP_C3HHeJ_G0028864.1 mouse_genomes_project 4 153198077 153205615 - Vamp3 protein_coding retained_intron MGP_C3HHeJ_T0069099.1 MGP_C3HHeJ_G0028864.1 mouse_genomes_project 4 153203581 153205632 - Vamp3 protein_coding retained_intron MGP_C3HHeJ_T0014573.1 MGP_C3HHeJ_G0012677.1 mouse_genomes_project 4 120103093 120103496 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014345.1 MGP_C3HHeJ_G0012449.1 mouse_genomes_project 4 35751777 35752206 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068280.1 MGP_C3HHeJ_G0028652.1 mouse_genomes_project 4 136691657 136696094 + MGP_C3HHeJ_P0068280 Gale protein_coding protein_coding MGP_C3HHeJ_T0068281.1 MGP_C3HHeJ_G0028652.1 mouse_genomes_project 4 136691687 136693560 + MGP_C3HHeJ_P0068281 Gale protein_coding protein_coding MGP_C3HHeJ_T0068282.1 MGP_C3HHeJ_G0028652.1 mouse_genomes_project 4 136691690 136694796 + Gale protein_coding retained_intron MGP_C3HHeJ_T0068283.1 MGP_C3HHeJ_G0028652.1 mouse_genomes_project 4 136691747 136693550 + MGP_C3HHeJ_P0068283 Gale protein_coding protein_coding MGP_C3HHeJ_T0068284.1 MGP_C3HHeJ_G0028652.1 mouse_genomes_project 4 136693095 136696094 + MGP_C3HHeJ_P0068284 Gale protein_coding protein_coding MGP_C3HHeJ_T0068285.1 MGP_C3HHeJ_G0028652.1 mouse_genomes_project 4 136693125 136694850 + Gale protein_coding retained_intron MGP_C3HHeJ_T0068286.1 MGP_C3HHeJ_G0028652.1 mouse_genomes_project 4 136693549 136695619 + Gale protein_coding retained_intron MGP_C3HHeJ_T0014554.1 MGP_C3HHeJ_G0012658.1 mouse_genomes_project 4 117291606 117292053 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014407.1 MGP_C3HHeJ_G0012511.1 mouse_genomes_project 4 58130553 58131273 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065095.1 MGP_C3HHeJ_G0027926.1 mouse_genomes_project 4 42047077 42050834 + MGP_C3HHeJ_P0065095 Olfr155 protein_coding protein_coding MGP_C3HHeJ_T0065096.1 MGP_C3HHeJ_G0027926.1 mouse_genomes_project 4 42049855 42051027 + MGP_C3HHeJ_P0065096 Olfr155 protein_coding protein_coding MGP_C3HHeJ_T0004463.1 MGP_C3HHeJ_G0003874.1 mouse_genomes_project 4 128301654 128333915 - Csmd2os antisense antisense MGP_C3HHeJ_T0004464.1 MGP_C3HHeJ_G0003874.1 mouse_genomes_project 4 128301654 128337148 - Csmd2os antisense antisense MGP_C3HHeJ_T0014431.1 MGP_C3HHeJ_G0012535.1 mouse_genomes_project 4 72155726 72161893 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017895.1 MGP_C3HHeJ_G0015349.1 mouse_genomes_project 4 158406656 158413763 - Gm13648 processed_transcript processed_transcript MGP_C3HHeJ_T0014387.1 MGP_C3HHeJ_G0012491.1 mouse_genomes_project 4 51863015 51863462 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014537.1 MGP_C3HHeJ_G0012641.1 mouse_genomes_project 4 109829917 109831061 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007717.1 MGP_C3HHeJ_G0006301.1 mouse_genomes_project 4 7885548 7889738 + Gm11827 lincRNA lincRNA MGP_C3HHeJ_T0007718.1 MGP_C3HHeJ_G0006301.1 mouse_genomes_project 4 7886697 7889738 + Gm11827 lincRNA lincRNA MGP_C3HHeJ_T0068594.1 MGP_C3HHeJ_G0028727.1 mouse_genomes_project 4 141894009 141920727 - MGP_C3HHeJ_P0068594 Padi3 protein_coding protein_coding MGP_C3HHeJ_T0068595.1 MGP_C3HHeJ_G0028727.1 mouse_genomes_project 4 141894013 141914130 - MGP_C3HHeJ_P0068595 Padi3 protein_coding protein_coding MGP_C3HHeJ_T0065187.1 MGP_C3HHeJ_G0027940.1 mouse_genomes_project 4 43459781 43541384 + MGP_C3HHeJ_P0065187 Frmpd1 protein_coding protein_coding MGP_C3HHeJ_T0065188.1 MGP_C3HHeJ_G0027940.1 mouse_genomes_project 4 43459812 43566086 + MGP_C3HHeJ_P0065188 Frmpd1 protein_coding protein_coding MGP_C3HHeJ_T0065189.1 MGP_C3HHeJ_G0027940.1 mouse_genomes_project 4 43479976 43566086 + MGP_C3HHeJ_P0065189 Frmpd1 protein_coding protein_coding MGP_C3HHeJ_T0065205.1 MGP_C3HHeJ_G0027944.1 mouse_genomes_project 4 43681343 43693219 - MGP_C3HHeJ_P0065205 Slc25a51 protein_coding protein_coding MGP_C3HHeJ_T0065206.1 MGP_C3HHeJ_G0027944.1 mouse_genomes_project 4 43681674 43693105 - MGP_C3HHeJ_P0065206 Slc25a51 protein_coding protein_coding MGP_C3HHeJ_T0065207.1 MGP_C3HHeJ_G0027944.1 mouse_genomes_project 4 43681704 43688110 - MGP_C3HHeJ_P0065207 Slc25a51 protein_coding protein_coding MGP_C3HHeJ_T0065208.1 MGP_C3HHeJ_G0027944.1 mouse_genomes_project 4 43690345 43693194 - Slc25a51 protein_coding processed_transcript MGP_C3HHeJ_T0014363.1 MGP_C3HHeJ_G0012467.1 mouse_genomes_project 4 43410283 43410642 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067149.1 MGP_C3HHeJ_G0028396.1 mouse_genomes_project 4 119956983 119961468 - Ppcs protein_coding retained_intron MGP_C3HHeJ_T0067150.1 MGP_C3HHeJ_G0028396.1 mouse_genomes_project 4 119956983 119961530 - MGP_C3HHeJ_P0067150 Ppcs protein_coding protein_coding MGP_C3HHeJ_T0067151.1 MGP_C3HHeJ_G0028396.1 mouse_genomes_project 4 119956983 119961486 - MGP_C3HHeJ_P0067151 Ppcs protein_coding protein_coding MGP_C3HHeJ_T0014389.1 MGP_C3HHeJ_G0012493.1 mouse_genomes_project 4 52352309 52352696 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068000.1 MGP_C3HHeJ_G0028587.1 mouse_genomes_project 4 133769731 133781679 - MGP_C3HHeJ_P0068000 Tmem222 protein_coding protein_coding MGP_C3HHeJ_T0068001.1 MGP_C3HHeJ_G0028587.1 mouse_genomes_project 4 133770516 133781549 - MGP_C3HHeJ_P0068001 Tmem222 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068002.1 MGP_C3HHeJ_G0028587.1 mouse_genomes_project 4 133770562 133781657 - MGP_C3HHeJ_P0068002 Tmem222 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068003.1 MGP_C3HHeJ_G0028587.1 mouse_genomes_project 4 133770573 133781505 - MGP_C3HHeJ_P0068003 Tmem222 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068004.1 MGP_C3HHeJ_G0028587.1 mouse_genomes_project 4 133770588 133773793 - Tmem222 protein_coding retained_intron MGP_C3HHeJ_T0068005.1 MGP_C3HHeJ_G0028587.1 mouse_genomes_project 4 133774568 133781638 - Tmem222 protein_coding retained_intron MGP_C3HHeJ_T0067987.1 MGP_C3HHeJ_G0028584.1 mouse_genomes_project 4 133710865 133720904 + Cd164l2 protein_coding processed_transcript MGP_C3HHeJ_T0067988.1 MGP_C3HHeJ_G0028584.1 mouse_genomes_project 4 133711639 133723674 + MGP_C3HHeJ_P0067988 Cd164l2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067989.1 MGP_C3HHeJ_G0028584.1 mouse_genomes_project 4 133719944 133723673 + MGP_C3HHeJ_P0067989 Cd164l2 protein_coding protein_coding MGP_C3HHeJ_T0067990.1 MGP_C3HHeJ_G0028584.1 mouse_genomes_project 4 133720581 133723673 + Cd164l2 protein_coding processed_transcript MGP_C3HHeJ_T0067991.1 MGP_C3HHeJ_G0028584.1 mouse_genomes_project 4 133720667 133723360 + Cd164l2 protein_coding retained_intron MGP_C3HHeJ_T0099340.1 MGP_C3HHeJ_G0037534.1 mouse_genomes_project 4 37883683 37883745 - Gm26087 snRNA snRNA MGP_C3HHeJ_T0010513.1 MGP_C3HHeJ_G0008646.1 mouse_genomes_project 4 76139884 76139961 - Gm23159 miRNA miRNA MGP_C3HHeJ_T0065502.1 MGP_C3HHeJ_G0028026.1 mouse_genomes_project 4 57100897 57228936 - MGP_C3HHeJ_P0065502 Lpar1 protein_coding protein_coding MGP_C3HHeJ_T0065503.1 MGP_C3HHeJ_G0028026.1 mouse_genomes_project 4 57100897 57229132 - MGP_C3HHeJ_P0065503 Lpar1 protein_coding protein_coding MGP_C3HHeJ_T0065504.1 MGP_C3HHeJ_G0028026.1 mouse_genomes_project 4 57100897 57228890 - MGP_C3HHeJ_P0065504 Lpar1 protein_coding protein_coding MGP_C3HHeJ_T0065505.1 MGP_C3HHeJ_G0028026.1 mouse_genomes_project 4 57100897 57229207 - MGP_C3HHeJ_P0065505 Lpar1 protein_coding protein_coding MGP_C3HHeJ_T0065506.1 MGP_C3HHeJ_G0028026.1 mouse_genomes_project 4 57100897 57172244 - MGP_C3HHeJ_P0065506 Lpar1 protein_coding protein_coding MGP_C3HHeJ_T0065507.1 MGP_C3HHeJ_G0028026.1 mouse_genomes_project 4 57158863 57223989 - MGP_C3HHeJ_P0065507 Lpar1 protein_coding protein_coding MGP_C3HHeJ_T0065508.1 MGP_C3HHeJ_G0028026.1 mouse_genomes_project 4 57158918 57229477 - MGP_C3HHeJ_P0065508 Lpar1 protein_coding protein_coding MGP_C3HHeJ_T0065509.1 MGP_C3HHeJ_G0028026.1 mouse_genomes_project 4 57158952 57228763 - MGP_C3HHeJ_P0065509 Lpar1 protein_coding protein_coding MGP_C3HHeJ_T0068029.1 MGP_C3HHeJ_G0028596.1 mouse_genomes_project 4 134119746 134128639 + MGP_C3HHeJ_P0068029 Gpn2 protein_coding protein_coding MGP_C3HHeJ_T0068030.1 MGP_C3HHeJ_G0028596.1 mouse_genomes_project 4 134119803 134128389 + MGP_C3HHeJ_P0068030 Gpn2 protein_coding protein_coding MGP_C3HHeJ_T0068031.1 MGP_C3HHeJ_G0028596.1 mouse_genomes_project 4 134119812 134123048 + Gpn2 protein_coding processed_transcript MGP_C3HHeJ_T0068568.1 MGP_C3HHeJ_G0028721.1 mouse_genomes_project 4 141010982 141020133 - MGP_C3HHeJ_P0068568 Klhdc7a protein_coding protein_coding MGP_C3HHeJ_T0067053.1 MGP_C3HHeJ_G0028366.1 mouse_genomes_project 4 118976631 118995145 - MGP_C3HHeJ_P0067053 Tie1 protein_coding protein_coding MGP_C3HHeJ_T0067054.1 MGP_C3HHeJ_G0028366.1 mouse_genomes_project 4 118976631 118995451 - MGP_C3HHeJ_P0067054 Tie1 protein_coding protein_coding MGP_C3HHeJ_T0067055.1 MGP_C3HHeJ_G0028366.1 mouse_genomes_project 4 118983469 118995183 - Tie1 protein_coding processed_transcript MGP_C3HHeJ_T0004515.1 MGP_C3HHeJ_G0003914.1 mouse_genomes_project 4 150946527 150947950 - Gm13205 antisense antisense MGP_C3HHeJ_T0065267.1 MGP_C3HHeJ_G0027960.1 mouse_genomes_project 4 44830636 44867339 - MGP_C3HHeJ_P0065267 Trim14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065268.1 MGP_C3HHeJ_G0027960.1 mouse_genomes_project 4 44831674 44865631 - Trim14 protein_coding processed_transcript MGP_C3HHeJ_T0065269.1 MGP_C3HHeJ_G0027960.1 mouse_genomes_project 4 44844243 44867358 - MGP_C3HHeJ_P0065269 Trim14 protein_coding protein_coding MGP_C3HHeJ_T0065270.1 MGP_C3HHeJ_G0027960.1 mouse_genomes_project 4 44844784 44865659 - Trim14 protein_coding processed_transcript MGP_C3HHeJ_T0065271.1 MGP_C3HHeJ_G0027960.1 mouse_genomes_project 4 44847041 44867331 - MGP_C3HHeJ_P0065271 Trim14 protein_coding protein_coding MGP_C3HHeJ_T0065272.1 MGP_C3HHeJ_G0027960.1 mouse_genomes_project 4 44854409 44865821 - Trim14 protein_coding processed_transcript MGP_C3HHeJ_T0068414.1 MGP_C3HHeJ_G0028684.1 mouse_genomes_project 4 138627576 138689450 - MGP_C3HHeJ_P0068414 Alpl protein_coding protein_coding MGP_C3HHeJ_T0068415.1 MGP_C3HHeJ_G0028684.1 mouse_genomes_project 4 138632290 138633018 - Alpl protein_coding processed_transcript MGP_C3HHeJ_T0068416.1 MGP_C3HHeJ_G0028684.1 mouse_genomes_project 4 138638406 138655830 - MGP_C3HHeJ_P0068416 Alpl protein_coding protein_coding MGP_C3HHeJ_T0068417.1 MGP_C3HHeJ_G0028684.1 mouse_genomes_project 4 138642892 138675290 - MGP_C3HHeJ_P0068417 Alpl protein_coding protein_coding MGP_C3HHeJ_T0068418.1 MGP_C3HHeJ_G0028684.1 mouse_genomes_project 4 138644105 138678466 - MGP_C3HHeJ_P0068418 Alpl protein_coding protein_coding MGP_C3HHeJ_T0068419.1 MGP_C3HHeJ_G0028684.1 mouse_genomes_project 4 138644649 138689296 - Alpl protein_coding processed_transcript MGP_C3HHeJ_T0068420.1 MGP_C3HHeJ_G0028684.1 mouse_genomes_project 4 138647686 138659264 - Alpl protein_coding processed_transcript MGP_C3HHeJ_T0068421.1 MGP_C3HHeJ_G0028684.1 mouse_genomes_project 4 138647686 138659059 - Alpl protein_coding processed_transcript MGP_C3HHeJ_T0014587.1 MGP_C3HHeJ_G0012691.1 mouse_genomes_project 4 123576128 123576537 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010534.1 MGP_C3HHeJ_G0008667.1 mouse_genomes_project 4 123562371 123562473 + Mir6398 miRNA miRNA MGP_C3HHeJ_T0068153.1 MGP_C3HHeJ_G0028622.1 mouse_genomes_project 4 134947240 134968358 - MGP_C3HHeJ_P0068153 Extl1 protein_coding protein_coding MGP_C3HHeJ_T0068154.1 MGP_C3HHeJ_G0028622.1 mouse_genomes_project 4 134956356 134980531 - Extl1 protein_coding processed_transcript MGP_C3HHeJ_T0068155.1 MGP_C3HHeJ_G0028622.1 mouse_genomes_project 4 134958492 134961204 - Extl1 protein_coding processed_transcript MGP_C3HHeJ_T0007821.1 MGP_C3HHeJ_G0006391.1 mouse_genomes_project 4 101211095 101239766 - Gm12796 lincRNA lincRNA MGP_C3HHeJ_T0007757.1 MGP_C3HHeJ_G0006338.1 mouse_genomes_project 4 47328618 47395992 + lincRNA lincRNA MGP_C3HHeJ_T0069289.1 MGP_C3HHeJ_G0028896.1 mouse_genomes_project 4 156454843 156564369 + MGP_C3HHeJ_P0069289 Megf6 protein_coding protein_coding MGP_C3HHeJ_T0069290.1 MGP_C3HHeJ_G0028896.1 mouse_genomes_project 4 156525160 156560395 + MGP_C3HHeJ_P0069290 Megf6 protein_coding protein_coding MGP_C3HHeJ_T0069291.1 MGP_C3HHeJ_G0028896.1 mouse_genomes_project 4 156537046 156539969 + Megf6 protein_coding retained_intron MGP_C3HHeJ_T0069292.1 MGP_C3HHeJ_G0028896.1 mouse_genomes_project 4 156553273 156563840 + Megf6 protein_coding processed_transcript MGP_C3HHeJ_T0069293.1 MGP_C3HHeJ_G0028896.1 mouse_genomes_project 4 156554829 156559189 + MGP_C3HHeJ_P0069293 Megf6 protein_coding protein_coding MGP_C3HHeJ_T0069294.1 MGP_C3HHeJ_G0028896.1 mouse_genomes_project 4 156558444 156562784 + Megf6 protein_coding retained_intron MGP_C3HHeJ_T0069295.1 MGP_C3HHeJ_G0028896.1 mouse_genomes_project 4 156558539 156559695 + Megf6 protein_coding retained_intron MGP_C3HHeJ_T0010554.1 MGP_C3HHeJ_G0008687.1 mouse_genomes_project 4 137993454 137993524 + Gm25399 miRNA miRNA MGP_C3HHeJ_T0017843.1 MGP_C3HHeJ_G0015320.1 mouse_genomes_project 4 95226424 95249395 - Gm830 processed_transcript processed_transcript MGP_C3HHeJ_T0014298.1 MGP_C3HHeJ_G0012402.1 mouse_genomes_project 4 22550293 22550620 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011721.1 MGP_C3HHeJ_G0009842.1 mouse_genomes_project 4 118865958 118868727 + MGP_C3HHeJ_P0011721 Hyi polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0011722.1 MGP_C3HHeJ_G0009842.1 mouse_genomes_project 4 118865967 118867287 + Hyi polymorphic_pseudogene retained_intron MGP_C3HHeJ_T0011723.1 MGP_C3HHeJ_G0009842.1 mouse_genomes_project 4 118865967 118868727 + MGP_C3HHeJ_P0011723 Hyi polymorphic_pseudogene nonsense_mediated_decay MGP_C3HHeJ_T0011724.1 MGP_C3HHeJ_G0009842.1 mouse_genomes_project 4 118865982 118868727 + MGP_C3HHeJ_P0011724 Hyi polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0011725.1 MGP_C3HHeJ_G0009842.1 mouse_genomes_project 4 118867304 118868478 + Hyi polymorphic_pseudogene retained_intron MGP_C3HHeJ_T0067028.1 MGP_C3HHeJ_G0009842.1 mouse_genomes_project 4 118866001 118868734 + MGP_C3HHeJ_P0067028 Hyi polymorphic_pseudogene unknown_likely_coding MGP_C3HHeJ_T0102025.1 MGP_C3HHeJ_G0039990.1 mouse_genomes_project 4 145309689 145321178 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0068773.1 MGP_C3HHeJ_G0028781.1 mouse_genomes_project 4 145606950 145613255 - MGP_C3HHeJ_P0068773 Oog1 protein_coding protein_coding MGP_C3HHeJ_T0007713.1 MGP_C3HHeJ_G0006300.1 mouse_genomes_project 4 7219312 7466508 - lincRNA lincRNA MGP_C3HHeJ_T0007714.1 MGP_C3HHeJ_G0006300.1 mouse_genomes_project 4 7238673 7531572 - lincRNA lincRNA MGP_C3HHeJ_T0007715.1 MGP_C3HHeJ_G0006300.1 mouse_genomes_project 4 7469333 7531556 - lincRNA lincRNA MGP_C3HHeJ_T0007716.1 MGP_C3HHeJ_G0006300.1 mouse_genomes_project 4 7469609 7531559 - lincRNA lincRNA MGP_C3HHeJ_T0001395.1 MGP_C3HHeJ_G0001325.1 mouse_genomes_project 4 152132611 152135023 + TEC TEC MGP_C3HHeJ_T0014283.1 MGP_C3HHeJ_G0012387.1 mouse_genomes_project 4 18673272 18674071 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014355.1 MGP_C3HHeJ_G0012459.1 mouse_genomes_project 4 38591734 38592181 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004416.1 MGP_C3HHeJ_G0003837.1 mouse_genomes_project 4 102975212 102997509 - Gm12709 antisense antisense MGP_C3HHeJ_T0100616.1 MGP_C3HHeJ_G0038810.1 mouse_genomes_project 4 39160388 39160465 - Gm22888 snoRNA snoRNA MGP_C3HHeJ_T0066244.1 MGP_C3HHeJ_G0028204.1 mouse_genomes_project 4 103317185 103369191 + MGP_C3HHeJ_P0066244 Oma1 protein_coding protein_coding MGP_C3HHeJ_T0066245.1 MGP_C3HHeJ_G0028204.1 mouse_genomes_project 4 103327728 103333114 + Oma1 protein_coding processed_transcript MGP_C3HHeJ_T0066246.1 MGP_C3HHeJ_G0028204.1 mouse_genomes_project 4 103333132 103374615 + Oma1 protein_coding processed_transcript MGP_C3HHeJ_T0017861.1 MGP_C3HHeJ_G0015333.1 mouse_genomes_project 4 119752729 119754368 + Gm12898 processed_transcript processed_transcript MGP_C3HHeJ_T0066295.1 MGP_C3HHeJ_G0028221.1 mouse_genomes_project 4 106752690 106799378 - MGP_C3HHeJ_P0066295 Mroh7 protein_coding protein_coding MGP_C3HHeJ_T0066296.1 MGP_C3HHeJ_G0028221.1 mouse_genomes_project 4 106752697 106780589 - Mroh7 protein_coding processed_transcript MGP_C3HHeJ_T0066297.1 MGP_C3HHeJ_G0028221.1 mouse_genomes_project 4 106752697 106779105 - Mroh7 protein_coding retained_intron MGP_C3HHeJ_T0066298.1 MGP_C3HHeJ_G0028221.1 mouse_genomes_project 4 106752910 106780272 - Mroh7 protein_coding processed_transcript MGP_C3HHeJ_T0066299.1 MGP_C3HHeJ_G0028221.1 mouse_genomes_project 4 106763101 106770548 - Mroh7 protein_coding processed_transcript MGP_C3HHeJ_T0066300.1 MGP_C3HHeJ_G0028221.1 mouse_genomes_project 4 106779046 106799424 - MGP_C3HHeJ_P0066300 Mroh7 protein_coding protein_coding MGP_C3HHeJ_T0066301.1 MGP_C3HHeJ_G0028221.1 mouse_genomes_project 4 106792781 106802366 - MGP_C3HHeJ_P0066301 Mroh7 protein_coding protein_coding MGP_C3HHeJ_T0014376.1 MGP_C3HHeJ_G0012480.1 mouse_genomes_project 4 48235589 48236105 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017800.1 MGP_C3HHeJ_G0015294.1 mouse_genomes_project 4 6501189 6555060 + 4930412C18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017801.1 MGP_C3HHeJ_G0015294.1 mouse_genomes_project 4 6501189 6553600 + 4930412C18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017802.1 MGP_C3HHeJ_G0015294.1 mouse_genomes_project 4 6501255 6507560 + 4930412C18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017803.1 MGP_C3HHeJ_G0015294.1 mouse_genomes_project 4 6501283 6512484 + 4930412C18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017804.1 MGP_C3HHeJ_G0015294.1 mouse_genomes_project 4 6501401 6551935 + 4930412C18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0068063.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134524849 134565378 - MGP_C3HHeJ_P0068063 Dhdds protein_coding protein_coding MGP_C3HHeJ_T0068064.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134524878 134565375 - MGP_C3HHeJ_P0068064 Dhdds protein_coding protein_coding MGP_C3HHeJ_T0068065.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134524879 134539245 - Dhdds protein_coding processed_transcript MGP_C3HHeJ_T0068066.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134524884 134564881 - Dhdds protein_coding processed_transcript MGP_C3HHeJ_T0068067.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134524996 134565359 - Dhdds protein_coding processed_transcript MGP_C3HHeJ_T0068068.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134526013 134565359 - MGP_C3HHeJ_P0068068 Dhdds protein_coding protein_coding MGP_C3HHeJ_T0068069.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134526741 134558210 - MGP_C3HHeJ_P0068069 Dhdds protein_coding protein_coding MGP_C3HHeJ_T0068070.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134526769 134564881 - MGP_C3HHeJ_P0068070 Dhdds protein_coding protein_coding MGP_C3HHeJ_T0068071.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134526801 134564881 - MGP_C3HHeJ_P0068071 Dhdds protein_coding protein_coding MGP_C3HHeJ_T0068072.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134527063 134565406 - MGP_C3HHeJ_P0068072 Dhdds protein_coding protein_coding MGP_C3HHeJ_T0068073.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134538827 134561616 - Dhdds protein_coding processed_transcript MGP_C3HHeJ_T0007807.1 MGP_C3HHeJ_G0006378.1 mouse_genomes_project 4 91389943 91394775 + Gm12670 lincRNA lincRNA MGP_C3HHeJ_T0065432.1 MGP_C3HHeJ_G0028009.1 mouse_genomes_project 4 55362185 55363493 + MGP_C3HHeJ_P0065432 Gm26657 protein_coding protein_coding MGP_C3HHeJ_T0007949.1 MGP_C3HHeJ_G0006485.1 mouse_genomes_project 4 156951355 156951974 - Gm27202 lincRNA lincRNA MGP_C3HHeJ_T0014593.1 MGP_C3HHeJ_G0012697.1 mouse_genomes_project 4 126607387 126607806 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067949.1 MGP_C3HHeJ_G0028575.1 mouse_genomes_project 4 133239817 133249400 + Rpa2 protein_coding processed_transcript MGP_C3HHeJ_T0067950.1 MGP_C3HHeJ_G0028575.1 mouse_genomes_project 4 133239820 133251434 + MGP_C3HHeJ_P0067950 Rpa2 protein_coding protein_coding MGP_C3HHeJ_T0067951.1 MGP_C3HHeJ_G0028575.1 mouse_genomes_project 4 133239861 133246925 + Rpa2 protein_coding retained_intron MGP_C3HHeJ_T0067952.1 MGP_C3HHeJ_G0028575.1 mouse_genomes_project 4 133240120 133244809 + Rpa2 protein_coding retained_intron MGP_C3HHeJ_T0067953.1 MGP_C3HHeJ_G0028575.1 mouse_genomes_project 4 133243205 133244997 + Rpa2 protein_coding retained_intron MGP_C3HHeJ_T0067954.1 MGP_C3HHeJ_G0028575.1 mouse_genomes_project 4 133247817 133249844 + MGP_C3HHeJ_P0067954 Rpa2 protein_coding protein_coding MGP_C3HHeJ_T0067916.1 MGP_C3HHeJ_G0028568.1 mouse_genomes_project 4 132948805 132968568 - MGP_C3HHeJ_P0067916 Sesn2 protein_coding protein_coding MGP_C3HHeJ_T0014442.1 MGP_C3HHeJ_G0012546.1 mouse_genomes_project 4 75007272 75008101 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101987.1 MGP_C3HHeJ_G0039952.1 mouse_genomes_project 4 58743930 60690084 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014364.1 MGP_C3HHeJ_G0012468.1 mouse_genomes_project 4 43614162 43614456 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004388.1 MGP_C3HHeJ_G0003819.1 mouse_genomes_project 4 61008272 61015474 + Gm12910 antisense antisense MGP_C3HHeJ_T0007827.1 MGP_C3HHeJ_G0006395.1 mouse_genomes_project 4 103224542 103226408 + Gm44037 lincRNA lincRNA MGP_C3HHeJ_T0068790.1 MGP_C3HHeJ_G0028793.1 mouse_genomes_project 4 145971315 145971624 - MGP_C3HHeJ_P0068790 Gm9944 protein_coding protein_coding MGP_C3HHeJ_T0066495.1 MGP_C3HHeJ_G0028253.1 mouse_genomes_project 4 108735747 108751584 + Orc1 protein_coding processed_transcript MGP_C3HHeJ_T0066496.1 MGP_C3HHeJ_G0028253.1 mouse_genomes_project 4 108735758 108751725 + Orc1 protein_coding processed_transcript MGP_C3HHeJ_T0066497.1 MGP_C3HHeJ_G0028253.1 mouse_genomes_project 4 108735778 108774470 + MGP_C3HHeJ_P0066497 Orc1 protein_coding protein_coding MGP_C3HHeJ_T0066498.1 MGP_C3HHeJ_G0028253.1 mouse_genomes_project 4 108742915 108743706 + Orc1 protein_coding processed_transcript MGP_C3HHeJ_T0066499.1 MGP_C3HHeJ_G0028253.1 mouse_genomes_project 4 108760823 108762776 + Orc1 protein_coding processed_transcript MGP_C3HHeJ_T0014415.1 MGP_C3HHeJ_G0012519.1 mouse_genomes_project 4 63991590 63991948 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014548.1 MGP_C3HHeJ_G0012652.1 mouse_genomes_project 4 115778132 115778609 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004544.1 MGP_C3HHeJ_G0003936.1 mouse_genomes_project 4 158094546 158104653 + Atad3aos antisense antisense MGP_C3HHeJ_T0004545.1 MGP_C3HHeJ_G0003936.1 mouse_genomes_project 4 158094560 158095710 + Atad3aos antisense antisense MGP_C3HHeJ_T0004546.1 MGP_C3HHeJ_G0003936.1 mouse_genomes_project 4 158094578 158096999 + Atad3aos antisense antisense MGP_C3HHeJ_T0004547.1 MGP_C3HHeJ_G0003936.1 mouse_genomes_project 4 158094589 158097010 + Atad3aos antisense antisense MGP_C3HHeJ_T0004478.1 MGP_C3HHeJ_G0003885.1 mouse_genomes_project 4 135043157 135054554 - antisense antisense MGP_C3HHeJ_T0099342.1 MGP_C3HHeJ_G0037536.1 mouse_genomes_project 4 39128710 39128813 - Gm24650 snRNA snRNA MGP_C3HHeJ_T0065209.1 MGP_C3HHeJ_G0027945.1 mouse_genomes_project 4 43707989 43769333 - Shb protein_coding processed_transcript MGP_C3HHeJ_T0065210.1 MGP_C3HHeJ_G0027945.1 mouse_genomes_project 4 43707989 43819039 - MGP_C3HHeJ_P0065210 Shb protein_coding protein_coding MGP_C3HHeJ_T0065211.1 MGP_C3HHeJ_G0027945.1 mouse_genomes_project 4 43729425 43779386 - Shb protein_coding processed_transcript MGP_C3HHeJ_T0065212.1 MGP_C3HHeJ_G0027945.1 mouse_genomes_project 4 43732221 43775945 - Shb protein_coding retained_intron MGP_C3HHeJ_T0065213.1 MGP_C3HHeJ_G0027945.1 mouse_genomes_project 4 43742897 43776337 - MGP_C3HHeJ_P0065213 Shb protein_coding protein_coding MGP_C3HHeJ_T0065214.1 MGP_C3HHeJ_G0027945.1 mouse_genomes_project 4 43743088 43821179 - MGP_C3HHeJ_P0065214 Shb protein_coding protein_coding MGP_C3HHeJ_T0068313.1 MGP_C3HHeJ_G0028658.1 mouse_genomes_project 4 136921862 136945522 + MGP_C3HHeJ_P0068313 E2f2 protein_coding protein_coding MGP_C3HHeJ_T0068314.1 MGP_C3HHeJ_G0028658.1 mouse_genomes_project 4 136930251 136936272 + E2f2 protein_coding processed_transcript MGP_C3HHeJ_T0069128.1 MGP_C3HHeJ_G0028869.1 mouse_genomes_project 4 154185973 154194759 + MGP_C3HHeJ_P0069128 Klhl21 protein_coding protein_coding MGP_C3HHeJ_T0064450.1 MGP_C3HHeJ_G0027784.1 mouse_genomes_project 4 16888359 16941469 - MGP_C3HHeJ_P0064450 Atp6v0d2 protein_coding protein_coding MGP_C3HHeJ_T0064451.1 MGP_C3HHeJ_G0027784.1 mouse_genomes_project 4 16902365 16935803 - MGP_C3HHeJ_P0064451 Atp6v0d2 protein_coding protein_coding MGP_C3HHeJ_T0068751.1 MGP_C3HHeJ_G0028766.1 mouse_genomes_project 4 144654517 144660248 + MGP_C3HHeJ_P0068751 Pramel1 protein_coding protein_coding MGP_C3HHeJ_T0067029.1 MGP_C3HHeJ_G0028361.1 mouse_genomes_project 4 118868725 118915332 - MGP_C3HHeJ_P0067029 Szt2 protein_coding protein_coding MGP_C3HHeJ_T0067030.1 MGP_C3HHeJ_G0028361.1 mouse_genomes_project 4 118868729 118880011 - MGP_C3HHeJ_P0067030 Szt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067031.1 MGP_C3HHeJ_G0028361.1 mouse_genomes_project 4 118869391 118871033 - Szt2 protein_coding processed_transcript MGP_C3HHeJ_T0067032.1 MGP_C3HHeJ_G0028361.1 mouse_genomes_project 4 118874700 118875580 - Szt2 protein_coding retained_intron MGP_C3HHeJ_T0067033.1 MGP_C3HHeJ_G0028361.1 mouse_genomes_project 4 118878409 118879562 - Szt2 protein_coding retained_intron MGP_C3HHeJ_T0067034.1 MGP_C3HHeJ_G0028361.1 mouse_genomes_project 4 118895062 118895866 - Szt2 protein_coding processed_transcript MGP_C3HHeJ_T0004549.1 MGP_C3HHeJ_G0003938.1 mouse_genomes_project 4 158375749 158377567 - Gm16008 antisense antisense MGP_C3HHeJ_T0004550.1 MGP_C3HHeJ_G0003938.1 mouse_genomes_project 4 158377469 158385134 - Gm16008 antisense antisense MGP_C3HHeJ_T0004551.1 MGP_C3HHeJ_G0003938.1 mouse_genomes_project 4 158379806 158385113 - Gm16008 antisense antisense MGP_C3HHeJ_T0068818.1 MGP_C3HHeJ_G0028806.1 mouse_genomes_project 4 149486541 149487844 + MGP_C3HHeJ_P0068818 protein_coding protein_coding MGP_C3HHeJ_T0065980.1 MGP_C3HHeJ_G0028147.1 mouse_genomes_project 4 94496220 94625842 + MGP_C3HHeJ_P0065980 Tek protein_coding protein_coding MGP_C3HHeJ_T0065981.1 MGP_C3HHeJ_G0028147.1 mouse_genomes_project 4 94496231 94625805 + MGP_C3HHeJ_P0065981 Tek protein_coding protein_coding MGP_C3HHeJ_T0065982.1 MGP_C3HHeJ_G0028147.1 mouse_genomes_project 4 94496449 94625548 + MGP_C3HHeJ_P0065982 Tek protein_coding protein_coding MGP_C3HHeJ_T0065983.1 MGP_C3HHeJ_G0028147.1 mouse_genomes_project 4 94563335 94572612 + Tek protein_coding processed_transcript MGP_C3HHeJ_T0005550.1 MGP_C3HHeJ_G0004667.1 mouse_genomes_project 4 107909647 107920002 - Lrp8os3 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0011490.1 MGP_C3HHeJ_G0009623.1 mouse_genomes_project 4 144597212 144597520 + Gm26313 misc_RNA misc_RNA MGP_C3HHeJ_T0014224.1 MGP_C3HHeJ_G0012328.1 mouse_genomes_project 4 641898 642398 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100622.1 MGP_C3HHeJ_G0038816.1 mouse_genomes_project 4 46300432 46300575 + Gm22670 snoRNA snoRNA MGP_C3HHeJ_T0069387.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157576216 157677432 - MGP_C3HHeJ_P0069387 Prkcz protein_coding protein_coding MGP_C3HHeJ_T0069388.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157576595 157582831 - Prkcz protein_coding processed_transcript MGP_C3HHeJ_T0069389.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157576939 157677269 - MGP_C3HHeJ_P0069389 Prkcz protein_coding protein_coding MGP_C3HHeJ_T0069390.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157585628 157587538 - Prkcz protein_coding processed_transcript MGP_C3HHeJ_T0069391.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157605980 157660436 - MGP_C3HHeJ_P0069391 Prkcz protein_coding protein_coding MGP_C3HHeJ_T0069392.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157605980 157660219 - MGP_C3HHeJ_P0069392 Prkcz protein_coding protein_coding MGP_C3HHeJ_T0069393.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157605983 157660316 - Prkcz protein_coding processed_transcript MGP_C3HHeJ_T0069394.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157609576 157616485 - Prkcz protein_coding processed_transcript MGP_C3HHeJ_T0069395.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157609651 157659794 - Prkcz protein_coding processed_transcript MGP_C3HHeJ_T0069396.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157671432 157677411 - MGP_C3HHeJ_P0069396 Prkcz protein_coding protein_coding MGP_C3HHeJ_T0099410.1 MGP_C3HHeJ_G0037604.1 mouse_genomes_project 4 151555320 151555424 - Gm24381 snRNA snRNA MGP_C3HHeJ_T0014295.1 MGP_C3HHeJ_G0012399.1 mouse_genomes_project 4 21534278 21535994 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014299.1 MGP_C3HHeJ_G0012403.1 mouse_genomes_project 4 22682072 22682892 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069181.1 MGP_C3HHeJ_G0028878.1 mouse_genomes_project 4 154468126 154480148 + MGP_C3HHeJ_P0069181 Gpr153 protein_coding protein_coding MGP_C3HHeJ_T0069182.1 MGP_C3HHeJ_G0028878.1 mouse_genomes_project 4 154468256 154480148 + MGP_C3HHeJ_P0069182 Gpr153 protein_coding protein_coding MGP_C3HHeJ_T0069183.1 MGP_C3HHeJ_G0028878.1 mouse_genomes_project 4 154473823 154480148 + MGP_C3HHeJ_P0069183 Gpr153 protein_coding protein_coding MGP_C3HHeJ_T0069184.1 MGP_C3HHeJ_G0028878.1 mouse_genomes_project 4 154477180 154480147 + Gpr153 protein_coding processed_transcript MGP_C3HHeJ_T0068215.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 135990674 136030321 - MGP_C3HHeJ_P0068215 Srrm1 protein_coding protein_coding MGP_C3HHeJ_T0068216.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 135990681 136030244 - MGP_C3HHeJ_P0068216 Srrm1 protein_coding protein_coding MGP_C3HHeJ_T0068217.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 135991284 136030244 - MGP_C3HHeJ_P0068217 Srrm1 protein_coding protein_coding MGP_C3HHeJ_T0068218.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 135992223 136030136 - MGP_C3HHeJ_P0068218 Srrm1 protein_coding protein_coding MGP_C3HHeJ_T0068219.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 135992480 135997426 - MGP_C3HHeJ_P0068219 Srrm1 protein_coding protein_coding MGP_C3HHeJ_T0068220.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 135992666 136030134 - Srrm1 protein_coding retained_intron MGP_C3HHeJ_T0068221.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 135993958 135995040 - Srrm1 protein_coding retained_intron MGP_C3HHeJ_T0068222.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 135999371 136002436 - Srrm1 protein_coding retained_intron MGP_C3HHeJ_T0068223.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 136001680 136011992 - Srrm1 protein_coding retained_intron MGP_C3HHeJ_T0068224.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 136002360 136016385 - MGP_C3HHeJ_P0068224 Srrm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068225.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 136012187 136016441 - Srrm1 protein_coding retained_intron MGP_C3HHeJ_T0068226.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 136016333 136030142 - MGP_C3HHeJ_P0068226 Srrm1 protein_coding protein_coding MGP_C3HHeJ_T0068227.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 136017559 136030151 - Srrm1 protein_coding retained_intron MGP_C3HHeJ_T0068228.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 136018450 136021127 - MGP_C3HHeJ_P0068228 Srrm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068229.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 136019614 136030202 - Srrm1 protein_coding processed_transcript MGP_C3HHeJ_T0014614.1 MGP_C3HHeJ_G0012718.1 mouse_genomes_project 4 134427502 134427685 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100618.1 MGP_C3HHeJ_G0038812.1 mouse_genomes_project 4 39171108 39171186 - Gm23090 snoRNA snoRNA MGP_C3HHeJ_T0014604.1 MGP_C3HHeJ_G0012708.1 mouse_genomes_project 4 130030418 130030706 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066236.1 MGP_C3HHeJ_G0028202.1 mouse_genomes_project 4 103177144 103222005 - MGP_C3HHeJ_P0066236 Slc35d1 protein_coding protein_coding MGP_C3HHeJ_T0066237.1 MGP_C3HHeJ_G0028202.1 mouse_genomes_project 4 103177151 103221644 - MGP_C3HHeJ_P0066237 Slc35d1 protein_coding protein_coding MGP_C3HHeJ_T0066238.1 MGP_C3HHeJ_G0028202.1 mouse_genomes_project 4 103207671 103221644 - MGP_C3HHeJ_P0066238 Slc35d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066239.1 MGP_C3HHeJ_G0028202.1 mouse_genomes_project 4 103217174 103221640 - Slc35d1 protein_coding retained_intron MGP_C3HHeJ_T0066240.1 MGP_C3HHeJ_G0028202.1 mouse_genomes_project 4 103217395 103221513 - Slc35d1 protein_coding retained_intron MGP_C3HHeJ_T0014225.1 MGP_C3HHeJ_G0012329.1 mouse_genomes_project 4 1206061 1206577 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064630.1 MGP_C3HHeJ_G0027826.1 mouse_genomes_project 4 32158953 32204611 + MGP_C3HHeJ_P0064630 Rars2 protein_coding protein_coding MGP_C3HHeJ_T0064631.1 MGP_C3HHeJ_G0027826.1 mouse_genomes_project 4 32158957 32162902 + Rars2 protein_coding processed_transcript MGP_C3HHeJ_T0064632.1 MGP_C3HHeJ_G0027826.1 mouse_genomes_project 4 32158965 32169461 + Rars2 protein_coding processed_transcript MGP_C3HHeJ_T0064633.1 MGP_C3HHeJ_G0027826.1 mouse_genomes_project 4 32158970 32204607 + Rars2 protein_coding processed_transcript MGP_C3HHeJ_T0064634.1 MGP_C3HHeJ_G0027826.1 mouse_genomes_project 4 32158972 32174690 + MGP_C3HHeJ_P0064634 Rars2 protein_coding protein_coding MGP_C3HHeJ_T0064635.1 MGP_C3HHeJ_G0027826.1 mouse_genomes_project 4 32158974 32167453 + Rars2 protein_coding processed_transcript MGP_C3HHeJ_T0064636.1 MGP_C3HHeJ_G0027826.1 mouse_genomes_project 4 32192003 32200554 + Rars2 protein_coding processed_transcript MGP_C3HHeJ_T0065238.1 MGP_C3HHeJ_G0027952.1 mouse_genomes_project 4 44425343 44451656 - MGP_C3HHeJ_P0065238 Tstd2 protein_coding protein_coding MGP_C3HHeJ_T0065239.1 MGP_C3HHeJ_G0027952.1 mouse_genomes_project 4 44426283 44451619 - MGP_C3HHeJ_P0065239 Tstd2 protein_coding protein_coding MGP_C3HHeJ_T0065240.1 MGP_C3HHeJ_G0027952.1 mouse_genomes_project 4 44433960 44451594 - Tstd2 protein_coding retained_intron MGP_C3HHeJ_T0065241.1 MGP_C3HHeJ_G0027952.1 mouse_genomes_project 4 44440331 44444607 - Tstd2 protein_coding retained_intron MGP_C3HHeJ_T0065242.1 MGP_C3HHeJ_G0027952.1 mouse_genomes_project 4 44444617 44451875 - MGP_C3HHeJ_P0065242 Tstd2 protein_coding protein_coding MGP_C3HHeJ_T0065243.1 MGP_C3HHeJ_G0027952.1 mouse_genomes_project 4 44444680 44451590 - MGP_C3HHeJ_P0065243 Tstd2 protein_coding protein_coding MGP_C3HHeJ_T0065244.1 MGP_C3HHeJ_G0027952.1 mouse_genomes_project 4 44444829 44448964 - MGP_C3HHeJ_P0065244 Tstd2 protein_coding protein_coding MGP_C3HHeJ_T0065245.1 MGP_C3HHeJ_G0027952.1 mouse_genomes_project 4 44448687 44451636 - MGP_C3HHeJ_P0065245 Tstd2 protein_coding protein_coding MGP_C3HHeJ_T0068018.1 MGP_C3HHeJ_G0028592.1 mouse_genomes_project 4 134040161 134049961 + MGP_C3HHeJ_P0068018 Kdf1 protein_coding protein_coding MGP_C3HHeJ_T0068019.1 MGP_C3HHeJ_G0028592.1 mouse_genomes_project 4 134040190 134051829 + MGP_C3HHeJ_P0068019 Kdf1 protein_coding protein_coding MGP_C3HHeJ_T0068020.1 MGP_C3HHeJ_G0028592.1 mouse_genomes_project 4 134040221 134049684 + MGP_C3HHeJ_P0068020 Kdf1 protein_coding protein_coding MGP_C3HHeJ_T0068021.1 MGP_C3HHeJ_G0028592.1 mouse_genomes_project 4 134040253 134051824 + MGP_C3HHeJ_P0068021 Kdf1 protein_coding protein_coding MGP_C3HHeJ_T0068022.1 MGP_C3HHeJ_G0028592.1 mouse_genomes_project 4 134040281 134051826 + MGP_C3HHeJ_P0068022 Kdf1 protein_coding protein_coding MGP_C3HHeJ_T0064395.1 MGP_C3HHeJ_G0027763.1 mouse_genomes_project 4 9757888 9826431 + MGP_C3HHeJ_P0064395 Triqk protein_coding protein_coding MGP_C3HHeJ_T0064396.1 MGP_C3HHeJ_G0027763.1 mouse_genomes_project 4 9757908 9829098 + MGP_C3HHeJ_P0064396 Triqk protein_coding protein_coding MGP_C3HHeJ_T0064397.1 MGP_C3HHeJ_G0027763.1 mouse_genomes_project 4 9769017 9826628 + Triqk protein_coding processed_transcript MGP_C3HHeJ_T0014255.1 MGP_C3HHeJ_G0012359.1 mouse_genomes_project 4 11689989 11690866 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007729.1 MGP_C3HHeJ_G0006311.1 mouse_genomes_project 4 19577855 19582484 + lincRNA lincRNA MGP_C3HHeJ_T0010571.1 MGP_C3HHeJ_G0008704.1 mouse_genomes_project 4 158407845 158407928 - Mir429 miRNA miRNA MGP_C3HHeJ_T0007907.1 MGP_C3HHeJ_G0006447.1 mouse_genomes_project 4 132789086 132790699 + Gm17300 lincRNA lincRNA MGP_C3HHeJ_T0014480.1 MGP_C3HHeJ_G0012584.1 mouse_genomes_project 4 90904845 90905451 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066137.1 MGP_C3HHeJ_G0028182.1 mouse_genomes_project 4 100689793 100921367 + MGP_C3HHeJ_P0066137 Cachd1 protein_coding protein_coding MGP_C3HHeJ_T0066138.1 MGP_C3HHeJ_G0028182.1 mouse_genomes_project 4 100689793 100939982 + MGP_C3HHeJ_P0066138 Cachd1 protein_coding protein_coding MGP_C3HHeJ_T0066139.1 MGP_C3HHeJ_G0028182.1 mouse_genomes_project 4 100911396 100919876 + Cachd1 protein_coding processed_transcript MGP_C3HHeJ_T0066140.1 MGP_C3HHeJ_G0028182.1 mouse_genomes_project 4 100911495 100920046 + Cachd1 protein_coding processed_transcript MGP_C3HHeJ_T0067673.1 MGP_C3HHeJ_G0028525.1 mouse_genomes_project 4 129827859 129828502 - Fam167b protein_coding processed_transcript MGP_C3HHeJ_T0067674.1 MGP_C3HHeJ_G0028525.1 mouse_genomes_project 4 129827859 129829594 - MGP_C3HHeJ_P0067674 Fam167b protein_coding protein_coding MGP_C3HHeJ_T0064864.1 MGP_C3HHeJ_G0027884.1 mouse_genomes_project 4 40344389 40345519 + MGP_C3HHeJ_P0064864 protein_coding protein_coding MGP_C3HHeJ_T0068913.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150583313 150599850 - MGP_C3HHeJ_P0068913 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068914.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150583313 150599827 - MGP_C3HHeJ_P0068914 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068915.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150583313 150599827 - MGP_C3HHeJ_P0068915 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068916.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150583313 150599827 - MGP_C3HHeJ_P0068916 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068917.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150583318 150599593 - MGP_C3HHeJ_P0068917 Tardbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068918.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150583319 150587057 - Tardbp protein_coding processed_transcript MGP_C3HHeJ_T0068919.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150583319 150590289 - MGP_C3HHeJ_P0068919 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068920.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150583416 150590798 - MGP_C3HHeJ_P0068920 Tardbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068921.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150586837 150599596 - MGP_C3HHeJ_P0068921 Tardbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068922.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150587634 150593519 - MGP_C3HHeJ_P0068922 Tardbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068923.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150587643 150592207 - MGP_C3HHeJ_P0068923 Tardbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068924.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150587643 150599589 - MGP_C3HHeJ_P0068924 Tardbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068925.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150587644 150590872 - MGP_C3HHeJ_P0068925 Tardbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068926.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150588852 150596918 - MGP_C3HHeJ_P0068926 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068927.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150588955 150596918 - MGP_C3HHeJ_P0068927 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068928.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150588955 150596918 - MGP_C3HHeJ_P0068928 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068929.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150589009 150593626 - MGP_C3HHeJ_P0068929 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068930.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150589552 150599601 - MGP_C3HHeJ_P0068930 Tardbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068931.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150590122 150599585 - MGP_C3HHeJ_P0068931 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068932.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150592209 150599157 - MGP_C3HHeJ_P0068932 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068933.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150596640 150599589 - Tardbp protein_coding retained_intron MGP_C3HHeJ_T0068766.1 MGP_C3HHeJ_G0028776.1 mouse_genomes_project 4 145004348 145014416 + MGP_C3HHeJ_P0068766 protein_coding protein_coding MGP_C3HHeJ_T0011479.1 MGP_C3HHeJ_G0009612.1 mouse_genomes_project 4 98108951 98109065 + Gm24203 misc_RNA misc_RNA MGP_C3HHeJ_T0065215.1 MGP_C3HHeJ_G0027946.1 mouse_genomes_project 4 44097871 44104495 + MGP_C3HHeJ_P0065215 Aldh1b1 protein_coding protein_coding MGP_C3HHeJ_T0065216.1 MGP_C3HHeJ_G0027946.1 mouse_genomes_project 4 44097970 44102749 + MGP_C3HHeJ_P0065216 Aldh1b1 protein_coding protein_coding MGP_C3HHeJ_T0007879.1 MGP_C3HHeJ_G0006432.1 mouse_genomes_project 4 129482600 129485648 + Gm12976 lincRNA lincRNA MGP_C3HHeJ_T0007880.1 MGP_C3HHeJ_G0006432.1 mouse_genomes_project 4 129484393 129485648 + Gm12976 lincRNA lincRNA MGP_C3HHeJ_T0067585.1 MGP_C3HHeJ_G0028507.1 mouse_genomes_project 4 129266046 129293222 + MGP_C3HHeJ_P0067585 Rnf19b protein_coding protein_coding MGP_C3HHeJ_T0067586.1 MGP_C3HHeJ_G0028507.1 mouse_genomes_project 4 129266046 129294431 + MGP_C3HHeJ_P0067586 Rnf19b protein_coding protein_coding MGP_C3HHeJ_T0067587.1 MGP_C3HHeJ_G0028507.1 mouse_genomes_project 4 129266184 129289265 + MGP_C3HHeJ_P0067587 Rnf19b protein_coding protein_coding MGP_C3HHeJ_T0067588.1 MGP_C3HHeJ_G0028507.1 mouse_genomes_project 4 129266589 129293222 + MGP_C3HHeJ_P0067588 Rnf19b protein_coding protein_coding MGP_C3HHeJ_T0067589.1 MGP_C3HHeJ_G0028507.1 mouse_genomes_project 4 129287686 129294582 + MGP_C3HHeJ_P0067589 Rnf19b protein_coding protein_coding MGP_C3HHeJ_T0067590.1 MGP_C3HHeJ_G0028507.1 mouse_genomes_project 4 129292580 129294582 + Rnf19b protein_coding processed_transcript MGP_C3HHeJ_T0100631.1 MGP_C3HHeJ_G0038825.1 mouse_genomes_project 4 55384085 55384205 - Gm22952 snoRNA snoRNA MGP_C3HHeJ_T0100653.1 MGP_C3HHeJ_G0038847.1 mouse_genomes_project 4 102737917 102738045 + Gm24869 snoRNA snoRNA MGP_C3HHeJ_T0069590.1 MGP_C3HHeJ_G0028953.1 mouse_genomes_project 4 158593026 158600101 - MGP_C3HHeJ_P0069590 Plekhn1 protein_coding protein_coding MGP_C3HHeJ_T0069591.1 MGP_C3HHeJ_G0028953.1 mouse_genomes_project 4 158593349 158600050 - MGP_C3HHeJ_P0069591 Plekhn1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0100637.1 MGP_C3HHeJ_G0038831.1 mouse_genomes_project 4 63402243 63402372 + Gm23950 snoRNA snoRNA MGP_C3HHeJ_T0067889.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132743622 132763397 - MGP_C3HHeJ_P0067889 Trnau1ap protein_coding protein_coding MGP_C3HHeJ_T0067890.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132743622 132763348 - MGP_C3HHeJ_P0067890 Trnau1ap protein_coding protein_coding MGP_C3HHeJ_T0067891.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132743624 132763375 - Trnau1ap protein_coding retained_intron MGP_C3HHeJ_T0067892.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132743708 132763353 - Trnau1ap protein_coding processed_transcript MGP_C3HHeJ_T0067893.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132743724 132763248 - MGP_C3HHeJ_P0067893 Trnau1ap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067894.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132746066 132763273 - MGP_C3HHeJ_P0067894 Trnau1ap protein_coding protein_coding MGP_C3HHeJ_T0067895.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132746172 132763363 - MGP_C3HHeJ_P0067895 Trnau1ap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067896.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132746209 132763341 - Trnau1ap protein_coding processed_transcript MGP_C3HHeJ_T0067897.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132746212 132763397 - MGP_C3HHeJ_P0067897 Trnau1ap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067898.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132755059 132759135 - Trnau1ap protein_coding retained_intron MGP_C3HHeJ_T0067899.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132755537 132763397 - MGP_C3HHeJ_P0067899 Trnau1ap protein_coding protein_coding MGP_C3HHeJ_T0067900.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132761967 132763374 - Trnau1ap protein_coding retained_intron MGP_C3HHeJ_T0014564.1 MGP_C3HHeJ_G0012668.1 mouse_genomes_project 4 118996171 118996598 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069511.1 MGP_C3HHeJ_G0028936.1 mouse_genomes_project 4 158199034 158203113 - MGP_C3HHeJ_P0069511 Tas1r3 protein_coding protein_coding MGP_C3HHeJ_T0007741.1 MGP_C3HHeJ_G0006323.1 mouse_genomes_project 4 34918334 35010551 + Gm12374 lincRNA lincRNA MGP_C3HHeJ_T0004504.1 MGP_C3HHeJ_G0003907.1 mouse_genomes_project 4 143270196 143274244 + Tmem51os1 antisense antisense MGP_C3HHeJ_T0004505.1 MGP_C3HHeJ_G0003907.1 mouse_genomes_project 4 143270522 143274300 + Tmem51os1 antisense antisense MGP_C3HHeJ_T0004506.1 MGP_C3HHeJ_G0003907.1 mouse_genomes_project 4 143270564 143274237 + Tmem51os1 antisense antisense MGP_C3HHeJ_T0004507.1 MGP_C3HHeJ_G0003907.1 mouse_genomes_project 4 143271080 143274278 + Tmem51os1 antisense antisense MGP_C3HHeJ_T0068869.1 MGP_C3HHeJ_G0028821.1 mouse_genomes_project 4 150088802 150095224 - MGP_C3HHeJ_P0068869 Fbxo6 protein_coding protein_coding MGP_C3HHeJ_T0068870.1 MGP_C3HHeJ_G0028821.1 mouse_genomes_project 4 150088802 150094998 - MGP_C3HHeJ_P0068870 Fbxo6 protein_coding protein_coding MGP_C3HHeJ_T0068871.1 MGP_C3HHeJ_G0028821.1 mouse_genomes_project 4 150088873 150095003 - MGP_C3HHeJ_P0068871 Fbxo6 protein_coding protein_coding MGP_C3HHeJ_T0068872.1 MGP_C3HHeJ_G0028821.1 mouse_genomes_project 4 150088874 150095148 - MGP_C3HHeJ_P0068872 Fbxo6 protein_coding protein_coding MGP_C3HHeJ_T0068873.1 MGP_C3HHeJ_G0028821.1 mouse_genomes_project 4 150089095 150095229 - MGP_C3HHeJ_P0068873 Fbxo6 protein_coding protein_coding MGP_C3HHeJ_T0068874.1 MGP_C3HHeJ_G0028821.1 mouse_genomes_project 4 150089178 150092820 - MGP_C3HHeJ_P0068874 Fbxo6 protein_coding protein_coding MGP_C3HHeJ_T0068875.1 MGP_C3HHeJ_G0028821.1 mouse_genomes_project 4 150089204 150095015 - MGP_C3HHeJ_P0068875 Fbxo6 protein_coding protein_coding MGP_C3HHeJ_T0068876.1 MGP_C3HHeJ_G0028821.1 mouse_genomes_project 4 150092544 150094736 - MGP_C3HHeJ_P0068876 Fbxo6 protein_coding protein_coding MGP_C3HHeJ_T0007864.1 MGP_C3HHeJ_G0006422.1 mouse_genomes_project 4 125256066 125269199 + 1700041M05Rik lincRNA lincRNA MGP_C3HHeJ_T0014495.1 MGP_C3HHeJ_G0012599.1 mouse_genomes_project 4 97970074 97970530 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064440.1 MGP_C3HHeJ_G0027778.1 mouse_genomes_project 4 16286311 16526580 + MGP_C3HHeJ_P0064440 Cngb3 protein_coding protein_coding MGP_C3HHeJ_T0100628.1 MGP_C3HHeJ_G0038822.1 mouse_genomes_project 4 53865864 53866079 - Gm25419 snoRNA snoRNA MGP_C3HHeJ_T0004409.1 MGP_C3HHeJ_G0003832.1 mouse_genomes_project 4 98151100 98152553 + 0610025J13Rik antisense antisense MGP_C3HHeJ_T0004410.1 MGP_C3HHeJ_G0003832.1 mouse_genomes_project 4 98151150 98161519 + 0610025J13Rik antisense antisense MGP_C3HHeJ_T0004411.1 MGP_C3HHeJ_G0003832.1 mouse_genomes_project 4 98151150 98161519 + 0610025J13Rik antisense antisense MGP_C3HHeJ_T0064269.1 MGP_C3HHeJ_G0027739.1 mouse_genomes_project 4 5211037 5285855 + MGP_C3HHeJ_P0064269 Rab2a protein_coding protein_coding MGP_C3HHeJ_T0100644.1 MGP_C3HHeJ_G0038838.1 mouse_genomes_project 4 74419765 74419895 - Gm22864 snoRNA snoRNA MGP_C3HHeJ_T0014421.1 MGP_C3HHeJ_G0012525.1 mouse_genomes_project 4 68376889 68380382 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069593.1 MGP_C3HHeJ_G0028955.1 mouse_genomes_project 4 158610346 158624503 + MGP_C3HHeJ_P0069593 Noc2l protein_coding protein_coding MGP_C3HHeJ_T0069594.1 MGP_C3HHeJ_G0028955.1 mouse_genomes_project 4 158610387 158624490 + MGP_C3HHeJ_P0069594 Noc2l protein_coding protein_coding MGP_C3HHeJ_T0068709.1 MGP_C3HHeJ_G0028755.1 mouse_genomes_project 4 142932832 142964033 - MGP_C3HHeJ_P0068709 Dnajc16 protein_coding protein_coding MGP_C3HHeJ_T0068710.1 MGP_C3HHeJ_G0028755.1 mouse_genomes_project 4 142942432 142946831 - Dnajc16 protein_coding processed_transcript MGP_C3HHeJ_T0068711.1 MGP_C3HHeJ_G0028755.1 mouse_genomes_project 4 142956210 142964073 - MGP_C3HHeJ_P0068711 Dnajc16 protein_coding protein_coding MGP_C3HHeJ_T0066332.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107166374 107177635 + Cyb5rl protein_coding retained_intron MGP_C3HHeJ_T0066333.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107166374 107185174 + MGP_C3HHeJ_P0066333 Cyb5rl protein_coding protein_coding MGP_C3HHeJ_T0066334.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107166382 107170302 + MGP_C3HHeJ_P0066334 Cyb5rl protein_coding protein_coding MGP_C3HHeJ_T0066335.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107166382 107186909 + MGP_C3HHeJ_P0066335 Cyb5rl protein_coding protein_coding MGP_C3HHeJ_T0066336.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107166405 107187616 + MGP_C3HHeJ_P0066336 Cyb5rl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066337.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107166410 107170318 + MGP_C3HHeJ_P0066337 Cyb5rl protein_coding protein_coding MGP_C3HHeJ_T0066338.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107167991 107185174 + MGP_C3HHeJ_P0066338 Cyb5rl protein_coding protein_coding MGP_C3HHeJ_T0066339.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107168029 107187339 + MGP_C3HHeJ_P0066339 Cyb5rl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066340.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107169554 107184152 + MGP_C3HHeJ_P0066340 Cyb5rl protein_coding protein_coding MGP_C3HHeJ_T0066341.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107170256 107183687 + MGP_C3HHeJ_P0066341 Cyb5rl protein_coding protein_coding MGP_C3HHeJ_T0066342.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107180374 107187125 + MGP_C3HHeJ_P0066342 Cyb5rl protein_coding protein_coding MGP_C3HHeJ_T0065677.1 MGP_C3HHeJ_G0028074.1 mouse_genomes_project 4 64612870 64624736 + MGP_C3HHeJ_P0065677 Trim32 protein_coding protein_coding MGP_C3HHeJ_T0065678.1 MGP_C3HHeJ_G0028074.1 mouse_genomes_project 4 64612870 64624736 + MGP_C3HHeJ_P0065678 Trim32 protein_coding protein_coding MGP_C3HHeJ_T0065679.1 MGP_C3HHeJ_G0028074.1 mouse_genomes_project 4 64613133 64622114 + MGP_C3HHeJ_P0065679 Trim32 protein_coding protein_coding MGP_C3HHeJ_T0065680.1 MGP_C3HHeJ_G0028074.1 mouse_genomes_project 4 64613133 64622254 + MGP_C3HHeJ_P0065680 Trim32 protein_coding protein_coding MGP_C3HHeJ_T0066448.1 MGP_C3HHeJ_G0028244.1 mouse_genomes_project 4 108170569 108251065 - MGP_C3HHeJ_P0066448 Scp2 protein_coding protein_coding MGP_C3HHeJ_T0066449.1 MGP_C3HHeJ_G0028244.1 mouse_genomes_project 4 108170998 108176065 - Scp2 protein_coding processed_transcript MGP_C3HHeJ_T0066450.1 MGP_C3HHeJ_G0028244.1 mouse_genomes_project 4 108171108 108199796 - Scp2 protein_coding processed_transcript MGP_C3HHeJ_T0066451.1 MGP_C3HHeJ_G0028244.1 mouse_genomes_project 4 108171280 108199852 - MGP_C3HHeJ_P0066451 Scp2 protein_coding protein_coding MGP_C3HHeJ_T0066452.1 MGP_C3HHeJ_G0028244.1 mouse_genomes_project 4 108173062 108251009 - Scp2 protein_coding processed_transcript MGP_C3HHeJ_T0066453.1 MGP_C3HHeJ_G0028244.1 mouse_genomes_project 4 108218971 108251037 - MGP_C3HHeJ_P0066453 Scp2 protein_coding protein_coding MGP_C3HHeJ_T0066454.1 MGP_C3HHeJ_G0028244.1 mouse_genomes_project 4 108222984 108250928 - Scp2 protein_coding processed_transcript MGP_C3HHeJ_T0066455.1 MGP_C3HHeJ_G0028244.1 mouse_genomes_project 4 108223293 108281068 - Scp2 protein_coding processed_transcript MGP_C3HHeJ_T0066456.1 MGP_C3HHeJ_G0028244.1 mouse_genomes_project 4 108234145 108281072 - MGP_C3HHeJ_P0066456 Scp2 protein_coding protein_coding MGP_C3HHeJ_T0069410.1 MGP_C3HHeJ_G0028916.1 mouse_genomes_project 4 157794140 157795442 + Tmem52 protein_coding retained_intron MGP_C3HHeJ_T0069411.1 MGP_C3HHeJ_G0028916.1 mouse_genomes_project 4 157794140 157795885 + MGP_C3HHeJ_P0069411 Tmem52 protein_coding protein_coding MGP_C3HHeJ_T0069412.1 MGP_C3HHeJ_G0028916.1 mouse_genomes_project 4 157794140 157795885 + MGP_C3HHeJ_P0069412 Tmem52 protein_coding protein_coding MGP_C3HHeJ_T0069413.1 MGP_C3HHeJ_G0028916.1 mouse_genomes_project 4 157794157 157795884 + MGP_C3HHeJ_P0069413 Tmem52 protein_coding protein_coding MGP_C3HHeJ_T0069414.1 MGP_C3HHeJ_G0028916.1 mouse_genomes_project 4 157794173 157795816 + Tmem52 protein_coding retained_intron MGP_C3HHeJ_T0010529.1 MGP_C3HHeJ_G0008662.1 mouse_genomes_project 4 119656894 119656960 + Mir1957a miRNA miRNA MGP_C3HHeJ_T0014341.1 MGP_C3HHeJ_G0012445.1 mouse_genomes_project 4 33594481 33595423 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068736.1 MGP_C3HHeJ_G0028762.1 mouse_genomes_project 4 143289362 143401334 - MGP_C3HHeJ_P0068736 protein_coding protein_coding MGP_C3HHeJ_T0068737.1 MGP_C3HHeJ_G0028762.1 mouse_genomes_project 4 143300006 143305845 - protein_coding processed_transcript MGP_C3HHeJ_T0068738.1 MGP_C3HHeJ_G0028762.1 mouse_genomes_project 4 143305966 143347557 - MGP_C3HHeJ_P0068738 protein_coding protein_coding MGP_C3HHeJ_T0068739.1 MGP_C3HHeJ_G0028762.1 mouse_genomes_project 4 143327866 143431877 - MGP_C3HHeJ_P0068739 protein_coding protein_coding MGP_C3HHeJ_T0068740.1 MGP_C3HHeJ_G0028762.1 mouse_genomes_project 4 143327873 143401236 - MGP_C3HHeJ_P0068740 protein_coding protein_coding MGP_C3HHeJ_T0068741.1 MGP_C3HHeJ_G0028762.1 mouse_genomes_project 4 143327874 143335085 - protein_coding retained_intron MGP_C3HHeJ_T0068742.1 MGP_C3HHeJ_G0028762.1 mouse_genomes_project 4 143330175 143401334 - MGP_C3HHeJ_P0068742 protein_coding protein_coding MGP_C3HHeJ_T0068743.1 MGP_C3HHeJ_G0028762.1 mouse_genomes_project 4 143335389 143343187 - protein_coding retained_intron MGP_C3HHeJ_T0014656.1 MGP_C3HHeJ_G0012760.1 mouse_genomes_project 4 152306548 152306913 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099401.1 MGP_C3HHeJ_G0037595.1 mouse_genomes_project 4 136882226 136882329 + Gm26001 snRNA snRNA MGP_C3HHeJ_T0014539.1 MGP_C3HHeJ_G0012643.1 mouse_genomes_project 4 110727726 110727994 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066145.1 MGP_C3HHeJ_G0028185.1 mouse_genomes_project 4 101059035 101180839 - MGP_C3HHeJ_P0066145 Jak1 protein_coding protein_coding MGP_C3HHeJ_T0066146.1 MGP_C3HHeJ_G0028185.1 mouse_genomes_project 4 101060917 101061788 - Jak1 protein_coding processed_transcript MGP_C3HHeJ_T0066147.1 MGP_C3HHeJ_G0028185.1 mouse_genomes_project 4 101085901 101091719 - Jak1 protein_coding processed_transcript MGP_C3HHeJ_T0066148.1 MGP_C3HHeJ_G0028185.1 mouse_genomes_project 4 101087329 101091744 - Jak1 protein_coding processed_transcript MGP_C3HHeJ_T0066149.1 MGP_C3HHeJ_G0028185.1 mouse_genomes_project 4 101088182 101180838 - Jak1 protein_coding processed_transcript MGP_C3HHeJ_T0066150.1 MGP_C3HHeJ_G0028185.1 mouse_genomes_project 4 101088222 101180780 - Jak1 protein_coding processed_transcript MGP_C3HHeJ_T0066151.1 MGP_C3HHeJ_G0028185.1 mouse_genomes_project 4 101097918 101180830 - MGP_C3HHeJ_P0066151 Jak1 protein_coding protein_coding MGP_C3HHeJ_T0066152.1 MGP_C3HHeJ_G0028185.1 mouse_genomes_project 4 101104130 101180783 - Jak1 protein_coding processed_transcript MGP_C3HHeJ_T0069112.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154108916 154157980 + MGP_C3HHeJ_P0069112 Dnajc11 protein_coding protein_coding MGP_C3HHeJ_T0069113.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154108956 154152527 + Dnajc11 protein_coding retained_intron MGP_C3HHeJ_T0069114.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154108959 154133456 + Dnajc11 protein_coding retained_intron MGP_C3HHeJ_T0069115.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154108964 154157061 + Dnajc11 protein_coding retained_intron MGP_C3HHeJ_T0069116.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154108969 154157065 + MGP_C3HHeJ_P0069116 Dnajc11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069117.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154122329 154144414 + MGP_C3HHeJ_P0069117 Dnajc11 protein_coding protein_coding MGP_C3HHeJ_T0069118.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154133103 154147344 + Dnajc11 protein_coding processed_transcript MGP_C3HHeJ_T0069119.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154143635 154150127 + Dnajc11 protein_coding processed_transcript MGP_C3HHeJ_T0069120.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154145547 154152888 + Dnajc11 protein_coding retained_intron MGP_C3HHeJ_T0069121.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154145616 154147341 + Dnajc11 protein_coding retained_intron MGP_C3HHeJ_T0069122.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154154826 154156579 + Dnajc11 protein_coding retained_intron MGP_C3HHeJ_T0069123.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154155585 154157070 + Dnajc11 protein_coding retained_intron MGP_C3HHeJ_T0017847.1 MGP_C3HHeJ_G0015323.1 mouse_genomes_project 4 97571800 97574977 - Gm12676 processed_transcript processed_transcript MGP_C3HHeJ_T0066479.1 MGP_C3HHeJ_G0028250.1 mouse_genomes_project 4 108545048 108551831 - MGP_C3HHeJ_P0066479 Gpx7 protein_coding protein_coding MGP_C3HHeJ_T0066480.1 MGP_C3HHeJ_G0028250.1 mouse_genomes_project 4 108545507 108551594 - MGP_C3HHeJ_P0066480 Gpx7 protein_coding protein_coding MGP_C3HHeJ_T0014390.1 MGP_C3HHeJ_G0012494.1 mouse_genomes_project 4 52437762 52438166 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102006.1 MGP_C3HHeJ_G0039971.1 mouse_genomes_project 4 114353004 114354014 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0069185.1 MGP_C3HHeJ_G0028879.1 mouse_genomes_project 4 154481698 154482871 - MGP_C3HHeJ_P0069185 Hes3 protein_coding protein_coding MGP_C3HHeJ_T0068545.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140348437 140469776 + MGP_C3HHeJ_P0068545 Ubr4 protein_coding protein_coding MGP_C3HHeJ_T0068547.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140378755 140492195 + MGP_C3HHeJ_P0068547 Ubr4 protein_coding protein_coding MGP_C3HHeJ_T0068548.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140378755 140492253 + MGP_C3HHeJ_P0068548 Ubr4 protein_coding protein_coding MGP_C3HHeJ_T0068549.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140378765 140395681 + Ubr4 protein_coding processed_transcript MGP_C3HHeJ_T0068550.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140412503 140451989 + MGP_C3HHeJ_P0068550 Ubr4 protein_coding protein_coding MGP_C3HHeJ_T0068551.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140414258 140415073 + Ubr4 protein_coding retained_intron MGP_C3HHeJ_T0068552.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140434037 140437193 + MGP_C3HHeJ_P0068552 Ubr4 protein_coding protein_coding MGP_C3HHeJ_T0068553.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140463283 140464000 + Ubr4 protein_coding retained_intron MGP_C3HHeJ_T0068554.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140477107 140481277 + Ubr4 protein_coding retained_intron MGP_C3HHeJ_T0068555.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140479410 140483066 + Ubr4 protein_coding processed_transcript MGP_C3HHeJ_T0068556.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140479593 140481520 + Ubr4 protein_coding retained_intron MGP_C3HHeJ_T0068557.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140480846 140483148 + Ubr4 protein_coding retained_intron MGP_C3HHeJ_T0065233.1 MGP_C3HHeJ_G0027951.1 mouse_genomes_project 4 44348837 44426584 + MGP_C3HHeJ_P0065233 Tmod1 protein_coding protein_coding MGP_C3HHeJ_T0065234.1 MGP_C3HHeJ_G0027951.1 mouse_genomes_project 4 44349111 44400751 + MGP_C3HHeJ_P0065234 Tmod1 protein_coding protein_coding MGP_C3HHeJ_T0065235.1 MGP_C3HHeJ_G0027951.1 mouse_genomes_project 4 44387251 44409602 + Tmod1 protein_coding processed_transcript MGP_C3HHeJ_T0065236.1 MGP_C3HHeJ_G0027951.1 mouse_genomes_project 4 44392807 44400735 + Tmod1 protein_coding processed_transcript MGP_C3HHeJ_T0065237.1 MGP_C3HHeJ_G0027951.1 mouse_genomes_project 4 44410136 44425037 + Tmod1 protein_coding processed_transcript MGP_C3HHeJ_T0069588.1 MGP_C3HHeJ_G0028951.1 mouse_genomes_project 4 158572229 158574079 + MGP_C3HHeJ_P0069588 AW011738 protein_coding protein_coding MGP_C3HHeJ_T0099328.1 MGP_C3HHeJ_G0037522.1 mouse_genomes_project 4 13791757 13791863 - Gm23975 snRNA snRNA MGP_C3HHeJ_T0014268.1 MGP_C3HHeJ_G0012372.1 mouse_genomes_project 4 13633506 13634165 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064409.1 MGP_C3HHeJ_G0027766.1 mouse_genomes_project 4 11499124 11664838 - MGP_C3HHeJ_P0064409 Lrrc69 protein_coding protein_coding MGP_C3HHeJ_T0064410.1 MGP_C3HHeJ_G0027766.1 mouse_genomes_project 4 11530727 11624451 - Lrrc69 protein_coding processed_transcript MGP_C3HHeJ_T0064411.1 MGP_C3HHeJ_G0027766.1 mouse_genomes_project 4 11530727 11664830 - MGP_C3HHeJ_P0064411 Lrrc69 protein_coding protein_coding MGP_C3HHeJ_T0100624.1 MGP_C3HHeJ_G0038818.1 mouse_genomes_project 4 48799533 48799665 + Gm25485 snoRNA snoRNA MGP_C3HHeJ_T0069564.1 MGP_C3HHeJ_G0028947.1 mouse_genomes_project 4 158388344 158404742 - MGP_C3HHeJ_P0069564 Ttll10 protein_coding protein_coding MGP_C3HHeJ_T0069565.1 MGP_C3HHeJ_G0028947.1 mouse_genomes_project 4 158388417 158413375 - MGP_C3HHeJ_P0069565 Ttll10 protein_coding protein_coding MGP_C3HHeJ_T0069566.1 MGP_C3HHeJ_G0028947.1 mouse_genomes_project 4 158388804 158404389 - MGP_C3HHeJ_P0069566 Ttll10 protein_coding protein_coding MGP_C3HHeJ_T0069567.1 MGP_C3HHeJ_G0028947.1 mouse_genomes_project 4 158389309 158397052 - Ttll10 protein_coding processed_transcript MGP_C3HHeJ_T0069568.1 MGP_C3HHeJ_G0028947.1 mouse_genomes_project 4 158395394 158413302 - Ttll10 protein_coding retained_intron MGP_C3HHeJ_T0069569.1 MGP_C3HHeJ_G0028947.1 mouse_genomes_project 4 158396127 158397912 - Ttll10 protein_coding processed_transcript MGP_C3HHeJ_T0069570.1 MGP_C3HHeJ_G0028947.1 mouse_genomes_project 4 158396137 158401899 - Ttll10 protein_coding processed_transcript MGP_C3HHeJ_T0069571.1 MGP_C3HHeJ_G0028947.1 mouse_genomes_project 4 158400713 158401867 - Ttll10 protein_coding retained_intron MGP_C3HHeJ_T0010553.1 MGP_C3HHeJ_G0008686.1 mouse_genomes_project 4 137385203 137385262 - Gm22180 miRNA miRNA MGP_C3HHeJ_T0066672.1 MGP_C3HHeJ_G0028289.1 mouse_genomes_project 4 115273807 115317103 + MGP_C3HHeJ_P0066672 Stil protein_coding protein_coding MGP_C3HHeJ_T0066673.1 MGP_C3HHeJ_G0028289.1 mouse_genomes_project 4 115273830 115313297 + MGP_C3HHeJ_P0066673 Stil protein_coding protein_coding MGP_C3HHeJ_T0066674.1 MGP_C3HHeJ_G0028289.1 mouse_genomes_project 4 115273830 115317103 + MGP_C3HHeJ_P0066674 Stil protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066675.1 MGP_C3HHeJ_G0028289.1 mouse_genomes_project 4 115280405 115289911 + MGP_C3HHeJ_P0066675 Stil protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066676.1 MGP_C3HHeJ_G0028289.1 mouse_genomes_project 4 115283773 115295476 + Stil protein_coding processed_transcript MGP_C3HHeJ_T0066677.1 MGP_C3HHeJ_G0028289.1 mouse_genomes_project 4 115289845 115297039 + Stil protein_coding retained_intron MGP_C3HHeJ_T0014443.1 MGP_C3HHeJ_G0012547.1 mouse_genomes_project 4 75054713 75055609 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007823.1 MGP_C3HHeJ_G0006393.1 mouse_genomes_project 4 101273481 101321823 + 0610043K17Rik lincRNA lincRNA MGP_C3HHeJ_T0007825.1 MGP_C3HHeJ_G0006393.1 mouse_genomes_project 4 101287047 101313760 + 0610043K17Rik lincRNA lincRNA MGP_C3HHeJ_T0004525.1 MGP_C3HHeJ_G0003921.1 mouse_genomes_project 4 151799103 151800134 + antisense antisense MGP_C3HHeJ_T0004526.1 MGP_C3HHeJ_G0003921.1 mouse_genomes_project 4 151799103 151800009 + antisense antisense MGP_C3HHeJ_T0007882.1 MGP_C3HHeJ_G0006434.1 mouse_genomes_project 4 130194795 130197725 + E330017L17Rik lincRNA lincRNA MGP_C3HHeJ_T0007883.1 MGP_C3HHeJ_G0006434.1 mouse_genomes_project 4 130194805 130197590 + E330017L17Rik lincRNA lincRNA MGP_C3HHeJ_T0007884.1 MGP_C3HHeJ_G0006434.1 mouse_genomes_project 4 130194837 130197344 + E330017L17Rik lincRNA lincRNA MGP_C3HHeJ_T0007885.1 MGP_C3HHeJ_G0006434.1 mouse_genomes_project 4 130195012 130207979 + E330017L17Rik lincRNA lincRNA MGP_C3HHeJ_T0067759.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130339958 130393586 + MGP_C3HHeJ_P0067759 Col16a1 protein_coding protein_coding MGP_C3HHeJ_T0067760.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130339993 130341835 + MGP_C3HHeJ_P0067760 Col16a1 protein_coding protein_coding MGP_C3HHeJ_T0067761.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130340003 130386915 + Col16a1 protein_coding processed_transcript MGP_C3HHeJ_T0067762.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130340027 130373824 + Col16a1 protein_coding processed_transcript MGP_C3HHeJ_T0067763.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130340063 130343964 + MGP_C3HHeJ_P0067763 Col16a1 protein_coding protein_coding MGP_C3HHeJ_T0067764.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130340080 130393592 + MGP_C3HHeJ_P0067764 Col16a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067765.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130347091 130350652 + MGP_C3HHeJ_P0067765 Col16a1 protein_coding protein_coding MGP_C3HHeJ_T0067766.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130347136 130348098 + Col16a1 protein_coding retained_intron MGP_C3HHeJ_T0067767.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130348060 130393586 + MGP_C3HHeJ_P0067767 Col16a1 protein_coding protein_coding MGP_C3HHeJ_T0067768.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130361765 130374922 + Col16a1 protein_coding processed_transcript MGP_C3HHeJ_T0067769.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130370520 130373631 + Col16a1 protein_coding processed_transcript MGP_C3HHeJ_T0067770.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130372445 130374043 + Col16a1 protein_coding processed_transcript MGP_C3HHeJ_T0067771.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130391912 130393585 + Col16a1 protein_coding processed_transcript MGP_C3HHeJ_T0100606.1 MGP_C3HHeJ_G0038800.1 mouse_genomes_project 4 12803667 12803735 - Gm26148 snoRNA snoRNA MGP_C3HHeJ_T0017893.1 MGP_C3HHeJ_G0015348.1 mouse_genomes_project 4 157940746 157958141 - Gm16023 processed_transcript processed_transcript MGP_C3HHeJ_T0017894.1 MGP_C3HHeJ_G0015348.1 mouse_genomes_project 4 157948408 157957866 - Gm16023 processed_transcript processed_transcript MGP_C3HHeJ_T0014354.1 MGP_C3HHeJ_G0012458.1 mouse_genomes_project 4 38018047 38018465 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068117.1 MGP_C3HHeJ_G0028611.1 mouse_genomes_project 4 134769309 134782496 - MGP_C3HHeJ_P0068117 protein_coding protein_coding MGP_C3HHeJ_T0068887.1 MGP_C3HHeJ_G0028823.1 mouse_genomes_project 4 150106853 150112652 + MGP_C3HHeJ_P0068887 Fbxo2 protein_coding protein_coding MGP_C3HHeJ_T0014260.1 MGP_C3HHeJ_G0012364.1 mouse_genomes_project 4 12634020 12634858 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067467.1 MGP_C3HHeJ_G0028478.1 mouse_genomes_project 4 126575598 126620381 - MGP_C3HHeJ_P0067467 Ago4 protein_coding protein_coding MGP_C3HHeJ_T0067468.1 MGP_C3HHeJ_G0028478.1 mouse_genomes_project 4 126601189 126602627 - Ago4 protein_coding processed_transcript MGP_C3HHeJ_T0004391.1 MGP_C3HHeJ_G0003822.1 mouse_genomes_project 4 71286568 71287250 + Gm11250 antisense antisense MGP_C3HHeJ_T0065674.1 MGP_C3HHeJ_G0028072.1 mouse_genomes_project 4 64112280 64346910 + MGP_C3HHeJ_P0065674 Pappa protein_coding protein_coding MGP_C3HHeJ_T0007917.1 MGP_C3HHeJ_G0006454.1 mouse_genomes_project 4 137927525 137928527 - Gm13001 lincRNA lincRNA MGP_C3HHeJ_T0065938.1 MGP_C3HHeJ_G0028131.1 mouse_genomes_project 4 88515258 88515756 - MGP_C3HHeJ_P0065938 4930553M12Rik protein_coding protein_coding MGP_C3HHeJ_T0014521.1 MGP_C3HHeJ_G0012625.1 mouse_genomes_project 4 105632537 105633138 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065995.1 MGP_C3HHeJ_G0028150.1 mouse_genomes_project 4 94793354 94796542 - MGP_C3HHeJ_P0065995 Jun protein_coding protein_coding MGP_C3HHeJ_T0065420.1 MGP_C3HHeJ_G0028005.1 mouse_genomes_project 4 53496366 53565303 + MGP_C3HHeJ_P0065420 protein_coding protein_coding MGP_C3HHeJ_T0065421.1 MGP_C3HHeJ_G0028005.1 mouse_genomes_project 4 53564408 53640798 + MGP_C3HHeJ_P0065421 protein_coding unknown_likely_coding MGP_C3HHeJ_T0065422.1 MGP_C3HHeJ_G0028005.1 mouse_genomes_project 4 53568369 53638582 + MGP_C3HHeJ_P0065422 protein_coding protein_coding MGP_C3HHeJ_T0065423.1 MGP_C3HHeJ_G0028005.1 mouse_genomes_project 4 53568483 53638554 + MGP_C3HHeJ_P0065423 protein_coding protein_coding MGP_C3HHeJ_T0014227.1 MGP_C3HHeJ_G0012331.1 mouse_genomes_project 4 2247643 2248115 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001382.1 MGP_C3HHeJ_G0001313.1 mouse_genomes_project 4 106353731 106354771 - TEC TEC MGP_C3HHeJ_T0010484.1 MGP_C3HHeJ_G0008617.1 mouse_genomes_project 4 6404427 6404499 + Gm25677 miRNA miRNA MGP_C3HHeJ_T0100673.1 MGP_C3HHeJ_G0038867.1 mouse_genomes_project 4 131190036 131190166 - Gm22660 snoRNA snoRNA MGP_C3HHeJ_T0068238.1 MGP_C3HHeJ_G0028640.1 mouse_genomes_project 4 136104592 136126003 - MGP_C3HHeJ_P0068238 Rcan3 protein_coding protein_coding MGP_C3HHeJ_T0068239.1 MGP_C3HHeJ_G0028640.1 mouse_genomes_project 4 136104592 136117572 - MGP_C3HHeJ_P0068239 Rcan3 protein_coding protein_coding MGP_C3HHeJ_T0068240.1 MGP_C3HHeJ_G0028640.1 mouse_genomes_project 4 136110730 136125973 - MGP_C3HHeJ_P0068240 Rcan3 protein_coding protein_coding MGP_C3HHeJ_T0069251.1 MGP_C3HHeJ_G0028889.1 mouse_genomes_project 4 156245223 156278434 + MGP_C3HHeJ_P0069251 Cep104 protein_coding protein_coding MGP_C3HHeJ_T0069252.1 MGP_C3HHeJ_G0028889.1 mouse_genomes_project 4 156258177 156278434 + MGP_C3HHeJ_P0069252 Cep104 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069253.1 MGP_C3HHeJ_G0028889.1 mouse_genomes_project 4 156258917 156259788 + Cep104 protein_coding retained_intron MGP_C3HHeJ_T0068775.1 MGP_C3HHeJ_G0028783.1 mouse_genomes_project 4 145606952 145613256 - MGP_C3HHeJ_P0068775 protein_coding protein_coding MGP_C3HHeJ_T0068776.1 MGP_C3HHeJ_G0028783.1 mouse_genomes_project 4 145609430 145613690 - MGP_C3HHeJ_P0068776 protein_coding protein_coding MGP_C3HHeJ_T0068777.1 MGP_C3HHeJ_G0028783.1 mouse_genomes_project 4 145609598 145613256 - MGP_C3HHeJ_P0068777 protein_coding protein_coding MGP_C3HHeJ_T0068778.1 MGP_C3HHeJ_G0028783.1 mouse_genomes_project 4 145609763 145613283 - MGP_C3HHeJ_P0068778 protein_coding protein_coding MGP_C3HHeJ_T0068779.1 MGP_C3HHeJ_G0028783.1 mouse_genomes_project 4 145609840 145613638 - MGP_C3HHeJ_P0068779 protein_coding protein_coding MGP_C3HHeJ_T0010560.1 MGP_C3HHeJ_G0008693.1 mouse_genomes_project 4 141019632 141019727 - Mir2139 miRNA miRNA MGP_C3HHeJ_T0007792.1 MGP_C3HHeJ_G0006367.1 mouse_genomes_project 4 81369044 81395987 - Gm11264 lincRNA lincRNA MGP_C3HHeJ_T0007811.1 MGP_C3HHeJ_G0006382.1 mouse_genomes_project 4 93833936 94171542 - lincRNA lincRNA MGP_C3HHeJ_T0067856.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317450 132334367 - MGP_C3HHeJ_P0067856 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067857.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317452 132334404 - Epb41 protein_coding processed_transcript MGP_C3HHeJ_T0067858.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317452 132478051 - Epb41 protein_coding processed_transcript MGP_C3HHeJ_T0067859.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317452 132478022 - MGP_C3HHeJ_P0067859 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067860.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317452 132366800 - MGP_C3HHeJ_P0067860 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067861.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317452 132366831 - MGP_C3HHeJ_P0067861 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067862.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317452 132407526 - MGP_C3HHeJ_P0067862 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067863.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317452 132403902 - MGP_C3HHeJ_P0067863 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067864.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317452 132407525 - MGP_C3HHeJ_P0067864 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067865.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317452 132478022 - MGP_C3HHeJ_P0067865 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067866.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317468 132474067 - MGP_C3HHeJ_P0067866 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067867.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317468 132451226 - MGP_C3HHeJ_P0067867 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067868.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317468 132451226 - MGP_C3HHeJ_P0067868 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067869.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132318168 132474067 - Epb41 protein_coding processed_transcript MGP_C3HHeJ_T0067870.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132320549 132407519 - MGP_C3HHeJ_P0067870 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067871.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132356574 132451239 - MGP_C3HHeJ_P0067871 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067872.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132388501 132400412 - Epb41 protein_coding processed_transcript MGP_C3HHeJ_T0067873.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132403883 132477994 - Epb41 protein_coding processed_transcript MGP_C3HHeJ_T0001385.1 MGP_C3HHeJ_G0001316.1 mouse_genomes_project 4 124265882 124267160 - TEC TEC MGP_C3HHeJ_T0064795.1 MGP_C3HHeJ_G0027866.1 mouse_genomes_project 4 39688141 39699000 + MGP_C3HHeJ_P0064795 protein_coding protein_coding MGP_C3HHeJ_T0064797.1 MGP_C3HHeJ_G0027866.1 mouse_genomes_project 4 39693120 39695663 + protein_coding retained_intron MGP_C3HHeJ_T0064798.1 MGP_C3HHeJ_G0027866.1 mouse_genomes_project 4 39693120 39697588 + protein_coding retained_intron MGP_C3HHeJ_T0064800.1 MGP_C3HHeJ_G0027866.1 mouse_genomes_project 4 39697326 39699000 + protein_coding retained_intron MGP_C3HHeJ_T0064803.1 MGP_C3HHeJ_G0027866.1 mouse_genomes_project 4 39697975 39699000 + protein_coding retained_intron MGP_C3HHeJ_T0102002.1 MGP_C3HHeJ_G0039967.1 mouse_genomes_project 4 101806596 101806869 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0067808.1 MGP_C3HHeJ_G0028549.1 mouse_genomes_project 4 130988876 131110665 + MGP_C3HHeJ_P0067808 Pum1 protein_coding protein_coding MGP_C3HHeJ_T0067809.1 MGP_C3HHeJ_G0028549.1 mouse_genomes_project 4 130988914 131110663 + MGP_C3HHeJ_P0067809 Pum1 protein_coding protein_coding MGP_C3HHeJ_T0067810.1 MGP_C3HHeJ_G0028549.1 mouse_genomes_project 4 130988914 131110663 + MGP_C3HHeJ_P0067810 Pum1 protein_coding protein_coding MGP_C3HHeJ_T0067811.1 MGP_C3HHeJ_G0028549.1 mouse_genomes_project 4 130988921 131047285 + Pum1 protein_coding retained_intron MGP_C3HHeJ_T0067812.1 MGP_C3HHeJ_G0028549.1 mouse_genomes_project 4 130988922 131075402 + MGP_C3HHeJ_P0067812 Pum1 protein_coding protein_coding MGP_C3HHeJ_T0067813.1 MGP_C3HHeJ_G0028549.1 mouse_genomes_project 4 130988941 131109366 + MGP_C3HHeJ_P0067813 Pum1 protein_coding protein_coding MGP_C3HHeJ_T0067814.1 MGP_C3HHeJ_G0028549.1 mouse_genomes_project 4 130988961 131109354 + MGP_C3HHeJ_P0067814 Pum1 protein_coding protein_coding MGP_C3HHeJ_T0067675.1 MGP_C3HHeJ_G0028526.1 mouse_genomes_project 4 129844757 129854837 - MGP_C3HHeJ_P0067675 Eif3i protein_coding protein_coding MGP_C3HHeJ_T0067676.1 MGP_C3HHeJ_G0028526.1 mouse_genomes_project 4 129846128 129849976 - Eif3i protein_coding retained_intron MGP_C3HHeJ_T0067677.1 MGP_C3HHeJ_G0028526.1 mouse_genomes_project 4 129846325 129854788 - MGP_C3HHeJ_P0067677 Eif3i protein_coding protein_coding MGP_C3HHeJ_T0067678.1 MGP_C3HHeJ_G0028526.1 mouse_genomes_project 4 129849334 129854788 - Eif3i protein_coding processed_transcript MGP_C3HHeJ_T0067679.1 MGP_C3HHeJ_G0028526.1 mouse_genomes_project 4 129852389 129854805 - Eif3i protein_coding retained_intron MGP_C3HHeJ_T0099361.1 MGP_C3HHeJ_G0037555.1 mouse_genomes_project 4 86015380 86015454 + Gm26017 snRNA snRNA MGP_C3HHeJ_T0065629.1 MGP_C3HHeJ_G0028061.1 mouse_genomes_project 4 62080425 62086853 - Kif12 protein_coding processed_transcript MGP_C3HHeJ_T0065630.1 MGP_C3HHeJ_G0028061.1 mouse_genomes_project 4 62080428 62086938 - MGP_C3HHeJ_P0065630 Kif12 protein_coding protein_coding MGP_C3HHeJ_T0065631.1 MGP_C3HHeJ_G0028061.1 mouse_genomes_project 4 62082268 62085589 - Kif12 protein_coding processed_transcript MGP_C3HHeJ_T0065632.1 MGP_C3HHeJ_G0028061.1 mouse_genomes_project 4 62082520 62085981 - Kif12 protein_coding processed_transcript MGP_C3HHeJ_T0065633.1 MGP_C3HHeJ_G0028061.1 mouse_genomes_project 4 62084198 62086537 - Kif12 protein_coding processed_transcript MGP_C3HHeJ_T0014475.1 MGP_C3HHeJ_G0012579.1 mouse_genomes_project 4 90058496 90060201 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066247.1 MGP_C3HHeJ_G0028205.1 mouse_genomes_project 4 103621902 104197234 + Dab1 protein_coding processed_transcript MGP_C3HHeJ_T0066248.1 MGP_C3HHeJ_G0028205.1 mouse_genomes_project 4 103622208 104713254 + MGP_C3HHeJ_P0066248 Dab1 protein_coding protein_coding MGP_C3HHeJ_T0066249.1 MGP_C3HHeJ_G0028205.1 mouse_genomes_project 4 104391741 104712368 + MGP_C3HHeJ_P0066249 Dab1 protein_coding protein_coding MGP_C3HHeJ_T0066250.1 MGP_C3HHeJ_G0028205.1 mouse_genomes_project 4 104392217 104777786 + MGP_C3HHeJ_P0066250 Dab1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066251.1 MGP_C3HHeJ_G0028205.1 mouse_genomes_project 4 104392217 104780833 + MGP_C3HHeJ_P0066251 Dab1 protein_coding protein_coding MGP_C3HHeJ_T0066252.1 MGP_C3HHeJ_G0028205.1 mouse_genomes_project 4 104538399 104713254 + MGP_C3HHeJ_P0066252 Dab1 protein_coding protein_coding MGP_C3HHeJ_T0066253.1 MGP_C3HHeJ_G0028205.1 mouse_genomes_project 4 104621437 104711664 + Dab1 protein_coding processed_transcript MGP_C3HHeJ_T0066254.1 MGP_C3HHeJ_G0028205.1 mouse_genomes_project 4 104635509 104748850 + MGP_C3HHeJ_P0066254 Dab1 protein_coding protein_coding MGP_C3HHeJ_T0068705.1 MGP_C3HHeJ_G0028752.1 mouse_genomes_project 4 142843329 142892382 - MGP_C3HHeJ_P0068705 protein_coding protein_coding MGP_C3HHeJ_T0068706.1 MGP_C3HHeJ_G0028752.1 mouse_genomes_project 4 142849353 142892382 - MGP_C3HHeJ_P0068706 protein_coding protein_coding MGP_C3HHeJ_T0014572.1 MGP_C3HHeJ_G0012676.1 mouse_genomes_project 4 120065133 120065510 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010512.1 MGP_C3HHeJ_G0008645.1 mouse_genomes_project 4 66682436 66682513 + Gm44497 miRNA miRNA MGP_C3HHeJ_T0068498.1 MGP_C3HHeJ_G0028702.1 mouse_genomes_project 4 139834432 139837373 - MGP_C3HHeJ_P0068498 Gm13030 protein_coding protein_coding MGP_C3HHeJ_T0099398.1 MGP_C3HHeJ_G0037592.1 mouse_genomes_project 4 134344314 134344462 - Gm25270 snRNA snRNA MGP_C3HHeJ_T0068817.1 MGP_C3HHeJ_G0028805.1 mouse_genomes_project 4 148179277 148855527 + MGP_C3HHeJ_P0068817 protein_coding protein_coding MGP_C3HHeJ_T0064867.1 MGP_C3HHeJ_G0027887.1 mouse_genomes_project 4 40701481 40702582 + MGP_C3HHeJ_P0064867 protein_coding protein_coding MGP_C3HHeJ_T0066892.1 MGP_C3HHeJ_G0028337.1 mouse_genomes_project 4 117464065 117520015 + MGP_C3HHeJ_P0066892 Eif2b3 protein_coding protein_coding MGP_C3HHeJ_T0066893.1 MGP_C3HHeJ_G0028337.1 mouse_genomes_project 4 117464066 117533322 + MGP_C3HHeJ_P0066893 Eif2b3 protein_coding protein_coding MGP_C3HHeJ_T0066894.1 MGP_C3HHeJ_G0028337.1 mouse_genomes_project 4 117490588 117506115 + Eif2b3 protein_coding processed_transcript MGP_C3HHeJ_T0066895.1 MGP_C3HHeJ_G0028337.1 mouse_genomes_project 4 117513242 117521057 + Eif2b3 protein_coding processed_transcript MGP_C3HHeJ_T0066896.1 MGP_C3HHeJ_G0028337.1 mouse_genomes_project 4 117514234 117533887 + Eif2b3 protein_coding processed_transcript MGP_C3HHeJ_T0066897.1 MGP_C3HHeJ_G0028337.1 mouse_genomes_project 4 117528248 117533429 + Eif2b3 protein_coding processed_transcript MGP_C3HHeJ_T0007813.1 MGP_C3HHeJ_G0006384.1 mouse_genomes_project 4 94946858 94963143 + Gm12708 lincRNA lincRNA MGP_C3HHeJ_T0007814.1 MGP_C3HHeJ_G0006384.1 mouse_genomes_project 4 94946907 94959664 + Gm12708 lincRNA lincRNA MGP_C3HHeJ_T0068463.1 MGP_C3HHeJ_G0028691.1 mouse_genomes_project 4 139226623 139229636 - MGP_C3HHeJ_P0068463 Pink1 protein_coding protein_coding MGP_C3HHeJ_T0068464.1 MGP_C3HHeJ_G0028691.1 mouse_genomes_project 4 139226626 139240810 - MGP_C3HHeJ_P0068464 Pink1 protein_coding protein_coding MGP_C3HHeJ_T0068465.1 MGP_C3HHeJ_G0028691.1 mouse_genomes_project 4 139227136 139240743 - MGP_C3HHeJ_P0068465 Pink1 protein_coding protein_coding MGP_C3HHeJ_T0066518.1 MGP_C3HHeJ_G0028259.1 mouse_genomes_project 4 109024639 109025861 - MGP_C3HHeJ_P0066518 A730015C16Rik protein_coding protein_coding MGP_C3HHeJ_T0099397.1 MGP_C3HHeJ_G0037591.1 mouse_genomes_project 4 133414299 133414406 - Gm24913 snRNA snRNA MGP_C3HHeJ_T0007816.1 MGP_C3HHeJ_G0006386.1 mouse_genomes_project 4 99040356 99055071 - Gm12681 lincRNA lincRNA MGP_C3HHeJ_T0068310.1 MGP_C3HHeJ_G0028657.1 mouse_genomes_project 4 136888237 136890135 + MGP_C3HHeJ_P0068310 Id3 protein_coding protein_coding MGP_C3HHeJ_T0068311.1 MGP_C3HHeJ_G0028657.1 mouse_genomes_project 4 136888603 136889459 + Id3 protein_coding retained_intron MGP_C3HHeJ_T0068312.1 MGP_C3HHeJ_G0028657.1 mouse_genomes_project 4 136889716 136890498 + Id3 protein_coding processed_transcript MGP_C3HHeJ_T0014395.1 MGP_C3HHeJ_G0012499.1 mouse_genomes_project 4 53818193 53818653 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065928.1 MGP_C3HHeJ_G0028121.1 mouse_genomes_project 4 88289971 88290729 - MGP_C3HHeJ_P0065928 protein_coding protein_coding MGP_C3HHeJ_T0014648.1 MGP_C3HHeJ_G0012752.1 mouse_genomes_project 4 149819769 149820102 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064821.1 MGP_C3HHeJ_G0027873.1 mouse_genomes_project 4 39707544 39708515 - protein_coding processed_transcript MGP_C3HHeJ_T0064823.1 MGP_C3HHeJ_G0027873.1 mouse_genomes_project 4 39707574 39708641 - protein_coding processed_transcript MGP_C3HHeJ_T0064824.1 MGP_C3HHeJ_G0027873.1 mouse_genomes_project 4 39707589 39708619 - protein_coding processed_transcript MGP_C3HHeJ_T0064829.1 MGP_C3HHeJ_G0027873.1 mouse_genomes_project 4 39707611 39708668 - MGP_C3HHeJ_P0064829 protein_coding protein_coding MGP_C3HHeJ_T0064830.1 MGP_C3HHeJ_G0027873.1 mouse_genomes_project 4 39707615 39708524 - protein_coding processed_transcript MGP_C3HHeJ_T0066310.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 106998725 107129749 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066311.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 106999494 107148189 + MGP_C3HHeJ_P0066311 Ssbp3 protein_coding protein_coding MGP_C3HHeJ_T0066312.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 106999535 107137422 + MGP_C3HHeJ_P0066312 Ssbp3 protein_coding protein_coding MGP_C3HHeJ_T0066313.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 106999557 107147062 + MGP_C3HHeJ_P0066313 Ssbp3 protein_coding protein_coding MGP_C3HHeJ_T0066314.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 106999691 107146994 + MGP_C3HHeJ_P0066314 Ssbp3 protein_coding protein_coding MGP_C3HHeJ_T0066315.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 106999885 107109249 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066316.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107000322 107147011 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066317.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107011188 107129701 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066318.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107011228 107136928 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066319.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107036426 107147039 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066320.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107051035 107147187 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066321.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107062210 107129747 + MGP_C3HHeJ_P0066321 Ssbp3 protein_coding protein_coding MGP_C3HHeJ_T0066322.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107126863 107136043 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066323.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107129511 107130165 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066324.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107136881 107147015 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066325.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107136912 107139337 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066326.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107145449 107146946 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0101998.1 MGP_C3HHeJ_G0039963.1 mouse_genomes_project 4 95931837 95932016 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014246.1 MGP_C3HHeJ_G0012350.1 mouse_genomes_project 4 8202005 8202420 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064306.1 MGP_C3HHeJ_G0027743.1 mouse_genomes_project 4 6581529 6600642 + MGP_C3HHeJ_P0064306 Gdf6 protein_coding protein_coding MGP_C3HHeJ_T0067956.1 MGP_C3HHeJ_G0028577.1 mouse_genomes_project 4 133304769 133322097 - MGP_C3HHeJ_P0067956 Ppp1r8 protein_coding protein_coding MGP_C3HHeJ_T0067957.1 MGP_C3HHeJ_G0028577.1 mouse_genomes_project 4 133306608 133311872 - Ppp1r8 protein_coding processed_transcript MGP_C3HHeJ_T0067958.1 MGP_C3HHeJ_G0028577.1 mouse_genomes_project 4 133309329 133322052 - Ppp1r8 protein_coding processed_transcript MGP_C3HHeJ_T0067959.1 MGP_C3HHeJ_G0028577.1 mouse_genomes_project 4 133313588 133322062 - Ppp1r8 protein_coding processed_transcript MGP_C3HHeJ_T0065920.1 MGP_C3HHeJ_G0028117.1 mouse_genomes_project 4 88136826 88137576 - MGP_C3HHeJ_P0065920 Ifnb1 protein_coding protein_coding MGP_C3HHeJ_T0014491.1 MGP_C3HHeJ_G0012595.1 mouse_genomes_project 4 94243531 94244108 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068699.1 MGP_C3HHeJ_G0028751.1 mouse_genomes_project 4 142787276 142827351 - MGP_C3HHeJ_P0068699 Plekhm2 protein_coding protein_coding MGP_C3HHeJ_T0068700.1 MGP_C3HHeJ_G0028751.1 mouse_genomes_project 4 142787276 142828132 - MGP_C3HHeJ_P0068700 Plekhm2 protein_coding protein_coding MGP_C3HHeJ_T0068701.1 MGP_C3HHeJ_G0028751.1 mouse_genomes_project 4 142790562 142791750 - Plekhm2 protein_coding retained_intron MGP_C3HHeJ_T0068702.1 MGP_C3HHeJ_G0028751.1 mouse_genomes_project 4 142792659 142793260 - Plekhm2 protein_coding retained_intron MGP_C3HHeJ_T0068703.1 MGP_C3HHeJ_G0028751.1 mouse_genomes_project 4 142794694 142804460 - Plekhm2 protein_coding retained_intron MGP_C3HHeJ_T0068704.1 MGP_C3HHeJ_G0028751.1 mouse_genomes_project 4 142803581 142805030 - Plekhm2 protein_coding retained_intron MGP_C3HHeJ_T0066693.1 MGP_C3HHeJ_G0028295.1 mouse_genomes_project 4 115561895 115714879 + MGP_C3HHeJ_P0066693 protein_coding protein_coding MGP_C3HHeJ_T0004414.1 MGP_C3HHeJ_G0003835.1 mouse_genomes_project 4 99594022 99650678 - Gm12682 antisense antisense MGP_C3HHeJ_T0004510.1 MGP_C3HHeJ_G0003910.1 mouse_genomes_project 4 149930789 149933655 - Gm13054 antisense antisense MGP_C3HHeJ_T0065695.1 MGP_C3HHeJ_G0028079.1 mouse_genomes_project 4 70875073 70877396 - MGP_C3HHeJ_P0065695 Gm11232 protein_coding protein_coding MGP_C3HHeJ_T0064955.1 MGP_C3HHeJ_G0027900.1 mouse_genomes_project 4 41433466 41514544 + Atp8b5 protein_coding retained_intron MGP_C3HHeJ_T0064956.1 MGP_C3HHeJ_G0027900.1 mouse_genomes_project 4 41433477 41546006 + MGP_C3HHeJ_P0064956 Atp8b5 protein_coding protein_coding MGP_C3HHeJ_T0064957.1 MGP_C3HHeJ_G0027900.1 mouse_genomes_project 4 41433492 41546008 + MGP_C3HHeJ_P0064957 Atp8b5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064958.1 MGP_C3HHeJ_G0027900.1 mouse_genomes_project 4 41433492 41494106 + MGP_C3HHeJ_P0064958 Atp8b5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064959.1 MGP_C3HHeJ_G0027900.1 mouse_genomes_project 4 41433498 41495789 + MGP_C3HHeJ_P0064959 Atp8b5 protein_coding protein_coding MGP_C3HHeJ_T0004541.1 MGP_C3HHeJ_G0003934.1 mouse_genomes_project 4 157658736 157659519 + Gm27200 antisense antisense MGP_C3HHeJ_T0001396.1 MGP_C3HHeJ_G0001326.1 mouse_genomes_project 4 154090521 154090943 - TEC TEC MGP_C3HHeJ_T0067774.1 MGP_C3HHeJ_G0028540.1 mouse_genomes_project 4 130425306 130434252 - MGP_C3HHeJ_P0067774 Hcrtr1 protein_coding protein_coding MGP_C3HHeJ_T0067775.1 MGP_C3HHeJ_G0028540.1 mouse_genomes_project 4 130425306 130433641 - MGP_C3HHeJ_P0067775 Hcrtr1 protein_coding protein_coding MGP_C3HHeJ_T0067776.1 MGP_C3HHeJ_G0028540.1 mouse_genomes_project 4 130425306 130434449 - MGP_C3HHeJ_P0067776 Hcrtr1 protein_coding protein_coding MGP_C3HHeJ_T0067777.1 MGP_C3HHeJ_G0028540.1 mouse_genomes_project 4 130425930 130432718 - MGP_C3HHeJ_P0067777 Hcrtr1 protein_coding protein_coding MGP_C3HHeJ_T0065460.1 MGP_C3HHeJ_G0028016.1 mouse_genomes_project 4 55627058 55783096 - MGP_C3HHeJ_P0065460 protein_coding protein_coding MGP_C3HHeJ_T0065461.1 MGP_C3HHeJ_G0028016.1 mouse_genomes_project 4 55630760 55665688 - MGP_C3HHeJ_P0065461 protein_coding protein_coding MGP_C3HHeJ_T0065462.1 MGP_C3HHeJ_G0028016.1 mouse_genomes_project 4 55699605 55783096 - MGP_C3HHeJ_P0065462 protein_coding protein_coding MGP_C3HHeJ_T0065463.1 MGP_C3HHeJ_G0028016.1 mouse_genomes_project 4 55700911 55708450 - protein_coding processed_transcript MGP_C3HHeJ_T0065464.1 MGP_C3HHeJ_G0028016.1 mouse_genomes_project 4 55711195 55741768 - protein_coding processed_transcript MGP_C3HHeJ_T0065465.1 MGP_C3HHeJ_G0028016.1 mouse_genomes_project 4 55716713 55777989 - protein_coding processed_transcript MGP_C3HHeJ_T0065466.1 MGP_C3HHeJ_G0028016.1 mouse_genomes_project 4 55725843 55759330 - protein_coding processed_transcript MGP_C3HHeJ_T0065288.1 MGP_C3HHeJ_G0027965.1 mouse_genomes_project 4 45439020 45467829 + MGP_C3HHeJ_P0065288 Galnt12 protein_coding protein_coding MGP_C3HHeJ_T0069082.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153055488 154032861 - MGP_C3HHeJ_P0069082 Camta1 protein_coding protein_coding MGP_C3HHeJ_T0069100.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153207205 154033068 - MGP_C3HHeJ_P0069100 Camta1 protein_coding protein_coding MGP_C3HHeJ_T0069101.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153207206 154032938 - MGP_C3HHeJ_P0069101 Camta1 protein_coding protein_coding MGP_C3HHeJ_T0069102.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153207206 153227497 - MGP_C3HHeJ_P0069102 Camta1 protein_coding protein_coding MGP_C3HHeJ_T0069103.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153207494 153277940 - MGP_C3HHeJ_P0069103 Camta1 protein_coding protein_coding MGP_C3HHeJ_T0069104.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153207494 153257128 - MGP_C3HHeJ_P0069104 Camta1 protein_coding protein_coding MGP_C3HHeJ_T0069105.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153233765 153287987 - Camta1 protein_coding processed_transcript MGP_C3HHeJ_T0069106.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153233850 153256855 - MGP_C3HHeJ_P0069106 Camta1 protein_coding protein_coding MGP_C3HHeJ_T0069108.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153627801 154032842 - Camta1 protein_coding processed_transcript MGP_C3HHeJ_T0069109.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153957178 154032896 - Camta1 protein_coding processed_transcript MGP_C3HHeJ_T0069110.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153958842 154032930 - Camta1 protein_coding processed_transcript MGP_C3HHeJ_T0069111.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153959106 154032861 - MGP_C3HHeJ_P0069111 Camta1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0007738.1 MGP_C3HHeJ_G0006320.1 mouse_genomes_project 4 28040229 28185168 + 4930556G01Rik lincRNA lincRNA MGP_C3HHeJ_T0069071.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153034186 153052594 - MGP_C3HHeJ_P0069071 Park7 protein_coding protein_coding MGP_C3HHeJ_T0069072.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153034186 153048102 - MGP_C3HHeJ_P0069072 Park7 protein_coding protein_coding MGP_C3HHeJ_T0069073.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153034198 153047802 - MGP_C3HHeJ_P0069073 Park7 protein_coding protein_coding MGP_C3HHeJ_T0069074.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153034289 153046583 - MGP_C3HHeJ_P0069074 Park7 protein_coding protein_coding MGP_C3HHeJ_T0069075.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153034292 153047827 - MGP_C3HHeJ_P0069075 Park7 protein_coding protein_coding MGP_C3HHeJ_T0069076.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153034437 153038919 - Park7 protein_coding processed_transcript MGP_C3HHeJ_T0069077.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153038089 153047659 - MGP_C3HHeJ_P0069077 Park7 protein_coding protein_coding MGP_C3HHeJ_T0069078.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153040647 153048004 - Park7 protein_coding retained_intron MGP_C3HHeJ_T0069079.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153043289 153048044 - MGP_C3HHeJ_P0069079 Park7 protein_coding protein_coding MGP_C3HHeJ_T0069080.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153043413 153052363 - MGP_C3HHeJ_P0069080 Park7 protein_coding protein_coding MGP_C3HHeJ_T0066275.1 MGP_C3HHeJ_G0028216.1 mouse_genomes_project 4 106630650 106660365 + MGP_C3HHeJ_P0066275 Dhcr24 protein_coding protein_coding MGP_C3HHeJ_T0014618.1 MGP_C3HHeJ_G0012722.1 mouse_genomes_project 4 135956642 135956952 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067964.1 MGP_C3HHeJ_G0028580.1 mouse_genomes_project 4 133460556 133471585 + Fgr protein_coding processed_transcript MGP_C3HHeJ_T0067965.1 MGP_C3HHeJ_G0028580.1 mouse_genomes_project 4 133460563 133491116 + MGP_C3HHeJ_P0067965 Fgr protein_coding protein_coding MGP_C3HHeJ_T0067966.1 MGP_C3HHeJ_G0028580.1 mouse_genomes_project 4 133463577 133489973 + Fgr protein_coding processed_transcript MGP_C3HHeJ_T0067289.1 MGP_C3HHeJ_G0028437.1 mouse_genomes_project 4 123229744 123277657 - MGP_C3HHeJ_P0067289 Bmp8a protein_coding protein_coding MGP_C3HHeJ_T0067221.1 MGP_C3HHeJ_G0028415.1 mouse_genomes_project 4 121524645 121540226 - MGP_C3HHeJ_P0067221 Zfp69 protein_coding protein_coding MGP_C3HHeJ_T0067222.1 MGP_C3HHeJ_G0028415.1 mouse_genomes_project 4 121524861 121537957 - MGP_C3HHeJ_P0067222 Zfp69 protein_coding protein_coding MGP_C3HHeJ_T0067223.1 MGP_C3HHeJ_G0028415.1 mouse_genomes_project 4 121525814 121536374 - MGP_C3HHeJ_P0067223 Zfp69 protein_coding protein_coding MGP_C3HHeJ_T0067224.1 MGP_C3HHeJ_G0028415.1 mouse_genomes_project 4 121525815 121530459 - Zfp69 protein_coding retained_intron MGP_C3HHeJ_T0099375.1 MGP_C3HHeJ_G0037569.1 mouse_genomes_project 4 108695099 108695206 - Gm22345 snRNA snRNA MGP_C3HHeJ_T0069365.1 MGP_C3HHeJ_G0028910.1 mouse_genomes_project 4 157386744 157455441 + MGP_C3HHeJ_P0069365 Morn1 protein_coding protein_coding MGP_C3HHeJ_T0069366.1 MGP_C3HHeJ_G0028910.1 mouse_genomes_project 4 157386744 157416427 + MGP_C3HHeJ_P0069366 Morn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069367.1 MGP_C3HHeJ_G0028910.1 mouse_genomes_project 4 157386756 157395235 + MGP_C3HHeJ_P0069367 Morn1 protein_coding protein_coding MGP_C3HHeJ_T0069368.1 MGP_C3HHeJ_G0028910.1 mouse_genomes_project 4 157386770 157395516 + MGP_C3HHeJ_P0069368 Morn1 protein_coding protein_coding MGP_C3HHeJ_T0069369.1 MGP_C3HHeJ_G0028910.1 mouse_genomes_project 4 157386773 157398527 + MGP_C3HHeJ_P0069369 Morn1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069370.1 MGP_C3HHeJ_G0028910.1 mouse_genomes_project 4 157386781 157448891 + Morn1 protein_coding processed_transcript MGP_C3HHeJ_T0069371.1 MGP_C3HHeJ_G0028910.1 mouse_genomes_project 4 157386795 157448869 + Morn1 protein_coding processed_transcript MGP_C3HHeJ_T0069372.1 MGP_C3HHeJ_G0028910.1 mouse_genomes_project 4 157404324 157436067 + Morn1 protein_coding retained_intron MGP_C3HHeJ_T0069373.1 MGP_C3HHeJ_G0028910.1 mouse_genomes_project 4 157414935 157435631 + Morn1 protein_coding retained_intron MGP_C3HHeJ_T0007828.1 MGP_C3HHeJ_G0006396.1 mouse_genomes_project 4 103294802 103315194 + 4930456L15Rik lincRNA lincRNA MGP_C3HHeJ_T0100598.1 MGP_C3HHeJ_G0038792.1 mouse_genomes_project 4 495651 495719 - Gm24016 snoRNA snoRNA MGP_C3HHeJ_T0014429.1 MGP_C3HHeJ_G0012533.1 mouse_genomes_project 4 71672077 71672410 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100674.1 MGP_C3HHeJ_G0038868.1 mouse_genomes_project 4 131598666 131598800 + Gm25261 snoRNA snoRNA MGP_C3HHeJ_T0068640.1 MGP_C3HHeJ_G0028737.1 mouse_genomes_project 4 142266824 142325591 + MGP_C3HHeJ_P0068640 Fbxo42 protein_coding protein_coding MGP_C3HHeJ_T0068641.1 MGP_C3HHeJ_G0028737.1 mouse_genomes_project 4 142266833 142316795 + Fbxo42 protein_coding processed_transcript MGP_C3HHeJ_T0067078.1 MGP_C3HHeJ_G0028380.1 mouse_genomes_project 4 119401913 119403005 + MGP_C3HHeJ_P0067078 Olfr1330 protein_coding protein_coding MGP_C3HHeJ_T0102016.1 MGP_C3HHeJ_G0039981.1 mouse_genomes_project 4 122441192 122463665 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0068513.1 MGP_C3HHeJ_G0028709.1 mouse_genomes_project 4 140084027 140116573 - MGP_C3HHeJ_P0068513 Minos1 protein_coding protein_coding MGP_C3HHeJ_T0068514.1 MGP_C3HHeJ_G0028709.1 mouse_genomes_project 4 140086001 140088166 - Minos1 protein_coding processed_transcript MGP_C3HHeJ_T0068515.1 MGP_C3HHeJ_G0028709.1 mouse_genomes_project 4 140086033 140093478 - Minos1 protein_coding processed_transcript MGP_C3HHeJ_T0068516.1 MGP_C3HHeJ_G0028709.1 mouse_genomes_project 4 140086112 140116454 - Minos1 protein_coding processed_transcript MGP_C3HHeJ_T0004398.1 MGP_C3HHeJ_G0003829.1 mouse_genomes_project 4 88355337 88361774 - Gm13274 antisense antisense MGP_C3HHeJ_T0004399.1 MGP_C3HHeJ_G0003829.1 mouse_genomes_project 4 88355430 88361773 - Gm13274 antisense antisense MGP_C3HHeJ_T0014439.1 MGP_C3HHeJ_G0012543.1 mouse_genomes_project 4 74284371 74285752 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007915.1 MGP_C3HHeJ_G0006452.1 mouse_genomes_project 4 137098936 137100522 - Gm27022 lincRNA lincRNA MGP_C3HHeJ_T0069572.1 MGP_C3HHeJ_G0028948.1 mouse_genomes_project 4 158479750 158497020 + MGP_C3HHeJ_P0069572 9430015G10Rik protein_coding protein_coding MGP_C3HHeJ_T0069573.1 MGP_C3HHeJ_G0028948.1 mouse_genomes_project 4 158479753 158497020 + 9430015G10Rik protein_coding processed_transcript MGP_C3HHeJ_T0069574.1 MGP_C3HHeJ_G0028948.1 mouse_genomes_project 4 158479766 158497018 + MGP_C3HHeJ_P0069574 9430015G10Rik protein_coding protein_coding MGP_C3HHeJ_T0069575.1 MGP_C3HHeJ_G0028948.1 mouse_genomes_project 4 158479767 158495974 + MGP_C3HHeJ_P0069575 9430015G10Rik protein_coding protein_coding MGP_C3HHeJ_T0069576.1 MGP_C3HHeJ_G0028948.1 mouse_genomes_project 4 158479787 158491932 + 9430015G10Rik protein_coding processed_transcript MGP_C3HHeJ_T0069577.1 MGP_C3HHeJ_G0028948.1 mouse_genomes_project 4 158479798 158492166 + 9430015G10Rik protein_coding processed_transcript MGP_C3HHeJ_T0069578.1 MGP_C3HHeJ_G0028948.1 mouse_genomes_project 4 158479807 158486347 + 9430015G10Rik protein_coding processed_transcript MGP_C3HHeJ_T0069579.1 MGP_C3HHeJ_G0028948.1 mouse_genomes_project 4 158483662 158489271 + 9430015G10Rik protein_coding processed_transcript MGP_C3HHeJ_T0068299.1 MGP_C3HHeJ_G0028655.1 mouse_genomes_project 4 136733801 136753835 - MGP_C3HHeJ_P0068299 Tceb3 protein_coding protein_coding MGP_C3HHeJ_T0010538.1 MGP_C3HHeJ_G0008671.1 mouse_genomes_project 4 129506518 129506600 - Gm22994 miRNA miRNA MGP_C3HHeJ_T0014617.1 MGP_C3HHeJ_G0012721.1 mouse_genomes_project 4 135104060 135104813 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097903.1 MGP_C3HHeJ_G0036115.1 mouse_genomes_project 4 58317521 58317993 + pseudogene pseudogene MGP_C3HHeJ_T0068787.1 MGP_C3HHeJ_G0028791.1 mouse_genomes_project 4 145902431 145921644 - MGP_C3HHeJ_P0068787 Pramef12 protein_coding protein_coding MGP_C3HHeJ_T0068788.1 MGP_C3HHeJ_G0028791.1 mouse_genomes_project 4 145907175 145921597 - MGP_C3HHeJ_P0068788 Pramef12 protein_coding protein_coding MGP_C3HHeJ_T0068961.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151196522 151336279 - MGP_C3HHeJ_P0068961 Kif1b protein_coding protein_coding MGP_C3HHeJ_T0068962.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151198221 151206429 - Kif1b protein_coding retained_intron MGP_C3HHeJ_T0068963.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151199066 151221233 - MGP_C3HHeJ_P0068963 Kif1b protein_coding protein_coding MGP_C3HHeJ_T0068964.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151200439 151336093 - MGP_C3HHeJ_P0068964 Kif1b protein_coding protein_coding MGP_C3HHeJ_T0068965.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151230243 151234626 - Kif1b protein_coding retained_intron MGP_C3HHeJ_T0068966.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151230642 151238318 - Kif1b protein_coding retained_intron MGP_C3HHeJ_T0068967.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151239498 151248090 - Kif1b protein_coding retained_intron MGP_C3HHeJ_T0068968.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151258200 151336210 - MGP_C3HHeJ_P0068968 Kif1b protein_coding protein_coding MGP_C3HHeJ_T0068969.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151261470 151336123 - MGP_C3HHeJ_P0068969 Kif1b protein_coding unknown_likely_coding MGP_C3HHeJ_T0068970.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151270538 151273160 - Kif1b protein_coding retained_intron MGP_C3HHeJ_T0068971.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151289648 151336280 - Kif1b protein_coding retained_intron MGP_C3HHeJ_T0068972.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151318839 151336251 - Kif1b protein_coding retained_intron MGP_C3HHeJ_T0066142.1 MGP_C3HHeJ_G0028184.1 mouse_genomes_project 4 100979429 101059039 + MGP_C3HHeJ_P0066142 Raver2 protein_coding protein_coding MGP_C3HHeJ_T0066143.1 MGP_C3HHeJ_G0028184.1 mouse_genomes_project 4 100979429 101042027 + MGP_C3HHeJ_P0066143 Raver2 protein_coding protein_coding MGP_C3HHeJ_T0066144.1 MGP_C3HHeJ_G0028184.1 mouse_genomes_project 4 100979925 101014480 + Raver2 protein_coding processed_transcript MGP_C3HHeJ_T0067419.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126219971 126266916 - MGP_C3HHeJ_P0067419 Thrap3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067420.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126221019 126230942 - MGP_C3HHeJ_P0067420 Thrap3 protein_coding protein_coding MGP_C3HHeJ_T0067421.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126221033 126222955 - Thrap3 protein_coding processed_transcript MGP_C3HHeJ_T0067422.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126222526 126229009 - MGP_C3HHeJ_P0067422 Thrap3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067423.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126228324 126266849 - MGP_C3HHeJ_P0067423 Thrap3 protein_coding protein_coding MGP_C3HHeJ_T0067424.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126230860 126234022 - MGP_C3HHeJ_P0067424 Thrap3 protein_coding protein_coding MGP_C3HHeJ_T0067425.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126234269 126266872 - Thrap3 protein_coding retained_intron MGP_C3HHeJ_T0067426.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126234286 126235646 - Thrap3 protein_coding processed_transcript MGP_C3HHeJ_T0067427.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126236061 126256675 - MGP_C3HHeJ_P0067427 Thrap3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067428.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126239208 126265401 - MGP_C3HHeJ_P0067428 Thrap3 protein_coding protein_coding MGP_C3HHeJ_T0067429.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126239217 126266849 - MGP_C3HHeJ_P0067429 Thrap3 protein_coding protein_coding MGP_C3HHeJ_T0067430.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126248360 126266883 - Thrap3 protein_coding retained_intron MGP_C3HHeJ_T0067431.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126248541 126266919 - Thrap3 protein_coding retained_intron MGP_C3HHeJ_T0067432.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126248779 126266907 - MGP_C3HHeJ_P0067432 Thrap3 protein_coding protein_coding MGP_C3HHeJ_T0067433.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126248785 126266636 - MGP_C3HHeJ_P0067433 Thrap3 protein_coding protein_coding MGP_C3HHeJ_T0067434.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126248791 126266650 - MGP_C3HHeJ_P0067434 Thrap3 protein_coding protein_coding MGP_C3HHeJ_T0067435.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126256202 126266930 - Thrap3 protein_coding processed_transcript MGP_C3HHeJ_T0099326.1 MGP_C3HHeJ_G0037520.1 mouse_genomes_project 4 8051420 8051575 - Gm22940 snRNA snRNA MGP_C3HHeJ_T0004435.1 MGP_C3HHeJ_G0003850.1 mouse_genomes_project 4 115407267 115411169 + Cyp4x1os antisense antisense MGP_C3HHeJ_T0099358.1 MGP_C3HHeJ_G0037552.1 mouse_genomes_project 4 82665928 82666035 - Gm23412 snRNA snRNA MGP_C3HHeJ_T0100654.1 MGP_C3HHeJ_G0038848.1 mouse_genomes_project 4 103592648 103592777 - Gm25877 snoRNA snoRNA MGP_C3HHeJ_T0014432.1 MGP_C3HHeJ_G0012536.1 mouse_genomes_project 4 72526532 72527707 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010522.1 MGP_C3HHeJ_G0008655.1 mouse_genomes_project 4 99588134 99588223 + Gm23366 miRNA miRNA MGP_C3HHeJ_T0014664.1 MGP_C3HHeJ_G0012768.1 mouse_genomes_project 4 157828006 157828397 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014628.1 MGP_C3HHeJ_G0012732.1 mouse_genomes_project 4 137357980 137358469 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004375.1 MGP_C3HHeJ_G0003808.1 mouse_genomes_project 4 43227415 43235816 - Gm12679 antisense antisense MGP_C3HHeJ_T0067436.1 MGP_C3HHeJ_G0028471.1 mouse_genomes_project 4 126309897 126318847 - MGP_C3HHeJ_P0067436 Map7d1 protein_coding protein_coding MGP_C3HHeJ_T0067437.1 MGP_C3HHeJ_G0028471.1 mouse_genomes_project 4 126309897 126334945 - MGP_C3HHeJ_P0067437 Map7d1 protein_coding protein_coding MGP_C3HHeJ_T0067438.1 MGP_C3HHeJ_G0028471.1 mouse_genomes_project 4 126309897 126334951 - MGP_C3HHeJ_P0067438 Map7d1 protein_coding protein_coding MGP_C3HHeJ_T0067439.1 MGP_C3HHeJ_G0028471.1 mouse_genomes_project 4 126309897 126335011 - MGP_C3HHeJ_P0067439 Map7d1 protein_coding protein_coding MGP_C3HHeJ_T0067440.1 MGP_C3HHeJ_G0028471.1 mouse_genomes_project 4 126310693 126311279 - Map7d1 protein_coding retained_intron MGP_C3HHeJ_T0067441.1 MGP_C3HHeJ_G0028471.1 mouse_genomes_project 4 126311350 126312507 - Map7d1 protein_coding retained_intron MGP_C3HHeJ_T0064734.1 MGP_C3HHeJ_G0027851.1 mouse_genomes_project 4 38975723 38989519 - MGP_C3HHeJ_P0064734 Aqp7 protein_coding protein_coding MGP_C3HHeJ_T0064735.1 MGP_C3HHeJ_G0027851.1 mouse_genomes_project 4 38975723 38992210 - MGP_C3HHeJ_P0064735 Aqp7 protein_coding protein_coding MGP_C3HHeJ_T0064736.1 MGP_C3HHeJ_G0027851.1 mouse_genomes_project 4 38978174 38985052 - Aqp7 protein_coding processed_transcript MGP_C3HHeJ_T0064737.1 MGP_C3HHeJ_G0027851.1 mouse_genomes_project 4 38978416 38979607 - Aqp7 protein_coding processed_transcript MGP_C3HHeJ_T0101992.1 MGP_C3HHeJ_G0039957.1 mouse_genomes_project 4 88193458 88195146 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0066079.1 MGP_C3HHeJ_G0028168.1 mouse_genomes_project 4 98609622 98681244 - MGP_C3HHeJ_P0066079 Kank4 protein_coding protein_coding MGP_C3HHeJ_T0066080.1 MGP_C3HHeJ_G0028168.1 mouse_genomes_project 4 98611029 98627437 - Kank4 protein_coding processed_transcript MGP_C3HHeJ_T0065370.1 MGP_C3HHeJ_G0027987.1 mouse_genomes_project 4 48153259 48356293 - MGP_C3HHeJ_P0065370 Grin3a protein_coding protein_coding MGP_C3HHeJ_T0065371.1 MGP_C3HHeJ_G0027987.1 mouse_genomes_project 4 48153259 48356293 - MGP_C3HHeJ_P0065371 Grin3a protein_coding protein_coding MGP_C3HHeJ_T0065373.1 MGP_C3HHeJ_G0027987.1 mouse_genomes_project 4 48198002 48213064 - Grin3a protein_coding processed_transcript MGP_C3HHeJ_T0065374.1 MGP_C3HHeJ_G0027987.1 mouse_genomes_project 4 48270686 48356488 - Grin3a protein_coding processed_transcript MGP_C3HHeJ_T0010516.1 MGP_C3HHeJ_G0008649.1 mouse_genomes_project 4 87041409 87041465 + Gm23154 miRNA miRNA MGP_C3HHeJ_T0001376.1 MGP_C3HHeJ_G0001307.1 mouse_genomes_project 4 42913227 42914795 + TEC TEC MGP_C3HHeJ_T0007759.1 MGP_C3HHeJ_G0006340.1 mouse_genomes_project 4 51812134 51821007 - AI427809 lincRNA lincRNA MGP_C3HHeJ_T0007760.1 MGP_C3HHeJ_G0006340.1 mouse_genomes_project 4 51812671 51813326 - AI427809 lincRNA lincRNA MGP_C3HHeJ_T0007761.1 MGP_C3HHeJ_G0006340.1 mouse_genomes_project 4 51813233 51816267 - AI427809 lincRNA lincRNA MGP_C3HHeJ_T0007762.1 MGP_C3HHeJ_G0006340.1 mouse_genomes_project 4 51813510 51814608 - AI427809 lincRNA lincRNA MGP_C3HHeJ_T0066580.1 MGP_C3HHeJ_G0028267.1 mouse_genomes_project 4 109649985 109679048 - MGP_C3HHeJ_P0066580 Rnf11 protein_coding protein_coding MGP_C3HHeJ_T0066581.1 MGP_C3HHeJ_G0028267.1 mouse_genomes_project 4 109651786 109679355 - MGP_C3HHeJ_P0066581 Rnf11 protein_coding protein_coding MGP_C3HHeJ_T0066582.1 MGP_C3HHeJ_G0028267.1 mouse_genomes_project 4 109653171 109688958 - MGP_C3HHeJ_P0066582 Rnf11 protein_coding protein_coding MGP_C3HHeJ_T0004374.1 MGP_C3HHeJ_G0003807.1 mouse_genomes_project 4 43224605 43227936 + Gm12493 antisense antisense MGP_C3HHeJ_T0065723.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75091033 75617544 - MGP_C3HHeJ_P0065723 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065724.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75091034 75293156 - MGP_C3HHeJ_P0065724 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065725.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75099170 75765664 - MGP_C3HHeJ_P0065725 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065726.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75099322 75408949 - MGP_C3HHeJ_P0065726 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065727.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75099322 75408949 - MGP_C3HHeJ_P0065727 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065728.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75099322 75408949 - MGP_C3HHeJ_P0065728 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065729.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75099322 75408949 - MGP_C3HHeJ_P0065729 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065730.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75099322 75408949 - MGP_C3HHeJ_P0065730 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065731.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75099322 75508855 - MGP_C3HHeJ_P0065731 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065732.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75240174 75259834 - Ptprd protein_coding retained_intron MGP_C3HHeJ_T0065733.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75242298 75244444 - MGP_C3HHeJ_P0065733 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065734.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75257801 75265572 - MGP_C3HHeJ_P0065734 Ptprd protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065735.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75292431 75293417 - MGP_C3HHeJ_P0065735 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065736.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75299227 77478121 - Ptprd protein_coding processed_transcript MGP_C3HHeJ_T0065737.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75300203 75408949 - Ptprd protein_coding processed_transcript MGP_C3HHeJ_T0065738.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75762689 77478093 - Ptprd protein_coding processed_transcript MGP_C3HHeJ_T0065739.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75764915 77477965 - Ptprd protein_coding processed_transcript MGP_C3HHeJ_T0065740.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 76385731 77477965 - Ptprd protein_coding retained_intron MGP_C3HHeJ_T0065741.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 76552974 77478187 - Ptprd protein_coding processed_transcript MGP_C3HHeJ_T0065742.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 77161023 77478078 - Ptprd protein_coding processed_transcript MGP_C3HHeJ_T0065743.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 77168715 77478069 - Ptprd protein_coding retained_intron MGP_C3HHeJ_T0100617.1 MGP_C3HHeJ_G0038811.1 mouse_genomes_project 4 39168834 39168915 - Gm24837 snoRNA snoRNA MGP_C3HHeJ_T0065944.1 MGP_C3HHeJ_G0028135.1 mouse_genomes_project 4 89005070 89009816 - MGP_C3HHeJ_P0065944 Cdkn2b protein_coding protein_coding MGP_C3HHeJ_T0010532.1 MGP_C3HHeJ_G0008665.1 mouse_genomes_project 4 121354096 121354188 + Mir30f miRNA miRNA MGP_C3HHeJ_T0068695.1 MGP_C3HHeJ_G0028749.1 mouse_genomes_project 4 142772924 142779857 - MGP_C3HHeJ_P0068695 Tmem82 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068696.1 MGP_C3HHeJ_G0028749.1 mouse_genomes_project 4 142773784 142777761 - MGP_C3HHeJ_P0068696 Tmem82 protein_coding protein_coding MGP_C3HHeJ_T0068697.1 MGP_C3HHeJ_G0028749.1 mouse_genomes_project 4 142773788 142777504 - Tmem82 protein_coding retained_intron MGP_C3HHeJ_T0065566.1 MGP_C3HHeJ_G0028044.1 mouse_genomes_project 4 60967040 60971272 - MGP_C3HHeJ_P0065566 Mup3 protein_coding protein_coding MGP_C3HHeJ_T0068708.1 MGP_C3HHeJ_G0028754.1 mouse_genomes_project 4 142918404 142931892 + MGP_C3HHeJ_P0068708 Agmat protein_coding protein_coding MGP_C3HHeJ_T0065458.1 MGP_C3HHeJ_G0028015.1 mouse_genomes_project 4 55589997 55625479 - MGP_C3HHeJ_P0065458 Frrs1l protein_coding protein_coding MGP_C3HHeJ_T0065459.1 MGP_C3HHeJ_G0028015.1 mouse_genomes_project 4 55592606 55625224 - MGP_C3HHeJ_P0065459 Frrs1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067172.1 MGP_C3HHeJ_G0028402.1 mouse_genomes_project 4 120199433 120202286 - MGP_C3HHeJ_P0067172 Guca2b protein_coding protein_coding MGP_C3HHeJ_T0067173.1 MGP_C3HHeJ_G0028402.1 mouse_genomes_project 4 120199433 120202459 - MGP_C3HHeJ_P0067173 Guca2b protein_coding protein_coding MGP_C3HHeJ_T0069357.1 MGP_C3HHeJ_G0028908.1 mouse_genomes_project 4 157365129 157370547 + MGP_C3HHeJ_P0069357 Pex10 protein_coding protein_coding MGP_C3HHeJ_T0069358.1 MGP_C3HHeJ_G0028908.1 mouse_genomes_project 4 157365167 157366995 + Pex10 protein_coding processed_transcript MGP_C3HHeJ_T0069359.1 MGP_C3HHeJ_G0028908.1 mouse_genomes_project 4 157365170 157370295 + Pex10 protein_coding processed_transcript MGP_C3HHeJ_T0069360.1 MGP_C3HHeJ_G0028908.1 mouse_genomes_project 4 157365172 157366137 + Pex10 protein_coding processed_transcript MGP_C3HHeJ_T0069361.1 MGP_C3HHeJ_G0028908.1 mouse_genomes_project 4 157365172 157367230 + Pex10 protein_coding processed_transcript MGP_C3HHeJ_T0004479.1 MGP_C3HHeJ_G0003886.1 mouse_genomes_project 4 135800022 135800887 - Gm16224 antisense antisense MGP_C3HHeJ_T0068785.1 MGP_C3HHeJ_G0028789.1 mouse_genomes_project 4 145856687 145859180 + MGP_C3HHeJ_P0068785 Gm13119 protein_coding protein_coding MGP_C3HHeJ_T0004355.1 MGP_C3HHeJ_G0003791.1 mouse_genomes_project 4 17370197 17374309 + Gm11872 antisense antisense MGP_C3HHeJ_T0065529.1 MGP_C3HHeJ_G0028033.1 mouse_genomes_project 4 57709188 57716564 + MGP_C3HHeJ_P0065529 Gng10 protein_coding protein_coding MGP_C3HHeJ_T0065530.1 MGP_C3HHeJ_G0028033.1 mouse_genomes_project 4 57709872 57716564 + Gng10 protein_coding processed_transcript MGP_C3HHeJ_T0099383.1 MGP_C3HHeJ_G0037577.1 mouse_genomes_project 4 117684489 117684605 + Gm23287 snRNA snRNA MGP_C3HHeJ_T0014615.1 MGP_C3HHeJ_G0012719.1 mouse_genomes_project 4 134778385 134778706 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014546.1 MGP_C3HHeJ_G0012650.1 mouse_genomes_project 4 115685440 115685813 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067370.1 MGP_C3HHeJ_G0028457.1 mouse_genomes_project 4 125031175 125052823 + MGP_C3HHeJ_P0067370 Gnl2 protein_coding protein_coding MGP_C3HHeJ_T0067371.1 MGP_C3HHeJ_G0028457.1 mouse_genomes_project 4 125044486 125072896 + MGP_C3HHeJ_P0067371 Gnl2 protein_coding protein_coding MGP_C3HHeJ_T0067372.1 MGP_C3HHeJ_G0028457.1 mouse_genomes_project 4 125044552 125058328 + Gnl2 protein_coding processed_transcript MGP_C3HHeJ_T0067373.1 MGP_C3HHeJ_G0028457.1 mouse_genomes_project 4 125058041 125060004 + Gnl2 protein_coding processed_transcript MGP_C3HHeJ_T0067374.1 MGP_C3HHeJ_G0028457.1 mouse_genomes_project 4 125060315 125063348 + Gnl2 protein_coding processed_transcript MGP_C3HHeJ_T0067375.1 MGP_C3HHeJ_G0028457.1 mouse_genomes_project 4 125070670 125072900 + Gnl2 protein_coding processed_transcript MGP_C3HHeJ_T0067042.1 MGP_C3HHeJ_G0028363.1 mouse_genomes_project 4 118933658 118938177 + MGP_C3HHeJ_P0067042 Elovl1 protein_coding protein_coding MGP_C3HHeJ_T0067043.1 MGP_C3HHeJ_G0028363.1 mouse_genomes_project 4 118933683 118934384 + Elovl1 protein_coding processed_transcript MGP_C3HHeJ_T0067044.1 MGP_C3HHeJ_G0028363.1 mouse_genomes_project 4 118933727 118937504 + Elovl1 protein_coding processed_transcript MGP_C3HHeJ_T0067045.1 MGP_C3HHeJ_G0028363.1 mouse_genomes_project 4 118933761 118936628 + Elovl1 protein_coding processed_transcript MGP_C3HHeJ_T0007784.1 MGP_C3HHeJ_G0006359.1 mouse_genomes_project 4 63025949 63034212 + Gm11216 lincRNA lincRNA MGP_C3HHeJ_T0098251.1 MGP_C3HHeJ_G0036463.1 mouse_genomes_project 4 41672356 41672627 - Rmrp ribozyme ribozyme MGP_C3HHeJ_T0066918.1 MGP_C3HHeJ_G0028342.1 mouse_genomes_project 4 117610282 117612698 - MGP_C3HHeJ_P0066918 Rps8 protein_coding protein_coding MGP_C3HHeJ_T0066919.1 MGP_C3HHeJ_G0028342.1 mouse_genomes_project 4 117610289 117610952 - Rps8 protein_coding retained_intron MGP_C3HHeJ_T0066920.1 MGP_C3HHeJ_G0028342.1 mouse_genomes_project 4 117610827 117611636 - Rps8 protein_coding retained_intron MGP_C3HHeJ_T0066921.1 MGP_C3HHeJ_G0028342.1 mouse_genomes_project 4 117610846 117612539 - Rps8 protein_coding retained_intron MGP_C3HHeJ_T0066922.1 MGP_C3HHeJ_G0028342.1 mouse_genomes_project 4 117610964 117612524 - Rps8 protein_coding retained_intron MGP_C3HHeJ_T0066923.1 MGP_C3HHeJ_G0028342.1 mouse_genomes_project 4 117611140 117612527 - Rps8 protein_coding retained_intron MGP_C3HHeJ_T0064226.1 MGP_C3HHeJ_G0027728.1 mouse_genomes_project 4 681929 696109 - MGP_C3HHeJ_P0064226 Sdr16c5 protein_coding protein_coding MGP_C3HHeJ_T0064227.1 MGP_C3HHeJ_G0027728.1 mouse_genomes_project 4 688786 693067 - Sdr16c5 protein_coding processed_transcript MGP_C3HHeJ_T0001391.1 MGP_C3HHeJ_G0001322.1 mouse_genomes_project 4 142359537 142360812 - TEC TEC MGP_C3HHeJ_T0001392.1 MGP_C3HHeJ_G0001322.1 mouse_genomes_project 4 142359543 142360812 - TEC TEC MGP_C3HHeJ_T0068503.1 MGP_C3HHeJ_G0028705.1 mouse_genomes_project 4 139940906 139942155 + MGP_C3HHeJ_P0068503 Rnf186 protein_coding protein_coding MGP_C3HHeJ_T0068078.1 MGP_C3HHeJ_G0028605.1 mouse_genomes_project 4 134621888 134627225 + MGP_C3HHeJ_P0068078 Zfp683 protein_coding protein_coding MGP_C3HHeJ_T0067329.1 MGP_C3HHeJ_G0028446.1 mouse_genomes_project 4 124678412 124696660 - MGP_C3HHeJ_P0067329 Utp11l protein_coding protein_coding MGP_C3HHeJ_T0067330.1 MGP_C3HHeJ_G0028446.1 mouse_genomes_project 4 124679037 124696594 - Utp11l protein_coding processed_transcript MGP_C3HHeJ_T0007833.1 MGP_C3HHeJ_G0006400.1 mouse_genomes_project 4 106561468 106568988 - Tmem61 lincRNA lincRNA MGP_C3HHeJ_T0007834.1 MGP_C3HHeJ_G0006400.1 mouse_genomes_project 4 106561700 106565759 - Tmem61 lincRNA lincRNA MGP_C3HHeJ_T0067701.1 MGP_C3HHeJ_G0028528.1 mouse_genomes_project 4 129862172 129868077 - MGP_C3HHeJ_P0067701 Dcdc2b protein_coding protein_coding MGP_C3HHeJ_T0067702.1 MGP_C3HHeJ_G0028528.1 mouse_genomes_project 4 129862370 129863090 - Dcdc2b protein_coding retained_intron MGP_C3HHeJ_T0067703.1 MGP_C3HHeJ_G0028528.1 mouse_genomes_project 4 129862589 129868074 - MGP_C3HHeJ_P0067703 Dcdc2b protein_coding protein_coding MGP_C3HHeJ_T0065605.1 MGP_C3HHeJ_G0028056.1 mouse_genomes_project 4 61428741 61431162 - MGP_C3HHeJ_P0065605 Pole3 protein_coding protein_coding MGP_C3HHeJ_T0065606.1 MGP_C3HHeJ_G0028056.1 mouse_genomes_project 4 61430428 61431132 - Pole3 protein_coding retained_intron MGP_C3HHeJ_T0064755.1 MGP_C3HHeJ_G0027856.1 mouse_genomes_project 4 39256559 39280115 - MGP_C3HHeJ_P0064755 Dcaf12 protein_coding protein_coding MGP_C3HHeJ_T0102020.1 MGP_C3HHeJ_G0039985.1 mouse_genomes_project 4 122652758 122670862 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0066646.1 MGP_C3HHeJ_G0028278.1 mouse_genomes_project 4 112174341 112184705 + MGP_C3HHeJ_P0066646 Skint7 protein_coding protein_coding MGP_C3HHeJ_T0066647.1 MGP_C3HHeJ_G0028278.1 mouse_genomes_project 4 112174345 112189784 + MGP_C3HHeJ_P0066647 Skint7 protein_coding protein_coding MGP_C3HHeJ_T0066648.1 MGP_C3HHeJ_G0028278.1 mouse_genomes_project 4 112174345 112182775 + MGP_C3HHeJ_P0066648 Skint7 protein_coding protein_coding MGP_C3HHeJ_T0066649.1 MGP_C3HHeJ_G0028278.1 mouse_genomes_project 4 112183616 112186150 + Skint7 protein_coding retained_intron MGP_C3HHeJ_T0065093.1 MGP_C3HHeJ_G0027924.1 mouse_genomes_project 4 42015273 42016230 - MGP_C3HHeJ_P0065093 Olfr156 protein_coding protein_coding MGP_C3HHeJ_T0014583.1 MGP_C3HHeJ_G0012687.1 mouse_genomes_project 4 122811717 122811965 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065024.1 MGP_C3HHeJ_G0027909.1 mouse_genomes_project 4 41694189 41704456 - Tpm2 protein_coding processed_transcript MGP_C3HHeJ_T0065025.1 MGP_C3HHeJ_G0027909.1 mouse_genomes_project 4 41694189 41704613 - MGP_C3HHeJ_P0065025 Tpm2 protein_coding protein_coding MGP_C3HHeJ_T0065026.1 MGP_C3HHeJ_G0027909.1 mouse_genomes_project 4 41694189 41704482 - MGP_C3HHeJ_P0065026 Tpm2 protein_coding protein_coding MGP_C3HHeJ_T0065027.1 MGP_C3HHeJ_G0027909.1 mouse_genomes_project 4 41694190 41704406 - MGP_C3HHeJ_P0065027 Tpm2 protein_coding protein_coding MGP_C3HHeJ_T0065028.1 MGP_C3HHeJ_G0027909.1 mouse_genomes_project 4 41695160 41700690 - Tpm2 protein_coding processed_transcript MGP_C3HHeJ_T0065029.1 MGP_C3HHeJ_G0027909.1 mouse_genomes_project 4 41700688 41704783 - MGP_C3HHeJ_P0065029 Tpm2 protein_coding protein_coding MGP_C3HHeJ_T0065444.1 MGP_C3HHeJ_G0028013.1 mouse_genomes_project 4 55433630 55488702 - MGP_C3HHeJ_P0065444 Ctnnal1 protein_coding protein_coding MGP_C3HHeJ_T0065445.1 MGP_C3HHeJ_G0028013.1 mouse_genomes_project 4 55434835 55437014 - Ctnnal1 protein_coding processed_transcript MGP_C3HHeJ_T0065446.1 MGP_C3HHeJ_G0028013.1 mouse_genomes_project 4 55439682 55440350 - Ctnnal1 protein_coding processed_transcript MGP_C3HHeJ_T0065447.1 MGP_C3HHeJ_G0028013.1 mouse_genomes_project 4 55446717 55462341 - Ctnnal1 protein_coding processed_transcript MGP_C3HHeJ_T0065448.1 MGP_C3HHeJ_G0028013.1 mouse_genomes_project 4 55448662 55488682 - Ctnnal1 protein_coding processed_transcript MGP_C3HHeJ_T0065449.1 MGP_C3HHeJ_G0028013.1 mouse_genomes_project 4 55448925 55452517 - Ctnnal1 protein_coding processed_transcript MGP_C3HHeJ_T0065450.1 MGP_C3HHeJ_G0028013.1 mouse_genomes_project 4 55452188 55461297 - Ctnnal1 protein_coding processed_transcript MGP_C3HHeJ_T0065451.1 MGP_C3HHeJ_G0028013.1 mouse_genomes_project 4 55464448 55488668 - MGP_C3HHeJ_P0065451 Ctnnal1 protein_coding protein_coding MGP_C3HHeJ_T0065452.1 MGP_C3HHeJ_G0028013.1 mouse_genomes_project 4 55468416 55470209 - Ctnnal1 protein_coding processed_transcript MGP_C3HHeJ_T0065103.1 MGP_C3HHeJ_G0027930.1 mouse_genomes_project 4 42213553 42243842 + MGP_C3HHeJ_P0065103 Clta protein_coding protein_coding MGP_C3HHeJ_T0065104.1 MGP_C3HHeJ_G0027930.1 mouse_genomes_project 4 42223633 42243842 + MGP_C3HHeJ_P0065104 Clta protein_coding protein_coding MGP_C3HHeJ_T0065105.1 MGP_C3HHeJ_G0027930.1 mouse_genomes_project 4 42223638 42243841 + MGP_C3HHeJ_P0065105 Clta protein_coding protein_coding MGP_C3HHeJ_T0065106.1 MGP_C3HHeJ_G0027930.1 mouse_genomes_project 4 42223673 42243842 + MGP_C3HHeJ_P0065106 Clta protein_coding protein_coding MGP_C3HHeJ_T0065107.1 MGP_C3HHeJ_G0027930.1 mouse_genomes_project 4 42223673 42243842 + MGP_C3HHeJ_P0065107 Clta protein_coding protein_coding MGP_C3HHeJ_T0065108.1 MGP_C3HHeJ_G0027930.1 mouse_genomes_project 4 42223681 42243842 + MGP_C3HHeJ_P0065108 Clta protein_coding protein_coding MGP_C3HHeJ_T0007831.1 MGP_C3HHeJ_G0006398.1 mouse_genomes_project 4 106139206 106159048 - Gm12729 lincRNA lincRNA MGP_C3HHeJ_T0010562.1 MGP_C3HHeJ_G0008695.1 mouse_genomes_project 4 141821093 141821157 + Gm25951 miRNA miRNA MGP_C3HHeJ_T0064517.1 MGP_C3HHeJ_G0027798.1 mouse_genomes_project 4 21740990 21933542 - MGP_C3HHeJ_P0064517 Klhl32 protein_coding protein_coding MGP_C3HHeJ_T0064518.1 MGP_C3HHeJ_G0027798.1 mouse_genomes_project 4 21740990 21991317 - MGP_C3HHeJ_P0064518 Klhl32 protein_coding protein_coding MGP_C3HHeJ_T0064519.1 MGP_C3HHeJ_G0027798.1 mouse_genomes_project 4 21744434 21877921 - MGP_C3HHeJ_P0064519 Klhl32 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064520.1 MGP_C3HHeJ_G0027798.1 mouse_genomes_project 4 21744523 21991124 - MGP_C3HHeJ_P0064520 Klhl32 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064521.1 MGP_C3HHeJ_G0027798.1 mouse_genomes_project 4 21745741 21991279 - MGP_C3HHeJ_P0064521 Klhl32 protein_coding protein_coding MGP_C3HHeJ_T0064522.1 MGP_C3HHeJ_G0027798.1 mouse_genomes_project 4 21778926 21991124 - Klhl32 protein_coding retained_intron MGP_C3HHeJ_T0064523.1 MGP_C3HHeJ_G0027798.1 mouse_genomes_project 4 21779468 21804746 - Klhl32 protein_coding processed_transcript MGP_C3HHeJ_T0102003.1 MGP_C3HHeJ_G0039968.1 mouse_genomes_project 4 112844965 112866367 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0067795.1 MGP_C3HHeJ_G0028545.1 mouse_genomes_project 4 130620940 130627809 + MGP_C3HHeJ_P0067795 Fabp3 protein_coding protein_coding MGP_C3HHeJ_T0014569.1 MGP_C3HHeJ_G0012673.1 mouse_genomes_project 4 120044493 120045175 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067794.1 MGP_C3HHeJ_G0028544.1 mouse_genomes_project 4 130620507 130621020 - MGP_C3HHeJ_P0067794 Gm10570 protein_coding protein_coding MGP_C3HHeJ_T0065257.1 MGP_C3HHeJ_G0027956.1 mouse_genomes_project 4 44708829 44723224 - MGP_C3HHeJ_P0065257 Trmo protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065258.1 MGP_C3HHeJ_G0027956.1 mouse_genomes_project 4 44709303 44723229 - MGP_C3HHeJ_P0065258 Trmo protein_coding protein_coding MGP_C3HHeJ_T0065259.1 MGP_C3HHeJ_G0027956.1 mouse_genomes_project 4 44713109 44723243 - MGP_C3HHeJ_P0065259 Trmo protein_coding protein_coding MGP_C3HHeJ_T0067411.1 MGP_C3HHeJ_G0028468.1 mouse_genomes_project 4 126203223 126205354 + MGP_C3HHeJ_P0067411 Eva1b protein_coding protein_coding MGP_C3HHeJ_T0067412.1 MGP_C3HHeJ_G0028468.1 mouse_genomes_project 4 126203482 126205355 + MGP_C3HHeJ_P0067412 Eva1b protein_coding protein_coding MGP_C3HHeJ_T0067413.1 MGP_C3HHeJ_G0028468.1 mouse_genomes_project 4 126204011 126205345 + MGP_C3HHeJ_P0067413 Eva1b protein_coding protein_coding MGP_C3HHeJ_T0014358.1 MGP_C3HHeJ_G0012462.1 mouse_genomes_project 4 39124614 39125573 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065375.1 MGP_C3HHeJ_G0027989.1 mouse_genomes_project 4 49734489 49748962 + MGP_C3HHeJ_P0065375 Cylc2 protein_coding protein_coding MGP_C3HHeJ_T0068137.1 MGP_C3HHeJ_G0028616.1 mouse_genomes_project 4 134835531 134838630 + MGP_C3HHeJ_P0068137 Gm30191 protein_coding protein_coding MGP_C3HHeJ_T0064233.1 MGP_C3HHeJ_G0027732.1 mouse_genomes_project 4 2293710 2447790 + Fam110b protein_coding processed_transcript MGP_C3HHeJ_T0064234.1 MGP_C3HHeJ_G0027732.1 mouse_genomes_project 4 2293741 2450509 + MGP_C3HHeJ_P0064234 Fam110b protein_coding protein_coding MGP_C3HHeJ_T0064235.1 MGP_C3HHeJ_G0027732.1 mouse_genomes_project 4 2293745 2382494 + Fam110b protein_coding retained_intron MGP_C3HHeJ_T0064236.1 MGP_C3HHeJ_G0027732.1 mouse_genomes_project 4 2293810 2447902 + Fam110b protein_coding processed_transcript MGP_C3HHeJ_T0064237.1 MGP_C3HHeJ_G0027732.1 mouse_genomes_project 4 2293855 2760081 + Fam110b protein_coding processed_transcript MGP_C3HHeJ_T0064238.1 MGP_C3HHeJ_G0027732.1 mouse_genomes_project 4 2372810 2450509 + MGP_C3HHeJ_P0064238 Fam110b protein_coding protein_coding MGP_C3HHeJ_T0064239.1 MGP_C3HHeJ_G0027732.1 mouse_genomes_project 4 2420329 2448253 + MGP_C3HHeJ_P0064239 Fam110b protein_coding protein_coding MGP_C3HHeJ_T0064240.1 MGP_C3HHeJ_G0027732.1 mouse_genomes_project 4 2420329 2449354 + MGP_C3HHeJ_P0064240 Fam110b protein_coding protein_coding MGP_C3HHeJ_T0064241.1 MGP_C3HHeJ_G0027732.1 mouse_genomes_project 4 2447491 2447939 + Fam110b protein_coding processed_transcript MGP_C3HHeJ_T0099336.1 MGP_C3HHeJ_G0037530.1 mouse_genomes_project 4 31633541 31633649 + Gm25623 snRNA snRNA MGP_C3HHeJ_T0067075.1 MGP_C3HHeJ_G0028377.1 mouse_genomes_project 4 119318743 119319884 - MGP_C3HHeJ_P0067075 Olfr1335 protein_coding protein_coding MGP_C3HHeJ_T0066126.1 MGP_C3HHeJ_G0028178.1 mouse_genomes_project 4 99769536 99771919 + MGP_C3HHeJ_P0066126 Efcab7 protein_coding protein_coding MGP_C3HHeJ_T0066127.1 MGP_C3HHeJ_G0028178.1 mouse_genomes_project 4 99769778 99771919 + MGP_C3HHeJ_P0066127 Efcab7 protein_coding protein_coding MGP_C3HHeJ_T0066128.1 MGP_C3HHeJ_G0028178.1 mouse_genomes_project 4 99769838 99771919 + MGP_C3HHeJ_P0066128 Efcab7 protein_coding protein_coding MGP_C3HHeJ_T0066129.1 MGP_C3HHeJ_G0028178.1 mouse_genomes_project 4 99769851 99821615 + MGP_C3HHeJ_P0066129 Efcab7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0066130.1 MGP_C3HHeJ_G0028178.1 mouse_genomes_project 4 99771732 99821615 + MGP_C3HHeJ_P0066130 Efcab7 protein_coding protein_coding MGP_C3HHeJ_T0066131.1 MGP_C3HHeJ_G0028178.1 mouse_genomes_project 4 99818584 99822651 + MGP_C3HHeJ_P0066131 Efcab7 protein_coding protein_coding MGP_C3HHeJ_T0010541.1 MGP_C3HHeJ_G0008674.1 mouse_genomes_project 4 130031108 130031234 - Gm28017 miRNA miRNA MGP_C3HHeJ_T0001390.1 MGP_C3HHeJ_G0001321.1 mouse_genomes_project 4 141394730 141397377 - TEC TEC MGP_C3HHeJ_T0068566.1 MGP_C3HHeJ_G0028720.1 mouse_genomes_project 4 140763050 140880677 - MGP_C3HHeJ_P0068566 Pax7 protein_coding protein_coding MGP_C3HHeJ_T0068567.1 MGP_C3HHeJ_G0028720.1 mouse_genomes_project 4 140766713 140879029 - MGP_C3HHeJ_P0068567 Pax7 protein_coding protein_coding MGP_C3HHeJ_T0017858.1 MGP_C3HHeJ_G0015330.1 mouse_genomes_project 4 116999073 117008314 - C530005A16Rik processed_transcript processed_transcript MGP_C3HHeJ_T0100678.1 MGP_C3HHeJ_G0038872.1 mouse_genomes_project 4 132742092 132742222 + Snora61 snoRNA snoRNA MGP_C3HHeJ_T0014282.1 MGP_C3HHeJ_G0012386.1 mouse_genomes_project 4 18045967 18047028 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068150.1 MGP_C3HHeJ_G0028620.1 mouse_genomes_project 4 134928162 134928491 - MGP_C3HHeJ_P0068150 Gm8186 protein_coding protein_coding MGP_C3HHeJ_T0064228.1 MGP_C3HHeJ_G0027729.1 mouse_genomes_project 4 728597 752128 - MGP_C3HHeJ_P0064228 Sdr16c6 protein_coding protein_coding MGP_C3HHeJ_T0064229.1 MGP_C3HHeJ_G0027729.1 mouse_genomes_project 4 728599 752719 - MGP_C3HHeJ_P0064229 Sdr16c6 protein_coding protein_coding MGP_C3HHeJ_T0014494.1 MGP_C3HHeJ_G0012598.1 mouse_genomes_project 4 97367576 97368243 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068015.1 MGP_C3HHeJ_G0028590.1 mouse_genomes_project 4 133997336 134005191 + MGP_C3HHeJ_P0068015 Fam46b protein_coding protein_coding MGP_C3HHeJ_T0014507.1 MGP_C3HHeJ_G0012611.1 mouse_genomes_project 4 100499669 100500126 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014247.1 MGP_C3HHeJ_G0012351.1 mouse_genomes_project 4 8459183 8460036 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014589.1 MGP_C3HHeJ_G0012693.1 mouse_genomes_project 4 123873343 123873891 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007763.1 MGP_C3HHeJ_G0006341.1 mouse_genomes_project 4 52729082 52729580 - lincRNA lincRNA MGP_C3HHeJ_T0066585.1 MGP_C3HHeJ_G0028269.1 mouse_genomes_project 4 109873726 109878200 - MGP_C3HHeJ_P0066585 Cdkn2c protein_coding protein_coding MGP_C3HHeJ_T0066586.1 MGP_C3HHeJ_G0028269.1 mouse_genomes_project 4 109873726 109880017 - MGP_C3HHeJ_P0066586 Cdkn2c protein_coding protein_coding MGP_C3HHeJ_T0014663.1 MGP_C3HHeJ_G0012767.1 mouse_genomes_project 4 156506847 156508559 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004420.1 MGP_C3HHeJ_G0003841.1 mouse_genomes_project 4 107116669 107121197 - Gm12786 antisense antisense MGP_C3HHeJ_T0065372.1 MGP_C3HHeJ_G0027988.1 mouse_genomes_project 4 48170407 48173685 - MGP_C3HHeJ_P0065372 Ppp3r2 protein_coding protein_coding MGP_C3HHeJ_T0064264.1 MGP_C3HHeJ_G0027737.1 mouse_genomes_project 4 3351904 3665220 - MGP_C3HHeJ_P0064264 Tox protein_coding protein_coding MGP_C3HHeJ_T0064265.1 MGP_C3HHeJ_G0027737.1 mouse_genomes_project 4 3355781 3357087 - Tox protein_coding processed_transcript MGP_C3HHeJ_T0064266.1 MGP_C3HHeJ_G0027737.1 mouse_genomes_project 4 3408044 3665978 - Tox protein_coding retained_intron MGP_C3HHeJ_T0064267.1 MGP_C3HHeJ_G0027737.1 mouse_genomes_project 4 3494304 3663931 - Tox protein_coding retained_intron MGP_C3HHeJ_T0069190.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154502194 154513784 - MGP_C3HHeJ_P0069190 Rnf207 protein_coding protein_coding MGP_C3HHeJ_T0069191.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154502486 154504209 - Rnf207 protein_coding retained_intron MGP_C3HHeJ_T0069192.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154506559 154513634 - MGP_C3HHeJ_P0069192 Rnf207 protein_coding protein_coding MGP_C3HHeJ_T0069193.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154506732 154508579 - Rnf207 protein_coding retained_intron MGP_C3HHeJ_T0069194.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154506891 154508524 - Rnf207 protein_coding retained_intron MGP_C3HHeJ_T0069195.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154508009 154508576 - Rnf207 protein_coding retained_intron MGP_C3HHeJ_T0069196.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154508568 154513657 - MGP_C3HHeJ_P0069196 Rnf207 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069197.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154508578 154511141 - Rnf207 protein_coding retained_intron MGP_C3HHeJ_T0069198.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154509728 154514169 - Rnf207 protein_coding retained_intron MGP_C3HHeJ_T0069199.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154509730 154513795 - Rnf207 protein_coding retained_intron MGP_C3HHeJ_T0069200.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154510061 154513801 - Rnf207 protein_coding retained_intron MGP_C3HHeJ_T0069201.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154510636 154511504 - Rnf207 protein_coding retained_intron MGP_C3HHeJ_T0014348.1 MGP_C3HHeJ_G0012452.1 mouse_genomes_project 4 37184147 37184908 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067318.1 MGP_C3HHeJ_G0028442.1 mouse_genomes_project 4 123875825 123882014 + MGP_C3HHeJ_P0067318 Mycbp protein_coding protein_coding MGP_C3HHeJ_T0067319.1 MGP_C3HHeJ_G0028442.1 mouse_genomes_project 4 123875915 123882075 + MGP_C3HHeJ_P0067319 Mycbp protein_coding protein_coding MGP_C3HHeJ_T0067320.1 MGP_C3HHeJ_G0028442.1 mouse_genomes_project 4 123875952 123880663 + Mycbp protein_coding processed_transcript MGP_C3HHeJ_T0067321.1 MGP_C3HHeJ_G0028442.1 mouse_genomes_project 4 123876047 123882180 + Mycbp protein_coding processed_transcript MGP_C3HHeJ_T0014448.1 MGP_C3HHeJ_G0012552.1 mouse_genomes_project 4 76012554 76013591 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014657.1 MGP_C3HHeJ_G0012761.1 mouse_genomes_project 4 152983575 152983970 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017836.1 MGP_C3HHeJ_G0015315.1 mouse_genomes_project 4 88783719 88812701 - Gm12602 processed_transcript processed_transcript MGP_C3HHeJ_T0017837.1 MGP_C3HHeJ_G0015315.1 mouse_genomes_project 4 88807121 88812656 - Gm12602 processed_transcript processed_transcript MGP_C3HHeJ_T0067328.1 MGP_C3HHeJ_G0028445.1 mouse_genomes_project 4 124609510 124610383 - MGP_C3HHeJ_P0067328 3100002H09Rik protein_coding protein_coding MGP_C3HHeJ_T0102026.1 MGP_C3HHeJ_G0039991.1 mouse_genomes_project 4 145330967 145334470 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007815.1 MGP_C3HHeJ_G0006385.1 mouse_genomes_project 4 95161821 95162634 - Gm29064 lincRNA lincRNA MGP_C3HHeJ_T0099378.1 MGP_C3HHeJ_G0037572.1 mouse_genomes_project 4 117089855 117089965 + Gm25137 snRNA snRNA MGP_C3HHeJ_T0100626.1 MGP_C3HHeJ_G0038820.1 mouse_genomes_project 4 52465937 52466062 + Gm23745 snoRNA snoRNA MGP_C3HHeJ_T0004392.1 MGP_C3HHeJ_G0003823.1 mouse_genomes_project 4 73373446 73374837 - A230083N12Rik antisense antisense MGP_C3HHeJ_T0098472.1 MGP_C3HHeJ_G0036677.1 mouse_genomes_project 4 83147499 83147980 + Gm26968 sense_intronic sense_intronic MGP_C3HHeJ_T0067084.1 MGP_C3HHeJ_G0028385.1 mouse_genomes_project 4 119635842 119665081 + MGP_C3HHeJ_P0067084 Slc2a1 protein_coding protein_coding MGP_C3HHeJ_T0067085.1 MGP_C3HHeJ_G0028385.1 mouse_genomes_project 4 119635935 119659690 + MGP_C3HHeJ_P0067085 Slc2a1 protein_coding protein_coding MGP_C3HHeJ_T0067086.1 MGP_C3HHeJ_G0028385.1 mouse_genomes_project 4 119635990 119659662 + MGP_C3HHeJ_P0067086 Slc2a1 protein_coding protein_coding MGP_C3HHeJ_T0067087.1 MGP_C3HHeJ_G0028385.1 mouse_genomes_project 4 119636045 119664423 + MGP_C3HHeJ_P0067087 Slc2a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065431.1 MGP_C3HHeJ_G0028008.1 mouse_genomes_project 4 55362120 55363559 - MGP_C3HHeJ_P0065431 Actl7b protein_coding protein_coding MGP_C3HHeJ_T0064604.1 MGP_C3HHeJ_G0027820.1 mouse_genomes_project 4 30726321 30729409 - MGP_C3HHeJ_P0064604 Pnrc1 protein_coding protein_coding MGP_C3HHeJ_T0064605.1 MGP_C3HHeJ_G0027820.1 mouse_genomes_project 4 30726902 30728474 - Pnrc1 protein_coding processed_transcript MGP_C3HHeJ_T0064606.1 MGP_C3HHeJ_G0027820.1 mouse_genomes_project 4 30726910 30775608 - Pnrc1 protein_coding processed_transcript MGP_C3HHeJ_T0067932.1 MGP_C3HHeJ_G0028571.1 mouse_genomes_project 4 133030125 133048383 + MGP_C3HHeJ_P0067932 Ptafr protein_coding protein_coding MGP_C3HHeJ_T0014616.1 MGP_C3HHeJ_G0012720.1 mouse_genomes_project 4 134924585 134924846 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068534.1 MGP_C3HHeJ_G0028713.1 mouse_genomes_project 4 140342877 140345459 - Mrto4 protein_coding processed_transcript MGP_C3HHeJ_T0068535.1 MGP_C3HHeJ_G0028713.1 mouse_genomes_project 4 140342877 140348405 - MGP_C3HHeJ_P0068535 Mrto4 protein_coding protein_coding MGP_C3HHeJ_T0068536.1 MGP_C3HHeJ_G0028713.1 mouse_genomes_project 4 140342887 140348127 - MGP_C3HHeJ_P0068536 Mrto4 protein_coding protein_coding MGP_C3HHeJ_T0068537.1 MGP_C3HHeJ_G0028713.1 mouse_genomes_project 4 140343969 140345477 - Mrto4 protein_coding retained_intron MGP_C3HHeJ_T0068538.1 MGP_C3HHeJ_G0028713.1 mouse_genomes_project 4 140344570 140348140 - MGP_C3HHeJ_P0068538 Mrto4 protein_coding protein_coding MGP_C3HHeJ_T0068539.1 MGP_C3HHeJ_G0028713.1 mouse_genomes_project 4 140344632 140348362 - Mrto4 protein_coding retained_intron MGP_C3HHeJ_T0068540.1 MGP_C3HHeJ_G0028713.1 mouse_genomes_project 4 140345730 140348139 - Mrto4 protein_coding retained_intron MGP_C3HHeJ_T0099339.1 MGP_C3HHeJ_G0037533.1 mouse_genomes_project 4 37774210 37774292 + Gm22850 snRNA snRNA MGP_C3HHeJ_T0007745.1 MGP_C3HHeJ_G0006327.1 mouse_genomes_project 4 38634365 38636610 - Gm6297 lincRNA lincRNA MGP_C3HHeJ_T0004455.1 MGP_C3HHeJ_G0003867.1 mouse_genomes_project 4 123798790 123832717 - 1700121C08Rik antisense antisense MGP_C3HHeJ_T0014302.1 MGP_C3HHeJ_G0012406.1 mouse_genomes_project 4 23008093 23008560 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066174.1 MGP_C3HHeJ_G0028191.1 mouse_genomes_project 4 101813879 101818847 - MGP_C3HHeJ_P0066174 C130073F10Rik protein_coding protein_coding MGP_C3HHeJ_T0069327.1 MGP_C3HHeJ_G0028903.1 mouse_genomes_project 4 157192211 157195746 - Fam213b protein_coding processed_transcript MGP_C3HHeJ_T0069328.1 MGP_C3HHeJ_G0028903.1 mouse_genomes_project 4 157193106 157195818 - MGP_C3HHeJ_P0069328 Fam213b protein_coding protein_coding MGP_C3HHeJ_T0069329.1 MGP_C3HHeJ_G0028903.1 mouse_genomes_project 4 157194042 157195843 - MGP_C3HHeJ_P0069329 Fam213b protein_coding protein_coding MGP_C3HHeJ_T0064427.1 MGP_C3HHeJ_G0027774.1 mouse_genomes_project 4 12889752 12906501 - MGP_C3HHeJ_P0064427 Osgin2 protein_coding protein_coding MGP_C3HHeJ_T0064428.1 MGP_C3HHeJ_G0027774.1 mouse_genomes_project 4 12889858 12894734 - Osgin2 protein_coding processed_transcript MGP_C3HHeJ_T0064429.1 MGP_C3HHeJ_G0027774.1 mouse_genomes_project 4 12894576 12906409 - MGP_C3HHeJ_P0064429 Osgin2 protein_coding protein_coding MGP_C3HHeJ_T0064430.1 MGP_C3HHeJ_G0027774.1 mouse_genomes_project 4 12895156 12906434 - Osgin2 protein_coding processed_transcript MGP_C3HHeJ_T0064431.1 MGP_C3HHeJ_G0027774.1 mouse_genomes_project 4 12897503 12899018 - Osgin2 protein_coding processed_transcript MGP_C3HHeJ_T0068752.1 MGP_C3HHeJ_G0028767.1 mouse_genomes_project 4 144675012 144683680 + MGP_C3HHeJ_P0068752 Pramef8 protein_coding protein_coding MGP_C3HHeJ_T0068753.1 MGP_C3HHeJ_G0028767.1 mouse_genomes_project 4 144675558 144679431 + MGP_C3HHeJ_P0068753 Pramef8 protein_coding protein_coding MGP_C3HHeJ_T0068754.1 MGP_C3HHeJ_G0028767.1 mouse_genomes_project 4 144675573 144683680 + MGP_C3HHeJ_P0068754 Pramef8 protein_coding protein_coding MGP_C3HHeJ_T0068755.1 MGP_C3HHeJ_G0028767.1 mouse_genomes_project 4 144675595 144680258 + MGP_C3HHeJ_P0068755 Pramef8 protein_coding protein_coding MGP_C3HHeJ_T0068756.1 MGP_C3HHeJ_G0028767.1 mouse_genomes_project 4 144675596 144676963 + Pramef8 protein_coding processed_transcript MGP_C3HHeJ_T0098470.1 MGP_C3HHeJ_G0036675.1 mouse_genomes_project 4 57818651 57821046 - Gm12594 sense_intronic sense_intronic MGP_C3HHeJ_T0068079.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134630115 134662965 + MGP_C3HHeJ_P0068079 Aim1l protein_coding unknown_likely_coding MGP_C3HHeJ_T0068080.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134635038 134641813 + MGP_C3HHeJ_P0068080 Aim1l protein_coding protein_coding MGP_C3HHeJ_T0068081.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134637492 134663062 + MGP_C3HHeJ_P0068081 Aim1l protein_coding protein_coding MGP_C3HHeJ_T0068082.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134647932 134651781 + Aim1l protein_coding processed_transcript MGP_C3HHeJ_T0068083.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134648013 134656792 + MGP_C3HHeJ_P0068083 Aim1l protein_coding protein_coding MGP_C3HHeJ_T0068084.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134651406 134661657 + Aim1l protein_coding retained_intron MGP_C3HHeJ_T0068085.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134651406 134663059 + Aim1l protein_coding retained_intron MGP_C3HHeJ_T0068086.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134651409 134658786 + Aim1l protein_coding retained_intron MGP_C3HHeJ_T0068087.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134651444 134658350 + Aim1l protein_coding retained_intron MGP_C3HHeJ_T0068088.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134651530 134651964 + Aim1l protein_coding retained_intron MGP_C3HHeJ_T0068090.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134661375 134662944 + Aim1l protein_coding retained_intron MGP_C3HHeJ_T0068091.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134661710 134663054 + Aim1l protein_coding processed_transcript MGP_C3HHeJ_T0007876.1 MGP_C3HHeJ_G0006429.1 mouse_genomes_project 4 129041702 129070873 + Gm12968 lincRNA lincRNA MGP_C3HHeJ_T0014379.1 MGP_C3HHeJ_G0012483.1 mouse_genomes_project 4 50590523 50590823 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004492.1 MGP_C3HHeJ_G0003897.1 mouse_genomes_project 4 141205722 141207483 + Gm13029 antisense antisense MGP_C3HHeJ_T0007843.1 MGP_C3HHeJ_G0006405.1 mouse_genomes_project 4 108077091 108083890 + 4930407G08Rik lincRNA lincRNA MGP_C3HHeJ_T0004393.1 MGP_C3HHeJ_G0003824.1 mouse_genomes_project 4 81856892 81900345 + Gm11266 antisense antisense MGP_C3HHeJ_T0068027.1 MGP_C3HHeJ_G0028595.1 mouse_genomes_project 4 134105672 134119628 + MGP_C3HHeJ_P0068027 Gpatch3 protein_coding protein_coding MGP_C3HHeJ_T0068028.1 MGP_C3HHeJ_G0028595.1 mouse_genomes_project 4 134110585 134118376 + Gpatch3 protein_coding processed_transcript MGP_C3HHeJ_T0014457.1 MGP_C3HHeJ_G0012561.1 mouse_genomes_project 4 81057921 81058629 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068822.1 MGP_C3HHeJ_G0028809.1 mouse_genomes_project 4 149787659 149795435 - MGP_C3HHeJ_P0068822 Miip protein_coding protein_coding MGP_C3HHeJ_T0068823.1 MGP_C3HHeJ_G0028809.1 mouse_genomes_project 4 149787667 149795532 - MGP_C3HHeJ_P0068823 Miip protein_coding protein_coding MGP_C3HHeJ_T0068824.1 MGP_C3HHeJ_G0028809.1 mouse_genomes_project 4 149787671 149789642 - Miip protein_coding retained_intron MGP_C3HHeJ_T0068825.1 MGP_C3HHeJ_G0028809.1 mouse_genomes_project 4 149787672 149795215 - Miip protein_coding retained_intron MGP_C3HHeJ_T0068826.1 MGP_C3HHeJ_G0028809.1 mouse_genomes_project 4 149787672 149795199 - MGP_C3HHeJ_P0068826 Miip protein_coding protein_coding MGP_C3HHeJ_T0068827.1 MGP_C3HHeJ_G0028809.1 mouse_genomes_project 4 149789679 149795382 - Miip protein_coding retained_intron MGP_C3HHeJ_T0068828.1 MGP_C3HHeJ_G0028809.1 mouse_genomes_project 4 149790432 149792263 - Miip protein_coding retained_intron MGP_C3HHeJ_T0068829.1 MGP_C3HHeJ_G0028809.1 mouse_genomes_project 4 149792851 149795239 - Miip protein_coding retained_intron MGP_C3HHeJ_T0098128.1 MGP_C3HHeJ_G0036340.1 mouse_genomes_project 4 39268398 39268513 + n-R5s183 rRNA rRNA MGP_C3HHeJ_T0014619.1 MGP_C3HHeJ_G0012723.1 mouse_genomes_project 4 135977755 135977945 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066112.1 MGP_C3HHeJ_G0028174.1 mouse_genomes_project 4 99196710 99198141 + MGP_C3HHeJ_P0066112 Gm12689 protein_coding protein_coding MGP_C3HHeJ_T0065790.1 MGP_C3HHeJ_G0028098.1 mouse_genomes_project 4 82586038 82708139 - MGP_C3HHeJ_P0065790 Ttc39b protein_coding protein_coding MGP_C3HHeJ_T0065791.1 MGP_C3HHeJ_G0028098.1 mouse_genomes_project 4 82592162 82598914 - Ttc39b protein_coding retained_intron MGP_C3HHeJ_T0065792.1 MGP_C3HHeJ_G0028098.1 mouse_genomes_project 4 82605526 82708123 - MGP_C3HHeJ_P0065792 Ttc39b protein_coding protein_coding MGP_C3HHeJ_T0065793.1 MGP_C3HHeJ_G0028098.1 mouse_genomes_project 4 82614444 82641672 - Ttc39b protein_coding processed_transcript MGP_C3HHeJ_T0065794.1 MGP_C3HHeJ_G0028098.1 mouse_genomes_project 4 82627268 82665294 - MGP_C3HHeJ_P0065794 Ttc39b protein_coding protein_coding MGP_C3HHeJ_T0065795.1 MGP_C3HHeJ_G0028098.1 mouse_genomes_project 4 82633498 82708073 - MGP_C3HHeJ_P0065795 Ttc39b protein_coding protein_coding MGP_C3HHeJ_T0065796.1 MGP_C3HHeJ_G0028098.1 mouse_genomes_project 4 82633629 82659574 - MGP_C3HHeJ_P0065796 Ttc39b protein_coding protein_coding MGP_C3HHeJ_T0007940.1 MGP_C3HHeJ_G0006476.1 mouse_genomes_project 4 151830661 151831352 - Gm13073 lincRNA lincRNA MGP_C3HHeJ_T0007818.1 MGP_C3HHeJ_G0006388.1 mouse_genomes_project 4 99584032 99585409 - Gm12688 lincRNA lincRNA MGP_C3HHeJ_T0068207.1 MGP_C3HHeJ_G0028636.1 mouse_genomes_project 4 135774474 135838260 + MGP_C3HHeJ_P0068207 Runx3 protein_coding protein_coding MGP_C3HHeJ_T0068208.1 MGP_C3HHeJ_G0028636.1 mouse_genomes_project 4 135810013 135835628 + MGP_C3HHeJ_P0068208 Runx3 protein_coding protein_coding MGP_C3HHeJ_T0068209.1 MGP_C3HHeJ_G0028636.1 mouse_genomes_project 4 135811104 135813750 + Runx3 protein_coding retained_intron MGP_C3HHeJ_T0068210.1 MGP_C3HHeJ_G0028636.1 mouse_genomes_project 4 135811326 135813512 + Runx3 protein_coding processed_transcript MGP_C3HHeJ_T0068211.1 MGP_C3HHeJ_G0028636.1 mouse_genomes_project 4 135811671 135813567 + Runx3 protein_coding processed_transcript MGP_C3HHeJ_T0068212.1 MGP_C3HHeJ_G0028636.1 mouse_genomes_project 4 135812576 135813483 + Runx3 protein_coding processed_transcript MGP_C3HHeJ_T0065977.1 MGP_C3HHeJ_G0028146.1 mouse_genomes_project 4 94387350 94402763 - MGP_C3HHeJ_P0065977 Lrrc19 protein_coding protein_coding MGP_C3HHeJ_T0065978.1 MGP_C3HHeJ_G0028146.1 mouse_genomes_project 4 94387350 94402791 - MGP_C3HHeJ_P0065978 Lrrc19 protein_coding protein_coding MGP_C3HHeJ_T0100648.1 MGP_C3HHeJ_G0038842.1 mouse_genomes_project 4 88873885 88874025 - Gm26490 snoRNA snoRNA MGP_C3HHeJ_T0068499.1 MGP_C3HHeJ_G0028703.1 mouse_genomes_project 4 139841333 139846136 + MGP_C3HHeJ_P0068499 Pla2g2e protein_coding protein_coding MGP_C3HHeJ_T0068500.1 MGP_C3HHeJ_G0028703.1 mouse_genomes_project 4 139841362 139845831 + MGP_C3HHeJ_P0068500 Pla2g2e protein_coding protein_coding MGP_C3HHeJ_T0068501.1 MGP_C3HHeJ_G0028703.1 mouse_genomes_project 4 139842746 139846136 + MGP_C3HHeJ_P0068501 Pla2g2e protein_coding protein_coding MGP_C3HHeJ_T0014274.1 MGP_C3HHeJ_G0012378.1 mouse_genomes_project 4 15466891 15467337 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004460.1 MGP_C3HHeJ_G0003871.1 mouse_genomes_project 4 124969931 125001628 - Gm12930 antisense antisense MGP_C3HHeJ_T0004429.1 MGP_C3HHeJ_G0003846.1 mouse_genomes_project 4 109118444 109150156 - 8030443G20Rik antisense antisense MGP_C3HHeJ_T0068767.1 MGP_C3HHeJ_G0028777.1 mouse_genomes_project 4 145010971 145014074 + MGP_C3HHeJ_P0068767 protein_coding protein_coding MGP_C3HHeJ_T0064404.1 MGP_C3HHeJ_G0027765.1 mouse_genomes_project 4 11373977 11497310 - MGP_C3HHeJ_P0064404 Slc26a7 protein_coding protein_coding MGP_C3HHeJ_T0064405.1 MGP_C3HHeJ_G0027765.1 mouse_genomes_project 4 11376836 11387966 - Slc26a7 protein_coding processed_transcript MGP_C3HHeJ_T0064406.1 MGP_C3HHeJ_G0027765.1 mouse_genomes_project 4 11377014 11424378 - MGP_C3HHeJ_P0064406 Slc26a7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0064407.1 MGP_C3HHeJ_G0027765.1 mouse_genomes_project 4 11437146 11497032 - MGP_C3HHeJ_P0064407 Slc26a7 protein_coding protein_coding MGP_C3HHeJ_T0064408.1 MGP_C3HHeJ_G0027765.1 mouse_genomes_project 4 11465981 11497174 - MGP_C3HHeJ_P0064408 Slc26a7 protein_coding protein_coding MGP_C3HHeJ_T0014409.1 MGP_C3HHeJ_G0012513.1 mouse_genomes_project 4 60687623 60688886 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014278.1 MGP_C3HHeJ_G0012382.1 mouse_genomes_project 4 16263607 16264455 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066395.1 MGP_C3HHeJ_G0028236.1 mouse_genomes_project 4 107556077 107557523 + Glis1 protein_coding processed_transcript MGP_C3HHeJ_T0066396.1 MGP_C3HHeJ_G0028236.1 mouse_genomes_project 4 107556103 107678194 + MGP_C3HHeJ_P0066396 Glis1 protein_coding protein_coding MGP_C3HHeJ_T0066397.1 MGP_C3HHeJ_G0028236.1 mouse_genomes_project 4 107556205 107754650 + MGP_C3HHeJ_P0066397 Glis1 protein_coding protein_coding MGP_C3HHeJ_T0066398.1 MGP_C3HHeJ_G0028236.1 mouse_genomes_project 4 107560484 107754650 + MGP_C3HHeJ_P0066398 Glis1 protein_coding protein_coding MGP_C3HHeJ_T0066399.1 MGP_C3HHeJ_G0028236.1 mouse_genomes_project 4 107696070 107747014 + Glis1 protein_coding processed_transcript MGP_C3HHeJ_T0066400.1 MGP_C3HHeJ_G0028236.1 mouse_genomes_project 4 107734530 107751938 + Glis1 protein_coding processed_transcript MGP_C3HHeJ_T0065921.1 MGP_C3HHeJ_G0028118.1 mouse_genomes_project 4 88177954 88178527 - MGP_C3HHeJ_P0065921 Ifna15 protein_coding protein_coding MGP_C3HHeJ_T0065522.1 MGP_C3HHeJ_G0028029.1 mouse_genomes_project 4 57620232 57635106 + MGP_C3HHeJ_P0065522 Zkscan16 protein_coding protein_coding MGP_C3HHeJ_T0007770.1 MGP_C3HHeJ_G0006347.1 mouse_genomes_project 4 54186733 54220594 + Gm12506 lincRNA lincRNA MGP_C3HHeJ_T0069336.1 MGP_C3HHeJ_G0028905.1 mouse_genomes_project 4 157258181 157259630 + MGP_C3HHeJ_P0069336 Hes5 protein_coding protein_coding MGP_C3HHeJ_T0069337.1 MGP_C3HHeJ_G0028905.1 mouse_genomes_project 4 157258229 157258665 + Hes5 protein_coding processed_transcript MGP_C3HHeJ_T0066273.1 MGP_C3HHeJ_G0028214.1 mouse_genomes_project 4 106501347 106526376 - MGP_C3HHeJ_P0066273 Pcsk9 protein_coding protein_coding MGP_C3HHeJ_T0101984.1 MGP_C3HHeJ_G0039949.1 mouse_genomes_project 4 41981801 41982749 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0065440.1 MGP_C3HHeJ_G0028012.1 mouse_genomes_project 4 55425040 55427321 + Fam206a protein_coding retained_intron MGP_C3HHeJ_T0065441.1 MGP_C3HHeJ_G0028012.1 mouse_genomes_project 4 55425044 55432297 + MGP_C3HHeJ_P0065441 Fam206a protein_coding protein_coding MGP_C3HHeJ_T0065442.1 MGP_C3HHeJ_G0028012.1 mouse_genomes_project 4 55425047 55432297 + MGP_C3HHeJ_P0065442 Fam206a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065443.1 MGP_C3HHeJ_G0028012.1 mouse_genomes_project 4 55425313 55428643 + MGP_C3HHeJ_P0065443 Fam206a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065713.1 MGP_C3HHeJ_G0028084.1 mouse_genomes_project 4 73129647 73318088 + MGP_C3HHeJ_P0065713 Frmd3 protein_coding protein_coding MGP_C3HHeJ_T0065714.1 MGP_C3HHeJ_G0028084.1 mouse_genomes_project 4 73129649 73304796 + MGP_C3HHeJ_P0065714 Frmd3 protein_coding protein_coding MGP_C3HHeJ_T0065715.1 MGP_C3HHeJ_G0028084.1 mouse_genomes_project 4 73284090 73303871 + Frmd3 protein_coding processed_transcript MGP_C3HHeJ_T0014428.1 MGP_C3HHeJ_G0012532.1 mouse_genomes_project 4 70985172 70986164 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068466.1 MGP_C3HHeJ_G0028692.1 mouse_genomes_project 4 139253706 139258926 - Cda protein_coding retained_intron MGP_C3HHeJ_T0068467.1 MGP_C3HHeJ_G0028692.1 mouse_genomes_project 4 139253810 139284890 - MGP_C3HHeJ_P0068467 Cda protein_coding protein_coding MGP_C3HHeJ_T0004443.1 MGP_C3HHeJ_G0003857.1 mouse_genomes_project 4 118382757 118385132 + Gm12841 antisense antisense MGP_C3HHeJ_T0069475.1 MGP_C3HHeJ_G0028929.1 mouse_genomes_project 4 158117732 158121904 - MGP_C3HHeJ_P0069475 Tmem88b protein_coding protein_coding MGP_C3HHeJ_T0067631.1 MGP_C3HHeJ_G0028514.1 mouse_genomes_project 4 129511908 129536672 + MGP_C3HHeJ_P0067631 Sync protein_coding protein_coding MGP_C3HHeJ_T0067632.1 MGP_C3HHeJ_G0028514.1 mouse_genomes_project 4 129511922 129535476 + Sync protein_coding retained_intron MGP_C3HHeJ_T0067654.1 MGP_C3HHeJ_G0028520.1 mouse_genomes_project 4 129738178 129740187 - MGP_C3HHeJ_P0067654 Tssk3 protein_coding protein_coding MGP_C3HHeJ_T0007881.1 MGP_C3HHeJ_G0006433.1 mouse_genomes_project 4 129537192 129546255 + Gm26722 lincRNA lincRNA MGP_C3HHeJ_T0069320.1 MGP_C3HHeJ_G0028902.1 mouse_genomes_project 4 157167486 157192229 + MGP_C3HHeJ_P0069320 Mmel1 protein_coding protein_coding MGP_C3HHeJ_T0069321.1 MGP_C3HHeJ_G0028902.1 mouse_genomes_project 4 157167486 157192236 + MGP_C3HHeJ_P0069321 Mmel1 protein_coding protein_coding MGP_C3HHeJ_T0069322.1 MGP_C3HHeJ_G0028902.1 mouse_genomes_project 4 157167537 157192236 + MGP_C3HHeJ_P0069322 Mmel1 protein_coding protein_coding MGP_C3HHeJ_T0069323.1 MGP_C3HHeJ_G0028902.1 mouse_genomes_project 4 157169506 157192229 + MGP_C3HHeJ_P0069323 Mmel1 protein_coding protein_coding MGP_C3HHeJ_T0069324.1 MGP_C3HHeJ_G0028902.1 mouse_genomes_project 4 157169540 157192229 + MGP_C3HHeJ_P0069324 Mmel1 protein_coding protein_coding MGP_C3HHeJ_T0069325.1 MGP_C3HHeJ_G0028902.1 mouse_genomes_project 4 157178708 157182391 + MGP_C3HHeJ_P0069325 Mmel1 protein_coding protein_coding MGP_C3HHeJ_T0069326.1 MGP_C3HHeJ_G0028902.1 mouse_genomes_project 4 157189532 157190663 + Mmel1 protein_coding retained_intron MGP_C3HHeJ_T0010498.1 MGP_C3HHeJ_G0008631.1 mouse_genomes_project 4 34271487 34271568 - Mir876 miRNA miRNA MGP_C3HHeJ_T0017863.1 MGP_C3HHeJ_G0015335.1 mouse_genomes_project 4 124738987 124756116 - Gm12915 processed_transcript processed_transcript MGP_C3HHeJ_T0014402.1 MGP_C3HHeJ_G0012506.1 mouse_genomes_project 4 56071840 56072326 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004493.1 MGP_C3HHeJ_G0003898.1 mouse_genomes_project 4 142061474 142071659 - Gm13031 antisense antisense MGP_C3HHeJ_T0068675.1 MGP_C3HHeJ_G0028747.1 mouse_genomes_project 4 142605965 142685051 - MGP_C3HHeJ_P0068675 Spen protein_coding protein_coding MGP_C3HHeJ_T0068676.1 MGP_C3HHeJ_G0028747.1 mouse_genomes_project 4 142605965 142684903 - MGP_C3HHeJ_P0068676 Spen protein_coding protein_coding MGP_C3HHeJ_T0068677.1 MGP_C3HHeJ_G0028747.1 mouse_genomes_project 4 142606530 142609560 - Spen protein_coding processed_transcript MGP_C3HHeJ_T0068678.1 MGP_C3HHeJ_G0028747.1 mouse_genomes_project 4 142635042 142658097 - Spen protein_coding processed_transcript MGP_C3HHeJ_T0068679.1 MGP_C3HHeJ_G0028747.1 mouse_genomes_project 4 142662932 142684707 - Spen protein_coding processed_transcript MGP_C3HHeJ_T0007832.1 MGP_C3HHeJ_G0006399.1 mouse_genomes_project 4 106351654 106352641 + Gm12730 lincRNA lincRNA MGP_C3HHeJ_T0017883.1 MGP_C3HHeJ_G0015341.1 mouse_genomes_project 4 134581993 134583696 + Gm13061 processed_transcript processed_transcript MGP_C3HHeJ_T0067280.1 MGP_C3HHeJ_G0028436.1 mouse_genomes_project 4 123171704 123198219 + Pabpc4 protein_coding processed_transcript MGP_C3HHeJ_T0067281.1 MGP_C3HHeJ_G0028436.1 mouse_genomes_project 4 123194280 123213554 + MGP_C3HHeJ_P0067281 Pabpc4 protein_coding protein_coding MGP_C3HHeJ_T0067282.1 MGP_C3HHeJ_G0028436.1 mouse_genomes_project 4 123194287 123213461 + MGP_C3HHeJ_P0067282 Pabpc4 protein_coding protein_coding MGP_C3HHeJ_T0067283.1 MGP_C3HHeJ_G0028436.1 mouse_genomes_project 4 123194300 123213451 + MGP_C3HHeJ_P0067283 Pabpc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067284.1 MGP_C3HHeJ_G0028436.1 mouse_genomes_project 4 123194367 123213461 + MGP_C3HHeJ_P0067284 Pabpc4 protein_coding protein_coding MGP_C3HHeJ_T0067285.1 MGP_C3HHeJ_G0028436.1 mouse_genomes_project 4 123194551 123213461 + MGP_C3HHeJ_P0067285 Pabpc4 protein_coding protein_coding MGP_C3HHeJ_T0067286.1 MGP_C3HHeJ_G0028436.1 mouse_genomes_project 4 123195098 123213159 + MGP_C3HHeJ_P0067286 Pabpc4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067287.1 MGP_C3HHeJ_G0028436.1 mouse_genomes_project 4 123209361 123212635 + Pabpc4 protein_coding processed_transcript MGP_C3HHeJ_T0067288.1 MGP_C3HHeJ_G0028436.1 mouse_genomes_project 4 123211808 123213461 + Pabpc4 protein_coding retained_intron MGP_C3HHeJ_T0068792.1 MGP_C3HHeJ_G0028795.1 mouse_genomes_project 4 146040634 146049935 + MGP_C3HHeJ_P0068792 9430007A20Rik protein_coding protein_coding MGP_C3HHeJ_T0007730.1 MGP_C3HHeJ_G0006312.1 mouse_genomes_project 4 20027357 20037691 - 1700025O08Rik lincRNA lincRNA MGP_C3HHeJ_T0007855.1 MGP_C3HHeJ_G0006417.1 mouse_genomes_project 4 124281385 124290128 - Gm12916 lincRNA lincRNA MGP_C3HHeJ_T0067205.1 MGP_C3HHeJ_G0028411.1 mouse_genomes_project 4 121277039 121328090 - MGP_C3HHeJ_P0067205 Kcnq4 protein_coding protein_coding MGP_C3HHeJ_T0067206.1 MGP_C3HHeJ_G0028411.1 mouse_genomes_project 4 121296117 121330211 - Kcnq4 protein_coding processed_transcript MGP_C3HHeJ_T0014280.1 MGP_C3HHeJ_G0012384.1 mouse_genomes_project 4 17417471 17418775 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014481.1 MGP_C3HHeJ_G0012585.1 mouse_genomes_project 4 91108334 91108895 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014455.1 MGP_C3HHeJ_G0012559.1 mouse_genomes_project 4 79332694 79333837 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068319.1 MGP_C3HHeJ_G0028661.1 mouse_genomes_project 4 137037915 137043577 + MGP_C3HHeJ_P0068319 Zfp46 protein_coding protein_coding MGP_C3HHeJ_T0068320.1 MGP_C3HHeJ_G0028661.1 mouse_genomes_project 4 137038007 137043334 + MGP_C3HHeJ_P0068320 Zfp46 protein_coding protein_coding MGP_C3HHeJ_T0068321.1 MGP_C3HHeJ_G0028661.1 mouse_genomes_project 4 137038301 137039706 + Zfp46 protein_coding processed_transcript MGP_C3HHeJ_T0068322.1 MGP_C3HHeJ_G0028661.1 mouse_genomes_project 4 137039297 137047212 + MGP_C3HHeJ_P0068322 Zfp46 protein_coding protein_coding MGP_C3HHeJ_T0068323.1 MGP_C3HHeJ_G0028661.1 mouse_genomes_project 4 137039334 137043498 + MGP_C3HHeJ_P0068323 Zfp46 protein_coding protein_coding MGP_C3HHeJ_T0004442.1 MGP_C3HHeJ_G0003856.1 mouse_genomes_project 4 117942934 117952512 + Gm12828 antisense antisense MGP_C3HHeJ_T0065888.1 MGP_C3HHeJ_G0028112.1 mouse_genomes_project 4 86428319 86476180 + MGP_C3HHeJ_P0065888 Acer2 protein_coding protein_coding MGP_C3HHeJ_T0065889.1 MGP_C3HHeJ_G0028112.1 mouse_genomes_project 4 86428337 86490002 + Acer2 protein_coding processed_transcript MGP_C3HHeJ_T0065890.1 MGP_C3HHeJ_G0028112.1 mouse_genomes_project 4 86428337 86476180 + MGP_C3HHeJ_P0065890 Acer2 protein_coding protein_coding MGP_C3HHeJ_T0065891.1 MGP_C3HHeJ_G0028112.1 mouse_genomes_project 4 86486891 86492337 + Acer2 protein_coding processed_transcript MGP_C3HHeJ_T0014519.1 MGP_C3HHeJ_G0012623.1 mouse_genomes_project 4 105434117 105435454 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102015.1 MGP_C3HHeJ_G0039980.1 mouse_genomes_project 4 122066182 122068828 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100670.1 MGP_C3HHeJ_G0038864.1 mouse_genomes_project 4 131078032 131078105 + Snord85 snoRNA snoRNA MGP_C3HHeJ_T0102028.1 MGP_C3HHeJ_G0039993.1 mouse_genomes_project 4 145823423 145823876 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0067077.1 MGP_C3HHeJ_G0028379.1 mouse_genomes_project 4 119375841 119403005 + MGP_C3HHeJ_P0067077 protein_coding protein_coding MGP_C3HHeJ_T0017815.1 MGP_C3HHeJ_G0015301.1 mouse_genomes_project 4 30790636 30797808 - Gm11934 processed_transcript processed_transcript MGP_C3HHeJ_T0014264.1 MGP_C3HHeJ_G0012368.1 mouse_genomes_project 4 13158569 13159636 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014241.1 MGP_C3HHeJ_G0012345.1 mouse_genomes_project 4 7312725 7313016 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010493.1 MGP_C3HHeJ_G0008626.1 mouse_genomes_project 4 19835276 19835379 + Gm24078 miRNA miRNA MGP_C3HHeJ_T0067960.1 MGP_C3HHeJ_G0028578.1 mouse_genomes_project 4 133332372 133363666 - MGP_C3HHeJ_P0067960 Stx12 protein_coding protein_coding MGP_C3HHeJ_T0067961.1 MGP_C3HHeJ_G0028578.1 mouse_genomes_project 4 133335917 133342116 - Stx12 protein_coding processed_transcript MGP_C3HHeJ_T0099407.1 MGP_C3HHeJ_G0037601.1 mouse_genomes_project 4 150409444 150409596 - Gm23303 snRNA snRNA MGP_C3HHeJ_T0101205.1 MGP_C3HHeJ_G0039342.1 mouse_genomes_project 4 6655643 6657078 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101206.1 MGP_C3HHeJ_G0039342.1 mouse_genomes_project 4 6656318 6657316 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0001370.1 MGP_C3HHeJ_G0001301.1 mouse_genomes_project 4 3033209 3033484 + TEC TEC MGP_C3HHeJ_T0068172.1 MGP_C3HHeJ_G0028627.1 mouse_genomes_project 4 135138018 135147697 - MGP_C3HHeJ_P0068172 Mtfr1l protein_coding protein_coding MGP_C3HHeJ_T0068173.1 MGP_C3HHeJ_G0028627.1 mouse_genomes_project 4 135138025 135147816 - MGP_C3HHeJ_P0068173 Mtfr1l protein_coding protein_coding MGP_C3HHeJ_T0068174.1 MGP_C3HHeJ_G0028627.1 mouse_genomes_project 4 135138032 135147727 - MGP_C3HHeJ_P0068174 Mtfr1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068175.1 MGP_C3HHeJ_G0028627.1 mouse_genomes_project 4 135140830 135147687 - Mtfr1l protein_coding retained_intron MGP_C3HHeJ_T0068176.1 MGP_C3HHeJ_G0028627.1 mouse_genomes_project 4 135141571 135147525 - MGP_C3HHeJ_P0068176 Mtfr1l protein_coding protein_coding MGP_C3HHeJ_T0068177.1 MGP_C3HHeJ_G0028627.1 mouse_genomes_project 4 135141606 135147816 - MGP_C3HHeJ_P0068177 Mtfr1l protein_coding protein_coding MGP_C3HHeJ_T0068178.1 MGP_C3HHeJ_G0028627.1 mouse_genomes_project 4 135141678 135147473 - Mtfr1l protein_coding retained_intron MGP_C3HHeJ_T0068666.1 MGP_C3HHeJ_G0028744.1 mouse_genomes_project 4 142554613 142559144 + MGP_C3HHeJ_P0068666 Hspb7 protein_coding protein_coding MGP_C3HHeJ_T0069129.1 MGP_C3HHeJ_G0028870.1 mouse_genomes_project 4 154196852 154204740 - MGP_C3HHeJ_P0069129 Zbtb48 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069130.1 MGP_C3HHeJ_G0028870.1 mouse_genomes_project 4 154196852 154204740 - MGP_C3HHeJ_P0069130 Zbtb48 protein_coding protein_coding MGP_C3HHeJ_T0069131.1 MGP_C3HHeJ_G0028870.1 mouse_genomes_project 4 154196854 154204750 - Zbtb48 protein_coding retained_intron MGP_C3HHeJ_T0069132.1 MGP_C3HHeJ_G0028870.1 mouse_genomes_project 4 154196878 154197695 - Zbtb48 protein_coding processed_transcript MGP_C3HHeJ_T0069133.1 MGP_C3HHeJ_G0028870.1 mouse_genomes_project 4 154198187 154199185 - Zbtb48 protein_coding processed_transcript MGP_C3HHeJ_T0069134.1 MGP_C3HHeJ_G0028870.1 mouse_genomes_project 4 154198670 154203523 - MGP_C3HHeJ_P0069134 Zbtb48 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069135.1 MGP_C3HHeJ_G0028870.1 mouse_genomes_project 4 154199564 154203126 - Zbtb48 protein_coding retained_intron MGP_C3HHeJ_T0069136.1 MGP_C3HHeJ_G0028870.1 mouse_genomes_project 4 154203556 154204716 - MGP_C3HHeJ_P0069136 Zbtb48 protein_coding protein_coding MGP_C3HHeJ_T0017848.1 MGP_C3HHeJ_G0015324.1 mouse_genomes_project 4 103547113 103558877 - Gm12720 processed_transcript processed_transcript MGP_C3HHeJ_T0007878.1 MGP_C3HHeJ_G0006431.1 mouse_genomes_project 4 129346140 129347960 + Gm15906 lincRNA lincRNA MGP_C3HHeJ_T0065975.1 MGP_C3HHeJ_G0028145.1 mouse_genomes_project 4 94365412 94418024 + MGP_C3HHeJ_P0065975 Ift74 protein_coding protein_coding MGP_C3HHeJ_T0065976.1 MGP_C3HHeJ_G0028145.1 mouse_genomes_project 4 94365412 94454283 + MGP_C3HHeJ_P0065976 Ift74 protein_coding protein_coding MGP_C3HHeJ_T0065979.1 MGP_C3HHeJ_G0028145.1 mouse_genomes_project 4 94434901 94448119 + Ift74 protein_coding processed_transcript MGP_C3HHeJ_T0014482.1 MGP_C3HHeJ_G0012586.1 mouse_genomes_project 4 91449165 91450497 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017828.1 MGP_C3HHeJ_G0015310.1 mouse_genomes_project 4 56426638 56432791 - Gm12526 processed_transcript processed_transcript MGP_C3HHeJ_T0014338.1 MGP_C3HHeJ_G0012442.1 mouse_genomes_project 4 32513263 32513605 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064612.1 MGP_C3HHeJ_G0027822.1 mouse_genomes_project 4 31464395 31475245 + Cnr1 protein_coding processed_transcript MGP_C3HHeJ_T0064613.1 MGP_C3HHeJ_G0027822.1 mouse_genomes_project 4 31464434 31488840 + MGP_C3HHeJ_P0064613 Cnr1 protein_coding protein_coding MGP_C3HHeJ_T0064614.1 MGP_C3HHeJ_G0027822.1 mouse_genomes_project 4 31466004 31488828 + MGP_C3HHeJ_P0064614 Cnr1 protein_coding protein_coding MGP_C3HHeJ_T0068898.1 MGP_C3HHeJ_G0028828.1 mouse_genomes_project 4 150528835 150553547 + MGP_C3HHeJ_P0068898 Exosc10 protein_coding protein_coding MGP_C3HHeJ_T0068899.1 MGP_C3HHeJ_G0028828.1 mouse_genomes_project 4 150528837 150553536 + Exosc10 protein_coding processed_transcript MGP_C3HHeJ_T0068900.1 MGP_C3HHeJ_G0028828.1 mouse_genomes_project 4 150528861 150553539 + MGP_C3HHeJ_P0068900 Exosc10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068901.1 MGP_C3HHeJ_G0028828.1 mouse_genomes_project 4 150528868 150553547 + MGP_C3HHeJ_P0068901 Exosc10 protein_coding protein_coding MGP_C3HHeJ_T0068902.1 MGP_C3HHeJ_G0028828.1 mouse_genomes_project 4 150533313 150534404 + MGP_C3HHeJ_P0068902 Exosc10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068903.1 MGP_C3HHeJ_G0028828.1 mouse_genomes_project 4 150536588 150547713 + Exosc10 protein_coding retained_intron MGP_C3HHeJ_T0068904.1 MGP_C3HHeJ_G0028828.1 mouse_genomes_project 4 150539489 150547603 + Exosc10 protein_coding retained_intron MGP_C3HHeJ_T0068905.1 MGP_C3HHeJ_G0028828.1 mouse_genomes_project 4 150547266 150553467 + Exosc10 protein_coding processed_transcript MGP_C3HHeJ_T0099334.1 MGP_C3HHeJ_G0037528.1 mouse_genomes_project 4 28585089 28585193 - Gm25705 snRNA snRNA MGP_C3HHeJ_T0014367.1 MGP_C3HHeJ_G0012471.1 mouse_genomes_project 4 44652537 44652948 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068252.1 MGP_C3HHeJ_G0028643.1 mouse_genomes_project 4 136244334 136276060 - MGP_C3HHeJ_P0068252 Grhl3 protein_coding protein_coding MGP_C3HHeJ_T0068258.1 MGP_C3HHeJ_G0028647.1 mouse_genomes_project 4 136574643 136584910 + MGP_C3HHeJ_P0068258 Srsf10 protein_coding protein_coding MGP_C3HHeJ_T0068259.1 MGP_C3HHeJ_G0028647.1 mouse_genomes_project 4 136574774 136589463 + Srsf10 protein_coding processed_transcript MGP_C3HHeJ_T0068260.1 MGP_C3HHeJ_G0028647.1 mouse_genomes_project 4 136575008 136577688 + Srsf10 protein_coding processed_transcript MGP_C3HHeJ_T0068261.1 MGP_C3HHeJ_G0028647.1 mouse_genomes_project 4 136575028 136578118 + Srsf10 protein_coding processed_transcript MGP_C3HHeJ_T0068262.1 MGP_C3HHeJ_G0028647.1 mouse_genomes_project 4 136580674 136582548 + Srsf10 protein_coding processed_transcript MGP_C3HHeJ_T0068263.1 MGP_C3HHeJ_G0028647.1 mouse_genomes_project 4 136580706 136584538 + Srsf10 protein_coding processed_transcript MGP_C3HHeJ_T0068264.1 MGP_C3HHeJ_G0028647.1 mouse_genomes_project 4 136582179 136584581 + Srsf10 protein_coding processed_transcript MGP_C3HHeJ_T0065557.1 MGP_C3HHeJ_G0028040.1 mouse_genomes_project 4 58548651 58560158 - MGP_C3HHeJ_P0065557 Inip protein_coding protein_coding MGP_C3HHeJ_T0065558.1 MGP_C3HHeJ_G0028040.1 mouse_genomes_project 4 58550375 58560117 - Inip protein_coding processed_transcript MGP_C3HHeJ_T0065559.1 MGP_C3HHeJ_G0028040.1 mouse_genomes_project 4 58557294 58560128 - Inip protein_coding processed_transcript MGP_C3HHeJ_T0067070.1 MGP_C3HHeJ_G0028372.1 mouse_genomes_project 4 119198552 119199527 - MGP_C3HHeJ_P0067070 Olfr1342 protein_coding protein_coding MGP_C3HHeJ_T0100659.1 MGP_C3HHeJ_G0038853.1 mouse_genomes_project 4 117610968 117611039 - Snord38a snoRNA snoRNA MGP_C3HHeJ_T0065930.1 MGP_C3HHeJ_G0028123.1 mouse_genomes_project 4 88307501 88308559 - MGP_C3HHeJ_P0065930 Ifnab protein_coding protein_coding MGP_C3HHeJ_T0014659.1 MGP_C3HHeJ_G0012763.1 mouse_genomes_project 4 154344427 154344911 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007786.1 MGP_C3HHeJ_G0006361.1 mouse_genomes_project 4 67087882 67208732 + lincRNA lincRNA MGP_C3HHeJ_T0099371.1 MGP_C3HHeJ_G0037565.1 mouse_genomes_project 4 101186601 101186765 + Gm25124 snRNA snRNA MGP_C3HHeJ_T0067658.1 MGP_C3HHeJ_G0028523.1 mouse_genomes_project 4 129765281 129790468 - MGP_C3HHeJ_P0067658 protein_coding protein_coding MGP_C3HHeJ_T0067659.1 MGP_C3HHeJ_G0028523.1 mouse_genomes_project 4 129765446 129766697 - protein_coding retained_intron MGP_C3HHeJ_T0067660.1 MGP_C3HHeJ_G0028523.1 mouse_genomes_project 4 129767261 129771673 - protein_coding retained_intron MGP_C3HHeJ_T0067661.1 MGP_C3HHeJ_G0028523.1 mouse_genomes_project 4 129771373 129776551 - protein_coding retained_intron MGP_C3HHeJ_T0067662.1 MGP_C3HHeJ_G0028523.1 mouse_genomes_project 4 129771520 129773486 - protein_coding retained_intron MGP_C3HHeJ_T0067663.1 MGP_C3HHeJ_G0028523.1 mouse_genomes_project 4 129771708 129773444 - protein_coding retained_intron MGP_C3HHeJ_T0067664.1 MGP_C3HHeJ_G0028523.1 mouse_genomes_project 4 129776140 129790446 - protein_coding retained_intron MGP_C3HHeJ_T0014303.1 MGP_C3HHeJ_G0012407.1 mouse_genomes_project 4 23595564 23596291 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014596.1 MGP_C3HHeJ_G0012700.1 mouse_genomes_project 4 126906147 126906856 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066965.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118334017 118342145 + MGP_C3HHeJ_P0066965 Slc6a9 protein_coding protein_coding MGP_C3HHeJ_T0066966.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118334355 118374323 + MGP_C3HHeJ_P0066966 Slc6a9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066967.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118334407 118368360 + MGP_C3HHeJ_P0066967 Slc6a9 protein_coding protein_coding MGP_C3HHeJ_T0066968.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118334460 118356247 + Slc6a9 protein_coding processed_transcript MGP_C3HHeJ_T0066969.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118348231 118363078 + MGP_C3HHeJ_P0066969 Slc6a9 protein_coding protein_coding MGP_C3HHeJ_T0066970.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118348237 118363078 + MGP_C3HHeJ_P0066970 Slc6a9 protein_coding protein_coding MGP_C3HHeJ_T0066971.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118348408 118367490 + MGP_C3HHeJ_P0066971 Slc6a9 protein_coding protein_coding MGP_C3HHeJ_T0066972.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118354551 118356503 + MGP_C3HHeJ_P0066972 Slc6a9 protein_coding protein_coding MGP_C3HHeJ_T0066973.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118354603 118355087 + Slc6a9 protein_coding processed_transcript MGP_C3HHeJ_T0066985.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118373212 118374325 + Slc6a9 protein_coding retained_intron MGP_C3HHeJ_T0066526.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109183123 109243737 + MGP_C3HHeJ_P0066526 Nrd1 protein_coding protein_coding MGP_C3HHeJ_T0066527.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109183123 109243737 + MGP_C3HHeJ_P0066527 Nrd1 protein_coding protein_coding MGP_C3HHeJ_T0066528.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109183238 109243122 + MGP_C3HHeJ_P0066528 Nrd1 protein_coding protein_coding MGP_C3HHeJ_T0066529.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109198960 109226615 + MGP_C3HHeJ_P0066529 Nrd1 protein_coding protein_coding MGP_C3HHeJ_T0066530.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109206231 109214725 + Nrd1 protein_coding retained_intron MGP_C3HHeJ_T0066531.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109214419 109225381 + Nrd1 protein_coding retained_intron MGP_C3HHeJ_T0066532.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109221720 109226077 + Nrd1 protein_coding retained_intron MGP_C3HHeJ_T0066533.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109222165 109243436 + Nrd1 protein_coding processed_transcript MGP_C3HHeJ_T0066534.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109228245 109232859 + Nrd1 protein_coding processed_transcript MGP_C3HHeJ_T0066535.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109236914 109238837 + Nrd1 protein_coding retained_intron MGP_C3HHeJ_T0066536.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109240895 109241762 + Nrd1 protein_coding retained_intron MGP_C3HHeJ_T0066537.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109240952 109242641 + Nrd1 protein_coding retained_intron MGP_C3HHeJ_T0100601.1 MGP_C3HHeJ_G0038795.1 mouse_genomes_project 4 2337221 2337347 - Gm24337 snoRNA snoRNA MGP_C3HHeJ_T0067414.1 MGP_C3HHeJ_G0028469.1 mouse_genomes_project 4 126206081 126218559 - Sh3d21 protein_coding processed_transcript MGP_C3HHeJ_T0067415.1 MGP_C3HHeJ_G0028469.1 mouse_genomes_project 4 126206081 126218520 - MGP_C3HHeJ_P0067415 Sh3d21 protein_coding protein_coding MGP_C3HHeJ_T0067416.1 MGP_C3HHeJ_G0028469.1 mouse_genomes_project 4 126206081 126219385 - MGP_C3HHeJ_P0067416 Sh3d21 protein_coding protein_coding MGP_C3HHeJ_T0067417.1 MGP_C3HHeJ_G0028469.1 mouse_genomes_project 4 126206087 126218495 - Sh3d21 protein_coding processed_transcript MGP_C3HHeJ_T0067418.1 MGP_C3HHeJ_G0028469.1 mouse_genomes_project 4 126207036 126218550 - Sh3d21 protein_coding processed_transcript MGP_C3HHeJ_T0067213.1 MGP_C3HHeJ_G0028413.1 mouse_genomes_project 4 121444762 121474156 + Rims3 protein_coding processed_transcript MGP_C3HHeJ_T0067214.1 MGP_C3HHeJ_G0028413.1 mouse_genomes_project 4 121444765 121489288 + MGP_C3HHeJ_P0067214 Rims3 protein_coding protein_coding MGP_C3HHeJ_T0067215.1 MGP_C3HHeJ_G0028413.1 mouse_genomes_project 4 121451697 121489288 + MGP_C3HHeJ_P0067215 Rims3 protein_coding protein_coding MGP_C3HHeJ_T0067216.1 MGP_C3HHeJ_G0028413.1 mouse_genomes_project 4 121467535 121484269 + MGP_C3HHeJ_P0067216 Rims3 protein_coding protein_coding MGP_C3HHeJ_T0069154.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154304903 154338503 - MGP_C3HHeJ_P0069154 Espn protein_coding protein_coding MGP_C3HHeJ_T0069155.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154304908 154338667 - MGP_C3HHeJ_P0069155 Espn protein_coding protein_coding MGP_C3HHeJ_T0069156.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305429 154313492 - MGP_C3HHeJ_P0069156 Espn protein_coding protein_coding MGP_C3HHeJ_T0069157.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305440 154338518 - MGP_C3HHeJ_P0069157 Espn protein_coding protein_coding MGP_C3HHeJ_T0069158.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305442 154316436 - MGP_C3HHeJ_P0069158 Espn protein_coding protein_coding MGP_C3HHeJ_T0069159.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305454 154316908 - Espn protein_coding processed_transcript MGP_C3HHeJ_T0069160.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305693 154320853 - MGP_C3HHeJ_P0069160 Espn protein_coding protein_coding MGP_C3HHeJ_T0069161.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305693 154320896 - MGP_C3HHeJ_P0069161 Espn protein_coding protein_coding MGP_C3HHeJ_T0069162.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305693 154320853 - MGP_C3HHeJ_P0069162 Espn protein_coding protein_coding MGP_C3HHeJ_T0069163.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305693 154320896 - MGP_C3HHeJ_P0069163 Espn protein_coding protein_coding MGP_C3HHeJ_T0069164.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305693 154320896 - MGP_C3HHeJ_P0069164 Espn protein_coding protein_coding MGP_C3HHeJ_T0069165.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305693 154320896 - MGP_C3HHeJ_P0069165 Espn protein_coding protein_coding MGP_C3HHeJ_T0069166.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305693 154320853 - MGP_C3HHeJ_P0069166 Espn protein_coding protein_coding MGP_C3HHeJ_T0069167.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305693 154320853 - MGP_C3HHeJ_P0069167 Espn protein_coding protein_coding MGP_C3HHeJ_T0069168.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305704 154316412 - Espn protein_coding processed_transcript MGP_C3HHeJ_T0069169.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154307471 154316437 - Espn protein_coding processed_transcript MGP_C3HHeJ_T0069170.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154308286 154335298 - MGP_C3HHeJ_P0069170 Espn protein_coding protein_coding MGP_C3HHeJ_T0069171.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154312360 154316428 - Espn protein_coding processed_transcript MGP_C3HHeJ_T0069172.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154312708 154315801 - Espn protein_coding processed_transcript MGP_C3HHeJ_T0065942.1 MGP_C3HHeJ_G0028134.1 mouse_genomes_project 4 88973811 88981639 - MGP_C3HHeJ_P0065942 Cdkn2a protein_coding protein_coding MGP_C3HHeJ_T0065943.1 MGP_C3HHeJ_G0028134.1 mouse_genomes_project 4 88973881 88993381 - MGP_C3HHeJ_P0065943 Cdkn2a protein_coding protein_coding MGP_C3HHeJ_T0068194.1 MGP_C3HHeJ_G0028633.1 mouse_genomes_project 4 135529318 135550246 - MGP_C3HHeJ_P0068194 Tmem50a protein_coding protein_coding MGP_C3HHeJ_T0068195.1 MGP_C3HHeJ_G0028633.1 mouse_genomes_project 4 135529860 135550237 - MGP_C3HHeJ_P0068195 Tmem50a protein_coding protein_coding MGP_C3HHeJ_T0068935.1 MGP_C3HHeJ_G0028833.1 mouse_genomes_project 4 150798445 150944166 + MGP_C3HHeJ_P0068935 Casz1 protein_coding protein_coding MGP_C3HHeJ_T0068936.1 MGP_C3HHeJ_G0028833.1 mouse_genomes_project 4 150798445 150953903 + MGP_C3HHeJ_P0068936 Casz1 protein_coding protein_coding MGP_C3HHeJ_T0068937.1 MGP_C3HHeJ_G0028833.1 mouse_genomes_project 4 150798481 150834806 + Casz1 protein_coding processed_transcript MGP_C3HHeJ_T0068938.1 MGP_C3HHeJ_G0028833.1 mouse_genomes_project 4 150887771 150890326 + Casz1 protein_coding processed_transcript MGP_C3HHeJ_T0068939.1 MGP_C3HHeJ_G0028833.1 mouse_genomes_project 4 150899483 150931938 + MGP_C3HHeJ_P0068939 Casz1 protein_coding protein_coding MGP_C3HHeJ_T0068940.1 MGP_C3HHeJ_G0028833.1 mouse_genomes_project 4 150932155 150939550 + MGP_C3HHeJ_P0068940 Casz1 protein_coding protein_coding MGP_C3HHeJ_T0066509.1 MGP_C3HHeJ_G0028255.1 mouse_genomes_project 4 108797838 108944026 - MGP_C3HHeJ_P0066509 protein_coding protein_coding MGP_C3HHeJ_T0066510.1 MGP_C3HHeJ_G0028255.1 mouse_genomes_project 4 108797838 108944311 - MGP_C3HHeJ_P0066510 protein_coding protein_coding MGP_C3HHeJ_T0066511.1 MGP_C3HHeJ_G0028255.1 mouse_genomes_project 4 108799627 108886556 - MGP_C3HHeJ_P0066511 protein_coding protein_coding MGP_C3HHeJ_T0014570.1 MGP_C3HHeJ_G0012674.1 mouse_genomes_project 4 120053183 120053597 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065510.1 MGP_C3HHeJ_G0028027.1 mouse_genomes_project 4 57453098 57454040 - MGP_C3HHeJ_P0065510 Olfr267 protein_coding protein_coding MGP_C3HHeJ_T0014288.1 MGP_C3HHeJ_G0012392.1 mouse_genomes_project 4 19616514 19617086 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066418.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108009830 108019403 + MGP_C3HHeJ_P0066418 0610037L13Rik protein_coding protein_coding MGP_C3HHeJ_T0066419.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108009842 108016999 + MGP_C3HHeJ_P0066419 0610037L13Rik protein_coding protein_coding MGP_C3HHeJ_T0066420.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108009866 108017281 + 0610037L13Rik protein_coding processed_transcript MGP_C3HHeJ_T0066421.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108009880 108017137 + MGP_C3HHeJ_P0066421 0610037L13Rik protein_coding protein_coding MGP_C3HHeJ_T0066422.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108009883 108015880 + MGP_C3HHeJ_P0066422 0610037L13Rik protein_coding protein_coding MGP_C3HHeJ_T0066423.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108009886 108015365 + MGP_C3HHeJ_P0066423 0610037L13Rik protein_coding protein_coding MGP_C3HHeJ_T0066424.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108009915 108017137 + MGP_C3HHeJ_P0066424 0610037L13Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066425.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108009916 108017821 + MGP_C3HHeJ_P0066425 0610037L13Rik protein_coding protein_coding MGP_C3HHeJ_T0066426.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108009925 108012022 + MGP_C3HHeJ_P0066426 0610037L13Rik protein_coding protein_coding MGP_C3HHeJ_T0066427.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108010136 108017183 + 0610037L13Rik protein_coding processed_transcript MGP_C3HHeJ_T0066428.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108010244 108017076 + 0610037L13Rik protein_coding processed_transcript MGP_C3HHeJ_T0066429.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108010257 108017137 + 0610037L13Rik protein_coding processed_transcript MGP_C3HHeJ_T0066430.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108013192 108017072 + 0610037L13Rik protein_coding retained_intron MGP_C3HHeJ_T0066431.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108013388 108017137 + MGP_C3HHeJ_P0066431 0610037L13Rik protein_coding protein_coding MGP_C3HHeJ_T0097902.1 MGP_C3HHeJ_G0036114.1 mouse_genomes_project 4 34602092 34602430 - pseudogene pseudogene MGP_C3HHeJ_T0010517.1 MGP_C3HHeJ_G0008650.1 mouse_genomes_project 4 87739324 87739410 + Mir491 miRNA miRNA MGP_C3HHeJ_T0004347.1 MGP_C3HHeJ_G0003785.1 mouse_genomes_project 4 8299150 8300528 - Gm11831 antisense antisense MGP_C3HHeJ_T0067376.1 MGP_C3HHeJ_G0028458.1 mouse_genomes_project 4 125072857 125086079 - MGP_C3HHeJ_P0067376 Dnali1 protein_coding protein_coding MGP_C3HHeJ_T0014479.1 MGP_C3HHeJ_G0012583.1 mouse_genomes_project 4 90587403 90587898 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067368.1 MGP_C3HHeJ_G0028456.1 mouse_genomes_project 4 125001048 125023707 + MGP_C3HHeJ_P0067368 Rspo1 protein_coding protein_coding MGP_C3HHeJ_T0067369.1 MGP_C3HHeJ_G0028456.1 mouse_genomes_project 4 125022087 125023133 + Rspo1 protein_coding processed_transcript MGP_C3HHeJ_T0004395.1 MGP_C3HHeJ_G0003826.1 mouse_genomes_project 4 82761279 82773607 - Gm11413 antisense antisense MGP_C3HHeJ_T0017840.1 MGP_C3HHeJ_G0015318.1 mouse_genomes_project 4 94206685 94223773 - Gm12655 processed_transcript processed_transcript MGP_C3HHeJ_T0017841.1 MGP_C3HHeJ_G0015318.1 mouse_genomes_project 4 94207763 94223760 - Gm12655 processed_transcript processed_transcript MGP_C3HHeJ_T0007801.1 MGP_C3HHeJ_G0006374.1 mouse_genomes_project 4 86899471 86902380 + Gm12600 lincRNA lincRNA MGP_C3HHeJ_T0004476.1 MGP_C3HHeJ_G0003884.1 mouse_genomes_project 4 134416402 134421102 + Gm12977 antisense antisense MGP_C3HHeJ_T0004477.1 MGP_C3HHeJ_G0003884.1 mouse_genomes_project 4 134417046 134420328 + Gm12977 antisense antisense MGP_C3HHeJ_T0064581.1 MGP_C3HHeJ_G0027812.1 mouse_genomes_project 4 30238398 30239526 + MGP_C3HHeJ_P0064581 Lyrm2 protein_coding protein_coding MGP_C3HHeJ_T0064582.1 MGP_C3HHeJ_G0027812.1 mouse_genomes_project 4 30238424 30239702 + Lyrm2 protein_coding retained_intron MGP_C3HHeJ_T0064583.1 MGP_C3HHeJ_G0027812.1 mouse_genomes_project 4 30238427 30239118 + Lyrm2 protein_coding retained_intron MGP_C3HHeJ_T0100642.1 MGP_C3HHeJ_G0038836.1 mouse_genomes_project 4 73756696 73756834 + Gm26379 snoRNA snoRNA MGP_C3HHeJ_T0100667.1 MGP_C3HHeJ_G0038861.1 mouse_genomes_project 4 123207549 123207680 + Gm22154 snoRNA snoRNA MGP_C3HHeJ_T0064761.1 MGP_C3HHeJ_G0027858.1 mouse_genomes_project 4 39368075 39441571 - MGP_C3HHeJ_P0064761 Kif24 protein_coding protein_coding MGP_C3HHeJ_T0064762.1 MGP_C3HHeJ_G0027858.1 mouse_genomes_project 4 39368941 39441579 - MGP_C3HHeJ_P0064762 Kif24 protein_coding protein_coding MGP_C3HHeJ_T0064763.1 MGP_C3HHeJ_G0027858.1 mouse_genomes_project 4 39372515 39391215 - Kif24 protein_coding processed_transcript MGP_C3HHeJ_T0064764.1 MGP_C3HHeJ_G0027858.1 mouse_genomes_project 4 39384782 39386268 - Kif24 protein_coding processed_transcript MGP_C3HHeJ_T0064765.1 MGP_C3HHeJ_G0027858.1 mouse_genomes_project 4 39394984 39441571 - Kif24 protein_coding processed_transcript MGP_C3HHeJ_T0064766.1 MGP_C3HHeJ_G0027858.1 mouse_genomes_project 4 39410551 39441577 - MGP_C3HHeJ_P0064766 Kif24 protein_coding protein_coding MGP_C3HHeJ_T0064767.1 MGP_C3HHeJ_G0027858.1 mouse_genomes_project 4 39429358 39441577 - Kif24 protein_coding processed_transcript MGP_C3HHeJ_T0065345.1 MGP_C3HHeJ_G0027980.1 mouse_genomes_project 4 47912318 47916800 - MGP_C3HHeJ_P0065345 protein_coding protein_coding MGP_C3HHeJ_T0065347.1 MGP_C3HHeJ_G0027980.1 mouse_genomes_project 4 47916631 47938979 - MGP_C3HHeJ_P0065347 protein_coding protein_coding MGP_C3HHeJ_T0065348.1 MGP_C3HHeJ_G0027980.1 mouse_genomes_project 4 47925674 47938946 - protein_coding processed_transcript MGP_C3HHeJ_T0014483.1 MGP_C3HHeJ_G0012587.1 mouse_genomes_project 4 91534086 91538342 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014474.1 MGP_C3HHeJ_G0012578.1 mouse_genomes_project 4 89117422 89119850 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065487.1 MGP_C3HHeJ_G0028023.1 mouse_genomes_project 4 56652577 56679075 - Txndc8 protein_coding processed_transcript MGP_C3HHeJ_T0065488.1 MGP_C3HHeJ_G0028023.1 mouse_genomes_project 4 56652577 56679174 - MGP_C3HHeJ_P0065488 Txndc8 protein_coding protein_coding MGP_C3HHeJ_T0065489.1 MGP_C3HHeJ_G0028023.1 mouse_genomes_project 4 56652579 56668847 - MGP_C3HHeJ_P0065489 Txndc8 protein_coding protein_coding MGP_C3HHeJ_T0067532.1 MGP_C3HHeJ_G0028492.1 mouse_genomes_project 4 127447630 127450249 - MGP_C3HHeJ_P0067532 Gja4 protein_coding protein_coding MGP_C3HHeJ_T0065228.1 MGP_C3HHeJ_G0027950.1 mouse_genomes_project 4 44272503 44344665 + MGP_C3HHeJ_P0065228 Tdrd7 protein_coding protein_coding MGP_C3HHeJ_T0065229.1 MGP_C3HHeJ_G0027950.1 mouse_genomes_project 4 44279396 44344665 + MGP_C3HHeJ_P0065229 Tdrd7 protein_coding protein_coding MGP_C3HHeJ_T0065230.1 MGP_C3HHeJ_G0027950.1 mouse_genomes_project 4 44279997 44296145 + Tdrd7 protein_coding processed_transcript MGP_C3HHeJ_T0065231.1 MGP_C3HHeJ_G0027950.1 mouse_genomes_project 4 44298642 44314056 + Tdrd7 protein_coding processed_transcript MGP_C3HHeJ_T0065232.1 MGP_C3HHeJ_G0027950.1 mouse_genomes_project 4 44335219 44344665 + Tdrd7 protein_coding processed_transcript MGP_C3HHeJ_T0064756.1 MGP_C3HHeJ_G0027857.1 mouse_genomes_project 4 39320734 39367856 + MGP_C3HHeJ_P0064756 Ubap1 protein_coding protein_coding MGP_C3HHeJ_T0064757.1 MGP_C3HHeJ_G0027857.1 mouse_genomes_project 4 39320734 39367097 + MGP_C3HHeJ_P0064757 Ubap1 protein_coding protein_coding MGP_C3HHeJ_T0064758.1 MGP_C3HHeJ_G0027857.1 mouse_genomes_project 4 39320786 39347391 + Ubap1 protein_coding processed_transcript MGP_C3HHeJ_T0064759.1 MGP_C3HHeJ_G0027857.1 mouse_genomes_project 4 39347353 39356741 + Ubap1 protein_coding processed_transcript MGP_C3HHeJ_T0064760.1 MGP_C3HHeJ_G0027857.1 mouse_genomes_project 4 39347830 39366023 + MGP_C3HHeJ_P0064760 Ubap1 protein_coding protein_coding MGP_C3HHeJ_T0007749.1 MGP_C3HHeJ_G0006331.1 mouse_genomes_project 4 41924575 41929087 + lincRNA lincRNA MGP_C3HHeJ_T0014644.1 MGP_C3HHeJ_G0012748.1 mouse_genomes_project 4 146319216 146320027 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067074.1 MGP_C3HHeJ_G0028376.1 mouse_genomes_project 4 119263954 119264896 - MGP_C3HHeJ_P0067074 Olfr1338 protein_coding protein_coding MGP_C3HHeJ_T0065400.1 MGP_C3HHeJ_G0028000.1 mouse_genomes_project 4 51995834 52108473 + MGP_C3HHeJ_P0065400 Slc44a1 protein_coding protein_coding MGP_C3HHeJ_T0065401.1 MGP_C3HHeJ_G0028000.1 mouse_genomes_project 4 51995834 52185801 + MGP_C3HHeJ_P0065401 Slc44a1 protein_coding protein_coding MGP_C3HHeJ_T0065402.1 MGP_C3HHeJ_G0028000.1 mouse_genomes_project 4 51997853 52086916 + Slc44a1 protein_coding processed_transcript MGP_C3HHeJ_T0065403.1 MGP_C3HHeJ_G0028000.1 mouse_genomes_project 4 51997866 52131333 + MGP_C3HHeJ_P0065403 Slc44a1 protein_coding protein_coding MGP_C3HHeJ_T0065404.1 MGP_C3HHeJ_G0028000.1 mouse_genomes_project 4 51997866 52126975 + MGP_C3HHeJ_P0065404 Slc44a1 protein_coding protein_coding MGP_C3HHeJ_T0065405.1 MGP_C3HHeJ_G0028000.1 mouse_genomes_project 4 52159628 52185310 + Slc44a1 protein_coding processed_transcript MGP_C3HHeJ_T0007943.1 MGP_C3HHeJ_G0006479.1 mouse_genomes_project 4 152781586 152798374 - Gm16079 lincRNA lincRNA MGP_C3HHeJ_T0065939.1 MGP_C3HHeJ_G0028132.1 mouse_genomes_project 4 88528690 88529354 - MGP_C3HHeJ_P0065939 Ifne protein_coding protein_coding MGP_C3HHeJ_T0069437.1 MGP_C3HHeJ_G0028921.1 mouse_genomes_project 4 157958239 157963571 + Cdk11b protein_coding processed_transcript MGP_C3HHeJ_T0069438.1 MGP_C3HHeJ_G0028921.1 mouse_genomes_project 4 157958254 157983313 + MGP_C3HHeJ_P0069438 Cdk11b protein_coding protein_coding MGP_C3HHeJ_T0069439.1 MGP_C3HHeJ_G0028921.1 mouse_genomes_project 4 157958265 157959082 + Cdk11b protein_coding processed_transcript MGP_C3HHeJ_T0069440.1 MGP_C3HHeJ_G0028921.1 mouse_genomes_project 4 157958268 157983313 + MGP_C3HHeJ_P0069440 Cdk11b protein_coding protein_coding MGP_C3HHeJ_T0069441.1 MGP_C3HHeJ_G0028921.1 mouse_genomes_project 4 157958295 157983313 + MGP_C3HHeJ_P0069441 Cdk11b protein_coding protein_coding MGP_C3HHeJ_T0069442.1 MGP_C3HHeJ_G0028921.1 mouse_genomes_project 4 157967400 157973056 + Cdk11b protein_coding processed_transcript MGP_C3HHeJ_T0069443.1 MGP_C3HHeJ_G0028921.1 mouse_genomes_project 4 157980577 157981780 + Cdk11b protein_coding processed_transcript MGP_C3HHeJ_T0069444.1 MGP_C3HHeJ_G0028921.1 mouse_genomes_project 4 157980742 157981667 + Cdk11b protein_coding processed_transcript MGP_C3HHeJ_T0007810.1 MGP_C3HHeJ_G0006381.1 mouse_genomes_project 4 93220986 93425811 - Gm12649 lincRNA lincRNA MGP_C3HHeJ_T0007886.1 MGP_C3HHeJ_G0006435.1 mouse_genomes_project 4 130251945 130255098 + 1700003M07Rik lincRNA lincRNA MGP_C3HHeJ_T0007887.1 MGP_C3HHeJ_G0006435.1 mouse_genomes_project 4 130252379 130255235 + 1700003M07Rik lincRNA lincRNA MGP_C3HHeJ_T0065609.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61473179 61573722 + MGP_C3HHeJ_P0065609 Rgs3 protein_coding protein_coding MGP_C3HHeJ_T0065610.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61492586 61571321 + MGP_C3HHeJ_P0065610 Rgs3 protein_coding protein_coding MGP_C3HHeJ_T0065611.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61514186 61536019 + Rgs3 protein_coding processed_transcript MGP_C3HHeJ_T0065612.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61530382 61623154 + MGP_C3HHeJ_P0065612 Rgs3 protein_coding protein_coding MGP_C3HHeJ_T0065613.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61530444 61573722 + MGP_C3HHeJ_P0065613 Rgs3 protein_coding protein_coding MGP_C3HHeJ_T0065614.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61535633 61543409 + Rgs3 protein_coding processed_transcript MGP_C3HHeJ_T0065615.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61535811 61538621 + Rgs3 protein_coding retained_intron MGP_C3HHeJ_T0065616.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61548283 61614780 + Rgs3 protein_coding retained_intron MGP_C3HHeJ_T0065617.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61548283 61623154 + Rgs3 protein_coding retained_intron MGP_C3HHeJ_T0065618.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61566455 61573722 + Rgs3 protein_coding retained_intron MGP_C3HHeJ_T0065619.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61587934 61623154 + MGP_C3HHeJ_P0065619 Rgs3 protein_coding protein_coding MGP_C3HHeJ_T0065620.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61616325 61623154 + Rgs3 protein_coding retained_intron MGP_C3HHeJ_T0065621.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61616539 61618013 + Rgs3 protein_coding processed_transcript MGP_C3HHeJ_T0065622.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61616719 61624137 + MGP_C3HHeJ_P0065622 Rgs3 protein_coding protein_coding MGP_C3HHeJ_T0100623.1 MGP_C3HHeJ_G0038817.1 mouse_genomes_project 4 47326524 47326649 + Gm23746 snoRNA snoRNA MGP_C3HHeJ_T0100663.1 MGP_C3HHeJ_G0038857.1 mouse_genomes_project 4 119499893 119500018 + Gm24352 snoRNA snoRNA MGP_C3HHeJ_T0065884.1 MGP_C3HHeJ_G0028111.1 mouse_genomes_project 4 86407219 86410813 - MGP_C3HHeJ_P0065884 Rps6 protein_coding protein_coding MGP_C3HHeJ_T0065885.1 MGP_C3HHeJ_G0028111.1 mouse_genomes_project 4 86407345 86410746 - Rps6 protein_coding processed_transcript MGP_C3HHeJ_T0065886.1 MGP_C3HHeJ_G0028111.1 mouse_genomes_project 4 86408225 86410755 - Rps6 protein_coding processed_transcript MGP_C3HHeJ_T0065887.1 MGP_C3HHeJ_G0028111.1 mouse_genomes_project 4 86408335 86410733 - Rps6 protein_coding processed_transcript MGP_C3HHeJ_T0064901.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41169894 41177964 - Fancg protein_coding retained_intron MGP_C3HHeJ_T0064902.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41169894 41177831 - MGP_C3HHeJ_P0064902 Fancg protein_coding protein_coding MGP_C3HHeJ_T0064903.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41170473 41171484 - Fancg protein_coding retained_intron MGP_C3HHeJ_T0064904.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41170562 41174001 - Fancg protein_coding processed_transcript MGP_C3HHeJ_T0064905.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41170811 41174046 - Fancg protein_coding processed_transcript MGP_C3HHeJ_T0064906.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41171464 41174314 - Fancg protein_coding processed_transcript MGP_C3HHeJ_T0064907.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41172763 41176633 - Fancg protein_coding processed_transcript MGP_C3HHeJ_T0064908.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41176546 41177646 - Fancg protein_coding retained_intron MGP_C3HHeJ_T0064909.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41176637 41177698 - Fancg protein_coding retained_intron MGP_C3HHeJ_T0064910.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41177518 41177982 - Fancg protein_coding processed_transcript MGP_C3HHeJ_T0014504.1 MGP_C3HHeJ_G0012608.1 mouse_genomes_project 4 99538157 99538863 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069496.1 MGP_C3HHeJ_G0028934.1 mouse_genomes_project 4 158179594 158182042 + MGP_C3HHeJ_P0069496 Mxra8 protein_coding protein_coding MGP_C3HHeJ_T0069497.1 MGP_C3HHeJ_G0028934.1 mouse_genomes_project 4 158179640 158183962 + MGP_C3HHeJ_P0069497 Mxra8 protein_coding protein_coding MGP_C3HHeJ_T0069498.1 MGP_C3HHeJ_G0028934.1 mouse_genomes_project 4 158179744 158181193 + Mxra8 protein_coding retained_intron MGP_C3HHeJ_T0069499.1 MGP_C3HHeJ_G0028934.1 mouse_genomes_project 4 158182223 158182830 + Mxra8 protein_coding retained_intron MGP_C3HHeJ_T0069500.1 MGP_C3HHeJ_G0028934.1 mouse_genomes_project 4 158182306 158183330 + Mxra8 protein_coding retained_intron MGP_C3HHeJ_T0069501.1 MGP_C3HHeJ_G0028934.1 mouse_genomes_project 4 158182327 158183447 + Mxra8 protein_coding retained_intron MGP_C3HHeJ_T0069502.1 MGP_C3HHeJ_G0028934.1 mouse_genomes_project 4 158182778 158183639 + Mxra8 protein_coding processed_transcript MGP_C3HHeJ_T0007944.1 MGP_C3HHeJ_G0006480.1 mouse_genomes_project 4 152962198 152976181 + Gm13049 lincRNA lincRNA MGP_C3HHeJ_T0069338.1 MGP_C3HHeJ_G0028906.1 mouse_genomes_project 4 157261381 157278095 + MGP_C3HHeJ_P0069338 Pank4 protein_coding protein_coding MGP_C3HHeJ_T0069339.1 MGP_C3HHeJ_G0028906.1 mouse_genomes_project 4 157261391 157278162 + MGP_C3HHeJ_P0069339 Pank4 protein_coding protein_coding MGP_C3HHeJ_T0069340.1 MGP_C3HHeJ_G0028906.1 mouse_genomes_project 4 157267237 157278113 + MGP_C3HHeJ_P0069340 Pank4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069341.1 MGP_C3HHeJ_G0028906.1 mouse_genomes_project 4 157271771 157278162 + Pank4 protein_coding retained_intron MGP_C3HHeJ_T0069342.1 MGP_C3HHeJ_G0028906.1 mouse_genomes_project 4 157273495 157276379 + Pank4 protein_coding retained_intron MGP_C3HHeJ_T0069343.1 MGP_C3HHeJ_G0028906.1 mouse_genomes_project 4 157273503 157276449 + Pank4 protein_coding retained_intron MGP_C3HHeJ_T0069344.1 MGP_C3HHeJ_G0028906.1 mouse_genomes_project 4 157273802 157278158 + Pank4 protein_coding retained_intron MGP_C3HHeJ_T0066438.1 MGP_C3HHeJ_G0028242.1 mouse_genomes_project 4 108091478 108138360 + MGP_C3HHeJ_P0066438 Slc1a7 protein_coding protein_coding MGP_C3HHeJ_T0066439.1 MGP_C3HHeJ_G0028242.1 mouse_genomes_project 4 108133840 108138354 + Slc1a7 protein_coding retained_intron MGP_C3HHeJ_T0004436.1 MGP_C3HHeJ_G0003851.1 mouse_genomes_project 4 116254102 116254362 - Gm29434 antisense antisense MGP_C3HHeJ_T0066177.1 MGP_C3HHeJ_G0028194.1 mouse_genomes_project 4 101909307 101912221 - MGP_C3HHeJ_P0066177 Gm12790 protein_coding protein_coding MGP_C3HHeJ_T0014334.1 MGP_C3HHeJ_G0012438.1 mouse_genomes_project 4 31942459 31942912 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066014.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95737632 95796553 + MGP_C3HHeJ_P0066014 Hook1 protein_coding protein_coding MGP_C3HHeJ_T0066015.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95737755 95786620 + Hook1 protein_coding processed_transcript MGP_C3HHeJ_T0066016.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95737761 95767869 + MGP_C3HHeJ_P0066016 Hook1 protein_coding protein_coding MGP_C3HHeJ_T0066017.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95744778 95793482 + Hook1 protein_coding processed_transcript MGP_C3HHeJ_T0066018.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95772196 95780665 + Hook1 protein_coding processed_transcript MGP_C3HHeJ_T0066019.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95773370 95781058 + Hook1 protein_coding processed_transcript MGP_C3HHeJ_T0066020.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95775476 95793624 + Hook1 protein_coding processed_transcript MGP_C3HHeJ_T0066021.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95784432 95790767 + Hook1 protein_coding processed_transcript MGP_C3HHeJ_T0066022.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95787323 95788817 + Hook1 protein_coding processed_transcript MGP_C3HHeJ_T0066023.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95791150 95793371 + Hook1 protein_coding processed_transcript MGP_C3HHeJ_T0066024.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95792380 95796531 + Hook1 protein_coding processed_transcript MGP_C3HHeJ_T0099380.1 MGP_C3HHeJ_G0037574.1 mouse_genomes_project 4 117473088 117473187 + Gm22335 snRNA snRNA MGP_C3HHeJ_T0067174.1 MGP_C3HHeJ_G0028403.1 mouse_genomes_project 4 120282597 120422551 + Hivep3 protein_coding processed_transcript MGP_C3HHeJ_T0067175.1 MGP_C3HHeJ_G0028403.1 mouse_genomes_project 4 120282597 120364335 + Hivep3 protein_coding processed_transcript MGP_C3HHeJ_T0067176.1 MGP_C3HHeJ_G0028403.1 mouse_genomes_project 4 120282609 120285586 + MGP_C3HHeJ_P0067176 Hivep3 protein_coding protein_coding MGP_C3HHeJ_T0067177.1 MGP_C3HHeJ_G0028403.1 mouse_genomes_project 4 120282654 120421445 + Hivep3 protein_coding processed_transcript MGP_C3HHeJ_T0067178.1 MGP_C3HHeJ_G0028403.1 mouse_genomes_project 4 120309956 120421914 + Hivep3 protein_coding processed_transcript MGP_C3HHeJ_T0067179.1 MGP_C3HHeJ_G0028403.1 mouse_genomes_project 4 120363917 120548675 + Hivep3 protein_coding processed_transcript MGP_C3HHeJ_T0067180.1 MGP_C3HHeJ_G0028403.1 mouse_genomes_project 4 120363941 120422551 + Hivep3 protein_coding processed_transcript MGP_C3HHeJ_T0067181.1 MGP_C3HHeJ_G0028403.1 mouse_genomes_project 4 120364081 120694242 + MGP_C3HHeJ_P0067181 Hivep3 protein_coding protein_coding MGP_C3HHeJ_T0067182.1 MGP_C3HHeJ_G0028403.1 mouse_genomes_project 4 120653063 120689816 + MGP_C3HHeJ_P0067182 Hivep3 protein_coding protein_coding MGP_C3HHeJ_T0068441.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139112949 139152458 + MGP_C3HHeJ_P0068441 Hp1bp3 protein_coding protein_coding MGP_C3HHeJ_T0068442.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139113570 139118652 + Hp1bp3 protein_coding processed_transcript MGP_C3HHeJ_T0068443.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139113596 139122993 + MGP_C3HHeJ_P0068443 Hp1bp3 protein_coding protein_coding MGP_C3HHeJ_T0068444.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139113597 139150923 + MGP_C3HHeJ_P0068444 Hp1bp3 protein_coding protein_coding MGP_C3HHeJ_T0068445.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139113600 139152461 + MGP_C3HHeJ_P0068445 Hp1bp3 protein_coding protein_coding MGP_C3HHeJ_T0068446.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139113604 139125718 + MGP_C3HHeJ_P0068446 Hp1bp3 protein_coding protein_coding MGP_C3HHeJ_T0068447.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139113605 139152458 + MGP_C3HHeJ_P0068447 Hp1bp3 protein_coding protein_coding MGP_C3HHeJ_T0068448.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139114097 139128004 + MGP_C3HHeJ_P0068448 Hp1bp3 protein_coding protein_coding MGP_C3HHeJ_T0068449.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139114244 139127991 + Hp1bp3 protein_coding retained_intron MGP_C3HHeJ_T0068450.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139114270 139120531 + MGP_C3HHeJ_P0068450 Hp1bp3 protein_coding protein_coding MGP_C3HHeJ_T0068451.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139125525 139148511 + MGP_C3HHeJ_P0068451 Hp1bp3 protein_coding protein_coding MGP_C3HHeJ_T0068452.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139127903 139142385 + Hp1bp3 protein_coding processed_transcript MGP_C3HHeJ_T0067646.1 MGP_C3HHeJ_G0028519.1 mouse_genomes_project 4 129706925 129737663 + MGP_C3HHeJ_P0067646 Bsdc1 protein_coding protein_coding MGP_C3HHeJ_T0067647.1 MGP_C3HHeJ_G0028519.1 mouse_genomes_project 4 129707016 129712339 + Bsdc1 protein_coding processed_transcript MGP_C3HHeJ_T0067648.1 MGP_C3HHeJ_G0028519.1 mouse_genomes_project 4 129707028 129715523 + Bsdc1 protein_coding retained_intron MGP_C3HHeJ_T0067649.1 MGP_C3HHeJ_G0028519.1 mouse_genomes_project 4 129707028 129712327 + Bsdc1 protein_coding processed_transcript MGP_C3HHeJ_T0067650.1 MGP_C3HHeJ_G0028519.1 mouse_genomes_project 4 129707031 129711312 + Bsdc1 protein_coding retained_intron MGP_C3HHeJ_T0067651.1 MGP_C3HHeJ_G0028519.1 mouse_genomes_project 4 129707180 129712339 + MGP_C3HHeJ_P0067651 Bsdc1 protein_coding protein_coding MGP_C3HHeJ_T0067652.1 MGP_C3HHeJ_G0028519.1 mouse_genomes_project 4 129709886 129710891 + Bsdc1 protein_coding processed_transcript MGP_C3HHeJ_T0067653.1 MGP_C3HHeJ_G0028519.1 mouse_genomes_project 4 129717217 129719257 + Bsdc1 protein_coding retained_intron MGP_C3HHeJ_T0065681.1 MGP_C3HHeJ_G0028075.1 mouse_genomes_project 4 65858789 65874006 + MGP_C3HHeJ_P0065681 Tlr4 protein_coding protein_coding MGP_C3HHeJ_T0065682.1 MGP_C3HHeJ_G0028075.1 mouse_genomes_project 4 65858818 65961712 + MGP_C3HHeJ_P0065682 Tlr4 protein_coding protein_coding MGP_C3HHeJ_T0065683.1 MGP_C3HHeJ_G0028075.1 mouse_genomes_project 4 65858824 65870635 + Tlr4 protein_coding processed_transcript MGP_C3HHeJ_T0065684.1 MGP_C3HHeJ_G0028075.1 mouse_genomes_project 4 65859407 65870824 + Tlr4 protein_coding processed_transcript MGP_C3HHeJ_T0010507.1 MGP_C3HHeJ_G0008640.1 mouse_genomes_project 4 43787058 43787126 - Gm22518 miRNA miRNA MGP_C3HHeJ_T0068791.1 MGP_C3HHeJ_G0028794.1 mouse_genomes_project 4 145972077 145982810 - MGP_C3HHeJ_P0068791 Aadacl3 protein_coding protein_coding MGP_C3HHeJ_T0066665.1 MGP_C3HHeJ_G0028285.1 mouse_genomes_project 4 115080369 115114655 + MGP_C3HHeJ_P0066665 Gm12830 protein_coding protein_coding MGP_C3HHeJ_T0067444.1 MGP_C3HHeJ_G0028473.1 mouse_genomes_project 4 126368098 126397434 + MGP_C3HHeJ_P0067444 Col8a2 protein_coding protein_coding MGP_C3HHeJ_T0067445.1 MGP_C3HHeJ_G0028473.1 mouse_genomes_project 4 126383691 126392889 + MGP_C3HHeJ_P0067445 Col8a2 protein_coding protein_coding MGP_C3HHeJ_T0067064.1 MGP_C3HHeJ_G0028370.1 mouse_genomes_project 4 119131693 119139037 + MGP_C3HHeJ_P0067064 Ebna1bp2 protein_coding protein_coding MGP_C3HHeJ_T0067065.1 MGP_C3HHeJ_G0028370.1 mouse_genomes_project 4 119131742 119132826 + Ebna1bp2 protein_coding processed_transcript MGP_C3HHeJ_T0067066.1 MGP_C3HHeJ_G0028370.1 mouse_genomes_project 4 119131744 119132557 + Ebna1bp2 protein_coding processed_transcript MGP_C3HHeJ_T0067067.1 MGP_C3HHeJ_G0028370.1 mouse_genomes_project 4 119132054 119135453 + MGP_C3HHeJ_P0067067 Ebna1bp2 protein_coding protein_coding MGP_C3HHeJ_T0067068.1 MGP_C3HHeJ_G0028370.1 mouse_genomes_project 4 119132120 119136879 + Ebna1bp2 protein_coding processed_transcript MGP_C3HHeJ_T0065007.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41675712 41676805 - MGP_C3HHeJ_P0065007 Arhgef39 protein_coding protein_coding MGP_C3HHeJ_T0065008.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41675712 41679266 - MGP_C3HHeJ_P0065008 Arhgef39 protein_coding protein_coding MGP_C3HHeJ_T0065009.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41675716 41679190 - Arhgef39 protein_coding processed_transcript MGP_C3HHeJ_T0065010.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41675718 41676784 - Arhgef39 protein_coding processed_transcript MGP_C3HHeJ_T0065011.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41676094 41679232 - Arhgef39 protein_coding processed_transcript MGP_C3HHeJ_T0065012.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41676391 41679179 - MGP_C3HHeJ_P0065012 Arhgef39 protein_coding protein_coding MGP_C3HHeJ_T0065013.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41676790 41678686 - Arhgef39 protein_coding processed_transcript MGP_C3HHeJ_T0065014.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41676831 41678646 - Arhgef39 protein_coding processed_transcript MGP_C3HHeJ_T0065015.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41677302 41679182 - Arhgef39 protein_coding processed_transcript MGP_C3HHeJ_T0065016.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41678717 41679232 - Arhgef39 protein_coding processed_transcript MGP_C3HHeJ_T0066087.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98808934 99009315 - MGP_C3HHeJ_P0066087 Dock7 protein_coding protein_coding MGP_C3HHeJ_T0066088.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98809117 98829947 - Dock7 protein_coding processed_transcript MGP_C3HHeJ_T0066089.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98809118 99009174 - MGP_C3HHeJ_P0066089 Dock7 protein_coding protein_coding MGP_C3HHeJ_T0066090.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98809120 98906209 - MGP_C3HHeJ_P0066090 Dock7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066091.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98809120 99009174 - MGP_C3HHeJ_P0066091 Dock7 protein_coding protein_coding MGP_C3HHeJ_T0066092.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98809521 99009174 - MGP_C3HHeJ_P0066092 Dock7 protein_coding protein_coding MGP_C3HHeJ_T0066093.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98821755 98822708 - Dock7 protein_coding retained_intron MGP_C3HHeJ_T0066094.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98821758 98825889 - Dock7 protein_coding retained_intron MGP_C3HHeJ_T0066095.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98822160 98832351 - Dock7 protein_coding processed_transcript MGP_C3HHeJ_T0066096.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98823065 98835623 - MGP_C3HHeJ_P0066096 Dock7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066097.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98831346 98906166 - MGP_C3HHeJ_P0066097 Dock7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0066098.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98832716 98840988 - Dock7 protein_coding retained_intron MGP_C3HHeJ_T0066099.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98836492 98838499 - Dock7 protein_coding processed_transcript MGP_C3HHeJ_T0066100.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98869883 98891805 - MGP_C3HHeJ_P0066100 Dock7 protein_coding protein_coding MGP_C3HHeJ_T0066101.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98871967 98891770 - MGP_C3HHeJ_P0066101 Dock7 protein_coding protein_coding MGP_C3HHeJ_T0066102.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98873204 98875534 - Dock7 protein_coding retained_intron MGP_C3HHeJ_T0066103.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98883417 98890980 - Dock7 protein_coding processed_transcript MGP_C3HHeJ_T0066104.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98890440 98938085 - MGP_C3HHeJ_P0066104 Dock7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066108.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98947114 98951463 - Dock7 protein_coding retained_intron MGP_C3HHeJ_T0014249.1 MGP_C3HHeJ_G0012353.1 mouse_genomes_project 4 8988401 8988761 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065473.1 MGP_C3HHeJ_G0028018.1 mouse_genomes_project 4 56094108 56379823 + MGP_C3HHeJ_P0065473 Palm2 protein_coding protein_coding MGP_C3HHeJ_T0065474.1 MGP_C3HHeJ_G0028018.1 mouse_genomes_project 4 56232591 56379609 + MGP_C3HHeJ_P0065474 Palm2 protein_coding protein_coding MGP_C3HHeJ_T0065476.1 MGP_C3HHeJ_G0028018.1 mouse_genomes_project 4 56232752 56378036 + MGP_C3HHeJ_P0065476 Palm2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065479.1 MGP_C3HHeJ_G0028018.1 mouse_genomes_project 4 56303658 56377296 + Palm2 protein_coding retained_intron MGP_C3HHeJ_T0007935.1 MGP_C3HHeJ_G0006471.1 mouse_genomes_project 4 143508640 143549266 - Gm13052 lincRNA lincRNA MGP_C3HHeJ_T0067704.1 MGP_C3HHeJ_G0028529.1 mouse_genomes_project 4 129868770 129872744 - MGP_C3HHeJ_P0067704 protein_coding protein_coding MGP_C3HHeJ_T0067705.1 MGP_C3HHeJ_G0028529.1 mouse_genomes_project 4 129869413 129870675 - protein_coding processed_transcript MGP_C3HHeJ_T0067706.1 MGP_C3HHeJ_G0028529.1 mouse_genomes_project 4 129870983 129872721 - protein_coding retained_intron MGP_C3HHeJ_T0067707.1 MGP_C3HHeJ_G0028529.1 mouse_genomes_project 4 129871742 129872741 - MGP_C3HHeJ_P0067707 protein_coding protein_coding MGP_C3HHeJ_T0067708.1 MGP_C3HHeJ_G0028529.1 mouse_genomes_project 4 129871886 129872725 - protein_coding processed_transcript MGP_C3HHeJ_T0067405.1 MGP_C3HHeJ_G0028467.1 mouse_genomes_project 4 126154854 126195108 + MGP_C3HHeJ_P0067405 Stk40 protein_coding protein_coding MGP_C3HHeJ_T0067406.1 MGP_C3HHeJ_G0028467.1 mouse_genomes_project 4 126154869 126195109 + MGP_C3HHeJ_P0067406 Stk40 protein_coding protein_coding MGP_C3HHeJ_T0067407.1 MGP_C3HHeJ_G0028467.1 mouse_genomes_project 4 126154898 126179215 + MGP_C3HHeJ_P0067407 Stk40 protein_coding protein_coding MGP_C3HHeJ_T0067408.1 MGP_C3HHeJ_G0028467.1 mouse_genomes_project 4 126154932 126168590 + Stk40 protein_coding processed_transcript MGP_C3HHeJ_T0067409.1 MGP_C3HHeJ_G0028467.1 mouse_genomes_project 4 126169163 126183056 + MGP_C3HHeJ_P0067409 Stk40 protein_coding protein_coding MGP_C3HHeJ_T0067410.1 MGP_C3HHeJ_G0028467.1 mouse_genomes_project 4 126182906 126186884 + Stk40 protein_coding processed_transcript MGP_C3HHeJ_T0014527.1 MGP_C3HHeJ_G0012631.1 mouse_genomes_project 4 107438713 107439729 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068622.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142183584 142196393 - Necap2 protein_coding processed_transcript MGP_C3HHeJ_T0068623.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142183584 142196408 - MGP_C3HHeJ_P0068623 Necap2 protein_coding protein_coding MGP_C3HHeJ_T0068624.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142184419 142193108 - Necap2 protein_coding retained_intron MGP_C3HHeJ_T0068625.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142184467 142185911 - Necap2 protein_coding retained_intron MGP_C3HHeJ_T0068626.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142184588 142188912 - Necap2 protein_coding retained_intron MGP_C3HHeJ_T0068627.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142184635 142190778 - MGP_C3HHeJ_P0068627 Necap2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068628.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142185281 142196408 - Necap2 protein_coding processed_transcript MGP_C3HHeJ_T0068629.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142187154 142196408 - Necap2 protein_coding processed_transcript MGP_C3HHeJ_T0068630.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142187224 142188846 - Necap2 protein_coding retained_intron MGP_C3HHeJ_T0068631.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142187252 142196345 - Necap2 protein_coding retained_intron MGP_C3HHeJ_T0068632.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142189401 142196408 - Necap2 protein_coding retained_intron MGP_C3HHeJ_T0067203.1 MGP_C3HHeJ_G0028409.1 mouse_genomes_project 4 121153408 121180999 + MGP_C3HHeJ_P0067203 Gm8439 protein_coding protein_coding MGP_C3HHeJ_T0068369.1 MGP_C3HHeJ_G0028674.1 mouse_genomes_project 4 137782878 137853520 - MGP_C3HHeJ_P0068369 Zbtb40 protein_coding unknown_likely_coding MGP_C3HHeJ_T0068370.1 MGP_C3HHeJ_G0028674.1 mouse_genomes_project 4 137782881 137853427 - MGP_C3HHeJ_P0068370 Zbtb40 protein_coding protein_coding MGP_C3HHeJ_T0068371.1 MGP_C3HHeJ_G0028674.1 mouse_genomes_project 4 137817266 137853533 - Zbtb40 protein_coding retained_intron MGP_C3HHeJ_T0064590.1 MGP_C3HHeJ_G0027814.1 mouse_genomes_project 4 30434430 30479174 + MGP_C3HHeJ_P0064590 Rragd protein_coding protein_coding MGP_C3HHeJ_T0064591.1 MGP_C3HHeJ_G0027814.1 mouse_genomes_project 4 30434836 30475793 + MGP_C3HHeJ_P0064591 Rragd protein_coding protein_coding MGP_C3HHeJ_T0064592.1 MGP_C3HHeJ_G0027814.1 mouse_genomes_project 4 30457626 30475813 + Rragd protein_coding processed_transcript MGP_C3HHeJ_T0004382.1 MGP_C3HHeJ_G0003813.1 mouse_genomes_project 4 50950913 50960730 - Smc2os antisense antisense MGP_C3HHeJ_T0067155.1 MGP_C3HHeJ_G0028398.1 mouse_genomes_project 4 120005036 120035280 - MGP_C3HHeJ_P0067155 Rimkla protein_coding protein_coding MGP_C3HHeJ_T0067156.1 MGP_C3HHeJ_G0028398.1 mouse_genomes_project 4 120014277 120035161 - Rimkla protein_coding processed_transcript MGP_C3HHeJ_T0014452.1 MGP_C3HHeJ_G0012556.1 mouse_genomes_project 4 79194414 79194817 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069592.1 MGP_C3HHeJ_G0028954.1 mouse_genomes_project 4 158600607 158607235 - MGP_C3HHeJ_P0069592 protein_coding protein_coding MGP_C3HHeJ_T0014467.1 MGP_C3HHeJ_G0012571.1 mouse_genomes_project 4 85951576 85951905 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065685.1 MGP_C3HHeJ_G0028076.1 mouse_genomes_project 4 67841284 68047262 - MGP_C3HHeJ_P0065685 Brinp1 protein_coding protein_coding MGP_C3HHeJ_T0065686.1 MGP_C3HHeJ_G0028076.1 mouse_genomes_project 4 67876013 67924335 - Brinp1 protein_coding processed_transcript MGP_C3HHeJ_T0065687.1 MGP_C3HHeJ_G0028076.1 mouse_genomes_project 4 67910519 67913345 - Brinp1 protein_coding processed_transcript MGP_C3HHeJ_T0064868.1 MGP_C3HHeJ_G0027888.1 mouse_genomes_project 4 40701523 40702189 + MGP_C3HHeJ_P0064868 protein_coding protein_coding MGP_C3HHeJ_T0007747.1 MGP_C3HHeJ_G0006329.1 mouse_genomes_project 4 41199993 41201475 + Gm26643 lincRNA lincRNA MGP_C3HHeJ_T0067260.1 MGP_C3HHeJ_G0028428.1 mouse_genomes_project 4 122908113 122949420 + Trit1 protein_coding processed_transcript MGP_C3HHeJ_T0067261.1 MGP_C3HHeJ_G0028428.1 mouse_genomes_project 4 122908113 122949420 + MGP_C3HHeJ_P0067261 Trit1 protein_coding protein_coding MGP_C3HHeJ_T0067262.1 MGP_C3HHeJ_G0028428.1 mouse_genomes_project 4 122943226 122948674 + Trit1 protein_coding processed_transcript MGP_C3HHeJ_T0100680.1 MGP_C3HHeJ_G0038874.1 mouse_genomes_project 4 132789636 132789841 - Snora73b snoRNA snoRNA MGP_C3HHeJ_T0007771.1 MGP_C3HHeJ_G0006348.1 mouse_genomes_project 4 54571946 54596669 - Gm12519 lincRNA lincRNA MGP_C3HHeJ_T0064831.1 MGP_C3HHeJ_G0027875.1 mouse_genomes_project 4 39707615 39708204 - MGP_C3HHeJ_P0064831 protein_coding protein_coding MGP_C3HHeJ_T0014538.1 MGP_C3HHeJ_G0012642.1 mouse_genomes_project 4 109969339 109969743 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014446.1 MGP_C3HHeJ_G0012550.1 mouse_genomes_project 4 75967466 75967860 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014627.1 MGP_C3HHeJ_G0012731.1 mouse_genomes_project 4 137056990 137057513 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064471.1 MGP_C3HHeJ_G0027790.1 mouse_genomes_project 4 18804315 18813860 - MGP_C3HHeJ_P0064471 Tstd3 protein_coding protein_coding MGP_C3HHeJ_T0014511.1 MGP_C3HHeJ_G0012615.1 mouse_genomes_project 4 101335815 101386333 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068468.1 MGP_C3HHeJ_G0028693.1 mouse_genomes_project 4 139312480 139314918 - MGP_C3HHeJ_P0068468 Fam43b protein_coding protein_coding MGP_C3HHeJ_T0064686.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38109211 38113990 - Ddx58 protein_coding processed_transcript MGP_C3HHeJ_T0064687.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38109215 38128176 - Ddx58 protein_coding processed_transcript MGP_C3HHeJ_T0064688.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38110287 38147115 - MGP_C3HHeJ_P0064688 Ddx58 protein_coding protein_coding MGP_C3HHeJ_T0064689.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38113623 38114244 - Ddx58 protein_coding processed_transcript MGP_C3HHeJ_T0064690.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38114219 38120904 - Ddx58 protein_coding processed_transcript MGP_C3HHeJ_T0064691.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38114301 38146987 - MGP_C3HHeJ_P0064691 Ddx58 protein_coding protein_coding MGP_C3HHeJ_T0064692.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38131006 38147042 - Ddx58 protein_coding processed_transcript MGP_C3HHeJ_T0064693.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38131451 38147009 - Ddx58 protein_coding processed_transcript MGP_C3HHeJ_T0064694.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38134089 38135876 - Ddx58 protein_coding processed_transcript MGP_C3HHeJ_T0064695.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38134578 38147112 - Ddx58 protein_coding processed_transcript MGP_C3HHeJ_T0010542.1 MGP_C3HHeJ_G0008675.1 mouse_genomes_project 4 132391168 132391240 - Gm27445 miRNA miRNA MGP_C3HHeJ_T0014359.1 MGP_C3HHeJ_G0012463.1 mouse_genomes_project 4 39210819 39211047 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010558.1 MGP_C3HHeJ_G0008691.1 mouse_genomes_project 4 139240482 139240592 - Gm27646 miRNA miRNA MGP_C3HHeJ_T0014375.1 MGP_C3HHeJ_G0012479.1 mouse_genomes_project 4 47800480 47805166 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007798.1 MGP_C3HHeJ_G0006371.1 mouse_genomes_project 4 83452910 83455751 - 6030471H07Rik lincRNA lincRNA MGP_C3HHeJ_T0014408.1 MGP_C3HHeJ_G0012512.1 mouse_genomes_project 4 58301123 58301391 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069589.1 MGP_C3HHeJ_G0028952.1 mouse_genomes_project 4 158587326 158592878 + MGP_C3HHeJ_P0069589 Perm1 protein_coding protein_coding MGP_C3HHeJ_T0101989.1 MGP_C3HHeJ_G0039954.1 mouse_genomes_project 4 62275053 62276865 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010490.1 MGP_C3HHeJ_G0008623.1 mouse_genomes_project 4 10467813 10467928 - Gm23162 miRNA miRNA MGP_C3HHeJ_T0064529.1 MGP_C3HHeJ_G0027801.1 mouse_genomes_project 4 22330449 22371180 - MGP_C3HHeJ_P0064529 Fhl5 protein_coding protein_coding MGP_C3HHeJ_T0064530.1 MGP_C3HHeJ_G0027801.1 mouse_genomes_project 4 22330449 22371180 - MGP_C3HHeJ_P0064530 Fhl5 protein_coding protein_coding MGP_C3HHeJ_T0004373.1 MGP_C3HHeJ_G0003806.1 mouse_genomes_project 4 42908312 42929177 + Gm12462 antisense antisense MGP_C3HHeJ_T0004501.1 MGP_C3HHeJ_G0003904.1 mouse_genomes_project 4 143055480 143067106 + Fhad1os2 antisense antisense MGP_C3HHeJ_T0014629.1 MGP_C3HHeJ_G0012733.1 mouse_genomes_project 4 138033065 138033733 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004356.1 MGP_C3HHeJ_G0003792.1 mouse_genomes_project 4 21925331 21932962 + Gm11899 antisense antisense MGP_C3HHeJ_T0007734.1 MGP_C3HHeJ_G0006316.1 mouse_genomes_project 4 23791463 23860434 - 4930548K13Rik lincRNA lincRNA MGP_C3HHeJ_T0066691.1 MGP_C3HHeJ_G0028293.1 mouse_genomes_project 4 115430295 115437979 - MGP_C3HHeJ_P0066691 Cyp4a29 protein_coding protein_coding MGP_C3HHeJ_T0007778.1 MGP_C3HHeJ_G0006353.1 mouse_genomes_project 4 57329747 57339921 - Gm12580 lincRNA lincRNA MGP_C3HHeJ_T0010540.1 MGP_C3HHeJ_G0008673.1 mouse_genomes_project 4 129950975 129951047 - Mir7016 miRNA miRNA MGP_C3HHeJ_T0068748.1 MGP_C3HHeJ_G0028764.1 mouse_genomes_project 4 144521728 144554582 - MGP_C3HHeJ_P0068748 Pdpn protein_coding protein_coding MGP_C3HHeJ_T0068749.1 MGP_C3HHeJ_G0028764.1 mouse_genomes_project 4 144522643 144554481 - MGP_C3HHeJ_P0068749 Pdpn protein_coding protein_coding MGP_C3HHeJ_T0065354.1 MGP_C3HHeJ_G0027984.1 mouse_genomes_project 4 48011968 48026001 - MGP_C3HHeJ_P0065354 Aldob protein_coding protein_coding MGP_C3HHeJ_T0065355.1 MGP_C3HHeJ_G0027984.1 mouse_genomes_project 4 48013007 48014840 - Aldob protein_coding processed_transcript MGP_C3HHeJ_T0065356.1 MGP_C3HHeJ_G0027984.1 mouse_genomes_project 4 48014510 48015860 - Aldob protein_coding processed_transcript MGP_C3HHeJ_T0100610.1 MGP_C3HHeJ_G0038804.1 mouse_genomes_project 4 25628646 25628775 + Gm25378 snoRNA snoRNA MGP_C3HHeJ_T0064286.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6182624 6212020 - Asph protein_coding processed_transcript MGP_C3HHeJ_T0064287.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6183634 6404311 - MGP_C3HHeJ_P0064287 Asph protein_coding protein_coding MGP_C3HHeJ_T0064288.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6183634 6404311 - MGP_C3HHeJ_P0064288 Asph protein_coding protein_coding MGP_C3HHeJ_T0064289.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6183634 6404493 - MGP_C3HHeJ_P0064289 Asph protein_coding protein_coding MGP_C3HHeJ_T0064290.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6317274 6330857 - Asph protein_coding processed_transcript MGP_C3HHeJ_T0064291.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6317667 6378821 - MGP_C3HHeJ_P0064291 Asph protein_coding protein_coding MGP_C3HHeJ_T0064292.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6317667 6378821 - MGP_C3HHeJ_P0064292 Asph protein_coding protein_coding MGP_C3HHeJ_T0064293.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6317667 6378821 - MGP_C3HHeJ_P0064293 Asph protein_coding protein_coding MGP_C3HHeJ_T0064294.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6317667 6404311 - MGP_C3HHeJ_P0064294 Asph protein_coding protein_coding MGP_C3HHeJ_T0064295.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6317667 6404311 - MGP_C3HHeJ_P0064295 Asph protein_coding protein_coding MGP_C3HHeJ_T0064296.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6339457 6374358 - Asph protein_coding processed_transcript MGP_C3HHeJ_T0064297.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6342583 6378821 - MGP_C3HHeJ_P0064297 Asph protein_coding protein_coding MGP_C3HHeJ_T0064298.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6345630 6404311 - MGP_C3HHeJ_P0064298 Asph protein_coding protein_coding MGP_C3HHeJ_T0064299.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6355739 6378821 - MGP_C3HHeJ_P0064299 Asph protein_coding protein_coding MGP_C3HHeJ_T0064300.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6356526 6404311 - MGP_C3HHeJ_P0064300 Asph protein_coding protein_coding MGP_C3HHeJ_T0064301.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6363899 6404311 - MGP_C3HHeJ_P0064301 Asph protein_coding protein_coding MGP_C3HHeJ_T0064302.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6365425 6404311 - MGP_C3HHeJ_P0064302 Asph protein_coding protein_coding MGP_C3HHeJ_T0064303.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6365804 6404470 - MGP_C3HHeJ_P0064303 Asph protein_coding protein_coding MGP_C3HHeJ_T0064304.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6367994 6378821 - Asph protein_coding processed_transcript MGP_C3HHeJ_T0064305.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6403452 6404226 - Asph protein_coding processed_transcript MGP_C3HHeJ_T0099379.1 MGP_C3HHeJ_G0037573.1 mouse_genomes_project 4 117346863 117346968 + Gm26355 snRNA snRNA MGP_C3HHeJ_T0014471.1 MGP_C3HHeJ_G0012575.1 mouse_genomes_project 4 87768640 87768915 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064771.1 MGP_C3HHeJ_G0027861.1 mouse_genomes_project 4 39482023 39484778 - 1110017D15Rik protein_coding processed_transcript MGP_C3HHeJ_T0064772.1 MGP_C3HHeJ_G0027861.1 mouse_genomes_project 4 39482023 39484768 - 1110017D15Rik protein_coding processed_transcript MGP_C3HHeJ_T0064773.1 MGP_C3HHeJ_G0027861.1 mouse_genomes_project 4 39482023 39484773 - 1110017D15Rik protein_coding processed_transcript MGP_C3HHeJ_T0064774.1 MGP_C3HHeJ_G0027861.1 mouse_genomes_project 4 39482023 39488467 - MGP_C3HHeJ_P0064774 1110017D15Rik protein_coding protein_coding MGP_C3HHeJ_T0064775.1 MGP_C3HHeJ_G0027861.1 mouse_genomes_project 4 39482023 39494438 - MGP_C3HHeJ_P0064775 1110017D15Rik protein_coding protein_coding MGP_C3HHeJ_T0064776.1 MGP_C3HHeJ_G0027861.1 mouse_genomes_project 4 39482023 39494438 - MGP_C3HHeJ_P0064776 1110017D15Rik protein_coding protein_coding MGP_C3HHeJ_T0064777.1 MGP_C3HHeJ_G0027861.1 mouse_genomes_project 4 39484138 39494433 - 1110017D15Rik protein_coding processed_transcript MGP_C3HHeJ_T0064778.1 MGP_C3HHeJ_G0027861.1 mouse_genomes_project 4 39485531 39485962 - 1110017D15Rik protein_coding processed_transcript MGP_C3HHeJ_T0001398.1 MGP_C3HHeJ_G0001328.1 mouse_genomes_project 4 158372288 158376402 - TEC TEC MGP_C3HHeJ_T0014437.1 MGP_C3HHeJ_G0012541.1 mouse_genomes_project 4 74215600 74215801 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069124.1 MGP_C3HHeJ_G0028867.1 mouse_genomes_project 4 154158481 154165740 - MGP_C3HHeJ_P0069124 Thap3 protein_coding protein_coding MGP_C3HHeJ_T0069125.1 MGP_C3HHeJ_G0028867.1 mouse_genomes_project 4 154158644 154165713 - MGP_C3HHeJ_P0069125 Thap3 protein_coding protein_coding MGP_C3HHeJ_T0069126.1 MGP_C3HHeJ_G0028867.1 mouse_genomes_project 4 154162215 154165723 - Thap3 protein_coding retained_intron MGP_C3HHeJ_T0014232.1 MGP_C3HHeJ_G0012336.1 mouse_genomes_project 4 3200682 3201428 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004450.1 MGP_C3HHeJ_G0003864.1 mouse_genomes_project 4 120852427 120869360 + Foxo6os antisense antisense MGP_C3HHeJ_T0065262.1 MGP_C3HHeJ_G0027958.1 mouse_genomes_project 4 44788379 44810117 + MGP_C3HHeJ_P0065262 Anp32b protein_coding protein_coding MGP_C3HHeJ_T0014353.1 MGP_C3HHeJ_G0012457.1 mouse_genomes_project 4 37970422 37972310 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068996.1 MGP_C3HHeJ_G0028844.1 mouse_genomes_project 4 151556377 151604974 + MGP_C3HHeJ_P0068996 Ctnnbip1 protein_coding protein_coding MGP_C3HHeJ_T0068997.1 MGP_C3HHeJ_G0028844.1 mouse_genomes_project 4 151583111 151603045 + MGP_C3HHeJ_P0068997 Ctnnbip1 protein_coding protein_coding MGP_C3HHeJ_T0064818.1 MGP_C3HHeJ_G0027872.1 mouse_genomes_project 4 39699023 39707906 - MGP_C3HHeJ_P0064818 protein_coding protein_coding MGP_C3HHeJ_T0064832.1 MGP_C3HHeJ_G0027872.1 mouse_genomes_project 4 39707615 39708201 - MGP_C3HHeJ_P0064832 protein_coding protein_coding MGP_C3HHeJ_T0067680.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854856 129861549 + MGP_C3HHeJ_P0067680 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067681.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854856 129861959 + MGP_C3HHeJ_P0067681 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067682.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854857 129873241 + MGP_C3HHeJ_P0067682 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067683.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854868 129862370 + MGP_C3HHeJ_P0067683 Tmem234 protein_coding protein_coding MGP_C3HHeJ_T0067684.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854869 129861538 + MGP_C3HHeJ_P0067684 Tmem234 protein_coding protein_coding MGP_C3HHeJ_T0067685.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854875 129861728 + MGP_C3HHeJ_P0067685 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067686.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854879 129861573 + MGP_C3HHeJ_P0067686 Tmem234 protein_coding protein_coding MGP_C3HHeJ_T0067687.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854879 129861804 + MGP_C3HHeJ_P0067687 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067688.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854879 129877509 + MGP_C3HHeJ_P0067688 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067689.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854883 129861804 + MGP_C3HHeJ_P0067689 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067690.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854888 129862363 + MGP_C3HHeJ_P0067690 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067691.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854889 129861153 + MGP_C3HHeJ_P0067691 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067692.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854890 129861804 + Tmem234 protein_coding retained_intron MGP_C3HHeJ_T0067693.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854891 129861170 + MGP_C3HHeJ_P0067693 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067694.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854892 129856888 + Tmem234 protein_coding processed_transcript MGP_C3HHeJ_T0067695.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854895 129855638 + MGP_C3HHeJ_P0067695 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067696.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129855171 129861684 + MGP_C3HHeJ_P0067696 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067697.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129855171 129856119 + MGP_C3HHeJ_P0067697 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067698.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129855276 129855939 + Tmem234 protein_coding retained_intron MGP_C3HHeJ_T0067699.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129855380 129856406 + Tmem234 protein_coding retained_intron MGP_C3HHeJ_T0067700.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129856199 129861321 + Tmem234 protein_coding retained_intron MGP_C3HHeJ_T0067015.1 MGP_C3HHeJ_G0028359.1 mouse_genomes_project 4 118639816 118685473 - MGP_C3HHeJ_P0067015 Kdm4a protein_coding protein_coding MGP_C3HHeJ_T0067016.1 MGP_C3HHeJ_G0028359.1 mouse_genomes_project 4 118639818 118685084 - MGP_C3HHeJ_P0067016 Kdm4a protein_coding protein_coding MGP_C3HHeJ_T0067017.1 MGP_C3HHeJ_G0028359.1 mouse_genomes_project 4 118639865 118685408 - MGP_C3HHeJ_P0067017 Kdm4a protein_coding protein_coding MGP_C3HHeJ_T0067018.1 MGP_C3HHeJ_G0028359.1 mouse_genomes_project 4 118645101 118685376 - MGP_C3HHeJ_P0067018 Kdm4a protein_coding protein_coding MGP_C3HHeJ_T0067019.1 MGP_C3HHeJ_G0028359.1 mouse_genomes_project 4 118648841 118649816 - Kdm4a protein_coding processed_transcript MGP_C3HHeJ_T0067020.1 MGP_C3HHeJ_G0028359.1 mouse_genomes_project 4 118652107 118664781 - Kdm4a protein_coding processed_transcript MGP_C3HHeJ_T0099393.1 MGP_C3HHeJ_G0037587.1 mouse_genomes_project 4 130182565 130182717 + Gm23845 snRNA snRNA MGP_C3HHeJ_T0064816.1 MGP_C3HHeJ_G0027871.1 mouse_genomes_project 4 39699023 39700764 - MGP_C3HHeJ_P0064816 protein_coding protein_coding MGP_C3HHeJ_T0064817.1 MGP_C3HHeJ_G0027871.1 mouse_genomes_project 4 39699023 39699716 - MGP_C3HHeJ_P0064817 protein_coding protein_coding MGP_C3HHeJ_T0067157.1 MGP_C3HHeJ_G0028399.1 mouse_genomes_project 4 120074348 120084162 - MGP_C3HHeJ_P0067157 AA415398 protein_coding protein_coding MGP_C3HHeJ_T0067158.1 MGP_C3HHeJ_G0028399.1 mouse_genomes_project 4 120075476 120080634 - AA415398 protein_coding processed_transcript MGP_C3HHeJ_T0067159.1 MGP_C3HHeJ_G0028399.1 mouse_genomes_project 4 120075703 120084523 - AA415398 protein_coding processed_transcript MGP_C3HHeJ_T0067160.1 MGP_C3HHeJ_G0028399.1 mouse_genomes_project 4 120078932 120084922 - AA415398 protein_coding processed_transcript MGP_C3HHeJ_T0099332.1 MGP_C3HHeJ_G0037526.1 mouse_genomes_project 4 22965275 22965378 - Gm24042 snRNA snRNA MGP_C3HHeJ_T0007808.1 MGP_C3HHeJ_G0006379.1 mouse_genomes_project 4 91668394 91669493 - 4930577H14Rik lincRNA lincRNA MGP_C3HHeJ_T0007742.1 MGP_C3HHeJ_G0006324.1 mouse_genomes_project 4 36448594 36760895 - lincRNA lincRNA MGP_C3HHeJ_T0065542.1 MGP_C3HHeJ_G0028037.1 mouse_genomes_project 4 58237244 58317523 - MGP_C3HHeJ_P0065542 Ptbp3 protein_coding protein_coding MGP_C3HHeJ_T0065543.1 MGP_C3HHeJ_G0028037.1 mouse_genomes_project 4 58240632 58317652 - MGP_C3HHeJ_P0065543 Ptbp3 protein_coding protein_coding MGP_C3HHeJ_T0065544.1 MGP_C3HHeJ_G0028037.1 mouse_genomes_project 4 58242308 58251059 - Ptbp3 protein_coding retained_intron MGP_C3HHeJ_T0065545.1 MGP_C3HHeJ_G0028037.1 mouse_genomes_project 4 58246733 58258504 - MGP_C3HHeJ_P0065545 Ptbp3 protein_coding protein_coding MGP_C3HHeJ_T0065546.1 MGP_C3HHeJ_G0028037.1 mouse_genomes_project 4 58246738 58317620 - MGP_C3HHeJ_P0065546 Ptbp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065547.1 MGP_C3HHeJ_G0028037.1 mouse_genomes_project 4 58258407 58317625 - MGP_C3HHeJ_P0065547 Ptbp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065548.1 MGP_C3HHeJ_G0028037.1 mouse_genomes_project 4 58258457 58317633 - MGP_C3HHeJ_P0065548 Ptbp3 protein_coding protein_coding MGP_C3HHeJ_T0065549.1 MGP_C3HHeJ_G0028037.1 mouse_genomes_project 4 58268328 58283041 - Ptbp3 protein_coding retained_intron MGP_C3HHeJ_T0065550.1 MGP_C3HHeJ_G0028037.1 mouse_genomes_project 4 58285849 58317105 - MGP_C3HHeJ_P0065550 Ptbp3 protein_coding protein_coding MGP_C3HHeJ_T0069476.1 MGP_C3HHeJ_G0028930.1 mouse_genomes_project 4 158126056 158128790 + MGP_C3HHeJ_P0069476 Ankrd65 protein_coding protein_coding MGP_C3HHeJ_T0069477.1 MGP_C3HHeJ_G0028930.1 mouse_genomes_project 4 158126789 158135781 + MGP_C3HHeJ_P0069477 Ankrd65 protein_coding protein_coding MGP_C3HHeJ_T0069303.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156607674 156939995 - Prdm16 protein_coding processed_transcript MGP_C3HHeJ_T0069304.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156607674 156939995 - MGP_C3HHeJ_P0069304 Prdm16 protein_coding protein_coding MGP_C3HHeJ_T0069305.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156607674 156939995 - MGP_C3HHeJ_P0069305 Prdm16 protein_coding protein_coding MGP_C3HHeJ_T0069306.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156607674 156939995 - MGP_C3HHeJ_P0069306 Prdm16 protein_coding protein_coding MGP_C3HHeJ_T0069307.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156607674 156939995 - MGP_C3HHeJ_P0069307 Prdm16 protein_coding protein_coding MGP_C3HHeJ_T0069308.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156607674 156939995 - MGP_C3HHeJ_P0069308 Prdm16 protein_coding protein_coding MGP_C3HHeJ_T0069309.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156607674 156939995 - MGP_C3HHeJ_P0069309 Prdm16 protein_coding protein_coding MGP_C3HHeJ_T0069310.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156614883 156627374 - Prdm16 protein_coding processed_transcript MGP_C3HHeJ_T0069311.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156620766 156627444 - Prdm16 protein_coding processed_transcript MGP_C3HHeJ_T0069313.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156638642 156640961 - Prdm16 protein_coding processed_transcript MGP_C3HHeJ_T0069314.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156647826 156940002 - MGP_C3HHeJ_P0069314 Prdm16 protein_coding protein_coding MGP_C3HHeJ_T0069315.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156773333 156827985 - Prdm16 protein_coding processed_transcript MGP_C3HHeJ_T0069316.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156773364 156939926 - Prdm16 protein_coding processed_transcript MGP_C3HHeJ_T0064242.1 MGP_C3HHeJ_G0027733.1 mouse_genomes_project 4 2839816 2876676 + MGP_C3HHeJ_P0064242 Ubxn2b protein_coding protein_coding MGP_C3HHeJ_T0014312.1 MGP_C3HHeJ_G0012416.1 mouse_genomes_project 4 25748181 25748528 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065675.1 MGP_C3HHeJ_G0028073.1 mouse_genomes_project 4 64372944 65436441 - MGP_C3HHeJ_P0065675 Astn2 protein_coding protein_coding MGP_C3HHeJ_T0065676.1 MGP_C3HHeJ_G0028073.1 mouse_genomes_project 4 64372944 65436313 - MGP_C3HHeJ_P0065676 Astn2 protein_coding protein_coding MGP_C3HHeJ_T0067527.1 MGP_C3HHeJ_G0028490.1 mouse_genomes_project 4 127301205 127372860 + MGP_C3HHeJ_P0067527 Dlgap3 protein_coding protein_coding MGP_C3HHeJ_T0067528.1 MGP_C3HHeJ_G0028490.1 mouse_genomes_project 4 127304901 127372860 + MGP_C3HHeJ_P0067528 Dlgap3 protein_coding protein_coding MGP_C3HHeJ_T0067529.1 MGP_C3HHeJ_G0028490.1 mouse_genomes_project 4 127327644 127372206 + MGP_C3HHeJ_P0067529 Dlgap3 protein_coding protein_coding MGP_C3HHeJ_T0067530.1 MGP_C3HHeJ_G0028490.1 mouse_genomes_project 4 127337826 127350223 + Dlgap3 protein_coding processed_transcript MGP_C3HHeJ_T0099390.1 MGP_C3HHeJ_G0037584.1 mouse_genomes_project 4 127239830 127239936 - Gm25600 snRNA snRNA MGP_C3HHeJ_T0017851.1 MGP_C3HHeJ_G0015327.1 mouse_genomes_project 4 109770047 109869625 + Gm12811 processed_transcript processed_transcript MGP_C3HHeJ_T0014381.1 MGP_C3HHeJ_G0012485.1 mouse_genomes_project 4 50760285 50762577 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014653.1 MGP_C3HHeJ_G0012757.1 mouse_genomes_project 4 151535273 151535692 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014254.1 MGP_C3HHeJ_G0012358.1 mouse_genomes_project 4 11628899 11629130 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007793.1 MGP_C3HHeJ_G0006368.1 mouse_genomes_project 4 81395527 81433973 + Gm5860 lincRNA lincRNA MGP_C3HHeJ_T0007794.1 MGP_C3HHeJ_G0006368.1 mouse_genomes_project 4 81395969 81397844 + Gm5860 lincRNA lincRNA MGP_C3HHeJ_T0007795.1 MGP_C3HHeJ_G0006368.1 mouse_genomes_project 4 81396053 81433838 + Gm5860 lincRNA lincRNA MGP_C3HHeJ_T0014275.1 MGP_C3HHeJ_G0012379.1 mouse_genomes_project 4 15467411 15469521 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014649.1 MGP_C3HHeJ_G0012753.1 mouse_genomes_project 4 149960881 149961659 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014575.1 MGP_C3HHeJ_G0012679.1 mouse_genomes_project 4 121717325 121717748 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014286.1 MGP_C3HHeJ_G0012390.1 mouse_genomes_project 4 19187105 19187504 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064938.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41230004 41331010 + Unc13b protein_coding retained_intron MGP_C3HHeJ_T0064939.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41230020 41431203 + MGP_C3HHeJ_P0064939 Unc13b protein_coding protein_coding MGP_C3HHeJ_T0064940.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41230027 41336360 + Unc13b protein_coding processed_transcript MGP_C3HHeJ_T0064941.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41230035 41333443 + Unc13b protein_coding retained_intron MGP_C3HHeJ_T0064942.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41230124 41429960 + MGP_C3HHeJ_P0064942 Unc13b protein_coding protein_coding MGP_C3HHeJ_T0064943.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41230124 41429960 + MGP_C3HHeJ_P0064943 Unc13b protein_coding protein_coding MGP_C3HHeJ_T0064944.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41230131 41429943 + MGP_C3HHeJ_P0064944 Unc13b protein_coding protein_coding MGP_C3HHeJ_T0064945.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41230315 41348004 + MGP_C3HHeJ_P0064945 Unc13b protein_coding unknown_likely_coding MGP_C3HHeJ_T0064946.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41286585 41402190 + Unc13b protein_coding processed_transcript MGP_C3HHeJ_T0064947.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41342837 41396956 + Unc13b protein_coding processed_transcript MGP_C3HHeJ_T0064948.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41345450 41401508 + MGP_C3HHeJ_P0064948 Unc13b protein_coding protein_coding MGP_C3HHeJ_T0064949.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41373821 41410927 + MGP_C3HHeJ_P0064949 Unc13b protein_coding unknown_likely_coding MGP_C3HHeJ_T0064950.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41394522 41397371 + Unc13b protein_coding retained_intron MGP_C3HHeJ_T0064951.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41398220 41411586 + Unc13b protein_coding retained_intron MGP_C3HHeJ_T0064952.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41414313 41421411 + Unc13b protein_coding retained_intron MGP_C3HHeJ_T0064953.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41420689 41423567 + MGP_C3HHeJ_P0064953 Unc13b protein_coding protein_coding MGP_C3HHeJ_T0064954.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41421976 41426886 + Unc13b protein_coding retained_intron MGP_C3HHeJ_T0068340.1 MGP_C3HHeJ_G0028665.1 mouse_genomes_project 4 137243752 137323174 + MGP_C3HHeJ_P0068340 Luzp1 protein_coding protein_coding MGP_C3HHeJ_T0068341.1 MGP_C3HHeJ_G0028665.1 mouse_genomes_project 4 137243752 137323170 + MGP_C3HHeJ_P0068341 Luzp1 protein_coding protein_coding MGP_C3HHeJ_T0068342.1 MGP_C3HHeJ_G0028665.1 mouse_genomes_project 4 137243795 137295073 + Luzp1 protein_coding retained_intron MGP_C3HHeJ_T0068343.1 MGP_C3HHeJ_G0028665.1 mouse_genomes_project 4 137243842 137314524 + MGP_C3HHeJ_P0068343 Luzp1 protein_coding protein_coding MGP_C3HHeJ_T0068344.1 MGP_C3HHeJ_G0028665.1 mouse_genomes_project 4 137294756 137320248 + MGP_C3HHeJ_P0068344 Luzp1 protein_coding protein_coding MGP_C3HHeJ_T0068345.1 MGP_C3HHeJ_G0028665.1 mouse_genomes_project 4 137314210 137323173 + MGP_C3HHeJ_P0068345 Luzp1 protein_coding protein_coding MGP_C3HHeJ_T0068346.1 MGP_C3HHeJ_G0028665.1 mouse_genomes_project 4 137319118 137328642 + MGP_C3HHeJ_P0068346 Luzp1 protein_coding protein_coding MGP_C3HHeJ_T0001383.1 MGP_C3HHeJ_G0001314.1 mouse_genomes_project 4 108782561 108784849 - TEC TEC MGP_C3HHeJ_T0065001.1 MGP_C3HHeJ_G0027906.1 mouse_genomes_project 4 41672468 41673774 + Ccdc107 protein_coding processed_transcript MGP_C3HHeJ_T0065002.1 MGP_C3HHeJ_G0027906.1 mouse_genomes_project 4 41672930 41675490 + MGP_C3HHeJ_P0065002 Ccdc107 protein_coding protein_coding MGP_C3HHeJ_T0065003.1 MGP_C3HHeJ_G0027906.1 mouse_genomes_project 4 41672945 41673379 + Ccdc107 protein_coding processed_transcript MGP_C3HHeJ_T0065004.1 MGP_C3HHeJ_G0027906.1 mouse_genomes_project 4 41672957 41675490 + MGP_C3HHeJ_P0065004 Ccdc107 protein_coding protein_coding MGP_C3HHeJ_T0065005.1 MGP_C3HHeJ_G0027906.1 mouse_genomes_project 4 41672985 41675433 + Ccdc107 protein_coding processed_transcript MGP_C3HHeJ_T0065006.1 MGP_C3HHeJ_G0027906.1 mouse_genomes_project 4 41672985 41675440 + Ccdc107 protein_coding processed_transcript MGP_C3HHeJ_T0068489.1 MGP_C3HHeJ_G0028701.1 mouse_genomes_project 4 139759285 139779840 - MGP_C3HHeJ_P0068489 Pla2g5 protein_coding protein_coding MGP_C3HHeJ_T0068490.1 MGP_C3HHeJ_G0028701.1 mouse_genomes_project 4 139759285 139779833 - MGP_C3HHeJ_P0068490 Pla2g5 protein_coding protein_coding MGP_C3HHeJ_T0068491.1 MGP_C3HHeJ_G0028701.1 mouse_genomes_project 4 139759290 139826897 - MGP_C3HHeJ_P0068491 Pla2g5 protein_coding protein_coding MGP_C3HHeJ_T0068492.1 MGP_C3HHeJ_G0028701.1 mouse_genomes_project 4 139760389 139772677 - MGP_C3HHeJ_P0068492 Pla2g5 protein_coding protein_coding MGP_C3HHeJ_T0068493.1 MGP_C3HHeJ_G0028701.1 mouse_genomes_project 4 139760595 139772723 - Pla2g5 protein_coding processed_transcript MGP_C3HHeJ_T0068494.1 MGP_C3HHeJ_G0028701.1 mouse_genomes_project 4 139764636 139779835 - Pla2g5 protein_coding processed_transcript MGP_C3HHeJ_T0068495.1 MGP_C3HHeJ_G0028701.1 mouse_genomes_project 4 139764650 139779806 - Pla2g5 protein_coding processed_transcript MGP_C3HHeJ_T0068496.1 MGP_C3HHeJ_G0028701.1 mouse_genomes_project 4 139766259 139769828 - Pla2g5 protein_coding processed_transcript MGP_C3HHeJ_T0068497.1 MGP_C3HHeJ_G0028701.1 mouse_genomes_project 4 139821627 139826877 - Pla2g5 protein_coding processed_transcript MGP_C3HHeJ_T0066404.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107920198 107994261 + MGP_C3HHeJ_P0066404 Lrp8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066405.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107920214 107992910 + MGP_C3HHeJ_P0066405 Lrp8 protein_coding protein_coding MGP_C3HHeJ_T0066406.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107920251 107993993 + MGP_C3HHeJ_P0066406 Lrp8 protein_coding protein_coding MGP_C3HHeJ_T0066407.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107920350 107992910 + MGP_C3HHeJ_P0066407 Lrp8 protein_coding protein_coding MGP_C3HHeJ_T0066408.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107920350 107992444 + MGP_C3HHeJ_P0066408 Lrp8 protein_coding protein_coding MGP_C3HHeJ_T0066409.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107920778 107970402 + Lrp8 protein_coding processed_transcript MGP_C3HHeJ_T0066410.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107921187 107992910 + Lrp8 protein_coding processed_transcript MGP_C3HHeJ_T0066411.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107942266 107992910 + Lrp8 protein_coding processed_transcript MGP_C3HHeJ_T0066412.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107950052 107956293 + Lrp8 protein_coding retained_intron MGP_C3HHeJ_T0066413.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107950072 107996934 + MGP_C3HHeJ_P0066413 Lrp8 protein_coding protein_coding MGP_C3HHeJ_T0066414.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107965242 107967337 + Lrp8 protein_coding retained_intron MGP_C3HHeJ_T0066415.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107969167 107975902 + Lrp8 protein_coding processed_transcript MGP_C3HHeJ_T0100682.1 MGP_C3HHeJ_G0038876.1 mouse_genomes_project 4 134745386 134745474 - Gm27619 snoRNA snoRNA MGP_C3HHeJ_T0069047.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152317639 152325336 + MGP_C3HHeJ_P0069047 Eno1 protein_coding protein_coding MGP_C3HHeJ_T0069048.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152317870 152330219 + MGP_C3HHeJ_P0069048 Eno1 protein_coding protein_coding MGP_C3HHeJ_T0069049.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152318158 152323775 + Eno1 protein_coding retained_intron MGP_C3HHeJ_T0069050.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152318158 152326395 + MGP_C3HHeJ_P0069050 Eno1 protein_coding protein_coding MGP_C3HHeJ_T0069051.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152318161 152320863 + Eno1 protein_coding retained_intron MGP_C3HHeJ_T0069052.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152318623 152323190 + MGP_C3HHeJ_P0069052 Eno1 protein_coding protein_coding MGP_C3HHeJ_T0069053.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152324532 152330213 + MGP_C3HHeJ_P0069053 Eno1 protein_coding protein_coding MGP_C3HHeJ_T0069054.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152325281 152328232 + Eno1 protein_coding retained_intron MGP_C3HHeJ_T0069055.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152327750 152328897 + Eno1 protein_coding retained_intron MGP_C3HHeJ_T0069056.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152328799 152329627 + Eno1 protein_coding retained_intron MGP_C3HHeJ_T0004384.1 MGP_C3HHeJ_G0003815.1 mouse_genomes_project 4 52126507 52128222 - 1700060J05Rik antisense antisense MGP_C3HHeJ_T0068339.1 MGP_C3HHeJ_G0028664.1 mouse_genomes_project 4 137235616 137237318 + MGP_C3HHeJ_P0068339 6030445D17Rik protein_coding protein_coding MGP_C3HHeJ_T0010548.1 MGP_C3HHeJ_G0008681.1 mouse_genomes_project 4 134260520 134260579 - Mir7227 miRNA miRNA MGP_C3HHeJ_T0067566.1 MGP_C3HHeJ_G0028502.1 mouse_genomes_project 4 128948900 128962762 + MGP_C3HHeJ_P0067566 A3galt2 protein_coding protein_coding MGP_C3HHeJ_T0067567.1 MGP_C3HHeJ_G0028502.1 mouse_genomes_project 4 128952794 128963472 + MGP_C3HHeJ_P0067567 A3galt2 protein_coding protein_coding MGP_C3HHeJ_T0099373.1 MGP_C3HHeJ_G0037567.1 mouse_genomes_project 4 108652695 108652798 + Gm23138 snRNA snRNA MGP_C3HHeJ_T0065710.1 MGP_C3HHeJ_G0028083.1 mouse_genomes_project 4 73056719 73059100 - 2310002L09Rik protein_coding processed_transcript MGP_C3HHeJ_T0065711.1 MGP_C3HHeJ_G0028083.1 mouse_genomes_project 4 73056719 73068145 - MGP_C3HHeJ_P0065711 2310002L09Rik protein_coding protein_coding MGP_C3HHeJ_T0065712.1 MGP_C3HHeJ_G0028083.1 mouse_genomes_project 4 73058877 73068144 - MGP_C3HHeJ_P0065712 2310002L09Rik protein_coding protein_coding MGP_C3HHeJ_T0065533.1 MGP_C3HHeJ_G0028035.1 mouse_genomes_project 4 57876449 57975116 + MGP_C3HHeJ_P0065533 Ugcg protein_coding protein_coding MGP_C3HHeJ_T0065534.1 MGP_C3HHeJ_G0028035.1 mouse_genomes_project 4 57876747 57899493 + Ugcg protein_coding processed_transcript MGP_C3HHeJ_T0065535.1 MGP_C3HHeJ_G0028035.1 mouse_genomes_project 4 57899009 57901201 + Ugcg protein_coding processed_transcript MGP_C3HHeJ_T0065536.1 MGP_C3HHeJ_G0028035.1 mouse_genomes_project 4 57899945 57901585 + Ugcg protein_coding processed_transcript MGP_C3HHeJ_T0001393.1 MGP_C3HHeJ_G0001323.1 mouse_genomes_project 4 144020436 144020655 + TEC TEC MGP_C3HHeJ_T0067605.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129358583 129399752 - MGP_C3HHeJ_P0067605 S100pbp protein_coding protein_coding MGP_C3HHeJ_T0067606.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129358583 129399715 - MGP_C3HHeJ_P0067606 S100pbp protein_coding protein_coding MGP_C3HHeJ_T0067607.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129358583 129399900 - MGP_C3HHeJ_P0067607 S100pbp protein_coding protein_coding MGP_C3HHeJ_T0067608.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129359979 129392694 - MGP_C3HHeJ_P0067608 S100pbp protein_coding protein_coding MGP_C3HHeJ_T0067609.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129361154 129399750 - S100pbp protein_coding processed_transcript MGP_C3HHeJ_T0067610.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129361433 129399750 - S100pbp protein_coding retained_intron MGP_C3HHeJ_T0067611.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129361433 129390586 - S100pbp protein_coding retained_intron MGP_C3HHeJ_T0067612.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129361639 129399685 - MGP_C3HHeJ_P0067612 S100pbp protein_coding protein_coding MGP_C3HHeJ_T0067613.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129361639 129399782 - MGP_C3HHeJ_P0067613 S100pbp protein_coding protein_coding MGP_C3HHeJ_T0067614.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129373704 129399790 - S100pbp protein_coding processed_transcript MGP_C3HHeJ_T0067615.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129378930 129388915 - S100pbp protein_coding processed_transcript MGP_C3HHeJ_T0067616.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129387774 129399799 - MGP_C3HHeJ_P0067616 S100pbp protein_coding protein_coding MGP_C3HHeJ_T0067617.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129391905 129399843 - S100pbp protein_coding processed_transcript MGP_C3HHeJ_T0067618.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129391963 129399671 - S100pbp protein_coding processed_transcript MGP_C3HHeJ_T0065969.1 MGP_C3HHeJ_G0028144.1 mouse_genomes_project 4 94316262 94325171 - Plaa protein_coding processed_transcript MGP_C3HHeJ_T0065970.1 MGP_C3HHeJ_G0028144.1 mouse_genomes_project 4 94317915 94352924 - MGP_C3HHeJ_P0065970 Plaa protein_coding protein_coding MGP_C3HHeJ_T0065971.1 MGP_C3HHeJ_G0028144.1 mouse_genomes_project 4 94320435 94332357 - MGP_C3HHeJ_P0065971 Plaa protein_coding protein_coding MGP_C3HHeJ_T0065972.1 MGP_C3HHeJ_G0028144.1 mouse_genomes_project 4 94322644 94332336 - Plaa protein_coding processed_transcript MGP_C3HHeJ_T0065973.1 MGP_C3HHeJ_G0028144.1 mouse_genomes_project 4 94334618 94352815 - Plaa protein_coding processed_transcript MGP_C3HHeJ_T0065974.1 MGP_C3HHeJ_G0028144.1 mouse_genomes_project 4 94338552 94352861 - Plaa protein_coding processed_transcript MGP_C3HHeJ_T0017818.1 MGP_C3HHeJ_G0015303.1 mouse_genomes_project 4 32804839 32814667 + Gm12367 processed_transcript processed_transcript MGP_C3HHeJ_T0017819.1 MGP_C3HHeJ_G0015303.1 mouse_genomes_project 4 32804857 32814765 + Gm12367 processed_transcript processed_transcript MGP_C3HHeJ_T0017820.1 MGP_C3HHeJ_G0015303.1 mouse_genomes_project 4 32804874 32843424 + Gm12367 processed_transcript processed_transcript MGP_C3HHeJ_T0066924.1 MGP_C3HHeJ_G0028343.1 mouse_genomes_project 4 117616518 117640829 - MGP_C3HHeJ_P0066924 Kif2c protein_coding protein_coding MGP_C3HHeJ_T0066925.1 MGP_C3HHeJ_G0028343.1 mouse_genomes_project 4 117617022 117636172 - MGP_C3HHeJ_P0066925 Kif2c protein_coding protein_coding MGP_C3HHeJ_T0066926.1 MGP_C3HHeJ_G0028343.1 mouse_genomes_project 4 117621557 117622291 - Kif2c protein_coding retained_intron MGP_C3HHeJ_T0066927.1 MGP_C3HHeJ_G0028343.1 mouse_genomes_project 4 117631104 117640732 - Kif2c protein_coding retained_intron MGP_C3HHeJ_T0066928.1 MGP_C3HHeJ_G0028343.1 mouse_genomes_project 4 117631106 117640796 - Kif2c protein_coding processed_transcript MGP_C3HHeJ_T0066929.1 MGP_C3HHeJ_G0028343.1 mouse_genomes_project 4 117631844 117640782 - Kif2c protein_coding retained_intron MGP_C3HHeJ_T0066930.1 MGP_C3HHeJ_G0028343.1 mouse_genomes_project 4 117632385 117636154 - Kif2c protein_coding processed_transcript MGP_C3HHeJ_T0066931.1 MGP_C3HHeJ_G0028343.1 mouse_genomes_project 4 117632428 117636170 - MGP_C3HHeJ_P0066931 Kif2c protein_coding protein_coding MGP_C3HHeJ_T0100643.1 MGP_C3HHeJ_G0038837.1 mouse_genomes_project 4 73756701 73756833 + Gm26379 snoRNA snoRNA MGP_C3HHeJ_T0068726.1 MGP_C3HHeJ_G0028760.1 mouse_genomes_project 4 143060277 143186818 - MGP_C3HHeJ_P0068726 Fhad1 protein_coding protein_coding MGP_C3HHeJ_T0068727.1 MGP_C3HHeJ_G0028760.1 mouse_genomes_project 4 143060694 143183404 - MGP_C3HHeJ_P0068727 Fhad1 protein_coding protein_coding MGP_C3HHeJ_T0068728.1 MGP_C3HHeJ_G0028760.1 mouse_genomes_project 4 143060694 143186826 - MGP_C3HHeJ_P0068728 Fhad1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0068729.1 MGP_C3HHeJ_G0028760.1 mouse_genomes_project 4 143087345 143093697 - Fhad1 protein_coding processed_transcript MGP_C3HHeJ_T0068730.1 MGP_C3HHeJ_G0028760.1 mouse_genomes_project 4 143087345 143104348 - MGP_C3HHeJ_P0068730 Fhad1 protein_coding protein_coding MGP_C3HHeJ_T0068731.1 MGP_C3HHeJ_G0028760.1 mouse_genomes_project 4 143099630 143123145 - Fhad1 protein_coding processed_transcript MGP_C3HHeJ_T0068732.1 MGP_C3HHeJ_G0028760.1 mouse_genomes_project 4 143104041 143125290 - Fhad1 protein_coding processed_transcript MGP_C3HHeJ_T0068733.1 MGP_C3HHeJ_G0028760.1 mouse_genomes_project 4 143133734 143186833 - Fhad1 protein_coding retained_intron MGP_C3HHeJ_T0068734.1 MGP_C3HHeJ_G0028760.1 mouse_genomes_project 4 143185528 143186790 - Fhad1 protein_coding processed_transcript MGP_C3HHeJ_T0067046.1 MGP_C3HHeJ_G0028364.1 mouse_genomes_project 4 118938455 118942921 - MGP_C3HHeJ_P0067046 Cdc20 protein_coding protein_coding MGP_C3HHeJ_T0067047.1 MGP_C3HHeJ_G0028364.1 mouse_genomes_project 4 118938659 118942147 - MGP_C3HHeJ_P0067047 Cdc20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067048.1 MGP_C3HHeJ_G0028364.1 mouse_genomes_project 4 118939102 118941390 - Cdc20 protein_coding retained_intron MGP_C3HHeJ_T0014405.1 MGP_C3HHeJ_G0012509.1 mouse_genomes_project 4 57267344 57267761 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017886.1 MGP_C3HHeJ_G0015344.1 mouse_genomes_project 4 154620773 154624325 - Gm16334 processed_transcript processed_transcript MGP_C3HHeJ_T0068047.1 MGP_C3HHeJ_G0028601.1 mouse_genomes_project 4 134390916 134432216 - MGP_C3HHeJ_P0068047 Rps6ka1 protein_coding protein_coding MGP_C3HHeJ_T0068048.1 MGP_C3HHeJ_G0028601.1 mouse_genomes_project 4 134390925 134432368 - MGP_C3HHeJ_P0068048 Rps6ka1 protein_coding protein_coding MGP_C3HHeJ_T0068049.1 MGP_C3HHeJ_G0028601.1 mouse_genomes_project 4 134390925 134419304 - MGP_C3HHeJ_P0068049 Rps6ka1 protein_coding protein_coding MGP_C3HHeJ_T0068050.1 MGP_C3HHeJ_G0028601.1 mouse_genomes_project 4 134391447 134416886 - MGP_C3HHeJ_P0068050 Rps6ka1 protein_coding protein_coding MGP_C3HHeJ_T0068051.1 MGP_C3HHeJ_G0028601.1 mouse_genomes_project 4 134391679 134417604 - MGP_C3HHeJ_P0068051 Rps6ka1 protein_coding protein_coding MGP_C3HHeJ_T0068052.1 MGP_C3HHeJ_G0028601.1 mouse_genomes_project 4 134395183 134405121 - Rps6ka1 protein_coding retained_intron MGP_C3HHeJ_T0068053.1 MGP_C3HHeJ_G0028601.1 mouse_genomes_project 4 134404358 134405233 - Rps6ka1 protein_coding retained_intron MGP_C3HHeJ_T0068054.1 MGP_C3HHeJ_G0028601.1 mouse_genomes_project 4 134416536 134432158 - Rps6ka1 protein_coding processed_transcript MGP_C3HHeJ_T0068365.1 MGP_C3HHeJ_G0028671.1 mouse_genomes_project 4 137689524 137692795 - MGP_C3HHeJ_P0068365 C1qc protein_coding protein_coding MGP_C3HHeJ_T0068366.1 MGP_C3HHeJ_G0028671.1 mouse_genomes_project 4 137691381 137692606 - C1qc protein_coding processed_transcript MGP_C3HHeJ_T0066889.1 MGP_C3HHeJ_G0028336.1 mouse_genomes_project 4 117438170 117449017 + MGP_C3HHeJ_P0066889 Hectd3 protein_coding protein_coding MGP_C3HHeJ_T0066890.1 MGP_C3HHeJ_G0028336.1 mouse_genomes_project 4 117441126 117444055 + Hectd3 protein_coding retained_intron MGP_C3HHeJ_T0066891.1 MGP_C3HHeJ_G0028336.1 mouse_genomes_project 4 117446596 117447194 + Hectd3 protein_coding retained_intron MGP_C3HHeJ_T0014477.1 MGP_C3HHeJ_G0012581.1 mouse_genomes_project 4 90161360 90162112 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014561.1 MGP_C3HHeJ_G0012665.1 mouse_genomes_project 4 118254224 118254539 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007796.1 MGP_C3HHeJ_G0006369.1 mouse_genomes_project 4 82766026 82775144 + Gm11184 lincRNA lincRNA MGP_C3HHeJ_T0065645.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62344126 62426858 - MGP_C3HHeJ_P0065645 Whrn protein_coding protein_coding MGP_C3HHeJ_T0065646.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62344131 62425222 - Whrn protein_coding processed_transcript MGP_C3HHeJ_T0065647.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62344131 62362544 - Whrn protein_coding retained_intron MGP_C3HHeJ_T0065648.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62344131 62362544 - Whrn protein_coding retained_intron MGP_C3HHeJ_T0065649.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62344131 62427576 - MGP_C3HHeJ_P0065649 Whrn protein_coding protein_coding MGP_C3HHeJ_T0065650.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62344131 62427576 - MGP_C3HHeJ_P0065650 Whrn protein_coding protein_coding MGP_C3HHeJ_T0065651.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62344131 62427576 - MGP_C3HHeJ_P0065651 Whrn protein_coding protein_coding MGP_C3HHeJ_T0065652.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62344131 62427576 - MGP_C3HHeJ_P0065652 Whrn protein_coding protein_coding MGP_C3HHeJ_T0065653.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62348690 62361151 - MGP_C3HHeJ_P0065653 Whrn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065654.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62354933 62361224 - Whrn protein_coding processed_transcript MGP_C3HHeJ_T0065655.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62360654 62427616 - MGP_C3HHeJ_P0065655 Whrn protein_coding protein_coding MGP_C3HHeJ_T0065656.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62364022 62391721 - Whrn protein_coding retained_intron MGP_C3HHeJ_T0065657.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62365450 62403091 - MGP_C3HHeJ_P0065657 Whrn protein_coding protein_coding MGP_C3HHeJ_T0065658.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62390581 62426384 - MGP_C3HHeJ_P0065658 Whrn protein_coding protein_coding MGP_C3HHeJ_T0065659.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62391238 62426302 - Whrn protein_coding retained_intron MGP_C3HHeJ_T0014370.1 MGP_C3HHeJ_G0012474.1 mouse_genomes_project 4 45521528 45521663 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014414.1 MGP_C3HHeJ_G0012518.1 mouse_genomes_project 4 63827193 63828407 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004419.1 MGP_C3HHeJ_G0003840.1 mouse_genomes_project 4 106658378 106660360 - Gm12744 antisense antisense MGP_C3HHeJ_T0068375.1 MGP_C3HHeJ_G0028677.1 mouse_genomes_project 4 138224465 138235896 - MGP_C3HHeJ_P0068375 protein_coding protein_coding MGP_C3HHeJ_T0066742.1 MGP_C3HHeJ_G0028309.1 mouse_genomes_project 4 116291768 116302282 - MGP_C3HHeJ_P0066742 Dmbx1 protein_coding protein_coding MGP_C3HHeJ_T0066743.1 MGP_C3HHeJ_G0028309.1 mouse_genomes_project 4 116291768 116316180 - MGP_C3HHeJ_P0066743 Dmbx1 protein_coding protein_coding MGP_C3HHeJ_T0066744.1 MGP_C3HHeJ_G0028309.1 mouse_genomes_project 4 116291769 116316180 - MGP_C3HHeJ_P0066744 Dmbx1 protein_coding protein_coding MGP_C3HHeJ_T0004367.1 MGP_C3HHeJ_G0003801.1 mouse_genomes_project 4 39708628 39857614 + antisense antisense MGP_C3HHeJ_T0068165.1 MGP_C3HHeJ_G0028625.1 mouse_genomes_project 4 135107503 135119549 + MGP_C3HHeJ_P0068165 Paqr7 protein_coding protein_coding MGP_C3HHeJ_T0068166.1 MGP_C3HHeJ_G0028625.1 mouse_genomes_project 4 135107781 135117942 + MGP_C3HHeJ_P0068166 Paqr7 protein_coding protein_coding MGP_C3HHeJ_T0068167.1 MGP_C3HHeJ_G0028625.1 mouse_genomes_project 4 135107781 135118273 + MGP_C3HHeJ_P0068167 Paqr7 protein_coding protein_coding MGP_C3HHeJ_T0068168.1 MGP_C3HHeJ_G0028625.1 mouse_genomes_project 4 135107787 135118002 + MGP_C3HHeJ_P0068168 Paqr7 protein_coding protein_coding MGP_C3HHeJ_T0068169.1 MGP_C3HHeJ_G0028625.1 mouse_genomes_project 4 135107810 135121637 + MGP_C3HHeJ_P0068169 Paqr7 protein_coding protein_coding MGP_C3HHeJ_T0068170.1 MGP_C3HHeJ_G0028625.1 mouse_genomes_project 4 135107847 135117722 + Paqr7 protein_coding processed_transcript MGP_C3HHeJ_T0007744.1 MGP_C3HHeJ_G0006326.1 mouse_genomes_project 4 38391008 38432909 - 4933428C19Rik lincRNA lincRNA MGP_C3HHeJ_T0014284.1 MGP_C3HHeJ_G0012388.1 mouse_genomes_project 4 18718732 18719001 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066037.1 MGP_C3HHeJ_G0028160.1 mouse_genomes_project 4 96414398 96451311 - MGP_C3HHeJ_P0066037 Cyp2j5 protein_coding protein_coding MGP_C3HHeJ_T0068795.1 MGP_C3HHeJ_G0028798.1 mouse_genomes_project 4 146195408 146219671 - MGP_C3HHeJ_P0068795 Gm436 protein_coding protein_coding MGP_C3HHeJ_T0007865.1 MGP_C3HHeJ_G0006423.1 mouse_genomes_project 4 125931893 125943005 - 2610028E06Rik lincRNA lincRNA MGP_C3HHeJ_T0007866.1 MGP_C3HHeJ_G0006423.1 mouse_genomes_project 4 125931893 125966305 - 2610028E06Rik lincRNA lincRNA MGP_C3HHeJ_T0007867.1 MGP_C3HHeJ_G0006423.1 mouse_genomes_project 4 125932239 125966412 - 2610028E06Rik lincRNA lincRNA MGP_C3HHeJ_T0007868.1 MGP_C3HHeJ_G0006423.1 mouse_genomes_project 4 125934457 125961129 - 2610028E06Rik lincRNA lincRNA MGP_C3HHeJ_T0007869.1 MGP_C3HHeJ_G0006423.1 mouse_genomes_project 4 125962548 125966412 - 2610028E06Rik lincRNA lincRNA MGP_C3HHeJ_T0068127.1 MGP_C3HHeJ_G0028614.1 mouse_genomes_project 4 134831880 134834188 - MGP_C3HHeJ_P0068127 Zfp593 protein_coding protein_coding MGP_C3HHeJ_T0068128.1 MGP_C3HHeJ_G0028614.1 mouse_genomes_project 4 134831898 134834138 - Zfp593 protein_coding processed_transcript MGP_C3HHeJ_T0066916.1 MGP_C3HHeJ_G0028341.1 mouse_genomes_project 4 117584511 117589737 - MGP_C3HHeJ_P0066916 Plk3 protein_coding protein_coding MGP_C3HHeJ_T0066917.1 MGP_C3HHeJ_G0028341.1 mouse_genomes_project 4 117584519 117589817 - Plk3 protein_coding processed_transcript MGP_C3HHeJ_T0066440.1 MGP_C3HHeJ_G0028243.1 mouse_genomes_project 4 108139618 108157714 - MGP_C3HHeJ_P0066440 Podn protein_coding protein_coding MGP_C3HHeJ_T0066441.1 MGP_C3HHeJ_G0028243.1 mouse_genomes_project 4 108139620 108149162 - MGP_C3HHeJ_P0066441 Podn protein_coding protein_coding MGP_C3HHeJ_T0066442.1 MGP_C3HHeJ_G0028243.1 mouse_genomes_project 4 108139624 108154319 - MGP_C3HHeJ_P0066442 Podn protein_coding protein_coding MGP_C3HHeJ_T0066443.1 MGP_C3HHeJ_G0028243.1 mouse_genomes_project 4 108139678 108157577 - MGP_C3HHeJ_P0066443 Podn protein_coding protein_coding MGP_C3HHeJ_T0066444.1 MGP_C3HHeJ_G0028243.1 mouse_genomes_project 4 108139681 108157578 - Podn protein_coding processed_transcript MGP_C3HHeJ_T0066445.1 MGP_C3HHeJ_G0028243.1 mouse_genomes_project 4 108142574 108146373 - MGP_C3HHeJ_P0066445 Podn protein_coding protein_coding MGP_C3HHeJ_T0066446.1 MGP_C3HHeJ_G0028243.1 mouse_genomes_project 4 108152640 108156610 - Podn protein_coding processed_transcript MGP_C3HHeJ_T0066447.1 MGP_C3HHeJ_G0028243.1 mouse_genomes_project 4 108152812 108157961 - Podn protein_coding processed_transcript MGP_C3HHeJ_T0068820.1 MGP_C3HHeJ_G0028808.1 mouse_genomes_project 4 149742353 149768341 - MGP_C3HHeJ_P0068820 Zfp933 protein_coding protein_coding MGP_C3HHeJ_T0068821.1 MGP_C3HHeJ_G0028808.1 mouse_genomes_project 4 149745930 149768341 - MGP_C3HHeJ_P0068821 Zfp933 protein_coding protein_coding MGP_C3HHeJ_T0065224.1 MGP_C3HHeJ_G0027949.1 mouse_genomes_project 4 44194654 44213933 + Ccdc180 protein_coding processed_transcript MGP_C3HHeJ_T0065225.1 MGP_C3HHeJ_G0027949.1 mouse_genomes_project 4 44194654 44257934 + MGP_C3HHeJ_P0065225 Ccdc180 protein_coding protein_coding MGP_C3HHeJ_T0065226.1 MGP_C3HHeJ_G0027949.1 mouse_genomes_project 4 44195202 44257927 + MGP_C3HHeJ_P0065226 Ccdc180 protein_coding protein_coding MGP_C3HHeJ_T0065227.1 MGP_C3HHeJ_G0027949.1 mouse_genomes_project 4 44220309 44228869 + MGP_C3HHeJ_P0065227 Ccdc180 protein_coding protein_coding MGP_C3HHeJ_T0014259.1 MGP_C3HHeJ_G0012363.1 mouse_genomes_project 4 12524548 12524872 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014331.1 MGP_C3HHeJ_G0012435.1 mouse_genomes_project 4 30678832 30679022 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014301.1 MGP_C3HHeJ_G0012405.1 mouse_genomes_project 4 22992507 22992892 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007922.1 MGP_C3HHeJ_G0006459.1 mouse_genomes_project 4 140965079 140966522 + Gm1667 lincRNA lincRNA MGP_C3HHeJ_T0067455.1 MGP_C3HHeJ_G0028476.1 mouse_genomes_project 4 126414828 126435355 - MGP_C3HHeJ_P0067455 Ago3 protein_coding protein_coding MGP_C3HHeJ_T0067456.1 MGP_C3HHeJ_G0028476.1 mouse_genomes_project 4 126416297 126515709 - MGP_C3HHeJ_P0067456 Ago3 protein_coding protein_coding MGP_C3HHeJ_T0067457.1 MGP_C3HHeJ_G0028476.1 mouse_genomes_project 4 126430027 126435937 - MGP_C3HHeJ_P0067457 Ago3 protein_coding protein_coding MGP_C3HHeJ_T0067458.1 MGP_C3HHeJ_G0028476.1 mouse_genomes_project 4 126459585 126487392 - Ago3 protein_coding processed_transcript MGP_C3HHeJ_T0067459.1 MGP_C3HHeJ_G0028476.1 mouse_genomes_project 4 126459825 126515439 - MGP_C3HHeJ_P0067459 Ago3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067460.1 MGP_C3HHeJ_G0028476.1 mouse_genomes_project 4 126481056 126487433 - Ago3 protein_coding processed_transcript MGP_C3HHeJ_T0067461.1 MGP_C3HHeJ_G0028476.1 mouse_genomes_project 4 126490793 126515694 - Ago3 protein_coding processed_transcript MGP_C3HHeJ_T0065968.1 MGP_C3HHeJ_G0028143.1 mouse_genomes_project 4 94308288 94308821 + MGP_C3HHeJ_P0065968 Gm10306 protein_coding protein_coding MGP_C3HHeJ_T0099355.1 MGP_C3HHeJ_G0037549.1 mouse_genomes_project 4 62566552 62566659 - Gm24234 snRNA snRNA MGP_C3HHeJ_T0064314.1 MGP_C3HHeJ_G0027746.1 mouse_genomes_project 4 7811515 7838157 - MGP_C3HHeJ_P0064314 Ndufaf6 protein_coding protein_coding MGP_C3HHeJ_T0064315.1 MGP_C3HHeJ_G0027746.1 mouse_genomes_project 4 7811520 7819113 - Ndufaf6 protein_coding processed_transcript MGP_C3HHeJ_T0064316.1 MGP_C3HHeJ_G0027746.1 mouse_genomes_project 4 7811683 7838102 - Ndufaf6 protein_coding processed_transcript MGP_C3HHeJ_T0064317.1 MGP_C3HHeJ_G0027746.1 mouse_genomes_project 4 7819102 7838102 - Ndufaf6 protein_coding processed_transcript MGP_C3HHeJ_T0064318.1 MGP_C3HHeJ_G0027746.1 mouse_genomes_project 4 7822082 7838136 - Ndufaf6 protein_coding processed_transcript MGP_C3HHeJ_T0064319.1 MGP_C3HHeJ_G0027746.1 mouse_genomes_project 4 7831350 7838158 - Ndufaf6 protein_coding processed_transcript MGP_C3HHeJ_T0064320.1 MGP_C3HHeJ_G0027746.1 mouse_genomes_project 4 7834094 7838141 - Ndufaf6 protein_coding processed_transcript MGP_C3HHeJ_T0064615.1 MGP_C3HHeJ_G0027823.1 mouse_genomes_project 4 31568797 31594855 - MGP_C3HHeJ_P0064615 Spaca1 protein_coding protein_coding MGP_C3HHeJ_T0064616.1 MGP_C3HHeJ_G0027823.1 mouse_genomes_project 4 31568799 31584884 - MGP_C3HHeJ_P0064616 Spaca1 protein_coding protein_coding MGP_C3HHeJ_T0064617.1 MGP_C3HHeJ_G0027823.1 mouse_genomes_project 4 31572236 31595007 - MGP_C3HHeJ_P0064617 Spaca1 protein_coding protein_coding MGP_C3HHeJ_T0065333.1 MGP_C3HHeJ_G0027975.1 mouse_genomes_project 4 46942083 46964551 + MGP_C3HHeJ_P0065333 Msantd3 protein_coding protein_coding MGP_C3HHeJ_T0065334.1 MGP_C3HHeJ_G0027975.1 mouse_genomes_project 4 46942227 46964210 + MGP_C3HHeJ_P0065334 Msantd3 protein_coding protein_coding MGP_C3HHeJ_T0065335.1 MGP_C3HHeJ_G0027975.1 mouse_genomes_project 4 46962579 46964551 + Msantd3 protein_coding processed_transcript MGP_C3HHeJ_T0068597.1 MGP_C3HHeJ_G0028729.1 mouse_genomes_project 4 142020903 142066397 + MGP_C3HHeJ_P0068597 Padi2 protein_coding protein_coding MGP_C3HHeJ_T0068598.1 MGP_C3HHeJ_G0028729.1 mouse_genomes_project 4 142039369 142047984 + Padi2 protein_coding processed_transcript MGP_C3HHeJ_T0068599.1 MGP_C3HHeJ_G0028729.1 mouse_genomes_project 4 142059804 142063546 + Padi2 protein_coding processed_transcript MGP_C3HHeJ_T0007755.1 MGP_C3HHeJ_G0006336.1 mouse_genomes_project 4 45354243 45356726 - Gm568 lincRNA lincRNA MGP_C3HHeJ_T0069068.1 MGP_C3HHeJ_G0028858.1 mouse_genomes_project 4 152990362 153005340 + MGP_C3HHeJ_P0069068 Errfi1 protein_coding protein_coding MGP_C3HHeJ_T0069069.1 MGP_C3HHeJ_G0028858.1 mouse_genomes_project 4 152991504 152992247 + Errfi1 protein_coding processed_transcript MGP_C3HHeJ_T0069070.1 MGP_C3HHeJ_G0028858.1 mouse_genomes_project 4 152991504 153005335 + MGP_C3HHeJ_P0069070 Errfi1 protein_coding protein_coding MGP_C3HHeJ_T0004481.1 MGP_C3HHeJ_G0003888.1 mouse_genomes_project 4 136733999 136742420 + Gm13008 antisense antisense MGP_C3HHeJ_T0014509.1 MGP_C3HHeJ_G0012613.1 mouse_genomes_project 4 101259119 101259411 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014584.1 MGP_C3HHeJ_G0012688.1 mouse_genomes_project 4 123167398 123168258 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007768.1 MGP_C3HHeJ_G0006345.1 mouse_genomes_project 4 54022646 54038932 - Gm12510 lincRNA lincRNA MGP_C3HHeJ_T0017839.1 MGP_C3HHeJ_G0015317.1 mouse_genomes_project 4 89096845 89138868 + Gm12610 processed_transcript processed_transcript MGP_C3HHeJ_T0011476.1 MGP_C3HHeJ_G0009609.1 mouse_genomes_project 4 85402004 85402281 + Gm26069 misc_RNA misc_RNA MGP_C3HHeJ_T0004484.1 MGP_C3HHeJ_G0003891.1 mouse_genomes_project 4 138580648 138590305 - Rap1gapos antisense antisense MGP_C3HHeJ_T0066173.1 MGP_C3HHeJ_G0028190.1 mouse_genomes_project 4 101768428 101777649 - MGP_C3HHeJ_P0066173 protein_coding protein_coding MGP_C3HHeJ_T0004534.1 MGP_C3HHeJ_G0003929.1 mouse_genomes_project 4 156850474 156857856 + Gm13133 antisense antisense MGP_C3HHeJ_T0069273.1 MGP_C3HHeJ_G0028892.1 mouse_genomes_project 4 156297479 156314113 - MGP_C3HHeJ_P0069273 Ccdc27 protein_coding protein_coding MGP_C3HHeJ_T0064441.1 MGP_C3HHeJ_G0027779.1 mouse_genomes_project 4 16535211 16589657 - MGP_C3HHeJ_P0064441 Cpne3 protein_coding protein_coding MGP_C3HHeJ_T0064442.1 MGP_C3HHeJ_G0027779.1 mouse_genomes_project 4 16557602 16560661 - Cpne3 protein_coding processed_transcript MGP_C3HHeJ_T0064443.1 MGP_C3HHeJ_G0027779.1 mouse_genomes_project 4 16568891 16589632 - Cpne3 protein_coding retained_intron MGP_C3HHeJ_T0004343.1 MGP_C3HHeJ_G0003782.1 mouse_genomes_project 4 3355904 3371946 + Gm11802 antisense antisense MGP_C3HHeJ_T0066663.1 MGP_C3HHeJ_G0028283.1 mouse_genomes_project 4 114196826 114199107 - protein_coding retained_intron MGP_C3HHeJ_T0014518.1 MGP_C3HHeJ_G0012622.1 mouse_genomes_project 4 105012981 105013249 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099394.1 MGP_C3HHeJ_G0037588.1 mouse_genomes_project 4 132696764 132696898 - Rnu11 snRNA snRNA MGP_C3HHeJ_T0100676.1 MGP_C3HHeJ_G0038870.1 mouse_genomes_project 4 132741317 132741453 + Snora16a snoRNA snoRNA MGP_C3HHeJ_T0066032.1 MGP_C3HHeJ_G0028156.1 mouse_genomes_project 4 96054818 96115574 - MGP_C3HHeJ_P0066032 Cyp2j11 protein_coding protein_coding MGP_C3HHeJ_T0007748.1 MGP_C3HHeJ_G0006330.1 mouse_genomes_project 4 41217311 41224306 + Gm26881 lincRNA lincRNA MGP_C3HHeJ_T0064375.1 MGP_C3HHeJ_G0027759.1 mouse_genomes_project 4 8858109 8910922 - MGP_C3HHeJ_P0064375 Tmem67 protein_coding protein_coding MGP_C3HHeJ_T0064376.1 MGP_C3HHeJ_G0027759.1 mouse_genomes_project 4 8858117 8910903 - MGP_C3HHeJ_P0064376 Tmem67 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064377.1 MGP_C3HHeJ_G0027759.1 mouse_genomes_project 4 8858399 8928473 - MGP_C3HHeJ_P0064377 Tmem67 protein_coding protein_coding MGP_C3HHeJ_T0064378.1 MGP_C3HHeJ_G0027759.1 mouse_genomes_project 4 8881682 8910972 - Tmem67 protein_coding retained_intron MGP_C3HHeJ_T0064379.1 MGP_C3HHeJ_G0027759.1 mouse_genomes_project 4 8890064 8910892 - Tmem67 protein_coding retained_intron MGP_C3HHeJ_T0064380.1 MGP_C3HHeJ_G0027759.1 mouse_genomes_project 4 8900640 8910897 - Tmem67 protein_coding retained_intron MGP_C3HHeJ_T0065169.1 MGP_C3HHeJ_G0027936.1 mouse_genomes_project 4 43238891 43248231 + MGP_C3HHeJ_P0065169 Grhpr protein_coding protein_coding MGP_C3HHeJ_T0065170.1 MGP_C3HHeJ_G0027936.1 mouse_genomes_project 4 43238899 43241440 + MGP_C3HHeJ_P0065170 Grhpr protein_coding protein_coding MGP_C3HHeJ_T0065171.1 MGP_C3HHeJ_G0027936.1 mouse_genomes_project 4 43238928 43246507 + MGP_C3HHeJ_P0065171 Grhpr protein_coding protein_coding MGP_C3HHeJ_T0065172.1 MGP_C3HHeJ_G0027936.1 mouse_genomes_project 4 43238929 43244824 + Grhpr protein_coding processed_transcript MGP_C3HHeJ_T0065173.1 MGP_C3HHeJ_G0027936.1 mouse_genomes_project 4 43238957 43244745 + MGP_C3HHeJ_P0065173 Grhpr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065174.1 MGP_C3HHeJ_G0027936.1 mouse_genomes_project 4 43238996 43243887 + Grhpr protein_coding processed_transcript MGP_C3HHeJ_T0069377.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563026 157569633 + Faap20 protein_coding processed_transcript MGP_C3HHeJ_T0069378.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563085 157564163 + Faap20 protein_coding processed_transcript MGP_C3HHeJ_T0069379.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563101 157564021 + Faap20 protein_coding processed_transcript MGP_C3HHeJ_T0069380.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563121 157569677 + Faap20 protein_coding processed_transcript MGP_C3HHeJ_T0069381.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563188 157569901 + MGP_C3HHeJ_P0069381 Faap20 protein_coding protein_coding MGP_C3HHeJ_T0069382.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563188 157569897 + MGP_C3HHeJ_P0069382 Faap20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069383.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563211 157569597 + MGP_C3HHeJ_P0069383 Faap20 protein_coding protein_coding MGP_C3HHeJ_T0069384.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563225 157569898 + MGP_C3HHeJ_P0069384 Faap20 protein_coding protein_coding MGP_C3HHeJ_T0069385.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563542 157569632 + MGP_C3HHeJ_P0069385 Faap20 protein_coding protein_coding MGP_C3HHeJ_T0069386.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563906 157569662 + Faap20 protein_coding retained_intron MGP_C3HHeJ_T0068735.1 MGP_C3HHeJ_G0028761.1 mouse_genomes_project 4 143203574 143270529 - MGP_C3HHeJ_P0068735 Tmem51 protein_coding protein_coding MGP_C3HHeJ_T0067955.1 MGP_C3HHeJ_G0028576.1 mouse_genomes_project 4 133255282 133271491 - MGP_C3HHeJ_P0067955 Themis2 protein_coding protein_coding MGP_C3HHeJ_T0066797.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116701043 116860936 - MGP_C3HHeJ_P0066797 Mast2 protein_coding protein_coding MGP_C3HHeJ_T0066798.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116701044 116861368 - MGP_C3HHeJ_P0066798 Mast2 protein_coding protein_coding MGP_C3HHeJ_T0066799.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116701044 116861368 - MGP_C3HHeJ_P0066799 Mast2 protein_coding protein_coding MGP_C3HHeJ_T0066800.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116701096 116861149 - MGP_C3HHeJ_P0066800 Mast2 protein_coding protein_coding MGP_C3HHeJ_T0066801.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116702289 116703487 - Mast2 protein_coding processed_transcript MGP_C3HHeJ_T0066802.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116703861 116705083 - Mast2 protein_coding processed_transcript MGP_C3HHeJ_T0066803.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116703893 116704930 - Mast2 protein_coding processed_transcript MGP_C3HHeJ_T0066804.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116706572 116710358 - Mast2 protein_coding processed_transcript MGP_C3HHeJ_T0066805.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116707134 116712042 - Mast2 protein_coding processed_transcript MGP_C3HHeJ_T0066806.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116712001 116722764 - Mast2 protein_coding processed_transcript MGP_C3HHeJ_T0066807.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116714130 116725636 - Mast2 protein_coding processed_transcript MGP_C3HHeJ_T0066808.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116716715 116802923 - MGP_C3HHeJ_P0066808 Mast2 protein_coding protein_coding MGP_C3HHeJ_T0066809.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116722584 116802939 - MGP_C3HHeJ_P0066809 Mast2 protein_coding protein_coding MGP_C3HHeJ_T0066810.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116727882 116803744 - Mast2 protein_coding processed_transcript MGP_C3HHeJ_T0066811.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116728171 116832754 - Mast2 protein_coding processed_transcript MGP_C3HHeJ_T0010565.1 MGP_C3HHeJ_G0008698.1 mouse_genomes_project 4 150090022 150090083 - Mir7022 miRNA miRNA MGP_C3HHeJ_T0067387.1 MGP_C3HHeJ_G0028461.1 mouse_genomes_project 4 125141151 125150568 - MGP_C3HHeJ_P0067387 Zc3h12a protein_coding protein_coding MGP_C3HHeJ_T0067388.1 MGP_C3HHeJ_G0028461.1 mouse_genomes_project 4 125142821 125145248 - Zc3h12a protein_coding retained_intron MGP_C3HHeJ_T0007724.1 MGP_C3HHeJ_G0006307.1 mouse_genomes_project 4 11092137 11110215 - 1700120G11Rik lincRNA lincRNA MGP_C3HHeJ_T0067263.1 MGP_C3HHeJ_G0028429.1 mouse_genomes_project 4 123008641 123030708 + MGP_C3HHeJ_P0067263 Bmp8b protein_coding protein_coding MGP_C3HHeJ_T0067266.1 MGP_C3HHeJ_G0028429.1 mouse_genomes_project 4 123019680 123036673 + Bmp8b protein_coding processed_transcript MGP_C3HHeJ_T0068561.1 MGP_C3HHeJ_G0028718.1 mouse_genomes_project 4 140641661 140669739 + MGP_C3HHeJ_P0068561 Aldh4a1 protein_coding protein_coding MGP_C3HHeJ_T0068562.1 MGP_C3HHeJ_G0028718.1 mouse_genomes_project 4 140641689 140669736 + Aldh4a1 protein_coding processed_transcript MGP_C3HHeJ_T0068563.1 MGP_C3HHeJ_G0028718.1 mouse_genomes_project 4 140641904 140655562 + Aldh4a1 protein_coding processed_transcript MGP_C3HHeJ_T0014603.1 MGP_C3HHeJ_G0012707.1 mouse_genomes_project 4 129616406 129616742 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067121.1 MGP_C3HHeJ_G0028392.1 mouse_genomes_project 4 119784923 119789324 + MGP_C3HHeJ_P0067121 Cldn19 protein_coding protein_coding MGP_C3HHeJ_T0067122.1 MGP_C3HHeJ_G0028392.1 mouse_genomes_project 4 119785018 119791918 + MGP_C3HHeJ_P0067122 Cldn19 protein_coding protein_coding MGP_C3HHeJ_T0065391.1 MGP_C3HHeJ_G0027997.1 mouse_genomes_project 4 51533658 51545934 + MGP_C3HHeJ_P0065391 Nipsnap3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065392.1 MGP_C3HHeJ_G0027997.1 mouse_genomes_project 4 51533670 51545941 + MGP_C3HHeJ_P0065392 Nipsnap3a protein_coding protein_coding MGP_C3HHeJ_T0065393.1 MGP_C3HHeJ_G0027997.1 mouse_genomes_project 4 51533804 51546250 + MGP_C3HHeJ_P0065393 Nipsnap3a protein_coding protein_coding MGP_C3HHeJ_T0065394.1 MGP_C3HHeJ_G0027997.1 mouse_genomes_project 4 51545335 51545933 + Nipsnap3a protein_coding retained_intron MGP_C3HHeJ_T0004448.1 MGP_C3HHeJ_G0003862.1 mouse_genomes_project 4 119660842 119665916 - Gm12868 antisense antisense MGP_C3HHeJ_T0014273.1 MGP_C3HHeJ_G0012377.1 mouse_genomes_project 4 15182125 15182347 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010555.1 MGP_C3HHeJ_G0008688.1 mouse_genomes_project 4 138406256 138406341 + Mir7018 miRNA miRNA MGP_C3HHeJ_T0064199.1 MGP_C3HHeJ_G0027723.1 mouse_genomes_project 4 319054 445824 + MGP_C3HHeJ_P0064199 Lyn protein_coding protein_coding MGP_C3HHeJ_T0064200.1 MGP_C3HHeJ_G0027723.1 mouse_genomes_project 4 319066 445823 + MGP_C3HHeJ_P0064200 Lyn protein_coding protein_coding MGP_C3HHeJ_T0064201.1 MGP_C3HHeJ_G0027723.1 mouse_genomes_project 4 393817 444154 + MGP_C3HHeJ_P0064201 Lyn protein_coding unknown_likely_coding MGP_C3HHeJ_T0014496.1 MGP_C3HHeJ_G0012600.1 mouse_genomes_project 4 98061876 98062422 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068658.1 MGP_C3HHeJ_G0028742.1 mouse_genomes_project 4 142517520 142531089 - MGP_C3HHeJ_P0068658 Clcnka protein_coding protein_coding MGP_C3HHeJ_T0068659.1 MGP_C3HHeJ_G0028742.1 mouse_genomes_project 4 142517520 142531609 - MGP_C3HHeJ_P0068659 Clcnka protein_coding protein_coding MGP_C3HHeJ_T0068660.1 MGP_C3HHeJ_G0028742.1 mouse_genomes_project 4 142524278 142527710 - Clcnka protein_coding retained_intron MGP_C3HHeJ_T0068661.1 MGP_C3HHeJ_G0028742.1 mouse_genomes_project 4 142528001 142531459 - MGP_C3HHeJ_P0068661 Clcnka protein_coding protein_coding MGP_C3HHeJ_T0067105.1 MGP_C3HHeJ_G0028390.1 mouse_genomes_project 4 119734470 119747903 - MGP_C3HHeJ_P0067105 4930538K18Rik protein_coding protein_coding MGP_C3HHeJ_T0014553.1 MGP_C3HHeJ_G0012657.1 mouse_genomes_project 4 117274485 117274825 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100596.1 MGP_C3HHeJ_G0038790.1 mouse_genomes_project 4 240100 240227 + Gm22541 snoRNA snoRNA MGP_C3HHeJ_T0068179.1 MGP_C3HHeJ_G0028628.1 mouse_genomes_project 4 135150278 135164591 - MGP_C3HHeJ_P0068179 Sepn1 protein_coding protein_coding MGP_C3HHeJ_T0068180.1 MGP_C3HHeJ_G0028628.1 mouse_genomes_project 4 135151965 135153417 - Sepn1 protein_coding processed_transcript MGP_C3HHeJ_T0100672.1 MGP_C3HHeJ_G0038866.1 mouse_genomes_project 4 131104843 131104926 + Gm23711 snoRNA snoRNA MGP_C3HHeJ_T0064557.1 MGP_C3HHeJ_G0027808.1 mouse_genomes_project 4 29662901 30022629 + MGP_C3HHeJ_P0064557 Bach2 protein_coding protein_coding MGP_C3HHeJ_T0064558.1 MGP_C3HHeJ_G0027808.1 mouse_genomes_project 4 29663047 30017760 + MGP_C3HHeJ_P0064558 Bach2 protein_coding protein_coding MGP_C3HHeJ_T0064559.1 MGP_C3HHeJ_G0027808.1 mouse_genomes_project 4 29663174 29935612 + Bach2 protein_coding processed_transcript MGP_C3HHeJ_T0064560.1 MGP_C3HHeJ_G0027808.1 mouse_genomes_project 4 29671873 29745095 + Bach2 protein_coding processed_transcript MGP_C3HHeJ_T0064561.1 MGP_C3HHeJ_G0027808.1 mouse_genomes_project 4 29849003 30022633 + MGP_C3HHeJ_P0064561 Bach2 protein_coding protein_coding MGP_C3HHeJ_T0064562.1 MGP_C3HHeJ_G0027808.1 mouse_genomes_project 4 29935480 29936602 + Bach2 protein_coding processed_transcript MGP_C3HHeJ_T0064563.1 MGP_C3HHeJ_G0027808.1 mouse_genomes_project 4 30011472 30016399 + Bach2 protein_coding processed_transcript MGP_C3HHeJ_T0014424.1 MGP_C3HHeJ_G0012528.1 mouse_genomes_project 4 69110070 69111134 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099381.1 MGP_C3HHeJ_G0037575.1 mouse_genomes_project 4 117655157 117655273 + Gm25099 snRNA snRNA MGP_C3HHeJ_T0100649.1 MGP_C3HHeJ_G0038843.1 mouse_genomes_project 4 90746608 90746740 - Gm25244 snoRNA snoRNA MGP_C3HHeJ_T0014461.1 MGP_C3HHeJ_G0012565.1 mouse_genomes_project 4 82997736 82998199 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010518.1 MGP_C3HHeJ_G0008651.1 mouse_genomes_project 4 88563202 88563308 - Mir31 miRNA miRNA MGP_C3HHeJ_T0007910.1 MGP_C3HHeJ_G0006450.1 mouse_genomes_project 4 135772043 135774270 - Gm16225 lincRNA lincRNA MGP_C3HHeJ_T0014532.1 MGP_C3HHeJ_G0012636.1 mouse_genomes_project 4 108603580 108604116 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010533.1 MGP_C3HHeJ_G0008666.1 mouse_genomes_project 4 121561763 121561827 - Mir7015 miRNA miRNA MGP_C3HHeJ_T0065415.1 MGP_C3HHeJ_G0028003.1 mouse_genomes_project 4 52339797 52349953 + MGP_C3HHeJ_P0065415 Tal2 protein_coding protein_coding MGP_C3HHeJ_T0017799.1 MGP_C3HHeJ_G0015293.1 mouse_genomes_project 4 808582 858516 + A830012C17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0064813.1 MGP_C3HHeJ_G0027870.1 mouse_genomes_project 4 39699002 39699750 - MGP_C3HHeJ_P0064813 protein_coding protein_coding MGP_C3HHeJ_T0064815.1 MGP_C3HHeJ_G0027870.1 mouse_genomes_project 4 39699006 39708023 - MGP_C3HHeJ_P0064815 protein_coding protein_coding MGP_C3HHeJ_T0064828.1 MGP_C3HHeJ_G0027870.1 mouse_genomes_project 4 39707611 39708580 - protein_coding processed_transcript MGP_C3HHeJ_T0068859.1 MGP_C3HHeJ_G0028818.1 mouse_genomes_project 4 150013751 150024793 - MGP_C3HHeJ_P0068859 Agtrap protein_coding protein_coding MGP_C3HHeJ_T0068860.1 MGP_C3HHeJ_G0028818.1 mouse_genomes_project 4 150017287 150021527 - Agtrap protein_coding processed_transcript MGP_C3HHeJ_T0068861.1 MGP_C3HHeJ_G0028818.1 mouse_genomes_project 4 150020660 150024793 - Agtrap protein_coding retained_intron MGP_C3HHeJ_T0014293.1 MGP_C3HHeJ_G0012397.1 mouse_genomes_project 4 20766535 20766952 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007942.1 MGP_C3HHeJ_G0006478.1 mouse_genomes_project 4 152179475 152184862 - Gm13093 lincRNA lincRNA MGP_C3HHeJ_T0004372.1 MGP_C3HHeJ_G0003805.1 mouse_genomes_project 4 41950255 41953634 + antisense antisense MGP_C3HHeJ_T0010526.1 MGP_C3HHeJ_G0008659.1 mouse_genomes_project 4 109199840 109199916 + Mir761 miRNA miRNA MGP_C3HHeJ_T0101990.1 MGP_C3HHeJ_G0039955.1 mouse_genomes_project 4 72976237 72976933 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0066870.1 MGP_C3HHeJ_G0028332.1 mouse_genomes_project 4 117233431 117250339 + MGP_C3HHeJ_P0066870 Mutyh protein_coding protein_coding MGP_C3HHeJ_T0066871.1 MGP_C3HHeJ_G0028332.1 mouse_genomes_project 4 117233433 117246558 + MGP_C3HHeJ_P0066871 Mutyh protein_coding protein_coding MGP_C3HHeJ_T0066872.1 MGP_C3HHeJ_G0028332.1 mouse_genomes_project 4 117233446 117250346 + Mutyh protein_coding retained_intron MGP_C3HHeJ_T0066873.1 MGP_C3HHeJ_G0028332.1 mouse_genomes_project 4 117233456 117249676 + Mutyh protein_coding retained_intron MGP_C3HHeJ_T0066874.1 MGP_C3HHeJ_G0028332.1 mouse_genomes_project 4 117245282 117250291 + MGP_C3HHeJ_P0066874 Mutyh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066875.1 MGP_C3HHeJ_G0028332.1 mouse_genomes_project 4 117245340 117247944 + Mutyh protein_coding retained_intron MGP_C3HHeJ_T0066876.1 MGP_C3HHeJ_G0028332.1 mouse_genomes_project 4 117248602 117250348 + Mutyh protein_coding retained_intron MGP_C3HHeJ_T0014425.1 MGP_C3HHeJ_G0012529.1 mouse_genomes_project 4 70182014 70182485 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065892.1 MGP_C3HHeJ_G0028113.1 mouse_genomes_project 4 86546135 86816975 - MGP_C3HHeJ_P0065892 Slc24a2 protein_coding protein_coding MGP_C3HHeJ_T0065893.1 MGP_C3HHeJ_G0028113.1 mouse_genomes_project 4 86546140 86814479 - MGP_C3HHeJ_P0065893 Slc24a2 protein_coding protein_coding MGP_C3HHeJ_T0065894.1 MGP_C3HHeJ_G0028113.1 mouse_genomes_project 4 86554984 86814393 - MGP_C3HHeJ_P0065894 Slc24a2 protein_coding protein_coding MGP_C3HHeJ_T0065895.1 MGP_C3HHeJ_G0028113.1 mouse_genomes_project 4 86554984 86814389 - MGP_C3HHeJ_P0065895 Slc24a2 protein_coding protein_coding MGP_C3HHeJ_T0065896.1 MGP_C3HHeJ_G0028113.1 mouse_genomes_project 4 86559961 86575172 - Slc24a2 protein_coding processed_transcript MGP_C3HHeJ_T0065897.1 MGP_C3HHeJ_G0028113.1 mouse_genomes_project 4 86592494 86758204 - MGP_C3HHeJ_P0065897 Slc24a2 protein_coding protein_coding MGP_C3HHeJ_T0065898.1 MGP_C3HHeJ_G0028113.1 mouse_genomes_project 4 86639736 86816921 - Slc24a2 protein_coding processed_transcript MGP_C3HHeJ_T0065899.1 MGP_C3HHeJ_G0028113.1 mouse_genomes_project 4 86640124 86816920 - Slc24a2 protein_coding processed_transcript MGP_C3HHeJ_T0065900.1 MGP_C3HHeJ_G0028113.1 mouse_genomes_project 4 86757703 86816965 - Slc24a2 protein_coding processed_transcript MGP_C3HHeJ_T0007750.1 MGP_C3HHeJ_G0006332.1 mouse_genomes_project 4 43197744 43204643 + Gm12678 lincRNA lincRNA MGP_C3HHeJ_T0068645.1 MGP_C3HHeJ_G0028739.1 mouse_genomes_project 4 142360857 142367771 + MGP_C3HHeJ_P0068645 Arhgef19 protein_coding protein_coding MGP_C3HHeJ_T0068646.1 MGP_C3HHeJ_G0028739.1 mouse_genomes_project 4 142361008 142368849 + Arhgef19 protein_coding retained_intron MGP_C3HHeJ_T0068647.1 MGP_C3HHeJ_G0028739.1 mouse_genomes_project 4 142364213 142367715 + MGP_C3HHeJ_P0068647 Arhgef19 protein_coding protein_coding MGP_C3HHeJ_T0068648.1 MGP_C3HHeJ_G0028739.1 mouse_genomes_project 4 142364227 142379449 + MGP_C3HHeJ_P0068648 Arhgef19 protein_coding protein_coding MGP_C3HHeJ_T0068649.1 MGP_C3HHeJ_G0028739.1 mouse_genomes_project 4 142364251 142368360 + MGP_C3HHeJ_P0068649 Arhgef19 protein_coding protein_coding MGP_C3HHeJ_T0068650.1 MGP_C3HHeJ_G0028739.1 mouse_genomes_project 4 142366783 142368803 + MGP_C3HHeJ_P0068650 Arhgef19 protein_coding protein_coding MGP_C3HHeJ_T0068651.1 MGP_C3HHeJ_G0028739.1 mouse_genomes_project 4 142367754 142369468 + MGP_C3HHeJ_P0068651 Arhgef19 protein_coding protein_coding MGP_C3HHeJ_T0068652.1 MGP_C3HHeJ_G0028739.1 mouse_genomes_project 4 142368284 142369335 + Arhgef19 protein_coding retained_intron MGP_C3HHeJ_T0068089.1 MGP_C3HHeJ_G0028607.1 mouse_genomes_project 4 134651542 134665599 - Cd52 protein_coding processed_transcript MGP_C3HHeJ_T0068092.1 MGP_C3HHeJ_G0028607.1 mouse_genomes_project 4 134664093 134665640 - MGP_C3HHeJ_P0068092 Cd52 protein_coding protein_coding MGP_C3HHeJ_T0068093.1 MGP_C3HHeJ_G0028607.1 mouse_genomes_project 4 134664633 134665596 - Cd52 protein_coding processed_transcript MGP_C3HHeJ_T0004530.1 MGP_C3HHeJ_G0003925.1 mouse_genomes_project 4 153532151 153535262 + 4930589P08Rik antisense antisense MGP_C3HHeJ_T0065527.1 MGP_C3HHeJ_G0028032.1 mouse_genomes_project 4 57680163 57716549 + MGP_C3HHeJ_P0065527 Gm20503 protein_coding protein_coding MGP_C3HHeJ_T0100638.1 MGP_C3HHeJ_G0038832.1 mouse_genomes_project 4 65586975 65587108 + Gm25480 snoRNA snoRNA MGP_C3HHeJ_T0064381.1 MGP_C3HHeJ_G0027760.1 mouse_genomes_project 4 8912396 9007219 + MGP_C3HHeJ_P0064381 Rbm12b1 protein_coding protein_coding MGP_C3HHeJ_T0064382.1 MGP_C3HHeJ_G0027760.1 mouse_genomes_project 4 8912398 9013843 + MGP_C3HHeJ_P0064382 Rbm12b1 protein_coding protein_coding MGP_C3HHeJ_T0068668.1 MGP_C3HHeJ_G0028746.1 mouse_genomes_project 4 142581217 142605301 + MGP_C3HHeJ_P0068668 Zbtb17 protein_coding protein_coding MGP_C3HHeJ_T0068669.1 MGP_C3HHeJ_G0028746.1 mouse_genomes_project 4 142581247 142606006 + Zbtb17 protein_coding processed_transcript MGP_C3HHeJ_T0068670.1 MGP_C3HHeJ_G0028746.1 mouse_genomes_project 4 142581262 142605301 + Zbtb17 protein_coding processed_transcript MGP_C3HHeJ_T0068671.1 MGP_C3HHeJ_G0028746.1 mouse_genomes_project 4 142581269 142597405 + Zbtb17 protein_coding processed_transcript MGP_C3HHeJ_T0068672.1 MGP_C3HHeJ_G0028746.1 mouse_genomes_project 4 142601458 142603123 + Zbtb17 protein_coding processed_transcript MGP_C3HHeJ_T0068673.1 MGP_C3HHeJ_G0028746.1 mouse_genomes_project 4 142602893 142604144 + Zbtb17 protein_coding processed_transcript MGP_C3HHeJ_T0068674.1 MGP_C3HHeJ_G0028746.1 mouse_genomes_project 4 142603490 142605145 + Zbtb17 protein_coding processed_transcript MGP_C3HHeJ_T0064911.1 MGP_C3HHeJ_G0027896.1 mouse_genomes_project 4 41186639 41194473 - MGP_C3HHeJ_P0064911 Pigo protein_coding unknown_likely_coding MGP_C3HHeJ_T0064912.1 MGP_C3HHeJ_G0027896.1 mouse_genomes_project 4 41186641 41194082 - MGP_C3HHeJ_P0064912 Pigo protein_coding protein_coding MGP_C3HHeJ_T0064913.1 MGP_C3HHeJ_G0027896.1 mouse_genomes_project 4 41186641 41194821 - MGP_C3HHeJ_P0064913 Pigo protein_coding protein_coding MGP_C3HHeJ_T0064914.1 MGP_C3HHeJ_G0027896.1 mouse_genomes_project 4 41186641 41194758 - MGP_C3HHeJ_P0064914 Pigo protein_coding protein_coding MGP_C3HHeJ_T0064915.1 MGP_C3HHeJ_G0027896.1 mouse_genomes_project 4 41186913 41188713 - Pigo protein_coding processed_transcript MGP_C3HHeJ_T0064916.1 MGP_C3HHeJ_G0027896.1 mouse_genomes_project 4 41193704 41194469 - Pigo protein_coding processed_transcript MGP_C3HHeJ_T0001394.1 MGP_C3HHeJ_G0001324.1 mouse_genomes_project 4 146479331 146481025 - TEC TEC MGP_C3HHeJ_T0064872.1 MGP_C3HHeJ_G0027890.1 mouse_genomes_project 4 41032380 41038580 - MGP_C3HHeJ_P0064872 Fam205c protein_coding protein_coding MGP_C3HHeJ_T0064873.1 MGP_C3HHeJ_G0027890.1 mouse_genomes_project 4 41032579 41038572 - MGP_C3HHeJ_P0064873 Fam205c protein_coding protein_coding MGP_C3HHeJ_T0064874.1 MGP_C3HHeJ_G0027890.1 mouse_genomes_project 4 41035876 41038098 - Fam205c protein_coding processed_transcript MGP_C3HHeJ_T0064875.1 MGP_C3HHeJ_G0027890.1 mouse_genomes_project 4 41036064 41038611 - Fam205c protein_coding processed_transcript MGP_C3HHeJ_T0067073.1 MGP_C3HHeJ_G0028375.1 mouse_genomes_project 4 119242394 119243342 + MGP_C3HHeJ_P0067073 Olfr1339 protein_coding protein_coding MGP_C3HHeJ_T0014466.1 MGP_C3HHeJ_G0012570.1 mouse_genomes_project 4 84696748 84697060 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004350.1 MGP_C3HHeJ_G0003788.1 mouse_genomes_project 4 11822141 11845391 + Gm11837 antisense antisense MGP_C3HHeJ_T0004351.1 MGP_C3HHeJ_G0003788.1 mouse_genomes_project 4 11822894 11845528 + Gm11837 antisense antisense MGP_C3HHeJ_T0004352.1 MGP_C3HHeJ_G0003788.1 mouse_genomes_project 4 11822909 11845403 + Gm11837 antisense antisense MGP_C3HHeJ_T0068367.1 MGP_C3HHeJ_G0028672.1 mouse_genomes_project 4 137695675 137698562 - MGP_C3HHeJ_P0068367 C1qa protein_coding protein_coding MGP_C3HHeJ_T0007799.1 MGP_C3HHeJ_G0006372.1 mouse_genomes_project 4 83540426 83544366 - Gm12414 lincRNA lincRNA MGP_C3HHeJ_T0098292.1 MGP_C3HHeJ_G0036504.1 mouse_genomes_project 4 133317275 133317440 - Gm22767 scaRNA scaRNA MGP_C3HHeJ_T0064682.1 MGP_C3HHeJ_G0027838.1 mouse_genomes_project 4 38045941 38103777 + MGP_C3HHeJ_P0064682 Aco1 protein_coding protein_coding MGP_C3HHeJ_T0064683.1 MGP_C3HHeJ_G0027838.1 mouse_genomes_project 4 38066553 38072187 + Aco1 protein_coding processed_transcript MGP_C3HHeJ_T0064684.1 MGP_C3HHeJ_G0027838.1 mouse_genomes_project 4 38069703 38078702 + Aco1 protein_coding processed_transcript MGP_C3HHeJ_T0064685.1 MGP_C3HHeJ_G0027838.1 mouse_genomes_project 4 38093365 38101843 + Aco1 protein_coding processed_transcript MGP_C3HHeJ_T0014506.1 MGP_C3HHeJ_G0012610.1 mouse_genomes_project 4 100486643 100487580 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068906.1 MGP_C3HHeJ_G0028829.1 mouse_genomes_project 4 150562518 150565641 + MGP_C3HHeJ_P0068906 Srm protein_coding protein_coding MGP_C3HHeJ_T0068907.1 MGP_C3HHeJ_G0028829.1 mouse_genomes_project 4 150562932 150565221 + Srm protein_coding retained_intron MGP_C3HHeJ_T0068908.1 MGP_C3HHeJ_G0028829.1 mouse_genomes_project 4 150564915 150566015 + Srm protein_coding processed_transcript MGP_C3HHeJ_T0066025.1 MGP_C3HHeJ_G0028153.1 mouse_genomes_project 4 95798673 95826466 - MGP_C3HHeJ_P0066025 Cyp2j13 protein_coding protein_coding MGP_C3HHeJ_T0066026.1 MGP_C3HHeJ_G0028153.1 mouse_genomes_project 4 95813802 95844373 - MGP_C3HHeJ_P0066026 Cyp2j13 protein_coding protein_coding MGP_C3HHeJ_T0066027.1 MGP_C3HHeJ_G0028153.1 mouse_genomes_project 4 95816373 95844379 - MGP_C3HHeJ_P0066027 Cyp2j13 protein_coding protein_coding MGP_C3HHeJ_T0066028.1 MGP_C3HHeJ_G0028153.1 mouse_genomes_project 4 95816373 95844357 - MGP_C3HHeJ_P0066028 Cyp2j13 protein_coding protein_coding MGP_C3HHeJ_T0066031.1 MGP_C3HHeJ_G0028155.1 mouse_genomes_project 4 95956913 95990209 - MGP_C3HHeJ_P0066031 Cyp2j7 protein_coding protein_coding MGP_C3HHeJ_T0065586.1 MGP_C3HHeJ_G0028051.1 mouse_genomes_project 4 61332973 61340755 - MGP_C3HHeJ_P0065586 Rnf183 protein_coding protein_coding MGP_C3HHeJ_T0065587.1 MGP_C3HHeJ_G0028051.1 mouse_genomes_project 4 61332975 61340229 - MGP_C3HHeJ_P0065587 Rnf183 protein_coding protein_coding MGP_C3HHeJ_T0065588.1 MGP_C3HHeJ_G0028051.1 mouse_genomes_project 4 61333420 61333993 - MGP_C3HHeJ_P0065588 Rnf183 protein_coding protein_coding MGP_C3HHeJ_T0066401.1 MGP_C3HHeJ_G0028237.1 mouse_genomes_project 4 107785794 107792971 - MGP_C3HHeJ_P0066401 Dmrtb1 protein_coding protein_coding MGP_C3HHeJ_T0066402.1 MGP_C3HHeJ_G0028237.1 mouse_genomes_project 4 107785796 107793621 - MGP_C3HHeJ_P0066402 Dmrtb1 protein_coding protein_coding MGP_C3HHeJ_T0066403.1 MGP_C3HHeJ_G0028237.1 mouse_genomes_project 4 107786408 107790344 - Dmrtb1 protein_coding retained_intron MGP_C3HHeJ_T0014351.1 MGP_C3HHeJ_G0012455.1 mouse_genomes_project 4 37753732 37754420 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014374.1 MGP_C3HHeJ_G0012478.1 mouse_genomes_project 4 47406330 47406668 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067719.1 MGP_C3HHeJ_G0028531.1 mouse_genomes_project 4 129879534 129894618 - MGP_C3HHeJ_P0067719 Txlna protein_coding protein_coding MGP_C3HHeJ_T0067720.1 MGP_C3HHeJ_G0028531.1 mouse_genomes_project 4 129879539 129894195 - Txlna protein_coding retained_intron MGP_C3HHeJ_T0067721.1 MGP_C3HHeJ_G0028531.1 mouse_genomes_project 4 129879539 129894358 - MGP_C3HHeJ_P0067721 Txlna protein_coding protein_coding MGP_C3HHeJ_T0067722.1 MGP_C3HHeJ_G0028531.1 mouse_genomes_project 4 129885622 129894618 - MGP_C3HHeJ_P0067722 Txlna protein_coding protein_coding MGP_C3HHeJ_T0067723.1 MGP_C3HHeJ_G0028531.1 mouse_genomes_project 4 129887837 129894531 - MGP_C3HHeJ_P0067723 Txlna protein_coding protein_coding MGP_C3HHeJ_T0067724.1 MGP_C3HHeJ_G0028531.1 mouse_genomes_project 4 129887853 129894512 - MGP_C3HHeJ_P0067724 Txlna protein_coding protein_coding MGP_C3HHeJ_T0067725.1 MGP_C3HHeJ_G0028531.1 mouse_genomes_project 4 129893016 129894513 - MGP_C3HHeJ_P0067725 Txlna protein_coding protein_coding MGP_C3HHeJ_T0068033.1 MGP_C3HHeJ_G0028598.1 mouse_genomes_project 4 134143949 134173490 - MGP_C3HHeJ_P0068033 Zdhhc18 protein_coding protein_coding MGP_C3HHeJ_T0068034.1 MGP_C3HHeJ_G0028598.1 mouse_genomes_project 4 134147315 134154224 - Zdhhc18 protein_coding retained_intron MGP_C3HHeJ_T0068035.1 MGP_C3HHeJ_G0028598.1 mouse_genomes_project 4 134147385 134151690 - Zdhhc18 protein_coding processed_transcript MGP_C3HHeJ_T0068036.1 MGP_C3HHeJ_G0028598.1 mouse_genomes_project 4 134151971 134153999 - Zdhhc18 protein_coding retained_intron MGP_C3HHeJ_T0068037.1 MGP_C3HHeJ_G0028598.1 mouse_genomes_project 4 134167512 134192459 - Zdhhc18 protein_coding processed_transcript MGP_C3HHeJ_T0101986.1 MGP_C3HHeJ_G0039951.1 mouse_genomes_project 4 51477976 51478927 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0067805.1 MGP_C3HHeJ_G0028548.1 mouse_genomes_project 4 130849769 130893701 - MGP_C3HHeJ_P0067805 Nkain1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067806.1 MGP_C3HHeJ_G0028548.1 mouse_genomes_project 4 130849785 130893908 - MGP_C3HHeJ_P0067806 Nkain1 protein_coding protein_coding MGP_C3HHeJ_T0067807.1 MGP_C3HHeJ_G0028548.1 mouse_genomes_project 4 130858267 130877169 - Nkain1 protein_coding processed_transcript MGP_C3HHeJ_T0065197.1 MGP_C3HHeJ_G0027942.1 mouse_genomes_project 4 43591679 43595692 - MGP_C3HHeJ_P0065197 Exosc3 protein_coding protein_coding MGP_C3HHeJ_T0065198.1 MGP_C3HHeJ_G0027942.1 mouse_genomes_project 4 43591860 43595399 - Exosc3 protein_coding processed_transcript MGP_C3HHeJ_T0065199.1 MGP_C3HHeJ_G0027942.1 mouse_genomes_project 4 43592020 43618151 - MGP_C3HHeJ_P0065199 Exosc3 protein_coding protein_coding MGP_C3HHeJ_T0065200.1 MGP_C3HHeJ_G0027942.1 mouse_genomes_project 4 43592531 43595667 - Exosc3 protein_coding processed_transcript MGP_C3HHeJ_T0017876.1 MGP_C3HHeJ_G0015339.1 mouse_genomes_project 4 132292919 132314069 - Gm12992 processed_transcript processed_transcript MGP_C3HHeJ_T0017877.1 MGP_C3HHeJ_G0015339.1 mouse_genomes_project 4 132306455 132309557 - Gm12992 processed_transcript processed_transcript MGP_C3HHeJ_T0066500.1 MGP_C3HHeJ_G0028254.1 mouse_genomes_project 4 108779572 108793758 + MGP_C3HHeJ_P0066500 Cc2d1b protein_coding protein_coding MGP_C3HHeJ_T0066501.1 MGP_C3HHeJ_G0028254.1 mouse_genomes_project 4 108783144 108785639 + MGP_C3HHeJ_P0066501 Cc2d1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066502.1 MGP_C3HHeJ_G0028254.1 mouse_genomes_project 4 108783195 108793758 + MGP_C3HHeJ_P0066502 Cc2d1b protein_coding protein_coding MGP_C3HHeJ_T0066503.1 MGP_C3HHeJ_G0028254.1 mouse_genomes_project 4 108785387 108786395 + Cc2d1b protein_coding retained_intron MGP_C3HHeJ_T0066504.1 MGP_C3HHeJ_G0028254.1 mouse_genomes_project 4 108785652 108786736 + Cc2d1b protein_coding retained_intron MGP_C3HHeJ_T0066505.1 MGP_C3HHeJ_G0028254.1 mouse_genomes_project 4 108785680 108793740 + Cc2d1b protein_coding retained_intron MGP_C3HHeJ_T0066506.1 MGP_C3HHeJ_G0028254.1 mouse_genomes_project 4 108789222 108790035 + Cc2d1b protein_coding retained_intron MGP_C3HHeJ_T0066507.1 MGP_C3HHeJ_G0028254.1 mouse_genomes_project 4 108789256 108790066 + Cc2d1b protein_coding processed_transcript MGP_C3HHeJ_T0066508.1 MGP_C3HHeJ_G0028254.1 mouse_genomes_project 4 108790082 108792898 + Cc2d1b protein_coding retained_intron MGP_C3HHeJ_T0007896.1 MGP_C3HHeJ_G0006442.1 mouse_genomes_project 4 132075351 132092176 - Gm16080 lincRNA lincRNA MGP_C3HHeJ_T0102024.1 MGP_C3HHeJ_G0039989.1 mouse_genomes_project 4 145309689 145312250 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014600.1 MGP_C3HHeJ_G0012704.1 mouse_genomes_project 4 127433165 127433847 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068831.1 MGP_C3HHeJ_G0028811.1 mouse_genomes_project 4 149799902 149831839 - MGP_C3HHeJ_P0068831 Mfn2 protein_coding protein_coding MGP_C3HHeJ_T0068832.1 MGP_C3HHeJ_G0028811.1 mouse_genomes_project 4 149799902 149831856 - MGP_C3HHeJ_P0068832 Mfn2 protein_coding protein_coding MGP_C3HHeJ_T0068833.1 MGP_C3HHeJ_G0028811.1 mouse_genomes_project 4 149800319 149831850 - MGP_C3HHeJ_P0068833 Mfn2 protein_coding protein_coding MGP_C3HHeJ_T0068834.1 MGP_C3HHeJ_G0028811.1 mouse_genomes_project 4 149807822 149831850 - MGP_C3HHeJ_P0068834 Mfn2 protein_coding protein_coding MGP_C3HHeJ_T0068835.1 MGP_C3HHeJ_G0028811.1 mouse_genomes_project 4 149812035 149813901 - Mfn2 protein_coding processed_transcript MGP_C3HHeJ_T0068836.1 MGP_C3HHeJ_G0028811.1 mouse_genomes_project 4 149813711 149830549 - MGP_C3HHeJ_P0068836 Mfn2 protein_coding protein_coding MGP_C3HHeJ_T0068837.1 MGP_C3HHeJ_G0028811.1 mouse_genomes_project 4 149820683 149831810 - MGP_C3HHeJ_P0068837 Mfn2 protein_coding protein_coding MGP_C3HHeJ_T0014449.1 MGP_C3HHeJ_G0012553.1 mouse_genomes_project 4 76108839 76109184 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099330.1 MGP_C3HHeJ_G0037524.1 mouse_genomes_project 4 22706136 22706299 - Gm24977 snRNA snRNA MGP_C3HHeJ_T0000001.1 MGP_C3HHeJ_G0000001.1 mouse_genomes_project 4 118334321 118367623 - Gm17114 3prime_overlapping_ncRNA 3prime_overlapping_ncRNA MGP_C3HHeJ_T0004400.1 MGP_C3HHeJ_G0003830.1 mouse_genomes_project 4 94712899 94772855 + Gm12694 antisense antisense MGP_C3HHeJ_T0014361.1 MGP_C3HHeJ_G0012465.1 mouse_genomes_project 4 42550681 42551313 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067088.1 MGP_C3HHeJ_G0028386.1 mouse_genomes_project 4 119698522 119702989 - MGP_C3HHeJ_P0067088 Zfp691 protein_coding protein_coding MGP_C3HHeJ_T0067089.1 MGP_C3HHeJ_G0028386.1 mouse_genomes_project 4 119698522 119703328 - MGP_C3HHeJ_P0067089 Zfp691 protein_coding protein_coding MGP_C3HHeJ_T0067090.1 MGP_C3HHeJ_G0028386.1 mouse_genomes_project 4 119698525 119702989 - MGP_C3HHeJ_P0067090 Zfp691 protein_coding protein_coding MGP_C3HHeJ_T0067091.1 MGP_C3HHeJ_G0028386.1 mouse_genomes_project 4 119700006 119702989 - MGP_C3HHeJ_P0067091 Zfp691 protein_coding protein_coding MGP_C3HHeJ_T0069150.1 MGP_C3HHeJ_G0028874.1 mouse_genomes_project 4 154300506 154304692 + MGP_C3HHeJ_P0069150 Tnfrsf25 protein_coding protein_coding MGP_C3HHeJ_T0069151.1 MGP_C3HHeJ_G0028874.1 mouse_genomes_project 4 154300915 154304684 + MGP_C3HHeJ_P0069151 Tnfrsf25 protein_coding protein_coding MGP_C3HHeJ_T0069152.1 MGP_C3HHeJ_G0028874.1 mouse_genomes_project 4 154300971 154301559 + Tnfrsf25 protein_coding processed_transcript MGP_C3HHeJ_T0069153.1 MGP_C3HHeJ_G0028874.1 mouse_genomes_project 4 154302543 154303896 + Tnfrsf25 protein_coding processed_transcript MGP_C3HHeJ_T0007751.1 MGP_C3HHeJ_G0006333.1 mouse_genomes_project 4 43938855 43941225 + lincRNA lincRNA MGP_C3HHeJ_T0068633.1 MGP_C3HHeJ_G0028735.1 mouse_genomes_project 4 142206371 142230556 + MGP_C3HHeJ_P0068633 Spata21 protein_coding protein_coding MGP_C3HHeJ_T0068634.1 MGP_C3HHeJ_G0028735.1 mouse_genomes_project 4 142221787 142229342 + Spata21 protein_coding retained_intron MGP_C3HHeJ_T0098134.1 MGP_C3HHeJ_G0036346.1 mouse_genomes_project 4 81783237 81783342 + n-R5s188 rRNA rRNA MGP_C3HHeJ_T0064664.1 MGP_C3HHeJ_G0027834.1 mouse_genomes_project 4 32737178 32739050 + MGP_C3HHeJ_P0064664 Ifnk protein_coding protein_coding MGP_C3HHeJ_T0065693.1 MGP_C3HHeJ_G0028078.1 mouse_genomes_project 4 69503412 69614602 - MGP_C3HHeJ_P0065693 Megf9 protein_coding protein_coding MGP_C3HHeJ_T0065694.1 MGP_C3HHeJ_G0028078.1 mouse_genomes_project 4 69538537 69614669 - MGP_C3HHeJ_P0065694 Megf9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066709.1 MGP_C3HHeJ_G0028302.1 mouse_genomes_project 4 116111677 116148203 + MGP_C3HHeJ_P0066709 Efcab14 protein_coding protein_coding MGP_C3HHeJ_T0066710.1 MGP_C3HHeJ_G0028302.1 mouse_genomes_project 4 116111712 116132226 + Efcab14 protein_coding processed_transcript MGP_C3HHeJ_T0066711.1 MGP_C3HHeJ_G0028302.1 mouse_genomes_project 4 116111712 116143252 + MGP_C3HHeJ_P0066711 Efcab14 protein_coding protein_coding MGP_C3HHeJ_T0066712.1 MGP_C3HHeJ_G0028302.1 mouse_genomes_project 4 116111713 116127864 + Efcab14 protein_coding processed_transcript MGP_C3HHeJ_T0066713.1 MGP_C3HHeJ_G0028302.1 mouse_genomes_project 4 116112006 116151105 + MGP_C3HHeJ_P0066713 Efcab14 protein_coding protein_coding MGP_C3HHeJ_T0066714.1 MGP_C3HHeJ_G0028302.1 mouse_genomes_project 4 116112376 116147846 + MGP_C3HHeJ_P0066714 Efcab14 protein_coding protein_coding MGP_C3HHeJ_T0066715.1 MGP_C3HHeJ_G0028302.1 mouse_genomes_project 4 116141005 116148956 + Efcab14 protein_coding processed_transcript MGP_C3HHeJ_T0014368.1 MGP_C3HHeJ_G0012472.1 mouse_genomes_project 4 44755397 44755720 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010528.1 MGP_C3HHeJ_G0008661.1 mouse_genomes_project 4 118710088 118710148 - Mir7226 miRNA miRNA MGP_C3HHeJ_T0069296.1 MGP_C3HHeJ_G0028897.1 mouse_genomes_project 4 156567137 156589833 - Arhgef16 protein_coding retained_intron MGP_C3HHeJ_T0069297.1 MGP_C3HHeJ_G0028897.1 mouse_genomes_project 4 156567137 156571147 - Arhgef16 protein_coding retained_intron MGP_C3HHeJ_T0069298.1 MGP_C3HHeJ_G0028897.1 mouse_genomes_project 4 156567137 156589995 - MGP_C3HHeJ_P0069298 Arhgef16 protein_coding protein_coding MGP_C3HHeJ_T0069299.1 MGP_C3HHeJ_G0028897.1 mouse_genomes_project 4 156567401 156591602 - MGP_C3HHeJ_P0069299 Arhgef16 protein_coding protein_coding MGP_C3HHeJ_T0069300.1 MGP_C3HHeJ_G0028897.1 mouse_genomes_project 4 156570665 156577016 - Arhgef16 protein_coding processed_transcript MGP_C3HHeJ_T0069301.1 MGP_C3HHeJ_G0028897.1 mouse_genomes_project 4 156576967 156589833 - MGP_C3HHeJ_P0069301 Arhgef16 protein_coding protein_coding MGP_C3HHeJ_T0069302.1 MGP_C3HHeJ_G0028897.1 mouse_genomes_project 4 156580984 156591615 - MGP_C3HHeJ_P0069302 Arhgef16 protein_coding protein_coding MGP_C3HHeJ_T0099389.1 MGP_C3HHeJ_G0037583.1 mouse_genomes_project 4 126265455 126265552 - Gm25323 snRNA snRNA MGP_C3HHeJ_T0100602.1 MGP_C3HHeJ_G0038796.1 mouse_genomes_project 4 3301029 3301161 - Gm22473 snoRNA snoRNA MGP_C3HHeJ_T0065398.1 MGP_C3HHeJ_G0027999.1 mouse_genomes_project 4 51575612 51702976 - MGP_C3HHeJ_P0065398 Abca1 protein_coding protein_coding MGP_C3HHeJ_T0065399.1 MGP_C3HHeJ_G0027999.1 mouse_genomes_project 4 51580313 51585738 - Abca1 protein_coding processed_transcript MGP_C3HHeJ_T0067071.1 MGP_C3HHeJ_G0028373.1 mouse_genomes_project 4 119218666 119219605 + MGP_C3HHeJ_P0067071 Olfr1341 protein_coding protein_coding MGP_C3HHeJ_T0068564.1 MGP_C3HHeJ_G0028719.1 mouse_genomes_project 4 140674643 140692048 + MGP_C3HHeJ_P0068564 Tas1r2 protein_coding protein_coding MGP_C3HHeJ_T0068565.1 MGP_C3HHeJ_G0028719.1 mouse_genomes_project 4 140674654 140691628 + MGP_C3HHeJ_P0068565 Tas1r2 protein_coding protein_coding MGP_C3HHeJ_T0067183.1 MGP_C3HHeJ_G0028404.1 mouse_genomes_project 4 120717365 120723528 + MGP_C3HHeJ_P0067183 Edn2 protein_coding protein_coding MGP_C3HHeJ_T0068268.1 MGP_C3HHeJ_G0028649.1 mouse_genomes_project 4 136618731 136645322 + MGP_C3HHeJ_P0068268 Cnr2 protein_coding protein_coding MGP_C3HHeJ_T0068269.1 MGP_C3HHeJ_G0028649.1 mouse_genomes_project 4 136635972 136645322 + MGP_C3HHeJ_P0068269 Cnr2 protein_coding protein_coding MGP_C3HHeJ_T0064364.1 MGP_C3HHeJ_G0027755.1 mouse_genomes_project 4 8519141 8529433 + MGP_C3HHeJ_P0064364 Gem protein_coding protein_coding MGP_C3HHeJ_T0064365.1 MGP_C3HHeJ_G0027755.1 mouse_genomes_project 4 8520491 8529433 + MGP_C3HHeJ_P0064365 Gem protein_coding protein_coding MGP_C3HHeJ_T0007732.1 MGP_C3HHeJ_G0006314.1 mouse_genomes_project 4 21048622 21049089 - Gm28448 lincRNA lincRNA MGP_C3HHeJ_T0068469.1 MGP_C3HHeJ_G0028694.1 mouse_genomes_project 4 139357433 139365881 + MGP_C3HHeJ_P0068469 Mul1 protein_coding protein_coding MGP_C3HHeJ_T0068470.1 MGP_C3HHeJ_G0028694.1 mouse_genomes_project 4 139357439 139365887 + MGP_C3HHeJ_P0068470 Mul1 protein_coding protein_coding MGP_C3HHeJ_T0068471.1 MGP_C3HHeJ_G0028694.1 mouse_genomes_project 4 139357485 139362975 + MGP_C3HHeJ_P0068471 Mul1 protein_coding protein_coding MGP_C3HHeJ_T0067389.1 MGP_C3HHeJ_G0028462.1 mouse_genomes_project 4 125523413 125747162 + MGP_C3HHeJ_P0067389 Grik3 protein_coding protein_coding MGP_C3HHeJ_T0068146.1 MGP_C3HHeJ_G0028619.1 mouse_genomes_project 4 134903638 134918734 + MGP_C3HHeJ_P0068146 Trim63 protein_coding protein_coding MGP_C3HHeJ_T0068147.1 MGP_C3HHeJ_G0028619.1 mouse_genomes_project 4 134903640 134918712 + MGP_C3HHeJ_P0068147 Trim63 protein_coding protein_coding MGP_C3HHeJ_T0068148.1 MGP_C3HHeJ_G0028619.1 mouse_genomes_project 4 134903730 134905896 + Trim63 protein_coding retained_intron MGP_C3HHeJ_T0068149.1 MGP_C3HHeJ_G0028619.1 mouse_genomes_project 4 134908506 134918731 + Trim63 protein_coding processed_transcript MGP_C3HHeJ_T0068793.1 MGP_C3HHeJ_G0028796.1 mouse_genomes_project 4 146080854 146090917 - MGP_C3HHeJ_P0068793 Gm13124 protein_coding protein_coding MGP_C3HHeJ_T0011463.1 MGP_C3HHeJ_G0009596.1 mouse_genomes_project 4 29948991 29949258 + Gm24371 misc_RNA misc_RNA MGP_C3HHeJ_T0010549.1 MGP_C3HHeJ_G0008682.1 mouse_genomes_project 4 135076084 135076175 + Gm23634 miRNA miRNA MGP_C3HHeJ_T0007719.1 MGP_C3HHeJ_G0006302.1 mouse_genomes_project 4 8799229 8806958 + Gm26895 lincRNA lincRNA MGP_C3HHeJ_T0100599.1 MGP_C3HHeJ_G0038793.1 mouse_genomes_project 4 518506 518643 - Gm24125 snoRNA snoRNA MGP_C3HHeJ_T0100668.1 MGP_C3HHeJ_G0038862.1 mouse_genomes_project 4 126930895 126931025 - Gm24161 snoRNA snoRNA MGP_C3HHeJ_T0066603.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 110622148 111165027 + MGP_C3HHeJ_P0066603 Agbl4 protein_coding protein_coding MGP_C3HHeJ_T0066604.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 110622185 111869875 + MGP_C3HHeJ_P0066604 Agbl4 protein_coding protein_coding MGP_C3HHeJ_T0066605.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 110622185 110871255 + MGP_C3HHeJ_P0066605 Agbl4 protein_coding protein_coding MGP_C3HHeJ_T0066606.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 110622185 111769634 + MGP_C3HHeJ_P0066606 Agbl4 protein_coding protein_coding MGP_C3HHeJ_T0066607.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 110622278 111863180 + MGP_C3HHeJ_P0066607 Agbl4 protein_coding protein_coding MGP_C3HHeJ_T0066608.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 110622278 111863180 + MGP_C3HHeJ_P0066608 Agbl4 protein_coding protein_coding MGP_C3HHeJ_T0066609.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 111326150 111466422 + Agbl4 protein_coding processed_transcript MGP_C3HHeJ_T0066610.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 111326220 111826112 + MGP_C3HHeJ_P0066610 Agbl4 protein_coding protein_coding MGP_C3HHeJ_T0066617.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 111769318 111862239 + Agbl4 protein_coding processed_transcript MGP_C3HHeJ_T0066618.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 111769348 111863177 + Agbl4 protein_coding processed_transcript MGP_C3HHeJ_T0014234.1 MGP_C3HHeJ_G0012338.1 mouse_genomes_project 4 4848151 4848611 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007822.1 MGP_C3HHeJ_G0006392.1 mouse_genomes_project 4 101266258 101275887 - E130102H24Rik lincRNA lincRNA MGP_C3HHeJ_T0007824.1 MGP_C3HHeJ_G0006392.1 mouse_genomes_project 4 101275680 101276374 - E130102H24Rik lincRNA lincRNA MGP_C3HHeJ_T0014385.1 MGP_C3HHeJ_G0012489.1 mouse_genomes_project 4 51361719 51362360 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068769.1 MGP_C3HHeJ_G0028779.1 mouse_genomes_project 4 145137049 145140773 - protein_coding retained_intron MGP_C3HHeJ_T0065722.1 MGP_C3HHeJ_G0028086.1 mouse_genomes_project 4 74416493 74417445 - MGP_C3HHeJ_P0065722 Tmem261 protein_coding protein_coding MGP_C3HHeJ_T0064454.1 MGP_C3HHeJ_G0027786.1 mouse_genomes_project 4 17070622 17095452 + MGP_C3HHeJ_P0064454 Ggh protein_coding protein_coding MGP_C3HHeJ_T0014502.1 MGP_C3HHeJ_G0012606.1 mouse_genomes_project 4 99334183 99334580 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004348.1 MGP_C3HHeJ_G0003786.1 mouse_genomes_project 4 8414674 8418543 - Gm11832 antisense antisense MGP_C3HHeJ_T0065634.1 MGP_C3HHeJ_G0028062.1 mouse_genomes_project 4 62129060 62209813 + Col27a1 protein_coding retained_intron MGP_C3HHeJ_T0065635.1 MGP_C3HHeJ_G0028062.1 mouse_genomes_project 4 62130468 62191381 + Col27a1 protein_coding retained_intron MGP_C3HHeJ_T0065636.1 MGP_C3HHeJ_G0028062.1 mouse_genomes_project 4 62130491 62255263 + MGP_C3HHeJ_P0065636 Col27a1 protein_coding protein_coding MGP_C3HHeJ_T0065637.1 MGP_C3HHeJ_G0028062.1 mouse_genomes_project 4 62130882 62255262 + MGP_C3HHeJ_P0065637 Col27a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0065638.1 MGP_C3HHeJ_G0028062.1 mouse_genomes_project 4 62149314 62253985 + MGP_C3HHeJ_P0065638 Col27a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065639.1 MGP_C3HHeJ_G0028062.1 mouse_genomes_project 4 62199012 62253992 + MGP_C3HHeJ_P0065639 Col27a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065640.1 MGP_C3HHeJ_G0028062.1 mouse_genomes_project 4 62199858 62254021 + Col27a1 protein_coding retained_intron MGP_C3HHeJ_T0065641.1 MGP_C3HHeJ_G0028062.1 mouse_genomes_project 4 62251264 62254410 + Col27a1 protein_coding processed_transcript MGP_C3HHeJ_T0007774.1 MGP_C3HHeJ_G0006351.1 mouse_genomes_project 4 56015203 56018618 - 1700042G15Rik lincRNA lincRNA MGP_C3HHeJ_T0007775.1 MGP_C3HHeJ_G0006351.1 mouse_genomes_project 4 56015527 56018637 - 1700042G15Rik lincRNA lincRNA MGP_C3HHeJ_T0007776.1 MGP_C3HHeJ_G0006351.1 mouse_genomes_project 4 56015629 56018597 - 1700042G15Rik lincRNA lincRNA MGP_C3HHeJ_T0065947.1 MGP_C3HHeJ_G0028137.1 mouse_genomes_project 4 89911005 89917869 + MGP_C3HHeJ_P0065947 Zfp352 protein_coding protein_coding MGP_C3HHeJ_T0065948.1 MGP_C3HHeJ_G0028137.1 mouse_genomes_project 4 89915780 89917436 + MGP_C3HHeJ_P0065948 Zfp352 protein_coding protein_coding MGP_C3HHeJ_T0014292.1 MGP_C3HHeJ_G0012396.1 mouse_genomes_project 4 20630706 20631621 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065351.1 MGP_C3HHeJ_G0027982.1 mouse_genomes_project 4 47984303 47992801 - MGP_C3HHeJ_P0065351 Mrpl50 protein_coding protein_coding MGP_C3HHeJ_T0064928.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41201407 41217103 - MGP_C3HHeJ_P0064928 Fam214b protein_coding protein_coding MGP_C3HHeJ_T0064929.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41201407 41217498 - MGP_C3HHeJ_P0064929 Fam214b protein_coding protein_coding MGP_C3HHeJ_T0064930.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41201407 41211581 - MGP_C3HHeJ_P0064930 Fam214b protein_coding protein_coding MGP_C3HHeJ_T0064931.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41201407 41217075 - MGP_C3HHeJ_P0064931 Fam214b protein_coding protein_coding MGP_C3HHeJ_T0064932.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41201407 41211584 - MGP_C3HHeJ_P0064932 Fam214b protein_coding protein_coding MGP_C3HHeJ_T0064933.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41201407 41217498 - MGP_C3HHeJ_P0064933 Fam214b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064934.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41206000 41211588 - MGP_C3HHeJ_P0064934 Fam214b protein_coding protein_coding MGP_C3HHeJ_T0064935.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41206281 41208614 - MGP_C3HHeJ_P0064935 Fam214b protein_coding protein_coding MGP_C3HHeJ_T0064936.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41206384 41210624 - MGP_C3HHeJ_P0064936 Fam214b protein_coding protein_coding MGP_C3HHeJ_T0064937.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41206658 41217037 - Fam214b protein_coding processed_transcript MGP_C3HHeJ_T0004401.1 MGP_C3HHeJ_G0003831.1 mouse_genomes_project 4 94795853 94812658 + Junos antisense antisense MGP_C3HHeJ_T0004402.1 MGP_C3HHeJ_G0003831.1 mouse_genomes_project 4 94797292 94804959 + Junos antisense antisense MGP_C3HHeJ_T0004403.1 MGP_C3HHeJ_G0003831.1 mouse_genomes_project 4 94797581 94912501 + Junos antisense antisense MGP_C3HHeJ_T0004404.1 MGP_C3HHeJ_G0003831.1 mouse_genomes_project 4 94820807 94909690 + Junos antisense antisense MGP_C3HHeJ_T0004405.1 MGP_C3HHeJ_G0003831.1 mouse_genomes_project 4 94820954 94886610 + Junos antisense antisense MGP_C3HHeJ_T0004406.1 MGP_C3HHeJ_G0003831.1 mouse_genomes_project 4 94841109 94914830 + Junos antisense antisense MGP_C3HHeJ_T0004407.1 MGP_C3HHeJ_G0003831.1 mouse_genomes_project 4 94846281 94919497 + Junos antisense antisense MGP_C3HHeJ_T0004408.1 MGP_C3HHeJ_G0003831.1 mouse_genomes_project 4 94872852 94920894 + Junos antisense antisense MGP_C3HHeJ_T0014337.1 MGP_C3HHeJ_G0012441.1 mouse_genomes_project 4 32485359 32487410 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010520.1 MGP_C3HHeJ_G0008653.1 mouse_genomes_project 4 94418477 94418558 + Mir872 miRNA miRNA MGP_C3HHeJ_T0068794.1 MGP_C3HHeJ_G0028797.1 mouse_genomes_project 4 146144029 146153711 + MGP_C3HHeJ_P0068794 Gm13177 protein_coding protein_coding MGP_C3HHeJ_T0100671.1 MGP_C3HHeJ_G0038865.1 mouse_genomes_project 4 131095581 131095664 + Gm24091 snoRNA snoRNA MGP_C3HHeJ_T0067359.1 MGP_C3HHeJ_G0028454.1 mouse_genomes_project 4 124892116 124897986 + MGP_C3HHeJ_P0067359 protein_coding protein_coding MGP_C3HHeJ_T0067360.1 MGP_C3HHeJ_G0028454.1 mouse_genomes_project 4 124896929 124928003 + MGP_C3HHeJ_P0067360 protein_coding protein_coding MGP_C3HHeJ_T0067361.1 MGP_C3HHeJ_G0028454.1 mouse_genomes_project 4 124909747 124913675 + protein_coding processed_transcript MGP_C3HHeJ_T0065945.1 MGP_C3HHeJ_G0028136.1 mouse_genomes_project 4 89363555 89379916 + Dmrta1 protein_coding processed_transcript MGP_C3HHeJ_T0065946.1 MGP_C3HHeJ_G0028136.1 mouse_genomes_project 4 89376220 89382777 + MGP_C3HHeJ_P0065946 Dmrta1 protein_coding protein_coding MGP_C3HHeJ_T0007782.1 MGP_C3HHeJ_G0006357.1 mouse_genomes_project 4 62530905 62540174 - lincRNA lincRNA MGP_C3HHeJ_T0068761.1 MGP_C3HHeJ_G0028771.1 mouse_genomes_project 4 144936693 144941499 - MGP_C3HHeJ_P0068761 Gm13088 protein_coding protein_coding MGP_C3HHeJ_T0065932.1 MGP_C3HHeJ_G0028125.1 mouse_genomes_project 4 88338997 88340035 + MGP_C3HHeJ_P0065932 Gm26566 protein_coding protein_coding MGP_C3HHeJ_T0100640.1 MGP_C3HHeJ_G0038834.1 mouse_genomes_project 4 72243012 72243139 + Gm25769 snoRNA snoRNA MGP_C3HHeJ_T0068764.1 MGP_C3HHeJ_G0028774.1 mouse_genomes_project 4 144979462 144985675 - MGP_C3HHeJ_P0068764 Gm13089 protein_coding protein_coding MGP_C3HHeJ_T0017824.1 MGP_C3HHeJ_G0015307.1 mouse_genomes_project 4 44867117 44870982 + Gm16731 processed_transcript processed_transcript MGP_C3HHeJ_T0067251.1 MGP_C3HHeJ_G0028426.1 mouse_genomes_project 4 122833394 122848085 - Mfsd2a protein_coding processed_transcript MGP_C3HHeJ_T0067252.1 MGP_C3HHeJ_G0028426.1 mouse_genomes_project 4 122833394 122848121 - MGP_C3HHeJ_P0067252 Mfsd2a protein_coding protein_coding MGP_C3HHeJ_T0067253.1 MGP_C3HHeJ_G0028426.1 mouse_genomes_project 4 122843671 122846921 - Mfsd2a protein_coding processed_transcript MGP_C3HHeJ_T0067254.1 MGP_C3HHeJ_G0028426.1 mouse_genomes_project 4 122843698 122848121 - MGP_C3HHeJ_P0067254 Mfsd2a protein_coding protein_coding MGP_C3HHeJ_T0007853.1 MGP_C3HHeJ_G0006415.1 mouse_genomes_project 4 121187130 121194195 + Gm12860 lincRNA lincRNA MGP_C3HHeJ_T0066276.1 MGP_C3HHeJ_G0028217.1 mouse_genomes_project 4 106662160 106689232 - MGP_C3HHeJ_P0066276 Lexm protein_coding protein_coding MGP_C3HHeJ_T0066277.1 MGP_C3HHeJ_G0028217.1 mouse_genomes_project 4 106662160 106689235 - MGP_C3HHeJ_P0066277 Lexm protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066278.1 MGP_C3HHeJ_G0028217.1 mouse_genomes_project 4 106662160 106679456 - MGP_C3HHeJ_P0066278 Lexm protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066279.1 MGP_C3HHeJ_G0028217.1 mouse_genomes_project 4 106662561 106689232 - MGP_C3HHeJ_P0066279 Lexm protein_coding protein_coding MGP_C3HHeJ_T0068187.1 MGP_C3HHeJ_G0028631.1 mouse_genomes_project 4 135422962 135431409 - Tmem57 protein_coding processed_transcript MGP_C3HHeJ_T0068188.1 MGP_C3HHeJ_G0028631.1 mouse_genomes_project 4 135422962 135479177 - MGP_C3HHeJ_P0068188 Tmem57 protein_coding protein_coding MGP_C3HHeJ_T0068189.1 MGP_C3HHeJ_G0028631.1 mouse_genomes_project 4 135431389 135478981 - MGP_C3HHeJ_P0068189 Tmem57 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068190.1 MGP_C3HHeJ_G0028631.1 mouse_genomes_project 4 135450732 135479095 - MGP_C3HHeJ_P0068190 Tmem57 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068191.1 MGP_C3HHeJ_G0028631.1 mouse_genomes_project 4 135461168 135479149 - Tmem57 protein_coding retained_intron MGP_C3HHeJ_T0066029.1 MGP_C3HHeJ_G0028154.1 mouse_genomes_project 4 95861557 95903539 - MGP_C3HHeJ_P0066029 Cyp2j12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066030.1 MGP_C3HHeJ_G0028154.1 mouse_genomes_project 4 95861814 95903525 - MGP_C3HHeJ_P0066030 Cyp2j12 protein_coding protein_coding MGP_C3HHeJ_T0069036.1 MGP_C3HHeJ_G0028851.1 mouse_genomes_project 4 152152951 152171492 + MGP_C3HHeJ_P0069036 Gpr157 protein_coding protein_coding MGP_C3HHeJ_T0014238.1 MGP_C3HHeJ_G0012342.1 mouse_genomes_project 4 6696504 6697427 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014567.1 MGP_C3HHeJ_G0012671.1 mouse_genomes_project 4 119507854 119508860 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065627.1 MGP_C3HHeJ_G0028060.1 mouse_genomes_project 4 62058510 62069323 - MGP_C3HHeJ_P0065627 Ambp protein_coding protein_coding MGP_C3HHeJ_T0065628.1 MGP_C3HHeJ_G0028060.1 mouse_genomes_project 4 62067883 62069949 - MGP_C3HHeJ_P0065628 Ambp protein_coding protein_coding MGP_C3HHeJ_T0007764.1 MGP_C3HHeJ_G0006342.1 mouse_genomes_project 4 53202315 53202791 - Gm29067 lincRNA lincRNA MGP_C3HHeJ_T0101983.1 MGP_C3HHeJ_G0039948.1 mouse_genomes_project 4 41962579 41962881 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007847.1 MGP_C3HHeJ_G0006409.1 mouse_genomes_project 4 116193487 116197295 + Gm12847 lincRNA lincRNA MGP_C3HHeJ_T0101207.1 MGP_C3HHeJ_G0039343.1 mouse_genomes_project 4 42340478 42343210 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101208.1 MGP_C3HHeJ_G0039343.1 mouse_genomes_project 4 42341823 42342630 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0014472.1 MGP_C3HHeJ_G0012576.1 mouse_genomes_project 4 88217021 88219309 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065349.1 MGP_C3HHeJ_G0027981.1 mouse_genomes_project 4 47960724 47977798 - MGP_C3HHeJ_P0065349 Baat protein_coding protein_coding MGP_C3HHeJ_T0065350.1 MGP_C3HHeJ_G0027981.1 mouse_genomes_project 4 47961122 47974401 - MGP_C3HHeJ_P0065350 Baat protein_coding protein_coding MGP_C3HHeJ_T0098129.1 MGP_C3HHeJ_G0036341.1 mouse_genomes_project 4 41886008 41886140 + Gm23257 rRNA rRNA MGP_C3HHeJ_T0099359.1 MGP_C3HHeJ_G0037553.1 mouse_genomes_project 4 82928860 82929001 - Gm25899 snRNA snRNA MGP_C3HHeJ_T0069229.1 MGP_C3HHeJ_G0028885.1 mouse_genomes_project 4 154680013 154766537 + Nphp4 protein_coding processed_transcript MGP_C3HHeJ_T0069230.1 MGP_C3HHeJ_G0028885.1 mouse_genomes_project 4 154681214 154766266 + MGP_C3HHeJ_P0069230 Nphp4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069231.1 MGP_C3HHeJ_G0028885.1 mouse_genomes_project 4 154681449 154766671 + MGP_C3HHeJ_P0069231 Nphp4 protein_coding protein_coding MGP_C3HHeJ_T0069232.1 MGP_C3HHeJ_G0028885.1 mouse_genomes_project 4 154681485 154694413 + Nphp4 protein_coding processed_transcript MGP_C3HHeJ_T0069233.1 MGP_C3HHeJ_G0028885.1 mouse_genomes_project 4 154687677 154766535 + MGP_C3HHeJ_P0069233 Nphp4 protein_coding protein_coding MGP_C3HHeJ_T0069234.1 MGP_C3HHeJ_G0028885.1 mouse_genomes_project 4 154692317 154702184 + Nphp4 protein_coding processed_transcript MGP_C3HHeJ_T0069235.1 MGP_C3HHeJ_G0028885.1 mouse_genomes_project 4 154706856 154721852 + Nphp4 protein_coding processed_transcript MGP_C3HHeJ_T0102023.1 MGP_C3HHeJ_G0039988.1 mouse_genomes_project 4 144729872 144730373 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007736.1 MGP_C3HHeJ_G0006318.1 mouse_genomes_project 4 26365027 26366085 + Gm11916 lincRNA lincRNA MGP_C3HHeJ_T0010574.1 MGP_C3HHeJ_G0008707.1 mouse_genomes_project 4 158601611 158601668 - Mir7658 miRNA miRNA MGP_C3HHeJ_T0014263.1 MGP_C3HHeJ_G0012367.1 mouse_genomes_project 4 13028083 13028213 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099382.1 MGP_C3HHeJ_G0037576.1 mouse_genomes_project 4 117666075 117666191 + Gm23143 snRNA snRNA MGP_C3HHeJ_T0064537.1 MGP_C3HHeJ_G0027804.1 mouse_genomes_project 4 23472990 23496319 - MGP_C3HHeJ_P0064537 Manea protein_coding protein_coding MGP_C3HHeJ_T0064538.1 MGP_C3HHeJ_G0027804.1 mouse_genomes_project 4 23476529 23490377 - Manea protein_coding processed_transcript MGP_C3HHeJ_T0064539.1 MGP_C3HHeJ_G0027804.1 mouse_genomes_project 4 23489941 23496282 - Manea protein_coding processed_transcript MGP_C3HHeJ_T0064540.1 MGP_C3HHeJ_G0027804.1 mouse_genomes_project 4 23490232 23496319 - MGP_C3HHeJ_P0064540 Manea protein_coding protein_coding MGP_C3HHeJ_T0064425.1 MGP_C3HHeJ_G0027773.1 mouse_genomes_project 4 12849248 12885221 + MGP_C3HHeJ_P0064425 Nbn protein_coding protein_coding MGP_C3HHeJ_T0064426.1 MGP_C3HHeJ_G0027773.1 mouse_genomes_project 4 12849290 12873991 + MGP_C3HHeJ_P0064426 Nbn protein_coding protein_coding MGP_C3HHeJ_T0069445.1 MGP_C3HHeJ_G0028922.1 mouse_genomes_project 4 157984029 157986759 - MGP_C3HHeJ_P0069445 Mmp23 protein_coding protein_coding MGP_C3HHeJ_T0069446.1 MGP_C3HHeJ_G0028922.1 mouse_genomes_project 4 157984031 157985400 - Mmp23 protein_coding retained_intron MGP_C3HHeJ_T0069447.1 MGP_C3HHeJ_G0028922.1 mouse_genomes_project 4 157985627 157986582 - Mmp23 protein_coding retained_intron MGP_C3HHeJ_T0069448.1 MGP_C3HHeJ_G0028922.1 mouse_genomes_project 4 157985644 157986267 - Mmp23 protein_coding retained_intron MGP_C3HHeJ_T0064837.1 MGP_C3HHeJ_G0027878.1 mouse_genomes_project 4 39750415 39759139 - MGP_C3HHeJ_P0064837 Dctn3 protein_coding protein_coding MGP_C3HHeJ_T0064838.1 MGP_C3HHeJ_G0027878.1 mouse_genomes_project 4 39750415 39759132 - MGP_C3HHeJ_P0064838 Dctn3 protein_coding protein_coding MGP_C3HHeJ_T0064839.1 MGP_C3HHeJ_G0027878.1 mouse_genomes_project 4 39755754 39759106 - Dctn3 protein_coding processed_transcript MGP_C3HHeJ_T0007722.1 MGP_C3HHeJ_G0006305.1 mouse_genomes_project 4 9913687 9936380 + Gm11820 lincRNA lincRNA MGP_C3HHeJ_T0007939.1 MGP_C3HHeJ_G0006475.1 mouse_genomes_project 4 151826889 151833970 + Gm16188 lincRNA lincRNA MGP_C3HHeJ_T0064207.1 MGP_C3HHeJ_G0027726.1 mouse_genomes_project 4 562593 600216 - MGP_C3HHeJ_P0064207 Plag1 protein_coding protein_coding MGP_C3HHeJ_T0064208.1 MGP_C3HHeJ_G0027726.1 mouse_genomes_project 4 566487 600239 - MGP_C3HHeJ_P0064208 Plag1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064209.1 MGP_C3HHeJ_G0027726.1 mouse_genomes_project 4 567146 600257 - MGP_C3HHeJ_P0064209 Plag1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064210.1 MGP_C3HHeJ_G0027726.1 mouse_genomes_project 4 573454 600227 - Plag1 protein_coding retained_intron MGP_C3HHeJ_T0068300.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136760091 136760629 - Rpl11 protein_coding processed_transcript MGP_C3HHeJ_T0068301.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136760091 136789713 - Rpl11 protein_coding processed_transcript MGP_C3HHeJ_T0068302.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136785944 136790421 - MGP_C3HHeJ_P0068302 Rpl11 protein_coding protein_coding MGP_C3HHeJ_T0068303.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136786160 136786740 - Rpl11 protein_coding processed_transcript MGP_C3HHeJ_T0068304.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136786203 136790024 - Rpl11 protein_coding processed_transcript MGP_C3HHeJ_T0068305.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136786493 136790118 - MGP_C3HHeJ_P0068305 Rpl11 protein_coding protein_coding MGP_C3HHeJ_T0068306.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136786545 136789782 - Rpl11 protein_coding processed_transcript MGP_C3HHeJ_T0068307.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136786846 136789734 - Rpl11 protein_coding processed_transcript MGP_C3HHeJ_T0068308.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136787241 136789744 - Rpl11 protein_coding processed_transcript MGP_C3HHeJ_T0068309.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136787454 136790456 - Rpl11 protein_coding processed_transcript MGP_C3HHeJ_T0064374.1 MGP_C3HHeJ_G0027758.1 mouse_genomes_project 4 8798120 8799824 - MGP_C3HHeJ_P0064374 Gm10604 protein_coding protein_coding MGP_C3HHeJ_T0068784.1 MGP_C3HHeJ_G0028788.1 mouse_genomes_project 4 145839321 145859179 + MGP_C3HHeJ_P0068784 protein_coding protein_coding MGP_C3HHeJ_T0064270.1 MGP_C3HHeJ_G0027740.1 mouse_genomes_project 4 5375728 5445239 + Chd7 protein_coding retained_intron MGP_C3HHeJ_T0064271.1 MGP_C3HHeJ_G0027740.1 mouse_genomes_project 4 5376817 5476192 + MGP_C3HHeJ_P0064271 Chd7 protein_coding protein_coding MGP_C3HHeJ_T0064272.1 MGP_C3HHeJ_G0027740.1 mouse_genomes_project 4 5377260 5558552 + MGP_C3HHeJ_P0064272 Chd7 protein_coding protein_coding MGP_C3HHeJ_T0064273.1 MGP_C3HHeJ_G0027740.1 mouse_genomes_project 4 5377704 5559400 + MGP_C3HHeJ_P0064273 Chd7 protein_coding protein_coding MGP_C3HHeJ_T0064274.1 MGP_C3HHeJ_G0027740.1 mouse_genomes_project 4 5396709 5440895 + MGP_C3HHeJ_P0064274 Chd7 protein_coding protein_coding MGP_C3HHeJ_T0064275.1 MGP_C3HHeJ_G0027740.1 mouse_genomes_project 4 5440770 5558966 + MGP_C3HHeJ_P0064275 Chd7 protein_coding protein_coding MGP_C3HHeJ_T0064276.1 MGP_C3HHeJ_G0027740.1 mouse_genomes_project 4 5440837 5559397 + MGP_C3HHeJ_P0064276 Chd7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0064277.1 MGP_C3HHeJ_G0027740.1 mouse_genomes_project 4 5531284 5535675 + Chd7 protein_coding processed_transcript MGP_C3HHeJ_T0064769.1 MGP_C3HHeJ_G0027860.1 mouse_genomes_project 4 39472069 39479543 - MGP_C3HHeJ_P0064769 AI464131 protein_coding protein_coding MGP_C3HHeJ_T0064770.1 MGP_C3HHeJ_G0027860.1 mouse_genomes_project 4 39475961 39479135 - MGP_C3HHeJ_P0064770 AI464131 protein_coding protein_coding MGP_C3HHeJ_T0066878.1 MGP_C3HHeJ_G0028334.1 mouse_genomes_project 4 117318591 117432171 + MGP_C3HHeJ_P0066878 Zswim5 protein_coding protein_coding MGP_C3HHeJ_T0014412.1 MGP_C3HHeJ_G0012516.1 mouse_genomes_project 4 61861146 61861810 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064840.1 MGP_C3HHeJ_G0027879.1 mouse_genomes_project 4 39759804 39769906 - MGP_C3HHeJ_P0064840 Arid3c protein_coding protein_coding MGP_C3HHeJ_T0064841.1 MGP_C3HHeJ_G0027879.1 mouse_genomes_project 4 39760107 39766250 - MGP_C3HHeJ_P0064841 Arid3c protein_coding protein_coding MGP_C3HHeJ_T0064842.1 MGP_C3HHeJ_G0027879.1 mouse_genomes_project 4 39760107 39766250 - MGP_C3HHeJ_P0064842 Arid3c protein_coding protein_coding MGP_C3HHeJ_T0064843.1 MGP_C3HHeJ_G0027879.1 mouse_genomes_project 4 39765889 39769906 - MGP_C3HHeJ_P0064843 Arid3c protein_coding protein_coding MGP_C3HHeJ_T0066572.1 MGP_C3HHeJ_G0028266.1 mouse_genomes_project 4 109604488 109627172 + MGP_C3HHeJ_P0066572 Ttc39a protein_coding protein_coding MGP_C3HHeJ_T0066573.1 MGP_C3HHeJ_G0028266.1 mouse_genomes_project 4 109604952 109643622 + MGP_C3HHeJ_P0066573 Ttc39a protein_coding protein_coding MGP_C3HHeJ_T0066574.1 MGP_C3HHeJ_G0028266.1 mouse_genomes_project 4 109604975 109623276 + MGP_C3HHeJ_P0066574 Ttc39a protein_coding protein_coding MGP_C3HHeJ_T0066575.1 MGP_C3HHeJ_G0028266.1 mouse_genomes_project 4 109604994 109621980 + Ttc39a protein_coding processed_transcript MGP_C3HHeJ_T0066576.1 MGP_C3HHeJ_G0028266.1 mouse_genomes_project 4 109612660 109627240 + MGP_C3HHeJ_P0066576 Ttc39a protein_coding protein_coding MGP_C3HHeJ_T0066577.1 MGP_C3HHeJ_G0028266.1 mouse_genomes_project 4 109613532 109643259 + MGP_C3HHeJ_P0066577 Ttc39a protein_coding protein_coding MGP_C3HHeJ_T0066578.1 MGP_C3HHeJ_G0028266.1 mouse_genomes_project 4 109613658 109620415 + Ttc39a protein_coding processed_transcript MGP_C3HHeJ_T0066579.1 MGP_C3HHeJ_G0028266.1 mouse_genomes_project 4 109619979 109625403 + MGP_C3HHeJ_P0066579 Ttc39a protein_coding protein_coding MGP_C3HHeJ_T0068830.1 MGP_C3HHeJ_G0028810.1 mouse_genomes_project 4 149795694 149797004 + MGP_C3HHeJ_P0068830 Fv1 protein_coding protein_coding MGP_C3HHeJ_T0014625.1 MGP_C3HHeJ_G0012729.1 mouse_genomes_project 4 136727243 136727608 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064788.1 MGP_C3HHeJ_G0027864.1 mouse_genomes_project 4 39619575 39621766 - MGP_C3HHeJ_P0064788 Enho protein_coding protein_coding MGP_C3HHeJ_T0011460.1 MGP_C3HHeJ_G0009593.1 mouse_genomes_project 4 15688198 15688486 + Gm25971 misc_RNA misc_RNA MGP_C3HHeJ_T0069186.1 MGP_C3HHeJ_G0028880.1 mouse_genomes_project 4 154492402 154502297 + MGP_C3HHeJ_P0069186 Icmt protein_coding protein_coding MGP_C3HHeJ_T0069187.1 MGP_C3HHeJ_G0028880.1 mouse_genomes_project 4 154492479 154502296 + MGP_C3HHeJ_P0069187 Icmt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069188.1 MGP_C3HHeJ_G0028880.1 mouse_genomes_project 4 154492831 154495930 + Icmt protein_coding processed_transcript MGP_C3HHeJ_T0069189.1 MGP_C3HHeJ_G0028880.1 mouse_genomes_project 4 154500562 154502244 + Icmt protein_coding processed_transcript MGP_C3HHeJ_T0007769.1 MGP_C3HHeJ_G0006346.1 mouse_genomes_project 4 54142471 54180868 + Gm12511 lincRNA lincRNA MGP_C3HHeJ_T0014563.1 MGP_C3HHeJ_G0012667.1 mouse_genomes_project 4 118946251 118946459 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066113.1 MGP_C3HHeJ_G0028175.1 mouse_genomes_project 4 99586691 99589015 + MGP_C3HHeJ_P0066113 Foxd3 protein_coding protein_coding MGP_C3HHeJ_T0017834.1 MGP_C3HHeJ_G0015313.1 mouse_genomes_project 4 72912975 72920217 + Gm11240 processed_transcript processed_transcript MGP_C3HHeJ_T0066519.1 MGP_C3HHeJ_G0028260.1 mouse_genomes_project 4 109025026 109026655 + MGP_C3HHeJ_P0066519 Kti12 protein_coding protein_coding MGP_C3HHeJ_T0069215.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154592128 154652070 - MGP_C3HHeJ_P0069215 Kcnab2 protein_coding protein_coding MGP_C3HHeJ_T0069216.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154592130 154681179 - MGP_C3HHeJ_P0069216 Kcnab2 protein_coding protein_coding MGP_C3HHeJ_T0069217.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154592131 154680833 - MGP_C3HHeJ_P0069217 Kcnab2 protein_coding protein_coding MGP_C3HHeJ_T0069218.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154594107 154680741 - MGP_C3HHeJ_P0069218 Kcnab2 protein_coding protein_coding MGP_C3HHeJ_T0069219.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154594168 154652070 - MGP_C3HHeJ_P0069219 Kcnab2 protein_coding protein_coding MGP_C3HHeJ_T0069220.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154596374 154625235 - Kcnab2 protein_coding processed_transcript MGP_C3HHeJ_T0069221.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154603508 154633139 - Kcnab2 protein_coding processed_transcript MGP_C3HHeJ_T0069222.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154604428 154658243 - MGP_C3HHeJ_P0069222 Kcnab2 protein_coding protein_coding MGP_C3HHeJ_T0069223.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154605528 154651971 - Kcnab2 protein_coding processed_transcript MGP_C3HHeJ_T0069224.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154614333 154680852 - Kcnab2 protein_coding retained_intron MGP_C3HHeJ_T0069225.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154614487 154628336 - Kcnab2 protein_coding processed_transcript MGP_C3HHeJ_T0069226.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154615317 154620898 - Kcnab2 protein_coding processed_transcript MGP_C3HHeJ_T0069227.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154628905 154651971 - Kcnab2 protein_coding processed_transcript MGP_C3HHeJ_T0069228.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154637277 154680803 - MGP_C3HHeJ_P0069228 Kcnab2 protein_coding protein_coding MGP_C3HHeJ_T0066941.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117757700 117775514 - MGP_C3HHeJ_P0066941 Rnf220 protein_coding protein_coding MGP_C3HHeJ_T0066942.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117757708 117995028 - MGP_C3HHeJ_P0066942 Rnf220 protein_coding protein_coding MGP_C3HHeJ_T0066943.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117758172 117870161 - MGP_C3HHeJ_P0066943 Rnf220 protein_coding protein_coding MGP_C3HHeJ_T0066944.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117762768 117771723 - Rnf220 protein_coding processed_transcript MGP_C3HHeJ_T0066945.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117763676 117776088 - MGP_C3HHeJ_P0066945 Rnf220 protein_coding protein_coding MGP_C3HHeJ_T0066946.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117771340 117775700 - Rnf220 protein_coding processed_transcript MGP_C3HHeJ_T0066947.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117771627 117775369 - Rnf220 protein_coding processed_transcript MGP_C3HHeJ_T0066948.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117772137 117786704 - Rnf220 protein_coding processed_transcript MGP_C3HHeJ_T0066949.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117793509 117994925 - Rnf220 protein_coding processed_transcript MGP_C3HHeJ_T0066950.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117988230 117993007 - Rnf220 protein_coding processed_transcript MGP_C3HHeJ_T0014549.1 MGP_C3HHeJ_G0012653.1 mouse_genomes_project 4 116011550 116012642 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069374.1 MGP_C3HHeJ_G0028911.1 mouse_genomes_project 4 157463971 157498758 - Ski protein_coding processed_transcript MGP_C3HHeJ_T0069375.1 MGP_C3HHeJ_G0028911.1 mouse_genomes_project 4 157463971 157532711 - MGP_C3HHeJ_P0069375 Ski protein_coding protein_coding MGP_C3HHeJ_T0069376.1 MGP_C3HHeJ_G0028911.1 mouse_genomes_project 4 157463971 157532768 - MGP_C3HHeJ_P0069376 Ski protein_coding protein_coding MGP_C3HHeJ_T0100651.1 MGP_C3HHeJ_G0038845.1 mouse_genomes_project 4 93842480 93842609 + Gm23836 snoRNA snoRNA MGP_C3HHeJ_T0064321.1 MGP_C3HHeJ_G0027747.1 mouse_genomes_project 4 7921623 7939545 + MGP_C3HHeJ_P0064321 Trp53inp1 protein_coding protein_coding MGP_C3HHeJ_T0064322.1 MGP_C3HHeJ_G0027747.1 mouse_genomes_project 4 7921633 7939545 + Trp53inp1 protein_coding processed_transcript MGP_C3HHeJ_T0064323.1 MGP_C3HHeJ_G0027747.1 mouse_genomes_project 4 7921636 7931596 + Trp53inp1 protein_coding processed_transcript MGP_C3HHeJ_T0064324.1 MGP_C3HHeJ_G0027747.1 mouse_genomes_project 4 7929645 7933210 + Trp53inp1 protein_coding processed_transcript MGP_C3HHeJ_T0064697.1 MGP_C3HHeJ_G0027841.1 mouse_genomes_project 4 38179260 38188319 - MGP_C3HHeJ_P0064697 Ndufb6 protein_coding protein_coding MGP_C3HHeJ_T0064698.1 MGP_C3HHeJ_G0027841.1 mouse_genomes_project 4 38179334 38188307 - MGP_C3HHeJ_P0064698 Ndufb6 protein_coding protein_coding MGP_C3HHeJ_T0014305.1 MGP_C3HHeJ_G0012409.1 mouse_genomes_project 4 23748521 23749199 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007930.1 MGP_C3HHeJ_G0006466.1 mouse_genomes_project 4 141776437 141781707 + Gm13025 lincRNA lincRNA MGP_C3HHeJ_T0001373.1 MGP_C3HHeJ_G0001304.1 mouse_genomes_project 4 13289929 13290535 + TEC TEC MGP_C3HHeJ_T0068635.1 MGP_C3HHeJ_G0028736.1 mouse_genomes_project 4 142230796 142258847 - Szrd1 protein_coding processed_transcript MGP_C3HHeJ_T0068636.1 MGP_C3HHeJ_G0028736.1 mouse_genomes_project 4 142230796 142258847 - Szrd1 protein_coding processed_transcript MGP_C3HHeJ_T0068637.1 MGP_C3HHeJ_G0028736.1 mouse_genomes_project 4 142230796 142258838 - MGP_C3HHeJ_P0068637 Szrd1 protein_coding protein_coding MGP_C3HHeJ_T0068638.1 MGP_C3HHeJ_G0028736.1 mouse_genomes_project 4 142230796 142258799 - MGP_C3HHeJ_P0068638 Szrd1 protein_coding protein_coding MGP_C3HHeJ_T0068639.1 MGP_C3HHeJ_G0028736.1 mouse_genomes_project 4 142234362 142258812 - Szrd1 protein_coding processed_transcript MGP_C3HHeJ_T0014306.1 MGP_C3HHeJ_G0012410.1 mouse_genomes_project 4 24308960 24309208 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067082.1 MGP_C3HHeJ_G0028384.1 mouse_genomes_project 4 119479527 119486830 + MGP_C3HHeJ_P0067082 Lao1 protein_coding protein_coding MGP_C3HHeJ_T0067083.1 MGP_C3HHeJ_G0028384.1 mouse_genomes_project 4 119483313 119486001 + Lao1 protein_coding processed_transcript MGP_C3HHeJ_T0098478.1 MGP_C3HHeJ_G0036683.1 mouse_genomes_project 4 143216286 143221969 - Gm13053 sense_intronic sense_intronic MGP_C3HHeJ_T0065931.1 MGP_C3HHeJ_G0028124.1 mouse_genomes_project 4 88335467 88339658 - MGP_C3HHeJ_P0065931 Klhl9 protein_coding protein_coding MGP_C3HHeJ_T0014418.1 MGP_C3HHeJ_G0012522.1 mouse_genomes_project 4 66201473 66201842 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065184.1 MGP_C3HHeJ_G0027939.1 mouse_genomes_project 4 43301872 43353921 - MGP_C3HHeJ_P0065184 Fbxo10 protein_coding protein_coding MGP_C3HHeJ_T0065185.1 MGP_C3HHeJ_G0027939.1 mouse_genomes_project 4 43301873 43330137 - MGP_C3HHeJ_P0065185 Fbxo10 protein_coding protein_coding MGP_C3HHeJ_T0065186.1 MGP_C3HHeJ_G0027939.1 mouse_genomes_project 4 43314420 43326751 - Fbxo10 protein_coding processed_transcript MGP_C3HHeJ_T0065554.1 MGP_C3HHeJ_G0028039.1 mouse_genomes_project 4 58401291 58537730 + MGP_C3HHeJ_P0065554 E130308A19Rik protein_coding protein_coding MGP_C3HHeJ_T0065555.1 MGP_C3HHeJ_G0028039.1 mouse_genomes_project 4 58401323 58495881 + MGP_C3HHeJ_P0065555 E130308A19Rik protein_coding protein_coding MGP_C3HHeJ_T0065556.1 MGP_C3HHeJ_G0028039.1 mouse_genomes_project 4 58464749 58494723 + E130308A19Rik protein_coding processed_transcript MGP_C3HHeJ_T0098252.1 MGP_C3HHeJ_G0036464.1 mouse_genomes_project 4 50317632 50318065 + Gm24943 ribozyme ribozyme MGP_C3HHeJ_T0004542.1 MGP_C3HHeJ_G0003935.1 mouse_genomes_project 4 158065235 158067412 - 1500002C15Rik antisense antisense MGP_C3HHeJ_T0004543.1 MGP_C3HHeJ_G0003935.1 mouse_genomes_project 4 158065238 158067312 - 1500002C15Rik antisense antisense MGP_C3HHeJ_T0066472.1 MGP_C3HHeJ_G0028247.1 mouse_genomes_project 4 108363694 108430820 - MGP_C3HHeJ_P0066472 Zyg11b protein_coding protein_coding MGP_C3HHeJ_T0010531.1 MGP_C3HHeJ_G0008664.1 mouse_genomes_project 4 121354096 121354188 - Mir30e miRNA miRNA MGP_C3HHeJ_T0100620.1 MGP_C3HHeJ_G0038814.1 mouse_genomes_project 4 42651315 42651442 - Gm24376 snoRNA snoRNA MGP_C3HHeJ_T0067537.1 MGP_C3HHeJ_G0028495.1 mouse_genomes_project 4 127494552 127497925 - MGP_C3HHeJ_P0067537 Gjb5 protein_coding protein_coding MGP_C3HHeJ_T0064340.1 MGP_C3HHeJ_G0027750.1 mouse_genomes_project 4 8031975 8074690 - MGP_C3HHeJ_P0064340 Dpy19l4 protein_coding protein_coding MGP_C3HHeJ_T0064341.1 MGP_C3HHeJ_G0027750.1 mouse_genomes_project 4 8031975 8095797 - MGP_C3HHeJ_P0064341 Dpy19l4 protein_coding protein_coding MGP_C3HHeJ_T0064342.1 MGP_C3HHeJ_G0027750.1 mouse_genomes_project 4 8048912 8095797 - MGP_C3HHeJ_P0064342 Dpy19l4 protein_coding protein_coding MGP_C3HHeJ_T0064343.1 MGP_C3HHeJ_G0027750.1 mouse_genomes_project 4 8052130 8095735 - MGP_C3HHeJ_P0064343 Dpy19l4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064344.1 MGP_C3HHeJ_G0027750.1 mouse_genomes_project 4 8074703 8095707 - Dpy19l4 protein_coding processed_transcript MGP_C3HHeJ_T0064345.1 MGP_C3HHeJ_G0027750.1 mouse_genomes_project 4 8091029 8095760 - Dpy19l4 protein_coding processed_transcript MGP_C3HHeJ_T0014322.1 MGP_C3HHeJ_G0012426.1 mouse_genomes_project 4 28797010 28797485 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066075.1 MGP_C3HHeJ_G0028167.1 mouse_genomes_project 4 98579151 98587093 + MGP_C3HHeJ_P0066075 L1td1 protein_coding protein_coding MGP_C3HHeJ_T0066076.1 MGP_C3HHeJ_G0028167.1 mouse_genomes_project 4 98579165 98591890 + MGP_C3HHeJ_P0066076 L1td1 protein_coding protein_coding MGP_C3HHeJ_T0066077.1 MGP_C3HHeJ_G0028167.1 mouse_genomes_project 4 98579210 98587009 + MGP_C3HHeJ_P0066077 L1td1 protein_coding protein_coding MGP_C3HHeJ_T0066078.1 MGP_C3HHeJ_G0028167.1 mouse_genomes_project 4 98586651 98591526 + MGP_C3HHeJ_P0066078 L1td1 protein_coding protein_coding MGP_C3HHeJ_T0067830.1 MGP_C3HHeJ_G0028552.1 mouse_genomes_project 4 131290346 131300882 + MGP_C3HHeJ_P0067830 Matn1 protein_coding protein_coding MGP_C3HHeJ_T0068241.1 MGP_C3HHeJ_G0028641.1 mouse_genomes_project 4 136137729 136189513 - MGP_C3HHeJ_P0068241 Nipal3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068242.1 MGP_C3HHeJ_G0028641.1 mouse_genomes_project 4 136138446 136189513 - MGP_C3HHeJ_P0068242 Nipal3 protein_coding protein_coding MGP_C3HHeJ_T0068243.1 MGP_C3HHeJ_G0028641.1 mouse_genomes_project 4 136141189 136189630 - MGP_C3HHeJ_P0068243 Nipal3 protein_coding protein_coding MGP_C3HHeJ_T0068244.1 MGP_C3HHeJ_G0028641.1 mouse_genomes_project 4 136144183 136163227 - MGP_C3HHeJ_P0068244 Nipal3 protein_coding protein_coding MGP_C3HHeJ_T0068245.1 MGP_C3HHeJ_G0028641.1 mouse_genomes_project 4 136144474 136147353 - Nipal3 protein_coding processed_transcript MGP_C3HHeJ_T0068246.1 MGP_C3HHeJ_G0028641.1 mouse_genomes_project 4 136144564 136147625 - Nipal3 protein_coding processed_transcript MGP_C3HHeJ_T0068247.1 MGP_C3HHeJ_G0028641.1 mouse_genomes_project 4 136171414 136189975 - MGP_C3HHeJ_P0068247 Nipal3 protein_coding protein_coding MGP_C3HHeJ_T0068248.1 MGP_C3HHeJ_G0028641.1 mouse_genomes_project 4 136174326 136190044 - MGP_C3HHeJ_P0068248 Nipal3 protein_coding protein_coding MGP_C3HHeJ_T0010543.1 MGP_C3HHeJ_G0008676.1 mouse_genomes_project 4 132632954 132633044 - Gm22033 miRNA miRNA MGP_C3HHeJ_T0066591.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110422887 110514097 - MGP_C3HHeJ_P0066591 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066592.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110422902 110513459 - MGP_C3HHeJ_P0066592 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066593.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110422902 110514097 - MGP_C3HHeJ_P0066593 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066594.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110422902 110513459 - MGP_C3HHeJ_P0066594 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066595.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110422902 110576990 - MGP_C3HHeJ_P0066595 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066596.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110422902 110519207 - MGP_C3HHeJ_P0066596 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066597.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110422902 110516744 - MGP_C3HHeJ_P0066597 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066598.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110425523 110442247 - Elavl4 protein_coding processed_transcript MGP_C3HHeJ_T0066599.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110432365 110513186 - MGP_C3HHeJ_P0066599 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066600.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110444679 110500718 - Elavl4 protein_coding processed_transcript MGP_C3HHeJ_T0066601.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110445708 110514097 - MGP_C3HHeJ_P0066601 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066602.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110477267 110517366 - MGP_C3HHeJ_P0066602 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066666.1 MGP_C3HHeJ_G0028286.1 mouse_genomes_project 4 115168494 115171074 - MGP_C3HHeJ_P0066666 Foxd2 protein_coding protein_coding MGP_C3HHeJ_T0099376.1 MGP_C3HHeJ_G0037570.1 mouse_genomes_project 4 109181072 109181177 - Gm23589 snRNA snRNA MGP_C3HHeJ_T0102019.1 MGP_C3HHeJ_G0039984.1 mouse_genomes_project 4 122604545 122608995 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007797.1 MGP_C3HHeJ_G0006370.1 mouse_genomes_project 4 83290115 83294236 - Gm11415 lincRNA lincRNA MGP_C3HHeJ_T0007921.1 MGP_C3HHeJ_G0006458.1 mouse_genomes_project 4 140373884 140378476 - 2700016F22Rik lincRNA lincRNA MGP_C3HHeJ_T0014460.1 MGP_C3HHeJ_G0012564.1 mouse_genomes_project 4 82891680 82891943 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066343.1 MGP_C3HHeJ_G0028227.1 mouse_genomes_project 4 107196238 107207122 + MGP_C3HHeJ_P0066343 Cdcp2 protein_coding protein_coding MGP_C3HHeJ_T0066776.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116508396 116523956 + Pomgnt1 protein_coding processed_transcript MGP_C3HHeJ_T0066778.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116522342 116545561 + MGP_C3HHeJ_P0066778 Pomgnt1 protein_coding protein_coding MGP_C3HHeJ_T0066779.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116522357 116545562 + Pomgnt1 protein_coding retained_intron MGP_C3HHeJ_T0066781.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116522860 116545557 + MGP_C3HHeJ_P0066781 Pomgnt1 protein_coding protein_coding MGP_C3HHeJ_T0066782.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116536230 116545557 + MGP_C3HHeJ_P0066782 Pomgnt1 protein_coding protein_coding MGP_C3HHeJ_T0066783.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116536237 116545557 + MGP_C3HHeJ_P0066783 Pomgnt1 protein_coding protein_coding MGP_C3HHeJ_T0066784.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116537143 116545150 + MGP_C3HHeJ_P0066784 Pomgnt1 protein_coding protein_coding MGP_C3HHeJ_T0066785.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116540307 116541505 + Pomgnt1 protein_coding processed_transcript MGP_C3HHeJ_T0066786.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116541031 116544707 + Pomgnt1 protein_coding retained_intron MGP_C3HHeJ_T0066787.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116541649 116542366 + Pomgnt1 protein_coding retained_intron MGP_C3HHeJ_T0066788.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116541661 116544771 + Pomgnt1 protein_coding processed_transcript MGP_C3HHeJ_T0066789.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116543104 116544738 + Pomgnt1 protein_coding retained_intron MGP_C3HHeJ_T0067933.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133109512 133163950 + MGP_C3HHeJ_P0067933 Eya3 protein_coding protein_coding MGP_C3HHeJ_T0067934.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133109571 133195357 + MGP_C3HHeJ_P0067934 Eya3 protein_coding protein_coding MGP_C3HHeJ_T0067935.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133109581 133195354 + MGP_C3HHeJ_P0067935 Eya3 protein_coding protein_coding MGP_C3HHeJ_T0067936.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133109583 133171064 + Eya3 protein_coding processed_transcript MGP_C3HHeJ_T0067937.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133109589 133162162 + Eya3 protein_coding processed_transcript MGP_C3HHeJ_T0067938.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133109604 133191824 + Eya3 protein_coding processed_transcript MGP_C3HHeJ_T0067939.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133109604 133193024 + MGP_C3HHeJ_P0067939 Eya3 protein_coding protein_coding MGP_C3HHeJ_T0067940.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133109610 133193166 + Eya3 protein_coding processed_transcript MGP_C3HHeJ_T0067941.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133109642 133164135 + Eya3 protein_coding processed_transcript MGP_C3HHeJ_T0067942.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133127955 133193132 + Eya3 protein_coding processed_transcript MGP_C3HHeJ_T0067943.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133172995 133183649 + Eya3 protein_coding processed_transcript MGP_C3HHeJ_T0067944.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133176377 133191335 + Eya3 protein_coding processed_transcript MGP_C3HHeJ_T0007900.1 MGP_C3HHeJ_G0006446.1 mouse_genomes_project 4 132740530 132742877 + Snhg12 lincRNA lincRNA MGP_C3HHeJ_T0007901.1 MGP_C3HHeJ_G0006446.1 mouse_genomes_project 4 132740530 132741824 + Snhg12 lincRNA lincRNA MGP_C3HHeJ_T0007902.1 MGP_C3HHeJ_G0006446.1 mouse_genomes_project 4 132740530 132742875 + Snhg12 lincRNA lincRNA MGP_C3HHeJ_T0007903.1 MGP_C3HHeJ_G0006446.1 mouse_genomes_project 4 132740545 132742612 + Snhg12 lincRNA lincRNA MGP_C3HHeJ_T0007904.1 MGP_C3HHeJ_G0006446.1 mouse_genomes_project 4 132741481 132742877 + Snhg12 lincRNA lincRNA MGP_C3HHeJ_T0007905.1 MGP_C3HHeJ_G0006446.1 mouse_genomes_project 4 132741670 132742848 + Snhg12 lincRNA lincRNA MGP_C3HHeJ_T0007906.1 MGP_C3HHeJ_G0006446.1 mouse_genomes_project 4 132742039 132742877 + Snhg12 lincRNA lincRNA MGP_C3HHeJ_T0069001.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151701748 151751645 - MGP_C3HHeJ_P0069001 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069002.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151701748 151751635 - MGP_C3HHeJ_P0069002 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069003.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151701750 151726697 - MGP_C3HHeJ_P0069003 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069004.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151701750 151754527 - MGP_C3HHeJ_P0069004 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069005.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151701751 151728547 - MGP_C3HHeJ_P0069005 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069006.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151702397 151751542 - MGP_C3HHeJ_P0069006 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069007.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151703220 151715906 - MGP_C3HHeJ_P0069007 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069008.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151712393 151727689 - MGP_C3HHeJ_P0069008 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069009.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151712472 151728128 - MGP_C3HHeJ_P0069009 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069010.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151712634 151751541 - MGP_C3HHeJ_P0069010 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069011.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151712799 151751489 - MGP_C3HHeJ_P0069011 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069012.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151715774 151755508 - MGP_C3HHeJ_P0069012 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069013.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151725941 151728596 - Pik3cd protein_coding processed_transcript MGP_C3HHeJ_T0069014.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151726267 151754527 - Pik3cd protein_coding processed_transcript MGP_C3HHeJ_T0065246.1 MGP_C3HHeJ_G0027953.1 mouse_genomes_project 4 44451793 44491947 + MGP_C3HHeJ_P0065246 Ncbp1 protein_coding protein_coding MGP_C3HHeJ_T0065248.1 MGP_C3HHeJ_G0027953.1 mouse_genomes_project 4 44477450 44479644 + Ncbp1 protein_coding processed_transcript MGP_C3HHeJ_T0065249.1 MGP_C3HHeJ_G0027953.1 mouse_genomes_project 4 44484741 44491523 + Ncbp1 protein_coding processed_transcript MGP_C3HHeJ_T0011477.1 MGP_C3HHeJ_G0009610.1 mouse_genomes_project 4 89120424 89120573 + Gm27580 misc_RNA misc_RNA MGP_C3HHeJ_T0067322.1 MGP_C3HHeJ_G0028443.1 mouse_genomes_project 4 123888085 123907562 + MGP_C3HHeJ_P0067322 Rragc protein_coding protein_coding MGP_C3HHeJ_T0067323.1 MGP_C3HHeJ_G0028443.1 mouse_genomes_project 4 123888113 123907558 + MGP_C3HHeJ_P0067323 Rragc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067325.1 MGP_C3HHeJ_G0028443.1 mouse_genomes_project 4 123889744 123891649 + Rragc protein_coding processed_transcript MGP_C3HHeJ_T0067326.1 MGP_C3HHeJ_G0028443.1 mouse_genomes_project 4 123891564 123900633 + Rragc protein_coding retained_intron MGP_C3HHeJ_T0067327.1 MGP_C3HHeJ_G0028443.1 mouse_genomes_project 4 123891939 123906111 + Rragc protein_coding processed_transcript MGP_C3HHeJ_T0007708.1 MGP_C3HHeJ_G0006296.1 mouse_genomes_project 4 2195460 2201446 - Gm11782 lincRNA lincRNA MGP_C3HHeJ_T0067815.1 MGP_C3HHeJ_G0028550.1 mouse_genomes_project 4 131121862 131156764 + MGP_C3HHeJ_P0067815 Sdc3 protein_coding protein_coding MGP_C3HHeJ_T0067816.1 MGP_C3HHeJ_G0028550.1 mouse_genomes_project 4 131122029 131147718 + Sdc3 protein_coding retained_intron MGP_C3HHeJ_T0067817.1 MGP_C3HHeJ_G0028550.1 mouse_genomes_project 4 131141876 131149504 + MGP_C3HHeJ_P0067817 Sdc3 protein_coding protein_coding MGP_C3HHeJ_T0067818.1 MGP_C3HHeJ_G0028550.1 mouse_genomes_project 4 131144748 131149504 + MGP_C3HHeJ_P0067818 Sdc3 protein_coding protein_coding MGP_C3HHeJ_T0067819.1 MGP_C3HHeJ_G0028550.1 mouse_genomes_project 4 131147289 131152695 + Sdc3 protein_coding retained_intron MGP_C3HHeJ_T0010568.1 MGP_C3HHeJ_G0008701.1 mouse_genomes_project 4 152132526 152132628 + Mir34a miRNA miRNA MGP_C3HHeJ_T0014346.1 MGP_C3HHeJ_G0012450.1 mouse_genomes_project 4 36001599 36002143 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011474.1 MGP_C3HHeJ_G0009607.1 mouse_genomes_project 4 69489007 69489313 - Gm26320 misc_RNA misc_RNA MGP_C3HHeJ_T0001380.1 MGP_C3HHeJ_G0001311.1 mouse_genomes_project 4 99288890 99298483 - TEC TEC MGP_C3HHeJ_T0068614.1 MGP_C3HHeJ_G0028733.1 mouse_genomes_project 4 142131806 142144345 - Crocc protein_coding retained_intron MGP_C3HHeJ_T0068615.1 MGP_C3HHeJ_G0028733.1 mouse_genomes_project 4 142131806 142137294 - Crocc protein_coding retained_intron MGP_C3HHeJ_T0068616.1 MGP_C3HHeJ_G0028733.1 mouse_genomes_project 4 142132148 142133970 - Crocc protein_coding retained_intron MGP_C3HHeJ_T0068617.1 MGP_C3HHeJ_G0028733.1 mouse_genomes_project 4 142132215 142169890 - MGP_C3HHeJ_P0068617 Crocc protein_coding protein_coding MGP_C3HHeJ_T0068618.1 MGP_C3HHeJ_G0028733.1 mouse_genomes_project 4 142134894 142137686 - Crocc protein_coding retained_intron MGP_C3HHeJ_T0068619.1 MGP_C3HHeJ_G0028733.1 mouse_genomes_project 4 142136707 142137716 - Crocc protein_coding retained_intron MGP_C3HHeJ_T0068620.1 MGP_C3HHeJ_G0028733.1 mouse_genomes_project 4 142159729 142176690 - MGP_C3HHeJ_P0068620 Crocc protein_coding protein_coding MGP_C3HHeJ_T0068621.1 MGP_C3HHeJ_G0028733.1 mouse_genomes_project 4 142160959 142174258 - Crocc protein_coding retained_intron MGP_C3HHeJ_T0067239.1 MGP_C3HHeJ_G0028423.1 mouse_genomes_project 4 122571374 122586624 + MGP_C3HHeJ_P0067239 9530002B09Rik protein_coding protein_coding MGP_C3HHeJ_T0014440.1 MGP_C3HHeJ_G0012544.1 mouse_genomes_project 4 74464732 74465912 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004394.1 MGP_C3HHeJ_G0003825.1 mouse_genomes_project 4 82069452 82070359 + Gm11269 antisense antisense MGP_C3HHeJ_T0099405.1 MGP_C3HHeJ_G0037599.1 mouse_genomes_project 4 142034106 142034222 + Gm26226 snRNA snRNA MGP_C3HHeJ_T0011462.1 MGP_C3HHeJ_G0009595.1 mouse_genomes_project 4 16530447 16530737 - Gm25655 misc_RNA misc_RNA MGP_C3HHeJ_T0067850.1 MGP_C3HHeJ_G0028555.1 mouse_genomes_project 4 132267903 132295148 + MGP_C3HHeJ_P0067850 Srsf4 protein_coding protein_coding MGP_C3HHeJ_T0067851.1 MGP_C3HHeJ_G0028555.1 mouse_genomes_project 4 132268102 132286431 + MGP_C3HHeJ_P0067851 Srsf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067852.1 MGP_C3HHeJ_G0028555.1 mouse_genomes_project 4 132278581 132291276 + MGP_C3HHeJ_P0067852 Srsf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067853.1 MGP_C3HHeJ_G0028555.1 mouse_genomes_project 4 132279249 132295149 + MGP_C3HHeJ_P0067853 Srsf4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067854.1 MGP_C3HHeJ_G0028555.1 mouse_genomes_project 4 132279494 132295148 + Srsf4 protein_coding retained_intron MGP_C3HHeJ_T0014436.1 MGP_C3HHeJ_G0012540.1 mouse_genomes_project 4 73798898 73800116 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010535.1 MGP_C3HHeJ_G0008668.1 mouse_genomes_project 4 124734973 124735082 + Mir697 miRNA miRNA MGP_C3HHeJ_T0065915.1 MGP_C3HHeJ_G0028116.1 mouse_genomes_project 4 88012637 88057662 - MGP_C3HHeJ_P0065915 Hacd4 protein_coding protein_coding MGP_C3HHeJ_T0065918.1 MGP_C3HHeJ_G0028116.1 mouse_genomes_project 4 88027641 88057675 - MGP_C3HHeJ_P0065918 Hacd4 protein_coding protein_coding MGP_C3HHeJ_T0065919.1 MGP_C3HHeJ_G0028116.1 mouse_genomes_project 4 88030231 88057673 - MGP_C3HHeJ_P0065919 Hacd4 protein_coding protein_coding MGP_C3HHeJ_T0069484.1 MGP_C3HHeJ_G0028932.1 mouse_genomes_project 4 158148682 158161473 + MGP_C3HHeJ_P0069484 Ccnl2 protein_coding protein_coding MGP_C3HHeJ_T0069485.1 MGP_C3HHeJ_G0028932.1 mouse_genomes_project 4 158148694 158161473 + Ccnl2 protein_coding retained_intron MGP_C3HHeJ_T0069486.1 MGP_C3HHeJ_G0028932.1 mouse_genomes_project 4 158148712 158157992 + Ccnl2 protein_coding retained_intron MGP_C3HHeJ_T0069487.1 MGP_C3HHeJ_G0028932.1 mouse_genomes_project 4 158148971 158152040 + Ccnl2 protein_coding retained_intron MGP_C3HHeJ_T0069488.1 MGP_C3HHeJ_G0028932.1 mouse_genomes_project 4 158149678 158161233 + MGP_C3HHeJ_P0069488 Ccnl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069489.1 MGP_C3HHeJ_G0028932.1 mouse_genomes_project 4 158156463 158161283 + MGP_C3HHeJ_P0069489 Ccnl2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067230.1 MGP_C3HHeJ_G0028418.1 mouse_genomes_project 4 121652571 121692406 - MGP_C3HHeJ_P0067230 Zmpste24 protein_coding protein_coding MGP_C3HHeJ_T0067231.1 MGP_C3HHeJ_G0028418.1 mouse_genomes_project 4 121662036 121671868 - Zmpste24 protein_coding processed_transcript MGP_C3HHeJ_T0067232.1 MGP_C3HHeJ_G0028418.1 mouse_genomes_project 4 121677072 121689863 - MGP_C3HHeJ_P0067232 Zmpste24 protein_coding protein_coding MGP_C3HHeJ_T0101988.1 MGP_C3HHeJ_G0039953.1 mouse_genomes_project 4 60915446 60917765 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098250.1 MGP_C3HHeJ_G0036462.1 mouse_genomes_project 4 18310220 18310576 + Gm22817 ribozyme ribozyme MGP_C3HHeJ_T0065936.1 MGP_C3HHeJ_G0028129.1 mouse_genomes_project 4 88468244 88468907 + MGP_C3HHeJ_P0065936 Ifna5 protein_coding protein_coding MGP_C3HHeJ_T0007856.1 MGP_C3HHeJ_G0006418.1 mouse_genomes_project 4 124293260 124301885 - 1700021L23Rik lincRNA lincRNA MGP_C3HHeJ_T0014492.1 MGP_C3HHeJ_G0012596.1 mouse_genomes_project 4 95316418 95316747 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007788.1 MGP_C3HHeJ_G0006363.1 mouse_genomes_project 4 70185683 70241248 - Gm11228 lincRNA lincRNA MGP_C3HHeJ_T0069015.1 MGP_C3HHeJ_G0028847.1 mouse_genomes_project 4 151768205 151790862 - MGP_C3HHeJ_P0069015 Tmem201 protein_coding protein_coding MGP_C3HHeJ_T0069016.1 MGP_C3HHeJ_G0028847.1 mouse_genomes_project 4 151768213 151790862 - MGP_C3HHeJ_P0069016 Tmem201 protein_coding protein_coding MGP_C3HHeJ_T0069017.1 MGP_C3HHeJ_G0028847.1 mouse_genomes_project 4 151777700 151783514 - Tmem201 protein_coding retained_intron MGP_C3HHeJ_T0069018.1 MGP_C3HHeJ_G0028847.1 mouse_genomes_project 4 151777700 151790862 - MGP_C3HHeJ_P0069018 Tmem201 protein_coding protein_coding MGP_C3HHeJ_T0069019.1 MGP_C3HHeJ_G0028847.1 mouse_genomes_project 4 151781626 151790816 - Tmem201 protein_coding retained_intron MGP_C3HHeJ_T0069020.1 MGP_C3HHeJ_G0028847.1 mouse_genomes_project 4 151783990 151790588 - Tmem201 protein_coding processed_transcript MGP_C3HHeJ_T0068006.1 MGP_C3HHeJ_G0028588.1 mouse_genomes_project 4 133797203 133846214 - MGP_C3HHeJ_P0068006 Wdtc1 protein_coding protein_coding MGP_C3HHeJ_T0068007.1 MGP_C3HHeJ_G0028588.1 mouse_genomes_project 4 133813272 133859780 - Wdtc1 protein_coding processed_transcript MGP_C3HHeJ_T0068008.1 MGP_C3HHeJ_G0028588.1 mouse_genomes_project 4 133817545 133827239 - Wdtc1 protein_coding processed_transcript MGP_C3HHeJ_T0068009.1 MGP_C3HHeJ_G0028588.1 mouse_genomes_project 4 133818170 133860349 - Wdtc1 protein_coding processed_transcript MGP_C3HHeJ_T0014464.1 MGP_C3HHeJ_G0012568.1 mouse_genomes_project 4 84366717 84367644 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014228.1 MGP_C3HHeJ_G0012332.1 mouse_genomes_project 4 2502123 2503095 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064895.1 MGP_C3HHeJ_G0027894.1 mouse_genomes_project 4 41144969 41168057 - MGP_C3HHeJ_P0064895 Vcp protein_coding protein_coding MGP_C3HHeJ_T0064896.1 MGP_C3HHeJ_G0027894.1 mouse_genomes_project 4 41146374 41167728 - MGP_C3HHeJ_P0064896 Vcp protein_coding unknown_likely_coding MGP_C3HHeJ_T0064897.1 MGP_C3HHeJ_G0027894.1 mouse_genomes_project 4 41150251 41151707 - Vcp protein_coding processed_transcript MGP_C3HHeJ_T0064898.1 MGP_C3HHeJ_G0027894.1 mouse_genomes_project 4 41152050 41155140 - Vcp protein_coding processed_transcript MGP_C3HHeJ_T0064899.1 MGP_C3HHeJ_G0027894.1 mouse_genomes_project 4 41158361 41159385 - Vcp protein_coding processed_transcript MGP_C3HHeJ_T0064900.1 MGP_C3HHeJ_G0027894.1 mouse_genomes_project 4 41159338 41167983 - Vcp protein_coding processed_transcript MGP_C3HHeJ_T0010539.1 MGP_C3HHeJ_G0008672.1 mouse_genomes_project 4 129808476 129808605 - Mir8119 miRNA miRNA MGP_C3HHeJ_T0064570.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30099134 30221442 + MGP_C3HHeJ_P0064570 Mdn1 protein_coding protein_coding MGP_C3HHeJ_T0064571.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30099134 30221452 + MGP_C3HHeJ_P0064571 Mdn1 protein_coding protein_coding MGP_C3HHeJ_T0064572.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30099198 30106355 + Mdn1 protein_coding processed_transcript MGP_C3HHeJ_T0064573.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30113877 30122041 + Mdn1 protein_coding processed_transcript MGP_C3HHeJ_T0064574.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30138141 30139273 + Mdn1 protein_coding processed_transcript MGP_C3HHeJ_T0064575.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30148826 30221433 + Mdn1 protein_coding processed_transcript MGP_C3HHeJ_T0064576.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30167205 30175781 + Mdn1 protein_coding processed_transcript MGP_C3HHeJ_T0064577.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30170200 30172556 + Mdn1 protein_coding processed_transcript MGP_C3HHeJ_T0064578.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30195015 30198437 + Mdn1 protein_coding processed_transcript MGP_C3HHeJ_T0064579.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30195015 30196162 + Mdn1 protein_coding processed_transcript MGP_C3HHeJ_T0064580.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30207416 30210630 + Mdn1 protein_coding processed_transcript MGP_C3HHeJ_T0100597.1 MGP_C3HHeJ_G0038791.1 mouse_genomes_project 4 450652 450789 - Gm22781 snoRNA snoRNA MGP_C3HHeJ_T0014465.1 MGP_C3HHeJ_G0012569.1 mouse_genomes_project 4 84635576 84635979 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068600.1 MGP_C3HHeJ_G0028730.1 mouse_genomes_project 4 142074959 142093680 + MGP_C3HHeJ_P0068600 Sdhb protein_coding protein_coding MGP_C3HHeJ_T0068601.1 MGP_C3HHeJ_G0028730.1 mouse_genomes_project 4 142075157 142091283 + Sdhb protein_coding processed_transcript MGP_C3HHeJ_T0068602.1 MGP_C3HHeJ_G0028730.1 mouse_genomes_project 4 142075159 142088784 + Sdhb protein_coding processed_transcript MGP_C3HHeJ_T0067962.1 MGP_C3HHeJ_G0028579.1 mouse_genomes_project 4 133382745 133405216 - MGP_C3HHeJ_P0067962 Fam76a protein_coding protein_coding MGP_C3HHeJ_T0067963.1 MGP_C3HHeJ_G0028579.1 mouse_genomes_project 4 133395588 133403695 - MGP_C3HHeJ_P0067963 Fam76a protein_coding protein_coding MGP_C3HHeJ_T0100657.1 MGP_C3HHeJ_G0038851.1 mouse_genomes_project 4 109748198 109748329 + Gm22497 snoRNA snoRNA MGP_C3HHeJ_T0014277.1 MGP_C3HHeJ_G0012381.1 mouse_genomes_project 4 15955764 15956702 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099329.1 MGP_C3HHeJ_G0037523.1 mouse_genomes_project 4 14526291 14526394 - Gm23384 snRNA snRNA MGP_C3HHeJ_T0101209.1 MGP_C3HHeJ_G0039344.1 mouse_genomes_project 4 58613539 58614082 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101210.1 MGP_C3HHeJ_G0039345.1 mouse_genomes_project 4 86383990 86402499 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0064230.1 MGP_C3HHeJ_G0027730.1 mouse_genomes_project 4 803768 808739 - MGP_C3HHeJ_P0064230 Penk protein_coding protein_coding MGP_C3HHeJ_T0064231.1 MGP_C3HHeJ_G0027730.1 mouse_genomes_project 4 803769 809081 - MGP_C3HHeJ_P0064231 Penk protein_coding protein_coding MGP_C3HHeJ_T0068171.1 MGP_C3HHeJ_G0028626.1 mouse_genomes_project 4 135122398 135136419 + MGP_C3HHeJ_P0068171 Aunip protein_coding protein_coding MGP_C3HHeJ_T0014252.1 MGP_C3HHeJ_G0012356.1 mouse_genomes_project 4 10451203 10451939 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014445.1 MGP_C3HHeJ_G0012549.1 mouse_genomes_project 4 75866064 75868521 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014525.1 MGP_C3HHeJ_G0012629.1 mouse_genomes_project 4 106849527 106849741 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065140.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42761986 42954293 - MGP_C3HHeJ_P0065140 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065141.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768374 42954224 - MGP_C3HHeJ_P0065141 Pax5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065142.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768374 42954224 - MGP_C3HHeJ_P0065142 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065143.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768374 42954224 - MGP_C3HHeJ_P0065143 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065144.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768374 42954224 - MGP_C3HHeJ_P0065144 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065145.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768374 42954224 - MGP_C3HHeJ_P0065145 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065146.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768726 42954214 - MGP_C3HHeJ_P0065146 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065147.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768726 42954214 - MGP_C3HHeJ_P0065147 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065148.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768726 42954214 - MGP_C3HHeJ_P0065148 Pax5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065149.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768726 42954214 - MGP_C3HHeJ_P0065149 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065150.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768726 42954214 - MGP_C3HHeJ_P0065150 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065151.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768726 42954214 - MGP_C3HHeJ_P0065151 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065152.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768726 42954214 - MGP_C3HHeJ_P0065152 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065153.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768733 42889360 - MGP_C3HHeJ_P0065153 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065154.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42812468 42927645 - Pax5 protein_coding processed_transcript MGP_C3HHeJ_T0065155.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42923269 42947812 - MGP_C3HHeJ_P0065155 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065156.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42923283 42947219 - Pax5 protein_coding processed_transcript MGP_C3HHeJ_T0065157.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42923283 42947219 - Pax5 protein_coding processed_transcript MGP_C3HHeJ_T0065158.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42923283 42947219 - Pax5 protein_coding processed_transcript MGP_C3HHeJ_T0065159.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42923283 42947219 - MGP_C3HHeJ_P0065159 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0067244.1 MGP_C3HHeJ_G0028425.1 mouse_genomes_project 4 122739692 122769447 - MGP_C3HHeJ_P0067244 Cap1 protein_coding protein_coding MGP_C3HHeJ_T0067245.1 MGP_C3HHeJ_G0028425.1 mouse_genomes_project 4 122739692 122769580 - MGP_C3HHeJ_P0067245 Cap1 protein_coding protein_coding MGP_C3HHeJ_T0067246.1 MGP_C3HHeJ_G0028425.1 mouse_genomes_project 4 122739692 122769592 - MGP_C3HHeJ_P0067246 Cap1 protein_coding protein_coding MGP_C3HHeJ_T0067247.1 MGP_C3HHeJ_G0028425.1 mouse_genomes_project 4 122744202 122746417 - Cap1 protein_coding processed_transcript MGP_C3HHeJ_T0067248.1 MGP_C3HHeJ_G0028425.1 mouse_genomes_project 4 122749116 122769501 - MGP_C3HHeJ_P0067248 Cap1 protein_coding protein_coding MGP_C3HHeJ_T0067249.1 MGP_C3HHeJ_G0028425.1 mouse_genomes_project 4 122752464 122769396 - Cap1 protein_coding processed_transcript MGP_C3HHeJ_T0067250.1 MGP_C3HHeJ_G0028425.1 mouse_genomes_project 4 122753555 122769400 - Cap1 protein_coding processed_transcript MGP_C3HHeJ_T0066904.1 MGP_C3HHeJ_G0028339.1 mouse_genomes_project 4 117573678 117577687 - Btbd19 protein_coding processed_transcript MGP_C3HHeJ_T0066905.1 MGP_C3HHeJ_G0028339.1 mouse_genomes_project 4 117575226 117577742 - Btbd19 protein_coding processed_transcript MGP_C3HHeJ_T0066906.1 MGP_C3HHeJ_G0028339.1 mouse_genomes_project 4 117575524 117581469 - MGP_C3HHeJ_P0066906 Btbd19 protein_coding protein_coding MGP_C3HHeJ_T0066907.1 MGP_C3HHeJ_G0028339.1 mouse_genomes_project 4 117576000 117577716 - Btbd19 protein_coding processed_transcript MGP_C3HHeJ_T0066908.1 MGP_C3HHeJ_G0028339.1 mouse_genomes_project 4 117576055 117576615 - Btbd19 protein_coding retained_intron MGP_C3HHeJ_T0066909.1 MGP_C3HHeJ_G0028339.1 mouse_genomes_project 4 117576078 117577232 - Btbd19 protein_coding retained_intron MGP_C3HHeJ_T0066910.1 MGP_C3HHeJ_G0028339.1 mouse_genomes_project 4 117576662 117581576 - MGP_C3HHeJ_P0066910 Btbd19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066911.1 MGP_C3HHeJ_G0028339.1 mouse_genomes_project 4 117576789 117581509 - MGP_C3HHeJ_P0066911 Btbd19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066912.1 MGP_C3HHeJ_G0028339.1 mouse_genomes_project 4 117579832 117581022 - Btbd19 protein_coding processed_transcript MGP_C3HHeJ_T0017821.1 MGP_C3HHeJ_G0015304.1 mouse_genomes_project 4 39498048 39503175 + Gm12404 processed_transcript processed_transcript MGP_C3HHeJ_T0067572.1 MGP_C3HHeJ_G0028504.1 mouse_genomes_project 4 129080754 129100930 + MGP_C3HHeJ_P0067572 Trim62 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067573.1 MGP_C3HHeJ_G0028504.1 mouse_genomes_project 4 129080762 129108617 + MGP_C3HHeJ_P0067573 Trim62 protein_coding protein_coding MGP_C3HHeJ_T0014517.1 MGP_C3HHeJ_G0012621.1 mouse_genomes_project 4 103954972 103955955 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065327.1 MGP_C3HHeJ_G0027974.1 mouse_genomes_project 4 46828411 46869490 - MGP_C3HHeJ_P0065327 Tex10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065328.1 MGP_C3HHeJ_G0027974.1 mouse_genomes_project 4 46828411 46874025 - MGP_C3HHeJ_P0065328 Tex10 protein_coding protein_coding MGP_C3HHeJ_T0065329.1 MGP_C3HHeJ_G0027974.1 mouse_genomes_project 4 46828509 46873988 - MGP_C3HHeJ_P0065329 Tex10 protein_coding protein_coding MGP_C3HHeJ_T0065330.1 MGP_C3HHeJ_G0027974.1 mouse_genomes_project 4 46858768 46859903 - Tex10 protein_coding retained_intron MGP_C3HHeJ_T0065331.1 MGP_C3HHeJ_G0027974.1 mouse_genomes_project 4 46868272 46870562 - Tex10 protein_coding processed_transcript MGP_C3HHeJ_T0065332.1 MGP_C3HHeJ_G0027974.1 mouse_genomes_project 4 46869774 46873909 - Tex10 protein_coding retained_intron MGP_C3HHeJ_T0067538.1 MGP_C3HHeJ_G0028496.1 mouse_genomes_project 4 128087272 128130586 - MGP_C3HHeJ_P0067538 CK137956 protein_coding protein_coding MGP_C3HHeJ_T0065664.1 MGP_C3HHeJ_G0028067.1 mouse_genomes_project 4 62542001 62557305 - MGP_C3HHeJ_P0065664 1700018C11Rik protein_coding protein_coding MGP_C3HHeJ_T0065665.1 MGP_C3HHeJ_G0028067.1 mouse_genomes_project 4 62542001 62557317 - MGP_C3HHeJ_P0065665 1700018C11Rik protein_coding protein_coding MGP_C3HHeJ_T0066989.1 MGP_C3HHeJ_G0028354.1 mouse_genomes_project 4 118383460 118386371 - MGP_C3HHeJ_P0066989 Atp6v0b protein_coding protein_coding MGP_C3HHeJ_T0066990.1 MGP_C3HHeJ_G0028354.1 mouse_genomes_project 4 118383466 118385031 - Atp6v0b protein_coding retained_intron MGP_C3HHeJ_T0066991.1 MGP_C3HHeJ_G0028354.1 mouse_genomes_project 4 118383581 118384937 - Atp6v0b protein_coding retained_intron MGP_C3HHeJ_T0066992.1 MGP_C3HHeJ_G0028354.1 mouse_genomes_project 4 118384300 118385773 - Atp6v0b protein_coding retained_intron MGP_C3HHeJ_T0066993.1 MGP_C3HHeJ_G0028354.1 mouse_genomes_project 4 118384367 118385695 - MGP_C3HHeJ_P0066993 Atp6v0b protein_coding protein_coding MGP_C3HHeJ_T0066994.1 MGP_C3HHeJ_G0028354.1 mouse_genomes_project 4 118384771 118386422 - MGP_C3HHeJ_P0066994 Atp6v0b protein_coding protein_coding MGP_C3HHeJ_T0066995.1 MGP_C3HHeJ_G0028354.1 mouse_genomes_project 4 118385417 118386468 - MGP_C3HHeJ_P0066995 Atp6v0b protein_coding protein_coding MGP_C3HHeJ_T0014505.1 MGP_C3HHeJ_G0012609.1 mouse_genomes_project 4 100280724 100281475 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007720.1 MGP_C3HHeJ_G0006303.1 mouse_genomes_project 4 8818532 8828102 - Gm11840 lincRNA lincRNA MGP_C3HHeJ_T0011486.1 MGP_C3HHeJ_G0009619.1 mouse_genomes_project 4 117358796 117359063 + Gm25435 misc_RNA misc_RNA MGP_C3HHeJ_T0067021.1 MGP_C3HHeJ_G0028360.1 mouse_genomes_project 4 118707797 118791448 - MGP_C3HHeJ_P0067021 Ptprf protein_coding protein_coding MGP_C3HHeJ_T0067022.1 MGP_C3HHeJ_G0028360.1 mouse_genomes_project 4 118707804 118791278 - MGP_C3HHeJ_P0067022 Ptprf protein_coding unknown_likely_coding MGP_C3HHeJ_T0067023.1 MGP_C3HHeJ_G0028360.1 mouse_genomes_project 4 118708572 118717263 - Ptprf protein_coding processed_transcript MGP_C3HHeJ_T0067024.1 MGP_C3HHeJ_G0028360.1 mouse_genomes_project 4 118708588 118736014 - MGP_C3HHeJ_P0067024 Ptprf protein_coding protein_coding MGP_C3HHeJ_T0067025.1 MGP_C3HHeJ_G0028360.1 mouse_genomes_project 4 118708593 118735585 - MGP_C3HHeJ_P0067025 Ptprf protein_coding protein_coding MGP_C3HHeJ_T0067026.1 MGP_C3HHeJ_G0028360.1 mouse_genomes_project 4 118709443 118710325 - Ptprf protein_coding processed_transcript MGP_C3HHeJ_T0067027.1 MGP_C3HHeJ_G0028360.1 mouse_genomes_project 4 118725713 118730682 - Ptprf protein_coding processed_transcript MGP_C3HHeJ_T0065933.1 MGP_C3HHeJ_G0028126.1 mouse_genomes_project 4 88437550 88438547 + MGP_C3HHeJ_P0065933 Ifna7 protein_coding protein_coding MGP_C3HHeJ_T0065870.1 MGP_C3HHeJ_G0028109.1 mouse_genomes_project 4 86158908 86191259 - Plin2 protein_coding processed_transcript MGP_C3HHeJ_T0065871.1 MGP_C3HHeJ_G0028109.1 mouse_genomes_project 4 86159021 86202933 - MGP_C3HHeJ_P0065871 Plin2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0065872.1 MGP_C3HHeJ_G0028109.1 mouse_genomes_project 4 86189035 86202976 - MGP_C3HHeJ_P0065872 Plin2 protein_coding protein_coding MGP_C3HHeJ_T0065873.1 MGP_C3HHeJ_G0028109.1 mouse_genomes_project 4 86189482 86191220 - Plin2 protein_coding processed_transcript MGP_C3HHeJ_T0065874.1 MGP_C3HHeJ_G0028109.1 mouse_genomes_project 4 86189731 86191724 - Plin2 protein_coding processed_transcript MGP_C3HHeJ_T0065875.1 MGP_C3HHeJ_G0028109.1 mouse_genomes_project 4 86192697 86198541 - MGP_C3HHeJ_P0065875 Plin2 protein_coding protein_coding MGP_C3HHeJ_T0065876.1 MGP_C3HHeJ_G0028109.1 mouse_genomes_project 4 86194509 86202476 - MGP_C3HHeJ_P0065876 Plin2 protein_coding protein_coding MGP_C3HHeJ_T0065877.1 MGP_C3HHeJ_G0028109.1 mouse_genomes_project 4 86194509 86202684 - MGP_C3HHeJ_P0065877 Plin2 protein_coding protein_coding MGP_C3HHeJ_T0065878.1 MGP_C3HHeJ_G0028109.1 mouse_genomes_project 4 86200580 86202902 - Plin2 protein_coding processed_transcript MGP_C3HHeJ_T0068991.1 MGP_C3HHeJ_G0028843.1 mouse_genomes_project 4 151516941 151519970 + MGP_C3HHeJ_P0068991 Lzic protein_coding protein_coding MGP_C3HHeJ_T0068992.1 MGP_C3HHeJ_G0028843.1 mouse_genomes_project 4 151516943 151519998 + MGP_C3HHeJ_P0068992 Lzic protein_coding protein_coding MGP_C3HHeJ_T0068993.1 MGP_C3HHeJ_G0028843.1 mouse_genomes_project 4 151516952 151517454 + Lzic protein_coding processed_transcript MGP_C3HHeJ_T0068994.1 MGP_C3HHeJ_G0028843.1 mouse_genomes_project 4 151517006 151530390 + MGP_C3HHeJ_P0068994 Lzic protein_coding protein_coding MGP_C3HHeJ_T0068995.1 MGP_C3HHeJ_G0028843.1 mouse_genomes_project 4 151517045 151517716 + Lzic protein_coding processed_transcript MGP_C3HHeJ_T0065406.1 MGP_C3HHeJ_G0028001.1 mouse_genomes_project 4 52194762 52262967 + MGP_C3HHeJ_P0065406 Fsd1l protein_coding protein_coding MGP_C3HHeJ_T0065407.1 MGP_C3HHeJ_G0028001.1 mouse_genomes_project 4 52194781 52215097 + Fsd1l protein_coding retained_intron MGP_C3HHeJ_T0065408.1 MGP_C3HHeJ_G0028001.1 mouse_genomes_project 4 52194782 52211203 + Fsd1l protein_coding retained_intron MGP_C3HHeJ_T0065409.1 MGP_C3HHeJ_G0028001.1 mouse_genomes_project 4 52194860 52257119 + MGP_C3HHeJ_P0065409 Fsd1l protein_coding protein_coding MGP_C3HHeJ_T0065410.1 MGP_C3HHeJ_G0028001.1 mouse_genomes_project 4 52194865 52257117 + MGP_C3HHeJ_P0065410 Fsd1l protein_coding protein_coding MGP_C3HHeJ_T0065411.1 MGP_C3HHeJ_G0028001.1 mouse_genomes_project 4 52195007 52222994 + MGP_C3HHeJ_P0065411 Fsd1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065412.1 MGP_C3HHeJ_G0028001.1 mouse_genomes_project 4 52206583 52262967 + MGP_C3HHeJ_P0065412 Fsd1l protein_coding protein_coding MGP_C3HHeJ_T0004422.1 MGP_C3HHeJ_G0003843.1 mouse_genomes_project 4 107461702 107464015 - Gm12869 antisense antisense MGP_C3HHeJ_T0066641.1 MGP_C3HHeJ_G0028277.1 mouse_genomes_project 4 112126692 112138409 + Skint8 protein_coding processed_transcript MGP_C3HHeJ_T0066642.1 MGP_C3HHeJ_G0028277.1 mouse_genomes_project 4 112126698 112142888 + MGP_C3HHeJ_P0066642 Skint8 protein_coding protein_coding MGP_C3HHeJ_T0066643.1 MGP_C3HHeJ_G0028277.1 mouse_genomes_project 4 112126793 112141109 + Skint8 protein_coding retained_intron MGP_C3HHeJ_T0066644.1 MGP_C3HHeJ_G0028277.1 mouse_genomes_project 4 112126857 112153443 + MGP_C3HHeJ_P0066644 Skint8 protein_coding protein_coding MGP_C3HHeJ_T0066645.1 MGP_C3HHeJ_G0028277.1 mouse_genomes_project 4 112134800 112138557 + Skint8 protein_coding processed_transcript MGP_C3HHeJ_T0014349.1 MGP_C3HHeJ_G0012453.1 mouse_genomes_project 4 37680170 37680965 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097908.1 MGP_C3HHeJ_G0036120.1 mouse_genomes_project 4 158026041 158028181 + pseudogene pseudogene MGP_C3HHeJ_T0099408.1 MGP_C3HHeJ_G0037602.1 mouse_genomes_project 4 150508507 150508611 + Gm24002 snRNA snRNA MGP_C3HHeJ_T0067552.1 MGP_C3HHeJ_G0028500.1 mouse_genomes_project 4 128792850 128796027 - MGP_C3HHeJ_P0067552 Tlr12 protein_coding protein_coding MGP_C3HHeJ_T0067553.1 MGP_C3HHeJ_G0028500.1 mouse_genomes_project 4 128794909 128796000 - Tlr12 protein_coding processed_transcript MGP_C3HHeJ_T0064542.1 MGP_C3HHeJ_G0027806.1 mouse_genomes_project 4 26078030 26236319 + MGP_C3HHeJ_P0064542 Epha7 protein_coding protein_coding MGP_C3HHeJ_T0064543.1 MGP_C3HHeJ_G0027806.1 mouse_genomes_project 4 26078030 26214933 + MGP_C3HHeJ_P0064543 Epha7 protein_coding protein_coding MGP_C3HHeJ_T0064544.1 MGP_C3HHeJ_G0027806.1 mouse_genomes_project 4 26078051 26235635 + MGP_C3HHeJ_P0064544 Epha7 protein_coding protein_coding MGP_C3HHeJ_T0064545.1 MGP_C3HHeJ_G0027806.1 mouse_genomes_project 4 26078149 26236319 + MGP_C3HHeJ_P0064545 Epha7 protein_coding protein_coding MGP_C3HHeJ_T0064546.1 MGP_C3HHeJ_G0027806.1 mouse_genomes_project 4 26078225 26138898 + Epha7 protein_coding processed_transcript MGP_C3HHeJ_T0064547.1 MGP_C3HHeJ_G0027806.1 mouse_genomes_project 4 26080690 26086457 + Epha7 protein_coding processed_transcript MGP_C3HHeJ_T0064548.1 MGP_C3HHeJ_G0027806.1 mouse_genomes_project 4 26136937 26211386 + Epha7 protein_coding processed_transcript MGP_C3HHeJ_T0064549.1 MGP_C3HHeJ_G0027806.1 mouse_genomes_project 4 26137020 26214220 + Epha7 protein_coding processed_transcript MGP_C3HHeJ_T0068781.1 MGP_C3HHeJ_G0028785.1 mouse_genomes_project 4 145806173 145809398 + MGP_C3HHeJ_P0068781 protein_coding protein_coding MGP_C3HHeJ_T0065384.1 MGP_C3HHeJ_G0027993.1 mouse_genomes_project 4 51366288 51367248 + MGP_C3HHeJ_P0065384 Olfr275 protein_coding protein_coding MGP_C3HHeJ_T0014601.1 MGP_C3HHeJ_G0012705.1 mouse_genomes_project 4 127548862 127549282 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014450.1 MGP_C3HHeJ_G0012554.1 mouse_genomes_project 4 77501724 77502666 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014454.1 MGP_C3HHeJ_G0012558.1 mouse_genomes_project 4 79327794 79330539 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007806.1 MGP_C3HHeJ_G0006377.1 mouse_genomes_project 4 89869884 89874395 + Gm12629 lincRNA lincRNA MGP_C3HHeJ_T0066255.1 MGP_C3HHeJ_G0028206.1 mouse_genomes_project 4 104804138 104842525 + MGP_C3HHeJ_P0066255 C8b protein_coding protein_coding MGP_C3HHeJ_T0066256.1 MGP_C3HHeJ_G0028206.1 mouse_genomes_project 4 104804211 104842536 + MGP_C3HHeJ_P0066256 C8b protein_coding protein_coding MGP_C3HHeJ_T0066257.1 MGP_C3HHeJ_G0028206.1 mouse_genomes_project 4 104837572 104842905 + C8b protein_coding processed_transcript MGP_C3HHeJ_T0004459.1 MGP_C3HHeJ_G0003870.1 mouse_genomes_project 4 124901263 124905156 - 1700125G02Rik antisense antisense MGP_C3HHeJ_T0065217.1 MGP_C3HHeJ_G0027947.1 mouse_genomes_project 4 44109334 44127928 - MGP_C3HHeJ_P0065217 Igfbpl1 protein_coding protein_coding MGP_C3HHeJ_T0065218.1 MGP_C3HHeJ_G0027947.1 mouse_genomes_project 4 44112870 44116222 - Igfbpl1 protein_coding processed_transcript MGP_C3HHeJ_T0067271.1 MGP_C3HHeJ_G0028433.1 mouse_genomes_project 4 123092145 123103602 + MGP_C3HHeJ_P0067271 Hpcal4 protein_coding protein_coding MGP_C3HHeJ_T0067272.1 MGP_C3HHeJ_G0028433.1 mouse_genomes_project 4 123092157 123100414 + MGP_C3HHeJ_P0067272 Hpcal4 protein_coding protein_coding MGP_C3HHeJ_T0067273.1 MGP_C3HHeJ_G0028433.1 mouse_genomes_project 4 123092417 123097699 + MGP_C3HHeJ_P0067273 Hpcal4 protein_coding protein_coding MGP_C3HHeJ_T0067274.1 MGP_C3HHeJ_G0028433.1 mouse_genomes_project 4 123092434 123093072 + Hpcal4 protein_coding processed_transcript MGP_C3HHeJ_T0067275.1 MGP_C3HHeJ_G0028433.1 mouse_genomes_project 4 123092647 123099645 + MGP_C3HHeJ_P0067275 Hpcal4 protein_coding protein_coding MGP_C3HHeJ_T0007819.1 MGP_C3HHeJ_G0006389.1 mouse_genomes_project 4 99957509 99971421 + Gm12702 lincRNA lincRNA MGP_C3HHeJ_T0004524.1 MGP_C3HHeJ_G0003920.1 mouse_genomes_project 4 151604156 151606327 - Gm13066 antisense antisense MGP_C3HHeJ_T0099327.1 MGP_C3HHeJ_G0037521.1 mouse_genomes_project 4 12264556 12264663 + Gm24317 snRNA snRNA MGP_C3HHeJ_T0014315.1 MGP_C3HHeJ_G0012419.1 mouse_genomes_project 4 25857855 25858119 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017856.1 MGP_C3HHeJ_G0015329.1 mouse_genomes_project 4 115171457 115183921 + Foxd2os processed_transcript processed_transcript MGP_C3HHeJ_T0017857.1 MGP_C3HHeJ_G0015329.1 mouse_genomes_project 4 115171457 115184564 + Foxd2os processed_transcript processed_transcript MGP_C3HHeJ_T0017809.1 MGP_C3HHeJ_G0015297.1 mouse_genomes_project 4 15393998 15879237 + processed_transcript processed_transcript MGP_C3HHeJ_T0065696.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71235052 71318626 - MGP_C3HHeJ_P0065696 Tle1 protein_coding protein_coding MGP_C3HHeJ_T0065697.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71235715 71318564 - MGP_C3HHeJ_P0065697 Tle1 protein_coding protein_coding MGP_C3HHeJ_T0065698.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71235717 71318561 - MGP_C3HHeJ_P0065698 Tle1 protein_coding protein_coding MGP_C3HHeJ_T0065699.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71235720 71316799 - Tle1 protein_coding retained_intron MGP_C3HHeJ_T0065700.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71236115 71317859 - MGP_C3HHeJ_P0065700 Tle1 protein_coding protein_coding MGP_C3HHeJ_T0065701.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71236130 71238647 - Tle1 protein_coding processed_transcript MGP_C3HHeJ_T0065702.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71256408 71259134 - MGP_C3HHeJ_P0065702 Tle1 protein_coding protein_coding MGP_C3HHeJ_T0065703.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71275380 71318569 - MGP_C3HHeJ_P0065703 Tle1 protein_coding protein_coding MGP_C3HHeJ_T0065704.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71276072 71317199 - MGP_C3HHeJ_P0065704 Tle1 protein_coding protein_coding MGP_C3HHeJ_T0065705.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71284982 71318600 - Tle1 protein_coding processed_transcript MGP_C3HHeJ_T0066862.1 MGP_C3HHeJ_G0028331.1 mouse_genomes_project 4 117219424 117233257 - MGP_C3HHeJ_P0066862 Toe1 protein_coding protein_coding MGP_C3HHeJ_T0066863.1 MGP_C3HHeJ_G0028331.1 mouse_genomes_project 4 117229709 117233349 - MGP_C3HHeJ_P0066863 Toe1 protein_coding protein_coding MGP_C3HHeJ_T0066864.1 MGP_C3HHeJ_G0028331.1 mouse_genomes_project 4 117229719 117230901 - Toe1 protein_coding processed_transcript MGP_C3HHeJ_T0066865.1 MGP_C3HHeJ_G0028331.1 mouse_genomes_project 4 117230382 117231314 - Toe1 protein_coding retained_intron MGP_C3HHeJ_T0066866.1 MGP_C3HHeJ_G0028331.1 mouse_genomes_project 4 117230490 117232232 - MGP_C3HHeJ_P0066866 Toe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066867.1 MGP_C3HHeJ_G0028331.1 mouse_genomes_project 4 117230984 117232309 - Toe1 protein_coding retained_intron MGP_C3HHeJ_T0066868.1 MGP_C3HHeJ_G0028331.1 mouse_genomes_project 4 117231419 117233315 - Toe1 protein_coding processed_transcript MGP_C3HHeJ_T0066869.1 MGP_C3HHeJ_G0028331.1 mouse_genomes_project 4 117231525 117233257 - Toe1 protein_coding retained_intron MGP_C3HHeJ_T0069548.1 MGP_C3HHeJ_G0028943.1 mouse_genomes_project 4 158340893 158344047 - MGP_C3HHeJ_P0069548 B3galt6 protein_coding protein_coding MGP_C3HHeJ_T0007945.1 MGP_C3HHeJ_G0006481.1 mouse_genomes_project 4 154916178 154919154 + Gm833 lincRNA lincRNA MGP_C3HHeJ_T0067234.1 MGP_C3HHeJ_G0028420.1 mouse_genomes_project 4 121736394 121776918 - MGP_C3HHeJ_P0067234 Rlf protein_coding protein_coding MGP_C3HHeJ_T0067235.1 MGP_C3HHeJ_G0028420.1 mouse_genomes_project 4 121736905 121808763 - MGP_C3HHeJ_P0067235 Rlf protein_coding protein_coding MGP_C3HHeJ_T0067236.1 MGP_C3HHeJ_G0028420.1 mouse_genomes_project 4 121762692 121776918 - MGP_C3HHeJ_P0067236 Rlf protein_coding protein_coding MGP_C3HHeJ_T0069065.1 MGP_C3HHeJ_G0028857.1 mouse_genomes_project 4 152736599 152763275 - MGP_C3HHeJ_P0069065 Slc45a1 protein_coding protein_coding MGP_C3HHeJ_T0069066.1 MGP_C3HHeJ_G0028857.1 mouse_genomes_project 4 152738065 152763198 - MGP_C3HHeJ_P0069066 Slc45a1 protein_coding protein_coding MGP_C3HHeJ_T0069067.1 MGP_C3HHeJ_G0028857.1 mouse_genomes_project 4 152754316 152755117 - Slc45a1 protein_coding retained_intron MGP_C3HHeJ_T0014478.1 MGP_C3HHeJ_G0012582.1 mouse_genomes_project 4 90259383 90260007 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010488.1 MGP_C3HHeJ_G0008621.1 mouse_genomes_project 4 8767478 8767542 + Gm25002 miRNA miRNA MGP_C3HHeJ_T0066817.1 MGP_C3HHeJ_G0028323.1 mouse_genomes_project 4 116956162 117004039 + MGP_C3HHeJ_P0066817 Gpbp1l1 protein_coding protein_coding MGP_C3HHeJ_T0066818.1 MGP_C3HHeJ_G0028323.1 mouse_genomes_project 4 116986956 116989873 + Gpbp1l1 protein_coding processed_transcript MGP_C3HHeJ_T0066819.1 MGP_C3HHeJ_G0028323.1 mouse_genomes_project 4 116989783 116998161 + Gpbp1l1 protein_coding processed_transcript MGP_C3HHeJ_T0010514.1 MGP_C3HHeJ_G0008647.1 mouse_genomes_project 4 80322531 80322627 + Gm27452 miRNA miRNA MGP_C3HHeJ_T0100669.1 MGP_C3HHeJ_G0038863.1 mouse_genomes_project 4 126975214 126975347 - Gm25604 snoRNA snoRNA MGP_C3HHeJ_T0067657.1 MGP_C3HHeJ_G0028522.1 mouse_genomes_project 4 129762760 129765164 + MGP_C3HHeJ_P0067657 Marcksl1 protein_coding protein_coding MGP_C3HHeJ_T0066269.1 MGP_C3HHeJ_G0028213.1 mouse_genomes_project 4 106377943 106500336 + MGP_C3HHeJ_P0066269 Usp24 protein_coding protein_coding MGP_C3HHeJ_T0066270.1 MGP_C3HHeJ_G0028213.1 mouse_genomes_project 4 106377950 106422585 + Usp24 protein_coding retained_intron MGP_C3HHeJ_T0066271.1 MGP_C3HHeJ_G0028213.1 mouse_genomes_project 4 106377964 106500341 + MGP_C3HHeJ_P0066271 Usp24 protein_coding protein_coding MGP_C3HHeJ_T0066272.1 MGP_C3HHeJ_G0028213.1 mouse_genomes_project 4 106487522 106489874 + Usp24 protein_coding processed_transcript MGP_C3HHeJ_T0066794.1 MGP_C3HHeJ_G0028319.1 mouse_genomes_project 4 116615376 116657024 + MGP_C3HHeJ_P0066794 Pik3r3 protein_coding protein_coding MGP_C3HHeJ_T0066795.1 MGP_C3HHeJ_G0028319.1 mouse_genomes_project 4 116615419 116696591 + MGP_C3HHeJ_P0066795 Pik3r3 protein_coding protein_coding MGP_C3HHeJ_T0066796.1 MGP_C3HHeJ_G0028319.1 mouse_genomes_project 4 116615454 116693376 + MGP_C3HHeJ_P0066796 Pik3r3 protein_coding protein_coding MGP_C3HHeJ_T0007752.1 MGP_C3HHeJ_G0006334.1 mouse_genomes_project 4 43977869 44019444 + Gm829 lincRNA lincRNA MGP_C3HHeJ_T0007753.1 MGP_C3HHeJ_G0006334.1 mouse_genomes_project 4 43977869 43987920 + Gm829 lincRNA lincRNA MGP_C3HHeJ_T0014651.1 MGP_C3HHeJ_G0012755.1 mouse_genomes_project 4 151108533 151108853 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068757.1 MGP_C3HHeJ_G0028768.1 mouse_genomes_project 4 144700386 144714356 - MGP_C3HHeJ_P0068757 Oog4 protein_coding protein_coding MGP_C3HHeJ_T0068758.1 MGP_C3HHeJ_G0028768.1 mouse_genomes_project 4 144700387 144714336 - MGP_C3HHeJ_P0068758 Oog4 protein_coding protein_coding MGP_C3HHeJ_T0004513.1 MGP_C3HHeJ_G0003912.1 mouse_genomes_project 4 150555872 150557155 - Gm13209 antisense antisense MGP_C3HHeJ_T0069474.1 MGP_C3HHeJ_G0028928.1 mouse_genomes_project 4 158102223 158110101 - MGP_C3HHeJ_P0069474 Vwa1 protein_coding protein_coding MGP_C3HHeJ_T0101985.1 MGP_C3HHeJ_G0039950.1 mouse_genomes_project 4 47763516 47781258 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100632.1 MGP_C3HHeJ_G0038826.1 mouse_genomes_project 4 55522700 55522833 - Gm25053 snoRNA snoRNA MGP_C3HHeJ_T0064871.1 MGP_C3HHeJ_G0027889.1 mouse_genomes_project 4 40881225 40881891 - MGP_C3HHeJ_P0064871 protein_coding protein_coding MGP_C3HHeJ_T0067063.1 MGP_C3HHeJ_G0028369.1 mouse_genomes_project 4 119063209 119131628 - MGP_C3HHeJ_P0067063 Cfap57 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069515.1 MGP_C3HHeJ_G0028938.1 mouse_genomes_project 4 158209281 158228429 + Cpsf3l protein_coding processed_transcript MGP_C3HHeJ_T0069516.1 MGP_C3HHeJ_G0028938.1 mouse_genomes_project 4 158209281 158229043 + MGP_C3HHeJ_P0069516 Cpsf3l protein_coding protein_coding MGP_C3HHeJ_T0069517.1 MGP_C3HHeJ_G0028938.1 mouse_genomes_project 4 158209281 158228415 + MGP_C3HHeJ_P0069517 Cpsf3l protein_coding protein_coding MGP_C3HHeJ_T0069518.1 MGP_C3HHeJ_G0028938.1 mouse_genomes_project 4 158209302 158212057 + Cpsf3l protein_coding retained_intron MGP_C3HHeJ_T0069519.1 MGP_C3HHeJ_G0028938.1 mouse_genomes_project 4 158209350 158226655 + MGP_C3HHeJ_P0069519 Cpsf3l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069520.1 MGP_C3HHeJ_G0028938.1 mouse_genomes_project 4 158227514 158228217 + Cpsf3l protein_coding retained_intron MGP_C3HHeJ_T0069522.1 MGP_C3HHeJ_G0028938.1 mouse_genomes_project 4 158227852 158228463 + Cpsf3l protein_coding retained_intron MGP_C3HHeJ_T0004434.1 MGP_C3HHeJ_G0003849.1 mouse_genomes_project 4 115075805 115164458 - 9130410C08Rik antisense antisense MGP_C3HHeJ_T0001375.1 MGP_C3HHeJ_G0001306.1 mouse_genomes_project 4 39684391 39684869 - TEC TEC MGP_C3HHeJ_T0067104.1 MGP_C3HHeJ_G0028389.1 mouse_genomes_project 4 119732930 119762399 - AU022252 protein_coding processed_transcript MGP_C3HHeJ_T0067106.1 MGP_C3HHeJ_G0028389.1 mouse_genomes_project 4 119749530 119762403 - MGP_C3HHeJ_P0067106 AU022252 protein_coding protein_coding MGP_C3HHeJ_T0067107.1 MGP_C3HHeJ_G0028389.1 mouse_genomes_project 4 119755934 119762369 - AU022252 protein_coding processed_transcript MGP_C3HHeJ_T0067108.1 MGP_C3HHeJ_G0028389.1 mouse_genomes_project 4 119756024 119762376 - AU022252 protein_coding processed_transcript MGP_C3HHeJ_T0101993.1 MGP_C3HHeJ_G0039958.1 mouse_genomes_project 4 88233903 88235295 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0066700.1 MGP_C3HHeJ_G0028300.1 mouse_genomes_project 4 115908507 115968702 + MGP_C3HHeJ_P0066700 protein_coding protein_coding MGP_C3HHeJ_T0066702.1 MGP_C3HHeJ_G0028300.1 mouse_genomes_project 4 115908531 115968699 + MGP_C3HHeJ_P0066702 protein_coding protein_coding MGP_C3HHeJ_T0014230.1 MGP_C3HHeJ_G0012334.1 mouse_genomes_project 4 2916881 2917756 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068118.1 MGP_C3HHeJ_G0028612.1 mouse_genomes_project 4 134793107 134812070 - MGP_C3HHeJ_P0068118 Catsper4 protein_coding protein_coding MGP_C3HHeJ_T0068119.1 MGP_C3HHeJ_G0028612.1 mouse_genomes_project 4 134793107 134812070 - MGP_C3HHeJ_P0068119 Catsper4 protein_coding protein_coding MGP_C3HHeJ_T0068120.1 MGP_C3HHeJ_G0028612.1 mouse_genomes_project 4 134809178 134812059 - MGP_C3HHeJ_P0068120 Catsper4 protein_coding protein_coding MGP_C3HHeJ_T0068121.1 MGP_C3HHeJ_G0028612.1 mouse_genomes_project 4 134811184 134812037 - Catsper4 protein_coding processed_transcript MGP_C3HHeJ_T0068181.1 MGP_C3HHeJ_G0028629.1 mouse_genomes_project 4 135173825 135320166 - MGP_C3HHeJ_P0068181 Man1c1 protein_coding protein_coding MGP_C3HHeJ_T0068182.1 MGP_C3HHeJ_G0028629.1 mouse_genomes_project 4 135173825 135320166 - MGP_C3HHeJ_P0068182 Man1c1 protein_coding protein_coding MGP_C3HHeJ_T0068183.1 MGP_C3HHeJ_G0028629.1 mouse_genomes_project 4 135180017 135319643 - Man1c1 protein_coding retained_intron MGP_C3HHeJ_T0066132.1 MGP_C3HHeJ_G0028179.1 mouse_genomes_project 4 99840305 99900134 + MGP_C3HHeJ_P0066132 Pgm2 protein_coding protein_coding MGP_C3HHeJ_T0066133.1 MGP_C3HHeJ_G0028179.1 mouse_genomes_project 4 99867871 99900134 + MGP_C3HHeJ_P0066133 Pgm2 protein_coding protein_coding MGP_C3HHeJ_T0011487.1 MGP_C3HHeJ_G0009620.1 mouse_genomes_project 4 121727733 121728052 + Gm22982 misc_RNA misc_RNA MGP_C3HHeJ_T0011485.1 MGP_C3HHeJ_G0009618.1 mouse_genomes_project 4 117145149 117145240 + Gm27688 misc_RNA misc_RNA MGP_C3HHeJ_T0067840.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132236156 132261209 + MGP_C3HHeJ_P0067840 Mecr protein_coding protein_coding MGP_C3HHeJ_T0067841.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132236179 132254281 + MGP_C3HHeJ_P0067841 Mecr protein_coding protein_coding MGP_C3HHeJ_T0067842.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132236191 132236694 + Mecr protein_coding processed_transcript MGP_C3HHeJ_T0067843.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132247103 132254416 + Mecr protein_coding processed_transcript MGP_C3HHeJ_T0067844.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132247162 132251589 + Mecr protein_coding processed_transcript MGP_C3HHeJ_T0067845.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132251154 132258755 + Mecr protein_coding processed_transcript MGP_C3HHeJ_T0067846.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132251180 132261209 + Mecr protein_coding processed_transcript MGP_C3HHeJ_T0067847.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132253650 132258497 + Mecr protein_coding processed_transcript MGP_C3HHeJ_T0067848.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132255127 132261024 + Mecr protein_coding processed_transcript MGP_C3HHeJ_T0067849.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132258200 132261199 + Mecr protein_coding processed_transcript MGP_C3HHeJ_T0014639.1 MGP_C3HHeJ_G0012743.1 mouse_genomes_project 4 144648975 144649663 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099372.1 MGP_C3HHeJ_G0037566.1 mouse_genomes_project 4 108168391 108168495 - Gm23354 snRNA snRNA MGP_C3HHeJ_T0004444.1 MGP_C3HHeJ_G0003858.1 mouse_genomes_project 4 118475752 118494675 + 9530034E10Rik antisense antisense MGP_C3HHeJ_T0014626.1 MGP_C3HHeJ_G0012730.1 mouse_genomes_project 4 136813498 136813958 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066694.1 MGP_C3HHeJ_G0028296.1 mouse_genomes_project 4 115744551 115753426 + MGP_C3HHeJ_P0066694 Cyp4a30b protein_coding protein_coding MGP_C3HHeJ_T0068472.1 MGP_C3HHeJ_G0028695.1 mouse_genomes_project 4 139380945 139389232 + MGP_C3HHeJ_P0068472 Camk2n1 protein_coding protein_coding MGP_C3HHeJ_T0065745.1 MGP_C3HHeJ_G0028089.1 mouse_genomes_project 4 79330546 79331047 - MGP_C3HHeJ_P0065745 protein_coding protein_coding MGP_C3HHeJ_T0004519.1 MGP_C3HHeJ_G0003916.1 mouse_genomes_project 4 151366182 151367451 + Ube4bos3 antisense antisense MGP_C3HHeJ_T0064414.1 MGP_C3HHeJ_G0027768.1 mouse_genomes_project 4 11743049 11799102 + MGP_C3HHeJ_P0064414 Tmem55a protein_coding protein_coding MGP_C3HHeJ_T0099386.1 MGP_C3HHeJ_G0037580.1 mouse_genomes_project 4 121678115 121678279 - Gm23540 snRNA snRNA MGP_C3HHeJ_T0100662.1 MGP_C3HHeJ_G0038856.1 mouse_genomes_project 4 118667705 118667809 + Gm23382 snoRNA snoRNA MGP_C3HHeJ_T0065073.1 MGP_C3HHeJ_G0027917.1 mouse_genomes_project 4 41848095 41850317 - Hint2 protein_coding processed_transcript MGP_C3HHeJ_T0065074.1 MGP_C3HHeJ_G0027917.1 mouse_genomes_project 4 41848095 41850312 - Hint2 protein_coding processed_transcript MGP_C3HHeJ_T0065075.1 MGP_C3HHeJ_G0027917.1 mouse_genomes_project 4 41848096 41848825 - Hint2 protein_coding processed_transcript MGP_C3HHeJ_T0065076.1 MGP_C3HHeJ_G0027917.1 mouse_genomes_project 4 41848097 41848596 - Hint2 protein_coding processed_transcript MGP_C3HHeJ_T0065077.1 MGP_C3HHeJ_G0027917.1 mouse_genomes_project 4 41848097 41850335 - MGP_C3HHeJ_P0065077 Hint2 protein_coding protein_coding MGP_C3HHeJ_T0065078.1 MGP_C3HHeJ_G0027917.1 mouse_genomes_project 4 41848098 41850317 - Hint2 protein_coding processed_transcript MGP_C3HHeJ_T0065079.1 MGP_C3HHeJ_G0027917.1 mouse_genomes_project 4 41848542 41849612 - Hint2 protein_coding processed_transcript MGP_C3HHeJ_T0066302.1 MGP_C3HHeJ_G0028222.1 mouse_genomes_project 4 106805337 106821727 + MGP_C3HHeJ_P0066302 Fam151a protein_coding protein_coding MGP_C3HHeJ_T0100677.1 MGP_C3HHeJ_G0038871.1 mouse_genomes_project 4 132741793 132741922 + Snora44 snoRNA snoRNA MGP_C3HHeJ_T0011461.1 MGP_C3HHeJ_G0009594.1 mouse_genomes_project 4 15704545 15704876 - Gm24419 misc_RNA misc_RNA MGP_C3HHeJ_T0064885.1 MGP_C3HHeJ_G0027892.1 mouse_genomes_project 4 41113731 41114562 + Dnajb5 protein_coding processed_transcript MGP_C3HHeJ_T0064886.1 MGP_C3HHeJ_G0027892.1 mouse_genomes_project 4 41114168 41122591 + Dnajb5 protein_coding retained_intron MGP_C3HHeJ_T0064887.1 MGP_C3HHeJ_G0027892.1 mouse_genomes_project 4 41114257 41117120 + Dnajb5 protein_coding processed_transcript MGP_C3HHeJ_T0064888.1 MGP_C3HHeJ_G0027892.1 mouse_genomes_project 4 41114579 41122597 + MGP_C3HHeJ_P0064888 Dnajb5 protein_coding protein_coding MGP_C3HHeJ_T0064889.1 MGP_C3HHeJ_G0027892.1 mouse_genomes_project 4 41116911 41122582 + MGP_C3HHeJ_P0064889 Dnajb5 protein_coding protein_coding MGP_C3HHeJ_T0017814.1 MGP_C3HHeJ_G0015300.1 mouse_genomes_project 4 30483854 30488032 - 4933421O10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0011470.1 MGP_C3HHeJ_G0009603.1 mouse_genomes_project 4 50057433 50057702 + Gm22563 misc_RNA misc_RNA MGP_C3HHeJ_T0099402.1 MGP_C3HHeJ_G0037596.1 mouse_genomes_project 4 138140392 138140481 + Gm25772 snRNA snRNA MGP_C3HHeJ_T0014371.1 MGP_C3HHeJ_G0012475.1 mouse_genomes_project 4 45823551 45824873 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064383.1 MGP_C3HHeJ_G0027761.1 mouse_genomes_project 4 9002622 9011696 + protein_coding processed_transcript MGP_C3HHeJ_T0064384.1 MGP_C3HHeJ_G0027761.1 mouse_genomes_project 4 9002625 9014228 + MGP_C3HHeJ_P0064384 protein_coding protein_coding MGP_C3HHeJ_T0064385.1 MGP_C3HHeJ_G0027761.1 mouse_genomes_project 4 9002643 9012036 + protein_coding processed_transcript MGP_C3HHeJ_T0064386.1 MGP_C3HHeJ_G0027761.1 mouse_genomes_project 4 9002675 9014228 + MGP_C3HHeJ_P0064386 protein_coding protein_coding MGP_C3HHeJ_T0068838.1 MGP_C3HHeJ_G0028812.1 mouse_genomes_project 4 149836830 149863683 - MGP_C3HHeJ_P0068838 Plod1 protein_coding protein_coding MGP_C3HHeJ_T0068839.1 MGP_C3HHeJ_G0028812.1 mouse_genomes_project 4 149842660 149847952 - MGP_C3HHeJ_P0068839 Plod1 protein_coding protein_coding MGP_C3HHeJ_T0068840.1 MGP_C3HHeJ_G0028812.1 mouse_genomes_project 4 149849308 149863658 - Plod1 protein_coding retained_intron MGP_C3HHeJ_T0068841.1 MGP_C3HHeJ_G0028812.1 mouse_genomes_project 4 149849695 149850588 - Plod1 protein_coding retained_intron MGP_C3HHeJ_T0068842.1 MGP_C3HHeJ_G0028812.1 mouse_genomes_project 4 149854534 149863641 - MGP_C3HHeJ_P0068842 Plod1 protein_coding protein_coding MGP_C3HHeJ_T0068843.1 MGP_C3HHeJ_G0028812.1 mouse_genomes_project 4 149858578 149863624 - Plod1 protein_coding processed_transcript MGP_C3HHeJ_T0064863.1 MGP_C3HHeJ_G0027883.1 mouse_genomes_project 4 40344386 40345520 + MGP_C3HHeJ_P0064863 protein_coding protein_coding MGP_C3HHeJ_T0069478.1 MGP_C3HHeJ_G0028931.1 mouse_genomes_project 4 158138924 158139695 + Mrpl20 protein_coding processed_transcript MGP_C3HHeJ_T0069479.1 MGP_C3HHeJ_G0028931.1 mouse_genomes_project 4 158139573 158145119 + MGP_C3HHeJ_P0069479 Mrpl20 protein_coding protein_coding MGP_C3HHeJ_T0069480.1 MGP_C3HHeJ_G0028931.1 mouse_genomes_project 4 158139699 158145086 + MGP_C3HHeJ_P0069480 Mrpl20 protein_coding protein_coding MGP_C3HHeJ_T0069481.1 MGP_C3HHeJ_G0028931.1 mouse_genomes_project 4 158139702 158146263 + MGP_C3HHeJ_P0069481 Mrpl20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069482.1 MGP_C3HHeJ_G0028931.1 mouse_genomes_project 4 158139704 158143446 + MGP_C3HHeJ_P0069482 Mrpl20 protein_coding protein_coding MGP_C3HHeJ_T0069483.1 MGP_C3HHeJ_G0028931.1 mouse_genomes_project 4 158139811 158145082 + Mrpl20 protein_coding processed_transcript MGP_C3HHeJ_T0068642.1 MGP_C3HHeJ_G0028738.1 mouse_genomes_project 4 142333649 142339831 + MGP_C3HHeJ_P0068642 Rsg1 protein_coding protein_coding MGP_C3HHeJ_T0068643.1 MGP_C3HHeJ_G0028738.1 mouse_genomes_project 4 142334138 142338357 + Rsg1 protein_coding processed_transcript MGP_C3HHeJ_T0068644.1 MGP_C3HHeJ_G0028738.1 mouse_genomes_project 4 142338328 142346518 + Rsg1 protein_coding processed_transcript MGP_C3HHeJ_T0067379.1 MGP_C3HHeJ_G0028460.1 mouse_genomes_project 4 125107397 125135969 + MGP_C3HHeJ_P0067379 Meaf6 protein_coding protein_coding MGP_C3HHeJ_T0067380.1 MGP_C3HHeJ_G0028460.1 mouse_genomes_project 4 125107414 125132634 + MGP_C3HHeJ_P0067380 Meaf6 protein_coding protein_coding MGP_C3HHeJ_T0067381.1 MGP_C3HHeJ_G0028460.1 mouse_genomes_project 4 125107427 125132459 + MGP_C3HHeJ_P0067381 Meaf6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067382.1 MGP_C3HHeJ_G0028460.1 mouse_genomes_project 4 125107428 125112424 + Meaf6 protein_coding processed_transcript MGP_C3HHeJ_T0067383.1 MGP_C3HHeJ_G0028460.1 mouse_genomes_project 4 125107524 125132197 + MGP_C3HHeJ_P0067383 Meaf6 protein_coding protein_coding MGP_C3HHeJ_T0067384.1 MGP_C3HHeJ_G0028460.1 mouse_genomes_project 4 125108451 125132202 + MGP_C3HHeJ_P0067384 Meaf6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067385.1 MGP_C3HHeJ_G0028460.1 mouse_genomes_project 4 125112161 125126348 + Meaf6 protein_coding processed_transcript MGP_C3HHeJ_T0067386.1 MGP_C3HHeJ_G0028460.1 mouse_genomes_project 4 125130728 125132173 + Meaf6 protein_coding retained_intron MGP_C3HHeJ_T0004540.1 MGP_C3HHeJ_G0003933.1 mouse_genomes_project 4 157339693 157343071 + Gm10564 antisense antisense MGP_C3HHeJ_T0014330.1 MGP_C3HHeJ_G0012434.1 mouse_genomes_project 4 30510728 30511175 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004538.1 MGP_C3HHeJ_G0003932.1 mouse_genomes_project 4 157162057 157167389 - Gm13112 antisense antisense MGP_C3HHeJ_T0004539.1 MGP_C3HHeJ_G0003932.1 mouse_genomes_project 4 157162634 157169912 - Gm13112 antisense antisense MGP_C3HHeJ_T0067171.1 MGP_C3HHeJ_G0028401.1 mouse_genomes_project 4 120189643 120191422 + MGP_C3HHeJ_P0067171 Guca2a protein_coding protein_coding MGP_C3HHeJ_T0014240.1 MGP_C3HHeJ_G0012344.1 mouse_genomes_project 4 7184532 7185478 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065475.1 MGP_C3HHeJ_G0028019.1 mouse_genomes_project 4 56232611 56569841 + MGP_C3HHeJ_P0065475 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065477.1 MGP_C3HHeJ_G0028019.1 mouse_genomes_project 4 56232762 56531521 + MGP_C3HHeJ_P0065477 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065478.1 MGP_C3HHeJ_G0028019.1 mouse_genomes_project 4 56303557 56567577 + MGP_C3HHeJ_P0065478 protein_coding protein_coding MGP_C3HHeJ_T0065484.1 MGP_C3HHeJ_G0028019.1 mouse_genomes_project 4 56522203 56569843 + MGP_C3HHeJ_P0065484 protein_coding protein_coding MGP_C3HHeJ_T0066682.1 MGP_C3HHeJ_G0028291.1 mouse_genomes_project 4 115362738 115367923 + MGP_C3HHeJ_P0066682 Pdzk1ip1 protein_coding protein_coding MGP_C3HHeJ_T0066683.1 MGP_C3HHeJ_G0028291.1 mouse_genomes_project 4 115362738 115367923 + MGP_C3HHeJ_P0066683 Pdzk1ip1 protein_coding protein_coding MGP_C3HHeJ_T0066684.1 MGP_C3HHeJ_G0028291.1 mouse_genomes_project 4 115362753 115367928 + MGP_C3HHeJ_P0066684 Pdzk1ip1 protein_coding protein_coding MGP_C3HHeJ_T0066685.1 MGP_C3HHeJ_G0028291.1 mouse_genomes_project 4 115362753 115367928 + MGP_C3HHeJ_P0066685 Pdzk1ip1 protein_coding protein_coding MGP_C3HHeJ_T0066686.1 MGP_C3HHeJ_G0028291.1 mouse_genomes_project 4 115363073 115365371 + Pdzk1ip1 protein_coding processed_transcript MGP_C3HHeJ_T0066687.1 MGP_C3HHeJ_G0028291.1 mouse_genomes_project 4 115364211 115367893 + Pdzk1ip1 protein_coding processed_transcript MGP_C3HHeJ_T0066688.1 MGP_C3HHeJ_G0028291.1 mouse_genomes_project 4 115364278 115365256 + Pdzk1ip1 protein_coding processed_transcript MGP_C3HHeJ_T0066689.1 MGP_C3HHeJ_G0028291.1 mouse_genomes_project 4 115364956 115367893 + Pdzk1ip1 protein_coding processed_transcript MGP_C3HHeJ_T0065302.1 MGP_C3HHeJ_G0027968.1 mouse_genomes_project 4 45836648 45842375 - Alg2 protein_coding processed_transcript MGP_C3HHeJ_T0065303.1 MGP_C3HHeJ_G0027968.1 mouse_genomes_project 4 45841437 45845964 - MGP_C3HHeJ_P0065303 Alg2 protein_coding protein_coding MGP_C3HHeJ_T0065304.1 MGP_C3HHeJ_G0027968.1 mouse_genomes_project 4 45843498 45845608 - MGP_C3HHeJ_P0065304 Alg2 protein_coding protein_coding MGP_C3HHeJ_T0007735.1 MGP_C3HHeJ_G0006317.1 mouse_genomes_project 4 26341837 26363234 + Gm11917 lincRNA lincRNA MGP_C3HHeJ_T0068010.1 MGP_C3HHeJ_G0028589.1 mouse_genomes_project 4 133880895 133935945 + MGP_C3HHeJ_P0068010 Slc9a1 protein_coding protein_coding MGP_C3HHeJ_T0068011.1 MGP_C3HHeJ_G0028589.1 mouse_genomes_project 4 133881833 133924538 + Slc9a1 protein_coding processed_transcript MGP_C3HHeJ_T0068012.1 MGP_C3HHeJ_G0028589.1 mouse_genomes_project 4 133928710 133932821 + Slc9a1 protein_coding processed_transcript MGP_C3HHeJ_T0068013.1 MGP_C3HHeJ_G0028589.1 mouse_genomes_project 4 133931752 133932437 + Slc9a1 protein_coding processed_transcript MGP_C3HHeJ_T0068014.1 MGP_C3HHeJ_G0028589.1 mouse_genomes_project 4 133932243 133934586 + Slc9a1 protein_coding processed_transcript MGP_C3HHeJ_T0014244.1 MGP_C3HHeJ_G0012348.1 mouse_genomes_project 4 7895985 7896334 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014272.1 MGP_C3HHeJ_G0012376.1 mouse_genomes_project 4 14993046 14994056 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099388.1 MGP_C3HHeJ_G0037582.1 mouse_genomes_project 4 124701586 124701689 - Gm24480 snRNA snRNA MGP_C3HHeJ_T0068184.1 MGP_C3HHeJ_G0028630.1 mouse_genomes_project 4 135358646 135386406 - MGP_C3HHeJ_P0068184 Ldlrap1 protein_coding protein_coding MGP_C3HHeJ_T0068185.1 MGP_C3HHeJ_G0028630.1 mouse_genomes_project 4 135363665 135367197 - Ldlrap1 protein_coding retained_intron MGP_C3HHeJ_T0068186.1 MGP_C3HHeJ_G0028630.1 mouse_genomes_project 4 135366505 135367939 - Ldlrap1 protein_coding retained_intron MGP_C3HHeJ_T0007893.1 MGP_C3HHeJ_G0006440.1 mouse_genomes_project 4 131860115 131878450 + Gm831 lincRNA lincRNA MGP_C3HHeJ_T0014462.1 MGP_C3HHeJ_G0012566.1 mouse_genomes_project 4 83850781 83851088 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066194.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102742454 102870908 + Sgip1 protein_coding retained_intron MGP_C3HHeJ_T0066195.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102759215 102979829 + MGP_C3HHeJ_P0066195 Sgip1 protein_coding protein_coding MGP_C3HHeJ_T0066196.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102759408 102863803 + Sgip1 protein_coding processed_transcript MGP_C3HHeJ_T0066197.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102759425 102979710 + MGP_C3HHeJ_P0066197 Sgip1 protein_coding protein_coding MGP_C3HHeJ_T0066198.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102759432 102869891 + MGP_C3HHeJ_P0066198 Sgip1 protein_coding protein_coding MGP_C3HHeJ_T0066199.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102759435 102861240 + Sgip1 protein_coding processed_transcript MGP_C3HHeJ_T0066200.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102759443 102979024 + MGP_C3HHeJ_P0066200 Sgip1 protein_coding protein_coding MGP_C3HHeJ_T0066201.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102759455 102870204 + Sgip1 protein_coding processed_transcript MGP_C3HHeJ_T0066202.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102759545 102920463 + MGP_C3HHeJ_P0066202 Sgip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066203.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102759605 102981466 + MGP_C3HHeJ_P0066203 Sgip1 protein_coding protein_coding MGP_C3HHeJ_T0066204.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102870645 102978450 + MGP_C3HHeJ_P0066204 Sgip1 protein_coding protein_coding MGP_C3HHeJ_T0066205.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102922638 102930101 + Sgip1 protein_coding processed_transcript MGP_C3HHeJ_T0066206.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102928551 102930274 + Sgip1 protein_coding processed_transcript MGP_C3HHeJ_T0066207.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102970310 102975861 + Sgip1 protein_coding processed_transcript MGP_C3HHeJ_T0066114.1 MGP_C3HHeJ_G0028176.1 mouse_genomes_project 4 99653360 99668454 + Alg6 protein_coding retained_intron MGP_C3HHeJ_T0066115.1 MGP_C3HHeJ_G0028176.1 mouse_genomes_project 4 99653361 99694908 + Alg6 protein_coding retained_intron MGP_C3HHeJ_T0066116.1 MGP_C3HHeJ_G0028176.1 mouse_genomes_project 4 99653361 99696057 + MGP_C3HHeJ_P0066116 Alg6 protein_coding protein_coding MGP_C3HHeJ_T0066117.1 MGP_C3HHeJ_G0028176.1 mouse_genomes_project 4 99653372 99679048 + Alg6 protein_coding processed_transcript MGP_C3HHeJ_T0066118.1 MGP_C3HHeJ_G0028176.1 mouse_genomes_project 4 99653372 99685673 + MGP_C3HHeJ_P0066118 Alg6 protein_coding protein_coding MGP_C3HHeJ_T0066119.1 MGP_C3HHeJ_G0028176.1 mouse_genomes_project 4 99653372 99685482 + MGP_C3HHeJ_P0066119 Alg6 protein_coding protein_coding MGP_C3HHeJ_T0066120.1 MGP_C3HHeJ_G0028176.1 mouse_genomes_project 4 99656811 99672137 + Alg6 protein_coding retained_intron MGP_C3HHeJ_T0069397.1 MGP_C3HHeJ_G0028914.1 mouse_genomes_project 4 157701067 157713872 - Gabrd protein_coding processed_transcript MGP_C3HHeJ_T0069398.1 MGP_C3HHeJ_G0028914.1 mouse_genomes_project 4 157701067 157713937 - MGP_C3HHeJ_P0069398 Gabrd protein_coding protein_coding MGP_C3HHeJ_T0069399.1 MGP_C3HHeJ_G0028914.1 mouse_genomes_project 4 157704652 157713861 - Gabrd protein_coding processed_transcript MGP_C3HHeJ_T0010521.1 MGP_C3HHeJ_G0008654.1 mouse_genomes_project 4 98503022 98503118 + Gm26154 miRNA miRNA MGP_C3HHeJ_T0098130.1 MGP_C3HHeJ_G0036342.1 mouse_genomes_project 4 47187067 47187179 - Gm24573 rRNA rRNA MGP_C3HHeJ_T0066212.1 MGP_C3HHeJ_G0028199.1 mouse_genomes_project 4 103028635 103031162 - MGP_C3HHeJ_P0066212 Insl5 protein_coding protein_coding MGP_C3HHeJ_T0066213.1 MGP_C3HHeJ_G0028199.1 mouse_genomes_project 4 103028877 103031267 - MGP_C3HHeJ_P0066213 Insl5 protein_coding protein_coding MGP_C3HHeJ_T0064387.1 MGP_C3HHeJ_G0027762.1 mouse_genomes_project 4 9023602 9042169 - MGP_C3HHeJ_P0064387 Fam92a protein_coding protein_coding MGP_C3HHeJ_T0064388.1 MGP_C3HHeJ_G0027762.1 mouse_genomes_project 4 9023916 9042169 - MGP_C3HHeJ_P0064388 Fam92a protein_coding protein_coding MGP_C3HHeJ_T0064389.1 MGP_C3HHeJ_G0027762.1 mouse_genomes_project 4 9023917 9042149 - MGP_C3HHeJ_P0064389 Fam92a protein_coding protein_coding MGP_C3HHeJ_T0064390.1 MGP_C3HHeJ_G0027762.1 mouse_genomes_project 4 9024050 9031288 - Fam92a protein_coding processed_transcript MGP_C3HHeJ_T0064391.1 MGP_C3HHeJ_G0027762.1 mouse_genomes_project 4 9025874 9041322 - MGP_C3HHeJ_P0064391 Fam92a protein_coding protein_coding MGP_C3HHeJ_T0064392.1 MGP_C3HHeJ_G0027762.1 mouse_genomes_project 4 9034274 9042025 - MGP_C3HHeJ_P0064392 Fam92a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064393.1 MGP_C3HHeJ_G0027762.1 mouse_genomes_project 4 9035496 9042149 - Fam92a protein_coding retained_intron MGP_C3HHeJ_T0064394.1 MGP_C3HHeJ_G0027762.1 mouse_genomes_project 4 9035763 9041888 - Fam92a protein_coding retained_intron MGP_C3HHeJ_T0014577.1 MGP_C3HHeJ_G0012681.1 mouse_genomes_project 4 121822915 121823288 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099352.1 MGP_C3HHeJ_G0037546.1 mouse_genomes_project 4 56549512 56549619 - Gm26138 snRNA snRNA MGP_C3HHeJ_T0066165.1 MGP_C3HHeJ_G0028188.1 mouse_genomes_project 4 101578271 101594734 + MGP_C3HHeJ_P0066165 Leprot protein_coding protein_coding MGP_C3HHeJ_T0014515.1 MGP_C3HHeJ_G0012619.1 mouse_genomes_project 4 103551568 103552922 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067486.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126865418 126902560 + MGP_C3HHeJ_P0067486 AU040320 protein_coding protein_coding MGP_C3HHeJ_T0067487.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126865427 126902671 + MGP_C3HHeJ_P0067487 AU040320 protein_coding protein_coding MGP_C3HHeJ_T0067488.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126865429 126984315 + MGP_C3HHeJ_P0067488 AU040320 protein_coding protein_coding MGP_C3HHeJ_T0067489.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126865644 126968583 + MGP_C3HHeJ_P0067489 AU040320 protein_coding protein_coding MGP_C3HHeJ_T0067490.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126865644 126984315 + MGP_C3HHeJ_P0067490 AU040320 protein_coding protein_coding MGP_C3HHeJ_T0067491.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126865668 126902574 + MGP_C3HHeJ_P0067491 AU040320 protein_coding protein_coding MGP_C3HHeJ_T0067492.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126865688 126898220 + AU040320 protein_coding processed_transcript MGP_C3HHeJ_T0067493.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126865700 126866608 + AU040320 protein_coding processed_transcript MGP_C3HHeJ_T0067494.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126929142 126945406 + AU040320 protein_coding processed_transcript MGP_C3HHeJ_T0067495.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126948588 126953876 + AU040320 protein_coding processed_transcript MGP_C3HHeJ_T0067496.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126964576 126967798 + AU040320 protein_coding processed_transcript MGP_C3HHeJ_T0010483.1 MGP_C3HHeJ_G0008616.1 mouse_genomes_project 4 164222 164324 + Mir3471-2 miRNA miRNA MGP_C3HHeJ_T0004446.1 MGP_C3HHeJ_G0003860.1 mouse_genomes_project 4 119472231 119472877 - Gm12863 antisense antisense MGP_C3HHeJ_T0014281.1 MGP_C3HHeJ_G0012385.1 mouse_genomes_project 4 17893796 17894028 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007874.1 MGP_C3HHeJ_G0006427.1 mouse_genomes_project 4 127971301 127972837 - 1700112K13Rik lincRNA lincRNA MGP_C3HHeJ_T0068973.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151359186 151462195 - MGP_C3HHeJ_P0068973 Ube4b protein_coding protein_coding MGP_C3HHeJ_T0068974.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151359192 151366668 - MGP_C3HHeJ_P0068974 Ube4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068975.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151360266 151362605 - Ube4b protein_coding processed_transcript MGP_C3HHeJ_T0068976.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151360443 151461351 - MGP_C3HHeJ_P0068976 Ube4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068977.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151360443 151461351 - MGP_C3HHeJ_P0068977 Ube4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068978.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151366755 151367662 - Ube4b protein_coding processed_transcript MGP_C3HHeJ_T0068979.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151384261 151385242 - Ube4b protein_coding retained_intron MGP_C3HHeJ_T0068980.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151399191 151462077 - Ube4b protein_coding retained_intron MGP_C3HHeJ_T0068981.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151420529 151462046 - Ube4b protein_coding processed_transcript MGP_C3HHeJ_T0068982.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151422513 151423103 - Ube4b protein_coding processed_transcript MGP_C3HHeJ_T0068983.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151434311 151461662 - Ube4b protein_coding retained_intron MGP_C3HHeJ_T0068984.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151434323 151435196 - Ube4b protein_coding processed_transcript MGP_C3HHeJ_T0066478.1 MGP_C3HHeJ_G0028249.1 mouse_genomes_project 4 108511349 108526882 - MGP_C3HHeJ_P0066478 Fam159a protein_coding protein_coding MGP_C3HHeJ_T0001371.1 MGP_C3HHeJ_G0001302.1 mouse_genomes_project 4 5125442 5135214 - TEC TEC MGP_C3HHeJ_T0007709.1 MGP_C3HHeJ_G0006297.1 mouse_genomes_project 4 2282083 2291905 + 4930423M02Rik lincRNA lincRNA MGP_C3HHeJ_T0007710.1 MGP_C3HHeJ_G0006297.1 mouse_genomes_project 4 2282091 2291378 + 4930423M02Rik lincRNA lincRNA MGP_C3HHeJ_T0014501.1 MGP_C3HHeJ_G0012605.1 mouse_genomes_project 4 99333908 99334122 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014459.1 MGP_C3HHeJ_G0012563.1 mouse_genomes_project 4 82493354 82493555 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067333.1 MGP_C3HHeJ_G0028448.1 mouse_genomes_project 4 124718095 124735740 + MGP_C3HHeJ_P0067333 Sf3a3 protein_coding protein_coding MGP_C3HHeJ_T0067334.1 MGP_C3HHeJ_G0028448.1 mouse_genomes_project 4 124718202 124722043 + Sf3a3 protein_coding processed_transcript MGP_C3HHeJ_T0067335.1 MGP_C3HHeJ_G0028448.1 mouse_genomes_project 4 124725048 124726698 + Sf3a3 protein_coding processed_transcript MGP_C3HHeJ_T0066725.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214535 116255036 + Mknk1 protein_coding processed_transcript MGP_C3HHeJ_T0066726.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214535 116255036 + MGP_C3HHeJ_P0066726 Mknk1 protein_coding protein_coding MGP_C3HHeJ_T0066727.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214558 116239932 + MGP_C3HHeJ_P0066727 Mknk1 protein_coding protein_coding MGP_C3HHeJ_T0066728.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214560 116249656 + Mknk1 protein_coding processed_transcript MGP_C3HHeJ_T0066729.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214570 116223919 + Mknk1 protein_coding processed_transcript MGP_C3HHeJ_T0066730.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214570 116255036 + MGP_C3HHeJ_P0066730 Mknk1 protein_coding protein_coding MGP_C3HHeJ_T0066731.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214572 116241899 + MGP_C3HHeJ_P0066731 Mknk1 protein_coding protein_coding MGP_C3HHeJ_T0066732.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214577 116239969 + MGP_C3HHeJ_P0066732 Mknk1 protein_coding protein_coding MGP_C3HHeJ_T0066733.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214581 116232439 + MGP_C3HHeJ_P0066733 Mknk1 protein_coding protein_coding MGP_C3HHeJ_T0066734.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214597 116238628 + Mknk1 protein_coding processed_transcript MGP_C3HHeJ_T0066735.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116232373 116254450 + Mknk1 protein_coding processed_transcript MGP_C3HHeJ_T0066736.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116232447 116252396 + Mknk1 protein_coding processed_transcript MGP_C3HHeJ_T0066737.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116241633 116242694 + Mknk1 protein_coding processed_transcript MGP_C3HHeJ_T0066738.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116250556 116252838 + Mknk1 protein_coding processed_transcript MGP_C3HHeJ_T0066963.1 MGP_C3HHeJ_G0028349.1 mouse_genomes_project 4 118217819 118220280 + MGP_C3HHeJ_P0066963 Gm12845 protein_coding protein_coding MGP_C3HHeJ_T0007926.1 MGP_C3HHeJ_G0006462.1 mouse_genomes_project 4 141460122 141465067 + Gm13016 lincRNA lincRNA MGP_C3HHeJ_T0069037.1 MGP_C3HHeJ_G0028852.1 mouse_genomes_project 4 152184881 152211090 + MGP_C3HHeJ_P0069037 Slc2a5 protein_coding protein_coding MGP_C3HHeJ_T0069038.1 MGP_C3HHeJ_G0028852.1 mouse_genomes_project 4 152195545 152206974 + Slc2a5 protein_coding processed_transcript MGP_C3HHeJ_T0069039.1 MGP_C3HHeJ_G0028852.1 mouse_genomes_project 4 152206286 152209184 + Slc2a5 protein_coding retained_intron MGP_C3HHeJ_T0069040.1 MGP_C3HHeJ_G0028852.1 mouse_genomes_project 4 152206487 152209769 + Slc2a5 protein_coding processed_transcript MGP_C3HHeJ_T0069462.1 MGP_C3HHeJ_G0028926.1 mouse_genomes_project 4 158067484 158072871 + MGP_C3HHeJ_P0069462 Tmem240 protein_coding protein_coding MGP_C3HHeJ_T0069463.1 MGP_C3HHeJ_G0028926.1 mouse_genomes_project 4 158067488 158073293 + Tmem240 protein_coding retained_intron MGP_C3HHeJ_T0069464.1 MGP_C3HHeJ_G0028926.1 mouse_genomes_project 4 158067558 158073293 + MGP_C3HHeJ_P0069464 Tmem240 protein_coding protein_coding MGP_C3HHeJ_T0017850.1 MGP_C3HHeJ_G0015326.1 mouse_genomes_project 4 108748548 108779482 - Gm12743 processed_transcript processed_transcript MGP_C3HHeJ_T0102009.1 MGP_C3HHeJ_G0039974.1 mouse_genomes_project 4 115858936 115860279 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014595.1 MGP_C3HHeJ_G0012699.1 mouse_genomes_project 4 126677838 126678139 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011488.1 MGP_C3HHeJ_G0009621.1 mouse_genomes_project 4 123433017 123433123 + Gm23548 misc_RNA misc_RNA MGP_C3HHeJ_T0000315.1 MGP_C3HHeJ_G0000265.1 mouse_genomes_project 4 79333838 79333901 + mt-Tt Mt_tRNA Mt_tRNA MGP_C3HHeJ_T0066877.1 MGP_C3HHeJ_G0028333.1 mouse_genomes_project 4 117250812 117252616 - MGP_C3HHeJ_P0066877 Hpdl protein_coding protein_coding MGP_C3HHeJ_T0068400.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138548749 138600134 + Rap1gap protein_coding processed_transcript MGP_C3HHeJ_T0068401.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138548777 138595450 + Rap1gap protein_coding retained_intron MGP_C3HHeJ_T0068402.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138564785 138599354 + MGP_C3HHeJ_P0068402 Rap1gap protein_coding protein_coding MGP_C3HHeJ_T0068403.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138564785 138602793 + MGP_C3HHeJ_P0068403 Rap1gap protein_coding protein_coding MGP_C3HHeJ_T0068404.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138564785 138614745 + MGP_C3HHeJ_P0068404 Rap1gap protein_coding protein_coding MGP_C3HHeJ_T0068405.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138565678 138614744 + MGP_C3HHeJ_P0068405 Rap1gap protein_coding protein_coding MGP_C3HHeJ_T0068406.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138571423 138599385 + Rap1gap protein_coding processed_transcript MGP_C3HHeJ_T0068407.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138591228 138614745 + MGP_C3HHeJ_P0068407 Rap1gap protein_coding protein_coding MGP_C3HHeJ_T0068408.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138603708 138613242 + MGP_C3HHeJ_P0068408 Rap1gap protein_coding protein_coding MGP_C3HHeJ_T0068409.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138608830 138614745 + Rap1gap protein_coding retained_intron MGP_C3HHeJ_T0068410.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138610168 138611895 + Rap1gap protein_coding retained_intron MGP_C3HHeJ_T0068411.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138612599 138613820 + Rap1gap protein_coding retained_intron MGP_C3HHeJ_T0068412.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138613064 138613703 + Rap1gap protein_coding retained_intron MGP_C3HHeJ_T0068413.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138613094 138614586 + Rap1gap protein_coding retained_intron MGP_C3HHeJ_T0010509.1 MGP_C3HHeJ_G0008642.1 mouse_genomes_project 4 55520309 55520379 - Mir32 miRNA miRNA MGP_C3HHeJ_T0065537.1 MGP_C3HHeJ_G0028036.1 mouse_genomes_project 4 58079195 58080479 - Susd1 protein_coding retained_intron MGP_C3HHeJ_T0065538.1 MGP_C3HHeJ_G0028036.1 mouse_genomes_project 4 58079195 58203975 - MGP_C3HHeJ_P0065538 Susd1 protein_coding protein_coding MGP_C3HHeJ_T0065539.1 MGP_C3HHeJ_G0028036.1 mouse_genomes_project 4 58079266 58203975 - MGP_C3HHeJ_P0065539 Susd1 protein_coding protein_coding MGP_C3HHeJ_T0065540.1 MGP_C3HHeJ_G0028036.1 mouse_genomes_project 4 58093686 58097448 - Susd1 protein_coding retained_intron MGP_C3HHeJ_T0065541.1 MGP_C3HHeJ_G0028036.1 mouse_genomes_project 4 58096382 58124409 - Susd1 protein_coding retained_intron MGP_C3HHeJ_T0067885.1 MGP_C3HHeJ_G0028562.1 mouse_genomes_project 4 132701754 132725087 + MGP_C3HHeJ_P0067885 Taf12 protein_coding protein_coding MGP_C3HHeJ_T0067886.1 MGP_C3HHeJ_G0028562.1 mouse_genomes_project 4 132701792 132704168 + Taf12 protein_coding processed_transcript MGP_C3HHeJ_T0067887.1 MGP_C3HHeJ_G0028562.1 mouse_genomes_project 4 132701795 132722033 + MGP_C3HHeJ_P0067887 Taf12 protein_coding protein_coding MGP_C3HHeJ_T0014451.1 MGP_C3HHeJ_G0012555.1 mouse_genomes_project 4 77986994 77988271 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066457.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108296209 108310065 + MGP_C3HHeJ_P0066457 Echdc2 protein_coding protein_coding MGP_C3HHeJ_T0066458.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108296238 108309828 + MGP_C3HHeJ_P0066458 Echdc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066459.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108296238 108310064 + MGP_C3HHeJ_P0066459 Echdc2 protein_coding protein_coding MGP_C3HHeJ_T0066460.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108296260 108310063 + MGP_C3HHeJ_P0066460 Echdc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066461.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108296290 108309825 + MGP_C3HHeJ_P0066461 Echdc2 protein_coding protein_coding MGP_C3HHeJ_T0066462.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108300466 108309689 + MGP_C3HHeJ_P0066462 Echdc2 protein_coding protein_coding MGP_C3HHeJ_T0066463.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108300538 108306161 + Echdc2 protein_coding retained_intron MGP_C3HHeJ_T0066464.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108300894 108310064 + Echdc2 protein_coding processed_transcript MGP_C3HHeJ_T0066465.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108300905 108304605 + Echdc2 protein_coding processed_transcript MGP_C3HHeJ_T0066466.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108302913 108309916 + MGP_C3HHeJ_P0066466 Echdc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066467.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108303416 108307856 + Echdc2 protein_coding retained_intron MGP_C3HHeJ_T0066468.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108304443 108309816 + Echdc2 protein_coding retained_intron MGP_C3HHeJ_T0066469.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108304563 108309845 + MGP_C3HHeJ_P0066469 Echdc2 protein_coding protein_coding MGP_C3HHeJ_T0004468.1 MGP_C3HHeJ_G0003878.1 mouse_genomes_project 4 130316483 130339893 - Gm12963 antisense antisense MGP_C3HHeJ_T0004469.1 MGP_C3HHeJ_G0003878.1 mouse_genomes_project 4 130319082 130339893 - Gm12963 antisense antisense MGP_C3HHeJ_T0004470.1 MGP_C3HHeJ_G0003878.1 mouse_genomes_project 4 130319086 130320701 - Gm12963 antisense antisense MGP_C3HHeJ_T0014516.1 MGP_C3HHeJ_G0012620.1 mouse_genomes_project 4 103952529 103952770 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007780.1 MGP_C3HHeJ_G0006355.1 mouse_genomes_project 4 61626116 61639260 + lincRNA lincRNA MGP_C3HHeJ_T0014560.1 MGP_C3HHeJ_G0012664.1 mouse_genomes_project 4 118254216 118254539 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004365.1 MGP_C3HHeJ_G0003799.1 mouse_genomes_project 4 39620809 39622858 + Gm12406 antisense antisense MGP_C3HHeJ_T0065092.1 MGP_C3HHeJ_G0027923.1 mouse_genomes_project 4 41965153 41966958 - MGP_C3HHeJ_P0065092 Olfr159 protein_coding protein_coding MGP_C3HHeJ_T0066516.1 MGP_C3HHeJ_G0028258.1 mouse_genomes_project 4 109010566 109039011 + MGP_C3HHeJ_P0066516 Txndc12 protein_coding protein_coding MGP_C3HHeJ_T0066517.1 MGP_C3HHeJ_G0028258.1 mouse_genomes_project 4 109010600 109023908 + Txndc12 protein_coding processed_transcript MGP_C3HHeJ_T0066520.1 MGP_C3HHeJ_G0028258.1 mouse_genomes_project 4 109028351 109039011 + MGP_C3HHeJ_P0066520 Txndc12 protein_coding unknown_likely_coding MGP_C3HHeJ_T0066521.1 MGP_C3HHeJ_G0028258.1 mouse_genomes_project 4 109034369 109036166 + Txndc12 protein_coding processed_transcript MGP_C3HHeJ_T0067876.1 MGP_C3HHeJ_G0028560.1 mouse_genomes_project 4 132598811 132627124 - MGP_C3HHeJ_P0067876 protein_coding protein_coding MGP_C3HHeJ_T0067877.1 MGP_C3HHeJ_G0028560.1 mouse_genomes_project 4 132600189 132626912 - MGP_C3HHeJ_P0067877 protein_coding protein_coding MGP_C3HHeJ_T0014623.1 MGP_C3HHeJ_G0012727.1 mouse_genomes_project 4 136572574 136573070 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014633.1 MGP_C3HHeJ_G0012737.1 mouse_genomes_project 4 142202914 142203729 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067604.1 MGP_C3HHeJ_G0028510.1 mouse_genomes_project 4 129348048 129355627 + MGP_C3HHeJ_P0067604 Fndc5 protein_coding protein_coding MGP_C3HHeJ_T0014565.1 MGP_C3HHeJ_G0012669.1 mouse_genomes_project 4 119023980 119024572 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099351.1 MGP_C3HHeJ_G0037545.1 mouse_genomes_project 4 56431496 56431600 + Gm24277 snRNA snRNA MGP_C3HHeJ_T0067477.1 MGP_C3HHeJ_G0028480.1 mouse_genomes_project 4 126711696 126716112 + MGP_C3HHeJ_P0067477 5730409E04Rik protein_coding protein_coding MGP_C3HHeJ_T0067478.1 MGP_C3HHeJ_G0028480.1 mouse_genomes_project 4 126711732 126716112 + MGP_C3HHeJ_P0067478 5730409E04Rik protein_coding protein_coding MGP_C3HHeJ_T0065123.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42345295 42391003 - MGP_C3HHeJ_P0065123 Rnf38 protein_coding protein_coding MGP_C3HHeJ_T0065124.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42345298 42390721 - MGP_C3HHeJ_P0065124 Rnf38 protein_coding protein_coding MGP_C3HHeJ_T0065125.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42348505 42382328 - MGP_C3HHeJ_P0065125 Rnf38 protein_coding protein_coding MGP_C3HHeJ_T0065126.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42348509 42391043 - MGP_C3HHeJ_P0065126 Rnf38 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065127.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42348591 42358018 - Rnf38 protein_coding processed_transcript MGP_C3HHeJ_T0065128.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42348593 42357897 - Rnf38 protein_coding processed_transcript MGP_C3HHeJ_T0065129.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42361185 42373850 - MGP_C3HHeJ_P0065129 Rnf38 protein_coding protein_coding MGP_C3HHeJ_T0065130.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42361239 42382439 - MGP_C3HHeJ_P0065130 Rnf38 protein_coding protein_coding MGP_C3HHeJ_T0065131.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42361283 42391400 - MGP_C3HHeJ_P0065131 Rnf38 protein_coding protein_coding MGP_C3HHeJ_T0065132.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42370404 42390930 - Rnf38 protein_coding processed_transcript MGP_C3HHeJ_T0065133.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42370411 42456443 - Rnf38 protein_coding processed_transcript MGP_C3HHeJ_T0065134.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42370440 42391317 - Rnf38 protein_coding processed_transcript MGP_C3HHeJ_T0065135.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42382357 42390887 - Rnf38 protein_coding processed_transcript MGP_C3HHeJ_T0066033.1 MGP_C3HHeJ_G0028157.1 mouse_genomes_project 4 96220986 96287252 - MGP_C3HHeJ_P0066033 Cyp2j8 protein_coding protein_coding MGP_C3HHeJ_T0067581.1 MGP_C3HHeJ_G0028506.1 mouse_genomes_project 4 129197811 129208111 + Ak2 protein_coding processed_transcript MGP_C3HHeJ_T0067582.1 MGP_C3HHeJ_G0028506.1 mouse_genomes_project 4 129199077 129218651 + MGP_C3HHeJ_P0067582 Ak2 protein_coding protein_coding MGP_C3HHeJ_T0067583.1 MGP_C3HHeJ_G0028506.1 mouse_genomes_project 4 129199077 129215523 + MGP_C3HHeJ_P0067583 Ak2 protein_coding protein_coding MGP_C3HHeJ_T0067584.1 MGP_C3HHeJ_G0028506.1 mouse_genomes_project 4 129199206 129215351 + MGP_C3HHeJ_P0067584 Ak2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001387.1 MGP_C3HHeJ_G0001318.1 mouse_genomes_project 4 132510647 132516271 - TEC TEC MGP_C3HHeJ_T0014311.1 MGP_C3HHeJ_G0012415.1 mouse_genomes_project 4 25615327 25616334 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014314.1 MGP_C3HHeJ_G0012418.1 mouse_genomes_project 4 25856933 25857851 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099395.1 MGP_C3HHeJ_G0037589.1 mouse_genomes_project 4 132889943 132890037 + Gm23055 snRNA snRNA MGP_C3HHeJ_T0014470.1 MGP_C3HHeJ_G0012574.1 mouse_genomes_project 4 87663445 87663683 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014398.1 MGP_C3HHeJ_G0012502.1 mouse_genomes_project 4 53979583 53979935 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099403.1 MGP_C3HHeJ_G0037597.1 mouse_genomes_project 4 139534405 139534511 - Gm22961 snRNA snRNA MGP_C3HHeJ_T0099369.1 MGP_C3HHeJ_G0037563.1 mouse_genomes_project 4 101014261 101014324 - Gm22100 snRNA snRNA MGP_C3HHeJ_T0066745.1 MGP_C3HHeJ_G0028310.1 mouse_genomes_project 4 116344201 116396235 - Faah protein_coding retained_intron MGP_C3HHeJ_T0066746.1 MGP_C3HHeJ_G0028310.1 mouse_genomes_project 4 116374320 116396276 - Faah protein_coding retained_intron MGP_C3HHeJ_T0066747.1 MGP_C3HHeJ_G0028310.1 mouse_genomes_project 4 116374320 116396486 - MGP_C3HHeJ_P0066747 Faah protein_coding protein_coding MGP_C3HHeJ_T0066748.1 MGP_C3HHeJ_G0028310.1 mouse_genomes_project 4 116375844 116396287 - Faah protein_coding retained_intron MGP_C3HHeJ_T0066749.1 MGP_C3HHeJ_G0028310.1 mouse_genomes_project 4 116375957 116377720 - Faah protein_coding retained_intron MGP_C3HHeJ_T0066750.1 MGP_C3HHeJ_G0028310.1 mouse_genomes_project 4 116376365 116377589 - Faah protein_coding retained_intron MGP_C3HHeJ_T0066751.1 MGP_C3HHeJ_G0028310.1 mouse_genomes_project 4 116379376 116396235 - Faah protein_coding processed_transcript MGP_C3HHeJ_T0066752.1 MGP_C3HHeJ_G0028310.1 mouse_genomes_project 4 116383381 116396257 - Faah protein_coding processed_transcript MGP_C3HHeJ_T0004475.1 MGP_C3HHeJ_G0003883.1 mouse_genomes_project 4 133996559 133999738 - Gm13257 antisense antisense MGP_C3HHeJ_T0069236.1 MGP_C3HHeJ_G0028886.1 mouse_genomes_project 4 155618176 155739233 - MGP_C3HHeJ_P0069236 Ajap1 protein_coding protein_coding MGP_C3HHeJ_T0069237.1 MGP_C3HHeJ_G0028886.1 mouse_genomes_project 4 155619180 155738601 - MGP_C3HHeJ_P0069237 Ajap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065524.1 MGP_C3HHeJ_G0028031.1 mouse_genomes_project 4 57672042 57697018 + MGP_C3HHeJ_P0065524 Dnajc25 protein_coding protein_coding MGP_C3HHeJ_T0065525.1 MGP_C3HHeJ_G0028031.1 mouse_genomes_project 4 57680135 57700561 + MGP_C3HHeJ_P0065525 Dnajc25 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065526.1 MGP_C3HHeJ_G0028031.1 mouse_genomes_project 4 57680146 57700561 + MGP_C3HHeJ_P0065526 Dnajc25 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065528.1 MGP_C3HHeJ_G0028031.1 mouse_genomes_project 4 57680184 57699489 + MGP_C3HHeJ_P0065528 Dnajc25 protein_coding protein_coding MGP_C3HHeJ_T0068026.1 MGP_C3HHeJ_G0028594.1 mouse_genomes_project 4 134080208 134083340 + MGP_C3HHeJ_P0068026 Nr0b2 protein_coding protein_coding MGP_C3HHeJ_T0004368.1 MGP_C3HHeJ_G0003802.1 mouse_genomes_project 4 41683976 41688279 - Gm12454 antisense antisense MGP_C3HHeJ_T0004369.1 MGP_C3HHeJ_G0003802.1 mouse_genomes_project 4 41685205 41688302 - Gm12454 antisense antisense MGP_C3HHeJ_T0067772.1 MGP_C3HHeJ_G0028539.1 mouse_genomes_project 4 130396865 130423225 + MGP_C3HHeJ_P0067772 Pef1 protein_coding protein_coding MGP_C3HHeJ_T0067773.1 MGP_C3HHeJ_G0028539.1 mouse_genomes_project 4 130402670 130423224 + MGP_C3HHeJ_P0067773 Pef1 protein_coding protein_coding MGP_C3HHeJ_T0065642.1 MGP_C3HHeJ_G0028063.1 mouse_genomes_project 4 62269202 62272806 + MGP_C3HHeJ_P0065642 Orm1 protein_coding protein_coding MGP_C3HHeJ_T0011489.1 MGP_C3HHeJ_G0009622.1 mouse_genomes_project 4 133668098 133668386 - Gm24636 misc_RNA misc_RNA MGP_C3HHeJ_T0064665.1 MGP_C3HHeJ_G0027835.1 mouse_genomes_project 4 32771902 32804773 - MGP_C3HHeJ_P0064665 3110043O21Rik protein_coding protein_coding MGP_C3HHeJ_T0064666.1 MGP_C3HHeJ_G0027835.1 mouse_genomes_project 4 32771907 32805066 - MGP_C3HHeJ_P0064666 3110043O21Rik protein_coding protein_coding MGP_C3HHeJ_T0064667.1 MGP_C3HHeJ_G0027835.1 mouse_genomes_project 4 32777704 32788090 - 3110043O21Rik protein_coding retained_intron MGP_C3HHeJ_T0064668.1 MGP_C3HHeJ_G0027835.1 mouse_genomes_project 4 32791276 32805118 - 3110043O21Rik protein_coding retained_intron MGP_C3HHeJ_T0064669.1 MGP_C3HHeJ_G0027835.1 mouse_genomes_project 4 32797332 32805066 - 3110043O21Rik protein_coding processed_transcript MGP_C3HHeJ_T0064670.1 MGP_C3HHeJ_G0027835.1 mouse_genomes_project 4 32797516 32805066 - 3110043O21Rik protein_coding processed_transcript MGP_C3HHeJ_T0004412.1 MGP_C3HHeJ_G0003833.1 mouse_genomes_project 4 98654806 98661287 + Kank4os antisense antisense MGP_C3HHeJ_T0065424.1 MGP_C3HHeJ_G0028006.1 mouse_genomes_project 4 53915930 53961426 + MGP_C3HHeJ_P0065424 Rad23b protein_coding protein_coding MGP_C3HHeJ_T0065425.1 MGP_C3HHeJ_G0028006.1 mouse_genomes_project 4 53915937 53934124 + Rad23b protein_coding processed_transcript MGP_C3HHeJ_T0065426.1 MGP_C3HHeJ_G0028006.1 mouse_genomes_project 4 53915939 53917072 + Rad23b protein_coding processed_transcript MGP_C3HHeJ_T0065427.1 MGP_C3HHeJ_G0028006.1 mouse_genomes_project 4 53915977 53946652 + Rad23b protein_coding processed_transcript MGP_C3HHeJ_T0010519.1 MGP_C3HHeJ_G0008652.1 mouse_genomes_project 4 91116245 91116325 - Mir6402 miRNA miRNA MGP_C3HHeJ_T0067462.1 MGP_C3HHeJ_G0028477.1 mouse_genomes_project 4 126521164 126554695 - MGP_C3HHeJ_P0067462 Ago1 protein_coding protein_coding MGP_C3HHeJ_T0067463.1 MGP_C3HHeJ_G0028477.1 mouse_genomes_project 4 126524473 126547897 - MGP_C3HHeJ_P0067463 Ago1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067464.1 MGP_C3HHeJ_G0028477.1 mouse_genomes_project 4 126525655 126545322 - MGP_C3HHeJ_P0067464 Ago1 protein_coding protein_coding MGP_C3HHeJ_T0067465.1 MGP_C3HHeJ_G0028477.1 mouse_genomes_project 4 126528719 126529481 - Ago1 protein_coding retained_intron MGP_C3HHeJ_T0067466.1 MGP_C3HHeJ_G0028477.1 mouse_genomes_project 4 126545429 126546240 - Ago1 protein_coding retained_intron MGP_C3HHeJ_T0065434.1 MGP_C3HHeJ_G0028011.1 mouse_genomes_project 4 55371804 55425027 - MGP_C3HHeJ_P0065434 Ikbkap protein_coding protein_coding MGP_C3HHeJ_T0065435.1 MGP_C3HHeJ_G0028011.1 mouse_genomes_project 4 55373136 55379433 - Ikbkap protein_coding retained_intron MGP_C3HHeJ_T0065436.1 MGP_C3HHeJ_G0028011.1 mouse_genomes_project 4 55373139 55385474 - Ikbkap protein_coding retained_intron MGP_C3HHeJ_T0065437.1 MGP_C3HHeJ_G0028011.1 mouse_genomes_project 4 55377002 55380539 - Ikbkap protein_coding retained_intron MGP_C3HHeJ_T0065438.1 MGP_C3HHeJ_G0028011.1 mouse_genomes_project 4 55390015 55394744 - Ikbkap protein_coding retained_intron MGP_C3HHeJ_T0065439.1 MGP_C3HHeJ_G0028011.1 mouse_genomes_project 4 55398590 55401864 - Ikbkap protein_coding retained_intron MGP_C3HHeJ_T0064607.1 MGP_C3HHeJ_G0027821.1 mouse_genomes_project 4 30797981 30996755 + MGP_C3HHeJ_P0064607 Rngtt protein_coding protein_coding MGP_C3HHeJ_T0064608.1 MGP_C3HHeJ_G0027821.1 mouse_genomes_project 4 30797998 30995055 + MGP_C3HHeJ_P0064608 Rngtt protein_coding protein_coding MGP_C3HHeJ_T0064609.1 MGP_C3HHeJ_G0027821.1 mouse_genomes_project 4 30810608 30814411 + Rngtt protein_coding processed_transcript MGP_C3HHeJ_T0064610.1 MGP_C3HHeJ_G0027821.1 mouse_genomes_project 4 30813270 30827475 + Rngtt protein_coding processed_transcript MGP_C3HHeJ_T0064611.1 MGP_C3HHeJ_G0027821.1 mouse_genomes_project 4 30819332 30846868 + Rngtt protein_coding processed_transcript MGP_C3HHeJ_T0004354.1 MGP_C3HHeJ_G0003790.1 mouse_genomes_project 4 17003798 17010485 - 4930480G23Rik antisense antisense MGP_C3HHeJ_T0066522.1 MGP_C3HHeJ_G0028261.1 mouse_genomes_project 4 109055831 109118926 + MGP_C3HHeJ_P0066522 Rab3b protein_coding protein_coding MGP_C3HHeJ_T0066523.1 MGP_C3HHeJ_G0028261.1 mouse_genomes_project 4 109055968 109116794 + MGP_C3HHeJ_P0066523 Rab3b protein_coding protein_coding MGP_C3HHeJ_T0066524.1 MGP_C3HHeJ_G0028261.1 mouse_genomes_project 4 109065653 109116797 + MGP_C3HHeJ_P0066524 Rab3b protein_coding protein_coding MGP_C3HHeJ_T0066525.1 MGP_C3HHeJ_G0028261.1 mouse_genomes_project 4 109114708 109116514 + Rab3b protein_coding processed_transcript MGP_C3HHeJ_T0014636.1 MGP_C3HHeJ_G0012740.1 mouse_genomes_project 4 144390114 144390573 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064307.1 MGP_C3HHeJ_G0027744.1 mouse_genomes_project 4 7613048 7638170 + MGP_C3HHeJ_P0064307 2610301B20Rik protein_coding protein_coding MGP_C3HHeJ_T0064308.1 MGP_C3HHeJ_G0027744.1 mouse_genomes_project 4 7613075 7632217 + 2610301B20Rik protein_coding processed_transcript MGP_C3HHeJ_T0064309.1 MGP_C3HHeJ_G0027744.1 mouse_genomes_project 4 7613115 7636824 + 2610301B20Rik protein_coding processed_transcript MGP_C3HHeJ_T0064310.1 MGP_C3HHeJ_G0027744.1 mouse_genomes_project 4 7613118 7638174 + MGP_C3HHeJ_P0064310 2610301B20Rik protein_coding protein_coding MGP_C3HHeJ_T0064311.1 MGP_C3HHeJ_G0027744.1 mouse_genomes_project 4 7617610 7630631 + 2610301B20Rik protein_coding processed_transcript MGP_C3HHeJ_T0066264.1 MGP_C3HHeJ_G0028210.1 mouse_genomes_project 4 105074204 105150760 - MGP_C3HHeJ_P0066264 Prkaa2 protein_coding protein_coding MGP_C3HHeJ_T0010557.1 MGP_C3HHeJ_G0008690.1 mouse_genomes_project 4 139229349 139229418 - Mir7019 miRNA miRNA MGP_C3HHeJ_T0068570.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141598631 141668377 - MGP_C3HHeJ_P0068570 Arhgef10l protein_coding protein_coding MGP_C3HHeJ_T0068571.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141598631 141739117 - MGP_C3HHeJ_P0068571 Arhgef10l protein_coding protein_coding MGP_C3HHeJ_T0068572.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141598631 141739123 - MGP_C3HHeJ_P0068572 Arhgef10l protein_coding protein_coding MGP_C3HHeJ_T0068573.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141598631 141663653 - MGP_C3HHeJ_P0068573 Arhgef10l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068574.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141598631 141760351 - MGP_C3HHeJ_P0068574 Arhgef10l protein_coding protein_coding MGP_C3HHeJ_T0068575.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141598631 141670901 - MGP_C3HHeJ_P0068575 Arhgef10l protein_coding protein_coding MGP_C3HHeJ_T0068576.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141598631 141739117 - MGP_C3HHeJ_P0068576 Arhgef10l protein_coding protein_coding MGP_C3HHeJ_T0068577.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141628454 141653670 - MGP_C3HHeJ_P0068577 Arhgef10l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068578.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141661984 141668361 - MGP_C3HHeJ_P0068578 Arhgef10l protein_coding protein_coding MGP_C3HHeJ_T0068579.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141667423 141678582 - Arhgef10l protein_coding retained_intron MGP_C3HHeJ_T0068580.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141678473 141739727 - MGP_C3HHeJ_P0068580 Arhgef10l protein_coding protein_coding MGP_C3HHeJ_T0068581.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141679710 141704021 - MGP_C3HHeJ_P0068581 Arhgef10l protein_coding protein_coding MGP_C3HHeJ_T0067152.1 MGP_C3HHeJ_G0028397.1 mouse_genomes_project 4 119961923 119993150 + MGP_C3HHeJ_P0067152 Zmynd12 protein_coding protein_coding MGP_C3HHeJ_T0067153.1 MGP_C3HHeJ_G0028397.1 mouse_genomes_project 4 119961981 119989480 + Zmynd12 protein_coding processed_transcript MGP_C3HHeJ_T0067154.1 MGP_C3HHeJ_G0028397.1 mouse_genomes_project 4 119983851 120007198 + Zmynd12 protein_coding processed_transcript MGP_C3HHeJ_T0102004.1 MGP_C3HHeJ_G0039969.1 mouse_genomes_project 4 112924242 112925289 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004440.1 MGP_C3HHeJ_G0003855.1 mouse_genomes_project 4 117782060 117783969 + Gm12843 antisense antisense MGP_C3HHeJ_T0004441.1 MGP_C3HHeJ_G0003855.1 mouse_genomes_project 4 117782387 117783617 + Gm12843 antisense antisense MGP_C3HHeJ_T0064506.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21611412 21709324 + Mms22l protein_coding retained_intron MGP_C3HHeJ_T0064507.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21611412 21731447 + MGP_C3HHeJ_P0064507 Mms22l protein_coding protein_coding MGP_C3HHeJ_T0064508.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21611423 21625585 + MGP_C3HHeJ_P0064508 Mms22l protein_coding protein_coding MGP_C3HHeJ_T0064509.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21611426 21612006 + Mms22l protein_coding processed_transcript MGP_C3HHeJ_T0064510.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21611505 21731443 + MGP_C3HHeJ_P0064510 Mms22l protein_coding protein_coding MGP_C3HHeJ_T0064511.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21611869 21740916 + MGP_C3HHeJ_P0064511 Mms22l protein_coding unknown_likely_coding MGP_C3HHeJ_T0064512.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21612861 21656234 + MGP_C3HHeJ_P0064512 Mms22l protein_coding protein_coding MGP_C3HHeJ_T0064513.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21632270 21731446 + Mms22l protein_coding retained_intron MGP_C3HHeJ_T0064514.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21634542 21728481 + MGP_C3HHeJ_P0064514 Mms22l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064515.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21663404 21701339 + MGP_C3HHeJ_P0064515 Mms22l protein_coding protein_coding MGP_C3HHeJ_T0064516.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21705391 21719194 + Mms22l protein_coding processed_transcript MGP_C3HHeJ_T0066513.1 MGP_C3HHeJ_G0028257.1 mouse_genomes_project 4 108991822 109009574 - MGP_C3HHeJ_P0066513 Btf3l4 protein_coding protein_coding MGP_C3HHeJ_T0066514.1 MGP_C3HHeJ_G0028257.1 mouse_genomes_project 4 108993754 109001945 - Btf3l4 protein_coding processed_transcript MGP_C3HHeJ_T0066515.1 MGP_C3HHeJ_G0028257.1 mouse_genomes_project 4 109001452 109006523 - Btf3l4 protein_coding processed_transcript MGP_C3HHeJ_T0010494.1 MGP_C3HHeJ_G0008627.1 mouse_genomes_project 4 20736890 20736980 - Gm25978 miRNA miRNA MGP_C3HHeJ_T0014357.1 MGP_C3HHeJ_G0012461.1 mouse_genomes_project 4 39084428 39084762 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065670.1 MGP_C3HHeJ_G0028071.1 mouse_genomes_project 4 62908681 62969558 - MGP_C3HHeJ_P0065670 Tnc protein_coding protein_coding MGP_C3HHeJ_T0065671.1 MGP_C3HHeJ_G0028071.1 mouse_genomes_project 4 62908681 62995824 - MGP_C3HHeJ_P0065671 Tnc protein_coding protein_coding MGP_C3HHeJ_T0065672.1 MGP_C3HHeJ_G0028071.1 mouse_genomes_project 4 62908681 62969558 - MGP_C3HHeJ_P0065672 Tnc protein_coding protein_coding MGP_C3HHeJ_T0065673.1 MGP_C3HHeJ_G0028071.1 mouse_genomes_project 4 62961501 62969558 - MGP_C3HHeJ_P0065673 Tnc protein_coding protein_coding MGP_C3HHeJ_T0066175.1 MGP_C3HHeJ_G0028192.1 mouse_genomes_project 4 101841933 101846836 + MGP_C3HHeJ_P0066175 protein_coding protein_coding MGP_C3HHeJ_T0068765.1 MGP_C3HHeJ_G0028775.1 mouse_genomes_project 4 145004348 145014074 + MGP_C3HHeJ_P0068765 protein_coding protein_coding MGP_C3HHeJ_T0068265.1 MGP_C3HHeJ_G0028648.1 mouse_genomes_project 4 136591917 136594850 - MGP_C3HHeJ_P0068265 Pnrc2 protein_coding protein_coding MGP_C3HHeJ_T0068266.1 MGP_C3HHeJ_G0028648.1 mouse_genomes_project 4 136593323 136594570 - MGP_C3HHeJ_P0068266 Pnrc2 protein_coding protein_coding MGP_C3HHeJ_T0068267.1 MGP_C3HHeJ_G0028648.1 mouse_genomes_project 4 136593450 136594061 - MGP_C3HHeJ_P0068267 Pnrc2 protein_coding protein_coding MGP_C3HHeJ_T0014529.1 MGP_C3HHeJ_G0012633.1 mouse_genomes_project 4 107874037 107874463 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065175.1 MGP_C3HHeJ_G0027937.1 mouse_genomes_project 4 43250477 43279115 - MGP_C3HHeJ_P0065175 Zbtb5 protein_coding protein_coding MGP_C3HHeJ_T0065176.1 MGP_C3HHeJ_G0027937.1 mouse_genomes_project 4 43253983 43278848 - MGP_C3HHeJ_P0065176 Zbtb5 protein_coding protein_coding MGP_C3HHeJ_T0064452.1 MGP_C3HHeJ_G0027785.1 mouse_genomes_project 4 17034039 17047414 + MGP_C3HHeJ_P0064452 Ttpa protein_coding protein_coding MGP_C3HHeJ_T0064453.1 MGP_C3HHeJ_G0027785.1 mouse_genomes_project 4 17034544 17055130 + MGP_C3HHeJ_P0064453 Ttpa protein_coding protein_coding MGP_C3HHeJ_T0011475.1 MGP_C3HHeJ_G0009608.1 mouse_genomes_project 4 77955752 77955838 + Gm22262 misc_RNA misc_RNA MGP_C3HHeJ_T0010564.1 MGP_C3HHeJ_G0008697.1 mouse_genomes_project 4 144373633 144373696 - Mir7021 miRNA miRNA MGP_C3HHeJ_T0068324.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137060567 137091754 + MGP_C3HHeJ_P0068324 Hnrnpr protein_coding protein_coding MGP_C3HHeJ_T0068325.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137060593 137110589 + MGP_C3HHeJ_P0068325 Hnrnpr protein_coding protein_coding MGP_C3HHeJ_T0068326.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137060593 137091754 + MGP_C3HHeJ_P0068326 Hnrnpr protein_coding protein_coding MGP_C3HHeJ_T0068327.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137060650 137091936 + MGP_C3HHeJ_P0068327 Hnrnpr protein_coding protein_coding MGP_C3HHeJ_T0068328.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137060653 137080458 + MGP_C3HHeJ_P0068328 Hnrnpr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068329.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137061160 137077592 + MGP_C3HHeJ_P0068329 Hnrnpr protein_coding protein_coding MGP_C3HHeJ_T0068330.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137061216 137080486 + MGP_C3HHeJ_P0068330 Hnrnpr protein_coding protein_coding MGP_C3HHeJ_T0068331.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137061310 137066050 + MGP_C3HHeJ_P0068331 Hnrnpr protein_coding protein_coding MGP_C3HHeJ_T0068332.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137086855 137090055 + Hnrnpr protein_coding retained_intron MGP_C3HHeJ_T0068333.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137089800 137094039 + Hnrnpr protein_coding retained_intron MGP_C3HHeJ_T0068334.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137106926 137109191 + Hnrnpr protein_coding processed_transcript MGP_C3HHeJ_T0066951.1 MGP_C3HHeJ_G0028347.1 mouse_genomes_project 4 118049016 118174587 + MGP_C3HHeJ_P0066951 Eri3 protein_coding protein_coding MGP_C3HHeJ_T0066952.1 MGP_C3HHeJ_G0028347.1 mouse_genomes_project 4 118051260 118081294 + MGP_C3HHeJ_P0066952 Eri3 protein_coding protein_coding MGP_C3HHeJ_T0066953.1 MGP_C3HHeJ_G0028347.1 mouse_genomes_project 4 118063324 118174587 + Eri3 protein_coding processed_transcript MGP_C3HHeJ_T0066954.1 MGP_C3HHeJ_G0028347.1 mouse_genomes_project 4 118081263 118116520 + MGP_C3HHeJ_P0066954 Eri3 protein_coding protein_coding MGP_C3HHeJ_T0066955.1 MGP_C3HHeJ_G0028347.1 mouse_genomes_project 4 118087654 118116179 + Eri3 protein_coding processed_transcript MGP_C3HHeJ_T0066956.1 MGP_C3HHeJ_G0028347.1 mouse_genomes_project 4 118138168 118174571 + Eri3 protein_coding processed_transcript MGP_C3HHeJ_T0017823.1 MGP_C3HHeJ_G0015306.1 mouse_genomes_project 4 44059902 44061749 - Gm12409 processed_transcript processed_transcript MGP_C3HHeJ_T0014661.1 MGP_C3HHeJ_G0012765.1 mouse_genomes_project 4 156315170 156315860 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067665.1 MGP_C3HHeJ_G0028524.1 mouse_genomes_project 4 129796664 129809166 - MGP_C3HHeJ_P0067665 Lck protein_coding protein_coding MGP_C3HHeJ_T0067666.1 MGP_C3HHeJ_G0028524.1 mouse_genomes_project 4 129796669 129824989 - MGP_C3HHeJ_P0067666 Lck protein_coding protein_coding MGP_C3HHeJ_T0067667.1 MGP_C3HHeJ_G0028524.1 mouse_genomes_project 4 129796669 129809185 - MGP_C3HHeJ_P0067667 Lck protein_coding protein_coding MGP_C3HHeJ_T0067668.1 MGP_C3HHeJ_G0028524.1 mouse_genomes_project 4 129797215 129806651 - Lck protein_coding retained_intron MGP_C3HHeJ_T0067669.1 MGP_C3HHeJ_G0028524.1 mouse_genomes_project 4 129801704 129807034 - Lck protein_coding retained_intron MGP_C3HHeJ_T0067670.1 MGP_C3HHeJ_G0028524.1 mouse_genomes_project 4 129806278 129807264 - Lck protein_coding retained_intron MGP_C3HHeJ_T0067671.1 MGP_C3HHeJ_G0028524.1 mouse_genomes_project 4 129807656 129808881 - Lck protein_coding retained_intron MGP_C3HHeJ_T0067672.1 MGP_C3HHeJ_G0028524.1 mouse_genomes_project 4 129808158 129809166 - MGP_C3HHeJ_P0067672 Lck protein_coding protein_coding MGP_C3HHeJ_T0010545.1 MGP_C3HHeJ_G0008678.1 mouse_genomes_project 4 133694026 133694088 + Mir7017 miRNA miRNA MGP_C3HHeJ_T0014598.1 MGP_C3HHeJ_G0012702.1 mouse_genomes_project 4 127169869 127170089 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004449.1 MGP_C3HHeJ_G0003863.1 mouse_genomes_project 4 119782040 119786459 - Gm12927 antisense antisense MGP_C3HHeJ_T0014270.1 MGP_C3HHeJ_G0012374.1 mouse_genomes_project 4 13995239 13995718 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068426.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138887780 139012952 + MGP_C3HHeJ_P0068426 Eif4g3 protein_coding protein_coding MGP_C3HHeJ_T0068427.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138887780 139002092 + MGP_C3HHeJ_P0068427 Eif4g3 protein_coding protein_coding MGP_C3HHeJ_T0068428.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138887780 139024347 + MGP_C3HHeJ_P0068428 Eif4g3 protein_coding protein_coding MGP_C3HHeJ_T0068429.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138888214 139103770 + MGP_C3HHeJ_P0068429 Eif4g3 protein_coding protein_coding MGP_C3HHeJ_T0068430.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138888214 139103770 + MGP_C3HHeJ_P0068430 Eif4g3 protein_coding protein_coding MGP_C3HHeJ_T0068431.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138888234 138888918 + Eif4g3 protein_coding processed_transcript MGP_C3HHeJ_T0068432.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138888242 138953867 + Eif4g3 protein_coding processed_transcript MGP_C3HHeJ_T0068433.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138888271 139102854 + MGP_C3HHeJ_P0068433 Eif4g3 protein_coding protein_coding MGP_C3HHeJ_T0068434.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138888706 139103753 + MGP_C3HHeJ_P0068434 Eif4g3 protein_coding protein_coding MGP_C3HHeJ_T0068435.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138900106 139000067 + MGP_C3HHeJ_P0068435 Eif4g3 protein_coding protein_coding MGP_C3HHeJ_T0068436.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 139048538 139105180 + MGP_C3HHeJ_P0068436 Eif4g3 protein_coding protein_coding MGP_C3HHeJ_T0068437.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 139074854 139105180 + Eif4g3 protein_coding processed_transcript MGP_C3HHeJ_T0068438.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 139077510 139085460 + Eif4g3 protein_coding retained_intron MGP_C3HHeJ_T0068439.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 139081475 139085238 + Eif4g3 protein_coding processed_transcript MGP_C3HHeJ_T0068440.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 139098414 139100145 + Eif4g3 protein_coding processed_transcript MGP_C3HHeJ_T0014438.1 MGP_C3HHeJ_G0012542.1 mouse_genomes_project 4 74261458 74261773 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068356.1 MGP_C3HHeJ_G0028667.1 mouse_genomes_project 4 137385831 137388773 + MGP_C3HHeJ_P0068356 4930549C01Rik protein_coding protein_coding MGP_C3HHeJ_T0014233.1 MGP_C3HHeJ_G0012337.1 mouse_genomes_project 4 3713135 3713603 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014296.1 MGP_C3HHeJ_G0012400.1 mouse_genomes_project 4 22437518 22438212 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099333.1 MGP_C3HHeJ_G0037527.1 mouse_genomes_project 4 23085935 23086041 + Gm24965 snRNA snRNA MGP_C3HHeJ_T0014522.1 MGP_C3HHeJ_G0012626.1 mouse_genomes_project 4 106150837 106151196 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068478.1 MGP_C3HHeJ_G0028697.1 mouse_genomes_project 4 139667504 139682530 - MGP_C3HHeJ_P0068478 Ubxn10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068479.1 MGP_C3HHeJ_G0028697.1 mouse_genomes_project 4 139675883 139682574 - MGP_C3HHeJ_P0068479 Ubxn10 protein_coding protein_coding MGP_C3HHeJ_T0068480.1 MGP_C3HHeJ_G0028697.1 mouse_genomes_project 4 139675883 139694511 - MGP_C3HHeJ_P0068480 Ubxn10 protein_coding protein_coding MGP_C3HHeJ_T0068481.1 MGP_C3HHeJ_G0028697.1 mouse_genomes_project 4 139676183 139682167 - MGP_C3HHeJ_P0068481 Ubxn10 protein_coding protein_coding MGP_C3HHeJ_T0068485.1 MGP_C3HHeJ_G0028697.1 mouse_genomes_project 4 139689226 139694480 - Ubxn10 protein_coding processed_transcript MGP_C3HHeJ_T0068998.1 MGP_C3HHeJ_G0028845.1 mouse_genomes_project 4 151626191 151701484 + MGP_C3HHeJ_P0068998 Clstn1 protein_coding protein_coding MGP_C3HHeJ_T0068999.1 MGP_C3HHeJ_G0028845.1 mouse_genomes_project 4 151626757 151679681 + Clstn1 protein_coding processed_transcript MGP_C3HHeJ_T0069000.1 MGP_C3HHeJ_G0028845.1 mouse_genomes_project 4 151679485 151684407 + Clstn1 protein_coding retained_intron MGP_C3HHeJ_T0014239.1 MGP_C3HHeJ_G0012343.1 mouse_genomes_project 4 6697650 6698313 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007836.1 MGP_C3HHeJ_G0006402.1 mouse_genomes_project 4 107799912 107872986 + 1700047F07Rik lincRNA lincRNA MGP_C3HHeJ_T0007837.1 MGP_C3HHeJ_G0006402.1 mouse_genomes_project 4 107799944 107819431 + 1700047F07Rik lincRNA lincRNA MGP_C3HHeJ_T0007838.1 MGP_C3HHeJ_G0006402.1 mouse_genomes_project 4 107817877 107827988 + 1700047F07Rik lincRNA lincRNA MGP_C3HHeJ_T0007839.1 MGP_C3HHeJ_G0006402.1 mouse_genomes_project 4 107817900 107819488 + 1700047F07Rik lincRNA lincRNA MGP_C3HHeJ_T0064419.1 MGP_C3HHeJ_G0027771.1 mouse_genomes_project 4 12771295 12799407 + MGP_C3HHeJ_P0064419 Calb1 protein_coding protein_coding MGP_C3HHeJ_T0064420.1 MGP_C3HHeJ_G0027771.1 mouse_genomes_project 4 12771297 12786723 + Calb1 protein_coding retained_intron MGP_C3HHeJ_T0064421.1 MGP_C3HHeJ_G0027771.1 mouse_genomes_project 4 12776396 12787029 + Calb1 protein_coding retained_intron MGP_C3HHeJ_T0011472.1 MGP_C3HHeJ_G0009605.1 mouse_genomes_project 4 53034877 53035119 + Gm25687 misc_RNA misc_RNA MGP_C3HHeJ_T0099349.1 MGP_C3HHeJ_G0037543.1 mouse_genomes_project 4 47939373 47939477 + Gm26424 snRNA snRNA MGP_C3HHeJ_T0101991.1 MGP_C3HHeJ_G0039956.1 mouse_genomes_project 4 86135540 86141627 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0069238.1 MGP_C3HHeJ_G0028887.1 mouse_genomes_project 4 156227439 156232128 + MGP_C3HHeJ_P0069238 A430005L14Rik protein_coding protein_coding MGP_C3HHeJ_T0069239.1 MGP_C3HHeJ_G0028887.1 mouse_genomes_project 4 156227439 156232121 + MGP_C3HHeJ_P0069239 A430005L14Rik protein_coding protein_coding MGP_C3HHeJ_T0069240.1 MGP_C3HHeJ_G0028887.1 mouse_genomes_project 4 156227457 156230269 + A430005L14Rik protein_coding retained_intron MGP_C3HHeJ_T0069241.1 MGP_C3HHeJ_G0028887.1 mouse_genomes_project 4 156227468 156231714 + MGP_C3HHeJ_P0069241 A430005L14Rik protein_coding protein_coding MGP_C3HHeJ_T0069242.1 MGP_C3HHeJ_G0028887.1 mouse_genomes_project 4 156227468 156232006 + MGP_C3HHeJ_P0069242 A430005L14Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069243.1 MGP_C3HHeJ_G0028887.1 mouse_genomes_project 4 156227531 156230937 + A430005L14Rik protein_coding processed_transcript MGP_C3HHeJ_T0069244.1 MGP_C3HHeJ_G0028887.1 mouse_genomes_project 4 156229994 156231292 + A430005L14Rik protein_coding retained_intron MGP_C3HHeJ_T0067237.1 MGP_C3HHeJ_G0028421.1 mouse_genomes_project 4 121903057 121914195 - MGP_C3HHeJ_P0067237 Gm12888 protein_coding protein_coding MGP_C3HHeJ_T0066303.1 MGP_C3HHeJ_G0028223.1 mouse_genomes_project 4 106818030 106874306 - MGP_C3HHeJ_P0066303 Acot11 protein_coding protein_coding MGP_C3HHeJ_T0066304.1 MGP_C3HHeJ_G0028223.1 mouse_genomes_project 4 106820669 106879464 - MGP_C3HHeJ_P0066304 Acot11 protein_coding protein_coding MGP_C3HHeJ_T0066305.1 MGP_C3HHeJ_G0028223.1 mouse_genomes_project 4 106820825 106845821 - MGP_C3HHeJ_P0066305 Acot11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066306.1 MGP_C3HHeJ_G0028223.1 mouse_genomes_project 4 106827460 106829713 - Acot11 protein_coding processed_transcript MGP_C3HHeJ_T0066307.1 MGP_C3HHeJ_G0028223.1 mouse_genomes_project 4 106836645 106874303 - MGP_C3HHeJ_P0066307 Acot11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066308.1 MGP_C3HHeJ_G0028223.1 mouse_genomes_project 4 106838055 106874250 - MGP_C3HHeJ_P0066308 Acot11 protein_coding protein_coding MGP_C3HHeJ_T0066309.1 MGP_C3HHeJ_G0028223.1 mouse_genomes_project 4 106838098 106874709 - MGP_C3HHeJ_P0066309 Acot11 protein_coding protein_coding MGP_C3HHeJ_T0066825.1 MGP_C3HHeJ_G0028325.1 mouse_genomes_project 4 117011735 117037900 - MGP_C3HHeJ_P0066825 Nasp protein_coding protein_coding MGP_C3HHeJ_T0066826.1 MGP_C3HHeJ_G0028325.1 mouse_genomes_project 4 117012292 117038344 - MGP_C3HHeJ_P0066826 Nasp protein_coding protein_coding MGP_C3HHeJ_T0066827.1 MGP_C3HHeJ_G0028325.1 mouse_genomes_project 4 117012292 117037881 - MGP_C3HHeJ_P0066827 Nasp protein_coding protein_coding MGP_C3HHeJ_T0066828.1 MGP_C3HHeJ_G0028325.1 mouse_genomes_project 4 117013409 117016932 - Nasp protein_coding processed_transcript MGP_C3HHeJ_T0066829.1 MGP_C3HHeJ_G0028325.1 mouse_genomes_project 4 117013475 117015609 - Nasp protein_coding processed_transcript MGP_C3HHeJ_T0066830.1 MGP_C3HHeJ_G0028325.1 mouse_genomes_project 4 117022150 117037896 - Nasp protein_coding processed_transcript MGP_C3HHeJ_T0066831.1 MGP_C3HHeJ_G0028325.1 mouse_genomes_project 4 117027679 117034331 - Nasp protein_coding processed_transcript MGP_C3HHeJ_T0066832.1 MGP_C3HHeJ_G0028325.1 mouse_genomes_project 4 117029281 117037851 - Nasp protein_coding processed_transcript MGP_C3HHeJ_T0004432.1 MGP_C3HHeJ_G0003848.1 mouse_genomes_project 4 110201913 110202988 - Dmrta2os antisense antisense MGP_C3HHeJ_T0004433.1 MGP_C3HHeJ_G0003848.1 mouse_genomes_project 4 110201922 110202666 - Dmrta2os antisense antisense MGP_C3HHeJ_T0102007.1 MGP_C3HHeJ_G0039972.1 mouse_genomes_project 4 115430277 115437905 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0066716.1 MGP_C3HHeJ_G0028303.1 mouse_genomes_project 4 116153595 116154780 - MGP_C3HHeJ_P0066716 Tex38 protein_coding protein_coding MGP_C3HHeJ_T0014427.1 MGP_C3HHeJ_G0012531.1 mouse_genomes_project 4 70798585 70800297 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065070.1 MGP_C3HHeJ_G0027916.1 mouse_genomes_project 4 41845203 41846028 - MGP_C3HHeJ_P0065070 Spag8 protein_coding protein_coding MGP_C3HHeJ_T0065071.1 MGP_C3HHeJ_G0027916.1 mouse_genomes_project 4 41845203 41847421 - MGP_C3HHeJ_P0065071 Spag8 protein_coding protein_coding MGP_C3HHeJ_T0065072.1 MGP_C3HHeJ_G0027916.1 mouse_genomes_project 4 41845544 41847463 - MGP_C3HHeJ_P0065072 Spag8 protein_coding protein_coding MGP_C3HHeJ_T0065219.1 MGP_C3HHeJ_G0027948.1 mouse_genomes_project 4 44146446 44191367 + MGP_C3HHeJ_P0065219 Stra6l protein_coding protein_coding MGP_C3HHeJ_T0065220.1 MGP_C3HHeJ_G0027948.1 mouse_genomes_project 4 44146598 44191367 + MGP_C3HHeJ_P0065220 Stra6l protein_coding protein_coding MGP_C3HHeJ_T0065221.1 MGP_C3HHeJ_G0027948.1 mouse_genomes_project 4 44146729 44191367 + MGP_C3HHeJ_P0065221 Stra6l protein_coding protein_coding MGP_C3HHeJ_T0065222.1 MGP_C3HHeJ_G0027948.1 mouse_genomes_project 4 44146779 44164090 + Stra6l protein_coding processed_transcript MGP_C3HHeJ_T0065223.1 MGP_C3HHeJ_G0027948.1 mouse_genomes_project 4 44178565 44190977 + Stra6l protein_coding retained_intron MGP_C3HHeJ_T0065929.1 MGP_C3HHeJ_G0028122.1 mouse_genomes_project 4 88290091 88290661 - MGP_C3HHeJ_P0065929 Ifna16 protein_coding protein_coding MGP_C3HHeJ_T0004378.1 MGP_C3HHeJ_G0003810.1 mouse_genomes_project 4 43513127 43522451 - Frmpd1os antisense antisense MGP_C3HHeJ_T0014313.1 MGP_C3HHeJ_G0012417.1 mouse_genomes_project 4 25824010 25824769 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064789.1 MGP_C3HHeJ_G0027865.1 mouse_genomes_project 4 39639499 39682526 - MGP_C3HHeJ_P0064789 Cntfr protein_coding protein_coding MGP_C3HHeJ_T0064790.1 MGP_C3HHeJ_G0027865.1 mouse_genomes_project 4 39639499 39684160 - MGP_C3HHeJ_P0064790 Cntfr protein_coding protein_coding MGP_C3HHeJ_T0064791.1 MGP_C3HHeJ_G0027865.1 mouse_genomes_project 4 39645297 39646065 - Cntfr protein_coding processed_transcript MGP_C3HHeJ_T0064792.1 MGP_C3HHeJ_G0027865.1 mouse_genomes_project 4 39651435 39682529 - MGP_C3HHeJ_P0064792 Cntfr protein_coding protein_coding MGP_C3HHeJ_T0064793.1 MGP_C3HHeJ_G0027865.1 mouse_genomes_project 4 39651435 39684160 - MGP_C3HHeJ_P0064793 Cntfr protein_coding protein_coding MGP_C3HHeJ_T0064794.1 MGP_C3HHeJ_G0027865.1 mouse_genomes_project 4 39652743 39683019 - MGP_C3HHeJ_P0064794 Cntfr protein_coding protein_coding MGP_C3HHeJ_T0067362.1 MGP_C3HHeJ_G0028455.1 mouse_genomes_project 4 124928667 124946839 - MGP_C3HHeJ_P0067362 Cdca8 protein_coding protein_coding MGP_C3HHeJ_T0067363.1 MGP_C3HHeJ_G0028455.1 mouse_genomes_project 4 124929313 124946795 - MGP_C3HHeJ_P0067363 Cdca8 protein_coding protein_coding MGP_C3HHeJ_T0067364.1 MGP_C3HHeJ_G0028455.1 mouse_genomes_project 4 124929758 124946329 - Cdca8 protein_coding processed_transcript MGP_C3HHeJ_T0067365.1 MGP_C3HHeJ_G0028455.1 mouse_genomes_project 4 124933826 124946703 - Cdca8 protein_coding processed_transcript MGP_C3HHeJ_T0067366.1 MGP_C3HHeJ_G0028455.1 mouse_genomes_project 4 124934006 124946764 - Cdca8 protein_coding retained_intron MGP_C3HHeJ_T0067367.1 MGP_C3HHeJ_G0028455.1 mouse_genomes_project 4 124936884 124949233 - MGP_C3HHeJ_P0067367 Cdca8 protein_coding protein_coding MGP_C3HHeJ_T0017852.1 MGP_C3HHeJ_G0015328.1 mouse_genomes_project 4 109864355 109870661 - 9630013D21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017853.1 MGP_C3HHeJ_G0015328.1 mouse_genomes_project 4 109865321 109870687 - 9630013D21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017854.1 MGP_C3HHeJ_G0015328.1 mouse_genomes_project 4 109865448 109866965 - 9630013D21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017855.1 MGP_C3HHeJ_G0015328.1 mouse_genomes_project 4 109865786 109870442 - 9630013D21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0065523.1 MGP_C3HHeJ_G0028030.1 mouse_genomes_project 4 57641773 57664199 - MGP_C3HHeJ_P0065523 Ptgr1 protein_coding protein_coding MGP_C3HHeJ_T0014510.1 MGP_C3HHeJ_G0012614.1 mouse_genomes_project 4 101282665 101283379 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068368.1 MGP_C3HHeJ_G0028673.1 mouse_genomes_project 4 137732897 137760010 - MGP_C3HHeJ_P0068368 Epha8 protein_coding protein_coding MGP_C3HHeJ_T0007758.1 MGP_C3HHeJ_G0006339.1 mouse_genomes_project 4 50481211 50564486 - C630028M04Rik lincRNA lincRNA MGP_C3HHeJ_T0007854.1 MGP_C3HHeJ_G0006416.1 mouse_genomes_project 4 123869552 123875754 - Gm26606 lincRNA lincRNA MGP_C3HHeJ_T0007863.1 MGP_C3HHeJ_G0006421.1 mouse_genomes_project 4 124566781 124572769 + 4933407E24Rik lincRNA lincRNA MGP_C3HHeJ_T0014647.1 MGP_C3HHeJ_G0012751.1 mouse_genomes_project 4 149741140 149741566 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066492.1 MGP_C3HHeJ_G0028252.1 mouse_genomes_project 4 108720427 108724271 - Prpf38a protein_coding processed_transcript MGP_C3HHeJ_T0066493.1 MGP_C3HHeJ_G0028252.1 mouse_genomes_project 4 108722125 108735661 - MGP_C3HHeJ_P0066493 Prpf38a protein_coding protein_coding MGP_C3HHeJ_T0066494.1 MGP_C3HHeJ_G0028252.1 mouse_genomes_project 4 108722128 108729932 - Prpf38a protein_coding processed_transcript MGP_C3HHeJ_T0014620.1 MGP_C3HHeJ_G0012724.1 mouse_genomes_project 4 136070243 136070321 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068541.1 MGP_C3HHeJ_G0028714.1 mouse_genomes_project 4 140348415 140376817 + MGP_C3HHeJ_P0068541 Emc1 protein_coding protein_coding MGP_C3HHeJ_T0068542.1 MGP_C3HHeJ_G0028714.1 mouse_genomes_project 4 140348421 140376817 + MGP_C3HHeJ_P0068542 Emc1 protein_coding protein_coding MGP_C3HHeJ_T0068543.1 MGP_C3HHeJ_G0028714.1 mouse_genomes_project 4 140348421 140376817 + MGP_C3HHeJ_P0068543 Emc1 protein_coding protein_coding MGP_C3HHeJ_T0068544.1 MGP_C3HHeJ_G0028714.1 mouse_genomes_project 4 140348437 140350261 + Emc1 protein_coding processed_transcript MGP_C3HHeJ_T0068546.1 MGP_C3HHeJ_G0028714.1 mouse_genomes_project 4 140356097 140373259 + Emc1 protein_coding processed_transcript MGP_C3HHeJ_T0014380.1 MGP_C3HHeJ_G0012484.1 mouse_genomes_project 4 50759476 50760096 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014285.1 MGP_C3HHeJ_G0012389.1 mouse_genomes_project 4 19074593 19076021 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067446.1 MGP_C3HHeJ_G0028474.1 mouse_genomes_project 4 126399133 126404456 - Adprhl2 protein_coding processed_transcript MGP_C3HHeJ_T0067447.1 MGP_C3HHeJ_G0028474.1 mouse_genomes_project 4 126399133 126404790 - MGP_C3HHeJ_P0067447 Adprhl2 protein_coding protein_coding MGP_C3HHeJ_T0067448.1 MGP_C3HHeJ_G0028474.1 mouse_genomes_project 4 126399138 126404554 - Adprhl2 protein_coding processed_transcript MGP_C3HHeJ_T0067449.1 MGP_C3HHeJ_G0028474.1 mouse_genomes_project 4 126401237 126404448 - Adprhl2 protein_coding processed_transcript MGP_C3HHeJ_T0007920.1 MGP_C3HHeJ_G0006457.1 mouse_genomes_project 4 139112356 139112832 + 2310026L22Rik lincRNA lincRNA MGP_C3HHeJ_T0014356.1 MGP_C3HHeJ_G0012460.1 mouse_genomes_project 4 38630868 38631265 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014323.1 MGP_C3HHeJ_G0012427.1 mouse_genomes_project 4 29463944 29466075 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014643.1 MGP_C3HHeJ_G0012747.1 mouse_genomes_project 4 145020340 145020596 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014289.1 MGP_C3HHeJ_G0012393.1 mouse_genomes_project 4 19789893 19790595 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014641.1 MGP_C3HHeJ_G0012745.1 mouse_genomes_project 4 144950164 144950757 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010547.1 MGP_C3HHeJ_G0008680.1 mouse_genomes_project 4 134087798 134087924 - Gm23158 miRNA miRNA MGP_C3HHeJ_T0014498.1 MGP_C3HHeJ_G0012602.1 mouse_genomes_project 4 98188445 98188753 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067233.1 MGP_C3HHeJ_G0028419.1 mouse_genomes_project 4 121700587 121704163 - MGP_C3HHeJ_P0067233 Tmco2 protein_coding protein_coding MGP_C3HHeJ_T0014456.1 MGP_C3HHeJ_G0012560.1 mouse_genomes_project 4 79791973 79792457 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017859.1 MGP_C3HHeJ_G0015331.1 mouse_genomes_project 4 117687579 117688028 - 1700012C08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0065256.1 MGP_C3HHeJ_G0027955.1 mouse_genomes_project 4 44669920 44672725 + MGP_C3HHeJ_P0065256 Foxe1 protein_coding protein_coding MGP_C3HHeJ_T0098136.1 MGP_C3HHeJ_G0036348.1 mouse_genomes_project 4 111632038 111632154 - n-R5s191 rRNA rRNA MGP_C3HHeJ_T0064527.1 MGP_C3HHeJ_G0027800.1 mouse_genomes_project 4 22108342 22150098 + Gpr63 protein_coding processed_transcript MGP_C3HHeJ_T0064528.1 MGP_C3HHeJ_G0027800.1 mouse_genomes_project 4 22115452 22152031 + MGP_C3HHeJ_P0064528 Gpr63 protein_coding protein_coding MGP_C3HHeJ_T0064480.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18899315 18927573 + MGP_C3HHeJ_P0064480 Pnisr protein_coding protein_coding MGP_C3HHeJ_T0064481.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18899780 18924853 + MGP_C3HHeJ_P0064481 Pnisr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064482.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18899787 18927565 + MGP_C3HHeJ_P0064482 Pnisr protein_coding protein_coding MGP_C3HHeJ_T0064483.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18899790 18912201 + Pnisr protein_coding processed_transcript MGP_C3HHeJ_T0064484.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18899790 18922440 + MGP_C3HHeJ_P0064484 Pnisr protein_coding protein_coding MGP_C3HHeJ_T0064485.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18899796 18909723 + Pnisr protein_coding processed_transcript MGP_C3HHeJ_T0064486.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18899805 18906657 + Pnisr protein_coding processed_transcript MGP_C3HHeJ_T0064487.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18899813 18913856 + Pnisr protein_coding processed_transcript MGP_C3HHeJ_T0064488.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18905800 18910935 + Pnisr protein_coding processed_transcript MGP_C3HHeJ_T0064489.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18910458 18913776 + Pnisr protein_coding processed_transcript MGP_C3HHeJ_T0064490.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18910731 18912619 + Pnisr protein_coding processed_transcript MGP_C3HHeJ_T0064491.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18922131 18924962 + Pnisr protein_coding processed_transcript MGP_C3HHeJ_T0064492.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18925301 18926354 + Pnisr protein_coding processed_transcript MGP_C3HHeJ_T0065453.1 MGP_C3HHeJ_G0028014.1 mouse_genomes_project 4 55490436 55579954 - MGP_C3HHeJ_P0065453 Tmem245 protein_coding protein_coding MGP_C3HHeJ_T0065454.1 MGP_C3HHeJ_G0028014.1 mouse_genomes_project 4 55503879 55567343 - Tmem245 protein_coding processed_transcript MGP_C3HHeJ_T0065455.1 MGP_C3HHeJ_G0028014.1 mouse_genomes_project 4 55503879 55551583 - MGP_C3HHeJ_P0065455 Tmem245 protein_coding protein_coding MGP_C3HHeJ_T0065456.1 MGP_C3HHeJ_G0028014.1 mouse_genomes_project 4 55504250 55579928 - MGP_C3HHeJ_P0065456 Tmem245 protein_coding protein_coding MGP_C3HHeJ_T0065457.1 MGP_C3HHeJ_G0028014.1 mouse_genomes_project 4 55509668 55579941 - Tmem245 protein_coding processed_transcript MGP_C3HHeJ_T0007948.1 MGP_C3HHeJ_G0006484.1 mouse_genomes_project 4 156172592 156173873 + Gm13115 lincRNA lincRNA MGP_C3HHeJ_T0014566.1 MGP_C3HHeJ_G0012670.1 mouse_genomes_project 4 119297217 119297712 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099392.1 MGP_C3HHeJ_G0037586.1 mouse_genomes_project 4 129700773 129700913 + Gm24621 snRNA snRNA MGP_C3HHeJ_T0065934.1 MGP_C3HHeJ_G0028127.1 mouse_genomes_project 4 88444891 88445938 + MGP_C3HHeJ_P0065934 protein_coding protein_coding MGP_C3HHeJ_T0014372.1 MGP_C3HHeJ_G0012476.1 mouse_genomes_project 4 47088227 47088592 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017822.1 MGP_C3HHeJ_G0015305.1 mouse_genomes_project 4 42306639 42324900 + Gm12503 processed_transcript processed_transcript MGP_C3HHeJ_T0068204.1 MGP_C3HHeJ_G0028635.1 mouse_genomes_project 4 135567156 135573805 + MGP_C3HHeJ_P0068204 Syf2 protein_coding protein_coding MGP_C3HHeJ_T0068205.1 MGP_C3HHeJ_G0028635.1 mouse_genomes_project 4 135567160 135571318 + Syf2 protein_coding retained_intron MGP_C3HHeJ_T0068206.1 MGP_C3HHeJ_G0028635.1 mouse_genomes_project 4 135567268 135572347 + Syf2 protein_coding retained_intron MGP_C3HHeJ_T0067255.1 MGP_C3HHeJ_G0028427.1 mouse_genomes_project 4 122884548 122885636 + MGP_C3HHeJ_P0067255 Mycl protein_coding protein_coding MGP_C3HHeJ_T0067256.1 MGP_C3HHeJ_G0028427.1 mouse_genomes_project 4 122884840 122891413 + MGP_C3HHeJ_P0067256 Mycl protein_coding protein_coding MGP_C3HHeJ_T0067257.1 MGP_C3HHeJ_G0028427.1 mouse_genomes_project 4 122884995 122891413 + MGP_C3HHeJ_P0067257 Mycl protein_coding protein_coding MGP_C3HHeJ_T0067258.1 MGP_C3HHeJ_G0028427.1 mouse_genomes_project 4 122887807 122889395 + Mycl protein_coding processed_transcript MGP_C3HHeJ_T0067259.1 MGP_C3HHeJ_G0028427.1 mouse_genomes_project 4 122888266 122889445 + Mycl protein_coding processed_transcript MGP_C3HHeJ_T0014468.1 MGP_C3HHeJ_G0012572.1 mouse_genomes_project 4 86362876 86364968 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069175.1 MGP_C3HHeJ_G0028877.1 mouse_genomes_project 4 154367625 154465747 + MGP_C3HHeJ_P0069175 Acot7 protein_coding protein_coding MGP_C3HHeJ_T0069176.1 MGP_C3HHeJ_G0028877.1 mouse_genomes_project 4 154375256 154409684 + Acot7 protein_coding processed_transcript MGP_C3HHeJ_T0069177.1 MGP_C3HHeJ_G0028877.1 mouse_genomes_project 4 154375625 154465750 + MGP_C3HHeJ_P0069177 Acot7 protein_coding protein_coding MGP_C3HHeJ_T0069178.1 MGP_C3HHeJ_G0028877.1 mouse_genomes_project 4 154375697 154465742 + MGP_C3HHeJ_P0069178 Acot7 protein_coding protein_coding MGP_C3HHeJ_T0069179.1 MGP_C3HHeJ_G0028877.1 mouse_genomes_project 4 154390301 154465742 + MGP_C3HHeJ_P0069179 Acot7 protein_coding protein_coding MGP_C3HHeJ_T0069180.1 MGP_C3HHeJ_G0028877.1 mouse_genomes_project 4 154390359 154409764 + Acot7 protein_coding processed_transcript MGP_C3HHeJ_T0014386.1 MGP_C3HHeJ_G0012490.1 mouse_genomes_project 4 51443852 51445938 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068587.1 MGP_C3HHeJ_G0028725.1 mouse_genomes_project 4 141831320 141846564 - MGP_C3HHeJ_P0068587 Padi6 protein_coding protein_coding MGP_C3HHeJ_T0068588.1 MGP_C3HHeJ_G0028725.1 mouse_genomes_project 4 141836241 141836959 - Padi6 protein_coding processed_transcript MGP_C3HHeJ_T0068589.1 MGP_C3HHeJ_G0028725.1 mouse_genomes_project 4 141839607 141845554 - MGP_C3HHeJ_P0068589 Padi6 protein_coding protein_coding MGP_C3HHeJ_T0067010.1 MGP_C3HHeJ_G0028358.1 mouse_genomes_project 4 118430805 118637751 - MGP_C3HHeJ_P0067010 St3gal3 protein_coding protein_coding MGP_C3HHeJ_T0067011.1 MGP_C3HHeJ_G0028358.1 mouse_genomes_project 4 118430809 118637775 - MGP_C3HHeJ_P0067011 St3gal3 protein_coding protein_coding MGP_C3HHeJ_T0067012.1 MGP_C3HHeJ_G0028358.1 mouse_genomes_project 4 118430811 118637743 - MGP_C3HHeJ_P0067012 St3gal3 protein_coding protein_coding MGP_C3HHeJ_T0067013.1 MGP_C3HHeJ_G0028358.1 mouse_genomes_project 4 118438924 118530584 - MGP_C3HHeJ_P0067013 St3gal3 protein_coding protein_coding MGP_C3HHeJ_T0067014.1 MGP_C3HHeJ_G0028358.1 mouse_genomes_project 4 118439016 118469127 - MGP_C3HHeJ_P0067014 St3gal3 protein_coding protein_coding MGP_C3HHeJ_T0004358.1 MGP_C3HHeJ_G0003794.1 mouse_genomes_project 4 29995532 30007649 - Bach2os antisense antisense MGP_C3HHeJ_T0004359.1 MGP_C3HHeJ_G0003794.1 mouse_genomes_project 4 29998982 30007604 - Bach2os antisense antisense MGP_C3HHeJ_T0004360.1 MGP_C3HHeJ_G0003794.1 mouse_genomes_project 4 30001524 30007695 - Bach2os antisense antisense MGP_C3HHeJ_T0007848.1 MGP_C3HHeJ_G0006410.1 mouse_genomes_project 4 116562424 116563905 + Gm12951 lincRNA lincRNA MGP_C3HHeJ_T0014423.1 MGP_C3HHeJ_G0012527.1 mouse_genomes_project 4 69012544 69013655 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064243.1 MGP_C3HHeJ_G0027734.1 mouse_genomes_project 4 2922402 2932422 - MGP_C3HHeJ_P0064243 Cyp7a1 protein_coding protein_coding MGP_C3HHeJ_T0064244.1 MGP_C3HHeJ_G0027734.1 mouse_genomes_project 4 2929595 2932424 - Cyp7a1 protein_coding processed_transcript MGP_C3HHeJ_T0007941.1 MGP_C3HHeJ_G0006477.1 mouse_genomes_project 4 152112693 152120661 + Gm13067 lincRNA lincRNA MGP_C3HHeJ_T0064194.1 MGP_C3HHeJ_G0027722.1 mouse_genomes_project 4 197162 237532 + MGP_C3HHeJ_P0064194 Tgs1 protein_coding protein_coding MGP_C3HHeJ_T0064195.1 MGP_C3HHeJ_G0027722.1 mouse_genomes_project 4 197237 206216 + Tgs1 protein_coding retained_intron MGP_C3HHeJ_T0064196.1 MGP_C3HHeJ_G0027722.1 mouse_genomes_project 4 215878 220978 + Tgs1 protein_coding processed_transcript MGP_C3HHeJ_T0064197.1 MGP_C3HHeJ_G0027722.1 mouse_genomes_project 4 220925 224352 + Tgs1 protein_coding retained_intron MGP_C3HHeJ_T0064198.1 MGP_C3HHeJ_G0027722.1 mouse_genomes_project 4 227438 236197 + Tgs1 protein_coding retained_intron MGP_C3HHeJ_T0098474.1 MGP_C3HHeJ_G0036679.1 mouse_genomes_project 4 100029860 100031081 + Gm12701 sense_intronic sense_intronic MGP_C3HHeJ_T0014605.1 MGP_C3HHeJ_G0012709.1 mouse_genomes_project 4 132498719 132499127 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014435.1 MGP_C3HHeJ_G0012539.1 mouse_genomes_project 4 73780513 73781166 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098477.1 MGP_C3HHeJ_G0036682.1 mouse_genomes_project 4 136122402 136122992 - Gm15979 sense_intronic sense_intronic MGP_C3HHeJ_T0065094.1 MGP_C3HHeJ_G0027925.1 mouse_genomes_project 4 42031447 42032404 - MGP_C3HHeJ_P0065094 Olfr157 protein_coding protein_coding MGP_C3HHeJ_T0066081.1 MGP_C3HHeJ_G0028169.1 mouse_genomes_project 4 98682176 98687509 - MGP_C3HHeJ_P0066081 I0C0044D17Rik protein_coding protein_coding MGP_C3HHeJ_T0066082.1 MGP_C3HHeJ_G0028169.1 mouse_genomes_project 4 98683514 98684024 - MGP_C3HHeJ_P0066082 I0C0044D17Rik protein_coding protein_coding MGP_C3HHeJ_T0100611.1 MGP_C3HHeJ_G0038805.1 mouse_genomes_project 4 31201765 31201890 - Gm24341 snoRNA snoRNA MGP_C3HHeJ_T0068510.1 MGP_C3HHeJ_G0028708.1 mouse_genomes_project 4 140063316 140073936 - MGP_C3HHeJ_P0068510 Nbl1 protein_coding protein_coding MGP_C3HHeJ_T0068511.1 MGP_C3HHeJ_G0028708.1 mouse_genomes_project 4 140064239 140073048 - Nbl1 protein_coding processed_transcript MGP_C3HHeJ_T0068512.1 MGP_C3HHeJ_G0028708.1 mouse_genomes_project 4 140073017 140073911 - Nbl1 protein_coding processed_transcript MGP_C3HHeJ_T0014622.1 MGP_C3HHeJ_G0012726.1 mouse_genomes_project 4 136458990 136459468 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014325.1 MGP_C3HHeJ_G0012429.1 mouse_genomes_project 4 29631178 29632243 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014551.1 MGP_C3HHeJ_G0012655.1 mouse_genomes_project 4 116451504 116451801 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069538.1 MGP_C3HHeJ_G0028941.1 mouse_genomes_project 4 158287508 158292580 + MGP_C3HHeJ_P0069538 Ube2j2 protein_coding protein_coding MGP_C3HHeJ_T0069539.1 MGP_C3HHeJ_G0028941.1 mouse_genomes_project 4 158287511 158294980 + Ube2j2 protein_coding processed_transcript MGP_C3HHeJ_T0069540.1 MGP_C3HHeJ_G0028941.1 mouse_genomes_project 4 158287557 158303865 + MGP_C3HHeJ_P0069540 Ube2j2 protein_coding protein_coding MGP_C3HHeJ_T0069541.1 MGP_C3HHeJ_G0028941.1 mouse_genomes_project 4 158287647 158295144 + Ube2j2 protein_coding retained_intron MGP_C3HHeJ_T0069542.1 MGP_C3HHeJ_G0028941.1 mouse_genomes_project 4 158292475 158303832 + MGP_C3HHeJ_P0069542 Ube2j2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069543.1 MGP_C3HHeJ_G0028941.1 mouse_genomes_project 4 158301612 158302863 + Ube2j2 protein_coding retained_intron MGP_C3HHeJ_T0069544.1 MGP_C3HHeJ_G0028941.1 mouse_genomes_project 4 158302472 158304646 + Ube2j2 protein_coding processed_transcript MGP_C3HHeJ_T0065567.1 MGP_C3HHeJ_G0028045.1 mouse_genomes_project 4 61076851 61095752 - MGP_C3HHeJ_P0065567 Zfp37 protein_coding unknown_likely_coding MGP_C3HHeJ_T0065568.1 MGP_C3HHeJ_G0028045.1 mouse_genomes_project 4 61076851 61095752 - MGP_C3HHeJ_P0065568 Zfp37 protein_coding unknown_likely_coding MGP_C3HHeJ_T0065569.1 MGP_C3HHeJ_G0028045.1 mouse_genomes_project 4 61076855 61095752 - MGP_C3HHeJ_P0065569 Zfp37 protein_coding protein_coding MGP_C3HHeJ_T0065570.1 MGP_C3HHeJ_G0028045.1 mouse_genomes_project 4 61079853 61095508 - Zfp37 protein_coding processed_transcript MGP_C3HHeJ_T0065571.1 MGP_C3HHeJ_G0028045.1 mouse_genomes_project 4 61079904 61095195 - Zfp37 protein_coding processed_transcript MGP_C3HHeJ_T0100652.1 MGP_C3HHeJ_G0038846.1 mouse_genomes_project 4 94234455 94234556 + Gm22804 snoRNA snoRNA MGP_C3HHeJ_T0069415.1 MGP_C3HHeJ_G0028917.1 mouse_genomes_project 4 157815980 157890148 + MGP_C3HHeJ_P0069415 Gnb1 protein_coding protein_coding MGP_C3HHeJ_T0069416.1 MGP_C3HHeJ_G0028917.1 mouse_genomes_project 4 157815983 157890148 + MGP_C3HHeJ_P0069416 Gnb1 protein_coding protein_coding MGP_C3HHeJ_T0069417.1 MGP_C3HHeJ_G0028917.1 mouse_genomes_project 4 157815989 157890148 + MGP_C3HHeJ_P0069417 Gnb1 protein_coding protein_coding MGP_C3HHeJ_T0069418.1 MGP_C3HHeJ_G0028917.1 mouse_genomes_project 4 157817530 157872555 + MGP_C3HHeJ_P0069418 Gnb1 protein_coding protein_coding MGP_C3HHeJ_T0069419.1 MGP_C3HHeJ_G0028917.1 mouse_genomes_project 4 157851334 157886049 + MGP_C3HHeJ_P0069419 Gnb1 protein_coding protein_coding MGP_C3HHeJ_T0069420.1 MGP_C3HHeJ_G0028917.1 mouse_genomes_project 4 157851508 157870714 + Gnb1 protein_coding retained_intron MGP_C3HHeJ_T0069421.1 MGP_C3HHeJ_G0028917.1 mouse_genomes_project 4 157856474 157890146 + MGP_C3HHeJ_P0069421 Gnb1 protein_coding protein_coding MGP_C3HHeJ_T0069422.1 MGP_C3HHeJ_G0028917.1 mouse_genomes_project 4 157872395 157886118 + Gnb1 protein_coding retained_intron MGP_C3HHeJ_T0069423.1 MGP_C3HHeJ_G0028917.1 mouse_genomes_project 4 157884136 157888566 + Gnb1 protein_coding retained_intron MGP_C3HHeJ_T0066208.1 MGP_C3HHeJ_G0028198.1 mouse_genomes_project 4 102988017 103013180 + MGP_C3HHeJ_P0066208 Tctex1d1 protein_coding protein_coding MGP_C3HHeJ_T0066209.1 MGP_C3HHeJ_G0028198.1 mouse_genomes_project 4 102994104 103013410 + MGP_C3HHeJ_P0066209 Tctex1d1 protein_coding protein_coding MGP_C3HHeJ_T0066210.1 MGP_C3HHeJ_G0028198.1 mouse_genomes_project 4 102996327 103014431 + MGP_C3HHeJ_P0066210 Tctex1d1 protein_coding protein_coding MGP_C3HHeJ_T0066211.1 MGP_C3HHeJ_G0028198.1 mouse_genomes_project 4 102999559 103000626 + Tctex1d1 protein_coding processed_transcript MGP_C3HHeJ_T0068611.1 MGP_C3HHeJ_G0028732.1 mouse_genomes_project 4 142125587 142130984 + MGP_C3HHeJ_P0068611 Mfap2 protein_coding protein_coding MGP_C3HHeJ_T0068612.1 MGP_C3HHeJ_G0028732.1 mouse_genomes_project 4 142125806 142130182 + Mfap2 protein_coding processed_transcript MGP_C3HHeJ_T0068613.1 MGP_C3HHeJ_G0028732.1 mouse_genomes_project 4 142125813 142131154 + MGP_C3HHeJ_P0068613 Mfap2 protein_coding protein_coding MGP_C3HHeJ_T0068140.1 MGP_C3HHeJ_G0028618.1 mouse_genomes_project 4 134864334 134876599 - MGP_C3HHeJ_P0068140 Pdik1l protein_coding protein_coding MGP_C3HHeJ_T0068141.1 MGP_C3HHeJ_G0028618.1 mouse_genomes_project 4 134864334 134877255 - MGP_C3HHeJ_P0068141 Pdik1l protein_coding protein_coding MGP_C3HHeJ_T0068142.1 MGP_C3HHeJ_G0028618.1 mouse_genomes_project 4 134864335 134876613 - MGP_C3HHeJ_P0068142 Pdik1l protein_coding protein_coding MGP_C3HHeJ_T0068143.1 MGP_C3HHeJ_G0028618.1 mouse_genomes_project 4 134867866 134876585 - MGP_C3HHeJ_P0068143 Pdik1l protein_coding protein_coding MGP_C3HHeJ_T0068144.1 MGP_C3HHeJ_G0028618.1 mouse_genomes_project 4 134868680 134876610 - MGP_C3HHeJ_P0068144 Pdik1l protein_coding protein_coding MGP_C3HHeJ_T0068145.1 MGP_C3HHeJ_G0028618.1 mouse_genomes_project 4 134872930 134876585 - Pdik1l protein_coding processed_transcript MGP_C3HHeJ_T0066105.1 MGP_C3HHeJ_G0028172.1 mouse_genomes_project 4 98913724 98920838 + MGP_C3HHeJ_P0066105 Angptl3 protein_coding protein_coding MGP_C3HHeJ_T0066106.1 MGP_C3HHeJ_G0028172.1 mouse_genomes_project 4 98915949 98920732 + Angptl3 protein_coding processed_transcript MGP_C3HHeJ_T0066107.1 MGP_C3HHeJ_G0028172.1 mouse_genomes_project 4 98915973 98928884 + Angptl3 protein_coding processed_transcript MGP_C3HHeJ_T0066739.1 MGP_C3HHeJ_G0028307.1 mouse_genomes_project 4 116260181 116263727 + MGP_C3HHeJ_P0066739 Kncn protein_coding protein_coding MGP_C3HHeJ_T0066740.1 MGP_C3HHeJ_G0028307.1 mouse_genomes_project 4 116261648 116265289 + Kncn protein_coding processed_transcript MGP_C3HHeJ_T0065768.1 MGP_C3HHeJ_G0028094.1 mouse_genomes_project 4 81629255 81853637 - MGP_C3HHeJ_P0065768 Nfib protein_coding protein_coding MGP_C3HHeJ_T0065769.1 MGP_C3HHeJ_G0028094.1 mouse_genomes_project 4 81659345 81854187 - Nfib protein_coding retained_intron MGP_C3HHeJ_T0065770.1 MGP_C3HHeJ_G0028094.1 mouse_genomes_project 4 81661114 81854187 - Nfib protein_coding retained_intron MGP_C3HHeJ_T0065771.1 MGP_C3HHeJ_G0028094.1 mouse_genomes_project 4 81685056 81854641 - Nfib protein_coding retained_intron MGP_C3HHeJ_T0065772.1 MGP_C3HHeJ_G0028094.1 mouse_genomes_project 4 81844872 81854656 - Nfib protein_coding retained_intron MGP_C3HHeJ_T0065773.1 MGP_C3HHeJ_G0028094.1 mouse_genomes_project 4 81847209 82082398 - MGP_C3HHeJ_P0065773 Nfib protein_coding protein_coding MGP_C3HHeJ_T0065774.1 MGP_C3HHeJ_G0028094.1 mouse_genomes_project 4 81847432 81848205 - Nfib protein_coding processed_transcript MGP_C3HHeJ_T0014650.1 MGP_C3HHeJ_G0012754.1 mouse_genomes_project 4 150540141 150540962 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001372.1 MGP_C3HHeJ_G0001303.1 mouse_genomes_project 4 9450345 9527068 + TEC TEC MGP_C3HHeJ_T0067535.1 MGP_C3HHeJ_G0028494.1 mouse_genomes_project 4 127490827 127493825 - MGP_C3HHeJ_P0067535 Gjb4 protein_coding protein_coding MGP_C3HHeJ_T0067536.1 MGP_C3HHeJ_G0028494.1 mouse_genomes_project 4 127490827 127493825 - MGP_C3HHeJ_P0067536 Gjb4 protein_coding protein_coding MGP_C3HHeJ_T0066690.1 MGP_C3HHeJ_G0028292.1 mouse_genomes_project 4 115382153 115407413 - MGP_C3HHeJ_P0066690 Cyp4x1 protein_coding protein_coding MGP_C3HHeJ_T0064701.1 MGP_C3HHeJ_G0027843.1 mouse_genomes_project 4 38595779 38617196 - MGP_C3HHeJ_P0064701 Aptx protein_coding protein_coding MGP_C3HHeJ_T0064702.1 MGP_C3HHeJ_G0027843.1 mouse_genomes_project 4 38595779 38617476 - MGP_C3HHeJ_P0064702 Aptx protein_coding protein_coding MGP_C3HHeJ_T0064703.1 MGP_C3HHeJ_G0027843.1 mouse_genomes_project 4 38598337 38617444 - MGP_C3HHeJ_P0064703 Aptx protein_coding protein_coding MGP_C3HHeJ_T0064704.1 MGP_C3HHeJ_G0027843.1 mouse_genomes_project 4 38599454 38617469 - MGP_C3HHeJ_P0064704 Aptx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064705.1 MGP_C3HHeJ_G0027843.1 mouse_genomes_project 4 38604261 38608789 - Aptx protein_coding processed_transcript MGP_C3HHeJ_T0064706.1 MGP_C3HHeJ_G0027843.1 mouse_genomes_project 4 38609301 38616998 - MGP_C3HHeJ_P0064706 Aptx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067313.1 MGP_C3HHeJ_G0028441.1 mouse_genomes_project 4 123739014 123768758 + Rhbdl2 protein_coding processed_transcript MGP_C3HHeJ_T0067314.1 MGP_C3HHeJ_G0028441.1 mouse_genomes_project 4 123739015 123795061 + MGP_C3HHeJ_P0067314 Rhbdl2 protein_coding protein_coding MGP_C3HHeJ_T0067315.1 MGP_C3HHeJ_G0028441.1 mouse_genomes_project 4 123750827 123767401 + Rhbdl2 protein_coding processed_transcript MGP_C3HHeJ_T0067316.1 MGP_C3HHeJ_G0028441.1 mouse_genomes_project 4 123767173 123795061 + MGP_C3HHeJ_P0067316 Rhbdl2 protein_coding protein_coding MGP_C3HHeJ_T0067317.1 MGP_C3HHeJ_G0028441.1 mouse_genomes_project 4 123770674 123773643 + Rhbdl2 protein_coding processed_transcript MGP_C3HHeJ_T0067633.1 MGP_C3HHeJ_G0028515.1 mouse_genomes_project 4 129535212 129565519 - MGP_C3HHeJ_P0067633 Rbbp4 protein_coding protein_coding MGP_C3HHeJ_T0067634.1 MGP_C3HHeJ_G0028515.1 mouse_genomes_project 4 129537628 129564793 - Rbbp4 protein_coding processed_transcript MGP_C3HHeJ_T0067635.1 MGP_C3HHeJ_G0028515.1 mouse_genomes_project 4 129553466 129565398 - Rbbp4 protein_coding retained_intron MGP_C3HHeJ_T0067636.1 MGP_C3HHeJ_G0028515.1 mouse_genomes_project 4 129557285 129565232 - MGP_C3HHeJ_P0067636 Rbbp4 protein_coding protein_coding MGP_C3HHeJ_T0064202.1 MGP_C3HHeJ_G0027724.1 mouse_genomes_project 4 491013 496238 - MGP_C3HHeJ_P0064202 Rps20 protein_coding protein_coding MGP_C3HHeJ_T0064203.1 MGP_C3HHeJ_G0027724.1 mouse_genomes_project 4 494163 495806 - Rps20 protein_coding retained_intron MGP_C3HHeJ_T0064204.1 MGP_C3HHeJ_G0027724.1 mouse_genomes_project 4 494166 496061 - Rps20 protein_coding retained_intron MGP_C3HHeJ_T0064205.1 MGP_C3HHeJ_G0027724.1 mouse_genomes_project 4 494194 496059 - MGP_C3HHeJ_P0064205 Rps20 protein_coding unknown_likely_coding MGP_C3HHeJ_T0017810.1 MGP_C3HHeJ_G0015298.1 mouse_genomes_project 4 22102725 22108552 - C230012O17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017811.1 MGP_C3HHeJ_G0015298.1 mouse_genomes_project 4 22104265 22109019 - C230012O17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017812.1 MGP_C3HHeJ_G0015298.1 mouse_genomes_project 4 22108307 22109385 - C230012O17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0007857.1 MGP_C3HHeJ_G0006419.1 mouse_genomes_project 4 124316703 124322842 - 4933435F18Rik lincRNA lincRNA MGP_C3HHeJ_T0007858.1 MGP_C3HHeJ_G0006419.1 mouse_genomes_project 4 124321739 124322801 - 4933435F18Rik lincRNA lincRNA MGP_C3HHeJ_T0014447.1 MGP_C3HHeJ_G0012551.1 mouse_genomes_project 4 75984853 75985090 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068156.1 MGP_C3HHeJ_G0028623.1 mouse_genomes_project 4 134988681 135012334 + Pafah2 protein_coding processed_transcript MGP_C3HHeJ_T0068157.1 MGP_C3HHeJ_G0028623.1 mouse_genomes_project 4 134988718 135006091 + Pafah2 protein_coding processed_transcript MGP_C3HHeJ_T0068158.1 MGP_C3HHeJ_G0028623.1 mouse_genomes_project 4 134989593 135005288 + Pafah2 protein_coding processed_transcript MGP_C3HHeJ_T0068159.1 MGP_C3HHeJ_G0028623.1 mouse_genomes_project 4 134989827 135019753 + MGP_C3HHeJ_P0068159 Pafah2 protein_coding protein_coding MGP_C3HHeJ_T0068160.1 MGP_C3HHeJ_G0028623.1 mouse_genomes_project 4 134995928 134998082 + MGP_C3HHeJ_P0068160 Pafah2 protein_coding protein_coding MGP_C3HHeJ_T0068161.1 MGP_C3HHeJ_G0028623.1 mouse_genomes_project 4 134995986 135016779 + Pafah2 protein_coding processed_transcript MGP_C3HHeJ_T0069144.1 MGP_C3HHeJ_G0028873.1 mouse_genomes_project 4 154268198 154299969 + MGP_C3HHeJ_P0069144 Plekhg5 protein_coding protein_coding MGP_C3HHeJ_T0069145.1 MGP_C3HHeJ_G0028873.1 mouse_genomes_project 4 154281297 154299973 + MGP_C3HHeJ_P0069145 Plekhg5 protein_coding protein_coding MGP_C3HHeJ_T0069146.1 MGP_C3HHeJ_G0028873.1 mouse_genomes_project 4 154281297 154299963 + MGP_C3HHeJ_P0069146 Plekhg5 protein_coding protein_coding MGP_C3HHeJ_T0069147.1 MGP_C3HHeJ_G0028873.1 mouse_genomes_project 4 154289072 154290766 + Plekhg5 protein_coding retained_intron MGP_C3HHeJ_T0069148.1 MGP_C3HHeJ_G0028873.1 mouse_genomes_project 4 154292208 154299967 + Plekhg5 protein_coding retained_intron MGP_C3HHeJ_T0069149.1 MGP_C3HHeJ_G0028873.1 mouse_genomes_project 4 154292301 154292782 + Plekhg5 protein_coding retained_intron MGP_C3HHeJ_T0014621.1 MGP_C3HHeJ_G0012725.1 mouse_genomes_project 4 136095609 136096077 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068453.1 MGP_C3HHeJ_G0028688.1 mouse_genomes_project 4 139157976 139170989 + MGP_C3HHeJ_P0068453 Sh2d5 protein_coding protein_coding MGP_C3HHeJ_T0068454.1 MGP_C3HHeJ_G0028688.1 mouse_genomes_project 4 139157986 139166949 + MGP_C3HHeJ_P0068454 Sh2d5 protein_coding protein_coding MGP_C3HHeJ_T0068455.1 MGP_C3HHeJ_G0028688.1 mouse_genomes_project 4 139159214 139165359 + Sh2d5 protein_coding processed_transcript MGP_C3HHeJ_T0068457.1 MGP_C3HHeJ_G0028688.1 mouse_genomes_project 4 139159255 139170989 + MGP_C3HHeJ_P0068457 Sh2d5 protein_coding protein_coding MGP_C3HHeJ_T0068458.1 MGP_C3HHeJ_G0028688.1 mouse_genomes_project 4 139166405 139168768 + Sh2d5 protein_coding retained_intron MGP_C3HHeJ_T0014417.1 MGP_C3HHeJ_G0012521.1 mouse_genomes_project 4 65754007 65754482 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068712.1 MGP_C3HHeJ_G0028756.1 mouse_genomes_project 4 142967036 142971525 + Casp9 protein_coding processed_transcript MGP_C3HHeJ_T0068713.1 MGP_C3HHeJ_G0028756.1 mouse_genomes_project 4 142967134 142978107 + MGP_C3HHeJ_P0068713 Casp9 protein_coding protein_coding MGP_C3HHeJ_T0068714.1 MGP_C3HHeJ_G0028756.1 mouse_genomes_project 4 142967268 142970012 + Casp9 protein_coding processed_transcript MGP_C3HHeJ_T0068715.1 MGP_C3HHeJ_G0028756.1 mouse_genomes_project 4 142967279 142988625 + MGP_C3HHeJ_P0068715 Casp9 protein_coding protein_coding MGP_C3HHeJ_T0068716.1 MGP_C3HHeJ_G0028756.1 mouse_genomes_project 4 142987495 142988655 + Casp9 protein_coding processed_transcript MGP_C3HHeJ_T0014327.1 MGP_C3HHeJ_G0012431.1 mouse_genomes_project 4 30097944 30098104 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010510.1 MGP_C3HHeJ_G0008643.1 mouse_genomes_project 4 57113171 57113258 - Mir3095 miRNA miRNA MGP_C3HHeJ_T0014631.1 MGP_C3HHeJ_G0012735.1 mouse_genomes_project 4 138216722 138217081 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064620.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32112933 32158941 - MGP_C3HHeJ_P0064620 Orc3 protein_coding protein_coding MGP_C3HHeJ_T0064621.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32112933 32158910 - MGP_C3HHeJ_P0064621 Orc3 protein_coding protein_coding MGP_C3HHeJ_T0064622.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32113702 32141881 - Orc3 protein_coding processed_transcript MGP_C3HHeJ_T0064623.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32114523 32119100 - Orc3 protein_coding processed_transcript MGP_C3HHeJ_T0064624.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32119846 32158908 - Orc3 protein_coding processed_transcript MGP_C3HHeJ_T0064625.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32135532 32138195 - Orc3 protein_coding processed_transcript MGP_C3HHeJ_T0064626.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32136058 32158890 - MGP_C3HHeJ_P0064626 Orc3 protein_coding protein_coding MGP_C3HHeJ_T0064627.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32141831 32158900 - Orc3 protein_coding processed_transcript MGP_C3HHeJ_T0064628.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32141919 32158906 - Orc3 protein_coding processed_transcript MGP_C3HHeJ_T0064629.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32142505 32158901 - Orc3 protein_coding processed_transcript MGP_C3HHeJ_T0014266.1 MGP_C3HHeJ_G0012370.1 mouse_genomes_project 4 13301996 13303216 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010527.1 MGP_C3HHeJ_G0008660.1 mouse_genomes_project 4 118068707 118068781 + Gm25559 miRNA miRNA MGP_C3HHeJ_T0068532.1 MGP_C3HHeJ_G0028712.1 mouse_genomes_project 4 140302314 140310108 + MGP_C3HHeJ_P0068532 Akr7a5 protein_coding protein_coding MGP_C3HHeJ_T0068533.1 MGP_C3HHeJ_G0028712.1 mouse_genomes_project 4 140308261 140309090 + Akr7a5 protein_coding processed_transcript MGP_C3HHeJ_T0014310.1 MGP_C3HHeJ_G0012414.1 mouse_genomes_project 4 25309687 25310710 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066697.1 MGP_C3HHeJ_G0028298.1 mouse_genomes_project 4 115908491 115912345 + MGP_C3HHeJ_P0066697 protein_coding protein_coding MGP_C3HHeJ_T0066698.1 MGP_C3HHeJ_G0028298.1 mouse_genomes_project 4 115908491 115968702 + MGP_C3HHeJ_P0066698 protein_coding protein_coding MGP_C3HHeJ_T0066701.1 MGP_C3HHeJ_G0028298.1 mouse_genomes_project 4 115908526 115918821 + MGP_C3HHeJ_P0066701 protein_coding protein_coding MGP_C3HHeJ_T0066703.1 MGP_C3HHeJ_G0028298.1 mouse_genomes_project 4 115908540 115968700 + MGP_C3HHeJ_P0066703 protein_coding protein_coding MGP_C3HHeJ_T0099399.1 MGP_C3HHeJ_G0037593.1 mouse_genomes_project 4 134427974 134428074 - Gm22523 snRNA snRNA MGP_C3HHeJ_T0100634.1 MGP_C3HHeJ_G0038828.1 mouse_genomes_project 4 55540892 55541018 + Gm22300 snoRNA snoRNA MGP_C3HHeJ_T0007911.1 MGP_C3HHeJ_G0006451.1 mouse_genomes_project 4 136328282 136331826 + 1700029M20Rik lincRNA lincRNA MGP_C3HHeJ_T0007912.1 MGP_C3HHeJ_G0006451.1 mouse_genomes_project 4 136328401 136330113 + 1700029M20Rik lincRNA lincRNA MGP_C3HHeJ_T0007913.1 MGP_C3HHeJ_G0006451.1 mouse_genomes_project 4 136328445 136330113 + 1700029M20Rik lincRNA lincRNA MGP_C3HHeJ_T0007914.1 MGP_C3HHeJ_G0006451.1 mouse_genomes_project 4 136328880 136329613 + 1700029M20Rik lincRNA lincRNA MGP_C3HHeJ_T0066389.1 MGP_C3HHeJ_G0028235.1 mouse_genomes_project 4 107486558 107536537 + MGP_C3HHeJ_P0066389 Ndc1 protein_coding protein_coding MGP_C3HHeJ_T0066390.1 MGP_C3HHeJ_G0028235.1 mouse_genomes_project 4 107486654 107534524 + MGP_C3HHeJ_P0066390 Ndc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066391.1 MGP_C3HHeJ_G0028235.1 mouse_genomes_project 4 107486689 107536514 + MGP_C3HHeJ_P0066391 Ndc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066392.1 MGP_C3HHeJ_G0028235.1 mouse_genomes_project 4 107486826 107531341 + MGP_C3HHeJ_P0066392 Ndc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066393.1 MGP_C3HHeJ_G0028235.1 mouse_genomes_project 4 107501558 107507247 + Ndc1 protein_coding processed_transcript MGP_C3HHeJ_T0066394.1 MGP_C3HHeJ_G0028235.1 mouse_genomes_project 4 107501935 107510754 + Ndc1 protein_coding retained_intron MGP_C3HHeJ_T0067591.1 MGP_C3HHeJ_G0028508.1 mouse_genomes_project 4 129315389 129321470 + MGP_C3HHeJ_P0067591 Tmem54 protein_coding protein_coding MGP_C3HHeJ_T0067592.1 MGP_C3HHeJ_G0028508.1 mouse_genomes_project 4 129315415 129321470 + MGP_C3HHeJ_P0067592 Tmem54 protein_coding protein_coding MGP_C3HHeJ_T0067593.1 MGP_C3HHeJ_G0028508.1 mouse_genomes_project 4 129315442 129321361 + MGP_C3HHeJ_P0067593 Tmem54 protein_coding protein_coding MGP_C3HHeJ_T0067594.1 MGP_C3HHeJ_G0028508.1 mouse_genomes_project 4 129316710 129320388 + MGP_C3HHeJ_P0067594 Tmem54 protein_coding protein_coding MGP_C3HHeJ_T0014550.1 MGP_C3HHeJ_G0012654.1 mouse_genomes_project 4 116069050 116070099 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010552.1 MGP_C3HHeJ_G0008685.1 mouse_genomes_project 4 136208865 136208994 - Gm25317 miRNA miRNA MGP_C3HHeJ_T0097906.1 MGP_C3HHeJ_G0036118.1 mouse_genomes_project 4 130136907 130138550 + pseudogene pseudogene MGP_C3HHeJ_T0064696.1 MGP_C3HHeJ_G0027840.1 mouse_genomes_project 4 38168283 38178534 - MGP_C3HHeJ_P0064696 Topors protein_coding protein_coding MGP_C3HHeJ_T0004480.1 MGP_C3HHeJ_G0003887.1 mouse_genomes_project 4 135977323 135979499 + Gm12984 antisense antisense MGP_C3HHeJ_T0017833.1 MGP_C3HHeJ_G0015312.1 mouse_genomes_project 4 71319054 71333021 + C630043F03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0068032.1 MGP_C3HHeJ_G0028597.1 mouse_genomes_project 4 134139468 134141004 - MGP_C3HHeJ_P0068032 Sfn protein_coding protein_coding MGP_C3HHeJ_T0099367.1 MGP_C3HHeJ_G0037561.1 mouse_genomes_project 4 98218992 98219082 - Gm24960 snRNA snRNA MGP_C3HHeJ_T0068376.1 MGP_C3HHeJ_G0028678.1 mouse_genomes_project 4 138247580 138264256 - MGP_C3HHeJ_P0068376 Cela3b protein_coding protein_coding MGP_C3HHeJ_T0068377.1 MGP_C3HHeJ_G0028678.1 mouse_genomes_project 4 138247589 138249371 - Cela3b protein_coding processed_transcript MGP_C3HHeJ_T0065986.1 MGP_C3HHeJ_G0028149.1 mouse_genomes_project 4 94673087 94712797 - MGP_C3HHeJ_P0065986 Mysm1 protein_coding protein_coding MGP_C3HHeJ_T0065987.1 MGP_C3HHeJ_G0028149.1 mouse_genomes_project 4 94673110 94684319 - Mysm1 protein_coding processed_transcript MGP_C3HHeJ_T0065988.1 MGP_C3HHeJ_G0028149.1 mouse_genomes_project 4 94678106 94684450 - Mysm1 protein_coding processed_transcript MGP_C3HHeJ_T0065989.1 MGP_C3HHeJ_G0028149.1 mouse_genomes_project 4 94695305 94712772 - Mysm1 protein_coding processed_transcript MGP_C3HHeJ_T0065990.1 MGP_C3HHeJ_G0028149.1 mouse_genomes_project 4 94696532 94712739 - Mysm1 protein_coding processed_transcript MGP_C3HHeJ_T0065991.1 MGP_C3HHeJ_G0028149.1 mouse_genomes_project 4 94696572 94701598 - Mysm1 protein_coding processed_transcript MGP_C3HHeJ_T0065992.1 MGP_C3HHeJ_G0028149.1 mouse_genomes_project 4 94696664 94712775 - Mysm1 protein_coding processed_transcript MGP_C3HHeJ_T0065993.1 MGP_C3HHeJ_G0028149.1 mouse_genomes_project 4 94701225 94712750 - Mysm1 protein_coding processed_transcript MGP_C3HHeJ_T0065994.1 MGP_C3HHeJ_G0028149.1 mouse_genomes_project 4 94703391 94712772 - Mysm1 protein_coding processed_transcript MGP_C3HHeJ_T0097907.1 MGP_C3HHeJ_G0036119.1 mouse_genomes_project 4 142693801 142695511 + pseudogene pseudogene MGP_C3HHeJ_T0007859.1 MGP_C3HHeJ_G0006420.1 mouse_genomes_project 4 124401154 124441834 - 1700057H15Rik lincRNA lincRNA MGP_C3HHeJ_T0007860.1 MGP_C3HHeJ_G0006420.1 mouse_genomes_project 4 124401154 124405622 - 1700057H15Rik lincRNA lincRNA MGP_C3HHeJ_T0007861.1 MGP_C3HHeJ_G0006420.1 mouse_genomes_project 4 124440440 124476287 - 1700057H15Rik lincRNA lincRNA MGP_C3HHeJ_T0007862.1 MGP_C3HHeJ_G0006420.1 mouse_genomes_project 4 124440773 124441824 - 1700057H15Rik lincRNA lincRNA MGP_C3HHeJ_T0065841.1 MGP_C3HHeJ_G0028103.1 mouse_genomes_project 4 84335131 84590486 + MGP_C3HHeJ_P0065841 Cntln protein_coding protein_coding MGP_C3HHeJ_T0065842.1 MGP_C3HHeJ_G0028103.1 mouse_genomes_project 4 84335226 84408670 + MGP_C3HHeJ_P0065842 Cntln protein_coding protein_coding MGP_C3HHeJ_T0065843.1 MGP_C3HHeJ_G0028103.1 mouse_genomes_project 4 84335287 84590482 + MGP_C3HHeJ_P0065843 Cntln protein_coding protein_coding MGP_C3HHeJ_T0065844.1 MGP_C3HHeJ_G0028103.1 mouse_genomes_project 4 84554003 84590483 + MGP_C3HHeJ_P0065844 Cntln protein_coding protein_coding MGP_C3HHeJ_T0007851.1 MGP_C3HHeJ_G0006413.1 mouse_genomes_project 4 119520480 119521306 - Gm12862 lincRNA lincRNA MGP_C3HHeJ_T0014568.1 MGP_C3HHeJ_G0012672.1 mouse_genomes_project 4 119872140 119873197 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065082.1 MGP_C3HHeJ_G0027919.1 mouse_genomes_project 4 41862917 41879785 + protein_coding processed_transcript MGP_C3HHeJ_T0065083.1 MGP_C3HHeJ_G0027919.1 mouse_genomes_project 4 41862981 41883734 + MGP_C3HHeJ_P0065083 protein_coding protein_coding MGP_C3HHeJ_T0065084.1 MGP_C3HHeJ_G0027919.1 mouse_genomes_project 4 41863215 41878988 + MGP_C3HHeJ_P0065084 protein_coding protein_coding MGP_C3HHeJ_T0065085.1 MGP_C3HHeJ_G0027919.1 mouse_genomes_project 4 41863276 41874664 + protein_coding processed_transcript MGP_C3HHeJ_T0065086.1 MGP_C3HHeJ_G0027919.1 mouse_genomes_project 4 41867811 41879577 + protein_coding processed_transcript MGP_C3HHeJ_T0065087.1 MGP_C3HHeJ_G0027919.1 mouse_genomes_project 4 41883061 41883868 + protein_coding processed_transcript MGP_C3HHeJ_T0004482.1 MGP_C3HHeJ_G0003889.1 mouse_genomes_project 4 136750152 136750560 - Gm24362 antisense antisense MGP_C3HHeJ_T0066699.1 MGP_C3HHeJ_G0028299.1 mouse_genomes_project 4 115908494 115919240 + MGP_C3HHeJ_P0066699 protein_coding protein_coding MGP_C3HHeJ_T0066704.1 MGP_C3HHeJ_G0028299.1 mouse_genomes_project 4 115908553 115918799 + protein_coding processed_transcript MGP_C3HHeJ_T0066282.1 MGP_C3HHeJ_G0028219.1 mouse_genomes_project 4 106723290 106725761 + MGP_C3HHeJ_P0066282 Pars2 protein_coding protein_coding MGP_C3HHeJ_T0066283.1 MGP_C3HHeJ_G0028219.1 mouse_genomes_project 4 106723319 106727502 + MGP_C3HHeJ_P0066283 Pars2 protein_coding protein_coding MGP_C3HHeJ_T0066284.1 MGP_C3HHeJ_G0028219.1 mouse_genomes_project 4 106723324 106725088 + Pars2 protein_coding processed_transcript MGP_C3HHeJ_T0066285.1 MGP_C3HHeJ_G0028219.1 mouse_genomes_project 4 106723327 106727504 + MGP_C3HHeJ_P0066285 Pars2 protein_coding protein_coding MGP_C3HHeJ_T0014640.1 MGP_C3HHeJ_G0012744.1 mouse_genomes_project 4 144722417 144725929 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065901.1 MGP_C3HHeJ_G0028114.1 mouse_genomes_project 4 87382864 87652727 - MGP_C3HHeJ_P0065901 Mllt3 protein_coding protein_coding MGP_C3HHeJ_T0065902.1 MGP_C3HHeJ_G0028114.1 mouse_genomes_project 4 87386635 87418898 - MGP_C3HHeJ_P0065902 Mllt3 protein_coding protein_coding MGP_C3HHeJ_T0065903.1 MGP_C3HHeJ_G0028114.1 mouse_genomes_project 4 87386672 87418869 - MGP_C3HHeJ_P0065903 Mllt3 protein_coding protein_coding MGP_C3HHeJ_T0065904.1 MGP_C3HHeJ_G0028114.1 mouse_genomes_project 4 87404498 87652912 - Mllt3 protein_coding processed_transcript MGP_C3HHeJ_T0065905.1 MGP_C3HHeJ_G0028114.1 mouse_genomes_project 4 87445579 87487687 - Mllt3 protein_coding processed_transcript MGP_C3HHeJ_T0065906.1 MGP_C3HHeJ_G0028114.1 mouse_genomes_project 4 87450217 87651384 - Mllt3 protein_coding retained_intron MGP_C3HHeJ_T0065907.1 MGP_C3HHeJ_G0028114.1 mouse_genomes_project 4 87453882 87651384 - MGP_C3HHeJ_P0065907 Mllt3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067161.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120082396 120123771 + MGP_C3HHeJ_P0067161 Foxj3 protein_coding protein_coding MGP_C3HHeJ_T0067162.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120085053 120180894 + MGP_C3HHeJ_P0067162 Foxj3 protein_coding protein_coding MGP_C3HHeJ_T0067163.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120085077 120138691 + MGP_C3HHeJ_P0067163 Foxj3 protein_coding protein_coding MGP_C3HHeJ_T0067164.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120085080 120180894 + MGP_C3HHeJ_P0067164 Foxj3 protein_coding protein_coding MGP_C3HHeJ_T0067165.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120085084 120151752 + Foxj3 protein_coding retained_intron MGP_C3HHeJ_T0067166.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120085090 120138700 + MGP_C3HHeJ_P0067166 Foxj3 protein_coding protein_coding MGP_C3HHeJ_T0067167.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120085099 120112349 + Foxj3 protein_coding retained_intron MGP_C3HHeJ_T0067168.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120085171 120123798 + MGP_C3HHeJ_P0067168 Foxj3 protein_coding protein_coding MGP_C3HHeJ_T0067169.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120085914 120123899 + MGP_C3HHeJ_P0067169 Foxj3 protein_coding protein_coding MGP_C3HHeJ_T0067170.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120170270 120172341 + Foxj3 protein_coding processed_transcript MGP_C3HHeJ_T0007791.1 MGP_C3HHeJ_G0006366.1 mouse_genomes_project 4 81270789 81272686 - Gm12914 lincRNA lincRNA MGP_C3HHeJ_T0065385.1 MGP_C3HHeJ_G0027994.1 mouse_genomes_project 4 51402196 51403256 - MGP_C3HHeJ_P0065385 Olfr273 protein_coding protein_coding MGP_C3HHeJ_T0065386.1 MGP_C3HHeJ_G0027994.1 mouse_genomes_project 4 51402241 51405149 - MGP_C3HHeJ_P0065386 Olfr273 protein_coding protein_coding MGP_C3HHeJ_T0069330.1 MGP_C3HHeJ_G0028904.1 mouse_genomes_project 4 157220902 157226898 - MGP_C3HHeJ_P0069330 Tnfrsf14 protein_coding protein_coding MGP_C3HHeJ_T0069331.1 MGP_C3HHeJ_G0028904.1 mouse_genomes_project 4 157220902 157226773 - MGP_C3HHeJ_P0069331 Tnfrsf14 protein_coding protein_coding MGP_C3HHeJ_T0069332.1 MGP_C3HHeJ_G0028904.1 mouse_genomes_project 4 157220936 157226742 - MGP_C3HHeJ_P0069332 Tnfrsf14 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069333.1 MGP_C3HHeJ_G0028904.1 mouse_genomes_project 4 157220953 157227248 - MGP_C3HHeJ_P0069333 Tnfrsf14 protein_coding protein_coding MGP_C3HHeJ_T0069334.1 MGP_C3HHeJ_G0028904.1 mouse_genomes_project 4 157223164 157227248 - Tnfrsf14 protein_coding processed_transcript MGP_C3HHeJ_T0069335.1 MGP_C3HHeJ_G0028904.1 mouse_genomes_project 4 157225323 157227259 - Tnfrsf14 protein_coding processed_transcript MGP_C3HHeJ_T0014444.1 MGP_C3HHeJ_G0012548.1 mouse_genomes_project 4 75559610 75560549 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014645.1 MGP_C3HHeJ_G0012749.1 mouse_genomes_project 4 147128637 147129025 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010559.1 MGP_C3HHeJ_G0008692.1 mouse_genomes_project 4 140664024 140664094 + Mir7020 miRNA miRNA MGP_C3HHeJ_T0065298.1 MGP_C3HHeJ_G0027967.1 mouse_genomes_project 4 45717730 45778638 + MGP_C3HHeJ_P0065298 Tgfbr1 protein_coding protein_coding MGP_C3HHeJ_T0065299.1 MGP_C3HHeJ_G0027967.1 mouse_genomes_project 4 45717735 45781435 + MGP_C3HHeJ_P0065299 Tgfbr1 protein_coding protein_coding MGP_C3HHeJ_T0065300.1 MGP_C3HHeJ_G0027967.1 mouse_genomes_project 4 45718021 45725737 + Tgfbr1 protein_coding processed_transcript MGP_C3HHeJ_T0065301.1 MGP_C3HHeJ_G0027967.1 mouse_genomes_project 4 45751850 45777540 + MGP_C3HHeJ_P0065301 Tgfbr1 protein_coding protein_coding MGP_C3HHeJ_T0065102.1 MGP_C3HHeJ_G0027929.1 mouse_genomes_project 4 42192598 42194539 + MGP_C3HHeJ_P0065102 Ccin protein_coding protein_coding MGP_C3HHeJ_T0065996.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95312120 95689491 + MGP_C3HHeJ_P0065996 Fggy protein_coding protein_coding MGP_C3HHeJ_T0065997.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95312124 95603562 + Fggy protein_coding processed_transcript MGP_C3HHeJ_T0065998.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95312132 95689487 + Fggy protein_coding processed_transcript MGP_C3HHeJ_T0065999.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95312133 95350632 + MGP_C3HHeJ_P0065999 Fggy protein_coding protein_coding MGP_C3HHeJ_T0066000.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95333940 95583281 + MGP_C3HHeJ_P0066000 Fggy protein_coding protein_coding MGP_C3HHeJ_T0066001.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95334003 95354029 + Fggy protein_coding processed_transcript MGP_C3HHeJ_T0066002.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95334008 95350638 + MGP_C3HHeJ_P0066002 Fggy protein_coding protein_coding MGP_C3HHeJ_T0066003.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95334013 95531263 + MGP_C3HHeJ_P0066003 Fggy protein_coding protein_coding MGP_C3HHeJ_T0066004.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95340067 95689356 + MGP_C3HHeJ_P0066004 Fggy protein_coding protein_coding MGP_C3HHeJ_T0066005.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95340067 95574070 + MGP_C3HHeJ_P0066005 Fggy protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066006.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95341738 95496361 + Fggy protein_coding processed_transcript MGP_C3HHeJ_T0066007.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95376495 95641094 + Fggy protein_coding processed_transcript MGP_C3HHeJ_T0066008.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95376502 95496418 + MGP_C3HHeJ_P0066008 Fggy protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066009.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95390666 95583694 + Fggy protein_coding processed_transcript MGP_C3HHeJ_T0066010.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95495903 95531272 + Fggy protein_coding processed_transcript MGP_C3HHeJ_T0066011.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95531335 95689491 + MGP_C3HHeJ_P0066011 Fggy protein_coding protein_coding MGP_C3HHeJ_T0066012.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95583689 95689356 + MGP_C3HHeJ_P0066012 Fggy protein_coding protein_coding MGP_C3HHeJ_T0066013.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95612533 95689486 + MGP_C3HHeJ_P0066013 Fggy protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014366.1 MGP_C3HHeJ_G0012470.1 mouse_genomes_project 4 44596327 44598056 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004353.1 MGP_C3HHeJ_G0003789.1 mouse_genomes_project 4 11913433 11922839 + Gm11844 antisense antisense MGP_C3HHeJ_T0065922.1 MGP_C3HHeJ_G0028119.1 mouse_genomes_project 4 88188941 88189511 - MGP_C3HHeJ_P0065922 Ifna14 protein_coding protein_coding MGP_C3HHeJ_T0065923.1 MGP_C3HHeJ_G0028120.1 mouse_genomes_project 4 88242658 88251433 - MGP_C3HHeJ_P0065923 C87499 protein_coding protein_coding MGP_C3HHeJ_T0065924.1 MGP_C3HHeJ_G0028120.1 mouse_genomes_project 4 88242658 88251385 - MGP_C3HHeJ_P0065924 C87499 protein_coding protein_coding MGP_C3HHeJ_T0065925.1 MGP_C3HHeJ_G0028120.1 mouse_genomes_project 4 88243507 88251585 - MGP_C3HHeJ_P0065925 C87499 protein_coding protein_coding MGP_C3HHeJ_T0065926.1 MGP_C3HHeJ_G0028120.1 mouse_genomes_project 4 88244236 88251316 - MGP_C3HHeJ_P0065926 C87499 protein_coding protein_coding MGP_C3HHeJ_T0065927.1 MGP_C3HHeJ_G0028120.1 mouse_genomes_project 4 88244526 88251365 - MGP_C3HHeJ_P0065927 C87499 protein_coding protein_coding MGP_C3HHeJ_T0014581.1 MGP_C3HHeJ_G0012685.1 mouse_genomes_project 4 122235317 122235649 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011464.1 MGP_C3HHeJ_G0009597.1 mouse_genomes_project 4 31987694 31987799 + Gm23466 misc_RNA misc_RNA MGP_C3HHeJ_T0099350.1 MGP_C3HHeJ_G0037544.1 mouse_genomes_project 4 50327723 50327888 - Gm22042 snRNA snRNA MGP_C3HHeJ_T0011482.1 MGP_C3HHeJ_G0009615.1 mouse_genomes_project 4 109354760 109355034 - Gm23743 misc_RNA misc_RNA MGP_C3HHeJ_T0066365.1 MGP_C3HHeJ_G0028232.1 mouse_genomes_project 4 107360967 107389166 + MGP_C3HHeJ_P0066365 Hspb11 protein_coding protein_coding MGP_C3HHeJ_T0066366.1 MGP_C3HHeJ_G0028232.1 mouse_genomes_project 4 107361272 107372507 + Hspb11 protein_coding processed_transcript MGP_C3HHeJ_T0066367.1 MGP_C3HHeJ_G0028232.1 mouse_genomes_project 4 107361277 107389267 + MGP_C3HHeJ_P0066367 Hspb11 protein_coding protein_coding MGP_C3HHeJ_T0066368.1 MGP_C3HHeJ_G0028232.1 mouse_genomes_project 4 107361299 107389257 + MGP_C3HHeJ_P0066368 Hspb11 protein_coding protein_coding MGP_C3HHeJ_T0066369.1 MGP_C3HHeJ_G0028232.1 mouse_genomes_project 4 107369706 107389261 + Hspb11 protein_coding processed_transcript MGP_C3HHeJ_T0014350.1 MGP_C3HHeJ_G0012454.1 mouse_genomes_project 4 37733315 37734234 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014513.1 MGP_C3HHeJ_G0012617.1 mouse_genomes_project 4 101821021 101822042 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067072.1 MGP_C3HHeJ_G0028374.1 mouse_genomes_project 4 119234115 119235063 + MGP_C3HHeJ_P0067072 Olfr1340 protein_coding protein_coding MGP_C3HHeJ_T0001381.1 MGP_C3HHeJ_G0001312.1 mouse_genomes_project 4 99444751 99449428 + TEC TEC MGP_C3HHeJ_T0069580.1 MGP_C3HHeJ_G0028949.1 mouse_genomes_project 4 158529982 158533779 - Agrn protein_coding retained_intron MGP_C3HHeJ_T0069581.1 MGP_C3HHeJ_G0028949.1 mouse_genomes_project 4 158529982 158550574 - MGP_C3HHeJ_P0069581 Agrn protein_coding protein_coding MGP_C3HHeJ_T0069582.1 MGP_C3HHeJ_G0028949.1 mouse_genomes_project 4 158529982 158550574 - MGP_C3HHeJ_P0069582 Agrn protein_coding protein_coding MGP_C3HHeJ_T0069583.1 MGP_C3HHeJ_G0028949.1 mouse_genomes_project 4 158529982 158550574 - MGP_C3HHeJ_P0069583 Agrn protein_coding protein_coding MGP_C3HHeJ_T0069584.1 MGP_C3HHeJ_G0028949.1 mouse_genomes_project 4 158529986 158550780 - Agrn protein_coding retained_intron MGP_C3HHeJ_T0069585.1 MGP_C3HHeJ_G0028949.1 mouse_genomes_project 4 158530470 158562147 - MGP_C3HHeJ_P0069585 Agrn protein_coding protein_coding MGP_C3HHeJ_T0069586.1 MGP_C3HHeJ_G0028949.1 mouse_genomes_project 4 158536987 158538419 - Agrn protein_coding processed_transcript MGP_C3HHeJ_T0067080.1 MGP_C3HHeJ_G0028382.1 mouse_genomes_project 4 119450132 119451080 - MGP_C3HHeJ_P0067080 protein_coding protein_coding MGP_C3HHeJ_T0068316.1 MGP_C3HHeJ_G0028660.1 mouse_genomes_project 4 136999069 137024227 + Tcea3 protein_coding processed_transcript MGP_C3HHeJ_T0068317.1 MGP_C3HHeJ_G0028660.1 mouse_genomes_project 4 136999292 137027854 + MGP_C3HHeJ_P0068317 Tcea3 protein_coding protein_coding MGP_C3HHeJ_T0068318.1 MGP_C3HHeJ_G0028660.1 mouse_genomes_project 4 136999313 137016757 + MGP_C3HHeJ_P0068318 Tcea3 protein_coding protein_coding MGP_C3HHeJ_T0014652.1 MGP_C3HHeJ_G0012756.1 mouse_genomes_project 4 151159997 151163396 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099354.1 MGP_C3HHeJ_G0037548.1 mouse_genomes_project 4 62504736 62504843 - Gm24448 snRNA snRNA MGP_C3HHeJ_T0068502.1 MGP_C3HHeJ_G0028704.1 mouse_genomes_project 4 139861671 139880123 - MGP_C3HHeJ_P0068502 Otud3 protein_coding protein_coding MGP_C3HHeJ_T0065136.1 MGP_C3HHeJ_G0027933.1 mouse_genomes_project 4 42536793 42597067 + MGP_C3HHeJ_P0065136 Melk protein_coding protein_coding MGP_C3HHeJ_T0065137.1 MGP_C3HHeJ_G0027933.1 mouse_genomes_project 4 42538574 42563333 + MGP_C3HHeJ_P0065137 Melk protein_coding protein_coding MGP_C3HHeJ_T0065138.1 MGP_C3HHeJ_G0027933.1 mouse_genomes_project 4 42539475 42561908 + Melk protein_coding processed_transcript MGP_C3HHeJ_T0065139.1 MGP_C3HHeJ_G0027933.1 mouse_genomes_project 4 42539475 42555355 + MGP_C3HHeJ_P0065139 Melk protein_coding protein_coding MGP_C3HHeJ_T0064671.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 33289226 33432434 - MGP_C3HHeJ_P0064671 Lingo2 protein_coding protein_coding MGP_C3HHeJ_T0064672.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 33289985 34601910 - MGP_C3HHeJ_P0064672 Lingo2 protein_coding protein_coding MGP_C3HHeJ_T0064673.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 33289985 33739947 - MGP_C3HHeJ_P0064673 Lingo2 protein_coding protein_coding MGP_C3HHeJ_T0064674.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 33289985 33432434 - MGP_C3HHeJ_P0064674 Lingo2 protein_coding protein_coding MGP_C3HHeJ_T0064675.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 33290422 33647007 - MGP_C3HHeJ_P0064675 Lingo2 protein_coding protein_coding MGP_C3HHeJ_T0064676.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 33647004 34601173 - Lingo2 protein_coding processed_transcript MGP_C3HHeJ_T0064677.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 34357384 34602431 - Lingo2 protein_coding processed_transcript MGP_C3HHeJ_T0064678.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 34360121 34601154 - Lingo2 protein_coding processed_transcript MGP_C3HHeJ_T0064679.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 34360366 34601176 - Lingo2 protein_coding processed_transcript MGP_C3HHeJ_T0064680.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 34601786 34602434 - Lingo2 protein_coding processed_transcript MGP_C3HHeJ_T0068707.1 MGP_C3HHeJ_G0028753.1 mouse_genomes_project 4 142849643 142851392 - MGP_C3HHeJ_P0068707 protein_coding protein_coding MGP_C3HHeJ_T0014602.1 MGP_C3HHeJ_G0012706.1 mouse_genomes_project 4 129065578 129066582 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064812.1 MGP_C3HHeJ_G0027869.1 mouse_genomes_project 4 39698995 39699750 - MGP_C3HHeJ_P0064812 Ccl27b protein_coding protein_coding MGP_C3HHeJ_T0007826.1 MGP_C3HHeJ_G0006394.1 mouse_genomes_project 4 101325722 101330395 + Gm12798 lincRNA lincRNA MGP_C3HHeJ_T0100658.1 MGP_C3HHeJ_G0038852.1 mouse_genomes_project 4 117610548 117610618 - Gm22980 snoRNA snoRNA MGP_C3HHeJ_T0001374.1 MGP_C3HHeJ_G0001305.1 mouse_genomes_project 4 19495300 19498893 + TEC TEC MGP_C3HHeJ_T0007712.1 MGP_C3HHeJ_G0006299.1 mouse_genomes_project 4 5994911 5997504 - Gm26548 lincRNA lincRNA MGP_C3HHeJ_T0067539.1 MGP_C3HHeJ_G0028497.1 mouse_genomes_project 4 128147688 128513597 + Csmd2 protein_coding processed_transcript MGP_C3HHeJ_T0067540.1 MGP_C3HHeJ_G0028497.1 mouse_genomes_project 4 128147872 128595516 + Csmd2 protein_coding retained_intron MGP_C3HHeJ_T0067541.1 MGP_C3HHeJ_G0028497.1 mouse_genomes_project 4 128147898 128742483 + MGP_C3HHeJ_P0067541 Csmd2 protein_coding protein_coding MGP_C3HHeJ_T0067543.1 MGP_C3HHeJ_G0028497.1 mouse_genomes_project 4 128650415 128673888 + Csmd2 protein_coding processed_transcript MGP_C3HHeJ_T0067544.1 MGP_C3HHeJ_G0028497.1 mouse_genomes_project 4 128694157 128703239 + Csmd2 protein_coding processed_transcript MGP_C3HHeJ_T0067545.1 MGP_C3HHeJ_G0028497.1 mouse_genomes_project 4 128722768 128727570 + Csmd2 protein_coding processed_transcript MGP_C3HHeJ_T0014558.1 MGP_C3HHeJ_G0012662.1 mouse_genomes_project 4 118012446 118012825 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066764.1 MGP_C3HHeJ_G0028313.1 mouse_genomes_project 4 116459501 116481257 + MGP_C3HHeJ_P0066764 Lrrc41 protein_coding protein_coding MGP_C3HHeJ_T0066765.1 MGP_C3HHeJ_G0028313.1 mouse_genomes_project 4 116459695 116467262 + Lrrc41 protein_coding processed_transcript MGP_C3HHeJ_T0066766.1 MGP_C3HHeJ_G0028313.1 mouse_genomes_project 4 116459777 116472743 + Lrrc41 protein_coding processed_transcript MGP_C3HHeJ_T0066767.1 MGP_C3HHeJ_G0028313.1 mouse_genomes_project 4 116461117 116472812 + Lrrc41 protein_coding processed_transcript MGP_C3HHeJ_T0066768.1 MGP_C3HHeJ_G0028313.1 mouse_genomes_project 4 116463621 116467260 + Lrrc41 protein_coding processed_transcript MGP_C3HHeJ_T0066769.1 MGP_C3HHeJ_G0028313.1 mouse_genomes_project 4 116473695 116477523 + Lrrc41 protein_coding processed_transcript MGP_C3HHeJ_T0014304.1 MGP_C3HHeJ_G0012408.1 mouse_genomes_project 4 23656971 23657188 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065490.1 MGP_C3HHeJ_G0028024.1 mouse_genomes_project 4 56712258 56879689 - MGP_C3HHeJ_P0065490 Svep1 protein_coding protein_coding MGP_C3HHeJ_T0065491.1 MGP_C3HHeJ_G0028024.1 mouse_genomes_project 4 56814869 56879705 - Svep1 protein_coding processed_transcript MGP_C3HHeJ_T0065492.1 MGP_C3HHeJ_G0028024.1 mouse_genomes_project 4 56816230 56879952 - Svep1 protein_coding processed_transcript MGP_C3HHeJ_T0065493.1 MGP_C3HHeJ_G0028024.1 mouse_genomes_project 4 56849410 56879781 - Svep1 protein_coding processed_transcript MGP_C3HHeJ_T0069021.1 MGP_C3HHeJ_G0028848.1 mouse_genomes_project 4 151796822 151824915 - MGP_C3HHeJ_P0069021 Slc25a33 protein_coding protein_coding MGP_C3HHeJ_T0066898.1 MGP_C3HHeJ_G0028338.1 mouse_genomes_project 4 117548646 117569839 + MGP_C3HHeJ_P0066898 Ptch2 protein_coding protein_coding MGP_C3HHeJ_T0066899.1 MGP_C3HHeJ_G0028338.1 mouse_genomes_project 4 117548667 117569839 + MGP_C3HHeJ_P0066899 Ptch2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066900.1 MGP_C3HHeJ_G0028338.1 mouse_genomes_project 4 117558481 117559899 + Ptch2 protein_coding retained_intron MGP_C3HHeJ_T0066901.1 MGP_C3HHeJ_G0028338.1 mouse_genomes_project 4 117558808 117562942 + MGP_C3HHeJ_P0066901 Ptch2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066902.1 MGP_C3HHeJ_G0028338.1 mouse_genomes_project 4 117564661 117565515 + Ptch2 protein_coding retained_intron MGP_C3HHeJ_T0066903.1 MGP_C3HHeJ_G0028338.1 mouse_genomes_project 4 117567879 117570557 + Ptch2 protein_coding retained_intron MGP_C3HHeJ_T0064245.1 MGP_C3HHeJ_G0027735.1 mouse_genomes_project 4 3020863 3052027 + MGP_C3HHeJ_P0064245 Sdcbp protein_coding protein_coding MGP_C3HHeJ_T0064246.1 MGP_C3HHeJ_G0027735.1 mouse_genomes_project 4 3020890 3051398 + MGP_C3HHeJ_P0064246 Sdcbp protein_coding protein_coding MGP_C3HHeJ_T0064247.1 MGP_C3HHeJ_G0027735.1 mouse_genomes_project 4 3020921 3029342 + Sdcbp protein_coding processed_transcript MGP_C3HHeJ_T0064248.1 MGP_C3HHeJ_G0027735.1 mouse_genomes_project 4 3020922 3048854 + MGP_C3HHeJ_P0064248 Sdcbp protein_coding protein_coding MGP_C3HHeJ_T0064249.1 MGP_C3HHeJ_G0027735.1 mouse_genomes_project 4 3020925 3039165 + Sdcbp protein_coding processed_transcript MGP_C3HHeJ_T0064250.1 MGP_C3HHeJ_G0027735.1 mouse_genomes_project 4 3020926 3040000 + MGP_C3HHeJ_P0064250 Sdcbp protein_coding protein_coding MGP_C3HHeJ_T0064251.1 MGP_C3HHeJ_G0027735.1 mouse_genomes_project 4 3020926 3064152 + MGP_C3HHeJ_P0064251 Sdcbp protein_coding protein_coding MGP_C3HHeJ_T0064252.1 MGP_C3HHeJ_G0027735.1 mouse_genomes_project 4 3032054 3048738 + MGP_C3HHeJ_P0064252 Sdcbp protein_coding protein_coding MGP_C3HHeJ_T0068845.1 MGP_C3HHeJ_G0028814.1 mouse_genomes_project 4 149914987 149916405 + MGP_C3HHeJ_P0068845 Nppb protein_coding protein_coding MGP_C3HHeJ_T0066214.1 MGP_C3HHeJ_G0028200.1 mouse_genomes_project 4 103039158 103077332 - MGP_C3HHeJ_P0066214 Wdr78 protein_coding protein_coding MGP_C3HHeJ_T0066215.1 MGP_C3HHeJ_G0028200.1 mouse_genomes_project 4 103042469 103077511 - Wdr78 protein_coding retained_intron MGP_C3HHeJ_T0066216.1 MGP_C3HHeJ_G0028200.1 mouse_genomes_project 4 103042469 103120988 - MGP_C3HHeJ_P0066216 Wdr78 protein_coding protein_coding MGP_C3HHeJ_T0066217.1 MGP_C3HHeJ_G0028200.1 mouse_genomes_project 4 103042473 103121244 - MGP_C3HHeJ_P0066217 Wdr78 protein_coding protein_coding MGP_C3HHeJ_T0066218.1 MGP_C3HHeJ_G0028200.1 mouse_genomes_project 4 103042473 103120913 - MGP_C3HHeJ_P0066218 Wdr78 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066219.1 MGP_C3HHeJ_G0028200.1 mouse_genomes_project 4 103042505 103080130 - Wdr78 protein_coding retained_intron MGP_C3HHeJ_T0066220.1 MGP_C3HHeJ_G0028200.1 mouse_genomes_project 4 103043676 103046015 - Wdr78 protein_coding processed_transcript MGP_C3HHeJ_T0066221.1 MGP_C3HHeJ_G0028200.1 mouse_genomes_project 4 103087661 103093080 - MGP_C3HHeJ_P0066221 Wdr78 protein_coding protein_coding MGP_C3HHeJ_T0007844.1 MGP_C3HHeJ_G0006406.1 mouse_genomes_project 4 108793477 108797814 - Gm17354 lincRNA lincRNA MGP_C3HHeJ_T0014434.1 MGP_C3HHeJ_G0012538.1 mouse_genomes_project 4 73160590 73161386 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014399.1 MGP_C3HHeJ_G0012503.1 mouse_genomes_project 4 54080400 54080828 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066121.1 MGP_C3HHeJ_G0028177.1 mouse_genomes_project 4 99697760 99769525 - MGP_C3HHeJ_P0066121 Itgb3bp protein_coding protein_coding MGP_C3HHeJ_T0066122.1 MGP_C3HHeJ_G0028177.1 mouse_genomes_project 4 99698260 99840705 - Itgb3bp protein_coding processed_transcript MGP_C3HHeJ_T0066123.1 MGP_C3HHeJ_G0028177.1 mouse_genomes_project 4 99699689 99769431 - Itgb3bp protein_coding processed_transcript MGP_C3HHeJ_T0066124.1 MGP_C3HHeJ_G0028177.1 mouse_genomes_project 4 99704356 99769473 - Itgb3bp protein_coding processed_transcript MGP_C3HHeJ_T0066125.1 MGP_C3HHeJ_G0028177.1 mouse_genomes_project 4 99714319 99769429 - Itgb3bp protein_coding processed_transcript MGP_C3HHeJ_T0066166.1 MGP_C3HHeJ_G0028189.1 mouse_genomes_project 4 101658145 101746344 + MGP_C3HHeJ_P0066166 Lepr protein_coding protein_coding MGP_C3HHeJ_T0066167.1 MGP_C3HHeJ_G0028189.1 mouse_genomes_project 4 101658145 101748029 + MGP_C3HHeJ_P0066167 Lepr protein_coding protein_coding MGP_C3HHeJ_T0066168.1 MGP_C3HHeJ_G0028189.1 mouse_genomes_project 4 101658145 101731035 + MGP_C3HHeJ_P0066168 Lepr protein_coding protein_coding MGP_C3HHeJ_T0066169.1 MGP_C3HHeJ_G0028189.1 mouse_genomes_project 4 101658148 101676190 + MGP_C3HHeJ_P0066169 Lepr protein_coding protein_coding MGP_C3HHeJ_T0066170.1 MGP_C3HHeJ_G0028189.1 mouse_genomes_project 4 101704482 101714133 + Lepr protein_coding processed_transcript MGP_C3HHeJ_T0066171.1 MGP_C3HHeJ_G0028189.1 mouse_genomes_project 4 101706912 101717435 + Lepr protein_coding processed_transcript MGP_C3HHeJ_T0066172.1 MGP_C3HHeJ_G0028189.1 mouse_genomes_project 4 101727730 101730933 + Lepr protein_coding processed_transcript MGP_C3HHeJ_T0068487.1 MGP_C3HHeJ_G0028700.1 mouse_genomes_project 4 139735060 139741336 + MGP_C3HHeJ_P0068487 Pla2g2d protein_coding protein_coding MGP_C3HHeJ_T0068488.1 MGP_C3HHeJ_G0028700.1 mouse_genomes_project 4 139737221 139740453 + MGP_C3HHeJ_P0068488 Pla2g2d protein_coding protein_coding MGP_C3HHeJ_T0007802.1 MGP_C3HHeJ_G0006375.1 mouse_genomes_project 4 88728179 88766506 + Gm12603 lincRNA lincRNA MGP_C3HHeJ_T0007803.1 MGP_C3HHeJ_G0006375.1 mouse_genomes_project 4 88737726 88766609 + Gm12603 lincRNA lincRNA MGP_C3HHeJ_T0017825.1 MGP_C3HHeJ_G0015308.1 mouse_genomes_project 4 51352501 51369161 + 4930552N02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0010502.1 MGP_C3HHeJ_G0008635.1 mouse_genomes_project 4 38936315 38936379 + Mir3094 miRNA miRNA MGP_C3HHeJ_T0065341.1 MGP_C3HHeJ_G0027978.1 mouse_genomes_project 4 47492132 47641383 + Plppr1 protein_coding retained_intron MGP_C3HHeJ_T0065342.1 MGP_C3HHeJ_G0027978.1 mouse_genomes_project 4 47492141 47783842 + MGP_C3HHeJ_P0065342 Plppr1 protein_coding protein_coding MGP_C3HHeJ_T0065343.1 MGP_C3HHeJ_G0027978.1 mouse_genomes_project 4 47492315 47739247 + Plppr1 protein_coding retained_intron MGP_C3HHeJ_T0014319.1 MGP_C3HHeJ_G0012423.1 mouse_genomes_project 4 26784800 26785308 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066344.1 MGP_C3HHeJ_G0028228.1 mouse_genomes_project 4 107234055 107280549 - MGP_C3HHeJ_P0066344 Tceanc2 protein_coding protein_coding MGP_C3HHeJ_T0066345.1 MGP_C3HHeJ_G0028228.1 mouse_genomes_project 4 107239165 107280368 - MGP_C3HHeJ_P0066345 Tceanc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066346.1 MGP_C3HHeJ_G0028228.1 mouse_genomes_project 4 107239220 107280285 - Tceanc2 protein_coding processed_transcript MGP_C3HHeJ_T0066347.1 MGP_C3HHeJ_G0028228.1 mouse_genomes_project 4 107239428 107281105 - MGP_C3HHeJ_P0066347 Tceanc2 protein_coding protein_coding MGP_C3HHeJ_T0066348.1 MGP_C3HHeJ_G0028228.1 mouse_genomes_project 4 107239472 107280284 - MGP_C3HHeJ_P0066348 Tceanc2 protein_coding protein_coding MGP_C3HHeJ_T0066349.1 MGP_C3HHeJ_G0028228.1 mouse_genomes_project 4 107239592 107281118 - MGP_C3HHeJ_P0066349 Tceanc2 protein_coding protein_coding MGP_C3HHeJ_T0066350.1 MGP_C3HHeJ_G0028228.1 mouse_genomes_project 4 107266342 107279853 - Tceanc2 protein_coding processed_transcript MGP_C3HHeJ_T0066351.1 MGP_C3HHeJ_G0028228.1 mouse_genomes_project 4 107275008 107280210 - Tceanc2 protein_coding processed_transcript MGP_C3HHeJ_T0066352.1 MGP_C3HHeJ_G0028228.1 mouse_genomes_project 4 107278617 107279670 - Tceanc2 protein_coding processed_transcript MGP_C3HHeJ_T0100661.1 MGP_C3HHeJ_G0038855.1 mouse_genomes_project 4 117612224 117612303 - Snord55 snoRNA snoRNA MGP_C3HHeJ_T0004548.1 MGP_C3HHeJ_G0003937.1 mouse_genomes_project 4 158179406 158180093 - Mxra8os antisense antisense MGP_C3HHeJ_T0100656.1 MGP_C3HHeJ_G0038850.1 mouse_genomes_project 4 106177102 106177215 - Gm26047 snoRNA snoRNA MGP_C3HHeJ_T0100683.1 MGP_C3HHeJ_G0038877.1 mouse_genomes_project 4 137829056 137829185 + Gm23834 snoRNA snoRNA MGP_C3HHeJ_T0067619.1 MGP_C3HHeJ_G0028512.1 mouse_genomes_project 4 129399932 129437245 + MGP_C3HHeJ_P0067619 Yars protein_coding protein_coding MGP_C3HHeJ_T0067620.1 MGP_C3HHeJ_G0028512.1 mouse_genomes_project 4 129400074 129407614 + Yars protein_coding retained_intron MGP_C3HHeJ_T0067621.1 MGP_C3HHeJ_G0028512.1 mouse_genomes_project 4 129407287 129427187 + MGP_C3HHeJ_P0067621 Yars protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067622.1 MGP_C3HHeJ_G0028512.1 mouse_genomes_project 4 129407406 129424264 + Yars protein_coding processed_transcript MGP_C3HHeJ_T0067623.1 MGP_C3HHeJ_G0028512.1 mouse_genomes_project 4 129425186 129427461 + Yars protein_coding retained_intron MGP_C3HHeJ_T0067624.1 MGP_C3HHeJ_G0028512.1 mouse_genomes_project 4 129428852 129433364 + Yars protein_coding retained_intron MGP_C3HHeJ_T0067625.1 MGP_C3HHeJ_G0028512.1 mouse_genomes_project 4 129429304 129436301 + Yars protein_coding processed_transcript MGP_C3HHeJ_T0067626.1 MGP_C3HHeJ_G0028512.1 mouse_genomes_project 4 129431394 129432572 + Yars protein_coding retained_intron MGP_C3HHeJ_T0001384.1 MGP_C3HHeJ_G0001315.1 mouse_genomes_project 4 119828415 119828849 - TEC TEC MGP_C3HHeJ_T0014476.1 MGP_C3HHeJ_G0012580.1 mouse_genomes_project 4 90067501 90068493 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068863.1 MGP_C3HHeJ_G0028820.1 mouse_genomes_project 4 150072543 150082916 + Mad2l2 protein_coding processed_transcript MGP_C3HHeJ_T0068864.1 MGP_C3HHeJ_G0028820.1 mouse_genomes_project 4 150082306 150088208 + MGP_C3HHeJ_P0068864 Mad2l2 protein_coding protein_coding MGP_C3HHeJ_T0068865.1 MGP_C3HHeJ_G0028820.1 mouse_genomes_project 4 150082848 150088207 + MGP_C3HHeJ_P0068865 Mad2l2 protein_coding protein_coding MGP_C3HHeJ_T0068866.1 MGP_C3HHeJ_G0028820.1 mouse_genomes_project 4 150082886 150086542 + Mad2l2 protein_coding retained_intron MGP_C3HHeJ_T0068867.1 MGP_C3HHeJ_G0028820.1 mouse_genomes_project 4 150082919 150088771 + MGP_C3HHeJ_P0068867 Mad2l2 protein_coding protein_coding MGP_C3HHeJ_T0068868.1 MGP_C3HHeJ_G0028820.1 mouse_genomes_project 4 150087876 150088538 + Mad2l2 protein_coding retained_intron MGP_C3HHeJ_T0014441.1 MGP_C3HHeJ_G0012545.1 mouse_genomes_project 4 74518727 74519442 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066083.1 MGP_C3HHeJ_G0028170.1 mouse_genomes_project 4 98794397 98805868 + MGP_C3HHeJ_P0066083 Usp1 protein_coding protein_coding MGP_C3HHeJ_T0066084.1 MGP_C3HHeJ_G0028170.1 mouse_genomes_project 4 98794466 98805868 + MGP_C3HHeJ_P0066084 Usp1 protein_coding protein_coding MGP_C3HHeJ_T0066085.1 MGP_C3HHeJ_G0028170.1 mouse_genomes_project 4 98794551 98799177 + MGP_C3HHeJ_P0066085 Usp1 protein_coding protein_coding MGP_C3HHeJ_T0066086.1 MGP_C3HHeJ_G0028170.1 mouse_genomes_project 4 98799003 98801788 + MGP_C3HHeJ_P0066086 Usp1 protein_coding protein_coding MGP_C3HHeJ_T0065376.1 MGP_C3HHeJ_G0027990.1 mouse_genomes_project 4 50961007 51011735 + MGP_C3HHeJ_P0065376 Smc2 protein_coding protein_coding MGP_C3HHeJ_T0065377.1 MGP_C3HHeJ_G0027990.1 mouse_genomes_project 4 50961007 51011735 + MGP_C3HHeJ_P0065377 Smc2 protein_coding protein_coding MGP_C3HHeJ_T0065378.1 MGP_C3HHeJ_G0027990.1 mouse_genomes_project 4 50961016 50970575 + Smc2 protein_coding processed_transcript MGP_C3HHeJ_T0065379.1 MGP_C3HHeJ_G0027990.1 mouse_genomes_project 4 50961030 50974986 + Smc2 protein_coding processed_transcript MGP_C3HHeJ_T0065380.1 MGP_C3HHeJ_G0027990.1 mouse_genomes_project 4 50961033 50982232 + MGP_C3HHeJ_P0065380 Smc2 protein_coding protein_coding MGP_C3HHeJ_T0066274.1 MGP_C3HHeJ_G0028215.1 mouse_genomes_project 4 106546178 106554978 - MGP_C3HHeJ_P0066274 Bsnd protein_coding protein_coding MGP_C3HHeJ_T0004462.1 MGP_C3HHeJ_G0003873.1 mouse_genomes_project 4 126201461 126203215 + Gm12946 antisense antisense MGP_C3HHeJ_T0014253.1 MGP_C3HHeJ_G0012357.1 mouse_genomes_project 4 11296799 11297240 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065273.1 MGP_C3HHeJ_G0027961.1 mouse_genomes_project 4 44868150 44900816 - MGP_C3HHeJ_P0065273 Coro2a protein_coding protein_coding MGP_C3HHeJ_T0065274.1 MGP_C3HHeJ_G0027961.1 mouse_genomes_project 4 44868156 44900834 - MGP_C3HHeJ_P0065274 Coro2a protein_coding protein_coding MGP_C3HHeJ_T0065275.1 MGP_C3HHeJ_G0027961.1 mouse_genomes_project 4 44868156 44928607 - MGP_C3HHeJ_P0065275 Coro2a protein_coding protein_coding MGP_C3HHeJ_T0065276.1 MGP_C3HHeJ_G0027961.1 mouse_genomes_project 4 44872471 44875711 - Coro2a protein_coding retained_intron MGP_C3HHeJ_T0065277.1 MGP_C3HHeJ_G0027961.1 mouse_genomes_project 4 44875909 44927341 - Coro2a protein_coding retained_intron MGP_C3HHeJ_T0014420.1 MGP_C3HHeJ_G0012524.1 mouse_genomes_project 4 67369233 67371278 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099363.1 MGP_C3HHeJ_G0037557.1 mouse_genomes_project 4 93360579 93360686 + Gm24796 snRNA snRNA MGP_C3HHeJ_T0068909.1 MGP_C3HHeJ_G0028830.1 mouse_genomes_project 4 150573273 150575137 + MGP_C3HHeJ_P0068909 Masp2 protein_coding protein_coding MGP_C3HHeJ_T0068910.1 MGP_C3HHeJ_G0028830.1 mouse_genomes_project 4 150573283 150586418 + MGP_C3HHeJ_P0068910 Masp2 protein_coding protein_coding MGP_C3HHeJ_T0068911.1 MGP_C3HHeJ_G0028830.1 mouse_genomes_project 4 150573287 150581131 + Masp2 protein_coding retained_intron MGP_C3HHeJ_T0068912.1 MGP_C3HHeJ_G0028830.1 mouse_genomes_project 4 150573294 150575137 + Masp2 protein_coding retained_intron MGP_C3HHeJ_T0065782.1 MGP_C3HHeJ_G0028097.1 mouse_genomes_project 4 82267114 82432732 - MGP_C3HHeJ_P0065782 Frem1 protein_coding protein_coding MGP_C3HHeJ_T0065783.1 MGP_C3HHeJ_G0028097.1 mouse_genomes_project 4 82267121 82398582 - MGP_C3HHeJ_P0065783 Frem1 protein_coding protein_coding MGP_C3HHeJ_T0065784.1 MGP_C3HHeJ_G0028097.1 mouse_genomes_project 4 82267121 82432904 - MGP_C3HHeJ_P0065784 Frem1 protein_coding protein_coding MGP_C3HHeJ_T0065785.1 MGP_C3HHeJ_G0028097.1 mouse_genomes_project 4 82269758 82282961 - Frem1 protein_coding processed_transcript MGP_C3HHeJ_T0065786.1 MGP_C3HHeJ_G0028097.1 mouse_genomes_project 4 82284159 82293318 - Frem1 protein_coding retained_intron MGP_C3HHeJ_T0065787.1 MGP_C3HHeJ_G0028097.1 mouse_genomes_project 4 82305292 82310064 - Frem1 protein_coding retained_intron MGP_C3HHeJ_T0065788.1 MGP_C3HHeJ_G0028097.1 mouse_genomes_project 4 82307609 82340639 - MGP_C3HHeJ_P0065788 Frem1 protein_coding protein_coding MGP_C3HHeJ_T0065789.1 MGP_C3HHeJ_G0028097.1 mouse_genomes_project 4 82366920 82432904 - Frem1 protein_coding processed_transcript MGP_C3HHeJ_T0007933.1 MGP_C3HHeJ_G0006469.1 mouse_genomes_project 4 142479541 142482581 + Gm13074 lincRNA lincRNA MGP_C3HHeJ_T0100625.1 MGP_C3HHeJ_G0038819.1 mouse_genomes_project 4 50172180 50172289 + Gm23043 snoRNA snoRNA MGP_C3HHeJ_T0099414.1 MGP_C3HHeJ_G0037608.1 mouse_genomes_project 4 158376800 158376901 - Gm25982 snRNA snRNA MGP_C3HHeJ_T0014392.1 MGP_C3HHeJ_G0012496.1 mouse_genomes_project 4 53400420 53402007 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004396.1 MGP_C3HHeJ_G0003827.1 mouse_genomes_project 4 86061828 86063182 + Saxo1os antisense antisense MGP_C3HHeJ_T0004511.1 MGP_C3HHeJ_G0003911.1 mouse_genomes_project 4 150005578 150007199 - Gm13201 antisense antisense MGP_C3HHeJ_T0004512.1 MGP_C3HHeJ_G0003911.1 mouse_genomes_project 4 150005793 150012109 - Gm13201 antisense antisense MGP_C3HHeJ_T0007829.1 MGP_C3HHeJ_G0006397.1 mouse_genomes_project 4 103380969 103493148 + Gm12718 lincRNA lincRNA MGP_C3HHeJ_T0007830.1 MGP_C3HHeJ_G0006397.1 mouse_genomes_project 4 103380990 103493130 + Gm12718 lincRNA lincRNA MGP_C3HHeJ_T0064999.1 MGP_C3HHeJ_G0027905.1 mouse_genomes_project 4 41660804 41662451 - MGP_C3HHeJ_P0064999 Sit1 protein_coding protein_coding MGP_C3HHeJ_T0065000.1 MGP_C3HHeJ_G0027905.1 mouse_genomes_project 4 41660910 41661939 - Sit1 protein_coding processed_transcript MGP_C3HHeJ_T0007909.1 MGP_C3HHeJ_G0006449.1 mouse_genomes_project 4 134358208 134359399 + Gm12974 lincRNA lincRNA MGP_C3HHeJ_T0004445.1 MGP_C3HHeJ_G0003859.1 mouse_genomes_project 4 119144107 119147324 - Gm12853 antisense antisense MGP_C3HHeJ_T0001386.1 MGP_C3HHeJ_G0001317.1 mouse_genomes_project 4 132272914 132277524 + TEC TEC MGP_C3HHeJ_T0068719.1 MGP_C3HHeJ_G0028758.1 mouse_genomes_project 4 142987664 143019192 - MGP_C3HHeJ_P0068719 Ctrc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068721.1 MGP_C3HHeJ_G0028758.1 mouse_genomes_project 4 143011251 143019286 - Ctrc protein_coding processed_transcript MGP_C3HHeJ_T0068722.1 MGP_C3HHeJ_G0028758.1 mouse_genomes_project 4 143011251 143019212 - MGP_C3HHeJ_P0068722 Ctrc protein_coding protein_coding MGP_C3HHeJ_T0068723.1 MGP_C3HHeJ_G0028758.1 mouse_genomes_project 4 143011256 143019288 - MGP_C3HHeJ_P0068723 Ctrc protein_coding protein_coding MGP_C3HHeJ_T0068724.1 MGP_C3HHeJ_G0028758.1 mouse_genomes_project 4 143017767 143018161 - Ctrc protein_coding processed_transcript MGP_C3HHeJ_T0065278.1 MGP_C3HHeJ_G0027962.1 mouse_genomes_project 4 44930793 44976572 - MGP_C3HHeJ_P0065278 Tbc1d2 protein_coding protein_coding MGP_C3HHeJ_T0065279.1 MGP_C3HHeJ_G0027962.1 mouse_genomes_project 4 44958908 44976572 - MGP_C3HHeJ_P0065279 Tbc1d2 protein_coding protein_coding MGP_C3HHeJ_T0069318.1 MGP_C3HHeJ_G0028901.1 mouse_genomes_project 4 157147599 157163365 + MGP_C3HHeJ_P0069318 protein_coding protein_coding MGP_C3HHeJ_T0069319.1 MGP_C3HHeJ_G0028901.1 mouse_genomes_project 4 157158139 157159218 + protein_coding processed_transcript MGP_C3HHeJ_T0100664.1 MGP_C3HHeJ_G0038858.1 mouse_genomes_project 4 121669927 121670052 - Gm26186 snoRNA snoRNA MGP_C3HHeJ_T0014419.1 MGP_C3HHeJ_G0012523.1 mouse_genomes_project 4 66566015 66566642 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007852.1 MGP_C3HHeJ_G0006414.1 mouse_genomes_project 4 119578726 119592896 - Gm12866 lincRNA lincRNA MGP_C3HHeJ_T0099356.1 MGP_C3HHeJ_G0037550.1 mouse_genomes_project 4 67256863 67257034 + Gm23738 snRNA snRNA MGP_C3HHeJ_T0069127.1 MGP_C3HHeJ_G0028868.1 mouse_genomes_project 4 154166375 154173001 - MGP_C3HHeJ_P0069127 Phf13 protein_coding protein_coding MGP_C3HHeJ_T0010515.1 MGP_C3HHeJ_G0008648.1 mouse_genomes_project 4 81391208 81391318 - Gm22402 miRNA miRNA MGP_C3HHeJ_T0067511.1 MGP_C3HHeJ_G0028487.1 mouse_genomes_project 4 127170580 127184610 - MGP_C3HHeJ_P0067511 Zmym1 protein_coding protein_coding MGP_C3HHeJ_T0067512.1 MGP_C3HHeJ_G0028487.1 mouse_genomes_project 4 127171079 127182449 - MGP_C3HHeJ_P0067512 Zmym1 protein_coding protein_coding MGP_C3HHeJ_T0067513.1 MGP_C3HHeJ_G0028487.1 mouse_genomes_project 4 127171128 127184518 - Zmym1 protein_coding processed_transcript MGP_C3HHeJ_T0067514.1 MGP_C3HHeJ_G0028487.1 mouse_genomes_project 4 127171128 127184582 - MGP_C3HHeJ_P0067514 Zmym1 protein_coding protein_coding MGP_C3HHeJ_T0067515.1 MGP_C3HHeJ_G0028487.1 mouse_genomes_project 4 127171128 127184561 - MGP_C3HHeJ_P0067515 Zmym1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067516.1 MGP_C3HHeJ_G0028487.1 mouse_genomes_project 4 127172151 127182344 - Zmym1 protein_coding processed_transcript MGP_C3HHeJ_T0067517.1 MGP_C3HHeJ_G0028487.1 mouse_genomes_project 4 127177774 127181038 - Zmym1 protein_coding processed_transcript MGP_C3HHeJ_T0067518.1 MGP_C3HHeJ_G0028487.1 mouse_genomes_project 4 127177813 127184544 - MGP_C3HHeJ_P0067518 Zmym1 protein_coding protein_coding MGP_C3HHeJ_T0067709.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129872919 129874065 - Ccdc28b protein_coding processed_transcript MGP_C3HHeJ_T0067710.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129872919 129877397 - MGP_C3HHeJ_P0067710 Ccdc28b protein_coding protein_coding MGP_C3HHeJ_T0067711.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129872920 129874388 - Ccdc28b protein_coding retained_intron MGP_C3HHeJ_T0067712.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129872921 129874894 - Ccdc28b protein_coding processed_transcript MGP_C3HHeJ_T0067713.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129872921 129877287 - MGP_C3HHeJ_P0067713 Ccdc28b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067714.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129873948 129877328 - MGP_C3HHeJ_P0067714 Ccdc28b protein_coding protein_coding MGP_C3HHeJ_T0067715.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129874221 129876175 - Ccdc28b protein_coding processed_transcript MGP_C3HHeJ_T0067716.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129874475 129877336 - MGP_C3HHeJ_P0067716 Ccdc28b protein_coding protein_coding MGP_C3HHeJ_T0067717.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129875627 129877294 - Ccdc28b protein_coding retained_intron MGP_C3HHeJ_T0067718.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129876749 129877349 - Ccdc28b protein_coding retained_intron MGP_C3HHeJ_T0007891.1 MGP_C3HHeJ_G0006439.1 mouse_genomes_project 4 131354599 131359720 - A930031H19Rik lincRNA lincRNA MGP_C3HHeJ_T0007892.1 MGP_C3HHeJ_G0006439.1 mouse_genomes_project 4 131354599 131364071 - A930031H19Rik lincRNA lincRNA MGP_C3HHeJ_T0100635.1 MGP_C3HHeJ_G0038829.1 mouse_genomes_project 4 61730024 61730157 + Gm24117 snoRNA snoRNA MGP_C3HHeJ_T0066692.1 MGP_C3HHeJ_G0028294.1 mouse_genomes_project 4 115561872 115616616 + MGP_C3HHeJ_P0066692 protein_coding protein_coding MGP_C3HHeJ_T0064602.1 MGP_C3HHeJ_G0027819.1 mouse_genomes_project 4 30687839 30714183 + MGP_C3HHeJ_P0064602 Srsf12 protein_coding protein_coding MGP_C3HHeJ_T0064603.1 MGP_C3HHeJ_G0027819.1 mouse_genomes_project 4 30688154 30714193 + MGP_C3HHeJ_P0064603 Srsf12 protein_coding protein_coding MGP_C3HHeJ_T0064565.1 MGP_C3HHeJ_G0027810.1 mouse_genomes_project 4 30056401 30073489 + Casp8ap2 protein_coding processed_transcript MGP_C3HHeJ_T0064566.1 MGP_C3HHeJ_G0027810.1 mouse_genomes_project 4 30056420 30081239 + Casp8ap2 protein_coding processed_transcript MGP_C3HHeJ_T0064567.1 MGP_C3HHeJ_G0027810.1 mouse_genomes_project 4 30056423 30095349 + MGP_C3HHeJ_P0064567 Casp8ap2 protein_coding protein_coding MGP_C3HHeJ_T0064568.1 MGP_C3HHeJ_G0027810.1 mouse_genomes_project 4 30056428 30095349 + MGP_C3HHeJ_P0064568 Casp8ap2 protein_coding protein_coding MGP_C3HHeJ_T0064569.1 MGP_C3HHeJ_G0027810.1 mouse_genomes_project 4 30065747 30095349 + MGP_C3HHeJ_P0064569 Casp8ap2 protein_coding protein_coding MGP_C3HHeJ_T0097905.1 MGP_C3HHeJ_G0036117.1 mouse_genomes_project 4 123873050 123874547 - pseudogene pseudogene MGP_C3HHeJ_T0064721.1 MGP_C3HHeJ_G0027847.1 mouse_genomes_project 4 38857089 38870462 + MGP_C3HHeJ_P0064721 Spink4 protein_coding protein_coding MGP_C3HHeJ_T0064722.1 MGP_C3HHeJ_G0027847.1 mouse_genomes_project 4 38857091 38862741 + Spink4 protein_coding processed_transcript MGP_C3HHeJ_T0065080.1 MGP_C3HHeJ_G0027918.1 mouse_genomes_project 4 41853494 41862503 - MGP_C3HHeJ_P0065080 Fam221b protein_coding protein_coding MGP_C3HHeJ_T0065081.1 MGP_C3HHeJ_G0027918.1 mouse_genomes_project 4 41856978 41862507 - Fam221b protein_coding retained_intron MGP_C3HHeJ_T0064356.1 MGP_C3HHeJ_G0027753.1 mouse_genomes_project 4 8359770 8396003 + Rad54b protein_coding processed_transcript MGP_C3HHeJ_T0064357.1 MGP_C3HHeJ_G0027753.1 mouse_genomes_project 4 8359790 8388109 + MGP_C3HHeJ_P0064357 Rad54b protein_coding protein_coding MGP_C3HHeJ_T0064358.1 MGP_C3HHeJ_G0027753.1 mouse_genomes_project 4 8359797 8381308 + MGP_C3HHeJ_P0064358 Rad54b protein_coding protein_coding MGP_C3HHeJ_T0064359.1 MGP_C3HHeJ_G0027753.1 mouse_genomes_project 4 8359820 8419341 + MGP_C3HHeJ_P0064359 Rad54b protein_coding protein_coding MGP_C3HHeJ_T0064360.1 MGP_C3HHeJ_G0027753.1 mouse_genomes_project 4 8378993 8398133 + Rad54b protein_coding processed_transcript MGP_C3HHeJ_T0064362.1 MGP_C3HHeJ_G0027753.1 mouse_genomes_project 4 8398232 8409698 + MGP_C3HHeJ_P0064362 Rad54b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064363.1 MGP_C3HHeJ_G0027753.1 mouse_genomes_project 4 8412928 8414317 + Rad54b protein_coding retained_intron MGP_C3HHeJ_T0014231.1 MGP_C3HHeJ_G0012335.1 mouse_genomes_project 4 3170702 3171146 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014369.1 MGP_C3HHeJ_G0012473.1 mouse_genomes_project 4 45388652 45389015 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099362.1 MGP_C3HHeJ_G0037556.1 mouse_genomes_project 4 92625409 92625517 - Gm22605 snRNA snRNA MGP_C3HHeJ_T0067967.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133502148 133557364 + Ahdc1 protein_coding processed_transcript MGP_C3HHeJ_T0067968.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133502394 133575858 + MGP_C3HHeJ_P0067968 Ahdc1 protein_coding protein_coding MGP_C3HHeJ_T0067969.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133502394 133576105 + MGP_C3HHeJ_P0067969 Ahdc1 protein_coding protein_coding MGP_C3HHeJ_T0067970.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133502431 133557655 + Ahdc1 protein_coding processed_transcript MGP_C3HHeJ_T0067971.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133502453 133551835 + Ahdc1 protein_coding processed_transcript MGP_C3HHeJ_T0067972.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133502653 133575647 + Ahdc1 protein_coding processed_transcript MGP_C3HHeJ_T0067973.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133502865 133557366 + Ahdc1 protein_coding processed_transcript MGP_C3HHeJ_T0067974.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133502907 133558320 + Ahdc1 protein_coding processed_transcript MGP_C3HHeJ_T0067975.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133503019 133575648 + MGP_C3HHeJ_P0067975 Ahdc1 protein_coding protein_coding MGP_C3HHeJ_T0067976.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133536281 133575249 + MGP_C3HHeJ_P0067976 Ahdc1 protein_coding protein_coding MGP_C3HHeJ_T0067977.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133562795 133570063 + Ahdc1 protein_coding processed_transcript MGP_C3HHeJ_T0068422.1 MGP_C3HHeJ_G0028685.1 mouse_genomes_project 4 138760612 138814913 + MGP_C3HHeJ_P0068422 Ece1 protein_coding protein_coding MGP_C3HHeJ_T0068423.1 MGP_C3HHeJ_G0028685.1 mouse_genomes_project 4 138814529 138836796 + MGP_C3HHeJ_P0068423 Ece1 protein_coding protein_coding MGP_C3HHeJ_T0068424.1 MGP_C3HHeJ_G0028685.1 mouse_genomes_project 4 138814740 138827172 + Ece1 protein_coding processed_transcript MGP_C3HHeJ_T0068425.1 MGP_C3HHeJ_G0028685.1 mouse_genomes_project 4 138814784 138868332 + MGP_C3HHeJ_P0068425 Ece1 protein_coding protein_coding MGP_C3HHeJ_T0064978.1 MGP_C3HHeJ_G0027902.1 mouse_genomes_project 4 41601026 41603142 - MGP_C3HHeJ_P0064978 Fam166b protein_coding protein_coding MGP_C3HHeJ_T0064979.1 MGP_C3HHeJ_G0027902.1 mouse_genomes_project 4 41601083 41603125 - MGP_C3HHeJ_P0064979 Fam166b protein_coding protein_coding MGP_C3HHeJ_T0064980.1 MGP_C3HHeJ_G0027902.1 mouse_genomes_project 4 41601147 41602032 - MGP_C3HHeJ_P0064980 Fam166b protein_coding protein_coding MGP_C3HHeJ_T0064981.1 MGP_C3HHeJ_G0027902.1 mouse_genomes_project 4 41601147 41603097 - MGP_C3HHeJ_P0064981 Fam166b protein_coding protein_coding MGP_C3HHeJ_T0064982.1 MGP_C3HHeJ_G0027902.1 mouse_genomes_project 4 41601190 41603097 - MGP_C3HHeJ_P0064982 Fam166b protein_coding protein_coding MGP_C3HHeJ_T0064983.1 MGP_C3HHeJ_G0027902.1 mouse_genomes_project 4 41601595 41603097 - MGP_C3HHeJ_P0064983 Fam166b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007766.1 MGP_C3HHeJ_G0006344.1 mouse_genomes_project 4 53694010 53843423 - Gm12514 lincRNA lincRNA MGP_C3HHeJ_T0007767.1 MGP_C3HHeJ_G0006344.1 mouse_genomes_project 4 53694247 53698305 - Gm12514 lincRNA lincRNA MGP_C3HHeJ_T0064232.1 MGP_C3HHeJ_G0027731.1 mouse_genomes_project 4 1441059 1472483 - MGP_C3HHeJ_P0064232 Impad1 protein_coding protein_coding MGP_C3HHeJ_T0004474.1 MGP_C3HHeJ_G0003882.1 mouse_genomes_project 4 132993942 132994857 + Gm12999 antisense antisense MGP_C3HHeJ_T0004421.1 MGP_C3HHeJ_G0003842.1 mouse_genomes_project 4 107226496 107236148 + Gm12802 antisense antisense MGP_C3HHeJ_T0067787.1 MGP_C3HHeJ_G0028542.1 mouse_genomes_project 4 130514071 130514819 - Gm853 protein_coding processed_transcript MGP_C3HHeJ_T0067788.1 MGP_C3HHeJ_G0028542.1 mouse_genomes_project 4 130514071 130527371 - MGP_C3HHeJ_P0067788 Gm853 protein_coding protein_coding MGP_C3HHeJ_T0010500.1 MGP_C3HHeJ_G0008633.1 mouse_genomes_project 4 34299840 34299917 - Mir873a miRNA miRNA MGP_C3HHeJ_T0068896.1 MGP_C3HHeJ_G0028827.1 mouse_genomes_project 4 150461943 150467258 - MGP_C3HHeJ_P0068896 Angptl7 protein_coding protein_coding MGP_C3HHeJ_T0100645.1 MGP_C3HHeJ_G0038839.1 mouse_genomes_project 4 78548404 78548527 - Gm25836 snoRNA snoRNA MGP_C3HHeJ_T0065413.1 MGP_C3HHeJ_G0028002.1 mouse_genomes_project 4 52271196 52321016 + MGP_C3HHeJ_P0065413 Fktn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065414.1 MGP_C3HHeJ_G0028002.1 mouse_genomes_project 4 52271561 52319616 + MGP_C3HHeJ_P0065414 Fktn protein_coding protein_coding MGP_C3HHeJ_T0065560.1 MGP_C3HHeJ_G0028041.1 mouse_genomes_project 4 58581164 58686035 + MGP_C3HHeJ_P0065560 Snx30 protein_coding protein_coding MGP_C3HHeJ_T0065561.1 MGP_C3HHeJ_G0028041.1 mouse_genomes_project 4 58581204 58613969 + Snx30 protein_coding processed_transcript MGP_C3HHeJ_T0065562.1 MGP_C3HHeJ_G0028041.1 mouse_genomes_project 4 58665975 58681823 + Snx30 protein_coding processed_transcript MGP_C3HHeJ_T0065563.1 MGP_C3HHeJ_G0028041.1 mouse_genomes_project 4 58666061 58675847 + Snx30 protein_coding processed_transcript MGP_C3HHeJ_T0065865.1 MGP_C3HHeJ_G0028107.1 mouse_genomes_project 4 86078989 86080608 + MGP_C3HHeJ_P0065865 Rraga protein_coding protein_coding MGP_C3HHeJ_T0067217.1 MGP_C3HHeJ_G0028414.1 mouse_genomes_project 4 121513692 121514521 - MGP_C3HHeJ_P0067217 Exo5 protein_coding protein_coding MGP_C3HHeJ_T0067218.1 MGP_C3HHeJ_G0028414.1 mouse_genomes_project 4 121513692 121517469 - MGP_C3HHeJ_P0067218 Exo5 protein_coding protein_coding MGP_C3HHeJ_T0067219.1 MGP_C3HHeJ_G0028414.1 mouse_genomes_project 4 121513698 121517469 - MGP_C3HHeJ_P0067219 Exo5 protein_coding protein_coding MGP_C3HHeJ_T0067220.1 MGP_C3HHeJ_G0028414.1 mouse_genomes_project 4 121514765 121517481 - MGP_C3HHeJ_P0067220 Exo5 protein_coding protein_coding MGP_C3HHeJ_T0010561.1 MGP_C3HHeJ_G0008694.1 mouse_genomes_project 4 141790677 141790773 + Gm23045 miRNA miRNA MGP_C3HHeJ_T0066932.1 MGP_C3HHeJ_G0028344.1 mouse_genomes_project 4 117687578 117730746 - MGP_C3HHeJ_P0066932 Gm1661 protein_coding protein_coding MGP_C3HHeJ_T0066933.1 MGP_C3HHeJ_G0028344.1 mouse_genomes_project 4 117689444 117730746 - MGP_C3HHeJ_P0066933 Gm1661 protein_coding protein_coding MGP_C3HHeJ_T0066934.1 MGP_C3HHeJ_G0028344.1 mouse_genomes_project 4 117721710 117730954 - Gm1661 protein_coding processed_transcript MGP_C3HHeJ_T0017872.1 MGP_C3HHeJ_G0015338.1 mouse_genomes_project 4 127157231 127160501 + Gm12940 processed_transcript processed_transcript MGP_C3HHeJ_T0017873.1 MGP_C3HHeJ_G0015338.1 mouse_genomes_project 4 127158948 127160501 + Gm12940 processed_transcript processed_transcript MGP_C3HHeJ_T0017874.1 MGP_C3HHeJ_G0015338.1 mouse_genomes_project 4 127159168 127172885 + Gm12940 processed_transcript processed_transcript MGP_C3HHeJ_T0017875.1 MGP_C3HHeJ_G0015338.1 mouse_genomes_project 4 127159269 127160439 + Gm12940 processed_transcript processed_transcript MGP_C3HHeJ_T0064449.1 MGP_C3HHeJ_G0027783.1 mouse_genomes_project 4 16822274 16853805 + MGP_C3HHeJ_P0064449 Slc7a13 protein_coding protein_coding MGP_C3HHeJ_T0014291.1 MGP_C3HHeJ_G0012395.1 mouse_genomes_project 4 20598219 20599420 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014499.1 MGP_C3HHeJ_G0012603.1 mouse_genomes_project 4 98721714 98722134 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064637.1 MGP_C3HHeJ_G0027827.1 mouse_genomes_project 4 32207763 32232549 - MGP_C3HHeJ_P0064637 Slc35a1 protein_coding protein_coding MGP_C3HHeJ_T0064638.1 MGP_C3HHeJ_G0027827.1 mouse_genomes_project 4 32208385 32228581 - Slc35a1 protein_coding processed_transcript MGP_C3HHeJ_T0064639.1 MGP_C3HHeJ_G0027827.1 mouse_genomes_project 4 32213982 32228488 - MGP_C3HHeJ_P0064639 Slc35a1 protein_coding protein_coding MGP_C3HHeJ_T0064640.1 MGP_C3HHeJ_G0027827.1 mouse_genomes_project 4 32219877 32232366 - Slc35a1 protein_coding processed_transcript MGP_C3HHeJ_T0064641.1 MGP_C3HHeJ_G0027827.1 mouse_genomes_project 4 32228459 32232507 - Slc35a1 protein_coding processed_transcript MGP_C3HHeJ_T0004379.1 MGP_C3HHeJ_G0003811.1 mouse_genomes_project 4 44625591 44669747 - Gm12446 antisense antisense MGP_C3HHeJ_T0004380.1 MGP_C3HHeJ_G0003811.1 mouse_genomes_project 4 44654363 44671827 - Gm12446 antisense antisense MGP_C3HHeJ_T0065602.1 MGP_C3HHeJ_G0028055.1 mouse_genomes_project 4 61414080 61425291 - Alad protein_coding processed_transcript MGP_C3HHeJ_T0065603.1 MGP_C3HHeJ_G0028055.1 mouse_genomes_project 4 61414080 61425328 - MGP_C3HHeJ_P0065603 Alad protein_coding protein_coding MGP_C3HHeJ_T0065604.1 MGP_C3HHeJ_G0028055.1 mouse_genomes_project 4 61414080 61425304 - MGP_C3HHeJ_P0065604 Alad protein_coding protein_coding MGP_C3HHeJ_T0067642.1 MGP_C3HHeJ_G0028518.1 mouse_genomes_project 4 129666205 129681617 - MGP_C3HHeJ_P0067642 Zbtb8b protein_coding protein_coding MGP_C3HHeJ_T0067643.1 MGP_C3HHeJ_G0028518.1 mouse_genomes_project 4 129666205 129681582 - MGP_C3HHeJ_P0067643 Zbtb8b protein_coding protein_coding MGP_C3HHeJ_T0067644.1 MGP_C3HHeJ_G0028518.1 mouse_genomes_project 4 129666709 129672970 - Zbtb8b protein_coding processed_transcript MGP_C3HHeJ_T0067645.1 MGP_C3HHeJ_G0028518.1 mouse_genomes_project 4 129669585 129681584 - Zbtb8b protein_coding retained_intron MGP_C3HHeJ_T0066034.1 MGP_C3HHeJ_G0028158.1 mouse_genomes_project 4 96295540 96332914 - MGP_C3HHeJ_P0066034 Cyp2j6 protein_coding protein_coding MGP_C3HHeJ_T0014339.1 MGP_C3HHeJ_G0012443.1 mouse_genomes_project 4 32981214 32981648 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099365.1 MGP_C3HHeJ_G0037559.1 mouse_genomes_project 4 96718461 96718524 + Gm27579 snRNA snRNA MGP_C3HHeJ_T0100679.1 MGP_C3HHeJ_G0038873.1 mouse_genomes_project 4 132742543 132742617 + Snord99 snoRNA snoRNA MGP_C3HHeJ_T0067542.1 MGP_C3HHeJ_G0028498.1 mouse_genomes_project 4 128430622 128431368 - MGP_C3HHeJ_P0067542 Hmgb4 protein_coding protein_coding MGP_C3HHeJ_T0014321.1 MGP_C3HHeJ_G0012425.1 mouse_genomes_project 4 28077299 28077862 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066590.1 MGP_C3HHeJ_G0028271.1 mouse_genomes_project 4 110203227 110208865 + MGP_C3HHeJ_P0066590 Dmrta2 protein_coding protein_coding MGP_C3HHeJ_T0067349.1 MGP_C3HHeJ_G0028451.1 mouse_genomes_project 4 124859381 124860632 - protein_coding retained_intron MGP_C3HHeJ_T0067350.1 MGP_C3HHeJ_G0028451.1 mouse_genomes_project 4 124859786 124861111 - MGP_C3HHeJ_P0067350 protein_coding protein_coding MGP_C3HHeJ_T0067351.1 MGP_C3HHeJ_G0028451.1 mouse_genomes_project 4 124859786 124861032 - MGP_C3HHeJ_P0067351 protein_coding protein_coding MGP_C3HHeJ_T0067352.1 MGP_C3HHeJ_G0028451.1 mouse_genomes_project 4 124859787 124860963 - MGP_C3HHeJ_P0067352 protein_coding protein_coding MGP_C3HHeJ_T0067353.1 MGP_C3HHeJ_G0028451.1 mouse_genomes_project 4 124859791 124861509 - MGP_C3HHeJ_P0067353 protein_coding protein_coding MGP_C3HHeJ_T0067354.1 MGP_C3HHeJ_G0028451.1 mouse_genomes_project 4 124859847 124860775 - MGP_C3HHeJ_P0067354 protein_coding protein_coding MGP_C3HHeJ_T0068504.1 MGP_C3HHeJ_G0028706.1 mouse_genomes_project 4 139946659 139964799 + MGP_C3HHeJ_P0068504 Tmco4 protein_coding protein_coding MGP_C3HHeJ_T0068505.1 MGP_C3HHeJ_G0028706.1 mouse_genomes_project 4 139946663 140035947 + MGP_C3HHeJ_P0068505 Tmco4 protein_coding protein_coding MGP_C3HHeJ_T0068506.1 MGP_C3HHeJ_G0028706.1 mouse_genomes_project 4 139946676 140035943 + MGP_C3HHeJ_P0068506 Tmco4 protein_coding protein_coding MGP_C3HHeJ_T0068507.1 MGP_C3HHeJ_G0028706.1 mouse_genomes_project 4 139946680 140008810 + Tmco4 protein_coding processed_transcript MGP_C3HHeJ_T0067482.1 MGP_C3HHeJ_G0028482.1 mouse_genomes_project 4 126826153 126847177 - MGP_C3HHeJ_P0067482 protein_coding protein_coding MGP_C3HHeJ_T0014384.1 MGP_C3HHeJ_G0012488.1 mouse_genomes_project 4 51361710 51362999 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069137.1 MGP_C3HHeJ_G0028871.1 mouse_genomes_project 4 154204983 154216277 - MGP_C3HHeJ_P0069137 Tas1r1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069138.1 MGP_C3HHeJ_G0028871.1 mouse_genomes_project 4 154204992 154217431 - MGP_C3HHeJ_P0069138 Tas1r1 protein_coding protein_coding MGP_C3HHeJ_T0014328.1 MGP_C3HHeJ_G0012432.1 mouse_genomes_project 4 30335079 30335689 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010491.1 MGP_C3HHeJ_G0008624.1 mouse_genomes_project 4 12833318 12833410 - Mir6400 miRNA miRNA MGP_C3HHeJ_T0065564.1 MGP_C3HHeJ_G0028042.1 mouse_genomes_project 4 58686406 58696345 - MGP_C3HHeJ_P0065564 Slc46a2 protein_coding protein_coding MGP_C3HHeJ_T0067736.1 MGP_C3HHeJ_G0028534.1 mouse_genomes_project 4 129969785 130008104 - MGP_C3HHeJ_P0067736 Khdrbs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067737.1 MGP_C3HHeJ_G0028534.1 mouse_genomes_project 4 129970444 129980456 - Khdrbs1 protein_coding retained_intron MGP_C3HHeJ_T0067738.1 MGP_C3HHeJ_G0028534.1 mouse_genomes_project 4 129980454 130008103 - MGP_C3HHeJ_P0067738 Khdrbs1 protein_coding protein_coding MGP_C3HHeJ_T0067739.1 MGP_C3HHeJ_G0028534.1 mouse_genomes_project 4 129995087 130008110 - Khdrbs1 protein_coding retained_intron MGP_C3HHeJ_T0004430.1 MGP_C3HHeJ_G0003847.1 mouse_genomes_project 4 109601659 109602078 - Ttc39aos1 antisense antisense MGP_C3HHeJ_T0004431.1 MGP_C3HHeJ_G0003847.1 mouse_genomes_project 4 109601674 109604021 - Ttc39aos1 antisense antisense MGP_C3HHeJ_T0065160.1 MGP_C3HHeJ_G0027935.1 mouse_genomes_project 4 43003261 43010884 + MGP_C3HHeJ_P0065160 Zcchc7 protein_coding protein_coding MGP_C3HHeJ_T0065161.1 MGP_C3HHeJ_G0027935.1 mouse_genomes_project 4 43003952 43186195 + MGP_C3HHeJ_P0065161 Zcchc7 protein_coding protein_coding MGP_C3HHeJ_T0065162.1 MGP_C3HHeJ_G0027935.1 mouse_genomes_project 4 43003972 43164050 + Zcchc7 protein_coding retained_intron MGP_C3HHeJ_T0065163.1 MGP_C3HHeJ_G0027935.1 mouse_genomes_project 4 43004023 43011141 + MGP_C3HHeJ_P0065163 Zcchc7 protein_coding protein_coding MGP_C3HHeJ_T0065164.1 MGP_C3HHeJ_G0027935.1 mouse_genomes_project 4 43004031 43162869 + MGP_C3HHeJ_P0065164 Zcchc7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065165.1 MGP_C3HHeJ_G0027935.1 mouse_genomes_project 4 43009356 43165112 + Zcchc7 protein_coding retained_intron MGP_C3HHeJ_T0065166.1 MGP_C3HHeJ_G0027935.1 mouse_genomes_project 4 43160254 43185354 + Zcchc7 protein_coding processed_transcript MGP_C3HHeJ_T0065167.1 MGP_C3HHeJ_G0027935.1 mouse_genomes_project 4 43176170 43186207 + MGP_C3HHeJ_P0065167 Zcchc7 protein_coding protein_coding MGP_C3HHeJ_T0065168.1 MGP_C3HHeJ_G0027935.1 mouse_genomes_project 4 43179044 43185354 + MGP_C3HHeJ_P0065168 Zcchc7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0004529.1 MGP_C3HHeJ_G0003924.1 mouse_genomes_project 4 152964676 152991381 - 1700045H11Rik antisense antisense MGP_C3HHeJ_T0100605.1 MGP_C3HHeJ_G0038799.1 mouse_genomes_project 4 11112342 11112469 + Gm24908 snoRNA snoRNA MGP_C3HHeJ_T0100685.1 MGP_C3HHeJ_G0038879.1 mouse_genomes_project 4 156139585 156139717 + Gm25880 snoRNA snoRNA MGP_C3HHeJ_T0098137.1 MGP_C3HHeJ_G0036349.1 mouse_genomes_project 4 124830120 124830239 + n-R5s192 rRNA rRNA MGP_C3HHeJ_T0098132.1 MGP_C3HHeJ_G0036344.1 mouse_genomes_project 4 57612771 57612856 + Gm26400 rRNA rRNA MGP_C3HHeJ_T0014269.1 MGP_C3HHeJ_G0012373.1 mouse_genomes_project 4 13977874 13978847 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066557.1 MGP_C3HHeJ_G0028264.1 mouse_genomes_project 4 109414574 109454571 + MGP_C3HHeJ_P0066557 Calr4 protein_coding protein_coding MGP_C3HHeJ_T0066558.1 MGP_C3HHeJ_G0028264.1 mouse_genomes_project 4 109434927 109454821 + MGP_C3HHeJ_P0066558 Calr4 protein_coding protein_coding MGP_C3HHeJ_T0066559.1 MGP_C3HHeJ_G0028264.1 mouse_genomes_project 4 109436074 109454821 + MGP_C3HHeJ_P0066559 Calr4 protein_coding protein_coding MGP_C3HHeJ_T0066560.1 MGP_C3HHeJ_G0028264.1 mouse_genomes_project 4 109445021 109454393 + Calr4 protein_coding processed_transcript MGP_C3HHeJ_T0065428.1 MGP_C3HHeJ_G0028007.1 mouse_genomes_project 4 54099565 54105373 - MGP_C3HHeJ_P0065428 Klf4 protein_coding protein_coding MGP_C3HHeJ_T0065429.1 MGP_C3HHeJ_G0028007.1 mouse_genomes_project 4 54102427 54103595 - MGP_C3HHeJ_P0065429 Klf4 protein_coding protein_coding MGP_C3HHeJ_T0065430.1 MGP_C3HHeJ_G0028007.1 mouse_genomes_project 4 54102536 54105360 - MGP_C3HHeJ_P0065430 Klf4 protein_coding protein_coding MGP_C3HHeJ_T0065879.1 MGP_C3HHeJ_G0028110.1 mouse_genomes_project 4 86297528 86399277 + MGP_C3HHeJ_P0065879 Dennd4c protein_coding protein_coding MGP_C3HHeJ_T0065880.1 MGP_C3HHeJ_G0028110.1 mouse_genomes_project 4 86297528 86376738 + MGP_C3HHeJ_P0065880 Dennd4c protein_coding protein_coding MGP_C3HHeJ_T0065881.1 MGP_C3HHeJ_G0028110.1 mouse_genomes_project 4 86297709 86398226 + MGP_C3HHeJ_P0065881 Dennd4c protein_coding unknown_likely_coding MGP_C3HHeJ_T0065882.1 MGP_C3HHeJ_G0028110.1 mouse_genomes_project 4 86317610 86398390 + MGP_C3HHeJ_P0065882 Dennd4c protein_coding protein_coding MGP_C3HHeJ_T0065883.1 MGP_C3HHeJ_G0028110.1 mouse_genomes_project 4 86321269 86325196 + Dennd4c protein_coding processed_transcript MGP_C3HHeJ_T0068456.1 MGP_C3HHeJ_G0028689.1 mouse_genomes_project 4 139159226 139214061 + MGP_C3HHeJ_P0068456 Kif17 protein_coding protein_coding MGP_C3HHeJ_T0068459.1 MGP_C3HHeJ_G0028689.1 mouse_genomes_project 4 139171884 139213586 + MGP_C3HHeJ_P0068459 Kif17 protein_coding protein_coding MGP_C3HHeJ_T0068460.1 MGP_C3HHeJ_G0028689.1 mouse_genomes_project 4 139172124 139213476 + MGP_C3HHeJ_P0068460 Kif17 protein_coding protein_coding MGP_C3HHeJ_T0068461.1 MGP_C3HHeJ_G0028689.1 mouse_genomes_project 4 139172151 139196760 + Kif17 protein_coding retained_intron MGP_C3HHeJ_T0066160.1 MGP_C3HHeJ_G0028187.1 mouse_genomes_project 4 101421256 101536394 + MGP_C3HHeJ_P0066160 Dnajc6 protein_coding protein_coding MGP_C3HHeJ_T0066161.1 MGP_C3HHeJ_G0028187.1 mouse_genomes_project 4 101432389 101573182 + MGP_C3HHeJ_P0066161 Dnajc6 protein_coding protein_coding MGP_C3HHeJ_T0066162.1 MGP_C3HHeJ_G0028187.1 mouse_genomes_project 4 101432494 101541744 + MGP_C3HHeJ_P0066162 Dnajc6 protein_coding protein_coding MGP_C3HHeJ_T0066163.1 MGP_C3HHeJ_G0028187.1 mouse_genomes_project 4 101432548 101527917 + Dnajc6 protein_coding processed_transcript MGP_C3HHeJ_T0066164.1 MGP_C3HHeJ_G0028187.1 mouse_genomes_project 4 101475546 101573190 + MGP_C3HHeJ_P0066164 Dnajc6 protein_coding protein_coding MGP_C3HHeJ_T0014490.1 MGP_C3HHeJ_G0012594.1 mouse_genomes_project 4 94140648 94141236 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014579.1 MGP_C3HHeJ_G0012683.1 mouse_genomes_project 4 121971852 121972180 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069280.1 MGP_C3HHeJ_G0028894.1 mouse_genomes_project 4 156420323 156436973 + MGP_C3HHeJ_P0069280 Wrap73 protein_coding protein_coding MGP_C3HHeJ_T0069281.1 MGP_C3HHeJ_G0028894.1 mouse_genomes_project 4 156420360 156436973 + Wrap73 protein_coding processed_transcript MGP_C3HHeJ_T0069282.1 MGP_C3HHeJ_G0028894.1 mouse_genomes_project 4 156430395 156435437 + MGP_C3HHeJ_P0069282 Wrap73 protein_coding protein_coding MGP_C3HHeJ_T0069283.1 MGP_C3HHeJ_G0028894.1 mouse_genomes_project 4 156435371 156450342 + Wrap73 protein_coding processed_transcript MGP_C3HHeJ_T0017878.1 MGP_C3HHeJ_G0015340.1 mouse_genomes_project 4 132783371 132790980 - Snhg3 processed_transcript processed_transcript MGP_C3HHeJ_T0017879.1 MGP_C3HHeJ_G0015340.1 mouse_genomes_project 4 132789247 132791003 - Snhg3 processed_transcript processed_transcript MGP_C3HHeJ_T0017880.1 MGP_C3HHeJ_G0015340.1 mouse_genomes_project 4 132789248 132790250 - Snhg3 processed_transcript processed_transcript MGP_C3HHeJ_T0017881.1 MGP_C3HHeJ_G0015340.1 mouse_genomes_project 4 132789248 132790950 - Snhg3 processed_transcript processed_transcript MGP_C3HHeJ_T0017882.1 MGP_C3HHeJ_G0015340.1 mouse_genomes_project 4 132789318 132790653 - Snhg3 processed_transcript processed_transcript MGP_C3HHeJ_T0014612.1 MGP_C3HHeJ_G0012716.1 mouse_genomes_project 4 133363904 133365768 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014308.1 MGP_C3HHeJ_G0012412.1 mouse_genomes_project 4 24763477 24763914 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068482.1 MGP_C3HHeJ_G0028698.1 mouse_genomes_project 4 139682102 139704595 + MGP_C3HHeJ_P0068482 Pla2g2c protein_coding protein_coding MGP_C3HHeJ_T0068483.1 MGP_C3HHeJ_G0028698.1 mouse_genomes_project 4 139682634 139702156 + MGP_C3HHeJ_P0068483 Pla2g2c protein_coding protein_coding MGP_C3HHeJ_T0068484.1 MGP_C3HHeJ_G0028698.1 mouse_genomes_project 4 139682634 139703037 + MGP_C3HHeJ_P0068484 Pla2g2c protein_coding protein_coding MGP_C3HHeJ_T0014229.1 MGP_C3HHeJ_G0012333.1 mouse_genomes_project 4 2718008 2718762 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007889.1 MGP_C3HHeJ_G0006437.1 mouse_genomes_project 4 131115427 131117214 + Gm12972 lincRNA lincRNA MGP_C3HHeJ_T0014297.1 MGP_C3HHeJ_G0012401.1 mouse_genomes_project 4 22488434 22489262 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067996.1 MGP_C3HHeJ_G0028586.1 mouse_genomes_project 4 133756788 133766833 - MGP_C3HHeJ_P0067996 Sytl1 protein_coding protein_coding MGP_C3HHeJ_T0067997.1 MGP_C3HHeJ_G0028586.1 mouse_genomes_project 4 133756788 133766807 - MGP_C3HHeJ_P0067997 Sytl1 protein_coding protein_coding MGP_C3HHeJ_T0067998.1 MGP_C3HHeJ_G0028586.1 mouse_genomes_project 4 133756796 133766807 - Sytl1 protein_coding processed_transcript MGP_C3HHeJ_T0067999.1 MGP_C3HHeJ_G0028586.1 mouse_genomes_project 4 133756859 133766772 - Sytl1 protein_coding processed_transcript MGP_C3HHeJ_T0007908.1 MGP_C3HHeJ_G0006448.1 mouse_genomes_project 4 133583173 133586353 + Gm26615 lincRNA lincRNA MGP_C3HHeJ_T0004437.1 MGP_C3HHeJ_G0003852.1 mouse_genomes_project 4 116949492 116951132 + antisense antisense MGP_C3HHeJ_T0014235.1 MGP_C3HHeJ_G0012339.1 mouse_genomes_project 4 5137133 5137465 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007899.1 MGP_C3HHeJ_G0006445.1 mouse_genomes_project 4 132696740 132696898 + Gm28872 lincRNA lincRNA MGP_C3HHeJ_T0067402.1 MGP_C3HHeJ_G0028466.1 mouse_genomes_project 4 126147551 126149512 + MGP_C3HHeJ_P0067402 Lsm10 protein_coding protein_coding MGP_C3HHeJ_T0067403.1 MGP_C3HHeJ_G0028466.1 mouse_genomes_project 4 126147581 126149509 + MGP_C3HHeJ_P0067403 Lsm10 protein_coding protein_coding MGP_C3HHeJ_T0067404.1 MGP_C3HHeJ_G0028466.1 mouse_genomes_project 4 126147588 126149061 + MGP_C3HHeJ_P0067404 Lsm10 protein_coding protein_coding MGP_C3HHeJ_T0064727.1 MGP_C3HHeJ_G0027850.1 mouse_genomes_project 4 38913527 38968647 + MGP_C3HHeJ_P0064727 Nfx1 protein_coding protein_coding MGP_C3HHeJ_T0064728.1 MGP_C3HHeJ_G0027850.1 mouse_genomes_project 4 38913527 38955289 + MGP_C3HHeJ_P0064728 Nfx1 protein_coding protein_coding MGP_C3HHeJ_T0064729.1 MGP_C3HHeJ_G0027850.1 mouse_genomes_project 4 38913527 38956552 + MGP_C3HHeJ_P0064729 Nfx1 protein_coding protein_coding MGP_C3HHeJ_T0064730.1 MGP_C3HHeJ_G0027850.1 mouse_genomes_project 4 38945188 38954850 + Nfx1 protein_coding processed_transcript MGP_C3HHeJ_T0064731.1 MGP_C3HHeJ_G0027850.1 mouse_genomes_project 4 38951887 38964978 + Nfx1 protein_coding processed_transcript MGP_C3HHeJ_T0064732.1 MGP_C3HHeJ_G0027850.1 mouse_genomes_project 4 38964022 38967832 + Nfx1 protein_coding processed_transcript MGP_C3HHeJ_T0064733.1 MGP_C3HHeJ_G0027850.1 mouse_genomes_project 4 38965857 38967194 + Nfx1 protein_coding processed_transcript MGP_C3HHeJ_T0064188.1 MGP_C3HHeJ_G0027721.1 mouse_genomes_project 4 170084 197141 - MGP_C3HHeJ_P0064188 Tmem68 protein_coding protein_coding MGP_C3HHeJ_T0064189.1 MGP_C3HHeJ_G0027721.1 mouse_genomes_project 4 170084 197097 - MGP_C3HHeJ_P0064189 Tmem68 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064190.1 MGP_C3HHeJ_G0027721.1 mouse_genomes_project 4 171371 173218 - Tmem68 protein_coding retained_intron MGP_C3HHeJ_T0064191.1 MGP_C3HHeJ_G0027721.1 mouse_genomes_project 4 190890 197092 - Tmem68 protein_coding retained_intron MGP_C3HHeJ_T0064192.1 MGP_C3HHeJ_G0027721.1 mouse_genomes_project 4 190909 197092 - Tmem68 protein_coding processed_transcript MGP_C3HHeJ_T0064193.1 MGP_C3HHeJ_G0027721.1 mouse_genomes_project 4 191084 196021 - MGP_C3HHeJ_P0064193 Tmem68 protein_coding protein_coding MGP_C3HHeJ_T0007707.1 MGP_C3HHeJ_G0006295.1 mouse_genomes_project 4 319056 332425 - Gm26857 lincRNA lincRNA MGP_C3HHeJ_T0067731.1 MGP_C3HHeJ_G0028533.1 mouse_genomes_project 4 129942754 129963403 - MGP_C3HHeJ_P0067731 Tmem39b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067732.1 MGP_C3HHeJ_G0028533.1 mouse_genomes_project 4 129942754 129963445 - MGP_C3HHeJ_P0067732 Tmem39b protein_coding protein_coding MGP_C3HHeJ_T0067733.1 MGP_C3HHeJ_G0028533.1 mouse_genomes_project 4 129942998 129945336 - Tmem39b protein_coding retained_intron MGP_C3HHeJ_T0067734.1 MGP_C3HHeJ_G0028533.1 mouse_genomes_project 4 129958679 129963227 - MGP_C3HHeJ_P0067734 Tmem39b protein_coding protein_coding MGP_C3HHeJ_T0067735.1 MGP_C3HHeJ_G0028533.1 mouse_genomes_project 4 129958755 129963351 - MGP_C3HHeJ_P0067735 Tmem39b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067344.1 MGP_C3HHeJ_G0028450.1 mouse_genomes_project 4 124811670 124859681 + MGP_C3HHeJ_P0067344 Mtf1 protein_coding protein_coding MGP_C3HHeJ_T0067345.1 MGP_C3HHeJ_G0028450.1 mouse_genomes_project 4 124812115 124860102 + MGP_C3HHeJ_P0067345 Mtf1 protein_coding protein_coding MGP_C3HHeJ_T0067346.1 MGP_C3HHeJ_G0028450.1 mouse_genomes_project 4 124812115 124829527 + MGP_C3HHeJ_P0067346 Mtf1 protein_coding protein_coding MGP_C3HHeJ_T0067347.1 MGP_C3HHeJ_G0028450.1 mouse_genomes_project 4 124812148 124814902 + Mtf1 protein_coding retained_intron MGP_C3HHeJ_T0067348.1 MGP_C3HHeJ_G0028450.1 mouse_genomes_project 4 124812244 124814264 + MGP_C3HHeJ_P0067348 Mtf1 protein_coding protein_coding MGP_C3HHeJ_T0066134.1 MGP_C3HHeJ_G0028180.1 mouse_genomes_project 4 100003718 100370741 + MGP_C3HHeJ_P0066134 Ror1 protein_coding protein_coding MGP_C3HHeJ_T0068934.1 MGP_C3HHeJ_G0028832.1 mouse_genomes_project 4 150618997 150653151 + MGP_C3HHeJ_P0068934 Gm572 protein_coding protein_coding MGP_C3HHeJ_T0099346.1 MGP_C3HHeJ_G0037540.1 mouse_genomes_project 4 42294964 42295076 - Gm22706 snRNA snRNA MGP_C3HHeJ_T0064618.1 MGP_C3HHeJ_G0027824.1 mouse_genomes_project 4 32092884 32109045 + MGP_C3HHeJ_P0064618 Akirin2 protein_coding protein_coding MGP_C3HHeJ_T0064619.1 MGP_C3HHeJ_G0027824.1 mouse_genomes_project 4 32092898 32104906 + Akirin2 protein_coding processed_transcript MGP_C3HHeJ_T0067595.1 MGP_C3HHeJ_G0028509.1 mouse_genomes_project 4 129321412 129331834 - MGP_C3HHeJ_P0067595 Hpca protein_coding protein_coding MGP_C3HHeJ_T0067596.1 MGP_C3HHeJ_G0028509.1 mouse_genomes_project 4 129321413 129328765 - MGP_C3HHeJ_P0067596 Hpca protein_coding protein_coding MGP_C3HHeJ_T0067597.1 MGP_C3HHeJ_G0028509.1 mouse_genomes_project 4 129321419 129331538 - MGP_C3HHeJ_P0067597 Hpca protein_coding protein_coding MGP_C3HHeJ_T0067598.1 MGP_C3HHeJ_G0028509.1 mouse_genomes_project 4 129321419 129331089 - MGP_C3HHeJ_P0067598 Hpca protein_coding protein_coding MGP_C3HHeJ_T0067599.1 MGP_C3HHeJ_G0028509.1 mouse_genomes_project 4 129322103 129330744 - MGP_C3HHeJ_P0067599 Hpca protein_coding protein_coding MGP_C3HHeJ_T0067600.1 MGP_C3HHeJ_G0028509.1 mouse_genomes_project 4 129322117 129331687 - MGP_C3HHeJ_P0067600 Hpca protein_coding protein_coding MGP_C3HHeJ_T0067601.1 MGP_C3HHeJ_G0028509.1 mouse_genomes_project 4 129322292 129331723 - MGP_C3HHeJ_P0067601 Hpca protein_coding protein_coding MGP_C3HHeJ_T0067602.1 MGP_C3HHeJ_G0028509.1 mouse_genomes_project 4 129322483 129331537 - MGP_C3HHeJ_P0067602 Hpca protein_coding protein_coding MGP_C3HHeJ_T0067603.1 MGP_C3HHeJ_G0028509.1 mouse_genomes_project 4 129328402 129331506 - MGP_C3HHeJ_P0067603 Hpca protein_coding protein_coding MGP_C3HHeJ_T0065280.1 MGP_C3HHeJ_G0027963.1 mouse_genomes_project 4 44991494 45338254 - MGP_C3HHeJ_P0065280 Gabbr2 protein_coding protein_coding MGP_C3HHeJ_T0065281.1 MGP_C3HHeJ_G0027963.1 mouse_genomes_project 4 44993697 45019308 - Gabbr2 protein_coding processed_transcript MGP_C3HHeJ_T0065282.1 MGP_C3HHeJ_G0027963.1 mouse_genomes_project 4 45008368 45056527 - MGP_C3HHeJ_P0065282 Gabbr2 protein_coding protein_coding MGP_C3HHeJ_T0065283.1 MGP_C3HHeJ_G0027963.1 mouse_genomes_project 4 45139504 45201486 - Gabbr2 protein_coding processed_transcript MGP_C3HHeJ_T0004383.1 MGP_C3HHeJ_G0003814.1 mouse_genomes_project 4 51796998 51801914 + 4930522O17Rik antisense antisense MGP_C3HHeJ_T0014486.1 MGP_C3HHeJ_G0012590.1 mouse_genomes_project 4 92849941 92852868 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100665.1 MGP_C3HHeJ_G0038859.1 mouse_genomes_project 4 122098820 122098952 + Gm26162 snoRNA snoRNA MGP_C3HHeJ_T0066241.1 MGP_C3HHeJ_G0028203.1 mouse_genomes_project 4 103238846 103294706 - MGP_C3HHeJ_P0066241 4921539E11Rik protein_coding protein_coding MGP_C3HHeJ_T0066242.1 MGP_C3HHeJ_G0028203.1 mouse_genomes_project 4 103238846 103294706 - MGP_C3HHeJ_P0066242 4921539E11Rik protein_coding protein_coding MGP_C3HHeJ_T0066243.1 MGP_C3HHeJ_G0028203.1 mouse_genomes_project 4 103244206 103294706 - MGP_C3HHeJ_P0066243 4921539E11Rik protein_coding protein_coding MGP_C3HHeJ_T0067554.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128840485 128946525 + MGP_C3HHeJ_P0067554 Phc2 protein_coding protein_coding MGP_C3HHeJ_T0067555.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128840521 128902658 + MGP_C3HHeJ_P0067555 Phc2 protein_coding protein_coding MGP_C3HHeJ_T0067556.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128876007 128896127 + Phc2 protein_coding retained_intron MGP_C3HHeJ_T0067557.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128876064 128946525 + MGP_C3HHeJ_P0067557 Phc2 protein_coding protein_coding MGP_C3HHeJ_T0067558.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128900627 128917502 + Phc2 protein_coding retained_intron MGP_C3HHeJ_T0067559.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128920657 128946525 + MGP_C3HHeJ_P0067559 Phc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067560.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128920661 128946525 + MGP_C3HHeJ_P0067560 Phc2 protein_coding protein_coding MGP_C3HHeJ_T0067561.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128920758 128941865 + MGP_C3HHeJ_P0067561 Phc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067562.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128920786 128938662 + MGP_C3HHeJ_P0067562 Phc2 protein_coding protein_coding MGP_C3HHeJ_T0067563.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128921009 128941722 + MGP_C3HHeJ_P0067563 Phc2 protein_coding protein_coding MGP_C3HHeJ_T0067564.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128921047 128937125 + MGP_C3HHeJ_P0067564 Phc2 protein_coding protein_coding MGP_C3HHeJ_T0067565.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128921058 128940780 + MGP_C3HHeJ_P0067565 Phc2 protein_coding protein_coding MGP_C3HHeJ_T0064457.1 MGP_C3HHeJ_G0027788.1 mouse_genomes_project 4 18725211 18733695 - Prdm13 protein_coding processed_transcript MGP_C3HHeJ_T0064458.1 MGP_C3HHeJ_G0027788.1 mouse_genomes_project 4 18725212 18733695 - MGP_C3HHeJ_P0064458 Prdm13 protein_coding protein_coding MGP_C3HHeJ_T0064459.1 MGP_C3HHeJ_G0027788.1 mouse_genomes_project 4 18725212 18733515 - MGP_C3HHeJ_P0064459 Prdm13 protein_coding protein_coding MGP_C3HHeJ_T0064460.1 MGP_C3HHeJ_G0027788.1 mouse_genomes_project 4 18727396 18733515 - Prdm13 protein_coding processed_transcript MGP_C3HHeJ_T0064461.1 MGP_C3HHeJ_G0027788.1 mouse_genomes_project 4 18727478 18733513 - Prdm13 protein_coding processed_transcript MGP_C3HHeJ_T0064462.1 MGP_C3HHeJ_G0027788.1 mouse_genomes_project 4 18730028 18733577 - Prdm13 protein_coding retained_intron MGP_C3HHeJ_T0017842.1 MGP_C3HHeJ_G0015319.1 mouse_genomes_project 4 94774275 94792691 - Gm12703 processed_transcript processed_transcript MGP_C3HHeJ_T0010497.1 MGP_C3HHeJ_G0008630.1 mouse_genomes_project 4 30929043 30929172 + Mir8118 miRNA miRNA MGP_C3HHeJ_T0004461.1 MGP_C3HHeJ_G0003872.1 mouse_genomes_project 4 125104460 125107211 - Gm12932 antisense antisense MGP_C3HHeJ_T0004452.1 MGP_C3HHeJ_G0003866.1 mouse_genomes_project 4 123613022 123615867 + Gm12925 antisense antisense MGP_C3HHeJ_T0004453.1 MGP_C3HHeJ_G0003866.1 mouse_genomes_project 4 123614595 123618348 + Gm12925 antisense antisense MGP_C3HHeJ_T0004454.1 MGP_C3HHeJ_G0003866.1 mouse_genomes_project 4 123614757 123618355 + Gm12925 antisense antisense MGP_C3HHeJ_T0068789.1 MGP_C3HHeJ_G0028792.1 mouse_genomes_project 4 145931346 145957093 - MGP_C3HHeJ_P0068789 1700012P22Rik protein_coding protein_coding MGP_C3HHeJ_T0067831.1 MGP_C3HHeJ_G0028553.1 mouse_genomes_project 4 132155042 132229665 - MGP_C3HHeJ_P0067831 Ptpru protein_coding unknown_likely_coding MGP_C3HHeJ_T0067832.1 MGP_C3HHeJ_G0028553.1 mouse_genomes_project 4 132155046 132229797 - MGP_C3HHeJ_P0067832 Ptpru protein_coding protein_coding MGP_C3HHeJ_T0067833.1 MGP_C3HHeJ_G0028553.1 mouse_genomes_project 4 132155047 132155511 - Ptpru protein_coding processed_transcript MGP_C3HHeJ_T0067834.1 MGP_C3HHeJ_G0028553.1 mouse_genomes_project 4 132156087 132229740 - MGP_C3HHeJ_P0067834 Ptpru protein_coding protein_coding MGP_C3HHeJ_T0067835.1 MGP_C3HHeJ_G0028553.1 mouse_genomes_project 4 132158725 132229761 - Ptpru protein_coding processed_transcript MGP_C3HHeJ_T0067836.1 MGP_C3HHeJ_G0028553.1 mouse_genomes_project 4 132171994 132213016 - MGP_C3HHeJ_P0067836 Ptpru protein_coding protein_coding MGP_C3HHeJ_T0067837.1 MGP_C3HHeJ_G0028553.1 mouse_genomes_project 4 132177298 132192501 - Ptpru protein_coding processed_transcript MGP_C3HHeJ_T0067838.1 MGP_C3HHeJ_G0028553.1 mouse_genomes_project 4 132183285 132188057 - Ptpru protein_coding retained_intron MGP_C3HHeJ_T0067839.1 MGP_C3HHeJ_G0028553.1 mouse_genomes_project 4 132189244 132193125 - Ptpru protein_coding retained_intron MGP_C3HHeJ_T0067336.1 MGP_C3HHeJ_G0028449.1 mouse_genomes_project 4 124746609 124811078 + MGP_C3HHeJ_P0067336 Inpp5b protein_coding protein_coding MGP_C3HHeJ_T0067337.1 MGP_C3HHeJ_G0028449.1 mouse_genomes_project 4 124746617 124756241 + MGP_C3HHeJ_P0067337 Inpp5b protein_coding protein_coding MGP_C3HHeJ_T0067338.1 MGP_C3HHeJ_G0028449.1 mouse_genomes_project 4 124746631 124811072 + MGP_C3HHeJ_P0067338 Inpp5b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067339.1 MGP_C3HHeJ_G0028449.1 mouse_genomes_project 4 124746637 124756203 + MGP_C3HHeJ_P0067339 Inpp5b protein_coding protein_coding MGP_C3HHeJ_T0067340.1 MGP_C3HHeJ_G0028449.1 mouse_genomes_project 4 124774302 124789827 + Inpp5b protein_coding processed_transcript MGP_C3HHeJ_T0067341.1 MGP_C3HHeJ_G0028449.1 mouse_genomes_project 4 124774408 124789880 + Inpp5b protein_coding processed_transcript MGP_C3HHeJ_T0067342.1 MGP_C3HHeJ_G0028449.1 mouse_genomes_project 4 124803765 124806488 + Inpp5b protein_coding processed_transcript MGP_C3HHeJ_T0067343.1 MGP_C3HHeJ_G0028449.1 mouse_genomes_project 4 124809114 124810677 + Inpp5b protein_coding processed_transcript MGP_C3HHeJ_T0068819.1 MGP_C3HHeJ_G0028807.1 mouse_genomes_project 4 149511521 149519467 - MGP_C3HHeJ_P0068819 protein_coding protein_coding MGP_C3HHeJ_T0007800.1 MGP_C3HHeJ_G0006373.1 mouse_genomes_project 4 84175075 84175892 + Gm12415 lincRNA lincRNA MGP_C3HHeJ_T0066040.1 MGP_C3HHeJ_G0028163.1 mouse_genomes_project 4 97379213 97396188 - E130114P18Rik protein_coding processed_transcript MGP_C3HHeJ_T0066041.1 MGP_C3HHeJ_G0028163.1 mouse_genomes_project 4 97379213 97396164 - E130114P18Rik protein_coding processed_transcript MGP_C3HHeJ_T0066042.1 MGP_C3HHeJ_G0028163.1 mouse_genomes_project 4 97379213 97396204 - E130114P18Rik protein_coding processed_transcript MGP_C3HHeJ_T0066043.1 MGP_C3HHeJ_G0028163.1 mouse_genomes_project 4 97379213 97396175 - MGP_C3HHeJ_P0066043 E130114P18Rik protein_coding protein_coding MGP_C3HHeJ_T0066044.1 MGP_C3HHeJ_G0028163.1 mouse_genomes_project 4 97379213 97596367 - MGP_C3HHeJ_P0066044 E130114P18Rik protein_coding protein_coding MGP_C3HHeJ_T0066045.1 MGP_C3HHeJ_G0028163.1 mouse_genomes_project 4 97379213 97396197 - MGP_C3HHeJ_P0066045 E130114P18Rik protein_coding protein_coding MGP_C3HHeJ_T0066046.1 MGP_C3HHeJ_G0028163.1 mouse_genomes_project 4 97380270 97505482 - MGP_C3HHeJ_P0066046 E130114P18Rik protein_coding protein_coding MGP_C3HHeJ_T0066047.1 MGP_C3HHeJ_G0028163.1 mouse_genomes_project 4 97386655 97396180 - E130114P18Rik protein_coding processed_transcript MGP_C3HHeJ_T0066048.1 MGP_C3HHeJ_G0028163.1 mouse_genomes_project 4 97494015 97596397 - E130114P18Rik protein_coding processed_transcript MGP_C3HHeJ_T0068275.1 MGP_C3HHeJ_G0028651.1 mouse_genomes_project 4 136672088 136690544 + MGP_C3HHeJ_P0068275 Hmgcl protein_coding protein_coding MGP_C3HHeJ_T0068276.1 MGP_C3HHeJ_G0028651.1 mouse_genomes_project 4 136672105 136688839 + Hmgcl protein_coding processed_transcript MGP_C3HHeJ_T0068277.1 MGP_C3HHeJ_G0028651.1 mouse_genomes_project 4 136674194 136686472 + Hmgcl protein_coding processed_transcript MGP_C3HHeJ_T0068278.1 MGP_C3HHeJ_G0028651.1 mouse_genomes_project 4 136687455 136690544 + Hmgcl protein_coding processed_transcript MGP_C3HHeJ_T0068279.1 MGP_C3HHeJ_G0028651.1 mouse_genomes_project 4 136688262 136690143 + Hmgcl protein_coding processed_transcript MGP_C3HHeJ_T0017862.1 MGP_C3HHeJ_G0015334.1 mouse_genomes_project 4 122848241 122850434 + 4933421A08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0010499.1 MGP_C3HHeJ_G0008632.1 mouse_genomes_project 4 34299840 34299917 + Mir873b miRNA miRNA MGP_C3HHeJ_T0065360.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48123652 48130349 + MGP_C3HHeJ_P0065360 Rnf20 protein_coding protein_coding MGP_C3HHeJ_T0065361.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48123706 48148517 + MGP_C3HHeJ_P0065361 Rnf20 protein_coding protein_coding MGP_C3HHeJ_T0065362.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48123706 48141892 + MGP_C3HHeJ_P0065362 Rnf20 protein_coding protein_coding MGP_C3HHeJ_T0065363.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48123712 48148518 + MGP_C3HHeJ_P0065363 Rnf20 protein_coding protein_coding MGP_C3HHeJ_T0065364.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48123739 48136180 + MGP_C3HHeJ_P0065364 Rnf20 protein_coding protein_coding MGP_C3HHeJ_T0065365.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48123783 48131660 + Rnf20 protein_coding processed_transcript MGP_C3HHeJ_T0065366.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48123805 48134606 + Rnf20 protein_coding processed_transcript MGP_C3HHeJ_T0065367.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48133364 48140080 + Rnf20 protein_coding processed_transcript MGP_C3HHeJ_T0065368.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48141903 48144467 + Rnf20 protein_coding processed_transcript MGP_C3HHeJ_T0065369.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48142608 48144191 + Rnf20 protein_coding processed_transcript MGP_C3HHeJ_T0067306.1 MGP_C3HHeJ_G0028439.1 mouse_genomes_project 4 123670033 123674176 - MGP_C3HHeJ_P0067306 Ndufs5 protein_coding protein_coding MGP_C3HHeJ_T0067307.1 MGP_C3HHeJ_G0028439.1 mouse_genomes_project 4 123670033 123676036 - MGP_C3HHeJ_P0067307 Ndufs5 protein_coding protein_coding MGP_C3HHeJ_T0067308.1 MGP_C3HHeJ_G0028439.1 mouse_genomes_project 4 123670033 123676020 - MGP_C3HHeJ_P0067308 Ndufs5 protein_coding protein_coding MGP_C3HHeJ_T0067309.1 MGP_C3HHeJ_G0028439.1 mouse_genomes_project 4 123670192 123676015 - MGP_C3HHeJ_P0067309 Ndufs5 protein_coding protein_coding MGP_C3HHeJ_T0014635.1 MGP_C3HHeJ_G0012739.1 mouse_genomes_project 4 143146871 143147436 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100650.1 MGP_C3HHeJ_G0038844.1 mouse_genomes_project 4 93311258 93311386 - Gm23443 snoRNA snoRNA MGP_C3HHeJ_T0067207.1 MGP_C3HHeJ_G0028412.1 mouse_genomes_project 4 121339640 121373698 - MGP_C3HHeJ_P0067207 Nfyc protein_coding protein_coding MGP_C3HHeJ_T0067208.1 MGP_C3HHeJ_G0028412.1 mouse_genomes_project 4 121339808 121346922 - Nfyc protein_coding processed_transcript MGP_C3HHeJ_T0067209.1 MGP_C3HHeJ_G0028412.1 mouse_genomes_project 4 121343179 121349708 - Nfyc protein_coding processed_transcript MGP_C3HHeJ_T0067210.1 MGP_C3HHeJ_G0028412.1 mouse_genomes_project 4 121346745 121411673 - MGP_C3HHeJ_P0067210 Nfyc protein_coding protein_coding MGP_C3HHeJ_T0067211.1 MGP_C3HHeJ_G0028412.1 mouse_genomes_project 4 121350369 121411685 - MGP_C3HHeJ_P0067211 Nfyc protein_coding protein_coding MGP_C3HHeJ_T0067212.1 MGP_C3HHeJ_G0028412.1 mouse_genomes_project 4 121362387 121411696 - MGP_C3HHeJ_P0067212 Nfyc protein_coding protein_coding MGP_C3HHeJ_T0065716.1 MGP_C3HHeJ_G0028085.1 mouse_genomes_project 4 73363410 73532805 + MGP_C3HHeJ_P0065716 Kdm4c protein_coding protein_coding MGP_C3HHeJ_T0065717.1 MGP_C3HHeJ_G0028085.1 mouse_genomes_project 4 73375058 73532805 + MGP_C3HHeJ_P0065717 Kdm4c protein_coding protein_coding MGP_C3HHeJ_T0065718.1 MGP_C3HHeJ_G0028085.1 mouse_genomes_project 4 73387104 73457424 + Kdm4c protein_coding processed_transcript MGP_C3HHeJ_T0065719.1 MGP_C3HHeJ_G0028085.1 mouse_genomes_project 4 73387104 73460490 + MGP_C3HHeJ_P0065719 Kdm4c protein_coding protein_coding MGP_C3HHeJ_T0065720.1 MGP_C3HHeJ_G0028085.1 mouse_genomes_project 4 73387105 73399040 + Kdm4c protein_coding processed_transcript MGP_C3HHeJ_T0065721.1 MGP_C3HHeJ_G0028085.1 mouse_genomes_project 4 73387105 73395063 + Kdm4c protein_coding processed_transcript MGP_C3HHeJ_T0065584.1 MGP_C3HHeJ_G0028050.1 mouse_genomes_project 4 61313974 61332424 + MGP_C3HHeJ_P0065584 Prpf4 protein_coding protein_coding MGP_C3HHeJ_T0065585.1 MGP_C3HHeJ_G0028050.1 mouse_genomes_project 4 61327098 61328759 + Prpf4 protein_coding processed_transcript MGP_C3HHeJ_T0098469.1 MGP_C3HHeJ_G0036674.1 mouse_genomes_project 4 29679021 29693237 + Bach2it1 sense_intronic sense_intronic MGP_C3HHeJ_T0066717.1 MGP_C3HHeJ_G0028304.1 mouse_genomes_project 4 116158579 116172529 + MGP_C3HHeJ_P0066717 Atpaf1 protein_coding protein_coding MGP_C3HHeJ_T0066718.1 MGP_C3HHeJ_G0028304.1 mouse_genomes_project 4 116158581 116185656 + MGP_C3HHeJ_P0066718 Atpaf1 protein_coding protein_coding MGP_C3HHeJ_T0066719.1 MGP_C3HHeJ_G0028304.1 mouse_genomes_project 4 116158819 116184539 + MGP_C3HHeJ_P0066719 Atpaf1 protein_coding protein_coding MGP_C3HHeJ_T0066720.1 MGP_C3HHeJ_G0028304.1 mouse_genomes_project 4 116158980 116189018 + MGP_C3HHeJ_P0066720 Atpaf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066721.1 MGP_C3HHeJ_G0028304.1 mouse_genomes_project 4 116174907 116193459 + MGP_C3HHeJ_P0066721 Atpaf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065045.1 MGP_C3HHeJ_G0027912.1 mouse_genomes_project 4 41750457 41762651 - Gba2 protein_coding retained_intron MGP_C3HHeJ_T0065046.1 MGP_C3HHeJ_G0027912.1 mouse_genomes_project 4 41750457 41762203 - Gba2 protein_coding retained_intron MGP_C3HHeJ_T0065047.1 MGP_C3HHeJ_G0027912.1 mouse_genomes_project 4 41750457 41762987 - MGP_C3HHeJ_P0065047 Gba2 protein_coding protein_coding MGP_C3HHeJ_T0065048.1 MGP_C3HHeJ_G0027912.1 mouse_genomes_project 4 41750458 41762203 - Gba2 protein_coding retained_intron MGP_C3HHeJ_T0065049.1 MGP_C3HHeJ_G0027912.1 mouse_genomes_project 4 41751923 41753172 - Gba2 protein_coding retained_intron MGP_C3HHeJ_T0065050.1 MGP_C3HHeJ_G0027912.1 mouse_genomes_project 4 41753892 41757598 - Gba2 protein_coding processed_transcript MGP_C3HHeJ_T0065051.1 MGP_C3HHeJ_G0027912.1 mouse_genomes_project 4 41754305 41762750 - MGP_C3HHeJ_P0065051 Gba2 protein_coding protein_coding MGP_C3HHeJ_T0011480.1 MGP_C3HHeJ_G0009613.1 mouse_genomes_project 4 101479971 101480245 + Gm22533 misc_RNA misc_RNA MGP_C3HHeJ_T0014642.1 MGP_C3HHeJ_G0012746.1 mouse_genomes_project 4 144958732 144959293 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014556.1 MGP_C3HHeJ_G0012660.1 mouse_genomes_project 4 117385601 117386404 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014469.1 MGP_C3HHeJ_G0012573.1 mouse_genomes_project 4 87194095 87195187 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001388.1 MGP_C3HHeJ_G0001319.1 mouse_genomes_project 4 136143178 136143508 + TEC TEC MGP_C3HHeJ_T0065089.1 MGP_C3HHeJ_G0027921.1 mouse_genomes_project 4 41898942 41903546 - MGP_C3HHeJ_P0065089 Olfr71 protein_coding protein_coding MGP_C3HHeJ_T0065090.1 MGP_C3HHeJ_G0027921.1 mouse_genomes_project 4 41898942 41899881 - MGP_C3HHeJ_P0065090 Olfr71 protein_coding protein_coding MGP_C3HHeJ_T0007840.1 MGP_C3HHeJ_G0006403.1 mouse_genomes_project 4 107879118 107884439 + Gm12907 lincRNA lincRNA MGP_C3HHeJ_T0097901.1 MGP_C3HHeJ_G0036113.1 mouse_genomes_project 4 3100046 3102921 - pseudogene pseudogene MGP_C3HHeJ_T0004465.1 MGP_C3HHeJ_G0003875.1 mouse_genomes_project 4 128431454 128433405 + Hmgb4os antisense antisense MGP_C3HHeJ_T0064866.1 MGP_C3HHeJ_G0027886.1 mouse_genomes_project 4 40701448 40702582 + MGP_C3HHeJ_P0064866 protein_coding protein_coding MGP_C3HHeJ_T0014597.1 MGP_C3HHeJ_G0012701.1 mouse_genomes_project 4 127108408 127108573 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065060.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41825849 41845113 + MGP_C3HHeJ_P0065060 Npr2 protein_coding protein_coding MGP_C3HHeJ_T0065061.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41826099 41845113 + MGP_C3HHeJ_P0065061 Npr2 protein_coding protein_coding MGP_C3HHeJ_T0065062.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41834967 41845113 + Npr2 protein_coding processed_transcript MGP_C3HHeJ_T0065063.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41835106 41836952 + Npr2 protein_coding processed_transcript MGP_C3HHeJ_T0065064.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41835113 41838241 + MGP_C3HHeJ_P0065064 Npr2 protein_coding protein_coding MGP_C3HHeJ_T0065065.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41835135 41845113 + MGP_C3HHeJ_P0065065 Npr2 protein_coding protein_coding MGP_C3HHeJ_T0065066.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41837997 41842040 + Npr2 protein_coding processed_transcript MGP_C3HHeJ_T0065067.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41840421 41844178 + Npr2 protein_coding processed_transcript MGP_C3HHeJ_T0065068.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41841058 41842267 + Npr2 protein_coding processed_transcript MGP_C3HHeJ_T0065069.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41841866 41844099 + Npr2 protein_coding processed_transcript MGP_C3HHeJ_T0068717.1 MGP_C3HHeJ_G0028757.1 mouse_genomes_project 4 142987664 142992877 - Cela2a protein_coding retained_intron MGP_C3HHeJ_T0068718.1 MGP_C3HHeJ_G0028757.1 mouse_genomes_project 4 142987664 142999019 - MGP_C3HHeJ_P0068718 Cela2a protein_coding protein_coding MGP_C3HHeJ_T0068720.1 MGP_C3HHeJ_G0028757.1 mouse_genomes_project 4 142997813 142998860 - Cela2a protein_coding retained_intron MGP_C3HHeJ_T0098135.1 MGP_C3HHeJ_G0036347.1 mouse_genomes_project 4 94806950 94807064 + n-R5s189 rRNA rRNA MGP_C3HHeJ_T0101997.1 MGP_C3HHeJ_G0039962.1 mouse_genomes_project 4 95917598 95917804 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0066473.1 MGP_C3HHeJ_G0028248.1 mouse_genomes_project 4 108469364 108482802 + MGP_C3HHeJ_P0066473 Coa7 protein_coding protein_coding MGP_C3HHeJ_T0066474.1 MGP_C3HHeJ_G0028248.1 mouse_genomes_project 4 108469377 108479709 + Coa7 protein_coding processed_transcript MGP_C3HHeJ_T0066475.1 MGP_C3HHeJ_G0028248.1 mouse_genomes_project 4 108469380 108479941 + Coa7 protein_coding processed_transcript MGP_C3HHeJ_T0066476.1 MGP_C3HHeJ_G0028248.1 mouse_genomes_project 4 108469402 108479436 + Coa7 protein_coding processed_transcript MGP_C3HHeJ_T0066477.1 MGP_C3HHeJ_G0028248.1 mouse_genomes_project 4 108469413 108473863 + Coa7 protein_coding processed_transcript MGP_C3HHeJ_T0066655.1 MGP_C3HHeJ_G0028280.1 mouse_genomes_project 4 112829739 112847644 + MGP_C3HHeJ_P0066655 Skint2 protein_coding protein_coding MGP_C3HHeJ_T0066656.1 MGP_C3HHeJ_G0028280.1 mouse_genomes_project 4 112829882 112871788 + MGP_C3HHeJ_P0066656 Skint2 protein_coding protein_coding MGP_C3HHeJ_T0066657.1 MGP_C3HHeJ_G0028280.1 mouse_genomes_project 4 112829893 112867318 + Skint2 protein_coding processed_transcript MGP_C3HHeJ_T0066658.1 MGP_C3HHeJ_G0028280.1 mouse_genomes_project 4 112832730 112867318 + MGP_C3HHeJ_P0066658 Skint2 protein_coding protein_coding MGP_C3HHeJ_T0099400.1 MGP_C3HHeJ_G0037594.1 mouse_genomes_project 4 136286163 136286264 + Gm23106 snRNA snRNA MGP_C3HHeJ_T0066470.1 MGP_C3HHeJ_G0028246.1 mouse_genomes_project 4 108312716 108350247 - MGP_C3HHeJ_P0066470 Zyg11a protein_coding protein_coding MGP_C3HHeJ_T0066471.1 MGP_C3HHeJ_G0028246.1 mouse_genomes_project 4 108312716 108350222 - MGP_C3HHeJ_P0066471 Zyg11a protein_coding protein_coding MGP_C3HHeJ_T0004527.1 MGP_C3HHeJ_G0003922.1 mouse_genomes_project 4 151959177 151963321 + Gm13070 antisense antisense MGP_C3HHeJ_T0014413.1 MGP_C3HHeJ_G0012517.1 mouse_genomes_project 4 62504488 62504735 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014582.1 MGP_C3HHeJ_G0012686.1 mouse_genomes_project 4 122452065 122453066 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010524.1 MGP_C3HHeJ_G0008657.1 mouse_genomes_project 4 107556058 107556143 + Gm24804 miRNA miRNA MGP_C3HHeJ_T0099357.1 MGP_C3HHeJ_G0037551.1 mouse_genomes_project 4 68209235 68209342 + Gm24697 snRNA snRNA MGP_C3HHeJ_T0014646.1 MGP_C3HHeJ_G0012750.1 mouse_genomes_project 4 147455617 149390840 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014316.1 MGP_C3HHeJ_G0012420.1 mouse_genomes_project 4 25880449 25880866 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007873.1 MGP_C3HHeJ_G0006426.1 mouse_genomes_project 4 127692115 127719533 + A630031M04Rik lincRNA lincRNA MGP_C3HHeJ_T0102017.1 MGP_C3HHeJ_G0039982.1 mouse_genomes_project 4 122511269 122519228 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014256.1 MGP_C3HHeJ_G0012360.1 mouse_genomes_project 4 12040579 12040906 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014608.1 MGP_C3HHeJ_G0012712.1 mouse_genomes_project 4 132557905 132558592 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014332.1 MGP_C3HHeJ_G0012436.1 mouse_genomes_project 4 30943474 30943873 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101995.1 MGP_C3HHeJ_G0039960.1 mouse_genomes_project 4 88313402 88313910 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099413.1 MGP_C3HHeJ_G0037607.1 mouse_genomes_project 4 158052047 158052149 - Gm22573 snRNA snRNA MGP_C3HHeJ_T0007890.1 MGP_C3HHeJ_G0006438.1 mouse_genomes_project 4 131320920 131355107 + Gm12973 lincRNA lincRNA MGP_C3HHeJ_T0067888.1 MGP_C3HHeJ_G0028563.1 mouse_genomes_project 4 132734100 132735289 - MGP_C3HHeJ_P0067888 Rab42 protein_coding protein_coding MGP_C3HHeJ_T0014574.1 MGP_C3HHeJ_G0012678.1 mouse_genomes_project 4 121493828 121494266 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068255.1 MGP_C3HHeJ_G0028646.1 mouse_genomes_project 4 136463355 136526900 + MGP_C3HHeJ_P0068255 Myom3 protein_coding protein_coding MGP_C3HHeJ_T0068256.1 MGP_C3HHeJ_G0028646.1 mouse_genomes_project 4 136505780 136526900 + Myom3 protein_coding retained_intron MGP_C3HHeJ_T0068257.1 MGP_C3HHeJ_G0028646.1 mouse_genomes_project 4 136509069 136515090 + Myom3 protein_coding retained_intron MGP_C3HHeJ_T0007877.1 MGP_C3HHeJ_G0006430.1 mouse_genomes_project 4 129257887 129265759 - 1700086P04Rik lincRNA lincRNA MGP_C3HHeJ_T0065263.1 MGP_C3HHeJ_G0027959.1 mouse_genomes_project 4 44826103 44841029 + MGP_C3HHeJ_P0065263 Nans protein_coding protein_coding MGP_C3HHeJ_T0065264.1 MGP_C3HHeJ_G0027959.1 mouse_genomes_project 4 44826174 44831992 + Nans protein_coding processed_transcript MGP_C3HHeJ_T0065265.1 MGP_C3HHeJ_G0027959.1 mouse_genomes_project 4 44826229 44835938 + Nans protein_coding processed_transcript MGP_C3HHeJ_T0065266.1 MGP_C3HHeJ_G0027959.1 mouse_genomes_project 4 44826840 44837601 + Nans protein_coding processed_transcript MGP_C3HHeJ_T0065708.1 MGP_C3HHeJ_G0028082.1 mouse_genomes_project 4 72832005 72912332 - MGP_C3HHeJ_P0065708 Rasef protein_coding protein_coding MGP_C3HHeJ_T0065709.1 MGP_C3HHeJ_G0028082.1 mouse_genomes_project 4 72832005 72912439 - MGP_C3HHeJ_P0065709 Rasef protein_coding protein_coding MGP_C3HHeJ_T0064505.1 MGP_C3HHeJ_G0027796.1 mouse_genomes_project 4 19569242 19575688 - MGP_C3HHeJ_P0064505 Pou3f2 protein_coding protein_coding MGP_C3HHeJ_T0065747.1 MGP_C3HHeJ_G0028091.1 mouse_genomes_project 4 80191847 80195409 + MGP_C3HHeJ_P0065747 Tyrp1 protein_coding protein_coding MGP_C3HHeJ_T0065748.1 MGP_C3HHeJ_G0028091.1 mouse_genomes_project 4 80191954 80209495 + MGP_C3HHeJ_P0065748 Tyrp1 protein_coding protein_coding MGP_C3HHeJ_T0065749.1 MGP_C3HHeJ_G0028091.1 mouse_genomes_project 4 80192031 80209496 + MGP_C3HHeJ_P0065749 Tyrp1 protein_coding protein_coding MGP_C3HHeJ_T0065750.1 MGP_C3HHeJ_G0028091.1 mouse_genomes_project 4 80204363 80208777 + MGP_C3HHeJ_P0065750 Tyrp1 protein_coding protein_coding MGP_C3HHeJ_T0010503.1 MGP_C3HHeJ_G0008636.1 mouse_genomes_project 4 41825339 41825472 + Gm25262 miRNA miRNA MGP_C3HHeJ_T0010501.1 MGP_C3HHeJ_G0008634.1 mouse_genomes_project 4 38637128 38637207 + Mir207 miRNA miRNA MGP_C3HHeJ_T0064648.1 MGP_C3HHeJ_G0027829.1 mouse_genomes_project 4 32300469 32314062 - MGP_C3HHeJ_P0064648 Gm136 protein_coding protein_coding MGP_C3HHeJ_T0004496.1 MGP_C3HHeJ_G0003901.1 mouse_genomes_project 4 142531713 142543873 + Gm13075 antisense antisense MGP_C3HHeJ_T0004497.1 MGP_C3HHeJ_G0003901.1 mouse_genomes_project 4 142531741 142545049 + Gm13075 antisense antisense MGP_C3HHeJ_T0017845.1 MGP_C3HHeJ_G0015322.1 mouse_genomes_project 4 95728391 95738048 - 9530080O11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017846.1 MGP_C3HHeJ_G0015322.1 mouse_genomes_project 4 95728919 95737428 - 9530080O11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0064531.1 MGP_C3HHeJ_G0027802.1 mouse_genomes_project 4 22377350 22410193 - Ufl1 protein_coding retained_intron MGP_C3HHeJ_T0064532.1 MGP_C3HHeJ_G0027802.1 mouse_genomes_project 4 22379220 22410185 - MGP_C3HHeJ_P0064532 Ufl1 protein_coding protein_coding MGP_C3HHeJ_T0064533.1 MGP_C3HHeJ_G0027802.1 mouse_genomes_project 4 22397644 22410181 - Ufl1 protein_coding processed_transcript MGP_C3HHeJ_T0004451.1 MGP_C3HHeJ_G0003865.1 mouse_genomes_project 4 122993473 122994456 - Gm12923 antisense antisense MGP_C3HHeJ_T0001377.1 MGP_C3HHeJ_G0001308.1 mouse_genomes_project 4 42946605 42948916 + TEC TEC MGP_C3HHeJ_T0065861.1 MGP_C3HHeJ_G0028106.1 mouse_genomes_project 4 85954184 86042493 - Saxo1 protein_coding processed_transcript MGP_C3HHeJ_T0065862.1 MGP_C3HHeJ_G0028106.1 mouse_genomes_project 4 85954184 86061686 - MGP_C3HHeJ_P0065862 Saxo1 protein_coding protein_coding MGP_C3HHeJ_T0065863.1 MGP_C3HHeJ_G0028106.1 mouse_genomes_project 4 85984250 86061378 - Saxo1 protein_coding processed_transcript MGP_C3HHeJ_T0065864.1 MGP_C3HHeJ_G0028106.1 mouse_genomes_project 4 85986838 86061711 - Saxo1 protein_coding processed_transcript MGP_C3HHeJ_T0001389.1 MGP_C3HHeJ_G0001320.1 mouse_genomes_project 4 137418437 137421818 + TEC TEC MGP_C3HHeJ_T0068486.1 MGP_C3HHeJ_G0028699.1 mouse_genomes_project 4 139708951 139717216 - MGP_C3HHeJ_P0068486 Pla2g2f protein_coding protein_coding MGP_C3HHeJ_T0014541.1 MGP_C3HHeJ_G0012645.1 mouse_genomes_project 4 111525189 111526237 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067058.1 MGP_C3HHeJ_G0028368.1 mouse_genomes_project 4 119044371 119047153 - MGP_C3HHeJ_P0067058 Tmem125 protein_coding protein_coding MGP_C3HHeJ_T0067059.1 MGP_C3HHeJ_G0028368.1 mouse_genomes_project 4 119045289 119047469 - MGP_C3HHeJ_P0067059 Tmem125 protein_coding protein_coding MGP_C3HHeJ_T0067060.1 MGP_C3HHeJ_G0028368.1 mouse_genomes_project 4 119045447 119046387 - MGP_C3HHeJ_P0067060 Tmem125 protein_coding protein_coding MGP_C3HHeJ_T0067061.1 MGP_C3HHeJ_G0028368.1 mouse_genomes_project 4 119045497 119046714 - MGP_C3HHeJ_P0067061 Tmem125 protein_coding protein_coding MGP_C3HHeJ_T0067062.1 MGP_C3HHeJ_G0028368.1 mouse_genomes_project 4 119046026 119046674 - Tmem125 protein_coding processed_transcript MGP_C3HHeJ_T0068774.1 MGP_C3HHeJ_G0028782.1 mouse_genomes_project 4 145606950 145613257 - MGP_C3HHeJ_P0068774 protein_coding protein_coding MGP_C3HHeJ_T0014265.1 MGP_C3HHeJ_G0012369.1 mouse_genomes_project 4 13301996 13303057 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004535.1 MGP_C3HHeJ_G0003930.1 mouse_genomes_project 4 156903526 156906532 + Gm13134 antisense antisense MGP_C3HHeJ_T0004536.1 MGP_C3HHeJ_G0003930.1 mouse_genomes_project 4 156903644 156905034 + Gm13134 antisense antisense MGP_C3HHeJ_T0007845.1 MGP_C3HHeJ_G0006407.1 mouse_genomes_project 4 114930958 114931602 - Gm28864 lincRNA lincRNA MGP_C3HHeJ_T0067277.1 MGP_C3HHeJ_G0028435.1 mouse_genomes_project 4 123142401 123158710 + MGP_C3HHeJ_P0067277 Heyl protein_coding protein_coding MGP_C3HHeJ_T0067278.1 MGP_C3HHeJ_G0028435.1 mouse_genomes_project 4 123142698 123149510 + Heyl protein_coding processed_transcript MGP_C3HHeJ_T0067279.1 MGP_C3HHeJ_G0028435.1 mouse_genomes_project 4 123148607 123154825 + Heyl protein_coding processed_transcript MGP_C3HHeJ_T0065643.1 MGP_C3HHeJ_G0028064.1 mouse_genomes_project 4 62295797 62332578 - MGP_C3HHeJ_P0065643 Akna protein_coding protein_coding MGP_C3HHeJ_T0065644.1 MGP_C3HHeJ_G0028064.1 mouse_genomes_project 4 62308596 62309876 - Akna protein_coding processed_transcript MGP_C3HHeJ_T0067130.1 MGP_C3HHeJ_G0028394.1 mouse_genomes_project 4 119833389 119853890 - MGP_C3HHeJ_P0067130 Ppih protein_coding protein_coding MGP_C3HHeJ_T0067131.1 MGP_C3HHeJ_G0028394.1 mouse_genomes_project 4 119833389 119853952 - MGP_C3HHeJ_P0067131 Ppih protein_coding protein_coding MGP_C3HHeJ_T0067132.1 MGP_C3HHeJ_G0028394.1 mouse_genomes_project 4 119833389 119853903 - MGP_C3HHeJ_P0067132 Ppih protein_coding protein_coding MGP_C3HHeJ_T0067133.1 MGP_C3HHeJ_G0028394.1 mouse_genomes_project 4 119839993 119853823 - MGP_C3HHeJ_P0067133 Ppih protein_coding protein_coding MGP_C3HHeJ_T0067134.1 MGP_C3HHeJ_G0028394.1 mouse_genomes_project 4 119840566 119853890 - MGP_C3HHeJ_P0067134 Ppih protein_coding protein_coding MGP_C3HHeJ_T0067135.1 MGP_C3HHeJ_G0028394.1 mouse_genomes_project 4 119844729 119853905 - MGP_C3HHeJ_P0067135 Ppih protein_coding protein_coding MGP_C3HHeJ_T0066820.1 MGP_C3HHeJ_G0028324.1 mouse_genomes_project 4 117007337 117010885 + Ccdc17 protein_coding processed_transcript MGP_C3HHeJ_T0066821.1 MGP_C3HHeJ_G0028324.1 mouse_genomes_project 4 117007413 117010950 + MGP_C3HHeJ_P0066821 Ccdc17 protein_coding protein_coding MGP_C3HHeJ_T0066822.1 MGP_C3HHeJ_G0028324.1 mouse_genomes_project 4 117007486 117008884 + Ccdc17 protein_coding processed_transcript MGP_C3HHeJ_T0066823.1 MGP_C3HHeJ_G0028324.1 mouse_genomes_project 4 117008443 117010906 + Ccdc17 protein_coding processed_transcript MGP_C3HHeJ_T0066824.1 MGP_C3HHeJ_G0028324.1 mouse_genomes_project 4 117009175 117009848 + Ccdc17 protein_coding processed_transcript MGP_C3HHeJ_T0017808.1 MGP_C3HHeJ_G0015296.1 mouse_genomes_project 4 13070243 13178385 + A530072M11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0004520.1 MGP_C3HHeJ_G0003917.1 mouse_genomes_project 4 151369664 151370107 + Ube4bos2 antisense antisense MGP_C3HHeJ_T0064415.1 MGP_C3HHeJ_G0027769.1 mouse_genomes_project 4 11844742 12035062 - MGP_C3HHeJ_P0064415 Necab1 protein_coding protein_coding MGP_C3HHeJ_T0064416.1 MGP_C3HHeJ_G0027769.1 mouse_genomes_project 4 11847426 12035982 - MGP_C3HHeJ_P0064416 Necab1 protein_coding protein_coding MGP_C3HHeJ_T0064417.1 MGP_C3HHeJ_G0027769.1 mouse_genomes_project 4 12002881 12034892 - Necab1 protein_coding processed_transcript MGP_C3HHeJ_T0067377.1 MGP_C3HHeJ_G0028459.1 mouse_genomes_project 4 125087026 125095638 + MGP_C3HHeJ_P0067377 Snip1 protein_coding protein_coding MGP_C3HHeJ_T0067378.1 MGP_C3HHeJ_G0028459.1 mouse_genomes_project 4 125087056 125092897 + Snip1 protein_coding processed_transcript MGP_C3HHeJ_T0004423.1 MGP_C3HHeJ_G0003844.1 mouse_genomes_project 4 107923968 107928882 - Lrp8os2 antisense antisense MGP_C3HHeJ_T0004424.1 MGP_C3HHeJ_G0003844.1 mouse_genomes_project 4 107923968 107942128 - Lrp8os2 antisense antisense MGP_C3HHeJ_T0004425.1 MGP_C3HHeJ_G0003844.1 mouse_genomes_project 4 107925927 107942080 - Lrp8os2 antisense antisense MGP_C3HHeJ_T0004426.1 MGP_C3HHeJ_G0003844.1 mouse_genomes_project 4 107928741 107942116 - Lrp8os2 antisense antisense MGP_C3HHeJ_T0014226.1 MGP_C3HHeJ_G0012330.1 mouse_genomes_project 4 1643854 1644222 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066678.1 MGP_C3HHeJ_G0028290.1 mouse_genomes_project 4 115330236 115345622 + MGP_C3HHeJ_P0066678 Tal1 protein_coding protein_coding MGP_C3HHeJ_T0066679.1 MGP_C3HHeJ_G0028290.1 mouse_genomes_project 4 115331248 115337419 + MGP_C3HHeJ_P0066679 Tal1 protein_coding protein_coding MGP_C3HHeJ_T0066680.1 MGP_C3HHeJ_G0028290.1 mouse_genomes_project 4 115331621 115345094 + MGP_C3HHeJ_P0066680 Tal1 protein_coding protein_coding MGP_C3HHeJ_T0066681.1 MGP_C3HHeJ_G0028290.1 mouse_genomes_project 4 115333319 115344329 + MGP_C3HHeJ_P0066681 Tal1 protein_coding protein_coding MGP_C3HHeJ_T0066035.1 MGP_C3HHeJ_G0028159.1 mouse_genomes_project 4 96348631 96371650 - MGP_C3HHeJ_P0066035 Cyp2j9 protein_coding protein_coding MGP_C3HHeJ_T0066036.1 MGP_C3HHeJ_G0028159.1 mouse_genomes_project 4 96356407 96371650 - Cyp2j9 protein_coding retained_intron MGP_C3HHeJ_T0069458.1 MGP_C3HHeJ_G0028924.1 mouse_genomes_project 4 158026041 158028181 + MGP_C3HHeJ_P0069458 Fndc10 protein_coding protein_coding MGP_C3HHeJ_T0068372.1 MGP_C3HHeJ_G0028675.1 mouse_genomes_project 4 138092141 138115249 + MGP_C3HHeJ_P0068372 Wnt4 protein_coding protein_coding MGP_C3HHeJ_T0004467.1 MGP_C3HHeJ_G0003877.1 mouse_genomes_project 4 129741133 129758969 - Gm12979 antisense antisense MGP_C3HHeJ_T0007897.1 MGP_C3HHeJ_G0006443.1 mouse_genomes_project 4 132450325 132451109 + Gm13063 lincRNA lincRNA MGP_C3HHeJ_T0065589.1 MGP_C3HHeJ_G0028052.1 mouse_genomes_project 4 61354626 61375017 - MGP_C3HHeJ_P0065589 Wdr31 protein_coding protein_coding MGP_C3HHeJ_T0065590.1 MGP_C3HHeJ_G0028052.1 mouse_genomes_project 4 61355628 61375017 - MGP_C3HHeJ_P0065590 Wdr31 protein_coding protein_coding MGP_C3HHeJ_T0065591.1 MGP_C3HHeJ_G0028052.1 mouse_genomes_project 4 61355628 61364537 - MGP_C3HHeJ_P0065591 Wdr31 protein_coding protein_coding MGP_C3HHeJ_T0065592.1 MGP_C3HHeJ_G0028052.1 mouse_genomes_project 4 61355628 61375017 - MGP_C3HHeJ_P0065592 Wdr31 protein_coding protein_coding MGP_C3HHeJ_T0065593.1 MGP_C3HHeJ_G0028052.1 mouse_genomes_project 4 61361765 61363498 - Wdr31 protein_coding retained_intron MGP_C3HHeJ_T0065594.1 MGP_C3HHeJ_G0028052.1 mouse_genomes_project 4 61362610 61364978 - Wdr31 protein_coding retained_intron MGP_C3HHeJ_T0065595.1 MGP_C3HHeJ_G0028052.1 mouse_genomes_project 4 61367472 61375026 - MGP_C3HHeJ_P0065595 Wdr31 protein_coding protein_coding MGP_C3HHeJ_T0065596.1 MGP_C3HHeJ_G0028052.1 mouse_genomes_project 4 61368127 61375004 - MGP_C3HHeJ_P0065596 Wdr31 protein_coding protein_coding MGP_C3HHeJ_T0064434.1 MGP_C3HHeJ_G0027776.1 mouse_genomes_project 4 14831671 15100061 + MGP_C3HHeJ_P0064434 Mmp16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064435.1 MGP_C3HHeJ_G0027776.1 mouse_genomes_project 4 14831869 14980124 + MGP_C3HHeJ_P0064435 Mmp16 protein_coding protein_coding MGP_C3HHeJ_T0064436.1 MGP_C3HHeJ_G0027776.1 mouse_genomes_project 4 14832220 15101748 + MGP_C3HHeJ_P0064436 Mmp16 protein_coding protein_coding MGP_C3HHeJ_T0064437.1 MGP_C3HHeJ_G0027776.1 mouse_genomes_project 4 14832355 15031218 + Mmp16 protein_coding retained_intron MGP_C3HHeJ_T0064438.1 MGP_C3HHeJ_G0027776.1 mouse_genomes_project 4 15028285 15074459 + Mmp16 protein_coding retained_intron MGP_C3HHeJ_T0100600.1 MGP_C3HHeJ_G0038794.1 mouse_genomes_project 4 1411003 1411135 + Gm26436 snoRNA snoRNA MGP_C3HHeJ_T0102013.1 MGP_C3HHeJ_G0039978.1 mouse_genomes_project 4 119358354 119359308 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007812.1 MGP_C3HHeJ_G0006383.1 mouse_genomes_project 4 94836677 94839015 - 4930551L18Rik lincRNA lincRNA MGP_C3HHeJ_T0100686.1 MGP_C3HHeJ_G0038880.1 mouse_genomes_project 4 156412018 156412162 + Gm26036 snoRNA snoRNA MGP_C3HHeJ_T0014236.1 MGP_C3HHeJ_G0012340.1 mouse_genomes_project 4 5356300 5357250 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064649.1 MGP_C3HHeJ_G0027830.1 mouse_genomes_project 4 32323477 32333304 - MGP_C3HHeJ_P0064649 Smim8 protein_coding protein_coding MGP_C3HHeJ_T0064650.1 MGP_C3HHeJ_G0027830.1 mouse_genomes_project 4 32323477 32333319 - MGP_C3HHeJ_P0064650 Smim8 protein_coding protein_coding MGP_C3HHeJ_T0064651.1 MGP_C3HHeJ_G0027830.1 mouse_genomes_project 4 32323477 32333426 - MGP_C3HHeJ_P0064651 Smim8 protein_coding protein_coding MGP_C3HHeJ_T0064652.1 MGP_C3HHeJ_G0027830.1 mouse_genomes_project 4 32323477 32333292 - MGP_C3HHeJ_P0064652 Smim8 protein_coding protein_coding MGP_C3HHeJ_T0064653.1 MGP_C3HHeJ_G0027830.1 mouse_genomes_project 4 32323477 32333225 - MGP_C3HHeJ_P0064653 Smim8 protein_coding protein_coding MGP_C3HHeJ_T0064654.1 MGP_C3HHeJ_G0027830.1 mouse_genomes_project 4 32323488 32333286 - Smim8 protein_coding processed_transcript MGP_C3HHeJ_T0064655.1 MGP_C3HHeJ_G0027830.1 mouse_genomes_project 4 32325701 32333310 - Smim8 protein_coding retained_intron MGP_C3HHeJ_T0064656.1 MGP_C3HHeJ_G0027830.1 mouse_genomes_project 4 32326059 32333173 - Smim8 protein_coding processed_transcript MGP_C3HHeJ_T0007743.1 MGP_C3HHeJ_G0006325.1 mouse_genomes_project 4 38222415 38226901 + 4930509K18Rik lincRNA lincRNA MGP_C3HHeJ_T0067000.1 MGP_C3HHeJ_G0028356.1 mouse_genomes_project 4 118393621 118399800 - Ipo13 protein_coding processed_transcript MGP_C3HHeJ_T0067001.1 MGP_C3HHeJ_G0028356.1 mouse_genomes_project 4 118393621 118413664 - MGP_C3HHeJ_P0067001 Ipo13 protein_coding protein_coding MGP_C3HHeJ_T0067002.1 MGP_C3HHeJ_G0028356.1 mouse_genomes_project 4 118393762 118394250 - Ipo13 protein_coding processed_transcript MGP_C3HHeJ_T0067003.1 MGP_C3HHeJ_G0028356.1 mouse_genomes_project 4 118394027 118395009 - Ipo13 protein_coding processed_transcript MGP_C3HHeJ_T0067004.1 MGP_C3HHeJ_G0028356.1 mouse_genomes_project 4 118394475 118395028 - Ipo13 protein_coding processed_transcript MGP_C3HHeJ_T0067005.1 MGP_C3HHeJ_G0028356.1 mouse_genomes_project 4 118400092 118403005 - Ipo13 protein_coding processed_transcript MGP_C3HHeJ_T0068038.1 MGP_C3HHeJ_G0028599.1 mouse_genomes_project 4 134202601 134214798 - MGP_C3HHeJ_P0068038 Pigv protein_coding protein_coding MGP_C3HHeJ_T0068039.1 MGP_C3HHeJ_G0028599.1 mouse_genomes_project 4 134204459 134214798 - MGP_C3HHeJ_P0068039 Pigv protein_coding protein_coding MGP_C3HHeJ_T0068040.1 MGP_C3HHeJ_G0028599.1 mouse_genomes_project 4 134210898 134214798 - Pigv protein_coding processed_transcript MGP_C3HHeJ_T0014377.1 MGP_C3HHeJ_G0012481.1 mouse_genomes_project 4 48571239 48571734 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010556.1 MGP_C3HHeJ_G0008689.1 mouse_genomes_project 4 139060063 139060147 + Mir6399 miRNA miRNA MGP_C3HHeJ_T0007789.1 MGP_C3HHeJ_G0006364.1 mouse_genomes_project 4 71102168 71118085 + lincRNA lincRNA MGP_C3HHeJ_T0068941.1 MGP_C3HHeJ_G0028834.1 mouse_genomes_project 4 150959523 151111904 - MGP_C3HHeJ_P0068941 Pex14 protein_coding protein_coding MGP_C3HHeJ_T0068942.1 MGP_C3HHeJ_G0028834.1 mouse_genomes_project 4 150962226 151111844 - Pex14 protein_coding retained_intron MGP_C3HHeJ_T0068943.1 MGP_C3HHeJ_G0028834.1 mouse_genomes_project 4 150982969 151111843 - Pex14 protein_coding processed_transcript MGP_C3HHeJ_T0068944.1 MGP_C3HHeJ_G0028834.1 mouse_genomes_project 4 150983720 151111837 - MGP_C3HHeJ_P0068944 Pex14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068945.1 MGP_C3HHeJ_G0028834.1 mouse_genomes_project 4 151015822 151111856 - Pex14 protein_coding processed_transcript MGP_C3HHeJ_T0014391.1 MGP_C3HHeJ_G0012495.1 mouse_genomes_project 4 53219640 53220208 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014606.1 MGP_C3HHeJ_G0012710.1 mouse_genomes_project 4 132557900 132558592 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100604.1 MGP_C3HHeJ_G0038798.1 mouse_genomes_project 4 10947631 10947763 - Gm24068 snoRNA snoRNA MGP_C3HHeJ_T0064312.1 MGP_C3HHeJ_G0027745.1 mouse_genomes_project 4 7742980 7764205 - MGP_C3HHeJ_P0064312 Plekhf2 protein_coding protein_coding MGP_C3HHeJ_T0064313.1 MGP_C3HHeJ_G0027745.1 mouse_genomes_project 4 7745838 7764456 - MGP_C3HHeJ_P0064313 Plekhf2 protein_coding protein_coding MGP_C3HHeJ_T0010489.1 MGP_C3HHeJ_G0008622.1 mouse_genomes_project 4 10106710 10106776 - Gm26250 miRNA miRNA MGP_C3HHeJ_T0068382.1 MGP_C3HHeJ_G0028681.1 mouse_genomes_project 4 138443874 138446367 - MGP_C3HHeJ_P0068382 Ldlrad2 protein_coding protein_coding MGP_C3HHeJ_T0007725.1 MGP_C3HHeJ_G0006308.1 mouse_genomes_project 4 13376812 13424940 + Gm11861 lincRNA lincRNA MGP_C3HHeJ_T0004528.1 MGP_C3HHeJ_G0003923.1 mouse_genomes_project 4 152666593 152670432 - antisense antisense MGP_C3HHeJ_T0069529.1 MGP_C3HHeJ_G0028940.1 mouse_genomes_project 4 158231755 158246546 + MGP_C3HHeJ_P0069529 Acap3 protein_coding protein_coding MGP_C3HHeJ_T0069530.1 MGP_C3HHeJ_G0028940.1 mouse_genomes_project 4 158231808 158246547 + MGP_C3HHeJ_P0069530 Acap3 protein_coding protein_coding MGP_C3HHeJ_T0069531.1 MGP_C3HHeJ_G0028940.1 mouse_genomes_project 4 158231835 158238776 + Acap3 protein_coding processed_transcript MGP_C3HHeJ_T0069532.1 MGP_C3HHeJ_G0028940.1 mouse_genomes_project 4 158232205 158238918 + Acap3 protein_coding processed_transcript MGP_C3HHeJ_T0069533.1 MGP_C3HHeJ_G0028940.1 mouse_genomes_project 4 158232245 158246547 + Acap3 protein_coding processed_transcript MGP_C3HHeJ_T0069534.1 MGP_C3HHeJ_G0028940.1 mouse_genomes_project 4 158240891 158241994 + Acap3 protein_coding retained_intron MGP_C3HHeJ_T0069535.1 MGP_C3HHeJ_G0028940.1 mouse_genomes_project 4 158241882 158244401 + Acap3 protein_coding retained_intron MGP_C3HHeJ_T0069536.1 MGP_C3HHeJ_G0028940.1 mouse_genomes_project 4 158242544 158244632 + Acap3 protein_coding processed_transcript MGP_C3HHeJ_T0069537.1 MGP_C3HHeJ_G0028940.1 mouse_genomes_project 4 158244649 158245208 + Acap3 protein_coding processed_transcript MGP_C3HHeJ_T0007947.1 MGP_C3HHeJ_G0006483.1 mouse_genomes_project 4 155458085 155458505 + Gm13174 lincRNA lincRNA MGP_C3HHeJ_T0010496.1 MGP_C3HHeJ_G0008629.1 mouse_genomes_project 4 28077275 28077384 - Gm22831 miRNA miRNA MGP_C3HHeJ_T0068560.1 MGP_C3HHeJ_G0028717.1 mouse_genomes_project 4 140620762 140683387 + MGP_C3HHeJ_P0068560 Gm21969 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014594.1 MGP_C3HHeJ_G0012698.1 mouse_genomes_project 4 126610090 126610422 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066913.1 MGP_C3HHeJ_G0028340.1 mouse_genomes_project 4 117582643 117584201 + MGP_C3HHeJ_P0066913 Tctex1d4 protein_coding protein_coding MGP_C3HHeJ_T0066914.1 MGP_C3HHeJ_G0028340.1 mouse_genomes_project 4 117582662 117584602 + MGP_C3HHeJ_P0066914 Tctex1d4 protein_coding protein_coding MGP_C3HHeJ_T0066915.1 MGP_C3HHeJ_G0028340.1 mouse_genomes_project 4 117583023 117584380 + MGP_C3HHeJ_P0066915 Tctex1d4 protein_coding protein_coding MGP_C3HHeJ_T0065340.1 MGP_C3HHeJ_G0027977.1 mouse_genomes_project 4 47076624 47086574 + MGP_C3HHeJ_P0065340 Murc protein_coding protein_coding MGP_C3HHeJ_T0007924.1 MGP_C3HHeJ_G0006461.1 mouse_genomes_project 4 140982442 140999449 - 4933427I22Rik lincRNA lincRNA MGP_C3HHeJ_T0007925.1 MGP_C3HHeJ_G0006461.1 mouse_genomes_project 4 140983014 140989295 - 4933427I22Rik lincRNA lincRNA MGP_C3HHeJ_T0014591.1 MGP_C3HHeJ_G0012695.1 mouse_genomes_project 4 124722314 124722953 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066964.1 MGP_C3HHeJ_G0028350.1 mouse_genomes_project 4 118251378 118260034 - MGP_C3HHeJ_P0066964 Klf17 protein_coding protein_coding MGP_C3HHeJ_T0100681.1 MGP_C3HHeJ_G0038875.1 mouse_genomes_project 4 132790091 132790296 - Snora73a snoRNA snoRNA MGP_C3HHeJ_T0099374.1 MGP_C3HHeJ_G0037568.1 mouse_genomes_project 4 108677534 108677641 - Gm25827 snRNA snRNA MGP_C3HHeJ_T0065805.1 MGP_C3HHeJ_G0028100.1 mouse_genomes_project 4 82841945 82873857 - MGP_C3HHeJ_P0065805 Psip1 protein_coding protein_coding MGP_C3HHeJ_T0065806.1 MGP_C3HHeJ_G0028100.1 mouse_genomes_project 4 82844340 82847743 - Psip1 protein_coding retained_intron MGP_C3HHeJ_T0065807.1 MGP_C3HHeJ_G0028100.1 mouse_genomes_project 4 82849321 82852415 - MGP_C3HHeJ_P0065807 Psip1 protein_coding protein_coding MGP_C3HHeJ_T0065808.1 MGP_C3HHeJ_G0028100.1 mouse_genomes_project 4 82849321 82873856 - MGP_C3HHeJ_P0065808 Psip1 protein_coding protein_coding MGP_C3HHeJ_T0065809.1 MGP_C3HHeJ_G0028100.1 mouse_genomes_project 4 82849321 82873851 - MGP_C3HHeJ_P0065809 Psip1 protein_coding protein_coding MGP_C3HHeJ_T0065810.1 MGP_C3HHeJ_G0028100.1 mouse_genomes_project 4 82850280 82852494 - Psip1 protein_coding retained_intron MGP_C3HHeJ_T0065812.1 MGP_C3HHeJ_G0028100.1 mouse_genomes_project 4 82863745 82873576 - MGP_C3HHeJ_P0065812 Psip1 protein_coding protein_coding MGP_C3HHeJ_T0007746.1 MGP_C3HHeJ_G0006328.1 mouse_genomes_project 4 39708628 39709034 + Gm21980 lincRNA lincRNA MGP_C3HHeJ_T0068680.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142729153 142757099 - MGP_C3HHeJ_P0068680 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068681.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142729153 142755405 - MGP_C3HHeJ_P0068681 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068682.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142729153 142763245 - MGP_C3HHeJ_P0068682 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068683.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142744680 142757010 - MGP_C3HHeJ_P0068683 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068684.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142744702 142763289 - MGP_C3HHeJ_P0068684 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068685.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142744702 142763230 - MGP_C3HHeJ_P0068685 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068686.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142744725 142755698 - MGP_C3HHeJ_P0068686 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068687.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142745367 142757208 - MGP_C3HHeJ_P0068687 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068688.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142745430 142753641 - Fblim1 protein_coding processed_transcript MGP_C3HHeJ_T0068689.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142745446 142757063 - MGP_C3HHeJ_P0068689 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068690.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142745447 142755405 - MGP_C3HHeJ_P0068690 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068691.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142745457 142755387 - MGP_C3HHeJ_P0068691 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068692.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142752371 142763218 - MGP_C3HHeJ_P0068692 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068693.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142752422 142763229 - MGP_C3HHeJ_P0068693 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068694.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142752489 142763220 - MGP_C3HHeJ_P0068694 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0064659.1 MGP_C3HHeJ_G0027832.1 mouse_genomes_project 4 32459314 32472418 + MGP_C3HHeJ_P0064659 Cga protein_coding protein_coding MGP_C3HHeJ_T0064660.1 MGP_C3HHeJ_G0027832.1 mouse_genomes_project 4 32459323 32472180 + MGP_C3HHeJ_P0064660 Cga protein_coding protein_coding MGP_C3HHeJ_T0064661.1 MGP_C3HHeJ_G0027832.1 mouse_genomes_project 4 32459323 32472226 + MGP_C3HHeJ_P0064661 Cga protein_coding protein_coding MGP_C3HHeJ_T0068956.1 MGP_C3HHeJ_G0028838.1 mouse_genomes_project 4 151169967 151186613 - MGP_C3HHeJ_P0068956 Pgd protein_coding protein_coding MGP_C3HHeJ_T0068957.1 MGP_C3HHeJ_G0028838.1 mouse_genomes_project 4 151175135 151179925 - Pgd protein_coding retained_intron MGP_C3HHeJ_T0068958.1 MGP_C3HHeJ_G0028838.1 mouse_genomes_project 4 151179852 151186677 - Pgd protein_coding retained_intron MGP_C3HHeJ_T0068959.1 MGP_C3HHeJ_G0028838.1 mouse_genomes_project 4 151180218 151181589 - Pgd protein_coding retained_intron MGP_C3HHeJ_T0068960.1 MGP_C3HHeJ_G0028838.1 mouse_genomes_project 4 151181318 151186566 - Pgd protein_coding retained_intron MGP_C3HHeJ_T0014382.1 MGP_C3HHeJ_G0012486.1 mouse_genomes_project 4 50882275 50883664 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066062.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98230030 98243989 + Inadl protein_coding processed_transcript MGP_C3HHeJ_T0066063.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98230036 98568195 + MGP_C3HHeJ_P0066063 Inadl protein_coding protein_coding MGP_C3HHeJ_T0066064.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98230100 98394488 + MGP_C3HHeJ_P0066064 Inadl protein_coding protein_coding MGP_C3HHeJ_T0066065.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98230100 98516727 + MGP_C3HHeJ_P0066065 Inadl protein_coding protein_coding MGP_C3HHeJ_T0066066.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98230137 98298493 + MGP_C3HHeJ_P0066066 Inadl protein_coding protein_coding MGP_C3HHeJ_T0066067.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98255253 98271614 + Inadl protein_coding processed_transcript MGP_C3HHeJ_T0066068.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98276694 98280876 + Inadl protein_coding processed_transcript MGP_C3HHeJ_T0066069.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98280814 98342904 + MGP_C3HHeJ_P0066069 Inadl protein_coding protein_coding MGP_C3HHeJ_T0066070.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98291699 98566950 + MGP_C3HHeJ_P0066070 Inadl protein_coding protein_coding MGP_C3HHeJ_T0066071.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98340326 98353450 + Inadl protein_coding processed_transcript MGP_C3HHeJ_T0066072.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98365492 98379051 + MGP_C3HHeJ_P0066072 Inadl protein_coding protein_coding MGP_C3HHeJ_T0066073.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98386569 98568195 + MGP_C3HHeJ_P0066073 Inadl protein_coding protein_coding MGP_C3HHeJ_T0066074.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98386808 98532296 + MGP_C3HHeJ_P0066074 Inadl protein_coding protein_coding MGP_C3HHeJ_T0099384.1 MGP_C3HHeJ_G0037578.1 mouse_genomes_project 4 120072143 120072250 + Rnu6-ps2 snRNA snRNA MGP_C3HHeJ_T0068772.1 MGP_C3HHeJ_G0028780.1 mouse_genomes_project 4 145606949 145613330 - MGP_C3HHeJ_P0068772 Gm10436 protein_coding protein_coding MGP_C3HHeJ_T0007918.1 MGP_C3HHeJ_G0006455.1 mouse_genomes_project 4 137968705 137974703 - Gm13003 lincRNA lincRNA MGP_C3HHeJ_T0065813.1 MGP_C3HHeJ_G0028101.1 mouse_genomes_project 4 82926785 83270050 + MGP_C3HHeJ_P0065813 Ccdc171 protein_coding protein_coding MGP_C3HHeJ_T0065814.1 MGP_C3HHeJ_G0028101.1 mouse_genomes_project 4 82926837 83269827 + MGP_C3HHeJ_P0065814 Ccdc171 protein_coding unknown_likely_coding MGP_C3HHeJ_T0065815.1 MGP_C3HHeJ_G0028101.1 mouse_genomes_project 4 82926854 82952851 + MGP_C3HHeJ_P0065815 Ccdc171 protein_coding protein_coding MGP_C3HHeJ_T0065816.1 MGP_C3HHeJ_G0028101.1 mouse_genomes_project 4 82926879 83269965 + MGP_C3HHeJ_P0065816 Ccdc171 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065817.1 MGP_C3HHeJ_G0028101.1 mouse_genomes_project 4 82947161 82959879 + Ccdc171 protein_coding processed_transcript MGP_C3HHeJ_T0065818.1 MGP_C3HHeJ_G0028101.1 mouse_genomes_project 4 83091847 83201168 + Ccdc171 protein_coding processed_transcript MGP_C3HHeJ_T0097904.1 MGP_C3HHeJ_G0036116.1 mouse_genomes_project 4 98600909 98600997 + pseudogene pseudogene MGP_C3HHeJ_T0004500.1 MGP_C3HHeJ_G0003903.1 mouse_genomes_project 4 143017250 143019911 + Ctrcos antisense antisense MGP_C3HHeJ_T0102011.1 MGP_C3HHeJ_G0039976.1 mouse_genomes_project 4 117601791 117605172 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017838.1 MGP_C3HHeJ_G0015316.1 mouse_genomes_project 4 89061753 89081623 + Gm12609 processed_transcript processed_transcript MGP_C3HHeJ_T0066178.1 MGP_C3HHeJ_G0028195.1 mouse_genomes_project 4 101930444 101934575 + MGP_C3HHeJ_P0066178 protein_coding protein_coding MGP_C3HHeJ_T0066179.1 MGP_C3HHeJ_G0028195.1 mouse_genomes_project 4 101930678 101933606 + protein_coding processed_transcript MGP_C3HHeJ_T0066180.1 MGP_C3HHeJ_G0028195.1 mouse_genomes_project 4 101932849 101934761 + MGP_C3HHeJ_P0066180 protein_coding protein_coding MGP_C3HHeJ_T0014426.1 MGP_C3HHeJ_G0012530.1 mouse_genomes_project 4 70401490 70401927 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099347.1 MGP_C3HHeJ_G0037541.1 mouse_genomes_project 4 43838751 43838858 + Gm22055 snRNA snRNA MGP_C3HHeJ_T0068987.1 MGP_C3HHeJ_G0028842.1 mouse_genomes_project 4 151499011 151516915 - MGP_C3HHeJ_P0068987 Nmnat1 protein_coding protein_coding MGP_C3HHeJ_T0068988.1 MGP_C3HHeJ_G0028842.1 mouse_genomes_project 4 151499997 151516911 - MGP_C3HHeJ_P0068988 Nmnat1 protein_coding protein_coding MGP_C3HHeJ_T0068989.1 MGP_C3HHeJ_G0028842.1 mouse_genomes_project 4 151500037 151516885 - MGP_C3HHeJ_P0068989 Nmnat1 protein_coding protein_coding MGP_C3HHeJ_T0068990.1 MGP_C3HHeJ_G0028842.1 mouse_genomes_project 4 151506145 151516876 - MGP_C3HHeJ_P0068990 Nmnat1 protein_coding protein_coding MGP_C3HHeJ_T0014508.1 MGP_C3HHeJ_G0012612.1 mouse_genomes_project 4 101117871 101118043 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014400.1 MGP_C3HHeJ_G0012504.1 mouse_genomes_project 4 54768627 54768943 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066741.1 MGP_C3HHeJ_G0028308.1 mouse_genomes_project 4 116266427 116275046 + MGP_C3HHeJ_P0066741 6430628N08Rik protein_coding protein_coding MGP_C3HHeJ_T0014609.1 MGP_C3HHeJ_G0012713.1 mouse_genomes_project 4 132634561 132634953 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004532.1 MGP_C3HHeJ_G0003927.1 mouse_genomes_project 4 156212732 156220706 - antisense antisense MGP_C3HHeJ_T0011468.1 MGP_C3HHeJ_G0009601.1 mouse_genomes_project 4 45960440 45960567 + Gm27601 misc_RNA misc_RNA MGP_C3HHeJ_T0065572.1 MGP_C3HHeJ_G0028046.1 mouse_genomes_project 4 61187711 61198191 + MGP_C3HHeJ_P0065572 Slc31a2 protein_coding protein_coding MGP_C3HHeJ_T0099366.1 MGP_C3HHeJ_G0037560.1 mouse_genomes_project 4 96718536 96718600 + Gm27521 snRNA snRNA MGP_C3HHeJ_T0014559.1 MGP_C3HHeJ_G0012663.1 mouse_genomes_project 4 118222263 118222733 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100684.1 MGP_C3HHeJ_G0038878.1 mouse_genomes_project 4 144446609 144446741 + Gm22039 snoRNA snoRNA MGP_C3HHeJ_T0004385.1 MGP_C3HHeJ_G0003816.1 mouse_genomes_project 4 55813300 55817784 + Gm12530 antisense antisense MGP_C3HHeJ_T0004371.1 MGP_C3HHeJ_G0003804.1 mouse_genomes_project 4 41825453 41835385 - Gm12473 antisense antisense MGP_C3HHeJ_T0017805.1 MGP_C3HHeJ_G0015295.1 mouse_genomes_project 4 8785125 8812767 + 1700123M08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017806.1 MGP_C3HHeJ_G0015295.1 mouse_genomes_project 4 8785134 8812486 + 1700123M08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017807.1 MGP_C3HHeJ_G0015295.1 mouse_genomes_project 4 8798722 8800220 + 1700123M08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0064493.1 MGP_C3HHeJ_G0027793.1 mouse_genomes_project 4 18930781 18969822 + MGP_C3HHeJ_P0064493 Coq3 protein_coding protein_coding MGP_C3HHeJ_T0064494.1 MGP_C3HHeJ_G0027793.1 mouse_genomes_project 4 18951723 18953457 + Coq3 protein_coding processed_transcript MGP_C3HHeJ_T0007706.1 MGP_C3HHeJ_G0006294.1 mouse_genomes_project 4 297173 304145 + 2210414B05Rik lincRNA lincRNA MGP_C3HHeJ_T0064524.1 MGP_C3HHeJ_G0027799.1 mouse_genomes_project 4 22039945 22046864 + MGP_C3HHeJ_P0064524 Ndufaf4 protein_coding protein_coding MGP_C3HHeJ_T0064525.1 MGP_C3HHeJ_G0027799.1 mouse_genomes_project 4 22039993 22045368 + Ndufaf4 protein_coding processed_transcript MGP_C3HHeJ_T0064526.1 MGP_C3HHeJ_G0027799.1 mouse_genomes_project 4 22040038 22045348 + MGP_C3HHeJ_P0064526 Ndufaf4 protein_coding protein_coding MGP_C3HHeJ_T0066814.1 MGP_C3HHeJ_G0028322.1 mouse_genomes_project 4 116949385 116954441 - MGP_C3HHeJ_P0066814 Tmem69 protein_coding protein_coding MGP_C3HHeJ_T0066815.1 MGP_C3HHeJ_G0028322.1 mouse_genomes_project 4 116949657 116951620 - Tmem69 protein_coding processed_transcript MGP_C3HHeJ_T0066816.1 MGP_C3HHeJ_G0028322.1 mouse_genomes_project 4 116951459 116954440 - MGP_C3HHeJ_P0066816 Tmem69 protein_coding protein_coding MGP_C3HHeJ_T0066360.1 MGP_C3HHeJ_G0028231.1 mouse_genomes_project 4 107340882 107360907 - MGP_C3HHeJ_P0066360 Lrrc42 protein_coding protein_coding MGP_C3HHeJ_T0066361.1 MGP_C3HHeJ_G0028231.1 mouse_genomes_project 4 107340885 107350894 - Lrrc42 protein_coding retained_intron MGP_C3HHeJ_T0066362.1 MGP_C3HHeJ_G0028231.1 mouse_genomes_project 4 107341127 107343349 - Lrrc42 protein_coding retained_intron MGP_C3HHeJ_T0066363.1 MGP_C3HHeJ_G0028231.1 mouse_genomes_project 4 107341307 107347120 - MGP_C3HHeJ_P0066363 Lrrc42 protein_coding protein_coding MGP_C3HHeJ_T0066364.1 MGP_C3HHeJ_G0028231.1 mouse_genomes_project 4 107354787 107360535 - MGP_C3HHeJ_P0066364 Lrrc42 protein_coding protein_coding MGP_C3HHeJ_T0066659.1 MGP_C3HHeJ_G0028281.1 mouse_genomes_project 4 112930226 112994008 - MGP_C3HHeJ_P0066659 Skint10 protein_coding protein_coding MGP_C3HHeJ_T0066660.1 MGP_C3HHeJ_G0028281.1 mouse_genomes_project 4 112988878 112994049 - MGP_C3HHeJ_P0066660 Skint10 protein_coding protein_coding MGP_C3HHeJ_T0066661.1 MGP_C3HHeJ_G0028281.1 mouse_genomes_project 4 112990302 112994010 - Skint10 protein_coding processed_transcript MGP_C3HHeJ_T0067199.1 MGP_C3HHeJ_G0028407.1 mouse_genomes_project 4 121095576 121100007 + MGP_C3HHeJ_P0067199 Slfnl1 protein_coding protein_coding MGP_C3HHeJ_T0011484.1 MGP_C3HHeJ_G0009617.1 mouse_genomes_project 4 115259221 115259319 + Gm24045 misc_RNA misc_RNA MGP_C3HHeJ_T0068558.1 MGP_C3HHeJ_G0028716.1 mouse_genomes_project 4 140592140 140639193 + MGP_C3HHeJ_P0068558 Iffo2 protein_coding protein_coding MGP_C3HHeJ_T0068559.1 MGP_C3HHeJ_G0028716.1 mouse_genomes_project 4 140592368 140639197 + MGP_C3HHeJ_P0068559 Iffo2 protein_coding protein_coding MGP_C3HHeJ_T0065088.1 MGP_C3HHeJ_G0027920.1 mouse_genomes_project 4 41888321 41894106 - MGP_C3HHeJ_P0065088 Olfr70 protein_coding protein_coding MGP_C3HHeJ_T0065467.1 MGP_C3HHeJ_G0028017.1 mouse_genomes_project 4 55832835 55946915 - MGP_C3HHeJ_P0065467 Ptpn3 protein_coding protein_coding MGP_C3HHeJ_T0065468.1 MGP_C3HHeJ_G0028017.1 mouse_genomes_project 4 55860310 55864019 - Ptpn3 protein_coding processed_transcript MGP_C3HHeJ_T0065469.1 MGP_C3HHeJ_G0028017.1 mouse_genomes_project 4 55886990 55945453 - MGP_C3HHeJ_P0065469 Ptpn3 protein_coding protein_coding MGP_C3HHeJ_T0065470.1 MGP_C3HHeJ_G0028017.1 mouse_genomes_project 4 55897591 55945993 - Ptpn3 protein_coding processed_transcript MGP_C3HHeJ_T0065471.1 MGP_C3HHeJ_G0028017.1 mouse_genomes_project 4 55907741 55946585 - MGP_C3HHeJ_P0065471 Ptpn3 protein_coding protein_coding MGP_C3HHeJ_T0065472.1 MGP_C3HHeJ_G0028017.1 mouse_genomes_project 4 55912734 55945834 - MGP_C3HHeJ_P0065472 Ptpn3 protein_coding protein_coding MGP_C3HHeJ_T0068041.1 MGP_C3HHeJ_G0028600.1 mouse_genomes_project 4 134221327 134297622 - MGP_C3HHeJ_P0068041 Arid1a protein_coding protein_coding MGP_C3HHeJ_T0068042.1 MGP_C3HHeJ_G0028600.1 mouse_genomes_project 4 134221327 134297622 - MGP_C3HHeJ_P0068042 Arid1a protein_coding protein_coding MGP_C3HHeJ_T0068043.1 MGP_C3HHeJ_G0028600.1 mouse_genomes_project 4 134222260 134301845 - MGP_C3HHeJ_P0068043 Arid1a protein_coding protein_coding MGP_C3HHeJ_T0068044.1 MGP_C3HHeJ_G0028600.1 mouse_genomes_project 4 134231801 134266537 - Arid1a protein_coding retained_intron MGP_C3HHeJ_T0068045.1 MGP_C3HHeJ_G0028600.1 mouse_genomes_project 4 134262834 134264256 - Arid1a protein_coding retained_intron MGP_C3HHeJ_T0068046.1 MGP_C3HHeJ_G0028600.1 mouse_genomes_project 4 134264258 134267366 - MGP_C3HHeJ_P0068046 Arid1a protein_coding protein_coding MGP_C3HHeJ_T0004376.1 MGP_C3HHeJ_G0003809.1 mouse_genomes_project 4 43278389 43282109 + 1700055D18Rik antisense antisense MGP_C3HHeJ_T0004377.1 MGP_C3HHeJ_G0003809.1 mouse_genomes_project 4 43279532 43281102 + 1700055D18Rik antisense antisense MGP_C3HHeJ_T0001379.1 MGP_C3HHeJ_G0001310.1 mouse_genomes_project 4 99172933 99175397 + TEC TEC MGP_C3HHeJ_T0067324.1 MGP_C3HHeJ_G0028444.1 mouse_genomes_project 4 123888143 123888662 - MGP_C3HHeJ_P0067324 4930535I16Rik protein_coding protein_coding MGP_C3HHeJ_T0100612.1 MGP_C3HHeJ_G0038806.1 mouse_genomes_project 4 31552798 31552885 + Gm22010 snoRNA snoRNA MGP_C3HHeJ_T0067878.1 MGP_C3HHeJ_G0028561.1 mouse_genomes_project 4 132635540 132676802 - MGP_C3HHeJ_P0067878 Gmeb1 protein_coding protein_coding MGP_C3HHeJ_T0067879.1 MGP_C3HHeJ_G0028561.1 mouse_genomes_project 4 132639591 132686513 - MGP_C3HHeJ_P0067879 Gmeb1 protein_coding protein_coding MGP_C3HHeJ_T0067880.1 MGP_C3HHeJ_G0028561.1 mouse_genomes_project 4 132641664 132676160 - MGP_C3HHeJ_P0067880 Gmeb1 protein_coding protein_coding MGP_C3HHeJ_T0067881.1 MGP_C3HHeJ_G0028561.1 mouse_genomes_project 4 132642316 132686594 - MGP_C3HHeJ_P0067881 Gmeb1 protein_coding protein_coding MGP_C3HHeJ_T0067882.1 MGP_C3HHeJ_G0028561.1 mouse_genomes_project 4 132648137 132652065 - Gmeb1 protein_coding retained_intron MGP_C3HHeJ_T0067883.1 MGP_C3HHeJ_G0028561.1 mouse_genomes_project 4 132653851 132669341 - Gmeb1 protein_coding retained_intron MGP_C3HHeJ_T0067884.1 MGP_C3HHeJ_G0028561.1 mouse_genomes_project 4 132676071 132678560 - Gmeb1 protein_coding processed_transcript MGP_C3HHeJ_T0067978.1 MGP_C3HHeJ_G0028582.1 mouse_genomes_project 4 133626596 133698576 + MGP_C3HHeJ_P0067978 Wasf2 protein_coding protein_coding MGP_C3HHeJ_T0067979.1 MGP_C3HHeJ_G0028582.1 mouse_genomes_project 4 133626631 133683521 + MGP_C3HHeJ_P0067979 Wasf2 protein_coding protein_coding MGP_C3HHeJ_T0067980.1 MGP_C3HHeJ_G0028582.1 mouse_genomes_project 4 133626720 133674084 + Wasf2 protein_coding processed_transcript MGP_C3HHeJ_T0067981.1 MGP_C3HHeJ_G0028582.1 mouse_genomes_project 4 133673524 133674136 + Wasf2 protein_coding processed_transcript MGP_C3HHeJ_T0067982.1 MGP_C3HHeJ_G0028582.1 mouse_genomes_project 4 133673894 133694876 + MGP_C3HHeJ_P0067982 Wasf2 protein_coding protein_coding MGP_C3HHeJ_T0067983.1 MGP_C3HHeJ_G0028582.1 mouse_genomes_project 4 133687487 133689019 + Wasf2 protein_coding processed_transcript MGP_C3HHeJ_T0068151.1 MGP_C3HHeJ_G0028621.1 mouse_genomes_project 4 134933420 134943535 + MGP_C3HHeJ_P0068151 Slc30a2 protein_coding protein_coding MGP_C3HHeJ_T0068152.1 MGP_C3HHeJ_G0028621.1 mouse_genomes_project 4 134933525 134943395 + MGP_C3HHeJ_P0068152 Slc30a2 protein_coding protein_coding MGP_C3HHeJ_T0102021.1 MGP_C3HHeJ_G0039986.1 mouse_genomes_project 4 140337461 140338652 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100629.1 MGP_C3HHeJ_G0038823.1 mouse_genomes_project 4 54042060 54042194 - Gm22150 snoRNA snoRNA MGP_C3HHeJ_T0069549.1 MGP_C3HHeJ_G0028944.1 mouse_genomes_project 4 158344237 158363969 + MGP_C3HHeJ_P0069549 Sdf4 protein_coding protein_coding MGP_C3HHeJ_T0069550.1 MGP_C3HHeJ_G0028944.1 mouse_genomes_project 4 158344276 158367330 + MGP_C3HHeJ_P0069550 Sdf4 protein_coding protein_coding MGP_C3HHeJ_T0069551.1 MGP_C3HHeJ_G0028944.1 mouse_genomes_project 4 158344535 158355434 + MGP_C3HHeJ_P0069551 Sdf4 protein_coding protein_coding MGP_C3HHeJ_T0069552.1 MGP_C3HHeJ_G0028944.1 mouse_genomes_project 4 158344742 158364077 + MGP_C3HHeJ_P0069552 Sdf4 protein_coding protein_coding MGP_C3HHeJ_T0069553.1 MGP_C3HHeJ_G0028944.1 mouse_genomes_project 4 158352487 158354025 + Sdf4 protein_coding retained_intron MGP_C3HHeJ_T0069554.1 MGP_C3HHeJ_G0028944.1 mouse_genomes_project 4 158362268 158363616 + Sdf4 protein_coding retained_intron MGP_C3HHeJ_T0014294.1 MGP_C3HHeJ_G0012398.1 mouse_genomes_project 4 21349464 21350666 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102014.1 MGP_C3HHeJ_G0039979.1 mouse_genomes_project 4 121984251 121987797 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014592.1 MGP_C3HHeJ_G0012696.1 mouse_genomes_project 4 125034090 125034414 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014497.1 MGP_C3HHeJ_G0012601.1 mouse_genomes_project 4 98101128 98101621 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068657.1 MGP_C3HHeJ_G0028741.1 mouse_genomes_project 4 142501123 142517086 + MGP_C3HHeJ_P0068657 Fam131c protein_coding protein_coding MGP_C3HHeJ_T0014373.1 MGP_C3HHeJ_G0012477.1 mouse_genomes_project 4 47169240 47169576 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102005.1 MGP_C3HHeJ_G0039970.1 mouse_genomes_project 4 113592978 113618684 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0064564.1 MGP_C3HHeJ_G0027809.1 mouse_genomes_project 4 30039286 30041403 - MGP_C3HHeJ_P0064564 Gja10 protein_coding protein_coding MGP_C3HHeJ_T0067533.1 MGP_C3HHeJ_G0028493.1 mouse_genomes_project 4 127461447 127465646 - MGP_C3HHeJ_P0067533 Gjb3 protein_coding protein_coding MGP_C3HHeJ_T0067534.1 MGP_C3HHeJ_G0028493.1 mouse_genomes_project 4 127461447 127467329 - MGP_C3HHeJ_P0067534 Gjb3 protein_coding protein_coding MGP_C3HHeJ_T0068462.1 MGP_C3HHeJ_G0028690.1 mouse_genomes_project 4 139216771 139225846 + MGP_C3HHeJ_P0068462 Ddost protein_coding protein_coding MGP_C3HHeJ_T0014344.1 MGP_C3HHeJ_G0012448.1 mouse_genomes_project 4 35590469 35600304 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099331.1 MGP_C3HHeJ_G0037525.1 mouse_genomes_project 4 22706137 22706299 - Gm25513 snRNA snRNA MGP_C3HHeJ_T0064418.1 MGP_C3HHeJ_G0027770.1 mouse_genomes_project 4 12149392 12171237 + MGP_C3HHeJ_P0064418 Tmem64 protein_coding protein_coding MGP_C3HHeJ_T0065984.1 MGP_C3HHeJ_G0028148.1 mouse_genomes_project 4 94646027 94660731 - MGP_C3HHeJ_P0065984 Eqtn protein_coding protein_coding MGP_C3HHeJ_T0065985.1 MGP_C3HHeJ_G0028148.1 mouse_genomes_project 4 94646191 94660682 - MGP_C3HHeJ_P0065985 Eqtn protein_coding protein_coding MGP_C3HHeJ_T0064600.1 MGP_C3HHeJ_G0027818.1 mouse_genomes_project 4 30650483 30665674 - MGP_C3HHeJ_P0064600 Pm20d2 protein_coding protein_coding MGP_C3HHeJ_T0064601.1 MGP_C3HHeJ_G0027818.1 mouse_genomes_project 4 30657883 30665978 - MGP_C3HHeJ_P0064601 Pm20d2 protein_coding protein_coding MGP_C3HHeJ_T0064432.1 MGP_C3HHeJ_G0027775.1 mouse_genomes_project 4 13030057 13069765 - MGP_C3HHeJ_P0064432 Ripk2 protein_coding protein_coding MGP_C3HHeJ_T0064433.1 MGP_C3HHeJ_G0027775.1 mouse_genomes_project 4 13030065 13069761 - MGP_C3HHeJ_P0064433 Ripk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0004509.1 MGP_C3HHeJ_G0003909.1 mouse_genomes_project 4 145918047 145919481 + Pramef12os antisense antisense MGP_C3HHeJ_T0064726.1 MGP_C3HHeJ_G0027849.1 mouse_genomes_project 4 38889243 38907923 + MGP_C3HHeJ_P0064726 Chmp5 protein_coding protein_coding MGP_C3HHeJ_T0010573.1 MGP_C3HHeJ_G0008706.1 mouse_genomes_project 4 158409621 158409691 - Mir200b miRNA miRNA MGP_C3HHeJ_T0066057.1 MGP_C3HHeJ_G0028165.1 mouse_genomes_project 4 98191414 98218837 - MGP_C3HHeJ_P0066057 Tm2d1 protein_coding protein_coding MGP_C3HHeJ_T0066058.1 MGP_C3HHeJ_G0028165.1 mouse_genomes_project 4 98191414 98218651 - MGP_C3HHeJ_P0066058 Tm2d1 protein_coding protein_coding MGP_C3HHeJ_T0066059.1 MGP_C3HHeJ_G0028165.1 mouse_genomes_project 4 98191414 98210619 - MGP_C3HHeJ_P0066059 Tm2d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066060.1 MGP_C3HHeJ_G0028165.1 mouse_genomes_project 4 98191414 98218897 - MGP_C3HHeJ_P0066060 Tm2d1 protein_coding protein_coding MGP_C3HHeJ_T0066061.1 MGP_C3HHeJ_G0028165.1 mouse_genomes_project 4 98191649 98218823 - MGP_C3HHeJ_P0066061 Tm2d1 protein_coding protein_coding MGP_C3HHeJ_T0065660.1 MGP_C3HHeJ_G0028066.1 mouse_genomes_project 4 62495894 62517965 + MGP_C3HHeJ_P0065660 protein_coding unknown_likely_coding MGP_C3HHeJ_T0065661.1 MGP_C3HHeJ_G0028066.1 mouse_genomes_project 4 62495970 62499606 + protein_coding processed_transcript MGP_C3HHeJ_T0065662.1 MGP_C3HHeJ_G0028066.1 mouse_genomes_project 4 62497341 62507137 + MGP_C3HHeJ_P0065662 protein_coding protein_coding MGP_C3HHeJ_T0065663.1 MGP_C3HHeJ_G0028066.1 mouse_genomes_project 4 62497341 62507168 + MGP_C3HHeJ_P0065663 protein_coding protein_coding MGP_C3HHeJ_T0067917.1 MGP_C3HHeJ_G0028569.1 mouse_genomes_project 4 132991816 132994744 - MGP_C3HHeJ_P0067917 Atpif1 protein_coding protein_coding MGP_C3HHeJ_T0067918.1 MGP_C3HHeJ_G0028569.1 mouse_genomes_project 4 132991816 132994915 - MGP_C3HHeJ_P0067918 Atpif1 protein_coding protein_coding MGP_C3HHeJ_T0067919.1 MGP_C3HHeJ_G0028569.1 mouse_genomes_project 4 132993743 132994851 - Atpif1 protein_coding retained_intron MGP_C3HHeJ_T0014267.1 MGP_C3HHeJ_G0012371.1 mouse_genomes_project 4 13301999 13303216 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065819.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83693753 84101724 - MGP_C3HHeJ_P0065819 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065820.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83693887 84101757 - MGP_C3HHeJ_P0065820 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065821.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83694010 84101965 - MGP_C3HHeJ_P0065821 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065822.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83694038 83710416 - MGP_C3HHeJ_P0065822 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065823.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83694268 84101776 - MGP_C3HHeJ_P0065823 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065824.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83694817 83710589 - MGP_C3HHeJ_P0065824 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065825.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83694903 83710805 - MGP_C3HHeJ_P0065825 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065826.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83695102 83710527 - MGP_C3HHeJ_P0065826 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065827.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83695102 83710527 - MGP_C3HHeJ_P0065827 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065828.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83711872 84101686 - MGP_C3HHeJ_P0065828 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065829.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83711872 84101686 - MGP_C3HHeJ_P0065829 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065830.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83711896 83930823 - Bnc2 protein_coding processed_transcript MGP_C3HHeJ_T0065831.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83712235 84101717 - MGP_C3HHeJ_P0065831 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065832.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83712262 84101687 - MGP_C3HHeJ_P0065832 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065833.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83712293 83957724 - Bnc2 protein_coding processed_transcript MGP_C3HHeJ_T0065834.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83810628 84101689 - Bnc2 protein_coding retained_intron MGP_C3HHeJ_T0065835.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83812872 84101687 - MGP_C3HHeJ_P0065835 Bnc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065836.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83812904 83970851 - Bnc2 protein_coding processed_transcript MGP_C3HHeJ_T0065837.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83812997 84101768 - MGP_C3HHeJ_P0065837 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065838.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83833119 83970522 - MGP_C3HHeJ_P0065838 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065839.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83833144 83948086 - Bnc2 protein_coding processed_transcript MGP_C3HHeJ_T0065840.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83970443 84101689 - MGP_C3HHeJ_P0065840 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0004417.1 MGP_C3HHeJ_G0003838.1 mouse_genomes_project 4 103012941 103021933 - BB031773 antisense antisense MGP_C3HHeJ_T0100639.1 MGP_C3HHeJ_G0038833.1 mouse_genomes_project 4 72029351 72029489 - Gm25653 snoRNA snoRNA MGP_C3HHeJ_T0014655.1 MGP_C3HHeJ_G0012759.1 mouse_genomes_project 4 151865687 151866244 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067184.1 MGP_C3HHeJ_G0028405.1 mouse_genomes_project 4 120827529 120847808 - MGP_C3HHeJ_P0067184 Foxo6 protein_coding protein_coding MGP_C3HHeJ_T0065097.1 MGP_C3HHeJ_G0027927.1 mouse_genomes_project 4 42076335 42150189 + Reck protein_coding processed_transcript MGP_C3HHeJ_T0065098.1 MGP_C3HHeJ_G0027927.1 mouse_genomes_project 4 42076335 42150250 + MGP_C3HHeJ_P0065098 Reck protein_coding protein_coding MGP_C3HHeJ_T0065099.1 MGP_C3HHeJ_G0027927.1 mouse_genomes_project 4 42145841 42147826 + Reck protein_coding processed_transcript MGP_C3HHeJ_T0066153.1 MGP_C3HHeJ_G0028186.1 mouse_genomes_project 4 101335271 101389661 + MGP_C3HHeJ_P0066153 Ak4 protein_coding protein_coding MGP_C3HHeJ_T0066154.1 MGP_C3HHeJ_G0028186.1 mouse_genomes_project 4 101335283 101389661 + MGP_C3HHeJ_P0066154 Ak4 protein_coding protein_coding MGP_C3HHeJ_T0066155.1 MGP_C3HHeJ_G0028186.1 mouse_genomes_project 4 101335313 101389661 + MGP_C3HHeJ_P0066155 Ak4 protein_coding protein_coding MGP_C3HHeJ_T0066156.1 MGP_C3HHeJ_G0028186.1 mouse_genomes_project 4 101335700 101382423 + MGP_C3HHeJ_P0066156 Ak4 protein_coding protein_coding MGP_C3HHeJ_T0066157.1 MGP_C3HHeJ_G0028186.1 mouse_genomes_project 4 101335727 101384844 + MGP_C3HHeJ_P0066157 Ak4 protein_coding protein_coding MGP_C3HHeJ_T0066158.1 MGP_C3HHeJ_G0028186.1 mouse_genomes_project 4 101336491 101386346 + Ak4 protein_coding processed_transcript MGP_C3HHeJ_T0066159.1 MGP_C3HHeJ_G0028186.1 mouse_genomes_project 4 101366436 101386445 + MGP_C3HHeJ_P0066159 Ak4 protein_coding protein_coding MGP_C3HHeJ_T0064541.1 MGP_C3HHeJ_G0027805.1 mouse_genomes_project 4 23518646 23520581 - MGP_C3HHeJ_P0064541 protein_coding protein_coding MGP_C3HHeJ_T0065706.1 MGP_C3HHeJ_G0028081.1 mouse_genomes_project 4 71973874 71975926 - MGP_C3HHeJ_P0065706 Aldoart1 protein_coding protein_coding MGP_C3HHeJ_T0065707.1 MGP_C3HHeJ_G0028081.1 mouse_genomes_project 4 71973874 71975924 - MGP_C3HHeJ_P0065707 Aldoart1 protein_coding protein_coding MGP_C3HHeJ_T0100675.1 MGP_C3HHeJ_G0038869.1 mouse_genomes_project 4 132741316 132741453 + Snora16a snoRNA snoRNA MGP_C3HHeJ_T0068378.1 MGP_C3HHeJ_G0028679.1 mouse_genomes_project 4 138316591 138318752 + MGP_C3HHeJ_P0068378 1700013G24Rik protein_coding protein_coding MGP_C3HHeJ_T0007785.1 MGP_C3HHeJ_G0006360.1 mouse_genomes_project 4 63209883 63233782 - Gm11217 lincRNA lincRNA MGP_C3HHeJ_T0004349.1 MGP_C3HHeJ_G0003787.1 mouse_genomes_project 4 8847167 8859649 + Gm11842 antisense antisense MGP_C3HHeJ_T0069558.1 MGP_C3HHeJ_G0028946.1 mouse_genomes_project 4 158379673 158382401 + MGP_C3HHeJ_P0069558 Tnfrsf18 protein_coding protein_coding MGP_C3HHeJ_T0069559.1 MGP_C3HHeJ_G0028946.1 mouse_genomes_project 4 158379841 158382397 + Tnfrsf18 protein_coding retained_intron MGP_C3HHeJ_T0069560.1 MGP_C3HHeJ_G0028946.1 mouse_genomes_project 4 158379851 158382397 + MGP_C3HHeJ_P0069560 Tnfrsf18 protein_coding protein_coding MGP_C3HHeJ_T0069561.1 MGP_C3HHeJ_G0028946.1 mouse_genomes_project 4 158379851 158382397 + MGP_C3HHeJ_P0069561 Tnfrsf18 protein_coding protein_coding MGP_C3HHeJ_T0069562.1 MGP_C3HHeJ_G0028946.1 mouse_genomes_project 4 158379887 158381881 + Tnfrsf18 protein_coding processed_transcript MGP_C3HHeJ_T0069563.1 MGP_C3HHeJ_G0028946.1 mouse_genomes_project 4 158381877 158382401 + Tnfrsf18 protein_coding processed_transcript MGP_C3HHeJ_T0067006.1 MGP_C3HHeJ_G0028357.1 mouse_genomes_project 4 118424766 118428367 - MGP_C3HHeJ_P0067006 Artn protein_coding protein_coding MGP_C3HHeJ_T0067007.1 MGP_C3HHeJ_G0028357.1 mouse_genomes_project 4 118424767 118428101 - MGP_C3HHeJ_P0067007 Artn protein_coding protein_coding MGP_C3HHeJ_T0067008.1 MGP_C3HHeJ_G0028357.1 mouse_genomes_project 4 118426645 118428081 - Artn protein_coding processed_transcript MGP_C3HHeJ_T0067009.1 MGP_C3HHeJ_G0028357.1 mouse_genomes_project 4 118426747 118428017 - Artn protein_coding processed_transcript MGP_C3HHeJ_T0004521.1 MGP_C3HHeJ_G0003918.1 mouse_genomes_project 4 151381521 151399071 + Ube4bos1 antisense antisense MGP_C3HHeJ_T0004522.1 MGP_C3HHeJ_G0003918.1 mouse_genomes_project 4 151381550 151392729 + Ube4bos1 antisense antisense MGP_C3HHeJ_T0011465.1 MGP_C3HHeJ_G0009598.1 mouse_genomes_project 4 32228997 32229304 + Gm22849 misc_RNA misc_RNA MGP_C3HHeJ_T0066265.1 MGP_C3HHeJ_G0028211.1 mouse_genomes_project 4 105202435 105279156 + MGP_C3HHeJ_P0066265 Plpp3 protein_coding protein_coding MGP_C3HHeJ_T0067948.1 MGP_C3HHeJ_G0028574.1 mouse_genomes_project 4 133204541 133228119 - MGP_C3HHeJ_P0067948 Smpdl3b protein_coding protein_coding MGP_C3HHeJ_T0067185.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 120967826 121013177 + Scmh1 protein_coding processed_transcript MGP_C3HHeJ_T0067186.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 120967852 121093587 + MGP_C3HHeJ_P0067186 Scmh1 protein_coding protein_coding MGP_C3HHeJ_T0067187.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 120967911 121021751 + Scmh1 protein_coding processed_transcript MGP_C3HHeJ_T0067188.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 120967926 121007373 + Scmh1 protein_coding processed_transcript MGP_C3HHeJ_T0067189.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 120967973 121021716 + MGP_C3HHeJ_P0067189 Scmh1 protein_coding protein_coding MGP_C3HHeJ_T0067190.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 121005787 121093587 + MGP_C3HHeJ_P0067190 Scmh1 protein_coding protein_coding MGP_C3HHeJ_T0067191.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 121011904 121093565 + MGP_C3HHeJ_P0067191 Scmh1 protein_coding protein_coding MGP_C3HHeJ_T0067192.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 121020711 121092662 + MGP_C3HHeJ_P0067192 Scmh1 protein_coding protein_coding MGP_C3HHeJ_T0067193.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 121066907 121093587 + Scmh1 protein_coding processed_transcript MGP_C3HHeJ_T0067194.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 121068436 121085655 + MGP_C3HHeJ_P0067194 Scmh1 protein_coding protein_coding MGP_C3HHeJ_T0067195.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 121080730 121093587 + Scmh1 protein_coding processed_transcript MGP_C3HHeJ_T0067196.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 121080783 121093204 + Scmh1 protein_coding processed_transcript MGP_C3HHeJ_T0067197.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 121091231 121092623 + Scmh1 protein_coding processed_transcript MGP_C3HHeJ_T0067198.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 121092557 121093589 + Scmh1 protein_coding processed_transcript MGP_C3HHeJ_T0014404.1 MGP_C3HHeJ_G0012508.1 mouse_genomes_project 4 57155069 57155643 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066812.1 MGP_C3HHeJ_G0028321.1 mouse_genomes_project 4 116910003 116941923 + MGP_C3HHeJ_P0066812 Ipp protein_coding protein_coding MGP_C3HHeJ_T0066813.1 MGP_C3HHeJ_G0028321.1 mouse_genomes_project 4 116910006 116941931 + MGP_C3HHeJ_P0066813 Ipp protein_coding protein_coding MGP_C3HHeJ_T0014406.1 MGP_C3HHeJ_G0012510.1 mouse_genomes_project 4 57766170 57766915 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014430.1 MGP_C3HHeJ_G0012534.1 mouse_genomes_project 4 72016939 72017537 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017871.1 MGP_C3HHeJ_G0015337.1 mouse_genomes_project 4 126406685 126408324 + Gm12945 processed_transcript processed_transcript MGP_C3HHeJ_T0007888.1 MGP_C3HHeJ_G0006436.1 mouse_genomes_project 4 131103919 131108346 - Gm26516 lincRNA lincRNA MGP_C3HHeJ_T0069139.1 MGP_C3HHeJ_G0028872.1 mouse_genomes_project 4 154218183 154231090 + Nol9 protein_coding retained_intron MGP_C3HHeJ_T0069140.1 MGP_C3HHeJ_G0028872.1 mouse_genomes_project 4 154218189 154241313 + MGP_C3HHeJ_P0069140 Nol9 protein_coding protein_coding MGP_C3HHeJ_T0069141.1 MGP_C3HHeJ_G0028872.1 mouse_genomes_project 4 154218198 154235255 + Nol9 protein_coding retained_intron MGP_C3HHeJ_T0069142.1 MGP_C3HHeJ_G0028872.1 mouse_genomes_project 4 154218198 154242783 + MGP_C3HHeJ_P0069142 Nol9 protein_coding protein_coding MGP_C3HHeJ_T0069143.1 MGP_C3HHeJ_G0028872.1 mouse_genomes_project 4 154218225 154241331 + MGP_C3HHeJ_P0069143 Nol9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014524.1 MGP_C3HHeJ_G0012628.1 mouse_genomes_project 4 106319215 106319478 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064738.1 MGP_C3HHeJ_G0027852.1 mouse_genomes_project 4 39042547 39048006 - MGP_C3HHeJ_P0064738 Aqp3 protein_coding protein_coding MGP_C3HHeJ_T0064739.1 MGP_C3HHeJ_G0027852.1 mouse_genomes_project 4 39043604 39044271 - Aqp3 protein_coding retained_intron MGP_C3HHeJ_T0014245.1 MGP_C3HHeJ_G0012349.1 mouse_genomes_project 4 7907743 7908418 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065389.1 MGP_C3HHeJ_G0027996.1 mouse_genomes_project 4 51514244 51515189 + MGP_C3HHeJ_P0065389 Olfr270 protein_coding protein_coding MGP_C3HHeJ_T0065390.1 MGP_C3HHeJ_G0027996.1 mouse_genomes_project 4 51514250 51515189 + MGP_C3HHeJ_P0065390 Olfr270 protein_coding protein_coding MGP_C3HHeJ_T0014588.1 MGP_C3HHeJ_G0012692.1 mouse_genomes_project 4 123803273 123804670 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098473.1 MGP_C3HHeJ_G0036678.1 mouse_genomes_project 4 94901324 94910915 + sense_intronic sense_intronic MGP_C3HHeJ_T0067390.1 MGP_C3HHeJ_G0028463.1 mouse_genomes_project 4 126074691 126094863 + MGP_C3HHeJ_P0067390 Csf3r protein_coding protein_coding MGP_C3HHeJ_T0067391.1 MGP_C3HHeJ_G0028463.1 mouse_genomes_project 4 126074867 126082036 + Csf3r protein_coding processed_transcript MGP_C3HHeJ_T0067392.1 MGP_C3HHeJ_G0028463.1 mouse_genomes_project 4 126077433 126094862 + MGP_C3HHeJ_P0067392 Csf3r protein_coding protein_coding MGP_C3HHeJ_T0067393.1 MGP_C3HHeJ_G0028463.1 mouse_genomes_project 4 126088337 126094246 + Csf3r protein_coding processed_transcript MGP_C3HHeJ_T0067056.1 MGP_C3HHeJ_G0028367.1 mouse_genomes_project 4 119028961 119031819 + MGP_C3HHeJ_P0067056 2610528J11Rik protein_coding protein_coding MGP_C3HHeJ_T0067057.1 MGP_C3HHeJ_G0028367.1 mouse_genomes_project 4 119029205 119032192 + MGP_C3HHeJ_P0067057 2610528J11Rik protein_coding protein_coding MGP_C3HHeJ_T0068138.1 MGP_C3HHeJ_G0028617.1 mouse_genomes_project 4 134839697 134842691 - MGP_C3HHeJ_P0068138 Grrp1 protein_coding protein_coding MGP_C3HHeJ_T0068139.1 MGP_C3HHeJ_G0028617.1 mouse_genomes_project 4 134840293 134841607 - Grrp1 protein_coding processed_transcript MGP_C3HHeJ_T0014599.1 MGP_C3HHeJ_G0012703.1 mouse_genomes_project 4 127273238 127273448 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065321.1 MGP_C3HHeJ_G0027973.1 mouse_genomes_project 4 46670320 46695164 + Invs protein_coding processed_transcript MGP_C3HHeJ_T0065322.1 MGP_C3HHeJ_G0027973.1 mouse_genomes_project 4 46670360 46671613 + Invs protein_coding processed_transcript MGP_C3HHeJ_T0065323.1 MGP_C3HHeJ_G0027973.1 mouse_genomes_project 4 46670362 46829508 + MGP_C3HHeJ_P0065323 Invs protein_coding protein_coding MGP_C3HHeJ_T0065324.1 MGP_C3HHeJ_G0027973.1 mouse_genomes_project 4 46670376 46677667 + Invs protein_coding processed_transcript MGP_C3HHeJ_T0065325.1 MGP_C3HHeJ_G0027973.1 mouse_genomes_project 4 46670386 46824905 + MGP_C3HHeJ_P0065325 Invs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065326.1 MGP_C3HHeJ_G0027973.1 mouse_genomes_project 4 46777802 46791729 + Invs protein_coding processed_transcript MGP_C3HHeJ_T0064206.1 MGP_C3HHeJ_G0027725.1 mouse_genomes_project 4 531711 533160 - MGP_C3HHeJ_P0064206 Mos protein_coding protein_coding MGP_C3HHeJ_T0014394.1 MGP_C3HHeJ_G0012498.1 mouse_genomes_project 4 53726115 53726724 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004363.1 MGP_C3HHeJ_G0003797.1 mouse_genomes_project 4 38178252 38179610 + antisense antisense MGP_C3HHeJ_T0068287.1 MGP_C3HHeJ_G0028653.1 mouse_genomes_project 4 136696139 136700546 - MGP_C3HHeJ_P0068287 Lypla2 protein_coding protein_coding MGP_C3HHeJ_T0068288.1 MGP_C3HHeJ_G0028653.1 mouse_genomes_project 4 136696139 136699849 - MGP_C3HHeJ_P0068288 Lypla2 protein_coding protein_coding MGP_C3HHeJ_T0068289.1 MGP_C3HHeJ_G0028653.1 mouse_genomes_project 4 136696616 136698386 - Lypla2 protein_coding retained_intron MGP_C3HHeJ_T0068290.1 MGP_C3HHeJ_G0028653.1 mouse_genomes_project 4 136696679 136700508 - Lypla2 protein_coding retained_intron MGP_C3HHeJ_T0068291.1 MGP_C3HHeJ_G0028653.1 mouse_genomes_project 4 136698565 136700523 - Lypla2 protein_coding retained_intron MGP_C3HHeJ_T0010511.1 MGP_C3HHeJ_G0008644.1 mouse_genomes_project 4 62173174 62173256 + Mir455 miRNA miRNA MGP_C3HHeJ_T0065935.1 MGP_C3HHeJ_G0028128.1 mouse_genomes_project 4 88445024 88445597 + MGP_C3HHeJ_P0065935 protein_coding protein_coding MGP_C3HHeJ_T0066790.1 MGP_C3HHeJ_G0028317.1 mouse_genomes_project 4 116547581 116553313 - MGP_C3HHeJ_P0066790 Tspan1 protein_coding protein_coding MGP_C3HHeJ_T0066791.1 MGP_C3HHeJ_G0028317.1 mouse_genomes_project 4 116549020 116553314 - MGP_C3HHeJ_P0066791 Tspan1 protein_coding protein_coding MGP_C3HHeJ_T0066792.1 MGP_C3HHeJ_G0028317.1 mouse_genomes_project 4 116549044 116550546 - Tspan1 protein_coding retained_intron MGP_C3HHeJ_T0068786.1 MGP_C3HHeJ_G0028790.1 mouse_genomes_project 4 145873245 145887893 - MGP_C3HHeJ_P0068786 Gm13125 protein_coding protein_coding MGP_C3HHeJ_T0068249.1 MGP_C3HHeJ_G0028642.1 mouse_genomes_project 4 136189796 136215832 + Stpg1 protein_coding processed_transcript MGP_C3HHeJ_T0068250.1 MGP_C3HHeJ_G0028642.1 mouse_genomes_project 4 136190980 136235668 + Stpg1 protein_coding processed_transcript MGP_C3HHeJ_T0068251.1 MGP_C3HHeJ_G0028642.1 mouse_genomes_project 4 136190990 136239481 + MGP_C3HHeJ_P0068251 Stpg1 protein_coding protein_coding MGP_C3HHeJ_T0064744.1 MGP_C3HHeJ_G0027854.1 mouse_genomes_project 4 39088519 39150079 + MGP_C3HHeJ_P0064744 Ube2r2 protein_coding protein_coding MGP_C3HHeJ_T0064745.1 MGP_C3HHeJ_G0027854.1 mouse_genomes_project 4 39139638 39147522 + Ube2r2 protein_coding retained_intron MGP_C3HHeJ_T0064746.1 MGP_C3HHeJ_G0027854.1 mouse_genomes_project 4 39145594 39147735 + Ube2r2 protein_coding retained_intron MGP_C3HHeJ_T0069043.1 MGP_C3HHeJ_G0028854.1 mouse_genomes_project 4 152260737 152278369 - MGP_C3HHeJ_P0069043 Car6 protein_coding protein_coding MGP_C3HHeJ_T0069044.1 MGP_C3HHeJ_G0028854.1 mouse_genomes_project 4 152260737 152274625 - MGP_C3HHeJ_P0069044 Car6 protein_coding protein_coding MGP_C3HHeJ_T0069045.1 MGP_C3HHeJ_G0028854.1 mouse_genomes_project 4 152260934 152272278 - Car6 protein_coding processed_transcript MGP_C3HHeJ_T0069046.1 MGP_C3HHeJ_G0028854.1 mouse_genomes_project 4 152262003 152274358 - Car6 protein_coding processed_transcript MGP_C3HHeJ_T0069465.1 MGP_C3HHeJ_G0028927.1 mouse_genomes_project 4 158073369 158094462 - MGP_C3HHeJ_P0069465 Atad3a protein_coding protein_coding MGP_C3HHeJ_T0069466.1 MGP_C3HHeJ_G0028927.1 mouse_genomes_project 4 158073562 158079079 - Atad3a protein_coding retained_intron MGP_C3HHeJ_T0069467.1 MGP_C3HHeJ_G0028927.1 mouse_genomes_project 4 158078801 158082927 - Atad3a protein_coding retained_intron MGP_C3HHeJ_T0069468.1 MGP_C3HHeJ_G0028927.1 mouse_genomes_project 4 158079935 158082795 - Atad3a protein_coding retained_intron MGP_C3HHeJ_T0069469.1 MGP_C3HHeJ_G0028927.1 mouse_genomes_project 4 158083819 158089452 - MGP_C3HHeJ_P0069469 Atad3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069470.1 MGP_C3HHeJ_G0028927.1 mouse_genomes_project 4 158084121 158088143 - MGP_C3HHeJ_P0069470 Atad3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069471.1 MGP_C3HHeJ_G0028927.1 mouse_genomes_project 4 158085101 158094297 - MGP_C3HHeJ_P0069471 Atad3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069472.1 MGP_C3HHeJ_G0028927.1 mouse_genomes_project 4 158086991 158094437 - MGP_C3HHeJ_P0069472 Atad3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069473.1 MGP_C3HHeJ_G0028927.1 mouse_genomes_project 4 158089213 158094456 - Atad3a protein_coding retained_intron MGP_C3HHeJ_T0014571.1 MGP_C3HHeJ_G0012675.1 mouse_genomes_project 4 120063269 120064226 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064989.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41621686 41629842 - MGP_C3HHeJ_P0064989 Cd72 protein_coding protein_coding MGP_C3HHeJ_T0064990.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41622948 41629778 - MGP_C3HHeJ_P0064990 Cd72 protein_coding protein_coding MGP_C3HHeJ_T0064991.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41622948 41629799 - MGP_C3HHeJ_P0064991 Cd72 protein_coding protein_coding MGP_C3HHeJ_T0064992.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41622948 41629843 - MGP_C3HHeJ_P0064992 Cd72 protein_coding protein_coding MGP_C3HHeJ_T0064993.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41622959 41629841 - MGP_C3HHeJ_P0064993 Cd72 protein_coding protein_coding MGP_C3HHeJ_T0064994.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41623254 41625157 - Cd72 protein_coding retained_intron MGP_C3HHeJ_T0064995.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41625059 41627587 - Cd72 protein_coding retained_intron MGP_C3HHeJ_T0064996.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41627524 41629827 - Cd72 protein_coding retained_intron MGP_C3HHeJ_T0064997.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41627535 41629538 - Cd72 protein_coding processed_transcript MGP_C3HHeJ_T0064998.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41627815 41629841 - Cd72 protein_coding processed_transcript MGP_C3HHeJ_T0065531.1 MGP_C3HHeJ_G0028034.1 mouse_genomes_project 4 57718431 57790458 - MGP_C3HHeJ_P0065531 AI481877 protein_coding protein_coding MGP_C3HHeJ_T0065532.1 MGP_C3HHeJ_G0028034.1 mouse_genomes_project 4 57757307 57787766 - AI481877 protein_coding retained_intron MGP_C3HHeJ_T0014261.1 MGP_C3HHeJ_G0012365.1 mouse_genomes_project 4 12860895 12861252 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014223.1 MGP_C3HHeJ_G0012327.1 mouse_genomes_project 4 367369 367969 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066258.1 MGP_C3HHeJ_G0028207.1 mouse_genomes_project 4 104855593 104893059 - C8a protein_coding processed_transcript MGP_C3HHeJ_T0066259.1 MGP_C3HHeJ_G0028207.1 mouse_genomes_project 4 104855593 104912866 - MGP_C3HHeJ_P0066259 C8a protein_coding protein_coding MGP_C3HHeJ_T0066260.1 MGP_C3HHeJ_G0028207.1 mouse_genomes_project 4 104857423 104912824 - MGP_C3HHeJ_P0066260 C8a protein_coding protein_coding MGP_C3HHeJ_T0014347.1 MGP_C3HHeJ_G0012451.1 mouse_genomes_project 4 36552653 36553589 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007783.1 MGP_C3HHeJ_G0006358.1 mouse_genomes_project 4 62569291 62574313 + Gm11482 lincRNA lincRNA MGP_C3HHeJ_T0067984.1 MGP_C3HHeJ_G0028583.1 mouse_genomes_project 4 133708074 133710592 - MGP_C3HHeJ_P0067984 Gpr3 protein_coding protein_coding MGP_C3HHeJ_T0067985.1 MGP_C3HHeJ_G0028583.1 mouse_genomes_project 4 133709101 133711270 - MGP_C3HHeJ_P0067985 Gpr3 protein_coding protein_coding MGP_C3HHeJ_T0067986.1 MGP_C3HHeJ_G0028583.1 mouse_genomes_project 4 133709804 133711048 - MGP_C3HHeJ_P0067986 Gpr3 protein_coding protein_coding MGP_C3HHeJ_T0069503.1 MGP_C3HHeJ_G0028935.1 mouse_genomes_project 4 158187051 158199069 + MGP_C3HHeJ_P0069503 Dvl1 protein_coding protein_coding MGP_C3HHeJ_T0069504.1 MGP_C3HHeJ_G0028935.1 mouse_genomes_project 4 158187110 158198644 + MGP_C3HHeJ_P0069504 Dvl1 protein_coding protein_coding MGP_C3HHeJ_T0069505.1 MGP_C3HHeJ_G0028935.1 mouse_genomes_project 4 158187115 158199068 + Dvl1 protein_coding retained_intron MGP_C3HHeJ_T0069506.1 MGP_C3HHeJ_G0028935.1 mouse_genomes_project 4 158187215 158199069 + Dvl1 protein_coding retained_intron MGP_C3HHeJ_T0069507.1 MGP_C3HHeJ_G0028935.1 mouse_genomes_project 4 158187235 158199069 + Dvl1 protein_coding retained_intron MGP_C3HHeJ_T0069508.1 MGP_C3HHeJ_G0028935.1 mouse_genomes_project 4 158187320 158199069 + Dvl1 protein_coding retained_intron MGP_C3HHeJ_T0069509.1 MGP_C3HHeJ_G0028935.1 mouse_genomes_project 4 158193178 158193720 + Dvl1 protein_coding processed_transcript MGP_C3HHeJ_T0069510.1 MGP_C3HHeJ_G0028935.1 mouse_genomes_project 4 158194339 158195998 + Dvl1 protein_coding retained_intron MGP_C3HHeJ_T0064984.1 MGP_C3HHeJ_G0027903.1 mouse_genomes_project 4 41617198 41623289 + MGP_C3HHeJ_P0064984 Tesk1 protein_coding protein_coding MGP_C3HHeJ_T0064985.1 MGP_C3HHeJ_G0027903.1 mouse_genomes_project 4 41618544 41623019 + MGP_C3HHeJ_P0064985 Tesk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064986.1 MGP_C3HHeJ_G0027903.1 mouse_genomes_project 4 41619798 41620604 + Tesk1 protein_coding retained_intron MGP_C3HHeJ_T0064987.1 MGP_C3HHeJ_G0027903.1 mouse_genomes_project 4 41619931 41621041 + Tesk1 protein_coding retained_intron MGP_C3HHeJ_T0064988.1 MGP_C3HHeJ_G0027903.1 mouse_genomes_project 4 41620173 41621235 + Tesk1 protein_coding retained_intron MGP_C3HHeJ_T0065781.1 MGP_C3HHeJ_G0028096.1 mouse_genomes_project 4 82250324 82253708 - MGP_C3HHeJ_P0065781 Cer1 protein_coding protein_coding MGP_C3HHeJ_T0068596.1 MGP_C3HHeJ_G0028728.1 mouse_genomes_project 4 141924228 141958248 - MGP_C3HHeJ_P0068596 Padi1 protein_coding protein_coding MGP_C3HHeJ_T0014362.1 MGP_C3HHeJ_G0012466.1 mouse_genomes_project 4 42616016 42616432 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010504.1 MGP_C3HHeJ_G0008637.1 mouse_genomes_project 4 42449303 42449376 - Mir5106 miRNA miRNA MGP_C3HHeJ_T0099338.1 MGP_C3HHeJ_G0037532.1 mouse_genomes_project 4 37176580 37176744 - Gm25581 snRNA snRNA MGP_C3HHeJ_T0014411.1 MGP_C3HHeJ_G0012515.1 mouse_genomes_project 4 61860755 61861010 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007929.1 MGP_C3HHeJ_G0006465.1 mouse_genomes_project 4 141520552 141545466 + Gm13026 lincRNA lincRNA MGP_C3HHeJ_T0004362.1 MGP_C3HHeJ_G0003796.1 mouse_genomes_project 4 37307768 37359996 - Gm17094 antisense antisense MGP_C3HHeJ_T0065962.1 MGP_C3HHeJ_G0028139.1 mouse_genomes_project 4 91880143 91883036 - MGP_C3HHeJ_P0065962 Izumo3 protein_coding protein_coding MGP_C3HHeJ_T0065963.1 MGP_C3HHeJ_G0028139.1 mouse_genomes_project 4 91880152 91883049 - MGP_C3HHeJ_P0065963 Izumo3 protein_coding protein_coding MGP_C3HHeJ_T0007817.1 MGP_C3HHeJ_G0006387.1 mouse_genomes_project 4 99490522 99494038 + Gm12690 lincRNA lincRNA MGP_C3HHeJ_T0065688.1 MGP_C3HHeJ_G0028077.1 mouse_genomes_project 4 69281751 69486833 - MGP_C3HHeJ_P0065688 Cdk5rap2 protein_coding protein_coding MGP_C3HHeJ_T0065689.1 MGP_C3HHeJ_G0028077.1 mouse_genomes_project 4 69287913 69486808 - MGP_C3HHeJ_P0065689 Cdk5rap2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065690.1 MGP_C3HHeJ_G0028077.1 mouse_genomes_project 4 69303135 69338404 - MGP_C3HHeJ_P0065690 Cdk5rap2 protein_coding protein_coding MGP_C3HHeJ_T0065691.1 MGP_C3HHeJ_G0028077.1 mouse_genomes_project 4 69307256 69308638 - Cdk5rap2 protein_coding processed_transcript MGP_C3HHeJ_T0065692.1 MGP_C3HHeJ_G0028077.1 mouse_genomes_project 4 69474267 69478923 - Cdk5rap2 protein_coding processed_transcript MGP_C3HHeJ_T0098475.1 MGP_C3HHeJ_G0036680.1 mouse_genomes_project 4 108669379 108672428 + Gm12737 sense_intronic sense_intronic MGP_C3HHeJ_T0068162.1 MGP_C3HHeJ_G0028624.1 mouse_genomes_project 4 135076119 135078414 + Stmn1 protein_coding processed_transcript MGP_C3HHeJ_T0068163.1 MGP_C3HHeJ_G0028624.1 mouse_genomes_project 4 135076126 135080864 + MGP_C3HHeJ_P0068163 Stmn1 protein_coding protein_coding MGP_C3HHeJ_T0068164.1 MGP_C3HHeJ_G0028624.1 mouse_genomes_project 4 135077472 135081370 + MGP_C3HHeJ_P0068164 Stmn1 protein_coding protein_coding MGP_C3HHeJ_T0014276.1 MGP_C3HHeJ_G0012380.1 mouse_genomes_project 4 15826468 15827833 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014488.1 MGP_C3HHeJ_G0012592.1 mouse_genomes_project 4 93358785 93359095 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066049.1 MGP_C3HHeJ_G0028164.1 mouse_genomes_project 4 97590257 97822023 + MGP_C3HHeJ_P0066049 Nfia protein_coding protein_coding MGP_C3HHeJ_T0066050.1 MGP_C3HHeJ_G0028164.1 mouse_genomes_project 4 97595931 97944090 + MGP_C3HHeJ_P0066050 Nfia protein_coding protein_coding MGP_C3HHeJ_T0066051.1 MGP_C3HHeJ_G0028164.1 mouse_genomes_project 4 97595944 97944093 + MGP_C3HHeJ_P0066051 Nfia protein_coding protein_coding MGP_C3HHeJ_T0066052.1 MGP_C3HHeJ_G0028164.1 mouse_genomes_project 4 97596121 97944090 + MGP_C3HHeJ_P0066052 Nfia protein_coding protein_coding MGP_C3HHeJ_T0066053.1 MGP_C3HHeJ_G0028164.1 mouse_genomes_project 4 97596137 97944090 + MGP_C3HHeJ_P0066053 Nfia protein_coding protein_coding MGP_C3HHeJ_T0066054.1 MGP_C3HHeJ_G0028164.1 mouse_genomes_project 4 97596152 97944090 + MGP_C3HHeJ_P0066054 Nfia protein_coding protein_coding MGP_C3HHeJ_T0066055.1 MGP_C3HHeJ_G0028164.1 mouse_genomes_project 4 97698933 97888383 + MGP_C3HHeJ_P0066055 Nfia protein_coding protein_coding MGP_C3HHeJ_T0066056.1 MGP_C3HHeJ_G0028164.1 mouse_genomes_project 4 97731156 97865019 + Nfia protein_coding processed_transcript MGP_C3HHeJ_T0102008.1 MGP_C3HHeJ_G0039973.1 mouse_genomes_project 4 115451331 115453151 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100608.1 MGP_C3HHeJ_G0038802.1 mouse_genomes_project 4 19483813 19483946 + Gm24607 snoRNA snoRNA MGP_C3HHeJ_T0067901.1 MGP_C3HHeJ_G0028565.1 mouse_genomes_project 4 132765773 132779314 - MGP_C3HHeJ_P0067901 Rcc1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067902.1 MGP_C3HHeJ_G0028565.1 mouse_genomes_project 4 132765779 132779558 - MGP_C3HHeJ_P0067902 Rcc1 protein_coding protein_coding MGP_C3HHeJ_T0067903.1 MGP_C3HHeJ_G0028565.1 mouse_genomes_project 4 132771508 132773785 - Rcc1 protein_coding processed_transcript MGP_C3HHeJ_T0067904.1 MGP_C3HHeJ_G0028565.1 mouse_genomes_project 4 132771675 132790922 - MGP_C3HHeJ_P0067904 Rcc1 protein_coding protein_coding MGP_C3HHeJ_T0067905.1 MGP_C3HHeJ_G0028565.1 mouse_genomes_project 4 132772567 132779554 - Rcc1 protein_coding retained_intron MGP_C3HHeJ_T0067906.1 MGP_C3HHeJ_G0028565.1 mouse_genomes_project 4 132772813 132779210 - Rcc1 protein_coding retained_intron MGP_C3HHeJ_T0067907.1 MGP_C3HHeJ_G0028565.1 mouse_genomes_project 4 132773343 132779545 - Rcc1 protein_coding retained_intron MGP_C3HHeJ_T0101994.1 MGP_C3HHeJ_G0039959.1 mouse_genomes_project 4 88270505 88271072 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0069312.1 MGP_C3HHeJ_G0028899.1 mouse_genomes_project 4 156628630 156642428 + MGP_C3HHeJ_P0069312 B230104I21Rik protein_coding protein_coding MGP_C3HHeJ_T0014340.1 MGP_C3HHeJ_G0012444.1 mouse_genomes_project 4 33012704 33013272 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099391.1 MGP_C3HHeJ_G0037585.1 mouse_genomes_project 4 127421418 127421521 - Gm22221 snRNA snRNA MGP_C3HHeJ_T0068074.1 MGP_C3HHeJ_G0028604.1 mouse_genomes_project 4 134567782 134582688 - MGP_C3HHeJ_P0068074 Lin28a protein_coding protein_coding MGP_C3HHeJ_T0068075.1 MGP_C3HHeJ_G0028604.1 mouse_genomes_project 4 134570324 134576180 - MGP_C3HHeJ_P0068075 Lin28a protein_coding protein_coding MGP_C3HHeJ_T0068076.1 MGP_C3HHeJ_G0028604.1 mouse_genomes_project 4 134570330 134573231 - MGP_C3HHeJ_P0068076 Lin28a protein_coding protein_coding MGP_C3HHeJ_T0068077.1 MGP_C3HHeJ_G0028604.1 mouse_genomes_project 4 134571952 134582229 - MGP_C3HHeJ_P0068077 Lin28a protein_coding protein_coding MGP_C3HHeJ_T0102010.1 MGP_C3HHeJ_G0039975.1 mouse_genomes_project 4 115936442 115937281 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0065201.1 MGP_C3HHeJ_G0027943.1 mouse_genomes_project 4 43617519 43661522 + MGP_C3HHeJ_P0065201 Dcaf10 protein_coding protein_coding MGP_C3HHeJ_T0065202.1 MGP_C3HHeJ_G0027943.1 mouse_genomes_project 4 43617538 43649865 + Dcaf10 protein_coding processed_transcript MGP_C3HHeJ_T0065203.1 MGP_C3HHeJ_G0027943.1 mouse_genomes_project 4 43617600 43656708 + Dcaf10 protein_coding processed_transcript MGP_C3HHeJ_T0065204.1 MGP_C3HHeJ_G0027943.1 mouse_genomes_project 4 43649731 43657419 + MGP_C3HHeJ_P0065204 Dcaf10 protein_coding protein_coding MGP_C3HHeJ_T0004447.1 MGP_C3HHeJ_G0003861.1 mouse_genomes_project 4 119657407 119658117 - Gm12867 antisense antisense MGP_C3HHeJ_T0014324.1 MGP_C3HHeJ_G0012428.1 mouse_genomes_project 4 29566228 29566665 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014611.1 MGP_C3HHeJ_G0012715.1 mouse_genomes_project 4 133278022 133278307 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065850.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85548929 85585861 + Adamtsl1 protein_coding retained_intron MGP_C3HHeJ_T0065851.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85548929 85939454 + MGP_C3HHeJ_P0065851 Adamtsl1 protein_coding protein_coding MGP_C3HHeJ_T0065852.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85548937 85753426 + MGP_C3HHeJ_P0065852 Adamtsl1 protein_coding protein_coding MGP_C3HHeJ_T0065853.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85548942 85939457 + MGP_C3HHeJ_P0065853 Adamtsl1 protein_coding protein_coding MGP_C3HHeJ_T0065854.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85548989 85695095 + MGP_C3HHeJ_P0065854 Adamtsl1 protein_coding protein_coding MGP_C3HHeJ_T0065855.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85549034 85734058 + Adamtsl1 protein_coding retained_intron MGP_C3HHeJ_T0065856.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85549072 85937026 + MGP_C3HHeJ_P0065856 Adamtsl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0065857.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85585698 85609234 + Adamtsl1 protein_coding retained_intron MGP_C3HHeJ_T0065858.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85694716 85748607 + MGP_C3HHeJ_P0065858 Adamtsl1 protein_coding protein_coding MGP_C3HHeJ_T0065859.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85777220 85777834 + Adamtsl1 protein_coding processed_transcript MGP_C3HHeJ_T0065860.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85777497 85939454 + Adamtsl1 protein_coding retained_intron MGP_C3HHeJ_T0067469.1 MGP_C3HHeJ_G0028479.1 mouse_genomes_project 4 126646113 126689011 + MGP_C3HHeJ_P0067469 Clspn protein_coding protein_coding MGP_C3HHeJ_T0067470.1 MGP_C3HHeJ_G0028479.1 mouse_genomes_project 4 126646173 126650316 + MGP_C3HHeJ_P0067470 Clspn protein_coding protein_coding MGP_C3HHeJ_T0067471.1 MGP_C3HHeJ_G0028479.1 mouse_genomes_project 4 126646183 126653854 + Clspn protein_coding processed_transcript MGP_C3HHeJ_T0067472.1 MGP_C3HHeJ_G0028479.1 mouse_genomes_project 4 126646292 126688640 + MGP_C3HHeJ_P0067472 Clspn protein_coding unknown_likely_coding MGP_C3HHeJ_T0067473.1 MGP_C3HHeJ_G0028479.1 mouse_genomes_project 4 126650307 126656290 + MGP_C3HHeJ_P0067473 Clspn protein_coding protein_coding MGP_C3HHeJ_T0067474.1 MGP_C3HHeJ_G0028479.1 mouse_genomes_project 4 126656571 126667763 + MGP_C3HHeJ_P0067474 Clspn protein_coding protein_coding MGP_C3HHeJ_T0067475.1 MGP_C3HHeJ_G0028479.1 mouse_genomes_project 4 126662429 126665263 + Clspn protein_coding processed_transcript MGP_C3HHeJ_T0067476.1 MGP_C3HHeJ_G0028479.1 mouse_genomes_project 4 126671333 126685544 + Clspn protein_coding processed_transcript MGP_C3HHeJ_T0014365.1 MGP_C3HHeJ_G0012469.1 mouse_genomes_project 4 44075735 44076063 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069555.1 MGP_C3HHeJ_G0028945.1 mouse_genomes_project 4 158367562 158370344 + MGP_C3HHeJ_P0069555 Tnfrsf4 protein_coding protein_coding MGP_C3HHeJ_T0069556.1 MGP_C3HHeJ_G0028945.1 mouse_genomes_project 4 158367575 158370331 + Tnfrsf4 protein_coding processed_transcript MGP_C3HHeJ_T0069557.1 MGP_C3HHeJ_G0028945.1 mouse_genomes_project 4 158367968 158368978 + Tnfrsf4 protein_coding processed_transcript MGP_C3HHeJ_T0011473.1 MGP_C3HHeJ_G0009606.1 mouse_genomes_project 4 53250633 53250921 + Gm24628 misc_RNA misc_RNA MGP_C3HHeJ_T0068129.1 MGP_C3HHeJ_G0028615.1 mouse_genomes_project 4 134832257 134833669 + MGP_C3HHeJ_P0068129 E130218I03Rik protein_coding protein_coding MGP_C3HHeJ_T0068130.1 MGP_C3HHeJ_G0028615.1 mouse_genomes_project 4 134832358 134834469 + MGP_C3HHeJ_P0068130 E130218I03Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068131.1 MGP_C3HHeJ_G0028615.1 mouse_genomes_project 4 134832358 134834465 + MGP_C3HHeJ_P0068131 E130218I03Rik protein_coding protein_coding MGP_C3HHeJ_T0068132.1 MGP_C3HHeJ_G0028615.1 mouse_genomes_project 4 134832371 134833585 + MGP_C3HHeJ_P0068132 E130218I03Rik protein_coding protein_coding MGP_C3HHeJ_T0068133.1 MGP_C3HHeJ_G0028615.1 mouse_genomes_project 4 134832371 134833908 + MGP_C3HHeJ_P0068133 E130218I03Rik protein_coding protein_coding MGP_C3HHeJ_T0068134.1 MGP_C3HHeJ_G0028615.1 mouse_genomes_project 4 134832372 134834148 + MGP_C3HHeJ_P0068134 E130218I03Rik protein_coding protein_coding MGP_C3HHeJ_T0068135.1 MGP_C3HHeJ_G0028615.1 mouse_genomes_project 4 134832373 134834115 + MGP_C3HHeJ_P0068135 E130218I03Rik protein_coding protein_coding MGP_C3HHeJ_T0068136.1 MGP_C3HHeJ_G0028615.1 mouse_genomes_project 4 134832578 134833873 + E130218I03Rik protein_coding processed_transcript MGP_C3HHeJ_T0068582.1 MGP_C3HHeJ_G0028724.1 mouse_genomes_project 4 141803685 141827167 + MGP_C3HHeJ_P0068582 Rcc2 protein_coding protein_coding MGP_C3HHeJ_T0068583.1 MGP_C3HHeJ_G0028724.1 mouse_genomes_project 4 141804617 141827167 + MGP_C3HHeJ_P0068583 Rcc2 protein_coding protein_coding MGP_C3HHeJ_T0068584.1 MGP_C3HHeJ_G0028724.1 mouse_genomes_project 4 141804617 141814500 + MGP_C3HHeJ_P0068584 Rcc2 protein_coding protein_coding MGP_C3HHeJ_T0068585.1 MGP_C3HHeJ_G0028724.1 mouse_genomes_project 4 141818380 141821251 + Rcc2 protein_coding processed_transcript MGP_C3HHeJ_T0068586.1 MGP_C3HHeJ_G0028724.1 mouse_genomes_project 4 141818407 141821159 + Rcc2 protein_coding processed_transcript MGP_C3HHeJ_T0101999.1 MGP_C3HHeJ_G0039964.1 mouse_genomes_project 4 95951783 95951961 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0068725.1 MGP_C3HHeJ_G0028759.1 mouse_genomes_project 4 143028009 143044732 - MGP_C3HHeJ_P0068725 Efhd2 protein_coding protein_coding MGP_C3HHeJ_T0064444.1 MGP_C3HHeJ_G0027780.1 mouse_genomes_project 4 16594734 16618414 + MGP_C3HHeJ_P0064444 Rmdn1 protein_coding protein_coding MGP_C3HHeJ_T0064445.1 MGP_C3HHeJ_G0027780.1 mouse_genomes_project 4 16594779 16626844 + MGP_C3HHeJ_P0064445 Rmdn1 protein_coding protein_coding MGP_C3HHeJ_T0014543.1 MGP_C3HHeJ_G0012647.1 mouse_genomes_project 4 112000421 112001471 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065949.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 90988485 91115016 - MGP_C3HHeJ_P0065949 Elavl2 protein_coding protein_coding MGP_C3HHeJ_T0065950.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 90988485 91115031 - MGP_C3HHeJ_P0065950 Elavl2 protein_coding protein_coding MGP_C3HHeJ_T0065951.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 90988485 91147657 - MGP_C3HHeJ_P0065951 Elavl2 protein_coding protein_coding MGP_C3HHeJ_T0065952.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 90988485 91114996 - MGP_C3HHeJ_P0065952 Elavl2 protein_coding protein_coding MGP_C3HHeJ_T0065953.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 90990802 90992305 - Elavl2 protein_coding retained_intron MGP_C3HHeJ_T0065954.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 90990962 91052383 - MGP_C3HHeJ_P0065954 Elavl2 protein_coding protein_coding MGP_C3HHeJ_T0065955.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 90990962 91050616 - MGP_C3HHeJ_P0065955 Elavl2 protein_coding protein_coding MGP_C3HHeJ_T0065956.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 90996388 91119266 - Elavl2 protein_coding retained_intron MGP_C3HHeJ_T0065957.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 91003190 91099619 - MGP_C3HHeJ_P0065957 Elavl2 protein_coding protein_coding MGP_C3HHeJ_T0065958.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 91047645 91115992 - MGP_C3HHeJ_P0065958 Elavl2 protein_coding protein_coding MGP_C3HHeJ_T0065959.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 91047739 91114918 - MGP_C3HHeJ_P0065959 Elavl2 protein_coding protein_coding MGP_C3HHeJ_T0065960.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 91123386 91147649 - Elavl2 protein_coding processed_transcript MGP_C3HHeJ_T0065961.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 91147567 91149124 - Elavl2 protein_coding processed_transcript MGP_C3HHeJ_T0014396.1 MGP_C3HHeJ_G0012500.1 mouse_genomes_project 4 53846011 53846254 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069081.1 MGP_C3HHeJ_G0028860.1 mouse_genomes_project 4 153052718 153072555 + MGP_C3HHeJ_P0069081 Tnfrsf9 protein_coding protein_coding MGP_C3HHeJ_T0069083.1 MGP_C3HHeJ_G0028860.1 mouse_genomes_project 4 153058331 153088869 + MGP_C3HHeJ_P0069083 Tnfrsf9 protein_coding protein_coding MGP_C3HHeJ_T0069084.1 MGP_C3HHeJ_G0028860.1 mouse_genomes_project 4 153058366 153088869 + MGP_C3HHeJ_P0069084 Tnfrsf9 protein_coding protein_coding MGP_C3HHeJ_T0069085.1 MGP_C3HHeJ_G0028860.1 mouse_genomes_project 4 153063473 153088016 + MGP_C3HHeJ_P0069085 Tnfrsf9 protein_coding protein_coding MGP_C3HHeJ_T0069086.1 MGP_C3HHeJ_G0028860.1 mouse_genomes_project 4 153066062 153072546 + MGP_C3HHeJ_P0069086 Tnfrsf9 protein_coding protein_coding MGP_C3HHeJ_T0069087.1 MGP_C3HHeJ_G0028860.1 mouse_genomes_project 4 153066143 153068092 + Tnfrsf9 protein_coding processed_transcript MGP_C3HHeJ_T0069088.1 MGP_C3HHeJ_G0028860.1 mouse_genomes_project 4 153066143 153088869 + MGP_C3HHeJ_P0069088 Tnfrsf9 protein_coding protein_coding MGP_C3HHeJ_T0069089.1 MGP_C3HHeJ_G0028860.1 mouse_genomes_project 4 153067819 153087861 + MGP_C3HHeJ_P0069089 Tnfrsf9 protein_coding protein_coding MGP_C3HHeJ_T0069090.1 MGP_C3HHeJ_G0028860.1 mouse_genomes_project 4 153067940 153073700 + MGP_C3HHeJ_P0069090 Tnfrsf9 protein_coding protein_coding MGP_C3HHeJ_T0067397.1 MGP_C3HHeJ_G0028465.1 mouse_genomes_project 4 126108980 126142818 + MGP_C3HHeJ_P0067397 Oscp1 protein_coding protein_coding MGP_C3HHeJ_T0067398.1 MGP_C3HHeJ_G0028465.1 mouse_genomes_project 4 126109096 126142826 + MGP_C3HHeJ_P0067398 Oscp1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067399.1 MGP_C3HHeJ_G0028465.1 mouse_genomes_project 4 126115373 126139095 + Oscp1 protein_coding processed_transcript MGP_C3HHeJ_T0067400.1 MGP_C3HHeJ_G0028465.1 mouse_genomes_project 4 126133753 126135252 + Oscp1 protein_coding processed_transcript MGP_C3HHeJ_T0067401.1 MGP_C3HHeJ_G0028465.1 mouse_genomes_project 4 126138332 126139313 + Oscp1 protein_coding processed_transcript MGP_C3HHeJ_T0007934.1 MGP_C3HHeJ_G0006470.1 mouse_genomes_project 4 143045520 143046914 + Gm29367 lincRNA lincRNA MGP_C3HHeJ_T0068358.1 MGP_C3HHeJ_G0028669.1 mouse_genomes_project 4 137427291 137626384 - MGP_C3HHeJ_P0068358 Ephb2 protein_coding protein_coding MGP_C3HHeJ_T0068359.1 MGP_C3HHeJ_G0028669.1 mouse_genomes_project 4 137433356 137626352 - MGP_C3HHeJ_P0068359 Ephb2 protein_coding protein_coding MGP_C3HHeJ_T0068360.1 MGP_C3HHeJ_G0028669.1 mouse_genomes_project 4 137434383 137626239 - MGP_C3HHeJ_P0068360 Ephb2 protein_coding protein_coding MGP_C3HHeJ_T0068361.1 MGP_C3HHeJ_G0028669.1 mouse_genomes_project 4 137439428 137441557 - Ephb2 protein_coding retained_intron MGP_C3HHeJ_T0068362.1 MGP_C3HHeJ_G0028669.1 mouse_genomes_project 4 137441367 137477347 - MGP_C3HHeJ_P0068362 Ephb2 protein_coding protein_coding MGP_C3HHeJ_T0068363.1 MGP_C3HHeJ_G0028669.1 mouse_genomes_project 4 137557989 137626370 - Ephb2 protein_coding retained_intron MGP_C3HHeJ_T0004438.1 MGP_C3HHeJ_G0003853.1 mouse_genomes_project 4 117255552 117263804 + Gm12996 antisense antisense MGP_C3HHeJ_T0067265.1 MGP_C3HHeJ_G0028431.1 mouse_genomes_project 4 123019161 123022621 + MGP_C3HHeJ_P0067265 protein_coding protein_coding MGP_C3HHeJ_T0014557.1 MGP_C3HHeJ_G0012661.1 mouse_genomes_project 4 117459769 117460409 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065751.1 MGP_C3HHeJ_G0028092.1 mouse_genomes_project 4 80270392 80315894 + MGP_C3HHeJ_P0065751 Lurap1l protein_coding protein_coding MGP_C3HHeJ_T0069202.1 MGP_C3HHeJ_G0028882.1 mouse_genomes_project 4 154521665 154529942 + Rpl22 protein_coding processed_transcript MGP_C3HHeJ_T0069203.1 MGP_C3HHeJ_G0028882.1 mouse_genomes_project 4 154521776 154529946 + MGP_C3HHeJ_P0069203 Rpl22 protein_coding protein_coding MGP_C3HHeJ_T0069204.1 MGP_C3HHeJ_G0028882.1 mouse_genomes_project 4 154521790 154531537 + MGP_C3HHeJ_P0069204 Rpl22 protein_coding protein_coding MGP_C3HHeJ_T0069205.1 MGP_C3HHeJ_G0028882.1 mouse_genomes_project 4 154521792 154531536 + MGP_C3HHeJ_P0069205 Rpl22 protein_coding protein_coding MGP_C3HHeJ_T0069206.1 MGP_C3HHeJ_G0028882.1 mouse_genomes_project 4 154522990 154527512 + Rpl22 protein_coding processed_transcript MGP_C3HHeJ_T0069207.1 MGP_C3HHeJ_G0028882.1 mouse_genomes_project 4 154523049 154527741 + Rpl22 protein_coding processed_transcript MGP_C3HHeJ_T0069208.1 MGP_C3HHeJ_G0028882.1 mouse_genomes_project 4 154523391 154529939 + Rpl22 protein_coding processed_transcript MGP_C3HHeJ_T0069209.1 MGP_C3HHeJ_G0028882.1 mouse_genomes_project 4 154523468 154529940 + Rpl22 protein_coding processed_transcript MGP_C3HHeJ_T0100666.1 MGP_C3HHeJ_G0038860.1 mouse_genomes_project 4 123205741 123205872 + Gm25788 snoRNA snoRNA MGP_C3HHeJ_T0098471.1 MGP_C3HHeJ_G0036676.1 mouse_genomes_project 4 81939068 81941860 - Gm11267 sense_intronic sense_intronic MGP_C3HHeJ_T0064325.1 MGP_C3HHeJ_G0027748.1 mouse_genomes_project 4 7956223 7958954 + Ccne2 protein_coding processed_transcript MGP_C3HHeJ_T0064326.1 MGP_C3HHeJ_G0027748.1 mouse_genomes_project 4 7956226 7970021 + MGP_C3HHeJ_P0064326 Ccne2 protein_coding protein_coding MGP_C3HHeJ_T0064327.1 MGP_C3HHeJ_G0027748.1 mouse_genomes_project 4 7956581 7960147 + Ccne2 protein_coding processed_transcript MGP_C3HHeJ_T0064328.1 MGP_C3HHeJ_G0027748.1 mouse_genomes_project 4 7956598 7970125 + MGP_C3HHeJ_P0064328 Ccne2 protein_coding protein_coding MGP_C3HHeJ_T0064329.1 MGP_C3HHeJ_G0027748.1 mouse_genomes_project 4 7956602 7970028 + MGP_C3HHeJ_P0064329 Ccne2 protein_coding protein_coding MGP_C3HHeJ_T0064330.1 MGP_C3HHeJ_G0027748.1 mouse_genomes_project 4 7956608 7960029 + Ccne2 protein_coding processed_transcript MGP_C3HHeJ_T0064331.1 MGP_C3HHeJ_G0027748.1 mouse_genomes_project 4 7957468 7958228 + Ccne2 protein_coding processed_transcript MGP_C3HHeJ_T0014360.1 MGP_C3HHeJ_G0012464.1 mouse_genomes_project 4 41994810 41996170 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100660.1 MGP_C3HHeJ_G0038854.1 mouse_genomes_project 4 117611640 117611744 - Gm26330 snoRNA snoRNA MGP_C3HHeJ_T0007765.1 MGP_C3HHeJ_G0006343.1 mouse_genomes_project 4 53203054 53233422 + Gm12478 lincRNA lincRNA MGP_C3HHeJ_T0017864.1 MGP_C3HHeJ_G0015336.1 mouse_genomes_project 4 124946969 124948560 + 9930104L06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017865.1 MGP_C3HHeJ_G0015336.1 mouse_genomes_project 4 124946979 124949376 + 9930104L06Rik processed_transcript retained_intron MGP_C3HHeJ_T0017866.1 MGP_C3HHeJ_G0015336.1 mouse_genomes_project 4 124946983 124953563 + 9930104L06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017867.1 MGP_C3HHeJ_G0015336.1 mouse_genomes_project 4 124946986 124955608 + 9930104L06Rik processed_transcript retained_intron MGP_C3HHeJ_T0017868.1 MGP_C3HHeJ_G0015336.1 mouse_genomes_project 4 124946995 124955609 + 9930104L06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017869.1 MGP_C3HHeJ_G0015336.1 mouse_genomes_project 4 124948699 124953712 + 9930104L06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017870.1 MGP_C3HHeJ_G0015336.1 mouse_genomes_project 4 124954083 124954817 + 9930104L06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0068852.1 MGP_C3HHeJ_G0028817.1 mouse_genomes_project 4 149969680 149988904 + MGP_C3HHeJ_P0068852 Mthfr protein_coding protein_coding MGP_C3HHeJ_T0068853.1 MGP_C3HHeJ_G0028817.1 mouse_genomes_project 4 149969762 149977306 + MGP_C3HHeJ_P0068853 Mthfr protein_coding protein_coding MGP_C3HHeJ_T0068854.1 MGP_C3HHeJ_G0028817.1 mouse_genomes_project 4 149971409 149974866 + Mthfr protein_coding retained_intron MGP_C3HHeJ_T0068855.1 MGP_C3HHeJ_G0028817.1 mouse_genomes_project 4 149971793 149992249 + MGP_C3HHeJ_P0068855 Mthfr protein_coding protein_coding MGP_C3HHeJ_T0068856.1 MGP_C3HHeJ_G0028817.1 mouse_genomes_project 4 149971889 149992249 + MGP_C3HHeJ_P0068856 Mthfr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068857.1 MGP_C3HHeJ_G0028817.1 mouse_genomes_project 4 149972204 149975374 + Mthfr protein_coding retained_intron MGP_C3HHeJ_T0068858.1 MGP_C3HHeJ_G0028817.1 mouse_genomes_project 4 149985416 149992246 + MGP_C3HHeJ_P0068858 Mthfr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065381.1 MGP_C3HHeJ_G0027991.1 mouse_genomes_project 4 51020753 51021178 - MGP_C3HHeJ_P0065381 Vma21-ps protein_coding protein_coding MGP_C3HHeJ_T0064495.1 MGP_C3HHeJ_G0027794.1 mouse_genomes_project 4 18991842 19060661 + Faxc protein_coding processed_transcript MGP_C3HHeJ_T0064496.1 MGP_C3HHeJ_G0027794.1 mouse_genomes_project 4 18991844 19061266 + MGP_C3HHeJ_P0064496 Faxc protein_coding protein_coding MGP_C3HHeJ_T0064497.1 MGP_C3HHeJ_G0027794.1 mouse_genomes_project 4 18991846 19012653 + Faxc protein_coding processed_transcript MGP_C3HHeJ_T0064498.1 MGP_C3HHeJ_G0027794.1 mouse_genomes_project 4 18991870 19063354 + Faxc protein_coding processed_transcript MGP_C3HHeJ_T0064499.1 MGP_C3HHeJ_G0027794.1 mouse_genomes_project 4 19020122 19022474 + Faxc protein_coding processed_transcript MGP_C3HHeJ_T0065486.1 MGP_C3HHeJ_G0028022.1 mouse_genomes_project 4 56615377 56628382 - MGP_C3HHeJ_P0065486 Txn1 protein_coding protein_coding MGP_C3HHeJ_T0010570.1 MGP_C3HHeJ_G0008703.1 mouse_genomes_project 4 158125195 158125321 + Gm27743 miRNA miRNA MGP_C3HHeJ_T0068292.1 MGP_C3HHeJ_G0028654.1 mouse_genomes_project 4 136703379 136715894 - MGP_C3HHeJ_P0068292 Pithd1 protein_coding protein_coding MGP_C3HHeJ_T0068293.1 MGP_C3HHeJ_G0028654.1 mouse_genomes_project 4 136703985 136714566 - Pithd1 protein_coding processed_transcript MGP_C3HHeJ_T0068294.1 MGP_C3HHeJ_G0028654.1 mouse_genomes_project 4 136704313 136707250 - Pithd1 protein_coding retained_intron MGP_C3HHeJ_T0068295.1 MGP_C3HHeJ_G0028654.1 mouse_genomes_project 4 136704315 136714952 - MGP_C3HHeJ_P0068295 Pithd1 protein_coding protein_coding MGP_C3HHeJ_T0068296.1 MGP_C3HHeJ_G0028654.1 mouse_genomes_project 4 136705126 136715547 - MGP_C3HHeJ_P0068296 Pithd1 protein_coding protein_coding MGP_C3HHeJ_T0068297.1 MGP_C3HHeJ_G0028654.1 mouse_genomes_project 4 136706677 136715711 - Pithd1 protein_coding retained_intron MGP_C3HHeJ_T0068298.1 MGP_C3HHeJ_G0028654.1 mouse_genomes_project 4 136715043 136715717 - Pithd1 protein_coding processed_transcript MGP_C3HHeJ_T0065416.1 MGP_C3HHeJ_G0028004.1 mouse_genomes_project 4 52380407 52421205 + MGP_C3HHeJ_P0065416 Tmem38b protein_coding protein_coding MGP_C3HHeJ_T0065417.1 MGP_C3HHeJ_G0028004.1 mouse_genomes_project 4 52380417 52387005 + Tmem38b protein_coding processed_transcript MGP_C3HHeJ_T0065418.1 MGP_C3HHeJ_G0028004.1 mouse_genomes_project 4 52380419 52402659 + Tmem38b protein_coding processed_transcript MGP_C3HHeJ_T0065419.1 MGP_C3HHeJ_G0028004.1 mouse_genomes_project 4 52395284 52413602 + MGP_C3HHeJ_P0065419 Tmem38b protein_coding protein_coding MGP_C3HHeJ_T0066957.1 MGP_C3HHeJ_G0028348.1 mouse_genomes_project 4 118174970 118182547 - Dmap1 protein_coding processed_transcript MGP_C3HHeJ_T0066958.1 MGP_C3HHeJ_G0028348.1 mouse_genomes_project 4 118174970 118182567 - MGP_C3HHeJ_P0066958 Dmap1 protein_coding protein_coding MGP_C3HHeJ_T0066959.1 MGP_C3HHeJ_G0028348.1 mouse_genomes_project 4 118174975 118182277 - Dmap1 protein_coding processed_transcript MGP_C3HHeJ_T0066960.1 MGP_C3HHeJ_G0028348.1 mouse_genomes_project 4 118181213 118182515 - Dmap1 protein_coding processed_transcript MGP_C3HHeJ_T0066961.1 MGP_C3HHeJ_G0028348.1 mouse_genomes_project 4 118181595 118182505 - Dmap1 protein_coding processed_transcript MGP_C3HHeJ_T0066962.1 MGP_C3HHeJ_G0028348.1 mouse_genomes_project 4 118181880 118182565 - Dmap1 protein_coding processed_transcript MGP_C3HHeJ_T0098476.1 MGP_C3HHeJ_G0036681.1 mouse_genomes_project 4 131087838 131091630 + Gm12971 sense_intronic sense_intronic MGP_C3HHeJ_T0014401.1 MGP_C3HHeJ_G0012505.1 mouse_genomes_project 4 55004875 55005654 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067568.1 MGP_C3HHeJ_G0028503.1 mouse_genomes_project 4 128967291 129001180 - MGP_C3HHeJ_P0067568 Zfp362 protein_coding protein_coding MGP_C3HHeJ_T0067569.1 MGP_C3HHeJ_G0028503.1 mouse_genomes_project 4 128967307 128990021 - MGP_C3HHeJ_P0067569 Zfp362 protein_coding protein_coding MGP_C3HHeJ_T0067570.1 MGP_C3HHeJ_G0028503.1 mouse_genomes_project 4 128971287 129001180 - MGP_C3HHeJ_P0067570 Zfp362 protein_coding protein_coding MGP_C3HHeJ_T0067571.1 MGP_C3HHeJ_G0028503.1 mouse_genomes_project 4 128983529 128984301 - Zfp362 protein_coding processed_transcript MGP_C3HHeJ_T0067519.1 MGP_C3HHeJ_G0028488.1 mouse_genomes_project 4 127204473 127256291 + MGP_C3HHeJ_P0067519 Zmym6 protein_coding protein_coding MGP_C3HHeJ_T0067520.1 MGP_C3HHeJ_G0028488.1 mouse_genomes_project 4 127204487 127256293 + MGP_C3HHeJ_P0067520 Zmym6 protein_coding protein_coding MGP_C3HHeJ_T0067521.1 MGP_C3HHeJ_G0028488.1 mouse_genomes_project 4 127204532 127239013 + Zmym6 protein_coding processed_transcript MGP_C3HHeJ_T0067522.1 MGP_C3HHeJ_G0028488.1 mouse_genomes_project 4 127205381 127217632 + Zmym6 protein_coding processed_transcript MGP_C3HHeJ_T0067523.1 MGP_C3HHeJ_G0028488.1 mouse_genomes_project 4 127214852 127217775 + Zmym6 protein_coding processed_transcript MGP_C3HHeJ_T0067524.1 MGP_C3HHeJ_G0028488.1 mouse_genomes_project 4 127235347 127238891 + Zmym6 protein_coding processed_transcript MGP_C3HHeJ_T0068891.1 MGP_C3HHeJ_G0028825.1 mouse_genomes_project 4 150399737 150410882 - MGP_C3HHeJ_P0068891 Ubiad1 protein_coding protein_coding MGP_C3HHeJ_T0068892.1 MGP_C3HHeJ_G0028825.1 mouse_genomes_project 4 150401732 150410872 - Ubiad1 protein_coding processed_transcript MGP_C3HHeJ_T0010525.1 MGP_C3HHeJ_G0008658.1 mouse_genomes_project 4 108219316 108219409 + Mir6397 miRNA miRNA MGP_C3HHeJ_T0067479.1 MGP_C3HHeJ_G0028481.1 mouse_genomes_project 4 126786220 126818765 + MGP_C3HHeJ_P0067479 Psmb2 protein_coding protein_coding MGP_C3HHeJ_T0067480.1 MGP_C3HHeJ_G0028481.1 mouse_genomes_project 4 126786269 126795869 + Psmb2 protein_coding processed_transcript MGP_C3HHeJ_T0067481.1 MGP_C3HHeJ_G0028481.1 mouse_genomes_project 4 126786294 126816814 + Psmb2 protein_coding processed_transcript MGP_C3HHeJ_T0014500.1 MGP_C3HHeJ_G0012604.1 mouse_genomes_project 4 98991460 98992179 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017885.1 MGP_C3HHeJ_G0015343.1 mouse_genomes_project 4 154552983 154554397 - Gm13645 processed_transcript processed_transcript MGP_C3HHeJ_T0067796.1 MGP_C3HHeJ_G0028546.1 mouse_genomes_project 4 130627728 130673027 - MGP_C3HHeJ_P0067796 Zcchc17 protein_coding protein_coding MGP_C3HHeJ_T0067797.1 MGP_C3HHeJ_G0028546.1 mouse_genomes_project 4 130628624 130631085 - Zcchc17 protein_coding processed_transcript MGP_C3HHeJ_T0067798.1 MGP_C3HHeJ_G0028546.1 mouse_genomes_project 4 130629040 130657939 - Zcchc17 protein_coding processed_transcript MGP_C3HHeJ_T0067799.1 MGP_C3HHeJ_G0028546.1 mouse_genomes_project 4 130648935 130650654 - Zcchc17 protein_coding processed_transcript MGP_C3HHeJ_T0067800.1 MGP_C3HHeJ_G0028546.1 mouse_genomes_project 4 130665247 130673000 - Zcchc17 protein_coding retained_intron MGP_C3HHeJ_T0069545.1 MGP_C3HHeJ_G0028942.1 mouse_genomes_project 4 158311232 158315515 + MGP_C3HHeJ_P0069545 Fam132a protein_coding protein_coding MGP_C3HHeJ_T0069546.1 MGP_C3HHeJ_G0028942.1 mouse_genomes_project 4 158313458 158314080 + Fam132a protein_coding processed_transcript MGP_C3HHeJ_T0069547.1 MGP_C3HHeJ_G0028942.1 mouse_genomes_project 4 158313994 158315507 + Fam132a protein_coding processed_transcript MGP_C3HHeJ_T0100641.1 MGP_C3HHeJ_G0038835.1 mouse_genomes_project 4 72699322 72699455 - Gm24170 snoRNA snoRNA MGP_C3HHeJ_T0004531.1 MGP_C3HHeJ_G0003926.1 mouse_genomes_project 4 154613290 154613753 + Gm16333 antisense antisense MGP_C3HHeJ_T0007772.1 MGP_C3HHeJ_G0006349.1 mouse_genomes_project 4 54828705 54832568 - 2310081O03Rik lincRNA lincRNA MGP_C3HHeJ_T0066181.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102040772 102595168 + MGP_C3HHeJ_P0066181 Pde4b protein_coding protein_coding MGP_C3HHeJ_T0066182.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102040954 102159506 + Pde4b protein_coding retained_intron MGP_C3HHeJ_T0066183.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102040970 102546952 + MGP_C3HHeJ_P0066183 Pde4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066184.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102220986 102545279 + MGP_C3HHeJ_P0066184 Pde4b protein_coding protein_coding MGP_C3HHeJ_T0066185.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102221246 102596594 + MGP_C3HHeJ_P0066185 Pde4b protein_coding protein_coding MGP_C3HHeJ_T0066186.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102221473 102495244 + MGP_C3HHeJ_P0066186 Pde4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066187.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102400229 102594871 + MGP_C3HHeJ_P0066187 Pde4b protein_coding protein_coding MGP_C3HHeJ_T0066188.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102408785 102531854 + MGP_C3HHeJ_P0066188 Pde4b protein_coding protein_coding MGP_C3HHeJ_T0066189.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102451382 102471273 + Pde4b protein_coding retained_intron MGP_C3HHeJ_T0066190.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102559423 102595182 + MGP_C3HHeJ_P0066190 Pde4b protein_coding protein_coding MGP_C3HHeJ_T0066191.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102576896 102595038 + MGP_C3HHeJ_P0066191 Pde4b protein_coding protein_coding MGP_C3HHeJ_T0066192.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102579065 102595196 + MGP_C3HHeJ_P0066192 Pde4b protein_coding protein_coding MGP_C3HHeJ_T0066193.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102579185 102592784 + MGP_C3HHeJ_P0066193 Pde4b protein_coding protein_coding MGP_C3HHeJ_T0065579.1 MGP_C3HHeJ_G0028048.1 mouse_genomes_project 4 61265577 61299943 + MGP_C3HHeJ_P0065579 Slc31a1 protein_coding protein_coding MGP_C3HHeJ_T0065581.1 MGP_C3HHeJ_G0028048.1 mouse_genomes_project 4 61292129 61299943 + MGP_C3HHeJ_P0065581 Slc31a1 protein_coding protein_coding MGP_C3HHeJ_T0004390.1 MGP_C3HHeJ_G0003821.1 mouse_genomes_project 4 62310030 62323254 + Aknaos antisense antisense MGP_C3HHeJ_T0014580.1 MGP_C3HHeJ_G0012684.1 mouse_genomes_project 4 121972686 121973011 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066759.1 MGP_C3HHeJ_G0028312.1 mouse_genomes_project 4 116451201 116459267 - Uqcrh protein_coding processed_transcript MGP_C3HHeJ_T0066760.1 MGP_C3HHeJ_G0028312.1 mouse_genomes_project 4 116451201 116459304 - MGP_C3HHeJ_P0066760 Uqcrh protein_coding protein_coding MGP_C3HHeJ_T0066761.1 MGP_C3HHeJ_G0028312.1 mouse_genomes_project 4 116451201 116459264 - MGP_C3HHeJ_P0066761 Uqcrh protein_coding protein_coding MGP_C3HHeJ_T0066762.1 MGP_C3HHeJ_G0028312.1 mouse_genomes_project 4 116451202 116454315 - Uqcrh protein_coding retained_intron MGP_C3HHeJ_T0066763.1 MGP_C3HHeJ_G0028312.1 mouse_genomes_project 4 116454337 116459292 - Uqcrh protein_coding retained_intron MGP_C3HHeJ_T0064865.1 MGP_C3HHeJ_G0027885.1 mouse_genomes_project 4 40682203 40682810 - MGP_C3HHeJ_P0064865 Gm10931 protein_coding protein_coding MGP_C3HHeJ_T0064822.1 MGP_C3HHeJ_G0027874.1 mouse_genomes_project 4 39707572 39708606 - MGP_C3HHeJ_P0064822 protein_coding protein_coding MGP_C3HHeJ_T0068527.1 MGP_C3HHeJ_G0028711.1 mouse_genomes_project 4 140285572 140302256 - MGP_C3HHeJ_P0068527 Pqlc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068528.1 MGP_C3HHeJ_G0028711.1 mouse_genomes_project 4 140290108 140302279 - MGP_C3HHeJ_P0068528 Pqlc2 protein_coding protein_coding MGP_C3HHeJ_T0068529.1 MGP_C3HHeJ_G0028711.1 mouse_genomes_project 4 140290110 140302236 - MGP_C3HHeJ_P0068529 Pqlc2 protein_coding protein_coding MGP_C3HHeJ_T0068530.1 MGP_C3HHeJ_G0028711.1 mouse_genomes_project 4 140290110 140302249 - MGP_C3HHeJ_P0068530 Pqlc2 protein_coding protein_coding MGP_C3HHeJ_T0068531.1 MGP_C3HHeJ_G0028711.1 mouse_genomes_project 4 140292904 140302208 - MGP_C3HHeJ_P0068531 Pqlc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100655.1 MGP_C3HHeJ_G0038849.1 mouse_genomes_project 4 106177102 106177217 - Gm26047 snoRNA snoRNA MGP_C3HHeJ_T0065313.1 MGP_C3HHeJ_G0027971.1 mouse_genomes_project 4 46515233 46576113 + MGP_C3HHeJ_P0065313 Stx17 protein_coding protein_coding MGP_C3HHeJ_T0065314.1 MGP_C3HHeJ_G0027971.1 mouse_genomes_project 4 46515241 46552215 + MGP_C3HHeJ_P0065314 Stx17 protein_coding protein_coding MGP_C3HHeJ_T0065315.1 MGP_C3HHeJ_G0027971.1 mouse_genomes_project 4 46515244 46576709 + MGP_C3HHeJ_P0065315 Stx17 protein_coding protein_coding MGP_C3HHeJ_T0065316.1 MGP_C3HHeJ_G0027971.1 mouse_genomes_project 4 46515253 46572433 + MGP_C3HHeJ_P0065316 Stx17 protein_coding protein_coding MGP_C3HHeJ_T0068603.1 MGP_C3HHeJ_G0028731.1 mouse_genomes_project 4 142101152 142120465 + MGP_C3HHeJ_P0068603 Atp13a2 protein_coding protein_coding MGP_C3HHeJ_T0068604.1 MGP_C3HHeJ_G0028731.1 mouse_genomes_project 4 142101179 142122708 + Atp13a2 protein_coding retained_intron MGP_C3HHeJ_T0068605.1 MGP_C3HHeJ_G0028731.1 mouse_genomes_project 4 142101269 142112447 + Atp13a2 protein_coding retained_intron MGP_C3HHeJ_T0068606.1 MGP_C3HHeJ_G0028731.1 mouse_genomes_project 4 142101346 142122714 + MGP_C3HHeJ_P0068606 Atp13a2 protein_coding protein_coding MGP_C3HHeJ_T0068607.1 MGP_C3HHeJ_G0028731.1 mouse_genomes_project 4 142109881 142117312 + Atp13a2 protein_coding processed_transcript MGP_C3HHeJ_T0068608.1 MGP_C3HHeJ_G0028731.1 mouse_genomes_project 4 142110491 142116251 + Atp13a2 protein_coding processed_transcript MGP_C3HHeJ_T0068609.1 MGP_C3HHeJ_G0028731.1 mouse_genomes_project 4 142116088 142117468 + Atp13a2 protein_coding processed_transcript MGP_C3HHeJ_T0068610.1 MGP_C3HHeJ_G0028731.1 mouse_genomes_project 4 142119794 142122101 + Atp13a2 protein_coding retained_intron MGP_C3HHeJ_T0064550.1 MGP_C3HHeJ_G0027807.1 mouse_genomes_project 4 29388343 29447036 + MGP_C3HHeJ_P0064550 Map3k7 protein_coding protein_coding MGP_C3HHeJ_T0064551.1 MGP_C3HHeJ_G0027807.1 mouse_genomes_project 4 29388486 29442749 + MGP_C3HHeJ_P0064551 Map3k7 protein_coding protein_coding MGP_C3HHeJ_T0064552.1 MGP_C3HHeJ_G0027807.1 mouse_genomes_project 4 29401640 29411720 + Map3k7 protein_coding processed_transcript MGP_C3HHeJ_T0064553.1 MGP_C3HHeJ_G0027807.1 mouse_genomes_project 4 29403898 29408661 + Map3k7 protein_coding processed_transcript MGP_C3HHeJ_T0064554.1 MGP_C3HHeJ_G0027807.1 mouse_genomes_project 4 29405969 29415738 + Map3k7 protein_coding processed_transcript MGP_C3HHeJ_T0064555.1 MGP_C3HHeJ_G0027807.1 mouse_genomes_project 4 29408606 29439076 + Map3k7 protein_coding processed_transcript MGP_C3HHeJ_T0064556.1 MGP_C3HHeJ_G0027807.1 mouse_genomes_project 4 29415435 29442628 + Map3k7 protein_coding processed_transcript MGP_C3HHeJ_T0004361.1 MGP_C3HHeJ_G0003795.1 mouse_genomes_project 4 32545731 32550477 + Gm12364 antisense antisense MGP_C3HHeJ_T0014378.1 MGP_C3HHeJ_G0012482.1 mouse_genomes_project 4 50392830 50394069 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017829.1 MGP_C3HHeJ_G0015311.1 mouse_genomes_project 4 62928738 63104778 + 8030451A03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017830.1 MGP_C3HHeJ_G0015311.1 mouse_genomes_project 4 62928827 62998704 + 8030451A03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017831.1 MGP_C3HHeJ_G0015311.1 mouse_genomes_project 4 62928844 62932239 + 8030451A03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017832.1 MGP_C3HHeJ_G0015311.1 mouse_genomes_project 4 63103406 63103799 + 8030451A03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0014555.1 MGP_C3HHeJ_G0012659.1 mouse_genomes_project 4 117315804 117316680 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067726.1 MGP_C3HHeJ_G0028532.1 mouse_genomes_project 4 129897534 129938590 - MGP_C3HHeJ_P0067726 Kpna6 protein_coding protein_coding MGP_C3HHeJ_T0067727.1 MGP_C3HHeJ_G0028532.1 mouse_genomes_project 4 129907225 129908506 - Kpna6 protein_coding retained_intron MGP_C3HHeJ_T0067728.1 MGP_C3HHeJ_G0028532.1 mouse_genomes_project 4 129907873 129910315 - Kpna6 protein_coding retained_intron MGP_C3HHeJ_T0067729.1 MGP_C3HHeJ_G0028532.1 mouse_genomes_project 4 129911035 129938438 - MGP_C3HHeJ_P0067729 Kpna6 protein_coding protein_coding MGP_C3HHeJ_T0067730.1 MGP_C3HHeJ_G0028532.1 mouse_genomes_project 4 129914576 129938677 - Kpna6 protein_coding retained_intron MGP_C3HHeJ_T0014237.1 MGP_C3HHeJ_G0012341.1 mouse_genomes_project 4 5635170 5635568 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014333.1 MGP_C3HHeJ_G0012437.1 mouse_genomes_project 4 31925864 31926827 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014545.1 MGP_C3HHeJ_G0012649.1 mouse_genomes_project 4 115504056 115507589 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011478.1 MGP_C3HHeJ_G0009611.1 mouse_genomes_project 4 94180006 94180268 - Gm26410 misc_RNA misc_RNA MGP_C3HHeJ_T0067109.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119762605 119778502 + MGP_C3HHeJ_P0067109 P3h1 protein_coding protein_coding MGP_C3HHeJ_T0067110.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119762629 119778505 + MGP_C3HHeJ_P0067110 P3h1 protein_coding protein_coding MGP_C3HHeJ_T0067111.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119762636 119777897 + P3h1 protein_coding processed_transcript MGP_C3HHeJ_T0067112.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119762636 119778502 + MGP_C3HHeJ_P0067112 P3h1 protein_coding protein_coding MGP_C3HHeJ_T0067113.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119762644 119777899 + MGP_C3HHeJ_P0067113 P3h1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067114.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119762680 119777905 + MGP_C3HHeJ_P0067114 P3h1 protein_coding protein_coding MGP_C3HHeJ_T0067115.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119763490 119766598 + P3h1 protein_coding processed_transcript MGP_C3HHeJ_T0067116.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119765034 119771020 + P3h1 protein_coding processed_transcript MGP_C3HHeJ_T0067117.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119767607 119773674 + P3h1 protein_coding processed_transcript MGP_C3HHeJ_T0067118.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119774552 119777663 + P3h1 protein_coding processed_transcript MGP_C3HHeJ_T0067119.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119776168 119777902 + P3h1 protein_coding processed_transcript MGP_C3HHeJ_T0067120.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119776391 119777584 + P3h1 protein_coding retained_intron MGP_C3HHeJ_T0065666.1 MGP_C3HHeJ_G0028068.1 mouse_genomes_project 4 62598773 62599794 - Gm11214 protein_coding translated_processed_pseudogene MGP_C3HHeJ_T0065667.1 MGP_C3HHeJ_G0028068.1 mouse_genomes_project 4 62598773 62599325 - MGP_C3HHeJ_P0065667 Gm11214 protein_coding protein_coding MGP_C3HHeJ_T0014243.1 MGP_C3HHeJ_G0012347.1 mouse_genomes_project 4 7695322 7695808 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065937.1 MGP_C3HHeJ_G0028130.1 mouse_genomes_project 4 88487278 88487839 + MGP_C3HHeJ_P0065937 Ifna4 protein_coding protein_coding MGP_C3HHeJ_T0064779.1 MGP_C3HHeJ_G0027862.1 mouse_genomes_project 4 39494795 39549964 - MGP_C3HHeJ_P0064779 Fam219a protein_coding protein_coding MGP_C3HHeJ_T0064780.1 MGP_C3HHeJ_G0027862.1 mouse_genomes_project 4 39494795 39549936 - MGP_C3HHeJ_P0064780 Fam219a protein_coding protein_coding MGP_C3HHeJ_T0064781.1 MGP_C3HHeJ_G0027862.1 mouse_genomes_project 4 39494795 39549964 - MGP_C3HHeJ_P0064781 Fam219a protein_coding protein_coding MGP_C3HHeJ_T0064782.1 MGP_C3HHeJ_G0027862.1 mouse_genomes_project 4 39497595 39549663 - MGP_C3HHeJ_P0064782 Fam219a protein_coding unknown_likely_coding MGP_C3HHeJ_T0064783.1 MGP_C3HHeJ_G0027862.1 mouse_genomes_project 4 39497675 39502123 - Fam219a protein_coding processed_transcript MGP_C3HHeJ_T0064784.1 MGP_C3HHeJ_G0027862.1 mouse_genomes_project 4 39501468 39549965 - Fam219a protein_coding processed_transcript MGP_C3HHeJ_T0007721.1 MGP_C3HHeJ_G0006304.1 mouse_genomes_project 4 9143427 9186103 + Gm11846 lincRNA lincRNA MGP_C3HHeJ_T0068379.1 MGP_C3HHeJ_G0028680.1 mouse_genomes_project 4 138333044 138442425 + MGP_C3HHeJ_P0068379 Hspg2 protein_coding protein_coding MGP_C3HHeJ_T0068380.1 MGP_C3HHeJ_G0028680.1 mouse_genomes_project 4 138333078 138442424 + MGP_C3HHeJ_P0068380 Hspg2 protein_coding protein_coding MGP_C3HHeJ_T0068381.1 MGP_C3HHeJ_G0028680.1 mouse_genomes_project 4 138440948 138441902 + Hspg2 protein_coding processed_transcript MGP_C3HHeJ_T0010566.1 MGP_C3HHeJ_G0008699.1 mouse_genomes_project 4 151575837 151575897 + Mir5616 miRNA miRNA MGP_C3HHeJ_T0017835.1 MGP_C3HHeJ_G0015314.1 mouse_genomes_project 4 84980295 85264087 + processed_transcript processed_transcript MGP_C3HHeJ_T0069245.1 MGP_C3HHeJ_G0028888.1 mouse_genomes_project 4 156234641 156242078 - MGP_C3HHeJ_P0069245 Dffb protein_coding unknown_likely_coding MGP_C3HHeJ_T0069246.1 MGP_C3HHeJ_G0028888.1 mouse_genomes_project 4 156234649 156245156 - MGP_C3HHeJ_P0069246 Dffb protein_coding protein_coding MGP_C3HHeJ_T0069247.1 MGP_C3HHeJ_G0028888.1 mouse_genomes_project 4 156239273 156245081 - Dffb protein_coding processed_transcript MGP_C3HHeJ_T0069248.1 MGP_C3HHeJ_G0028888.1 mouse_genomes_project 4 156242629 156245087 - Dffb protein_coding retained_intron MGP_C3HHeJ_T0069249.1 MGP_C3HHeJ_G0028888.1 mouse_genomes_project 4 156242777 156245019 - MGP_C3HHeJ_P0069249 Dffb protein_coding unknown_likely_coding MGP_C3HHeJ_T0069250.1 MGP_C3HHeJ_G0028888.1 mouse_genomes_project 4 156244532 156245111 - Dffb protein_coding retained_intron MGP_C3HHeJ_T0064278.1 MGP_C3HHeJ_G0027741.1 mouse_genomes_project 4 5996881 6009849 + Clvs1 protein_coding processed_transcript MGP_C3HHeJ_T0064279.1 MGP_C3HHeJ_G0027741.1 mouse_genomes_project 4 5996905 6080232 + Clvs1 protein_coding processed_transcript MGP_C3HHeJ_T0064280.1 MGP_C3HHeJ_G0027741.1 mouse_genomes_project 4 5996905 6186247 + MGP_C3HHeJ_P0064280 Clvs1 protein_coding protein_coding MGP_C3HHeJ_T0064281.1 MGP_C3HHeJ_G0027741.1 mouse_genomes_project 4 5996918 6009847 + Clvs1 protein_coding processed_transcript MGP_C3HHeJ_T0064282.1 MGP_C3HHeJ_G0027741.1 mouse_genomes_project 4 5996935 6009009 + Clvs1 protein_coding processed_transcript MGP_C3HHeJ_T0064283.1 MGP_C3HHeJ_G0027741.1 mouse_genomes_project 4 5999039 6186247 + MGP_C3HHeJ_P0064283 Clvs1 protein_coding protein_coding MGP_C3HHeJ_T0064284.1 MGP_C3HHeJ_G0027741.1 mouse_genomes_project 4 6038344 6165837 + Clvs1 protein_coding processed_transcript MGP_C3HHeJ_T0064285.1 MGP_C3HHeJ_G0027741.1 mouse_genomes_project 4 6062181 6165874 + Clvs1 protein_coding processed_transcript MGP_C3HHeJ_T0066844.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127046 117134352 + MGP_C3HHeJ_P0066844 Ccdc163 protein_coding protein_coding MGP_C3HHeJ_T0066845.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127108 117134356 + MGP_C3HHeJ_P0066845 Ccdc163 protein_coding protein_coding MGP_C3HHeJ_T0066846.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127133 117128707 + MGP_C3HHeJ_P0066846 Ccdc163 protein_coding protein_coding MGP_C3HHeJ_T0066847.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127135 117128368 + MGP_C3HHeJ_P0066847 Ccdc163 protein_coding protein_coding MGP_C3HHeJ_T0066848.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127146 117128845 + MGP_C3HHeJ_P0066848 Ccdc163 protein_coding protein_coding MGP_C3HHeJ_T0066849.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127152 117128323 + Ccdc163 protein_coding processed_transcript MGP_C3HHeJ_T0066850.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127161 117129067 + Ccdc163 protein_coding retained_intron MGP_C3HHeJ_T0066851.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127171 117134357 + MGP_C3HHeJ_P0066851 Ccdc163 protein_coding protein_coding MGP_C3HHeJ_T0066852.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127241 117128071 + MGP_C3HHeJ_P0066852 Ccdc163 protein_coding protein_coding MGP_C3HHeJ_T0066853.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127466 117134357 + MGP_C3HHeJ_P0066853 Ccdc163 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066854.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127467 117134356 + MGP_C3HHeJ_P0066854 Ccdc163 protein_coding protein_coding MGP_C3HHeJ_T0066856.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117131611 117161259 + Ccdc163 protein_coding processed_transcript MGP_C3HHeJ_T0066857.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117131909 117170531 + Ccdc163 protein_coding processed_transcript MGP_C3HHeJ_T0066858.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117131976 117134352 + MGP_C3HHeJ_P0066858 Ccdc163 protein_coding protein_coding MGP_C3HHeJ_T0066777.1 MGP_C3HHeJ_G0028316.1 mouse_genomes_project 4 116517511 116529715 - MGP_C3HHeJ_P0066777 Lurap1 protein_coding protein_coding MGP_C3HHeJ_T0066780.1 MGP_C3HHeJ_G0028316.1 mouse_genomes_project 4 116522625 116537051 - Lurap1 protein_coding processed_transcript MGP_C3HHeJ_T0014251.1 MGP_C3HHeJ_G0012355.1 mouse_genomes_project 4 10283397 10283769 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066353.1 MGP_C3HHeJ_G0028229.1 mouse_genomes_project 4 107280400 107306047 + MGP_C3HHeJ_P0066353 Tmem59 protein_coding protein_coding MGP_C3HHeJ_T0066354.1 MGP_C3HHeJ_G0028229.1 mouse_genomes_project 4 107280528 107295718 + MGP_C3HHeJ_P0066354 Tmem59 protein_coding protein_coding MGP_C3HHeJ_T0066355.1 MGP_C3HHeJ_G0028229.1 mouse_genomes_project 4 107280528 107305749 + MGP_C3HHeJ_P0066355 Tmem59 protein_coding protein_coding MGP_C3HHeJ_T0066356.1 MGP_C3HHeJ_G0028229.1 mouse_genomes_project 4 107280668 107295921 + Tmem59 protein_coding retained_intron MGP_C3HHeJ_T0066357.1 MGP_C3HHeJ_G0028229.1 mouse_genomes_project 4 107280727 107305557 + MGP_C3HHeJ_P0066357 Tmem59 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066358.1 MGP_C3HHeJ_G0028229.1 mouse_genomes_project 4 107281019 107306045 + Tmem59 protein_coding processed_transcript MGP_C3HHeJ_T0007849.1 MGP_C3HHeJ_G0006411.1 mouse_genomes_project 4 117994427 117998583 + Gm12827 lincRNA lincRNA MGP_C3HHeJ_T0100614.1 MGP_C3HHeJ_G0038808.1 mouse_genomes_project 4 37206069 37206195 + Gm23607 snoRNA snoRNA MGP_C3HHeJ_T0065247.1 MGP_C3HHeJ_G0027954.1 mouse_genomes_project 4 44470758 44517552 - MGP_C3HHeJ_P0065247 Xpa protein_coding protein_coding MGP_C3HHeJ_T0065250.1 MGP_C3HHeJ_G0027954.1 mouse_genomes_project 4 44494758 44505224 - Xpa protein_coding processed_transcript MGP_C3HHeJ_T0065251.1 MGP_C3HHeJ_G0027954.1 mouse_genomes_project 4 44494758 44505191 - MGP_C3HHeJ_P0065251 Xpa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065252.1 MGP_C3HHeJ_G0027954.1 mouse_genomes_project 4 44494758 44517552 - MGP_C3HHeJ_P0065252 Xpa protein_coding protein_coding MGP_C3HHeJ_T0065253.1 MGP_C3HHeJ_G0027954.1 mouse_genomes_project 4 44499879 44517461 - MGP_C3HHeJ_P0065253 Xpa protein_coding unknown_likely_coding MGP_C3HHeJ_T0065254.1 MGP_C3HHeJ_G0027954.1 mouse_genomes_project 4 44502510 44517545 - MGP_C3HHeJ_P0065254 Xpa protein_coding protein_coding MGP_C3HHeJ_T0065255.1 MGP_C3HHeJ_G0027954.1 mouse_genomes_project 4 44503953 44506118 - Xpa protein_coding processed_transcript MGP_C3HHeJ_T0067483.1 MGP_C3HHeJ_G0028483.1 mouse_genomes_project 4 126854682 126865284 - MGP_C3HHeJ_P0067483 Ncdn protein_coding protein_coding MGP_C3HHeJ_T0067484.1 MGP_C3HHeJ_G0028483.1 mouse_genomes_project 4 126855663 126865313 - Ncdn protein_coding processed_transcript MGP_C3HHeJ_T0067485.1 MGP_C3HHeJ_G0028483.1 mouse_genomes_project 4 126855663 126865302 - MGP_C3HHeJ_P0067485 Ncdn protein_coding protein_coding MGP_C3HHeJ_T0067035.1 MGP_C3HHeJ_G0028362.1 mouse_genomes_project 4 118915395 118921805 + MGP_C3HHeJ_P0067035 Med8 protein_coding protein_coding MGP_C3HHeJ_T0067036.1 MGP_C3HHeJ_G0028362.1 mouse_genomes_project 4 118915408 118921139 + MGP_C3HHeJ_P0067036 Med8 protein_coding protein_coding MGP_C3HHeJ_T0067037.1 MGP_C3HHeJ_G0028362.1 mouse_genomes_project 4 118915413 118921136 + MGP_C3HHeJ_P0067037 Med8 protein_coding protein_coding MGP_C3HHeJ_T0067038.1 MGP_C3HHeJ_G0028362.1 mouse_genomes_project 4 118915414 118919893 + Med8 protein_coding processed_transcript MGP_C3HHeJ_T0067039.1 MGP_C3HHeJ_G0028362.1 mouse_genomes_project 4 118916406 118917855 + Med8 protein_coding processed_transcript MGP_C3HHeJ_T0067040.1 MGP_C3HHeJ_G0028362.1 mouse_genomes_project 4 118917495 118918576 + Med8 protein_coding processed_transcript MGP_C3HHeJ_T0067041.1 MGP_C3HHeJ_G0028362.1 mouse_genomes_project 4 118917686 118920103 + Med8 protein_coding processed_transcript MGP_C3HHeJ_T0017884.1 MGP_C3HHeJ_G0015342.1 mouse_genomes_project 4 141921071 141928757 + Gm13032 processed_transcript processed_transcript MGP_C3HHeJ_T0069254.1 MGP_C3HHeJ_G0028890.1 mouse_genomes_project 4 156281431 156292354 + MGP_C3HHeJ_P0069254 Lrrc47 protein_coding protein_coding MGP_C3HHeJ_T0069255.1 MGP_C3HHeJ_G0028890.1 mouse_genomes_project 4 156281503 156292353 + MGP_C3HHeJ_P0069255 Lrrc47 protein_coding protein_coding MGP_C3HHeJ_T0069256.1 MGP_C3HHeJ_G0028890.1 mouse_genomes_project 4 156287118 156289911 + Lrrc47 protein_coding retained_intron MGP_C3HHeJ_T0069257.1 MGP_C3HHeJ_G0028890.1 mouse_genomes_project 4 156289793 156291732 + MGP_C3HHeJ_P0069257 Lrrc47 protein_coding protein_coding MGP_C3HHeJ_T0069258.1 MGP_C3HHeJ_G0028890.1 mouse_genomes_project 4 156290479 156291508 + MGP_C3HHeJ_P0069258 Lrrc47 protein_coding protein_coding MGP_C3HHeJ_T0065669.1 MGP_C3HHeJ_G0028070.1 mouse_genomes_project 4 62770618 62800402 - MGP_C3HHeJ_P0065669 Tnfsf8 protein_coding protein_coding MGP_C3HHeJ_T0064662.1 MGP_C3HHeJ_G0027833.1 mouse_genomes_project 4 32523974 32744915 - MGP_C3HHeJ_P0064662 Mob3b protein_coding protein_coding MGP_C3HHeJ_T0064663.1 MGP_C3HHeJ_G0027833.1 mouse_genomes_project 4 32666277 32744915 - Mob3b protein_coding processed_transcript MGP_C3HHeJ_T0067204.1 MGP_C3HHeJ_G0028410.1 mouse_genomes_project 4 121241858 121243107 + MGP_C3HHeJ_P0067204 Cited4 protein_coding protein_coding MGP_C3HHeJ_T0064398.1 MGP_C3HHeJ_G0027764.1 mouse_genomes_project 4 10602324 10752267 + MGP_C3HHeJ_P0064398 Runx1t1 protein_coding protein_coding MGP_C3HHeJ_T0064399.1 MGP_C3HHeJ_G0027764.1 mouse_genomes_project 4 10610186 10701988 + Runx1t1 protein_coding processed_transcript MGP_C3HHeJ_T0064400.1 MGP_C3HHeJ_G0027764.1 mouse_genomes_project 4 10610186 10752246 + MGP_C3HHeJ_P0064400 Runx1t1 protein_coding protein_coding MGP_C3HHeJ_T0064401.1 MGP_C3HHeJ_G0027764.1 mouse_genomes_project 4 10630857 10748928 + MGP_C3HHeJ_P0064401 Runx1t1 protein_coding protein_coding MGP_C3HHeJ_T0064402.1 MGP_C3HHeJ_G0027764.1 mouse_genomes_project 4 10644244 10749721 + MGP_C3HHeJ_P0064402 Runx1t1 protein_coding protein_coding MGP_C3HHeJ_T0064403.1 MGP_C3HHeJ_G0027764.1 mouse_genomes_project 4 10747824 10748567 + Runx1t1 protein_coding processed_transcript MGP_C3HHeJ_T0066038.1 MGP_C3HHeJ_G0028161.1 mouse_genomes_project 4 96518163 96585173 - MGP_C3HHeJ_P0066038 Gm12695 protein_coding protein_coding MGP_C3HHeJ_T0065336.1 MGP_C3HHeJ_G0027976.1 mouse_genomes_project 4 46990134 47076242 + MGP_C3HHeJ_P0065336 Tmeff1 protein_coding protein_coding MGP_C3HHeJ_T0065337.1 MGP_C3HHeJ_G0027976.1 mouse_genomes_project 4 46990325 47075196 + MGP_C3HHeJ_P0065337 Tmeff1 protein_coding protein_coding MGP_C3HHeJ_T0065338.1 MGP_C3HHeJ_G0027976.1 mouse_genomes_project 4 46990511 47075581 + MGP_C3HHeJ_P0065338 Tmeff1 protein_coding protein_coding MGP_C3HHeJ_T0065339.1 MGP_C3HHeJ_G0027976.1 mouse_genomes_project 4 47044934 47073350 + MGP_C3HHeJ_P0065339 Tmeff1 protein_coding protein_coding MGP_C3HHeJ_T0067992.1 MGP_C3HHeJ_G0028585.1 mouse_genomes_project 4 133744388 133756443 + MGP_C3HHeJ_P0067992 Map3k6 protein_coding protein_coding MGP_C3HHeJ_T0067993.1 MGP_C3HHeJ_G0028585.1 mouse_genomes_project 4 133750750 133751599 + Map3k6 protein_coding processed_transcript MGP_C3HHeJ_T0067994.1 MGP_C3HHeJ_G0028585.1 mouse_genomes_project 4 133750826 133751627 + Map3k6 protein_coding processed_transcript MGP_C3HHeJ_T0067995.1 MGP_C3HHeJ_G0028585.1 mouse_genomes_project 4 133754361 133756442 + Map3k6 protein_coding processed_transcript MGP_C3HHeJ_T0014624.1 MGP_C3HHeJ_G0012728.1 mouse_genomes_project 4 136614760 136614974 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014393.1 MGP_C3HHeJ_G0012497.1 mouse_genomes_project 4 53679487 53679848 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068373.1 MGP_C3HHeJ_G0028676.1 mouse_genomes_project 4 138134613 138175850 - MGP_C3HHeJ_P0068373 Cdc42 protein_coding protein_coding MGP_C3HHeJ_T0068374.1 MGP_C3HHeJ_G0028676.1 mouse_genomes_project 4 138136679 138175829 - MGP_C3HHeJ_P0068374 Cdc42 protein_coding protein_coding MGP_C3HHeJ_T0064463.1 MGP_C3HHeJ_G0027789.1 mouse_genomes_project 4 18773121 18797482 + MGP_C3HHeJ_P0064463 Ccnc protein_coding protein_coding MGP_C3HHeJ_T0064464.1 MGP_C3HHeJ_G0027789.1 mouse_genomes_project 4 18773146 18797482 + MGP_C3HHeJ_P0064464 Ccnc protein_coding protein_coding MGP_C3HHeJ_T0064465.1 MGP_C3HHeJ_G0027789.1 mouse_genomes_project 4 18773146 18806856 + MGP_C3HHeJ_P0064465 Ccnc protein_coding protein_coding MGP_C3HHeJ_T0064466.1 MGP_C3HHeJ_G0027789.1 mouse_genomes_project 4 18773161 18784695 + Ccnc protein_coding processed_transcript MGP_C3HHeJ_T0064467.1 MGP_C3HHeJ_G0027789.1 mouse_genomes_project 4 18773173 18794898 + Ccnc protein_coding processed_transcript MGP_C3HHeJ_T0064468.1 MGP_C3HHeJ_G0027789.1 mouse_genomes_project 4 18773175 18794898 + MGP_C3HHeJ_P0064468 Ccnc protein_coding protein_coding MGP_C3HHeJ_T0064469.1 MGP_C3HHeJ_G0027789.1 mouse_genomes_project 4 18773178 18778770 + Ccnc protein_coding processed_transcript MGP_C3HHeJ_T0064470.1 MGP_C3HHeJ_G0027789.1 mouse_genomes_project 4 18773187 18795490 + Ccnc protein_coding processed_transcript MGP_C3HHeJ_T0066705.1 MGP_C3HHeJ_G0028301.1 mouse_genomes_project 4 115970910 116005189 - MGP_C3HHeJ_P0066705 Cyp4b1 protein_coding protein_coding MGP_C3HHeJ_T0066706.1 MGP_C3HHeJ_G0028301.1 mouse_genomes_project 4 115970910 115996694 - MGP_C3HHeJ_P0066706 Cyp4b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066707.1 MGP_C3HHeJ_G0028301.1 mouse_genomes_project 4 115971813 115999479 - MGP_C3HHeJ_P0066707 Cyp4b1 protein_coding protein_coding MGP_C3HHeJ_T0066708.1 MGP_C3HHeJ_G0028301.1 mouse_genomes_project 4 115978617 115992225 - Cyp4b1 protein_coding retained_intron MGP_C3HHeJ_T0010572.1 MGP_C3HHeJ_G0008705.1 mouse_genomes_project 4 158408836 158408926 - Mir200a miRNA miRNA MGP_C3HHeJ_T0067331.1 MGP_C3HHeJ_G0028447.1 mouse_genomes_project 4 124704777 124712074 + MGP_C3HHeJ_P0067331 Fhl3 protein_coding protein_coding MGP_C3HHeJ_T0067332.1 MGP_C3HHeJ_G0028447.1 mouse_genomes_project 4 124709537 124711892 + MGP_C3HHeJ_P0067332 Fhl3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069092.1 MGP_C3HHeJ_G0028863.1 mouse_genomes_project 4 153151348 153192334 - MGP_C3HHeJ_P0069092 Per3 protein_coding protein_coding MGP_C3HHeJ_T0069093.1 MGP_C3HHeJ_G0028863.1 mouse_genomes_project 4 153151482 153163829 - Per3 protein_coding processed_transcript MGP_C3HHeJ_T0069094.1 MGP_C3HHeJ_G0028863.1 mouse_genomes_project 4 153159137 153179186 - Per3 protein_coding retained_intron MGP_C3HHeJ_T0069095.1 MGP_C3HHeJ_G0028863.1 mouse_genomes_project 4 153159137 153192334 - MGP_C3HHeJ_P0069095 Per3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069096.1 MGP_C3HHeJ_G0028863.1 mouse_genomes_project 4 153171872 153192334 - Per3 protein_coding retained_intron MGP_C3HHeJ_T0066650.1 MGP_C3HHeJ_G0028279.1 mouse_genomes_project 4 112218094 112237279 + MGP_C3HHeJ_P0066650 Skint1 protein_coding protein_coding MGP_C3HHeJ_T0066651.1 MGP_C3HHeJ_G0028279.1 mouse_genomes_project 4 112218094 112241158 + MGP_C3HHeJ_P0066651 Skint1 protein_coding protein_coding MGP_C3HHeJ_T0066652.1 MGP_C3HHeJ_G0028279.1 mouse_genomes_project 4 112218094 112237279 + MGP_C3HHeJ_P0066652 Skint1 protein_coding protein_coding MGP_C3HHeJ_T0066653.1 MGP_C3HHeJ_G0028279.1 mouse_genomes_project 4 112218094 112231628 + MGP_C3HHeJ_P0066653 Skint1 protein_coding protein_coding MGP_C3HHeJ_T0066654.1 MGP_C3HHeJ_G0028279.1 mouse_genomes_project 4 112218107 112224338 + Skint1 protein_coding retained_intron MGP_C3HHeJ_T0067920.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132996730 133018232 + MGP_C3HHeJ_P0067920 Dnajc8 protein_coding protein_coding MGP_C3HHeJ_T0067921.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132996730 133008381 + MGP_C3HHeJ_P0067921 Dnajc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067922.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132996747 133018151 + Dnajc8 protein_coding retained_intron MGP_C3HHeJ_T0067923.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132996756 133005938 + MGP_C3HHeJ_P0067923 Dnajc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067924.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132996757 133017687 + MGP_C3HHeJ_P0067924 Dnajc8 protein_coding protein_coding MGP_C3HHeJ_T0067925.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132996761 133013399 + MGP_C3HHeJ_P0067925 Dnajc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067926.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132996761 133017710 + MGP_C3HHeJ_P0067926 Dnajc8 protein_coding protein_coding MGP_C3HHeJ_T0067927.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132996820 133017629 + MGP_C3HHeJ_P0067927 Dnajc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067928.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132996839 133017948 + MGP_C3HHeJ_P0067928 Dnajc8 protein_coding protein_coding MGP_C3HHeJ_T0067929.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132997208 133006355 + Dnajc8 protein_coding retained_intron MGP_C3HHeJ_T0067930.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 133008393 133017684 + MGP_C3HHeJ_P0067930 Dnajc8 protein_coding protein_coding MGP_C3HHeJ_T0067931.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 133015807 133017933 + Dnajc8 protein_coding retained_intron MGP_C3HHeJ_T0067264.1 MGP_C3HHeJ_G0028430.1 mouse_genomes_project 4 123019136 123022621 + MGP_C3HHeJ_P0067264 protein_coding protein_coding MGP_C3HHeJ_T0067875.1 MGP_C3HHeJ_G0028559.1 mouse_genomes_project 4 132517629 132553319 - MGP_C3HHeJ_P0067875 Oprd1 protein_coding protein_coding MGP_C3HHeJ_T0100607.1 MGP_C3HHeJ_G0038801.1 mouse_genomes_project 4 18365541 18365626 + Gm25977 snoRNA snoRNA MGP_C3HHeJ_T0066974.1 MGP_C3HHeJ_G0028352.1 mouse_genomes_project 4 118366720 118368039 - Ccdc24 protein_coding processed_transcript MGP_C3HHeJ_T0066975.1 MGP_C3HHeJ_G0028352.1 mouse_genomes_project 4 118367813 118370431 - Ccdc24 protein_coding retained_intron MGP_C3HHeJ_T0066977.1 MGP_C3HHeJ_G0028352.1 mouse_genomes_project 4 118368689 118371651 - MGP_C3HHeJ_P0066977 Ccdc24 protein_coding protein_coding MGP_C3HHeJ_T0066978.1 MGP_C3HHeJ_G0028352.1 mouse_genomes_project 4 118368689 118371281 - MGP_C3HHeJ_P0066978 Ccdc24 protein_coding protein_coding MGP_C3HHeJ_T0066979.1 MGP_C3HHeJ_G0028352.1 mouse_genomes_project 4 118368830 118370465 - Ccdc24 protein_coding processed_transcript MGP_C3HHeJ_T0066980.1 MGP_C3HHeJ_G0028352.1 mouse_genomes_project 4 118369208 118371688 - MGP_C3HHeJ_P0066980 Ccdc24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066981.1 MGP_C3HHeJ_G0028352.1 mouse_genomes_project 4 118369605 118371651 - MGP_C3HHeJ_P0066981 Ccdc24 protein_coding protein_coding MGP_C3HHeJ_T0007756.1 MGP_C3HHeJ_G0006337.1 mouse_genomes_project 4 46381471 46383277 + Gm12434 lincRNA lincRNA MGP_C3HHeJ_T0069173.1 MGP_C3HHeJ_G0028876.1 mouse_genomes_project 4 154346287 154349890 + MGP_C3HHeJ_P0069173 Hes2 protein_coding protein_coding MGP_C3HHeJ_T0069174.1 MGP_C3HHeJ_G0028876.1 mouse_genomes_project 4 154346969 154348021 + Hes2 protein_coding processed_transcript MGP_C3HHeJ_T0099364.1 MGP_C3HHeJ_G0037558.1 mouse_genomes_project 4 95278881 95279048 + Gm25004 snRNA snRNA MGP_C3HHeJ_T0014660.1 MGP_C3HHeJ_G0012764.1 mouse_genomes_project 4 154891916 154892172 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064595.1 MGP_C3HHeJ_G0027816.1 mouse_genomes_project 4 30520483 30557159 + MGP_C3HHeJ_P0064595 Gabrr2 protein_coding protein_coding MGP_C3HHeJ_T0064596.1 MGP_C3HHeJ_G0027816.1 mouse_genomes_project 4 30520596 30557159 + MGP_C3HHeJ_P0064596 Gabrr2 protein_coding protein_coding MGP_C3HHeJ_T0064597.1 MGP_C3HHeJ_G0027816.1 mouse_genomes_project 4 30538641 30546841 + MGP_C3HHeJ_P0064597 Gabrr2 protein_coding protein_coding MGP_C3HHeJ_T0064598.1 MGP_C3HHeJ_G0027816.1 mouse_genomes_project 4 30541344 30547097 + MGP_C3HHeJ_P0064598 Gabrr2 protein_coding protein_coding MGP_C3HHeJ_T0064368.1 MGP_C3HHeJ_G0027757.1 mouse_genomes_project 4 8776744 8785013 - MGP_C3HHeJ_P0064368 Pdp1 protein_coding protein_coding MGP_C3HHeJ_T0064369.1 MGP_C3HHeJ_G0027757.1 mouse_genomes_project 4 8778367 8784542 - MGP_C3HHeJ_P0064369 Pdp1 protein_coding protein_coding MGP_C3HHeJ_T0064370.1 MGP_C3HHeJ_G0027757.1 mouse_genomes_project 4 8778367 8784382 - MGP_C3HHeJ_P0064370 Pdp1 protein_coding protein_coding MGP_C3HHeJ_T0064371.1 MGP_C3HHeJ_G0027757.1 mouse_genomes_project 4 8778367 8784488 - MGP_C3HHeJ_P0064371 Pdp1 protein_coding protein_coding MGP_C3HHeJ_T0064372.1 MGP_C3HHeJ_G0027757.1 mouse_genomes_project 4 8778367 8784988 - MGP_C3HHeJ_P0064372 Pdp1 protein_coding protein_coding MGP_C3HHeJ_T0064373.1 MGP_C3HHeJ_G0027757.1 mouse_genomes_project 4 8778371 8784981 - MGP_C3HHeJ_P0064373 Pdp1 protein_coding protein_coding MGP_C3HHeJ_T0014634.1 MGP_C3HHeJ_G0012738.1 mouse_genomes_project 4 142488534 142488738 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007737.1 MGP_C3HHeJ_G0006319.1 mouse_genomes_project 4 27805378 27896730 + Gm11924 lincRNA lincRNA MGP_C3HHeJ_T0004439.1 MGP_C3HHeJ_G0003854.1 mouse_genomes_project 4 117445906 117446753 - 1700021J08Rik antisense antisense MGP_C3HHeJ_T0010508.1 MGP_C3HHeJ_G0008641.1 mouse_genomes_project 4 46604738 46604835 - Mir1958 miRNA miRNA MGP_C3HHeJ_T0067081.1 MGP_C3HHeJ_G0028383.1 mouse_genomes_project 4 119450132 119451074 - MGP_C3HHeJ_P0067081 protein_coding protein_coding MGP_C3HHeJ_T0066141.1 MGP_C3HHeJ_G0028183.1 mouse_genomes_project 4 100930150 100930549 - MGP_C3HHeJ_P0066141 Gm10577 protein_coding protein_coding MGP_C3HHeJ_T0065744.1 MGP_C3HHeJ_G0028088.1 mouse_genomes_project 4 79327791 79328268 + MGP_C3HHeJ_P0065744 protein_coding protein_coding MGP_C3HHeJ_T0007927.1 MGP_C3HHeJ_G0006463.1 mouse_genomes_project 4 141471205 141476662 + Gm13017 lincRNA lincRNA MGP_C3HHeJ_T0014416.1 MGP_C3HHeJ_G0012520.1 mouse_genomes_project 4 65390904 65391242 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007936.1 MGP_C3HHeJ_G0006472.1 mouse_genomes_project 4 150261317 150270928 + Gm13206 lincRNA lincRNA MGP_C3HHeJ_T0066695.1 MGP_C3HHeJ_G0028297.1 mouse_genomes_project 4 115783535 115793468 - MGP_C3HHeJ_P0066695 Cyp4a14 protein_coding protein_coding MGP_C3HHeJ_T0066696.1 MGP_C3HHeJ_G0028297.1 mouse_genomes_project 4 115791403 115793466 - Cyp4a14 protein_coding processed_transcript MGP_C3HHeJ_T0066668.1 MGP_C3HHeJ_G0028288.1 mouse_genomes_project 4 115231117 115258498 - MGP_C3HHeJ_P0066668 Cmpk1 protein_coding protein_coding MGP_C3HHeJ_T0066669.1 MGP_C3HHeJ_G0028288.1 mouse_genomes_project 4 115234720 115258406 - MGP_C3HHeJ_P0066669 Cmpk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066670.1 MGP_C3HHeJ_G0028288.1 mouse_genomes_project 4 115240651 115258329 - MGP_C3HHeJ_P0066670 Cmpk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066671.1 MGP_C3HHeJ_G0028288.1 mouse_genomes_project 4 115256074 115258406 - Cmpk1 protein_coding processed_transcript MGP_C3HHeJ_T0064332.1 MGP_C3HHeJ_G0027749.1 mouse_genomes_project 4 7964289 8021313 - MGP_C3HHeJ_P0064332 Ints8 protein_coding protein_coding MGP_C3HHeJ_T0064333.1 MGP_C3HHeJ_G0027749.1 mouse_genomes_project 4 7969311 7979493 - Ints8 protein_coding processed_transcript MGP_C3HHeJ_T0064334.1 MGP_C3HHeJ_G0027749.1 mouse_genomes_project 4 7969581 8002173 - Ints8 protein_coding processed_transcript MGP_C3HHeJ_T0064335.1 MGP_C3HHeJ_G0027749.1 mouse_genomes_project 4 7969583 8021313 - MGP_C3HHeJ_P0064335 Ints8 protein_coding protein_coding MGP_C3HHeJ_T0064336.1 MGP_C3HHeJ_G0027749.1 mouse_genomes_project 4 7969583 8021313 - MGP_C3HHeJ_P0064336 Ints8 protein_coding protein_coding MGP_C3HHeJ_T0064337.1 MGP_C3HHeJ_G0027749.1 mouse_genomes_project 4 7969584 7980060 - Ints8 protein_coding processed_transcript MGP_C3HHeJ_T0064338.1 MGP_C3HHeJ_G0027749.1 mouse_genomes_project 4 7974100 7986210 - Ints8 protein_coding processed_transcript MGP_C3HHeJ_T0064339.1 MGP_C3HHeJ_G0027749.1 mouse_genomes_project 4 7999192 8002626 - Ints8 protein_coding processed_transcript MGP_C3HHeJ_T0017813.1 MGP_C3HHeJ_G0015299.1 mouse_genomes_project 4 22108452 22399595 + processed_transcript processed_transcript MGP_C3HHeJ_T0010523.1 MGP_C3HHeJ_G0008656.1 mouse_genomes_project 4 101266672 101266755 - Mir101a miRNA miRNA MGP_C3HHeJ_T0066793.1 MGP_C3HHeJ_G0028318.1 mouse_genomes_project 4 116559550 116560469 + MGP_C3HHeJ_P0066793 1700042G07Rik protein_coding protein_coding MGP_C3HHeJ_T0100613.1 MGP_C3HHeJ_G0038807.1 mouse_genomes_project 4 34975579 34975700 + Gm22732 snoRNA snoRNA MGP_C3HHeJ_T0007787.1 MGP_C3HHeJ_G0006362.1 mouse_genomes_project 4 67385158 67394463 - Gm12911 lincRNA lincRNA MGP_C3HHeJ_T0064346.1 MGP_C3HHeJ_G0027751.1 mouse_genomes_project 4 8108907 8164317 - MGP_C3HHeJ_P0064346 Esrp1 protein_coding protein_coding MGP_C3HHeJ_T0064347.1 MGP_C3HHeJ_G0027751.1 mouse_genomes_project 4 8108907 8164421 - MGP_C3HHeJ_P0064347 Esrp1 protein_coding protein_coding MGP_C3HHeJ_T0064348.1 MGP_C3HHeJ_G0027751.1 mouse_genomes_project 4 8109012 8164421 - MGP_C3HHeJ_P0064348 Esrp1 protein_coding protein_coding MGP_C3HHeJ_T0064349.1 MGP_C3HHeJ_G0027751.1 mouse_genomes_project 4 8109979 8144022 - MGP_C3HHeJ_P0064349 Esrp1 protein_coding protein_coding MGP_C3HHeJ_T0064350.1 MGP_C3HHeJ_G0027751.1 mouse_genomes_project 4 8109979 8164317 - MGP_C3HHeJ_P0064350 Esrp1 protein_coding protein_coding MGP_C3HHeJ_T0064351.1 MGP_C3HHeJ_G0027751.1 mouse_genomes_project 4 8117552 8121064 - Esrp1 protein_coding processed_transcript MGP_C3HHeJ_T0064352.1 MGP_C3HHeJ_G0027751.1 mouse_genomes_project 4 8134400 8164032 - MGP_C3HHeJ_P0064352 Esrp1 protein_coding protein_coding MGP_C3HHeJ_T0007938.1 MGP_C3HHeJ_G0006474.1 mouse_genomes_project 4 150698044 150700926 + Gm13203 lincRNA lincRNA MGP_C3HHeJ_T0007790.1 MGP_C3HHeJ_G0006365.1 mouse_genomes_project 4 81105972 81110274 + Gm11412 lincRNA lincRNA MGP_C3HHeJ_T0010505.1 MGP_C3HHeJ_G0008638.1 mouse_genomes_project 4 42851137 42851215 - Mir5120 miRNA miRNA MGP_C3HHeJ_T0010550.1 MGP_C3HHeJ_G0008683.1 mouse_genomes_project 4 135179851 135179980 - Mir6403 miRNA miRNA MGP_C3HHeJ_T0007928.1 MGP_C3HHeJ_G0006464.1 mouse_genomes_project 4 141506099 141513387 + Gm13021 lincRNA lincRNA MGP_C3HHeJ_T0068347.1 MGP_C3HHeJ_G0028666.1 mouse_genomes_project 4 137324397 137376836 - MGP_C3HHeJ_P0068347 Kdm1a protein_coding protein_coding MGP_C3HHeJ_T0068348.1 MGP_C3HHeJ_G0028666.1 mouse_genomes_project 4 137324401 137376800 - MGP_C3HHeJ_P0068348 Kdm1a protein_coding protein_coding MGP_C3HHeJ_T0068349.1 MGP_C3HHeJ_G0028666.1 mouse_genomes_project 4 137324711 137376421 - MGP_C3HHeJ_P0068349 Kdm1a protein_coding protein_coding MGP_C3HHeJ_T0068350.1 MGP_C3HHeJ_G0028666.1 mouse_genomes_project 4 137324740 137326404 - Kdm1a protein_coding retained_intron MGP_C3HHeJ_T0068351.1 MGP_C3HHeJ_G0028666.1 mouse_genomes_project 4 137325735 137327034 - Kdm1a protein_coding retained_intron MGP_C3HHeJ_T0068352.1 MGP_C3HHeJ_G0028666.1 mouse_genomes_project 4 137326982 137329174 - Kdm1a protein_coding retained_intron MGP_C3HHeJ_T0068353.1 MGP_C3HHeJ_G0028666.1 mouse_genomes_project 4 137329056 137335167 - Kdm1a protein_coding retained_intron MGP_C3HHeJ_T0068354.1 MGP_C3HHeJ_G0028666.1 mouse_genomes_project 4 137329084 137342272 - MGP_C3HHeJ_P0068354 Kdm1a protein_coding protein_coding MGP_C3HHeJ_T0068355.1 MGP_C3HHeJ_G0028666.1 mouse_genomes_project 4 137332198 137351063 - MGP_C3HHeJ_P0068355 Kdm1a protein_coding protein_coding MGP_C3HHeJ_T0069424.1 MGP_C3HHeJ_G0028918.1 mouse_genomes_project 4 157893257 157921684 + MGP_C3HHeJ_P0069424 Nadk protein_coding protein_coding MGP_C3HHeJ_T0069425.1 MGP_C3HHeJ_G0028918.1 mouse_genomes_project 4 157894596 157921688 + MGP_C3HHeJ_P0069425 Nadk protein_coding protein_coding MGP_C3HHeJ_T0069426.1 MGP_C3HHeJ_G0028918.1 mouse_genomes_project 4 157894722 157907780 + Nadk protein_coding processed_transcript MGP_C3HHeJ_T0069427.1 MGP_C3HHeJ_G0028918.1 mouse_genomes_project 4 157894738 157907774 + MGP_C3HHeJ_P0069427 Nadk protein_coding protein_coding MGP_C3HHeJ_T0069428.1 MGP_C3HHeJ_G0028918.1 mouse_genomes_project 4 157894804 157910070 + MGP_C3HHeJ_P0069428 Nadk protein_coding protein_coding MGP_C3HHeJ_T0069429.1 MGP_C3HHeJ_G0028918.1 mouse_genomes_project 4 157894968 157910024 + MGP_C3HHeJ_P0069429 Nadk protein_coding protein_coding MGP_C3HHeJ_T0069430.1 MGP_C3HHeJ_G0028918.1 mouse_genomes_project 4 157913181 157921688 + MGP_C3HHeJ_P0069430 Nadk protein_coding protein_coding MGP_C3HHeJ_T0069431.1 MGP_C3HHeJ_G0028918.1 mouse_genomes_project 4 157917463 157920307 + Nadk protein_coding processed_transcript MGP_C3HHeJ_T0007875.1 MGP_C3HHeJ_G0006428.1 mouse_genomes_project 4 128821426 128822403 + Gm12958 lincRNA lincRNA MGP_C3HHeJ_T0064422.1 MGP_C3HHeJ_G0027772.1 mouse_genomes_project 4 12807656 12835926 - MGP_C3HHeJ_P0064422 Decr1 protein_coding protein_coding MGP_C3HHeJ_T0064423.1 MGP_C3HHeJ_G0027772.1 mouse_genomes_project 4 12823395 12835694 - Decr1 protein_coding processed_transcript MGP_C3HHeJ_T0064424.1 MGP_C3HHeJ_G0027772.1 mouse_genomes_project 4 12834109 12834908 - Decr1 protein_coding processed_transcript MGP_C3HHeJ_T0007781.1 MGP_C3HHeJ_G0006356.1 mouse_genomes_project 4 61637038 61641050 - Gm11211 lincRNA lincRNA MGP_C3HHeJ_T0004387.1 MGP_C3HHeJ_G0003818.1 mouse_genomes_project 4 60972218 60974567 + antisense antisense MGP_C3HHeJ_T0065511.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57467208 57587493 - MGP_C3HHeJ_P0065511 AI314180 protein_coding protein_coding MGP_C3HHeJ_T0065512.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57478931 57480153 - AI314180 protein_coding processed_transcript MGP_C3HHeJ_T0065513.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57479737 57586686 - MGP_C3HHeJ_P0065513 AI314180 protein_coding protein_coding MGP_C3HHeJ_T0065514.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57483608 57487867 - AI314180 protein_coding processed_transcript MGP_C3HHeJ_T0065515.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57487617 57502326 - AI314180 protein_coding processed_transcript MGP_C3HHeJ_T0065516.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57498804 57586683 - MGP_C3HHeJ_P0065516 AI314180 protein_coding protein_coding MGP_C3HHeJ_T0065517.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57500963 57503175 - AI314180 protein_coding processed_transcript MGP_C3HHeJ_T0065518.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57504354 57515481 - AI314180 protein_coding processed_transcript MGP_C3HHeJ_T0065519.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57514746 57587448 - MGP_C3HHeJ_P0065519 AI314180 protein_coding protein_coding MGP_C3HHeJ_T0065520.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57534645 57587493 - MGP_C3HHeJ_P0065520 AI314180 protein_coding protein_coding MGP_C3HHeJ_T0065521.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57543223 57586658 - MGP_C3HHeJ_P0065521 AI314180 protein_coding protein_coding MGP_C3HHeJ_T0067546.1 MGP_C3HHeJ_G0028499.1 mouse_genomes_project 4 128759166 128765590 - protein_coding processed_transcript MGP_C3HHeJ_T0067547.1 MGP_C3HHeJ_G0028499.1 mouse_genomes_project 4 128761002 128786882 - MGP_C3HHeJ_P0067547 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067548.1 MGP_C3HHeJ_G0028499.1 mouse_genomes_project 4 128761231 128784503 - MGP_C3HHeJ_P0067548 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067549.1 MGP_C3HHeJ_G0028499.1 mouse_genomes_project 4 128778286 128786874 - protein_coding retained_intron MGP_C3HHeJ_T0067550.1 MGP_C3HHeJ_G0028499.1 mouse_genomes_project 4 128781290 128786835 - MGP_C3HHeJ_P0067550 protein_coding protein_coding MGP_C3HHeJ_T0067551.1 MGP_C3HHeJ_G0028499.1 mouse_genomes_project 4 128781324 128786821 - MGP_C3HHeJ_P0067551 protein_coding protein_coding MGP_C3HHeJ_T0014487.1 MGP_C3HHeJ_G0012591.1 mouse_genomes_project 4 93020523 93021399 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064699.1 MGP_C3HHeJ_G0027842.1 mouse_genomes_project 4 38380427 38385351 + MGP_C3HHeJ_P0064699 Tmem215 protein_coding protein_coding MGP_C3HHeJ_T0064700.1 MGP_C3HHeJ_G0027842.1 mouse_genomes_project 4 38381378 38383843 + MGP_C3HHeJ_P0064700 Tmem215 protein_coding protein_coding MGP_C3HHeJ_T0010492.1 MGP_C3HHeJ_G0008625.1 mouse_genomes_project 4 13036092 13036188 - Gm22690 miRNA miRNA MGP_C3HHeJ_T0065305.1 MGP_C3HHeJ_G0027969.1 mouse_genomes_project 4 45846288 45854815 + MGP_C3HHeJ_P0065305 protein_coding protein_coding MGP_C3HHeJ_T0065306.1 MGP_C3HHeJ_G0027969.1 mouse_genomes_project 4 45846394 45854701 + MGP_C3HHeJ_P0065306 protein_coding protein_coding MGP_C3HHeJ_T0065307.1 MGP_C3HHeJ_G0027969.1 mouse_genomes_project 4 45846438 45854667 + MGP_C3HHeJ_P0065307 protein_coding protein_coding MGP_C3HHeJ_T0065308.1 MGP_C3HHeJ_G0027969.1 mouse_genomes_project 4 45846578 45852364 + protein_coding retained_intron MGP_C3HHeJ_T0066662.1 MGP_C3HHeJ_G0028282.1 mouse_genomes_project 4 113592979 113618981 + MGP_C3HHeJ_P0066662 Skint11 protein_coding protein_coding MGP_C3HHeJ_T0066176.1 MGP_C3HHeJ_G0028193.1 mouse_genomes_project 4 101875553 101880456 + MGP_C3HHeJ_P0066176 protein_coding protein_coding MGP_C3HHeJ_T0014271.1 MGP_C3HHeJ_G0012375.1 mouse_genomes_project 4 14221004 14221265 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098291.1 MGP_C3HHeJ_G0036503.1 mouse_genomes_project 4 86089920 86090051 - Scarna8 scaRNA scaRNA MGP_C3HHeJ_T0064723.1 MGP_C3HHeJ_G0027848.1 mouse_genomes_project 4 38876316 38889118 - MGP_C3HHeJ_P0064723 Bag1 protein_coding protein_coding MGP_C3HHeJ_T0064724.1 MGP_C3HHeJ_G0027848.1 mouse_genomes_project 4 38876317 38889131 - MGP_C3HHeJ_P0064724 Bag1 protein_coding protein_coding MGP_C3HHeJ_T0064725.1 MGP_C3HHeJ_G0027848.1 mouse_genomes_project 4 38876319 38889080 - MGP_C3HHeJ_P0064725 Bag1 protein_coding protein_coding MGP_C3HHeJ_T0014383.1 MGP_C3HHeJ_G0012487.1 mouse_genomes_project 4 50966713 50966971 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007779.1 MGP_C3HHeJ_G0006354.1 mouse_genomes_project 4 58014281 58017389 + Gm12596 lincRNA lincRNA MGP_C3HHeJ_T0007932.1 MGP_C3HHeJ_G0006468.1 mouse_genomes_project 4 142401038 142402276 + Gm13056 lincRNA lincRNA MGP_C3HHeJ_T0004473.1 MGP_C3HHeJ_G0003881.1 mouse_genomes_project 4 132961624 132967716 - Gm12981 antisense antisense MGP_C3HHeJ_T0069436.1 MGP_C3HHeJ_G0028920.1 mouse_genomes_project 4 157946789 157978793 - MGP_C3HHeJ_P0069436 Gm10563 protein_coding protein_coding MGP_C3HHeJ_T0007733.1 MGP_C3HHeJ_G0006315.1 mouse_genomes_project 4 21541175 21541690 - Gm27243 lincRNA lincRNA MGP_C3HHeJ_T0068196.1 MGP_C3HHeJ_G0028634.1 mouse_genomes_project 4 135558908 135562979 + Rsrp1 protein_coding retained_intron MGP_C3HHeJ_T0068197.1 MGP_C3HHeJ_G0028634.1 mouse_genomes_project 4 135558908 135562979 + MGP_C3HHeJ_P0068197 Rsrp1 protein_coding protein_coding MGP_C3HHeJ_T0068198.1 MGP_C3HHeJ_G0028634.1 mouse_genomes_project 4 135558909 135560737 + Rsrp1 protein_coding processed_transcript MGP_C3HHeJ_T0068199.1 MGP_C3HHeJ_G0028634.1 mouse_genomes_project 4 135558942 135560647 + Rsrp1 protein_coding processed_transcript MGP_C3HHeJ_T0068200.1 MGP_C3HHeJ_G0028634.1 mouse_genomes_project 4 135558961 135562680 + Rsrp1 protein_coding processed_transcript MGP_C3HHeJ_T0068201.1 MGP_C3HHeJ_G0028634.1 mouse_genomes_project 4 135559776 135562680 + Rsrp1 protein_coding processed_transcript MGP_C3HHeJ_T0068202.1 MGP_C3HHeJ_G0028634.1 mouse_genomes_project 4 135560026 135560669 + Rsrp1 protein_coding processed_transcript MGP_C3HHeJ_T0068203.1 MGP_C3HHeJ_G0028634.1 mouse_genomes_project 4 135560759 135562261 + Rsrp1 protein_coding processed_transcript MGP_C3HHeJ_T0068653.1 MGP_C3HHeJ_G0028740.1 mouse_genomes_project 4 142427268 142456757 + MGP_C3HHeJ_P0068653 Epha2 protein_coding protein_coding MGP_C3HHeJ_T0068654.1 MGP_C3HHeJ_G0028740.1 mouse_genomes_project 4 142428435 142434739 + Epha2 protein_coding processed_transcript MGP_C3HHeJ_T0068655.1 MGP_C3HHeJ_G0028740.1 mouse_genomes_project 4 142434898 142436963 + Epha2 protein_coding processed_transcript MGP_C3HHeJ_T0068656.1 MGP_C3HHeJ_G0028740.1 mouse_genomes_project 4 142444263 142448274 + Epha2 protein_coding processed_transcript MGP_C3HHeJ_T0067945.1 MGP_C3HHeJ_G0028573.1 mouse_genomes_project 4 133195488 133204121 - MGP_C3HHeJ_P0067945 Xkr8 protein_coding protein_coding MGP_C3HHeJ_T0067946.1 MGP_C3HHeJ_G0028573.1 mouse_genomes_project 4 133200077 133204103 - Xkr8 protein_coding processed_transcript MGP_C3HHeJ_T0067947.1 MGP_C3HHeJ_G0028573.1 mouse_genomes_project 4 133202478 133204058 - Xkr8 protein_coding processed_transcript MGP_C3HHeJ_T0017816.1 MGP_C3HHeJ_G0015302.1 mouse_genomes_project 4 32471169 32476722 - Platr9 processed_transcript processed_transcript MGP_C3HHeJ_T0017817.1 MGP_C3HHeJ_G0015302.1 mouse_genomes_project 4 32474835 32476722 - Platr9 processed_transcript processed_transcript MGP_C3HHeJ_T0007923.1 MGP_C3HHeJ_G0006460.1 mouse_genomes_project 4 140979788 140989391 + Gm13028 lincRNA lincRNA MGP_C3HHeJ_T0069521.1 MGP_C3HHeJ_G0028939.1 mouse_genomes_project 4 158227608 158229453 - Pusl1 protein_coding processed_transcript MGP_C3HHeJ_T0069523.1 MGP_C3HHeJ_G0028939.1 mouse_genomes_project 4 158228591 158231715 - MGP_C3HHeJ_P0069523 Pusl1 protein_coding protein_coding MGP_C3HHeJ_T0069524.1 MGP_C3HHeJ_G0028939.1 mouse_genomes_project 4 158230319 158231143 - Pusl1 protein_coding retained_intron MGP_C3HHeJ_T0069525.1 MGP_C3HHeJ_G0028939.1 mouse_genomes_project 4 158230430 158231660 - Pusl1 protein_coding retained_intron MGP_C3HHeJ_T0069526.1 MGP_C3HHeJ_G0028939.1 mouse_genomes_project 4 158230714 158231689 - Pusl1 protein_coding retained_intron MGP_C3HHeJ_T0069527.1 MGP_C3HHeJ_G0028939.1 mouse_genomes_project 4 158230775 158231703 - Pusl1 protein_coding processed_transcript MGP_C3HHeJ_T0069528.1 MGP_C3HHeJ_G0028939.1 mouse_genomes_project 4 158230985 158231662 - Pusl1 protein_coding retained_intron MGP_C3HHeJ_T0014638.1 MGP_C3HHeJ_G0012742.1 mouse_genomes_project 4 144493911 144495256 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068122.1 MGP_C3HHeJ_G0028613.1 mouse_genomes_project 4 134812718 134823094 - MGP_C3HHeJ_P0068122 Cnksr1 protein_coding protein_coding MGP_C3HHeJ_T0068123.1 MGP_C3HHeJ_G0028613.1 mouse_genomes_project 4 134812726 134823034 - Cnksr1 protein_coding processed_transcript MGP_C3HHeJ_T0068124.1 MGP_C3HHeJ_G0028613.1 mouse_genomes_project 4 134814044 134815119 - Cnksr1 protein_coding processed_transcript MGP_C3HHeJ_T0068125.1 MGP_C3HHeJ_G0028613.1 mouse_genomes_project 4 134815108 134817856 - Cnksr1 protein_coding processed_transcript MGP_C3HHeJ_T0068126.1 MGP_C3HHeJ_G0028613.1 mouse_genomes_project 4 134817167 134820644 - Cnksr1 protein_coding processed_transcript MGP_C3HHeJ_T0066879.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117432871 117437267 - MGP_C3HHeJ_P0066879 Urod protein_coding protein_coding MGP_C3HHeJ_T0066880.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117433070 117434519 - Urod protein_coding retained_intron MGP_C3HHeJ_T0066881.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117433138 117434740 - Urod protein_coding retained_intron MGP_C3HHeJ_T0066882.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117433929 117437218 - Urod protein_coding retained_intron MGP_C3HHeJ_T0066883.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117434314 117437211 - MGP_C3HHeJ_P0066883 Urod protein_coding protein_coding MGP_C3HHeJ_T0066884.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117435137 117437200 - Urod protein_coding retained_intron MGP_C3HHeJ_T0066885.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117435637 117437199 - Urod protein_coding retained_intron MGP_C3HHeJ_T0066886.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117435806 117436451 - Urod protein_coding processed_transcript MGP_C3HHeJ_T0066887.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117435961 117437194 - Urod protein_coding retained_intron MGP_C3HHeJ_T0066888.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117436133 117437234 - Urod protein_coding retained_intron MGP_C3HHeJ_T0064446.1 MGP_C3HHeJ_G0027781.1 mouse_genomes_project 4 16625361 16670769 + MGP_C3HHeJ_P0064446 Gm12353 protein_coding protein_coding MGP_C3HHeJ_T0067276.1 MGP_C3HHeJ_G0028434.1 mouse_genomes_project 4 123110350 123125118 + MGP_C3HHeJ_P0067276 Nt5c1a protein_coding protein_coding MGP_C3HHeJ_T0066855.1 MGP_C3HHeJ_G0028330.1 mouse_genomes_project 4 117127554 117229020 + MGP_C3HHeJ_P0066855 Tesk2 protein_coding protein_coding MGP_C3HHeJ_T0066859.1 MGP_C3HHeJ_G0028330.1 mouse_genomes_project 4 117140219 117231665 + MGP_C3HHeJ_P0066859 Tesk2 protein_coding protein_coding MGP_C3HHeJ_T0066860.1 MGP_C3HHeJ_G0028330.1 mouse_genomes_project 4 117161082 117229811 + MGP_C3HHeJ_P0066860 Tesk2 protein_coding protein_coding MGP_C3HHeJ_T0066861.1 MGP_C3HHeJ_G0028330.1 mouse_genomes_project 4 117193147 117227971 + Tesk2 protein_coding processed_transcript MGP_C3HHeJ_T0007820.1 MGP_C3HHeJ_G0006390.1 mouse_genomes_project 4 101202861 101203844 + Gm12801 lincRNA lincRNA MGP_C3HHeJ_T0017889.1 MGP_C3HHeJ_G0015347.1 mouse_genomes_project 4 157714587 157741918 - 5830444B04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017890.1 MGP_C3HHeJ_G0015347.1 mouse_genomes_project 4 157727202 157735327 - 5830444B04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017891.1 MGP_C3HHeJ_G0015347.1 mouse_genomes_project 4 157727203 157741909 - 5830444B04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017892.1 MGP_C3HHeJ_G0015347.1 mouse_genomes_project 4 157728411 157735306 - 5830444B04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0065775.1 MGP_C3HHeJ_G0028095.1 mouse_genomes_project 4 82164660 82226422 - MGP_C3HHeJ_P0065775 Zdhhc21 protein_coding protein_coding MGP_C3HHeJ_T0065776.1 MGP_C3HHeJ_G0028095.1 mouse_genomes_project 4 82169969 82226310 - MGP_C3HHeJ_P0065776 Zdhhc21 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065777.1 MGP_C3HHeJ_G0028095.1 mouse_genomes_project 4 82172131 82226707 - MGP_C3HHeJ_P0065777 Zdhhc21 protein_coding protein_coding MGP_C3HHeJ_T0065778.1 MGP_C3HHeJ_G0028095.1 mouse_genomes_project 4 82204687 82216871 - MGP_C3HHeJ_P0065778 Zdhhc21 protein_coding protein_coding MGP_C3HHeJ_T0065779.1 MGP_C3HHeJ_G0028095.1 mouse_genomes_project 4 82206743 82226303 - Zdhhc21 protein_coding retained_intron MGP_C3HHeJ_T0065780.1 MGP_C3HHeJ_G0028095.1 mouse_genomes_project 4 82213673 82226322 - MGP_C3HHeJ_P0065780 Zdhhc21 protein_coding protein_coding MGP_C3HHeJ_T0067637.1 MGP_C3HHeJ_G0028516.1 mouse_genomes_project 4 129565843 129586114 + MGP_C3HHeJ_P0067637 Zbtb8os protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067638.1 MGP_C3HHeJ_G0028516.1 mouse_genomes_project 4 129566155 129576865 + MGP_C3HHeJ_P0067638 Zbtb8os protein_coding protein_coding MGP_C3HHeJ_T0067639.1 MGP_C3HHeJ_G0028516.1 mouse_genomes_project 4 129566195 129577008 + MGP_C3HHeJ_P0067639 Zbtb8os protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067640.1 MGP_C3HHeJ_G0028516.1 mouse_genomes_project 4 129574082 129576905 + Zbtb8os protein_coding retained_intron MGP_C3HHeJ_T0064353.1 MGP_C3HHeJ_G0027752.1 mouse_genomes_project 4 8283692 8351018 + MGP_C3HHeJ_P0064353 1110037F02Rik protein_coding protein_coding MGP_C3HHeJ_T0064354.1 MGP_C3HHeJ_G0027752.1 mouse_genomes_project 4 8283692 8326488 + MGP_C3HHeJ_P0064354 1110037F02Rik protein_coding protein_coding MGP_C3HHeJ_T0064355.1 MGP_C3HHeJ_G0027752.1 mouse_genomes_project 4 8283777 8351018 + MGP_C3HHeJ_P0064355 1110037F02Rik protein_coding protein_coding MGP_C3HHeJ_T0014514.1 MGP_C3HHeJ_G0012618.1 mouse_genomes_project 4 103110216 103110432 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068946.1 MGP_C3HHeJ_G0028835.1 mouse_genomes_project 4 151115937 151136814 + MGP_C3HHeJ_P0068946 Dffa protein_coding protein_coding MGP_C3HHeJ_T0068947.1 MGP_C3HHeJ_G0028835.1 mouse_genomes_project 4 151115937 151133475 + MGP_C3HHeJ_P0068947 Dffa protein_coding protein_coding MGP_C3HHeJ_T0068948.1 MGP_C3HHeJ_G0028835.1 mouse_genomes_project 4 151119551 151120017 + Dffa protein_coding processed_transcript MGP_C3HHeJ_T0014257.1 MGP_C3HHeJ_G0012361.1 mouse_genomes_project 4 12365957 12366382 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068744.1 MGP_C3HHeJ_G0028763.1 mouse_genomes_project 4 144344957 144455250 - MGP_C3HHeJ_P0068744 Prdm2 protein_coding protein_coding MGP_C3HHeJ_T0068745.1 MGP_C3HHeJ_G0028763.1 mouse_genomes_project 4 144399591 144436391 - MGP_C3HHeJ_P0068745 Prdm2 protein_coding protein_coding MGP_C3HHeJ_T0068746.1 MGP_C3HHeJ_G0028763.1 mouse_genomes_project 4 144399615 144455254 - MGP_C3HHeJ_P0068746 Prdm2 protein_coding protein_coding MGP_C3HHeJ_T0068747.1 MGP_C3HHeJ_G0028763.1 mouse_genomes_project 4 144420160 144455540 - Prdm2 protein_coding processed_transcript MGP_C3HHeJ_T0066619.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111927911 112039255 + MGP_C3HHeJ_P0066619 Spata6 protein_coding protein_coding MGP_C3HHeJ_T0066620.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111927936 111976487 + MGP_C3HHeJ_P0066620 Spata6 protein_coding protein_coding MGP_C3HHeJ_T0066621.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111927937 112018743 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066622.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111927965 111987991 + MGP_C3HHeJ_P0066622 Spata6 protein_coding protein_coding MGP_C3HHeJ_T0066623.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111927986 111976547 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066624.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111927990 111988711 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066625.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111928030 111989297 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066626.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111928056 111988761 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066627.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111928132 112039297 + MGP_C3HHeJ_P0066627 Spata6 protein_coding protein_coding MGP_C3HHeJ_T0066628.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111984499 112038307 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066629.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111987261 112039247 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066630.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111987300 111989972 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066631.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 112017632 112032884 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066632.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 112032345 112038315 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066261.1 MGP_C3HHeJ_G0028208.1 mouse_genomes_project 4 104893864 104895605 + MGP_C3HHeJ_P0066261 Gm17662 protein_coding protein_coding MGP_C3HHeJ_T0067227.1 MGP_C3HHeJ_G0028417.1 mouse_genomes_project 4 121631977 121648674 + MGP_C3HHeJ_P0067227 Col9a2 protein_coding protein_coding MGP_C3HHeJ_T0067228.1 MGP_C3HHeJ_G0028417.1 mouse_genomes_project 4 121632340 121637720 + Col9a2 protein_coding retained_intron MGP_C3HHeJ_T0067229.1 MGP_C3HHeJ_G0028417.1 mouse_genomes_project 4 121646350 121648171 + Col9a2 protein_coding processed_transcript MGP_C3HHeJ_T0064836.1 MGP_C3HHeJ_G0027877.1 mouse_genomes_project 4 39747650 39749152 - MGP_C3HHeJ_P0064836 Rpp25l protein_coding protein_coding MGP_C3HHeJ_T0066633.1 MGP_C3HHeJ_G0028276.1 mouse_genomes_project 4 112083569 112110939 - MGP_C3HHeJ_P0066633 Slc5a9 protein_coding protein_coding MGP_C3HHeJ_T0066634.1 MGP_C3HHeJ_G0028276.1 mouse_genomes_project 4 112083623 112092410 - Slc5a9 protein_coding processed_transcript MGP_C3HHeJ_T0066635.1 MGP_C3HHeJ_G0028276.1 mouse_genomes_project 4 112084467 112106782 - MGP_C3HHeJ_P0066635 Slc5a9 protein_coding protein_coding MGP_C3HHeJ_T0066636.1 MGP_C3HHeJ_G0028276.1 mouse_genomes_project 4 112085439 112110775 - MGP_C3HHeJ_P0066636 Slc5a9 protein_coding protein_coding MGP_C3HHeJ_T0066637.1 MGP_C3HHeJ_G0028276.1 mouse_genomes_project 4 112085684 112088833 - Slc5a9 protein_coding processed_transcript MGP_C3HHeJ_T0066638.1 MGP_C3HHeJ_G0028276.1 mouse_genomes_project 4 112098259 112104381 - MGP_C3HHeJ_P0066638 Slc5a9 protein_coding protein_coding MGP_C3HHeJ_T0066639.1 MGP_C3HHeJ_G0028276.1 mouse_genomes_project 4 112098588 112100088 - Slc5a9 protein_coding processed_transcript MGP_C3HHeJ_T0066640.1 MGP_C3HHeJ_G0028276.1 mouse_genomes_project 4 112098627 112099353 - Slc5a9 protein_coding processed_transcript MGP_C3HHeJ_T0064599.1 MGP_C3HHeJ_G0027817.1 mouse_genomes_project 4 30607066 30638955 + MGP_C3HHeJ_P0064599 Gabrr1 protein_coding protein_coding MGP_C3HHeJ_T0014433.1 MGP_C3HHeJ_G0012537.1 mouse_genomes_project 4 72603985 72604848 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004415.1 MGP_C3HHeJ_G0003836.1 mouse_genomes_project 4 100447720 100452275 - Ube2uos antisense antisense MGP_C3HHeJ_T0064268.1 MGP_C3HHeJ_G0027738.1 mouse_genomes_project 4 4824249 4922210 - MGP_C3HHeJ_P0064268 Car8 protein_coding protein_coding MGP_C3HHeJ_T0017826.1 MGP_C3HHeJ_G0015309.1 mouse_genomes_project 4 51752043 51764285 - 4930412L05Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017827.1 MGP_C3HHeJ_G0015309.1 mouse_genomes_project 4 51761487 51764581 - 4930412L05Rik processed_transcript processed_transcript MGP_C3HHeJ_T0014654.1 MGP_C3HHeJ_G0012758.1 mouse_genomes_project 4 151844357 151844498 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014248.1 MGP_C3HHeJ_G0012352.1 mouse_genomes_project 4 8954822 8955097 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068877.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150095888 150105819 - MGP_C3HHeJ_P0068877 Fbxo44 protein_coding protein_coding MGP_C3HHeJ_T0068878.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150095891 150106308 - MGP_C3HHeJ_P0068878 Fbxo44 protein_coding protein_coding MGP_C3HHeJ_T0068879.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150095891 150106319 - MGP_C3HHeJ_P0068879 Fbxo44 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068880.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150096355 150106101 - MGP_C3HHeJ_P0068880 Fbxo44 protein_coding protein_coding MGP_C3HHeJ_T0068881.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150096625 150103300 - MGP_C3HHeJ_P0068881 Fbxo44 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068882.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150096660 150106099 - MGP_C3HHeJ_P0068882 Fbxo44 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068883.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150096660 150105874 - MGP_C3HHeJ_P0068883 Fbxo44 protein_coding protein_coding MGP_C3HHeJ_T0068884.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150098600 150106075 - MGP_C3HHeJ_P0068884 Fbxo44 protein_coding protein_coding MGP_C3HHeJ_T0068885.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150099250 150106073 - MGP_C3HHeJ_P0068885 Fbxo44 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068886.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150099270 150106707 - MGP_C3HHeJ_P0068886 Fbxo44 protein_coding protein_coding MGP_C3HHeJ_T0064804.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39698992 39699795 - protein_coding processed_transcript MGP_C3HHeJ_T0064805.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39698992 39707959 - protein_coding processed_transcript MGP_C3HHeJ_T0064806.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39698992 39708523 - protein_coding processed_transcript MGP_C3HHeJ_T0064807.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39698992 39708023 - protein_coding processed_transcript MGP_C3HHeJ_T0064808.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39698992 39708520 - MGP_C3HHeJ_P0064808 protein_coding protein_coding MGP_C3HHeJ_T0064809.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39698992 39708564 - MGP_C3HHeJ_P0064809 protein_coding protein_coding MGP_C3HHeJ_T0064810.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39698992 39701074 - MGP_C3HHeJ_P0064810 protein_coding protein_coding MGP_C3HHeJ_T0064811.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39698992 39699750 - MGP_C3HHeJ_P0064811 protein_coding protein_coding MGP_C3HHeJ_T0064814.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39699003 39699738 - MGP_C3HHeJ_P0064814 protein_coding protein_coding MGP_C3HHeJ_T0064819.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39699394 39708592 - protein_coding processed_transcript MGP_C3HHeJ_T0064820.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39699428 39708360 - protein_coding processed_transcript MGP_C3HHeJ_T0064825.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39707609 39708669 - protein_coding processed_transcript MGP_C3HHeJ_T0064826.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39707609 39708591 - protein_coding processed_transcript MGP_C3HHeJ_T0064827.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39707609 39708580 - MGP_C3HHeJ_P0064827 protein_coding protein_coding MGP_C3HHeJ_T0064833.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39707836 39708619 - protein_coding processed_transcript MGP_C3HHeJ_T0064834.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39707898 39708651 - protein_coding processed_transcript MGP_C3HHeJ_T0066432.1 MGP_C3HHeJ_G0028241.1 mouse_genomes_project 4 108023974 108044000 - MGP_C3HHeJ_P0066432 Cpt2 protein_coding protein_coding MGP_C3HHeJ_T0066433.1 MGP_C3HHeJ_G0028241.1 mouse_genomes_project 4 108023976 108043950 - MGP_C3HHeJ_P0066433 Cpt2 protein_coding protein_coding MGP_C3HHeJ_T0066434.1 MGP_C3HHeJ_G0028241.1 mouse_genomes_project 4 108027577 108043935 - MGP_C3HHeJ_P0066434 Cpt2 protein_coding protein_coding MGP_C3HHeJ_T0066435.1 MGP_C3HHeJ_G0028241.1 mouse_genomes_project 4 108027664 108033174 - Cpt2 protein_coding retained_intron MGP_C3HHeJ_T0066436.1 MGP_C3HHeJ_G0028241.1 mouse_genomes_project 4 108027811 108043837 - Cpt2 protein_coding processed_transcript MGP_C3HHeJ_T0066437.1 MGP_C3HHeJ_G0028241.1 mouse_genomes_project 4 108028166 108043978 - MGP_C3HHeJ_P0066437 Cpt2 protein_coding protein_coding MGP_C3HHeJ_T0007740.1 MGP_C3HHeJ_G0006322.1 mouse_genomes_project 4 34603652 34638745 + Gm12371 lincRNA lincRNA MGP_C3HHeJ_T0010530.1 MGP_C3HHeJ_G0008663.1 mouse_genomes_project 4 121351024 121351113 - Mir30c-1 miRNA miRNA MGP_C3HHeJ_T0098127.1 MGP_C3HHeJ_G0036339.1 mouse_genomes_project 4 9669480 9669587 + n-R5s182 rRNA rRNA MGP_C3HHeJ_T0014317.1 MGP_C3HHeJ_G0012421.1 mouse_genomes_project 4 26401358 26401537 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001378.1 MGP_C3HHeJ_G0001309.1 mouse_genomes_project 4 46201968 46307031 - TEC TEC MGP_C3HHeJ_T0014610.1 MGP_C3HHeJ_G0012714.1 mouse_genomes_project 4 132668218 132668539 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066222.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103121078 103122593 + Mier1 protein_coding processed_transcript MGP_C3HHeJ_T0066223.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103121119 103137717 + Mier1 protein_coding processed_transcript MGP_C3HHeJ_T0066224.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103121153 103149888 + Mier1 protein_coding processed_transcript MGP_C3HHeJ_T0066225.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103121450 103124991 + MGP_C3HHeJ_P0066225 Mier1 protein_coding protein_coding MGP_C3HHeJ_T0066226.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103121520 103172512 + MGP_C3HHeJ_P0066226 Mier1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0066227.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103121644 103125355 + Mier1 protein_coding processed_transcript MGP_C3HHeJ_T0066228.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103121960 103133993 + MGP_C3HHeJ_P0066228 Mier1 protein_coding protein_coding MGP_C3HHeJ_T0066229.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103122326 103172502 + MGP_C3HHeJ_P0066229 Mier1 protein_coding protein_coding MGP_C3HHeJ_T0066230.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103123983 103125279 + Mier1 protein_coding processed_transcript MGP_C3HHeJ_T0066231.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103125974 103172505 + MGP_C3HHeJ_P0066231 Mier1 protein_coding protein_coding MGP_C3HHeJ_T0066232.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103126078 103149268 + Mier1 protein_coding retained_intron MGP_C3HHeJ_T0066233.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103126098 103151141 + Mier1 protein_coding retained_intron MGP_C3HHeJ_T0066234.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103149751 103169498 + MGP_C3HHeJ_P0066234 Mier1 protein_coding protein_coding MGP_C3HHeJ_T0066235.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103165275 103169567 + Mier1 protein_coding processed_transcript MGP_C3HHeJ_T0068780.1 MGP_C3HHeJ_G0028784.1 mouse_genomes_project 4 145806173 145809390 + MGP_C3HHeJ_P0068780 protein_coding protein_coding MGP_C3HHeJ_T0067290.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283804 123634768 - MGP_C3HHeJ_P0067290 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067291.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283804 123305404 - MGP_C3HHeJ_P0067291 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067292.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283887 123443015 - MGP_C3HHeJ_P0067292 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067293.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283887 123307840 - MGP_C3HHeJ_P0067293 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067294.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283887 123489559 - MGP_C3HHeJ_P0067294 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067295.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283887 123301016 - MGP_C3HHeJ_P0067295 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067296.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283887 123634768 - MGP_C3HHeJ_P0067296 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067297.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283887 123417539 - MGP_C3HHeJ_P0067297 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067298.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283889 123634768 - MGP_C3HHeJ_P0067298 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067299.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283889 123470274 - MGP_C3HHeJ_P0067299 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067300.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283891 123634768 - MGP_C3HHeJ_P0067300 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067301.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123319455 123326861 - MGP_C3HHeJ_P0067301 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067302.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123334488 123344728 - Macf1 protein_coding processed_transcript MGP_C3HHeJ_T0067303.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123395294 123470411 - MGP_C3HHeJ_P0067303 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067304.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123395294 123611894 - MGP_C3HHeJ_P0067304 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067305.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123482769 123510123 - Macf1 protein_coding processed_transcript MGP_C3HHeJ_T0067855.1 MGP_C3HHeJ_G0028556.1 mouse_genomes_project 4 132315810 132317180 + MGP_C3HHeJ_P0067855 Tmem200b protein_coding protein_coding MGP_C3HHeJ_T0010551.1 MGP_C3HHeJ_G0008684.1 mouse_genomes_project 4 136108843 136108922 - Mir700 miRNA miRNA MGP_C3HHeJ_T0068508.1 MGP_C3HHeJ_G0028707.1 mouse_genomes_project 4 140039022 140054676 - MGP_C3HHeJ_P0068508 Htr6 protein_coding protein_coding MGP_C3HHeJ_T0068509.1 MGP_C3HHeJ_G0028707.1 mouse_genomes_project 4 140039323 140053895 - MGP_C3HHeJ_P0068509 Htr6 protein_coding protein_coding MGP_C3HHeJ_T0014422.1 MGP_C3HHeJ_G0012526.1 mouse_genomes_project 4 68913532 68914270 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067092.1 MGP_C3HHeJ_G0028387.1 mouse_genomes_project 4 119704597 119719136 - MGP_C3HHeJ_P0067092 protein_coding protein_coding MGP_C3HHeJ_T0067093.1 MGP_C3HHeJ_G0028387.1 mouse_genomes_project 4 119704731 119719101 - MGP_C3HHeJ_P0067093 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067094.1 MGP_C3HHeJ_G0028387.1 mouse_genomes_project 4 119706712 119719101 - protein_coding retained_intron MGP_C3HHeJ_T0067095.1 MGP_C3HHeJ_G0028387.1 mouse_genomes_project 4 119707720 119719081 - protein_coding processed_transcript MGP_C3HHeJ_T0067096.1 MGP_C3HHeJ_G0028387.1 mouse_genomes_project 4 119714849 119717872 - MGP_C3HHeJ_P0067096 protein_coding protein_coding MGP_C3HHeJ_T0067097.1 MGP_C3HHeJ_G0028387.1 mouse_genomes_project 4 119714910 119719076 - MGP_C3HHeJ_P0067097 protein_coding protein_coding MGP_C3HHeJ_T0067098.1 MGP_C3HHeJ_G0028387.1 mouse_genomes_project 4 119716319 119719121 - MGP_C3HHeJ_P0067098 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067099.1 MGP_C3HHeJ_G0028387.1 mouse_genomes_project 4 119716452 119719118 - MGP_C3HHeJ_P0067099 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067100.1 MGP_C3HHeJ_G0028387.1 mouse_genomes_project 4 119716460 119719136 - MGP_C3HHeJ_P0067100 protein_coding protein_coding MGP_C3HHeJ_T0004508.1 MGP_C3HHeJ_G0003908.1 mouse_genomes_project 4 143370392 143373933 + Gm13062 antisense antisense MGP_C3HHeJ_T0014388.1 MGP_C3HHeJ_G0012492.1 mouse_genomes_project 4 52225613 52226662 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065966.1 MGP_C3HHeJ_G0028142.1 mouse_genomes_project 4 94247487 94308539 - MGP_C3HHeJ_P0065966 Caap1 protein_coding protein_coding MGP_C3HHeJ_T0065967.1 MGP_C3HHeJ_G0028142.1 mouse_genomes_project 4 94298325 94308509 - Caap1 protein_coding processed_transcript MGP_C3HHeJ_T0064876.1 MGP_C3HHeJ_G0027891.1 mouse_genomes_project 4 41080678 41101691 + Phf24 protein_coding processed_transcript MGP_C3HHeJ_T0064877.1 MGP_C3HHeJ_G0027891.1 mouse_genomes_project 4 41080699 41097674 + MGP_C3HHeJ_P0064877 Phf24 protein_coding protein_coding MGP_C3HHeJ_T0064878.1 MGP_C3HHeJ_G0027891.1 mouse_genomes_project 4 41080712 41108543 + MGP_C3HHeJ_P0064878 Phf24 protein_coding protein_coding MGP_C3HHeJ_T0064879.1 MGP_C3HHeJ_G0027891.1 mouse_genomes_project 4 41081269 41108543 + MGP_C3HHeJ_P0064879 Phf24 protein_coding protein_coding MGP_C3HHeJ_T0064880.1 MGP_C3HHeJ_G0027891.1 mouse_genomes_project 4 41081288 41108543 + MGP_C3HHeJ_P0064880 Phf24 protein_coding protein_coding MGP_C3HHeJ_T0064881.1 MGP_C3HHeJ_G0027891.1 mouse_genomes_project 4 41081352 41104148 + MGP_C3HHeJ_P0064881 Phf24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064882.1 MGP_C3HHeJ_G0027891.1 mouse_genomes_project 4 41086255 41097640 + MGP_C3HHeJ_P0064882 Phf24 protein_coding protein_coding MGP_C3HHeJ_T0064883.1 MGP_C3HHeJ_G0027891.1 mouse_genomes_project 4 41097761 41103304 + MGP_C3HHeJ_P0064883 Phf24 protein_coding protein_coding MGP_C3HHeJ_T0064884.1 MGP_C3HHeJ_G0027891.1 mouse_genomes_project 4 41102044 41103624 + MGP_C3HHeJ_P0064884 Phf24 protein_coding protein_coding MGP_C3HHeJ_T0099377.1 MGP_C3HHeJ_G0037571.1 mouse_genomes_project 4 115103571 115103704 - Gm23230 snRNA snRNA MGP_C3HHeJ_T0011467.1 MGP_C3HHeJ_G0009600.1 mouse_genomes_project 4 44428734 44429001 + Gm23250 misc_RNA misc_RNA MGP_C3HHeJ_T0014637.1 MGP_C3HHeJ_G0012741.1 mouse_genomes_project 4 144406693 144408222 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067358.1 MGP_C3HHeJ_G0028453.1 mouse_genomes_project 4 124865549 124872474 - MGP_C3HHeJ_P0067358 Maneal protein_coding protein_coding MGP_C3HHeJ_T0066833.1 MGP_C3HHeJ_G0028326.1 mouse_genomes_project 4 117048580 117063644 - MGP_C3HHeJ_P0066833 Akr1a1 protein_coding protein_coding MGP_C3HHeJ_T0066834.1 MGP_C3HHeJ_G0028326.1 mouse_genomes_project 4 117048581 117063360 - Akr1a1 protein_coding processed_transcript MGP_C3HHeJ_T0066835.1 MGP_C3HHeJ_G0028326.1 mouse_genomes_project 4 117048581 117050073 - Akr1a1 protein_coding processed_transcript MGP_C3HHeJ_T0066836.1 MGP_C3HHeJ_G0028326.1 mouse_genomes_project 4 117051164 117061438 - MGP_C3HHeJ_P0066836 Akr1a1 protein_coding protein_coding MGP_C3HHeJ_T0014536.1 MGP_C3HHeJ_G0012640.1 mouse_genomes_project 4 109571569 109572728 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069274.1 MGP_C3HHeJ_G0028893.1 mouse_genomes_project 4 156327426 156373482 - MGP_C3HHeJ_P0069274 Trp73 protein_coding protein_coding MGP_C3HHeJ_T0069275.1 MGP_C3HHeJ_G0028893.1 mouse_genomes_project 4 156329685 156373482 - MGP_C3HHeJ_P0069275 Trp73 protein_coding protein_coding MGP_C3HHeJ_T0069276.1 MGP_C3HHeJ_G0028893.1 mouse_genomes_project 4 156330162 156373476 - MGP_C3HHeJ_P0069276 Trp73 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069277.1 MGP_C3HHeJ_G0028893.1 mouse_genomes_project 4 156330164 156381925 - MGP_C3HHeJ_P0069277 Trp73 protein_coding protein_coding MGP_C3HHeJ_T0069278.1 MGP_C3HHeJ_G0028893.1 mouse_genomes_project 4 156335368 156361632 - MGP_C3HHeJ_P0069278 Trp73 protein_coding protein_coding MGP_C3HHeJ_T0069279.1 MGP_C3HHeJ_G0028893.1 mouse_genomes_project 4 156338616 156392916 - MGP_C3HHeJ_P0069279 Trp73 protein_coding protein_coding MGP_C3HHeJ_T0004456.1 MGP_C3HHeJ_G0003868.1 mouse_genomes_project 4 123875973 123887909 - Gm12905 antisense antisense MGP_C3HHeJ_T0004457.1 MGP_C3HHeJ_G0003868.1 mouse_genomes_project 4 123876141 123876420 - Gm12905 antisense antisense MGP_C3HHeJ_T0065395.1 MGP_C3HHeJ_G0027998.1 mouse_genomes_project 4 51556380 51566886 + MGP_C3HHeJ_P0065395 Nipsnap3b protein_coding protein_coding MGP_C3HHeJ_T0065396.1 MGP_C3HHeJ_G0027998.1 mouse_genomes_project 4 51556450 51566402 + MGP_C3HHeJ_P0065396 Nipsnap3b protein_coding protein_coding MGP_C3HHeJ_T0065397.1 MGP_C3HHeJ_G0027998.1 mouse_genomes_project 4 51565801 51566331 + Nipsnap3b protein_coding processed_transcript MGP_C3HHeJ_T0100609.1 MGP_C3HHeJ_G0038803.1 mouse_genomes_project 4 22647291 22647416 - Gm25975 snoRNA snoRNA MGP_C3HHeJ_T0007728.1 MGP_C3HHeJ_G0006310.1 mouse_genomes_project 4 17059394 17069272 - 4930598A11Rik lincRNA lincRNA MGP_C3HHeJ_T0004458.1 MGP_C3HHeJ_G0003869.1 mouse_genomes_project 4 124521252 124657681 - Gm27247 antisense antisense MGP_C3HHeJ_T0011491.1 MGP_C3HHeJ_G0009624.1 mouse_genomes_project 4 154392298 154392634 - Gm27500 misc_RNA misc_RNA MGP_C3HHeJ_T0014352.1 MGP_C3HHeJ_G0012456.1 mouse_genomes_project 4 37800556 37801511 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068803.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146493843 146721517 - MGP_C3HHeJ_P0068803 Vps13d protein_coding protein_coding MGP_C3HHeJ_T0068804.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146493848 146717173 - MGP_C3HHeJ_P0068804 Vps13d protein_coding protein_coding MGP_C3HHeJ_T0068805.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146493848 146614240 - MGP_C3HHeJ_P0068805 Vps13d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068806.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146495822 146680543 - MGP_C3HHeJ_P0068806 Vps13d protein_coding protein_coding MGP_C3HHeJ_T0068807.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146496152 146505914 - Vps13d protein_coding processed_transcript MGP_C3HHeJ_T0068808.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146501533 146576394 - Vps13d protein_coding retained_intron MGP_C3HHeJ_T0068809.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146538913 146573283 - Vps13d protein_coding processed_transcript MGP_C3HHeJ_T0068810.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146575230 146580490 - Vps13d protein_coding retained_intron MGP_C3HHeJ_T0068811.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146592255 146594896 - Vps13d protein_coding retained_intron MGP_C3HHeJ_T0068812.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146702201 146721507 - Vps13d protein_coding retained_intron MGP_C3HHeJ_T0067049.1 MGP_C3HHeJ_G0028365.1 mouse_genomes_project 4 118947653 118962688 - MGP_C3HHeJ_P0067049 Mpl protein_coding protein_coding MGP_C3HHeJ_T0067050.1 MGP_C3HHeJ_G0028365.1 mouse_genomes_project 4 118947655 118962670 - MGP_C3HHeJ_P0067050 Mpl protein_coding protein_coding MGP_C3HHeJ_T0067051.1 MGP_C3HHeJ_G0028365.1 mouse_genomes_project 4 118948510 118962632 - MGP_C3HHeJ_P0067051 Mpl protein_coding protein_coding MGP_C3HHeJ_T0067052.1 MGP_C3HHeJ_G0028365.1 mouse_genomes_project 4 118948667 118962625 - MGP_C3HHeJ_P0067052 Mpl protein_coding protein_coding MGP_C3HHeJ_T0004472.1 MGP_C3HHeJ_G0003880.1 mouse_genomes_project 4 131154838 131156758 - Gm26716 antisense antisense MGP_C3HHeJ_T0069362.1 MGP_C3HHeJ_G0028909.1 mouse_genomes_project 4 157372984 157386539 - Rer1 protein_coding processed_transcript MGP_C3HHeJ_T0069363.1 MGP_C3HHeJ_G0028909.1 mouse_genomes_project 4 157373813 157383308 - MGP_C3HHeJ_P0069363 Rer1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069364.1 MGP_C3HHeJ_G0028909.1 mouse_genomes_project 4 157382852 157386550 - Rer1 protein_coding processed_transcript MGP_C3HHeJ_T0065344.1 MGP_C3HHeJ_G0027979.1 mouse_genomes_project 4 47829417 47916800 - MGP_C3HHeJ_P0065344 protein_coding protein_coding MGP_C3HHeJ_T0065346.1 MGP_C3HHeJ_G0027979.1 mouse_genomes_project 4 47915057 47916800 - protein_coding processed_transcript MGP_C3HHeJ_T0007898.1 MGP_C3HHeJ_G0006444.1 mouse_genomes_project 4 132692513 132695354 + Gm28874 lincRNA lincRNA MGP_C3HHeJ_T0067079.1 MGP_C3HHeJ_G0028381.1 mouse_genomes_project 4 119431760 119432702 - MGP_C3HHeJ_P0067079 Olfr1329 protein_coding protein_coding MGP_C3HHeJ_T0068862.1 MGP_C3HHeJ_G0028819.1 mouse_genomes_project 4 150038528 150072862 - MGP_C3HHeJ_P0068862 Draxin protein_coding protein_coding MGP_C3HHeJ_T0069459.1 MGP_C3HHeJ_G0028925.1 mouse_genomes_project 4 158036472 158066563 + MGP_C3HHeJ_P0069459 Ssu72 protein_coding protein_coding MGP_C3HHeJ_T0069460.1 MGP_C3HHeJ_G0028925.1 mouse_genomes_project 4 158036796 158048911 + Ssu72 protein_coding retained_intron MGP_C3HHeJ_T0069461.1 MGP_C3HHeJ_G0028925.1 mouse_genomes_project 4 158036807 158064880 + MGP_C3HHeJ_P0069461 Ssu72 protein_coding protein_coding MGP_C3HHeJ_T0066481.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108612192 108716675 + MGP_C3HHeJ_P0066481 Zcchc11 protein_coding protein_coding MGP_C3HHeJ_T0066482.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108612192 108632145 + MGP_C3HHeJ_P0066482 Zcchc11 protein_coding protein_coding MGP_C3HHeJ_T0066483.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108612776 108716681 + MGP_C3HHeJ_P0066483 Zcchc11 protein_coding protein_coding MGP_C3HHeJ_T0066484.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108632072 108679961 + MGP_C3HHeJ_P0066484 Zcchc11 protein_coding protein_coding MGP_C3HHeJ_T0066485.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108682124 108685969 + Zcchc11 protein_coding processed_transcript MGP_C3HHeJ_T0066486.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108699867 108705888 + Zcchc11 protein_coding processed_transcript MGP_C3HHeJ_T0066487.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108699966 108700834 + Zcchc11 protein_coding processed_transcript MGP_C3HHeJ_T0066488.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108700019 108700827 + Zcchc11 protein_coding processed_transcript MGP_C3HHeJ_T0066489.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108706686 108712677 + Zcchc11 protein_coding processed_transcript MGP_C3HHeJ_T0066490.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108712693 108716675 + Zcchc11 protein_coding processed_transcript MGP_C3HHeJ_T0066491.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108712977 108716314 + MGP_C3HHeJ_P0066491 Zcchc11 protein_coding protein_coding MGP_C3HHeJ_T0014410.1 MGP_C3HHeJ_G0012514.1 mouse_genomes_project 4 61603440 61621231 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004516.1 MGP_C3HHeJ_G0003915.1 mouse_genomes_project 4 150959285 150966943 + Gm17029 antisense antisense MGP_C3HHeJ_T0004517.1 MGP_C3HHeJ_G0003915.1 mouse_genomes_project 4 150959314 150984287 + Gm17029 antisense antisense MGP_C3HHeJ_T0004518.1 MGP_C3HHeJ_G0003915.1 mouse_genomes_project 4 150959348 150965979 + Gm17029 antisense antisense MGP_C3HHeJ_T0069284.1 MGP_C3HHeJ_G0028895.1 mouse_genomes_project 4 156437641 156440823 - MGP_C3HHeJ_P0069284 Tprgl protein_coding protein_coding MGP_C3HHeJ_T0069285.1 MGP_C3HHeJ_G0028895.1 mouse_genomes_project 4 156438296 156440823 - Tprgl protein_coding processed_transcript MGP_C3HHeJ_T0069286.1 MGP_C3HHeJ_G0028895.1 mouse_genomes_project 4 156438512 156440789 - MGP_C3HHeJ_P0069286 Tprgl protein_coding protein_coding MGP_C3HHeJ_T0069287.1 MGP_C3HHeJ_G0028895.1 mouse_genomes_project 4 156438629 156440323 - Tprgl protein_coding processed_transcript MGP_C3HHeJ_T0069288.1 MGP_C3HHeJ_G0028895.1 mouse_genomes_project 4 156439723 156440763 - Tprgl protein_coding processed_transcript MGP_C3HHeJ_T0067778.1 MGP_C3HHeJ_G0028541.1 mouse_genomes_project 4 130462456 130475432 - MGP_C3HHeJ_P0067778 Tinagl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067779.1 MGP_C3HHeJ_G0028541.1 mouse_genomes_project 4 130463604 130475432 - MGP_C3HHeJ_P0067779 Tinagl1 protein_coding protein_coding MGP_C3HHeJ_T0067780.1 MGP_C3HHeJ_G0028541.1 mouse_genomes_project 4 130463606 130464614 - Tinagl1 protein_coding retained_intron MGP_C3HHeJ_T0067781.1 MGP_C3HHeJ_G0028541.1 mouse_genomes_project 4 130463606 130475422 - MGP_C3HHeJ_P0067781 Tinagl1 protein_coding protein_coding MGP_C3HHeJ_T0067782.1 MGP_C3HHeJ_G0028541.1 mouse_genomes_project 4 130463721 130475752 - MGP_C3HHeJ_P0067782 Tinagl1 protein_coding protein_coding MGP_C3HHeJ_T0067783.1 MGP_C3HHeJ_G0028541.1 mouse_genomes_project 4 130464979 130468952 - Tinagl1 protein_coding retained_intron MGP_C3HHeJ_T0067784.1 MGP_C3HHeJ_G0028541.1 mouse_genomes_project 4 130468580 130475321 - MGP_C3HHeJ_P0067784 Tinagl1 protein_coding protein_coding MGP_C3HHeJ_T0067785.1 MGP_C3HHeJ_G0028541.1 mouse_genomes_project 4 130472036 130475422 - Tinagl1 protein_coding processed_transcript MGP_C3HHeJ_T0067786.1 MGP_C3HHeJ_G0028541.1 mouse_genomes_project 4 130474339 130475450 - Tinagl1 protein_coding retained_intron MGP_C3HHeJ_T0014473.1 MGP_C3HHeJ_G0012577.1 mouse_genomes_project 4 88850325 88850818 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014531.1 MGP_C3HHeJ_G0012635.1 mouse_genomes_project 4 108462292 108462600 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066359.1 MGP_C3HHeJ_G0028230.1 mouse_genomes_project 4 107314212 107324161 + MGP_C3HHeJ_P0066359 Ldlrad1 protein_coding protein_coding MGP_C3HHeJ_T0069400.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157728083 157736537 + protein_coding retained_intron MGP_C3HHeJ_T0069401.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157728151 157767083 + protein_coding processed_transcript MGP_C3HHeJ_T0069402.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157728151 157742011 + MGP_C3HHeJ_P0069402 protein_coding protein_coding MGP_C3HHeJ_T0069403.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157728151 157791852 + MGP_C3HHeJ_P0069403 protein_coding protein_coding MGP_C3HHeJ_T0069404.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157741963 157772606 + protein_coding retained_intron MGP_C3HHeJ_T0069405.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157742306 157791434 + MGP_C3HHeJ_P0069405 protein_coding protein_coding MGP_C3HHeJ_T0069406.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157751290 157772439 + protein_coding processed_transcript MGP_C3HHeJ_T0069407.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157776632 157791434 + protein_coding retained_intron MGP_C3HHeJ_T0069408.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157786918 157791559 + protein_coding retained_intron MGP_C3HHeJ_T0069409.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157786965 157791509 + protein_coding retained_intron MGP_C3HHeJ_T0007919.1 MGP_C3HHeJ_G0006456.1 mouse_genomes_project 4 138205029 138206146 - 2810405F17Rik lincRNA lincRNA MGP_C3HHeJ_T0066976.1 MGP_C3HHeJ_G0028353.1 mouse_genomes_project 4 118368325 118382292 - MGP_C3HHeJ_P0066976 B4galt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066982.1 MGP_C3HHeJ_G0028353.1 mouse_genomes_project 4 118372151 118382613 - MGP_C3HHeJ_P0066982 B4galt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066983.1 MGP_C3HHeJ_G0028353.1 mouse_genomes_project 4 118372261 118382624 - MGP_C3HHeJ_P0066983 B4galt2 protein_coding protein_coding MGP_C3HHeJ_T0066984.1 MGP_C3HHeJ_G0028353.1 mouse_genomes_project 4 118372432 118382249 - MGP_C3HHeJ_P0066984 B4galt2 protein_coding protein_coding MGP_C3HHeJ_T0066986.1 MGP_C3HHeJ_G0028353.1 mouse_genomes_project 4 118376694 118382292 - MGP_C3HHeJ_P0066986 B4galt2 protein_coding protein_coding MGP_C3HHeJ_T0066987.1 MGP_C3HHeJ_G0028353.1 mouse_genomes_project 4 118380155 118382356 - B4galt2 protein_coding processed_transcript MGP_C3HHeJ_T0066988.1 MGP_C3HHeJ_G0028353.1 mouse_genomes_project 4 118380529 118381428 - MGP_C3HHeJ_P0066988 B4galt2 protein_coding protein_coding MGP_C3HHeJ_T0004418.1 MGP_C3HHeJ_G0003839.1 mouse_genomes_project 4 106624181 106627431 - 2700068H02Rik antisense antisense MGP_C3HHeJ_T0014279.1 MGP_C3HHeJ_G0012383.1 mouse_genomes_project 4 16302310 16303162 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098479.1 MGP_C3HHeJ_G0036684.1 mouse_genomes_project 4 154395294 154395604 + sense_intronic sense_intronic MGP_C3HHeJ_T0011726.1 MGP_C3HHeJ_G0009843.1 mouse_genomes_project 4 139792913 139796234 + MGP_C3HHeJ_P0011726 Pla2g2a polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0011727.1 MGP_C3HHeJ_G0009843.1 mouse_genomes_project 4 139792916 139796237 + MGP_C3HHeJ_P0011727 Pla2g2a polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0011728.1 MGP_C3HHeJ_G0009843.1 mouse_genomes_project 4 139792932 139794925 + Pla2g2a polymorphic_pseudogene processed_transcript MGP_C3HHeJ_T0011729.1 MGP_C3HHeJ_G0009843.1 mouse_genomes_project 4 139794314 139796237 + Pla2g2a polymorphic_pseudogene retained_intron MGP_C3HHeJ_T0068893.1 MGP_C3HHeJ_G0028826.1 mouse_genomes_project 4 150414963 150421340 + Mtor protein_coding retained_intron MGP_C3HHeJ_T0068894.1 MGP_C3HHeJ_G0028826.1 mouse_genomes_project 4 150414963 150528095 + MGP_C3HHeJ_P0068894 Mtor protein_coding protein_coding MGP_C3HHeJ_T0068895.1 MGP_C3HHeJ_G0028826.1 mouse_genomes_project 4 150414977 150421344 + MGP_C3HHeJ_P0068895 Mtor protein_coding protein_coding MGP_C3HHeJ_T0068897.1 MGP_C3HHeJ_G0028826.1 mouse_genomes_project 4 150513621 150518082 + Mtor protein_coding retained_intron MGP_C3HHeJ_T0014523.1 MGP_C3HHeJ_G0012627.1 mouse_genomes_project 4 106195134 106196802 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099337.1 MGP_C3HHeJ_G0037531.1 mouse_genomes_project 4 34398003 34398110 + Gm23314 snRNA snRNA MGP_C3HHeJ_T0014585.1 MGP_C3HHeJ_G0012689.1 mouse_genomes_project 4 123185416 123185989 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067574.1 MGP_C3HHeJ_G0028505.1 mouse_genomes_project 4 129129435 129162470 - MGP_C3HHeJ_P0067574 Azin2 protein_coding protein_coding MGP_C3HHeJ_T0067575.1 MGP_C3HHeJ_G0028505.1 mouse_genomes_project 4 129131224 129162478 - MGP_C3HHeJ_P0067575 Azin2 protein_coding protein_coding MGP_C3HHeJ_T0067576.1 MGP_C3HHeJ_G0028505.1 mouse_genomes_project 4 129131224 129162489 - MGP_C3HHeJ_P0067576 Azin2 protein_coding protein_coding MGP_C3HHeJ_T0067577.1 MGP_C3HHeJ_G0028505.1 mouse_genomes_project 4 129145852 129162489 - Azin2 protein_coding retained_intron MGP_C3HHeJ_T0067578.1 MGP_C3HHeJ_G0028505.1 mouse_genomes_project 4 129146294 129161448 - MGP_C3HHeJ_P0067578 Azin2 protein_coding protein_coding MGP_C3HHeJ_T0067579.1 MGP_C3HHeJ_G0028505.1 mouse_genomes_project 4 129147392 129162492 - Azin2 protein_coding retained_intron MGP_C3HHeJ_T0067580.1 MGP_C3HHeJ_G0028505.1 mouse_genomes_project 4 129160754 129162478 - Azin2 protein_coding retained_intron MGP_C3HHeJ_T0004341.1 MGP_C3HHeJ_G0003781.1 mouse_genomes_project 4 3005413 3012744 - 4930430E12Rik antisense antisense MGP_C3HHeJ_T0004342.1 MGP_C3HHeJ_G0003781.1 mouse_genomes_project 4 3006225 3012744 - 4930430E12Rik antisense antisense MGP_C3HHeJ_T0004498.1 MGP_C3HHeJ_G0003902.1 mouse_genomes_project 4 142773576 142775153 + AI507597 antisense antisense MGP_C3HHeJ_T0004499.1 MGP_C3HHeJ_G0003902.1 mouse_genomes_project 4 142773905 142775153 + AI507597 antisense antisense MGP_C3HHeJ_T0007809.1 MGP_C3HHeJ_G0006380.1 mouse_genomes_project 4 92273422 92294069 + Gm12637 lincRNA lincRNA MGP_C3HHeJ_T0066667.1 MGP_C3HHeJ_G0028287.1 mouse_genomes_project 4 115187736 115188603 - MGP_C3HHeJ_P0066667 Foxe3 protein_coding protein_coding MGP_C3HHeJ_T0014503.1 MGP_C3HHeJ_G0012607.1 mouse_genomes_project 4 99349185 99350184 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067355.1 MGP_C3HHeJ_G0028452.1 mouse_genomes_project 4 124860980 124865553 + MGP_C3HHeJ_P0067355 Yrdc protein_coding protein_coding MGP_C3HHeJ_T0067356.1 MGP_C3HHeJ_G0028452.1 mouse_genomes_project 4 124861127 124865386 + MGP_C3HHeJ_P0067356 Yrdc protein_coding protein_coding MGP_C3HHeJ_T0067357.1 MGP_C3HHeJ_G0028452.1 mouse_genomes_project 4 124862207 124865029 + Yrdc protein_coding retained_intron MGP_C3HHeJ_T0014342.1 MGP_C3HHeJ_G0012446.1 mouse_genomes_project 4 34062638 34063444 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004495.1 MGP_C3HHeJ_G0003900.1 mouse_genomes_project 4 142383610 142388785 - Gm13055 antisense antisense MGP_C3HHeJ_T0066286.1 MGP_C3HHeJ_G0028220.1 mouse_genomes_project 4 106734493 106751221 - MGP_C3HHeJ_P0066286 Ttc4 protein_coding protein_coding MGP_C3HHeJ_T0066287.1 MGP_C3HHeJ_G0028220.1 mouse_genomes_project 4 106734497 106750963 - Ttc4 protein_coding processed_transcript MGP_C3HHeJ_T0066288.1 MGP_C3HHeJ_G0028220.1 mouse_genomes_project 4 106734670 106739811 - Ttc4 protein_coding processed_transcript MGP_C3HHeJ_T0066289.1 MGP_C3HHeJ_G0028220.1 mouse_genomes_project 4 106735301 106751143 - MGP_C3HHeJ_P0066289 Ttc4 protein_coding protein_coding MGP_C3HHeJ_T0066290.1 MGP_C3HHeJ_G0028220.1 mouse_genomes_project 4 106739907 106743971 - Ttc4 protein_coding processed_transcript MGP_C3HHeJ_T0066291.1 MGP_C3HHeJ_G0028220.1 mouse_genomes_project 4 106740410 106743319 - Ttc4 protein_coding processed_transcript MGP_C3HHeJ_T0066292.1 MGP_C3HHeJ_G0028220.1 mouse_genomes_project 4 106742750 106751168 - MGP_C3HHeJ_P0066292 Ttc4 protein_coding protein_coding MGP_C3HHeJ_T0066293.1 MGP_C3HHeJ_G0028220.1 mouse_genomes_project 4 106744025 106751178 - Ttc4 protein_coding processed_transcript MGP_C3HHeJ_T0066294.1 MGP_C3HHeJ_G0028220.1 mouse_genomes_project 4 106748566 106751166 - Ttc4 protein_coding processed_transcript MGP_C3HHeJ_T0065845.1 MGP_C3HHeJ_G0028104.1 mouse_genomes_project 4 84661329 84865349 + MGP_C3HHeJ_P0065845 Sh3gl2 protein_coding protein_coding MGP_C3HHeJ_T0065846.1 MGP_C3HHeJ_G0028104.1 mouse_genomes_project 4 84661644 84855200 + MGP_C3HHeJ_P0065846 Sh3gl2 protein_coding protein_coding MGP_C3HHeJ_T0065847.1 MGP_C3HHeJ_G0028104.1 mouse_genomes_project 4 84661672 85109530 + MGP_C3HHeJ_P0065847 Sh3gl2 protein_coding protein_coding MGP_C3HHeJ_T0065848.1 MGP_C3HHeJ_G0028104.1 mouse_genomes_project 4 84661738 84843515 + MGP_C3HHeJ_P0065848 Sh3gl2 protein_coding protein_coding MGP_C3HHeJ_T0065849.1 MGP_C3HHeJ_G0028104.1 mouse_genomes_project 4 84842164 84853428 + MGP_C3HHeJ_P0065849 Sh3gl2 protein_coding protein_coding MGP_C3HHeJ_T0069432.1 MGP_C3HHeJ_G0028919.1 mouse_genomes_project 4 157933861 157956726 + MGP_C3HHeJ_P0069432 Slc35e2 protein_coding protein_coding MGP_C3HHeJ_T0069433.1 MGP_C3HHeJ_G0028919.1 mouse_genomes_project 4 157934056 157952272 + MGP_C3HHeJ_P0069433 Slc35e2 protein_coding protein_coding MGP_C3HHeJ_T0069434.1 MGP_C3HHeJ_G0028919.1 mouse_genomes_project 4 157934388 157951501 + MGP_C3HHeJ_P0069434 Slc35e2 protein_coding protein_coding MGP_C3HHeJ_T0069435.1 MGP_C3HHeJ_G0028919.1 mouse_genomes_project 4 157942649 157951378 + Slc35e2 protein_coding processed_transcript MGP_C3HHeJ_T0014607.1 MGP_C3HHeJ_G0012711.1 mouse_genomes_project 4 132557901 132558592 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007872.1 MGP_C3HHeJ_G0006425.1 mouse_genomes_project 4 127678665 127679929 + 1700080G11Rik lincRNA lincRNA MGP_C3HHeJ_T0099348.1 MGP_C3HHeJ_G0037542.1 mouse_genomes_project 4 47726042 47726148 + Gm22685 snRNA snRNA MGP_C3HHeJ_T0100619.1 MGP_C3HHeJ_G0038813.1 mouse_genomes_project 4 41301369 41301499 - Gm23709 snoRNA snoRNA MGP_C3HHeJ_T0064707.1 MGP_C3HHeJ_G0027844.1 mouse_genomes_project 4 38636361 38638007 + Dnaja1 protein_coding processed_transcript MGP_C3HHeJ_T0064708.1 MGP_C3HHeJ_G0027844.1 mouse_genomes_project 4 38636770 38650673 + Dnaja1 protein_coding processed_transcript MGP_C3HHeJ_T0064709.1 MGP_C3HHeJ_G0027844.1 mouse_genomes_project 4 38637141 38652239 + MGP_C3HHeJ_P0064709 Dnaja1 protein_coding protein_coding MGP_C3HHeJ_T0064710.1 MGP_C3HHeJ_G0027844.1 mouse_genomes_project 4 38637156 38648646 + MGP_C3HHeJ_P0064710 Dnaja1 protein_coding protein_coding MGP_C3HHeJ_T0064711.1 MGP_C3HHeJ_G0027844.1 mouse_genomes_project 4 38637328 38646664 + MGP_C3HHeJ_P0064711 Dnaja1 protein_coding protein_coding MGP_C3HHeJ_T0064712.1 MGP_C3HHeJ_G0027844.1 mouse_genomes_project 4 38637573 38644595 + Dnaja1 protein_coding processed_transcript MGP_C3HHeJ_T0064713.1 MGP_C3HHeJ_G0027844.1 mouse_genomes_project 4 38638260 38652743 + Dnaja1 protein_coding processed_transcript MGP_C3HHeJ_T0064714.1 MGP_C3HHeJ_G0027844.1 mouse_genomes_project 4 38643083 38653776 + MGP_C3HHeJ_P0064714 Dnaja1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0014533.1 MGP_C3HHeJ_G0012637.1 mouse_genomes_project 4 108636982 108637364 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004386.1 MGP_C3HHeJ_G0003817.1 mouse_genomes_project 4 58671280 58676217 - Gm12542 antisense antisense MGP_C3HHeJ_T0014485.1 MGP_C3HHeJ_G0012589.1 mouse_genomes_project 4 92725871 92726361 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068055.1 MGP_C3HHeJ_G0028602.1 mouse_genomes_project 4 134521182 134524472 - MGP_C3HHeJ_P0068055 protein_coding protein_coding MGP_C3HHeJ_T0068056.1 MGP_C3HHeJ_G0028602.1 mouse_genomes_project 4 134521348 134523718 - protein_coding retained_intron MGP_C3HHeJ_T0068057.1 MGP_C3HHeJ_G0028602.1 mouse_genomes_project 4 134521348 134523088 - protein_coding processed_transcript MGP_C3HHeJ_T0068058.1 MGP_C3HHeJ_G0028602.1 mouse_genomes_project 4 134521348 134523064 - protein_coding processed_transcript MGP_C3HHeJ_T0068059.1 MGP_C3HHeJ_G0028602.1 mouse_genomes_project 4 134521348 134524472 - protein_coding processed_transcript MGP_C3HHeJ_T0068060.1 MGP_C3HHeJ_G0028602.1 mouse_genomes_project 4 134521348 134523703 - MGP_C3HHeJ_P0068060 protein_coding protein_coding MGP_C3HHeJ_T0068061.1 MGP_C3HHeJ_G0028602.1 mouse_genomes_project 4 134521402 134523700 - protein_coding retained_intron MGP_C3HHeJ_T0068062.1 MGP_C3HHeJ_G0028602.1 mouse_genomes_project 4 134521412 134523670 - protein_coding retained_intron MGP_C3HHeJ_T0010495.1 MGP_C3HHeJ_G0008628.1 mouse_genomes_project 4 22999225 22999335 - Gm26067 miRNA miRNA MGP_C3HHeJ_T0065387.1 MGP_C3HHeJ_G0027995.1 mouse_genomes_project 4 51454083 51462434 - MGP_C3HHeJ_P0065387 Olfr272 protein_coding protein_coding MGP_C3HHeJ_T0065388.1 MGP_C3HHeJ_G0027995.1 mouse_genomes_project 4 51454083 51455045 - MGP_C3HHeJ_P0065388 Olfr272 protein_coding protein_coding MGP_C3HHeJ_T0064500.1 MGP_C3HHeJ_G0027795.1 mouse_genomes_project 4 19447653 19463966 + Fbxl4 protein_coding processed_transcript MGP_C3HHeJ_T0064501.1 MGP_C3HHeJ_G0027795.1 mouse_genomes_project 4 19447653 19518068 + MGP_C3HHeJ_P0064501 Fbxl4 protein_coding protein_coding MGP_C3HHeJ_T0064502.1 MGP_C3HHeJ_G0027795.1 mouse_genomes_project 4 19447670 19518041 + MGP_C3HHeJ_P0064502 Fbxl4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064503.1 MGP_C3HHeJ_G0027795.1 mouse_genomes_project 4 19447681 19518065 + MGP_C3HHeJ_P0064503 Fbxl4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064504.1 MGP_C3HHeJ_G0027795.1 mouse_genomes_project 4 19447726 19518052 + MGP_C3HHeJ_P0064504 Fbxl4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011481.1 MGP_C3HHeJ_G0009614.1 mouse_genomes_project 4 106023909 106024220 - Gm24363 misc_RNA misc_RNA MGP_C3HHeJ_T0014493.1 MGP_C3HHeJ_G0012597.1 mouse_genomes_project 4 95839385 95839663 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068335.1 MGP_C3HHeJ_G0028663.1 mouse_genomes_project 4 137187795 137213588 + MGP_C3HHeJ_P0068335 Htr1d protein_coding protein_coding MGP_C3HHeJ_T0068336.1 MGP_C3HHeJ_G0028663.1 mouse_genomes_project 4 137187797 137212949 + MGP_C3HHeJ_P0068336 Htr1d protein_coding protein_coding MGP_C3HHeJ_T0068337.1 MGP_C3HHeJ_G0028663.1 mouse_genomes_project 4 137187801 137212949 + MGP_C3HHeJ_P0068337 Htr1d protein_coding protein_coding MGP_C3HHeJ_T0068338.1 MGP_C3HHeJ_G0028663.1 mouse_genomes_project 4 137188855 137211165 + Htr1d protein_coding processed_transcript MGP_C3HHeJ_T0004533.1 MGP_C3HHeJ_G0003928.1 mouse_genomes_project 4 156369787 156374660 + Trp73os antisense antisense MGP_C3HHeJ_T0004381.1 MGP_C3HHeJ_G0003812.1 mouse_genomes_project 4 45549676 45561846 - Gm12426 antisense antisense MGP_C3HHeJ_T0065600.1 MGP_C3HHeJ_G0028054.1 mouse_genomes_project 4 61403919 61407188 - MGP_C3HHeJ_P0065600 Hdhd3 protein_coding protein_coding MGP_C3HHeJ_T0065601.1 MGP_C3HHeJ_G0028054.1 mouse_genomes_project 4 61404854 61408379 - Hdhd3 protein_coding processed_transcript MGP_C3HHeJ_T0065091.1 MGP_C3HHeJ_G0027922.1 mouse_genomes_project 4 41921719 41923171 + MGP_C3HHeJ_P0065091 Hrct1 protein_coding protein_coding MGP_C3HHeJ_T0007916.1 MGP_C3HHeJ_G0006453.1 mouse_genomes_project 4 137927090 137927960 - 1700037C06Rik lincRNA lincRNA MGP_C3HHeJ_T0064844.1 MGP_C3HHeJ_G0027880.1 mouse_genomes_project 4 39776811 39779675 - MGP_C3HHeJ_P0064844 Sigmar1 protein_coding protein_coding MGP_C3HHeJ_T0064845.1 MGP_C3HHeJ_G0027880.1 mouse_genomes_project 4 39776811 39779675 - MGP_C3HHeJ_P0064845 Sigmar1 protein_coding protein_coding MGP_C3HHeJ_T0064846.1 MGP_C3HHeJ_G0027880.1 mouse_genomes_project 4 39777416 39783383 - Sigmar1 protein_coding processed_transcript MGP_C3HHeJ_T0064847.1 MGP_C3HHeJ_G0027880.1 mouse_genomes_project 4 39777821 39793647 - Sigmar1 protein_coding processed_transcript MGP_C3HHeJ_T0064848.1 MGP_C3HHeJ_G0027880.1 mouse_genomes_project 4 39778764 39779502 - Sigmar1 protein_coding retained_intron MGP_C3HHeJ_T0064849.1 MGP_C3HHeJ_G0027880.1 mouse_genomes_project 4 39778896 39779364 - Sigmar1 protein_coding retained_intron MGP_C3HHeJ_T0064850.1 MGP_C3HHeJ_G0027880.1 mouse_genomes_project 4 39778918 39779636 - Sigmar1 protein_coding processed_transcript MGP_C3HHeJ_T0064851.1 MGP_C3HHeJ_G0027880.1 mouse_genomes_project 4 39793075 39794405 - Sigmar1 protein_coding processed_transcript MGP_C3HHeJ_T0101996.1 MGP_C3HHeJ_G0039961.1 mouse_genomes_project 4 88325122 88325667 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099409.1 MGP_C3HHeJ_G0037603.1 mouse_genomes_project 4 150526117 150526225 + Gm23318 snRNA snRNA MGP_C3HHeJ_T0099345.1 MGP_C3HHeJ_G0037539.1 mouse_genomes_project 4 41364691 41364756 - Gm25010 snRNA snRNA MGP_C3HHeJ_T0064472.1 MGP_C3HHeJ_G0027791.1 mouse_genomes_project 4 18813803 18830019 + Usp45 protein_coding processed_transcript MGP_C3HHeJ_T0064473.1 MGP_C3HHeJ_G0027791.1 mouse_genomes_project 4 18823802 18832367 + Usp45 protein_coding retained_intron MGP_C3HHeJ_T0064474.1 MGP_C3HHeJ_G0027791.1 mouse_genomes_project 4 18823813 18889710 + MGP_C3HHeJ_P0064474 Usp45 protein_coding protein_coding MGP_C3HHeJ_T0064475.1 MGP_C3HHeJ_G0027791.1 mouse_genomes_project 4 18823813 18889712 + MGP_C3HHeJ_P0064475 Usp45 protein_coding protein_coding MGP_C3HHeJ_T0064476.1 MGP_C3HHeJ_G0027791.1 mouse_genomes_project 4 18823822 18847107 + MGP_C3HHeJ_P0064476 Usp45 protein_coding protein_coding MGP_C3HHeJ_T0064477.1 MGP_C3HHeJ_G0027791.1 mouse_genomes_project 4 18823839 18889712 + MGP_C3HHeJ_P0064477 Usp45 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064478.1 MGP_C3HHeJ_G0027791.1 mouse_genomes_project 4 18829279 18889710 + MGP_C3HHeJ_P0064478 Usp45 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064479.1 MGP_C3HHeJ_G0027791.1 mouse_genomes_project 4 18832250 18866724 + MGP_C3HHeJ_P0064479 Usp45 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067200.1 MGP_C3HHeJ_G0028408.1 mouse_genomes_project 4 121102943 121133722 - MGP_C3HHeJ_P0067200 Ctps protein_coding protein_coding MGP_C3HHeJ_T0067201.1 MGP_C3HHeJ_G0028408.1 mouse_genomes_project 4 121104986 121108143 - Ctps protein_coding processed_transcript MGP_C3HHeJ_T0067202.1 MGP_C3HHeJ_G0028408.1 mouse_genomes_project 4 121105044 121111722 - Ctps protein_coding processed_transcript MGP_C3HHeJ_T0065289.1 MGP_C3HHeJ_G0027966.1 mouse_genomes_project 4 45561547 45676430 + MGP_C3HHeJ_P0065289 Col15a1 protein_coding protein_coding MGP_C3HHeJ_T0065290.1 MGP_C3HHeJ_G0027966.1 mouse_genomes_project 4 45561547 45676434 + MGP_C3HHeJ_P0065290 Col15a1 protein_coding protein_coding MGP_C3HHeJ_T0065291.1 MGP_C3HHeJ_G0027966.1 mouse_genomes_project 4 45586754 45598752 + Col15a1 protein_coding processed_transcript MGP_C3HHeJ_T0065292.1 MGP_C3HHeJ_G0027966.1 mouse_genomes_project 4 45611769 45615209 + Col15a1 protein_coding processed_transcript MGP_C3HHeJ_T0065293.1 MGP_C3HHeJ_G0027966.1 mouse_genomes_project 4 45612090 45615398 + Col15a1 protein_coding processed_transcript MGP_C3HHeJ_T0065294.1 MGP_C3HHeJ_G0027966.1 mouse_genomes_project 4 45640981 45646147 + MGP_C3HHeJ_P0065294 Col15a1 protein_coding protein_coding MGP_C3HHeJ_T0065295.1 MGP_C3HHeJ_G0027966.1 mouse_genomes_project 4 45640993 45676434 + MGP_C3HHeJ_P0065295 Col15a1 protein_coding protein_coding MGP_C3HHeJ_T0065296.1 MGP_C3HHeJ_G0027966.1 mouse_genomes_project 4 45641211 45652153 + MGP_C3HHeJ_P0065296 Col15a1 protein_coding protein_coding MGP_C3HHeJ_T0065297.1 MGP_C3HHeJ_G0027966.1 mouse_genomes_project 4 45661934 45676429 + MGP_C3HHeJ_P0065297 Col15a1 protein_coding protein_coding MGP_C3HHeJ_T0067746.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130276493 130314843 + MGP_C3HHeJ_P0067746 Adgrb2 protein_coding protein_coding MGP_C3HHeJ_T0067747.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130276778 130314843 + MGP_C3HHeJ_P0067747 Adgrb2 protein_coding protein_coding MGP_C3HHeJ_T0067748.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130276882 130314843 + MGP_C3HHeJ_P0067748 Adgrb2 protein_coding protein_coding MGP_C3HHeJ_T0067749.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130283663 130314843 + MGP_C3HHeJ_P0067749 Adgrb2 protein_coding protein_coding MGP_C3HHeJ_T0067750.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130283664 130314549 + MGP_C3HHeJ_P0067750 Adgrb2 protein_coding protein_coding MGP_C3HHeJ_T0067751.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130283664 130314549 + MGP_C3HHeJ_P0067751 Adgrb2 protein_coding protein_coding MGP_C3HHeJ_T0067752.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130283664 130314549 + MGP_C3HHeJ_P0067752 Adgrb2 protein_coding protein_coding MGP_C3HHeJ_T0067753.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130302073 130304065 + Adgrb2 protein_coding retained_intron MGP_C3HHeJ_T0067754.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130302266 130304745 + Adgrb2 protein_coding retained_intron MGP_C3HHeJ_T0067755.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130304399 130304776 + Adgrb2 protein_coding retained_intron MGP_C3HHeJ_T0067756.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130305838 130306784 + Adgrb2 protein_coding retained_intron MGP_C3HHeJ_T0067757.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130310987 130313774 + Adgrb2 protein_coding retained_intron MGP_C3HHeJ_T0067758.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130313325 130314641 + Adgrb2 protein_coding retained_intron MGP_C3HHeJ_T0067531.1 MGP_C3HHeJ_G0028491.1 mouse_genomes_project 4 127379621 127383639 + MGP_C3HHeJ_P0067531 Smim12 protein_coding protein_coding MGP_C3HHeJ_T0007804.1 MGP_C3HHeJ_G0006376.1 mouse_genomes_project 4 88923390 88969179 - lincRNA lincRNA MGP_C3HHeJ_T0007805.1 MGP_C3HHeJ_G0006376.1 mouse_genomes_project 4 88923408 88972744 - lincRNA lincRNA MGP_C3HHeJ_T0014586.1 MGP_C3HHeJ_G0012690.1 mouse_genomes_project 4 123373856 123374174 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011469.1 MGP_C3HHeJ_G0009602.1 mouse_genomes_project 4 45971857 45971977 + Gm27668 misc_RNA misc_RNA MGP_C3HHeJ_T0014290.1 MGP_C3HHeJ_G0012394.1 mouse_genomes_project 4 19918795 19921510 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007739.1 MGP_C3HHeJ_G0006321.1 mouse_genomes_project 4 31679708 31683737 + Gm12753 lincRNA lincRNA MGP_C3HHeJ_T0069490.1 MGP_C3HHeJ_G0028933.1 mouse_genomes_project 4 158167826 158169287 + MGP_C3HHeJ_P0069490 Aurkaip1 protein_coding protein_coding MGP_C3HHeJ_T0069491.1 MGP_C3HHeJ_G0028933.1 mouse_genomes_project 4 158167905 158169679 + MGP_C3HHeJ_P0069491 Aurkaip1 protein_coding protein_coding MGP_C3HHeJ_T0069492.1 MGP_C3HHeJ_G0028933.1 mouse_genomes_project 4 158168167 158169013 + Aurkaip1 protein_coding retained_intron MGP_C3HHeJ_T0069493.1 MGP_C3HHeJ_G0028933.1 mouse_genomes_project 4 158168207 158169610 + MGP_C3HHeJ_P0069493 Aurkaip1 protein_coding protein_coding MGP_C3HHeJ_T0069494.1 MGP_C3HHeJ_G0028933.1 mouse_genomes_project 4 158168213 158169077 + Aurkaip1 protein_coding processed_transcript MGP_C3HHeJ_T0069495.1 MGP_C3HHeJ_G0028933.1 mouse_genomes_project 4 158168217 158169580 + MGP_C3HHeJ_P0069495 Aurkaip1 protein_coding protein_coding MGP_C3HHeJ_T0066837.1 MGP_C3HHeJ_G0028327.1 mouse_genomes_project 4 117101330 117103635 + Prdx1 protein_coding retained_intron MGP_C3HHeJ_T0066838.1 MGP_C3HHeJ_G0028327.1 mouse_genomes_project 4 117101330 117109573 + MGP_C3HHeJ_P0066838 Prdx1 protein_coding protein_coding MGP_C3HHeJ_T0066839.1 MGP_C3HHeJ_G0028327.1 mouse_genomes_project 4 117101332 117114987 + MGP_C3HHeJ_P0066839 Prdx1 protein_coding protein_coding MGP_C3HHeJ_T0066840.1 MGP_C3HHeJ_G0028327.1 mouse_genomes_project 4 117101592 117108723 + MGP_C3HHeJ_P0066840 Prdx1 protein_coding protein_coding MGP_C3HHeJ_T0066841.1 MGP_C3HHeJ_G0028327.1 mouse_genomes_project 4 117103050 117114917 + MGP_C3HHeJ_P0066841 Prdx1 protein_coding protein_coding MGP_C3HHeJ_T0004494.1 MGP_C3HHeJ_G0003899.1 mouse_genomes_project 4 142233455 142235883 + 4921514A10Rik antisense antisense MGP_C3HHeJ_T0004466.1 MGP_C3HHeJ_G0003876.1 mouse_genomes_project 4 129135206 129140387 + Gm15904 antisense antisense MGP_C3HHeJ_T0064740.1 MGP_C3HHeJ_G0027853.1 mouse_genomes_project 4 39065635 39076411 - MGP_C3HHeJ_P0064740 Nol6 protein_coding protein_coding MGP_C3HHeJ_T0064741.1 MGP_C3HHeJ_G0027853.1 mouse_genomes_project 4 39072539 39074508 - Nol6 protein_coding processed_transcript MGP_C3HHeJ_T0064742.1 MGP_C3HHeJ_G0027853.1 mouse_genomes_project 4 39072755 39074743 - Nol6 protein_coding processed_transcript MGP_C3HHeJ_T0064743.1 MGP_C3HHeJ_G0027853.1 mouse_genomes_project 4 39073087 39073963 - Nol6 protein_coding processed_transcript MGP_C3HHeJ_T0014576.1 MGP_C3HHeJ_G0012680.1 mouse_genomes_project 4 121722230 121724380 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065494.1 MGP_C3HHeJ_G0028025.1 mouse_genomes_project 4 56958773 57050212 + MGP_C3HHeJ_P0065494 Musk protein_coding protein_coding MGP_C3HHeJ_T0065495.1 MGP_C3HHeJ_G0028025.1 mouse_genomes_project 4 56958775 57050212 + MGP_C3HHeJ_P0065495 Musk protein_coding protein_coding MGP_C3HHeJ_T0065496.1 MGP_C3HHeJ_G0028025.1 mouse_genomes_project 4 56958775 57050213 + MGP_C3HHeJ_P0065496 Musk protein_coding protein_coding MGP_C3HHeJ_T0065497.1 MGP_C3HHeJ_G0028025.1 mouse_genomes_project 4 56958775 57050212 + MGP_C3HHeJ_P0065497 Musk protein_coding protein_coding MGP_C3HHeJ_T0065498.1 MGP_C3HHeJ_G0028025.1 mouse_genomes_project 4 56958775 57050212 + MGP_C3HHeJ_P0065498 Musk protein_coding protein_coding MGP_C3HHeJ_T0065499.1 MGP_C3HHeJ_G0028025.1 mouse_genomes_project 4 56958775 57050213 + MGP_C3HHeJ_P0065499 Musk protein_coding protein_coding MGP_C3HHeJ_T0065500.1 MGP_C3HHeJ_G0028025.1 mouse_genomes_project 4 56958775 57050213 + MGP_C3HHeJ_P0065500 Musk protein_coding protein_coding MGP_C3HHeJ_T0065501.1 MGP_C3HHeJ_G0028025.1 mouse_genomes_project 4 56958986 56977974 + Musk protein_coding processed_transcript MGP_C3HHeJ_T0068815.1 MGP_C3HHeJ_G0028804.1 mouse_genomes_project 4 146796012 146843757 - MGP_C3HHeJ_P0068815 Tnfrsf8 protein_coding protein_coding MGP_C3HHeJ_T0068816.1 MGP_C3HHeJ_G0028804.1 mouse_genomes_project 4 146796014 146843774 - MGP_C3HHeJ_P0068816 Tnfrsf8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064584.1 MGP_C3HHeJ_G0027813.1 mouse_genomes_project 4 30243062 30306602 - MGP_C3HHeJ_P0064584 Ankrd6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0064585.1 MGP_C3HHeJ_G0027813.1 mouse_genomes_project 4 30243069 30398430 - MGP_C3HHeJ_P0064585 Ankrd6 protein_coding protein_coding MGP_C3HHeJ_T0064586.1 MGP_C3HHeJ_G0027813.1 mouse_genomes_project 4 30244774 30302857 - MGP_C3HHeJ_P0064586 Ankrd6 protein_coding protein_coding MGP_C3HHeJ_T0064587.1 MGP_C3HHeJ_G0027813.1 mouse_genomes_project 4 30262019 30263600 - Ankrd6 protein_coding processed_transcript MGP_C3HHeJ_T0064588.1 MGP_C3HHeJ_G0027813.1 mouse_genomes_project 4 30265262 30366360 - Ankrd6 protein_coding processed_transcript MGP_C3HHeJ_T0064589.1 MGP_C3HHeJ_G0027813.1 mouse_genomes_project 4 30267947 30303098 - Ankrd6 protein_coding processed_transcript MGP_C3HHeJ_T0017888.1 MGP_C3HHeJ_G0015346.1 mouse_genomes_project 4 157258028 157258937 - Gm20421 processed_transcript processed_transcript MGP_C3HHeJ_T0007777.1 MGP_C3HHeJ_G0006352.1 mouse_genomes_project 4 56849554 56879728 + Gm26889 lincRNA lincRNA MGP_C3HHeJ_T0102018.1 MGP_C3HHeJ_G0039983.1 mouse_genomes_project 4 122532716 122561803 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0065109.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42245070 42297853 - MGP_C3HHeJ_P0065109 Gne protein_coding protein_coding MGP_C3HHeJ_T0065110.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42247805 42268147 - MGP_C3HHeJ_P0065110 Gne protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065111.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42247821 42286036 - MGP_C3HHeJ_P0065111 Gne protein_coding protein_coding MGP_C3HHeJ_T0065112.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42247825 42279484 - MGP_C3HHeJ_P0065112 Gne protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065113.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42247953 42279524 - MGP_C3HHeJ_P0065113 Gne protein_coding protein_coding MGP_C3HHeJ_T0065114.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42256985 42285882 - MGP_C3HHeJ_P0065114 Gne protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065115.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42265724 42279625 - MGP_C3HHeJ_P0065115 Gne protein_coding protein_coding MGP_C3HHeJ_T0065116.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42268154 42276023 - Gne protein_coding retained_intron MGP_C3HHeJ_T0065117.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42272549 42297843 - Gne protein_coding retained_intron MGP_C3HHeJ_T0065118.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42272717 42297599 - MGP_C3HHeJ_P0065118 Gne protein_coding protein_coding MGP_C3HHeJ_T0065119.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42272821 42285994 - Gne protein_coding processed_transcript MGP_C3HHeJ_T0065120.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42272840 42285860 - MGP_C3HHeJ_P0065120 Gne protein_coding protein_coding MGP_C3HHeJ_T0065121.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42272952 42286275 - MGP_C3HHeJ_P0065121 Gne protein_coding protein_coding MGP_C3HHeJ_T0065122.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42272961 42286276 - MGP_C3HHeJ_P0065122 Gne protein_coding protein_coding MGP_C3HHeJ_T0007754.1 MGP_C3HHeJ_G0006335.1 mouse_genomes_project 4 44011230 44012484 + Gm12410 lincRNA lincRNA MGP_C3HHeJ_T0004489.1 MGP_C3HHeJ_G0003894.1 mouse_genomes_project 4 139313587 139317690 + AB041806 antisense antisense MGP_C3HHeJ_T0102027.1 MGP_C3HHeJ_G0039992.1 mouse_genomes_project 4 145440549 145443958 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0069595.1 MGP_C3HHeJ_G0028956.1 mouse_genomes_project 4 158622600 158632726 - MGP_C3HHeJ_P0069595 Samd11 protein_coding protein_coding MGP_C3HHeJ_T0069596.1 MGP_C3HHeJ_G0028956.1 mouse_genomes_project 4 158624610 158631925 - MGP_C3HHeJ_P0069596 Samd11 protein_coding unknown_likely_coding MGP_C3HHeJ_T0064719.1 MGP_C3HHeJ_G0027846.1 mouse_genomes_project 4 38736238 38787991 - MGP_C3HHeJ_P0064719 B4galt1 protein_coding protein_coding MGP_C3HHeJ_T0064720.1 MGP_C3HHeJ_G0027846.1 mouse_genomes_project 4 38740779 38787991 - MGP_C3HHeJ_P0064720 B4galt1 protein_coding protein_coding MGP_C3HHeJ_T0011466.1 MGP_C3HHeJ_G0009599.1 mouse_genomes_project 4 42108320 42108397 + Gm27265 misc_RNA misc_RNA MGP_C3HHeJ_T0065317.1 MGP_C3HHeJ_G0027972.1 mouse_genomes_project 4 46584942 46670119 - MGP_C3HHeJ_P0065317 Erp44 protein_coding protein_coding MGP_C3HHeJ_T0065318.1 MGP_C3HHeJ_G0027972.1 mouse_genomes_project 4 46586109 46588644 - Erp44 protein_coding processed_transcript MGP_C3HHeJ_T0065319.1 MGP_C3HHeJ_G0027972.1 mouse_genomes_project 4 46631607 46637827 - Erp44 protein_coding processed_transcript MGP_C3HHeJ_T0065320.1 MGP_C3HHeJ_G0027972.1 mouse_genomes_project 4 46634250 46670013 - Erp44 protein_coding processed_transcript MGP_C3HHeJ_T0004490.1 MGP_C3HHeJ_G0003895.1 mouse_genomes_project 4 140164711 140169913 - Gm16287 antisense antisense MGP_C3HHeJ_T0011483.1 MGP_C3HHeJ_G0009616.1 mouse_genomes_project 4 112205523 112205849 - Gm25844 misc_RNA misc_RNA MGP_C3HHeJ_T0066109.1 MGP_C3HHeJ_G0028173.1 mouse_genomes_project 4 99095582 99160045 + MGP_C3HHeJ_P0066109 Atg4c protein_coding protein_coding MGP_C3HHeJ_T0066110.1 MGP_C3HHeJ_G0028173.1 mouse_genomes_project 4 99095795 99160041 + MGP_C3HHeJ_P0066110 Atg4c protein_coding protein_coding MGP_C3HHeJ_T0066111.1 MGP_C3HHeJ_G0028173.1 mouse_genomes_project 4 99120371 99124547 + Atg4c protein_coding processed_transcript MGP_C3HHeJ_T0066722.1 MGP_C3HHeJ_G0028305.1 mouse_genomes_project 4 116202748 116210839 + MGP_C3HHeJ_P0066722 Mob3c protein_coding protein_coding MGP_C3HHeJ_T0066723.1 MGP_C3HHeJ_G0028305.1 mouse_genomes_project 4 116202753 116206364 + Mob3c protein_coding retained_intron MGP_C3HHeJ_T0066724.1 MGP_C3HHeJ_G0028305.1 mouse_genomes_project 4 116203314 116206194 + MGP_C3HHeJ_P0066724 Mob3c protein_coding protein_coding MGP_C3HHeJ_T0068105.1 MGP_C3HHeJ_G0028609.1 mouse_genomes_project 4 134702381 134703765 - MGP_C3HHeJ_P0068105 Sh3bgrl3 protein_coding protein_coding MGP_C3HHeJ_T0068106.1 MGP_C3HHeJ_G0028609.1 mouse_genomes_project 4 134702388 134703715 - MGP_C3HHeJ_P0068106 Sh3bgrl3 protein_coding protein_coding MGP_C3HHeJ_T0068107.1 MGP_C3HHeJ_G0028609.1 mouse_genomes_project 4 134702815 134703713 - Sh3bgrl3 protein_coding retained_intron MGP_C3HHeJ_T0099344.1 MGP_C3HHeJ_G0037538.1 mouse_genomes_project 4 39315698 39315802 - Gm26084 snRNA snRNA MGP_C3HHeJ_T0014535.1 MGP_C3HHeJ_G0012639.1 mouse_genomes_project 4 109109174 109109410 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014590.1 MGP_C3HHeJ_G0012694.1 mouse_genomes_project 4 123896895 123897217 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066538.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109243105 109309552 - MGP_C3HHeJ_P0066538 Osbpl9 protein_coding protein_coding MGP_C3HHeJ_T0066539.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109243574 109397373 - MGP_C3HHeJ_P0066539 Osbpl9 protein_coding protein_coding MGP_C3HHeJ_T0066540.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109243609 109309566 - MGP_C3HHeJ_P0066540 Osbpl9 protein_coding protein_coding MGP_C3HHeJ_T0066541.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109243614 109397373 - MGP_C3HHeJ_P0066541 Osbpl9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066542.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109243614 109397411 - MGP_C3HHeJ_P0066542 Osbpl9 protein_coding protein_coding MGP_C3HHeJ_T0066543.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109243614 109397356 - MGP_C3HHeJ_P0066543 Osbpl9 protein_coding protein_coding MGP_C3HHeJ_T0066544.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109243933 109278389 - Osbpl9 protein_coding processed_transcript MGP_C3HHeJ_T0066545.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109244038 109397411 - MGP_C3HHeJ_P0066545 Osbpl9 protein_coding protein_coding MGP_C3HHeJ_T0066546.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109244046 109350409 - MGP_C3HHeJ_P0066546 Osbpl9 protein_coding protein_coding MGP_C3HHeJ_T0066547.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109253523 109255076 - Osbpl9 protein_coding processed_transcript MGP_C3HHeJ_T0066548.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109257095 109261924 - Osbpl9 protein_coding processed_transcript MGP_C3HHeJ_T0066549.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109257449 109309228 - Osbpl9 protein_coding processed_transcript MGP_C3HHeJ_T0066550.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109274028 109301299 - Osbpl9 protein_coding processed_transcript MGP_C3HHeJ_T0066551.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109274152 109350595 - Osbpl9 protein_coding retained_intron MGP_C3HHeJ_T0066552.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109277341 109279719 - Osbpl9 protein_coding retained_intron MGP_C3HHeJ_T0066553.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109278349 109299565 - Osbpl9 protein_coding processed_transcript MGP_C3HHeJ_T0066554.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109278386 109350924 - Osbpl9 protein_coding processed_transcript MGP_C3HHeJ_T0066555.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109325980 109397375 - Osbpl9 protein_coding processed_transcript MGP_C3HHeJ_T0066556.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109366018 109397373 - Osbpl9 protein_coding retained_intron MGP_C3HHeJ_T0099411.1 MGP_C3HHeJ_G0037605.1 mouse_genomes_project 4 152406061 152406171 + Gm23209 snRNA snRNA MGP_C3HHeJ_T0067497.1 MGP_C3HHeJ_G0028485.1 mouse_genomes_project 4 126976172 127091725 - MGP_C3HHeJ_P0067497 Zmym4 protein_coding protein_coding MGP_C3HHeJ_T0067498.1 MGP_C3HHeJ_G0028485.1 mouse_genomes_project 4 126982907 126984718 - Zmym4 protein_coding processed_transcript MGP_C3HHeJ_T0067499.1 MGP_C3HHeJ_G0028485.1 mouse_genomes_project 4 127020083 127030627 - Zmym4 protein_coding processed_transcript MGP_C3HHeJ_T0067500.1 MGP_C3HHeJ_G0028485.1 mouse_genomes_project 4 127025284 127030515 - Zmym4 protein_coding processed_transcript MGP_C3HHeJ_T0067501.1 MGP_C3HHeJ_G0028485.1 mouse_genomes_project 4 127030344 127041905 - Zmym4 protein_coding processed_transcript MGP_C3HHeJ_T0067502.1 MGP_C3HHeJ_G0028485.1 mouse_genomes_project 4 127041543 127044270 - Zmym4 protein_coding processed_transcript MGP_C3HHeJ_T0067503.1 MGP_C3HHeJ_G0028485.1 mouse_genomes_project 4 127044268 127091770 - Zmym4 protein_coding processed_transcript MGP_C3HHeJ_T0067504.1 MGP_C3HHeJ_G0028485.1 mouse_genomes_project 4 127044301 127091794 - Zmym4 protein_coding processed_transcript MGP_C3HHeJ_T0065177.1 MGP_C3HHeJ_G0027938.1 mouse_genomes_project 4 43285285 43301318 + MGP_C3HHeJ_P0065177 Polr1e protein_coding protein_coding MGP_C3HHeJ_T0065178.1 MGP_C3HHeJ_G0027938.1 mouse_genomes_project 4 43285364 43299991 + MGP_C3HHeJ_P0065178 Polr1e protein_coding protein_coding MGP_C3HHeJ_T0065179.1 MGP_C3HHeJ_G0027938.1 mouse_genomes_project 4 43285365 43304191 + MGP_C3HHeJ_P0065179 Polr1e protein_coding protein_coding MGP_C3HHeJ_T0065180.1 MGP_C3HHeJ_G0027938.1 mouse_genomes_project 4 43285399 43293573 + Polr1e protein_coding processed_transcript MGP_C3HHeJ_T0065181.1 MGP_C3HHeJ_G0027938.1 mouse_genomes_project 4 43285937 43299738 + MGP_C3HHeJ_P0065181 Polr1e protein_coding protein_coding MGP_C3HHeJ_T0065182.1 MGP_C3HHeJ_G0027938.1 mouse_genomes_project 4 43295846 43299011 + Polr1e protein_coding processed_transcript MGP_C3HHeJ_T0065183.1 MGP_C3HHeJ_G0027938.1 mouse_genomes_project 4 43297964 43299986 + Polr1e protein_coding processed_transcript MGP_C3HHeJ_T0064447.1 MGP_C3HHeJ_G0027782.1 mouse_genomes_project 4 16628214 16725733 - MGP_C3HHeJ_P0064447 Wwp1 protein_coding protein_coding MGP_C3HHeJ_T0064448.1 MGP_C3HHeJ_G0027782.1 mouse_genomes_project 4 16629584 16693328 - MGP_C3HHeJ_P0064448 Wwp1 protein_coding protein_coding MGP_C3HHeJ_T0067310.1 MGP_C3HHeJ_G0028440.1 mouse_genomes_project 4 123685463 123706249 - MGP_C3HHeJ_P0067310 Akirin1 protein_coding protein_coding MGP_C3HHeJ_T0067311.1 MGP_C3HHeJ_G0028440.1 mouse_genomes_project 4 123688821 123699418 - Akirin1 protein_coding processed_transcript MGP_C3HHeJ_T0067312.1 MGP_C3HHeJ_G0028440.1 mouse_genomes_project 4 123689947 123706135 - Akirin1 protein_coding processed_transcript MGP_C3HHeJ_T0064439.1 MGP_C3HHeJ_G0027777.1 mouse_genomes_project 4 15845902 16127897 - MGP_C3HHeJ_P0064439 Cnbd1 protein_coding protein_coding MGP_C3HHeJ_T0014329.1 MGP_C3HHeJ_G0012433.1 mouse_genomes_project 4 30453466 30453793 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066416.1 MGP_C3HHeJ_G0028239.1 mouse_genomes_project 4 107999848 108007443 + MGP_C3HHeJ_P0066416 Magoh protein_coding protein_coding MGP_C3HHeJ_T0066417.1 MGP_C3HHeJ_G0028239.1 mouse_genomes_project 4 108003087 108007406 + Magoh protein_coding processed_transcript MGP_C3HHeJ_T0068759.1 MGP_C3HHeJ_G0028769.1 mouse_genomes_project 4 144781777 144870375 + MGP_C3HHeJ_P0068759 protein_coding protein_coding MGP_C3HHeJ_T0066996.1 MGP_C3HHeJ_G0028355.1 mouse_genomes_project 4 118387777 118391168 - MGP_C3HHeJ_P0066996 Dph2 protein_coding protein_coding MGP_C3HHeJ_T0066997.1 MGP_C3HHeJ_G0028355.1 mouse_genomes_project 4 118388041 118391156 - Dph2 protein_coding retained_intron MGP_C3HHeJ_T0066998.1 MGP_C3HHeJ_G0028355.1 mouse_genomes_project 4 118388050 118391159 - MGP_C3HHeJ_P0066998 Dph2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066999.1 MGP_C3HHeJ_G0028355.1 mouse_genomes_project 4 118390212 118391122 - Dph2 protein_coding retained_intron MGP_C3HHeJ_T0067101.1 MGP_C3HHeJ_G0028388.1 mouse_genomes_project 4 119724900 119730676 + MGP_C3HHeJ_P0067101 Svbp protein_coding protein_coding MGP_C3HHeJ_T0067102.1 MGP_C3HHeJ_G0028388.1 mouse_genomes_project 4 119725001 119730676 + MGP_C3HHeJ_P0067102 Svbp protein_coding protein_coding MGP_C3HHeJ_T0067103.1 MGP_C3HHeJ_G0028388.1 mouse_genomes_project 4 119725090 119730676 + MGP_C3HHeJ_P0067103 Svbp protein_coding protein_coding MGP_C3HHeJ_T0065623.1 MGP_C3HHeJ_G0028059.1 mouse_genomes_project 4 61887364 62054965 + MGP_C3HHeJ_P0065623 Zfp618 protein_coding protein_coding MGP_C3HHeJ_T0065624.1 MGP_C3HHeJ_G0028059.1 mouse_genomes_project 4 61887364 62031186 + MGP_C3HHeJ_P0065624 Zfp618 protein_coding protein_coding MGP_C3HHeJ_T0065625.1 MGP_C3HHeJ_G0028059.1 mouse_genomes_project 4 61887365 62049283 + MGP_C3HHeJ_P0065625 Zfp618 protein_coding protein_coding MGP_C3HHeJ_T0065626.1 MGP_C3HHeJ_G0028059.1 mouse_genomes_project 4 62035839 62036868 + Zfp618 protein_coding processed_transcript MGP_C3HHeJ_T0067641.1 MGP_C3HHeJ_G0028517.1 mouse_genomes_project 4 129585194 129613699 - MGP_C3HHeJ_P0067641 Zbtb8a protein_coding protein_coding MGP_C3HHeJ_T0064657.1 MGP_C3HHeJ_G0027831.1 mouse_genomes_project 4 32360295 32448823 - MGP_C3HHeJ_P0064657 Zfp292 protein_coding protein_coding MGP_C3HHeJ_T0064658.1 MGP_C3HHeJ_G0027831.1 mouse_genomes_project 4 32360295 32448793 - MGP_C3HHeJ_P0064658 Zfp292 protein_coding protein_coding MGP_C3HHeJ_T0068315.1 MGP_C3HHeJ_G0028659.1 mouse_genomes_project 4 136956959 136996540 + MGP_C3HHeJ_P0068315 Asap3 protein_coding protein_coding MGP_C3HHeJ_T0014562.1 MGP_C3HHeJ_G0012666.1 mouse_genomes_project 4 118324131 118324607 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065382.1 MGP_C3HHeJ_G0027992.1 mouse_genomes_project 4 51131719 51147003 + MGP_C3HHeJ_P0065382 Toporsl protein_coding protein_coding MGP_C3HHeJ_T0065383.1 MGP_C3HHeJ_G0027992.1 mouse_genomes_project 4 51141784 51147000 + MGP_C3HHeJ_P0065383 Toporsl protein_coding protein_coding MGP_C3HHeJ_T0099404.1 MGP_C3HHeJ_G0037598.1 mouse_genomes_project 4 139788422 139788523 - Gm25280 snRNA snRNA MGP_C3HHeJ_T0014318.1 MGP_C3HHeJ_G0012422.1 mouse_genomes_project 4 26474888 26475609 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099385.1 MGP_C3HHeJ_G0037579.1 mouse_genomes_project 4 121496031 121496135 + Gm24678 snRNA snRNA MGP_C3HHeJ_T0014343.1 MGP_C3HHeJ_G0012447.1 mouse_genomes_project 4 34907609 34908077 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017844.1 MGP_C3HHeJ_G0015321.1 mouse_genomes_project 4 95245953 95249402 + Gm12707 processed_transcript processed_transcript MGP_C3HHeJ_T0069210.1 MGP_C3HHeJ_G0028883.1 mouse_genomes_project 4 154539434 154591581 + MGP_C3HHeJ_P0069210 Chd5 protein_coding protein_coding MGP_C3HHeJ_T0069211.1 MGP_C3HHeJ_G0028883.1 mouse_genomes_project 4 154539434 154591581 + MGP_C3HHeJ_P0069211 Chd5 protein_coding protein_coding MGP_C3HHeJ_T0069212.1 MGP_C3HHeJ_G0028883.1 mouse_genomes_project 4 154539670 154591568 + MGP_C3HHeJ_P0069212 Chd5 protein_coding protein_coding MGP_C3HHeJ_T0069213.1 MGP_C3HHeJ_G0028883.1 mouse_genomes_project 4 154542378 154554382 + Chd5 protein_coding processed_transcript MGP_C3HHeJ_T0069214.1 MGP_C3HHeJ_G0028883.1 mouse_genomes_project 4 154572578 154591568 + Chd5 protein_coding processed_transcript MGP_C3HHeJ_T0099335.1 MGP_C3HHeJ_G0037529.1 mouse_genomes_project 4 29421625 29421743 - Gm26254 snRNA snRNA MGP_C3HHeJ_T0014326.1 MGP_C3HHeJ_G0012430.1 mouse_genomes_project 4 30050663 30051038 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099412.1 MGP_C3HHeJ_G0037606.1 mouse_genomes_project 4 153107359 153107519 + Gm23405 snRNA snRNA MGP_C3HHeJ_T0068357.1 MGP_C3HHeJ_G0028668.1 mouse_genomes_project 4 137400545 137418093 + MGP_C3HHeJ_P0068357 Lactbl1 protein_coding protein_coding MGP_C3HHeJ_T0069512.1 MGP_C3HHeJ_G0028937.1 mouse_genomes_project 4 158204457 158209176 - MGP_C3HHeJ_P0069512 Cptp protein_coding protein_coding MGP_C3HHeJ_T0069513.1 MGP_C3HHeJ_G0028937.1 mouse_genomes_project 4 158205032 158209098 - Cptp protein_coding processed_transcript MGP_C3HHeJ_T0069514.1 MGP_C3HHeJ_G0028937.1 mouse_genomes_project 4 158206099 158208554 - MGP_C3HHeJ_P0069514 Cptp protein_coding protein_coding MGP_C3HHeJ_T0014662.1 MGP_C3HHeJ_G0012766.1 mouse_genomes_project 4 156319654 156319760 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014489.1 MGP_C3HHeJ_G0012593.1 mouse_genomes_project 4 93549961 93550219 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067908.1 MGP_C3HHeJ_G0028566.1 mouse_genomes_project 4 132794307 132865342 - MGP_C3HHeJ_P0067908 Phactr4 protein_coding protein_coding MGP_C3HHeJ_T0067909.1 MGP_C3HHeJ_G0028566.1 mouse_genomes_project 4 132794314 132865299 - MGP_C3HHeJ_P0067909 Phactr4 protein_coding protein_coding MGP_C3HHeJ_T0067910.1 MGP_C3HHeJ_G0028566.1 mouse_genomes_project 4 132796646 132840502 - MGP_C3HHeJ_P0067910 Phactr4 protein_coding protein_coding MGP_C3HHeJ_T0067911.1 MGP_C3HHeJ_G0028566.1 mouse_genomes_project 4 132799070 132811226 - Phactr4 protein_coding processed_transcript MGP_C3HHeJ_T0067912.1 MGP_C3HHeJ_G0028566.1 mouse_genomes_project 4 132811645 132865294 - MGP_C3HHeJ_P0067912 Phactr4 protein_coding protein_coding MGP_C3HHeJ_T0067913.1 MGP_C3HHeJ_G0028566.1 mouse_genomes_project 4 132819881 132840490 - MGP_C3HHeJ_P0067913 Phactr4 protein_coding protein_coding MGP_C3HHeJ_T0004491.1 MGP_C3HHeJ_G0003896.1 mouse_genomes_project 4 141194760 141196231 + Gm13027 antisense antisense MGP_C3HHeJ_T0069587.1 MGP_C3HHeJ_G0028950.1 mouse_genomes_project 4 158566039 158567328 - MGP_C3HHeJ_P0069587 Isg15 protein_coding protein_coding MGP_C3HHeJ_T0007731.1 MGP_C3HHeJ_G0006313.1 mouse_genomes_project 4 20347866 20481185 + Gm11884 lincRNA lincRNA MGP_C3HHeJ_T0004488.1 MGP_C3HHeJ_G0003893.1 mouse_genomes_project 4 139034479 139035404 - 1700095J12Rik antisense antisense MGP_C3HHeJ_T0067442.1 MGP_C3HHeJ_G0028472.1 mouse_genomes_project 4 126341002 126355089 + MGP_C3HHeJ_P0067442 Trappc3 protein_coding protein_coding MGP_C3HHeJ_T0067443.1 MGP_C3HHeJ_G0028472.1 mouse_genomes_project 4 126341077 126352162 + Trappc3 protein_coding processed_transcript MGP_C3HHeJ_T0067238.1 MGP_C3HHeJ_G0028422.1 mouse_genomes_project 4 122004434 122007232 - MGP_C3HHeJ_P0067238 Gm12886 protein_coding protein_coding MGP_C3HHeJ_T0010487.1 MGP_C3HHeJ_G0008620.1 mouse_genomes_project 4 7896889 7897022 + Mir684-2 miRNA miRNA MGP_C3HHeJ_T0004485.1 MGP_C3HHeJ_G0003892.1 mouse_genomes_project 4 138780497 138782079 - Gm13012 antisense antisense MGP_C3HHeJ_T0004486.1 MGP_C3HHeJ_G0003892.1 mouse_genomes_project 4 138780497 138781565 - Gm13012 antisense antisense MGP_C3HHeJ_T0004487.1 MGP_C3HHeJ_G0003892.1 mouse_genomes_project 4 138780497 138782090 - Gm13012 antisense antisense MGP_C3HHeJ_T0004357.1 MGP_C3HHeJ_G0003793.1 mouse_genomes_project 4 26079196 26080338 - Gm11915 antisense antisense MGP_C3HHeJ_T0100647.1 MGP_C3HHeJ_G0038841.1 mouse_genomes_project 4 82452363 82452482 + Gm24884 snoRNA snoRNA MGP_C3HHeJ_T0066512.1 MGP_C3HHeJ_G0028256.1 mouse_genomes_project 4 108882376 108945417 + MGP_C3HHeJ_P0066512 3110021N24Rik protein_coding protein_coding MGP_C3HHeJ_T0066583.1 MGP_C3HHeJ_G0028268.1 mouse_genomes_project 4 109712382 109741773 - MGP_C3HHeJ_P0066583 4930522H14Rik protein_coding protein_coding MGP_C3HHeJ_T0066584.1 MGP_C3HHeJ_G0028268.1 mouse_genomes_project 4 109712410 109741680 - MGP_C3HHeJ_P0066584 4930522H14Rik protein_coding protein_coding MGP_C3HHeJ_T0066753.1 MGP_C3HHeJ_G0028311.1 mouse_genomes_project 4 116415510 116438143 - MGP_C3HHeJ_P0066753 protein_coding protein_coding MGP_C3HHeJ_T0066754.1 MGP_C3HHeJ_G0028311.1 mouse_genomes_project 4 116415673 116431685 - MGP_C3HHeJ_P0066754 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066755.1 MGP_C3HHeJ_G0028311.1 mouse_genomes_project 4 116416575 116437647 - MGP_C3HHeJ_P0066755 protein_coding protein_coding MGP_C3HHeJ_T0066756.1 MGP_C3HHeJ_G0028311.1 mouse_genomes_project 4 116424543 116430155 - protein_coding processed_transcript MGP_C3HHeJ_T0066757.1 MGP_C3HHeJ_G0028311.1 mouse_genomes_project 4 116429029 116431554 - protein_coding retained_intron MGP_C3HHeJ_T0066758.1 MGP_C3HHeJ_G0028311.1 mouse_genomes_project 4 116431654 116432591 - protein_coding processed_transcript MGP_C3HHeJ_T0014528.1 MGP_C3HHeJ_G0012632.1 mouse_genomes_project 4 107798427 107798978 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065551.1 MGP_C3HHeJ_G0028038.1 mouse_genomes_project 4 58351625 58393771 + MGP_C3HHeJ_P0065551 Hsdl2 protein_coding protein_coding MGP_C3HHeJ_T0065552.1 MGP_C3HHeJ_G0028038.1 mouse_genomes_project 4 58351707 58393770 + MGP_C3HHeJ_P0065552 Hsdl2 protein_coding protein_coding MGP_C3HHeJ_T0065553.1 MGP_C3HHeJ_G0028038.1 mouse_genomes_project 4 58367253 58374394 + MGP_C3HHeJ_P0065553 Hsdl2 protein_coding protein_coding MGP_C3HHeJ_T0066842.1 MGP_C3HHeJ_G0028328.1 mouse_genomes_project 4 117119903 117126944 - MGP_C3HHeJ_P0066842 Mmachc protein_coding protein_coding MGP_C3HHeJ_T0066843.1 MGP_C3HHeJ_G0028328.1 mouse_genomes_project 4 117123225 117126826 - Mmachc protein_coding processed_transcript MGP_C3HHeJ_T0065190.1 MGP_C3HHeJ_G0027941.1 mouse_genomes_project 4 43572639 43591198 + MGP_C3HHeJ_P0065190 Trmt10b protein_coding protein_coding MGP_C3HHeJ_T0065191.1 MGP_C3HHeJ_G0027941.1 mouse_genomes_project 4 43572667 43579904 + MGP_C3HHeJ_P0065191 Trmt10b protein_coding protein_coding MGP_C3HHeJ_T0065192.1 MGP_C3HHeJ_G0027941.1 mouse_genomes_project 4 43575929 43584821 + Trmt10b protein_coding processed_transcript MGP_C3HHeJ_T0065193.1 MGP_C3HHeJ_G0027941.1 mouse_genomes_project 4 43575949 43590209 + Trmt10b protein_coding processed_transcript MGP_C3HHeJ_T0065194.1 MGP_C3HHeJ_G0027941.1 mouse_genomes_project 4 43575949 43579901 + Trmt10b protein_coding processed_transcript MGP_C3HHeJ_T0065195.1 MGP_C3HHeJ_G0027941.1 mouse_genomes_project 4 43575949 43590209 + MGP_C3HHeJ_P0065195 Trmt10b protein_coding protein_coding MGP_C3HHeJ_T0065196.1 MGP_C3HHeJ_G0027941.1 mouse_genomes_project 4 43589164 43590115 + Trmt10b protein_coding processed_transcript MGP_C3HHeJ_T0010486.1 MGP_C3HHeJ_G0008619.1 mouse_genomes_project 4 7612613 7612720 + n-TSaga9 miRNA miRNA MGP_C3HHeJ_T0065752.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80625681 80794782 - MGP_C3HHeJ_P0065752 Mpdz protein_coding protein_coding MGP_C3HHeJ_T0065753.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80625686 80794784 - MGP_C3HHeJ_P0065753 Mpdz protein_coding protein_coding MGP_C3HHeJ_T0065754.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80625686 80682393 - MGP_C3HHeJ_P0065754 Mpdz protein_coding protein_coding MGP_C3HHeJ_T0065755.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80625697 80794678 - MGP_C3HHeJ_P0065755 Mpdz protein_coding unknown_likely_coding MGP_C3HHeJ_T0065756.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80626416 80632719 - Mpdz protein_coding retained_intron MGP_C3HHeJ_T0065757.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80626519 80642761 - MGP_C3HHeJ_P0065757 Mpdz protein_coding protein_coding MGP_C3HHeJ_T0065758.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80630170 80631880 - Mpdz protein_coding retained_intron MGP_C3HHeJ_T0065759.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80630554 80639789 - MGP_C3HHeJ_P0065759 Mpdz protein_coding protein_coding MGP_C3HHeJ_T0065760.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80631757 80635252 - Mpdz protein_coding retained_intron MGP_C3HHeJ_T0065761.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80637068 80640006 - Mpdz protein_coding retained_intron MGP_C3HHeJ_T0065762.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80639735 80640351 - Mpdz protein_coding retained_intron MGP_C3HHeJ_T0065763.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80653964 80667688 - MGP_C3HHeJ_P0065763 Mpdz protein_coding protein_coding MGP_C3HHeJ_T0065764.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80667510 80679562 - MGP_C3HHeJ_P0065764 Mpdz protein_coding protein_coding MGP_C3HHeJ_T0065765.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80667532 80682351 - MGP_C3HHeJ_P0065765 Mpdz protein_coding protein_coding MGP_C3HHeJ_T0065766.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80701909 80716513 - MGP_C3HHeJ_P0065766 Mpdz protein_coding protein_coding MGP_C3HHeJ_T0065767.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80762896 80794792 - Mpdz protein_coding retained_intron MGP_C3HHeJ_T0066370.1 MGP_C3HHeJ_G0028233.1 mouse_genomes_project 4 107402250 107418291 - MGP_C3HHeJ_P0066370 Dio1 protein_coding protein_coding MGP_C3HHeJ_T0066371.1 MGP_C3HHeJ_G0028233.1 mouse_genomes_project 4 107402952 107418264 - MGP_C3HHeJ_P0066371 Dio1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066372.1 MGP_C3HHeJ_G0028233.1 mouse_genomes_project 4 107403115 107418246 - MGP_C3HHeJ_P0066372 Dio1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066373.1 MGP_C3HHeJ_G0028233.1 mouse_genomes_project 4 107403119 107418246 - MGP_C3HHeJ_P0066373 Dio1 protein_coding protein_coding MGP_C3HHeJ_T0066374.1 MGP_C3HHeJ_G0028233.1 mouse_genomes_project 4 107403149 107418240 - MGP_C3HHeJ_P0066374 Dio1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066375.1 MGP_C3HHeJ_G0028233.1 mouse_genomes_project 4 107403149 107418240 - MGP_C3HHeJ_P0066375 Dio1 protein_coding protein_coding MGP_C3HHeJ_T0066376.1 MGP_C3HHeJ_G0028233.1 mouse_genomes_project 4 107403149 107418240 - MGP_C3HHeJ_P0066376 Dio1 protein_coding protein_coding MGP_C3HHeJ_T0066377.1 MGP_C3HHeJ_G0028233.1 mouse_genomes_project 4 107410958 107418188 - Dio1 protein_coding processed_transcript MGP_C3HHeJ_T0068517.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140184713 140271638 + MGP_C3HHeJ_P0068517 Capzb protein_coding protein_coding MGP_C3HHeJ_T0068518.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140184715 140283303 + MGP_C3HHeJ_P0068518 Capzb protein_coding protein_coding MGP_C3HHeJ_T0068519.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140184730 140230578 + Capzb protein_coding retained_intron MGP_C3HHeJ_T0068520.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140184760 140283359 + Capzb protein_coding processed_transcript MGP_C3HHeJ_T0068521.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140184817 140282634 + MGP_C3HHeJ_P0068521 Capzb protein_coding protein_coding MGP_C3HHeJ_T0068522.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140185787 140282984 + MGP_C3HHeJ_P0068522 Capzb protein_coding protein_coding MGP_C3HHeJ_T0068523.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140185902 140230838 + Capzb protein_coding retained_intron MGP_C3HHeJ_T0068524.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140191068 140253466 + MGP_C3HHeJ_P0068524 Capzb protein_coding protein_coding MGP_C3HHeJ_T0068525.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140218433 140278635 + MGP_C3HHeJ_P0068525 Capzb protein_coding protein_coding MGP_C3HHeJ_T0068526.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140280490 140281360 + Capzb protein_coding processed_transcript MGP_C3HHeJ_T0068798.1 MGP_C3HHeJ_G0028801.1 mouse_genomes_project 4 146413061 146439708 + Dhrs3 protein_coding processed_transcript MGP_C3HHeJ_T0068799.1 MGP_C3HHeJ_G0028801.1 mouse_genomes_project 4 146413067 146439634 + MGP_C3HHeJ_P0068799 Dhrs3 protein_coding protein_coding MGP_C3HHeJ_T0068800.1 MGP_C3HHeJ_G0028801.1 mouse_genomes_project 4 146413149 146447753 + MGP_C3HHeJ_P0068800 Dhrs3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068801.1 MGP_C3HHeJ_G0028801.1 mouse_genomes_project 4 146413445 146447763 + MGP_C3HHeJ_P0068801 Dhrs3 protein_coding protein_coding MGP_C3HHeJ_T0068802.1 MGP_C3HHeJ_G0028801.1 mouse_genomes_project 4 146438610 146439708 + Dhrs3 protein_coding retained_intron MGP_C3HHeJ_T0010536.1 MGP_C3HHeJ_G0008669.1 mouse_genomes_project 4 124748540 124748649 + Mir698 miRNA miRNA MGP_C3HHeJ_T0064681.1 MGP_C3HHeJ_G0027837.1 mouse_genomes_project 4 37360041 37361523 + MGP_C3HHeJ_P0064681 1700009N14Rik protein_coding protein_coding MGP_C3HHeJ_T0068783.1 MGP_C3HHeJ_G0028787.1 mouse_genomes_project 4 145839290 145841037 + MGP_C3HHeJ_P0068783 protein_coding protein_coding MGP_C3HHeJ_T0065039.1 MGP_C3HHeJ_G0027911.1 mouse_genomes_project 4 41745869 41750590 + MGP_C3HHeJ_P0065039 Creb3 protein_coding protein_coding MGP_C3HHeJ_T0065040.1 MGP_C3HHeJ_G0027911.1 mouse_genomes_project 4 41746349 41750327 + MGP_C3HHeJ_P0065040 Creb3 protein_coding protein_coding MGP_C3HHeJ_T0065041.1 MGP_C3HHeJ_G0027911.1 mouse_genomes_project 4 41746483 41748849 + MGP_C3HHeJ_P0065041 Creb3 protein_coding protein_coding MGP_C3HHeJ_T0065042.1 MGP_C3HHeJ_G0027911.1 mouse_genomes_project 4 41746803 41750057 + Creb3 protein_coding retained_intron MGP_C3HHeJ_T0065043.1 MGP_C3HHeJ_G0027911.1 mouse_genomes_project 4 41746966 41749083 + Creb3 protein_coding retained_intron MGP_C3HHeJ_T0065044.1 MGP_C3HHeJ_G0027911.1 mouse_genomes_project 4 41749544 41750234 + Creb3 protein_coding retained_intron MGP_C3HHeJ_T0100633.1 MGP_C3HHeJ_G0038827.1 mouse_genomes_project 4 55522701 55522833 - Gm25053 snoRNA snoRNA MGP_C3HHeJ_T0067505.1 MGP_C3HHeJ_G0028486.1 mouse_genomes_project 4 127143689 127154737 + MGP_C3HHeJ_P0067505 Sfpq protein_coding protein_coding MGP_C3HHeJ_T0067506.1 MGP_C3HHeJ_G0028486.1 mouse_genomes_project 4 127145748 127149684 + Sfpq protein_coding processed_transcript MGP_C3HHeJ_T0067507.1 MGP_C3HHeJ_G0028486.1 mouse_genomes_project 4 127145892 127160501 + Sfpq protein_coding processed_transcript MGP_C3HHeJ_T0067508.1 MGP_C3HHeJ_G0028486.1 mouse_genomes_project 4 127148291 127148982 + Sfpq protein_coding processed_transcript MGP_C3HHeJ_T0067509.1 MGP_C3HHeJ_G0028486.1 mouse_genomes_project 4 127148323 127150383 + Sfpq protein_coding processed_transcript MGP_C3HHeJ_T0067510.1 MGP_C3HHeJ_G0028486.1 mouse_genomes_project 4 127148812 127149917 + Sfpq protein_coding processed_transcript MGP_C3HHeJ_T0069345.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157280906 157308709 - MGP_C3HHeJ_P0069345 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069346.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157280917 157293980 - Plch2 protein_coding retained_intron MGP_C3HHeJ_T0069347.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157281158 157304732 - MGP_C3HHeJ_P0069347 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069348.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157281158 157287609 - MGP_C3HHeJ_P0069348 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069349.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157281158 157317179 - MGP_C3HHeJ_P0069349 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069350.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157281164 157290437 - Plch2 protein_coding retained_intron MGP_C3HHeJ_T0069351.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157281168 157308709 - MGP_C3HHeJ_P0069351 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069352.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157281453 157340802 - MGP_C3HHeJ_P0069352 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069353.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157283490 157352403 - MGP_C3HHeJ_P0069353 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069354.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157295959 157308709 - MGP_C3HHeJ_P0069354 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069355.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157304795 157354126 - MGP_C3HHeJ_P0069355 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069356.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157306801 157317175 - MGP_C3HHeJ_P0069356 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069259.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156291310 156296457 - MGP_C3HHeJ_P0069259 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069260.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156291428 156296753 - MGP_C3HHeJ_P0069260 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069261.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156291428 156296807 - MGP_C3HHeJ_P0069261 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069262.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156292296 156297071 - MGP_C3HHeJ_P0069262 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069263.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156292301 156296993 - MGP_C3HHeJ_P0069263 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069264.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156294150 156296777 - MGP_C3HHeJ_P0069264 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069265.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156294150 156296708 - MGP_C3HHeJ_P0069265 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069266.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156294150 156296457 - MGP_C3HHeJ_P0069266 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069267.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156294151 156295196 - MGP_C3HHeJ_P0069267 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069268.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156294151 156296991 - MGP_C3HHeJ_P0069268 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069269.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156294421 156296878 - MGP_C3HHeJ_P0069269 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069270.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156294539 156296504 - MGP_C3HHeJ_P0069270 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069271.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156294564 156295164 - MGP_C3HHeJ_P0069271 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069272.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156296146 156296753 - Smim1 protein_coding processed_transcript MGP_C3HHeJ_T0068253.1 MGP_C3HHeJ_G0028644.1 mouse_genomes_project 4 136387463 136409182 + MGP_C3HHeJ_P0068253 Ifnlr1 protein_coding protein_coding MGP_C3HHeJ_T0065357.1 MGP_C3HHeJ_G0027985.1 mouse_genomes_project 4 48059746 48073085 - MGP_C3HHeJ_P0065357 Tmem246 protein_coding protein_coding MGP_C3HHeJ_T0065358.1 MGP_C3HHeJ_G0027985.1 mouse_genomes_project 4 48062006 48072679 - MGP_C3HHeJ_P0065358 Tmem246 protein_coding protein_coding MGP_C3HHeJ_T0065359.1 MGP_C3HHeJ_G0027985.1 mouse_genomes_project 4 48062292 48069131 - MGP_C3HHeJ_P0065359 Tmem246 protein_coding protein_coding MGP_C3HHeJ_T0004346.1 MGP_C3HHeJ_G0003784.1 mouse_genomes_project 4 6167987 6181755 - Gm11817 antisense antisense MGP_C3HHeJ_T0067450.1 MGP_C3HHeJ_G0028475.1 mouse_genomes_project 4 126405207 126408775 - MGP_C3HHeJ_P0067450 Tekt2 protein_coding protein_coding MGP_C3HHeJ_T0067451.1 MGP_C3HHeJ_G0028475.1 mouse_genomes_project 4 126405209 126408286 - MGP_C3HHeJ_P0067451 Tekt2 protein_coding protein_coding MGP_C3HHeJ_T0067452.1 MGP_C3HHeJ_G0028475.1 mouse_genomes_project 4 126406794 126408717 - Tekt2 protein_coding retained_intron MGP_C3HHeJ_T0067453.1 MGP_C3HHeJ_G0028475.1 mouse_genomes_project 4 126407426 126408730 - MGP_C3HHeJ_P0067453 Tekt2 protein_coding protein_coding MGP_C3HHeJ_T0067454.1 MGP_C3HHeJ_G0028475.1 mouse_genomes_project 4 126407970 126408522 - MGP_C3HHeJ_P0067454 Tekt2 protein_coding protein_coding MGP_C3HHeJ_T0068662.1 MGP_C3HHeJ_G0028743.1 mouse_genomes_project 4 142537857 142549853 - MGP_C3HHeJ_P0068662 Clcnkb protein_coding protein_coding MGP_C3HHeJ_T0068663.1 MGP_C3HHeJ_G0028743.1 mouse_genomes_project 4 142537857 142549853 - MGP_C3HHeJ_P0068663 Clcnkb protein_coding protein_coding MGP_C3HHeJ_T0068664.1 MGP_C3HHeJ_G0028743.1 mouse_genomes_project 4 142537857 142538862 - MGP_C3HHeJ_P0068664 Clcnkb protein_coding protein_coding MGP_C3HHeJ_T0068665.1 MGP_C3HHeJ_G0028743.1 mouse_genomes_project 4 142548134 142549800 - Clcnkb protein_coding processed_transcript MGP_C3HHeJ_T0007931.1 MGP_C3HHeJ_G0006467.1 mouse_genomes_project 4 141986127 141992766 + 4930515B02Rik lincRNA lincRNA MGP_C3HHeJ_T0068750.1 MGP_C3HHeJ_G0028765.1 mouse_genomes_project 4 144606570 144628885 + MGP_C3HHeJ_P0068750 Lrrc38 protein_coding protein_coding MGP_C3HHeJ_T0007726.1 MGP_C3HHeJ_G0006309.1 mouse_genomes_project 4 16733446 16736601 - Gm12354 lincRNA lincRNA MGP_C3HHeJ_T0007727.1 MGP_C3HHeJ_G0006309.1 mouse_genomes_project 4 16733446 16736914 - Gm12354 lincRNA lincRNA MGP_C3HHeJ_T0067267.1 MGP_C3HHeJ_G0028432.1 mouse_genomes_project 4 123031731 123044523 - MGP_C3HHeJ_P0067267 Ppie protein_coding protein_coding MGP_C3HHeJ_T0067268.1 MGP_C3HHeJ_G0028432.1 mouse_genomes_project 4 123031936 123041472 - Ppie protein_coding processed_transcript MGP_C3HHeJ_T0067269.1 MGP_C3HHeJ_G0028432.1 mouse_genomes_project 4 123032317 123043598 - Ppie protein_coding processed_transcript MGP_C3HHeJ_T0067270.1 MGP_C3HHeJ_G0028432.1 mouse_genomes_project 4 123040975 123044502 - Ppie protein_coding processed_transcript MGP_C3HHeJ_T0066327.1 MGP_C3HHeJ_G0028225.1 mouse_genomes_project 4 107154233 107166255 - MGP_C3HHeJ_P0066327 Mrpl37 protein_coding protein_coding MGP_C3HHeJ_T0066328.1 MGP_C3HHeJ_G0028225.1 mouse_genomes_project 4 107154244 107158310 - Mrpl37 protein_coding retained_intron MGP_C3HHeJ_T0066329.1 MGP_C3HHeJ_G0028225.1 mouse_genomes_project 4 107154327 107164157 - Mrpl37 protein_coding processed_transcript MGP_C3HHeJ_T0066330.1 MGP_C3HHeJ_G0028225.1 mouse_genomes_project 4 107154334 107166207 - Mrpl37 protein_coding processed_transcript MGP_C3HHeJ_T0066331.1 MGP_C3HHeJ_G0028225.1 mouse_genomes_project 4 107163782 107164744 - Mrpl37 protein_coding retained_intron MGP_C3HHeJ_T0067123.1 MGP_C3HHeJ_G0028393.1 mouse_genomes_project 4 119808190 119814802 - MGP_C3HHeJ_P0067123 Ybx1 protein_coding protein_coding MGP_C3HHeJ_T0067124.1 MGP_C3HHeJ_G0028393.1 mouse_genomes_project 4 119810007 119827992 - MGP_C3HHeJ_P0067124 Ybx1 protein_coding protein_coding MGP_C3HHeJ_T0067125.1 MGP_C3HHeJ_G0028393.1 mouse_genomes_project 4 119810142 119811426 - Ybx1 protein_coding processed_transcript MGP_C3HHeJ_T0067126.1 MGP_C3HHeJ_G0028393.1 mouse_genomes_project 4 119813152 119814196 - Ybx1 protein_coding processed_transcript MGP_C3HHeJ_T0067127.1 MGP_C3HHeJ_G0028393.1 mouse_genomes_project 4 119814282 119827878 - Ybx1 protein_coding processed_transcript MGP_C3HHeJ_T0067128.1 MGP_C3HHeJ_G0028393.1 mouse_genomes_project 4 119817011 119827868 - Ybx1 protein_coding processed_transcript MGP_C3HHeJ_T0067129.1 MGP_C3HHeJ_G0028393.1 mouse_genomes_project 4 119827010 119827888 - Ybx1 protein_coding processed_transcript MGP_C3HHeJ_T0007846.1 MGP_C3HHeJ_G0006408.1 mouse_genomes_project 4 114939066 114946002 + Gm12829 lincRNA lincRNA MGP_C3HHeJ_T0065352.1 MGP_C3HHeJ_G0027983.1 mouse_genomes_project 4 47992883 48007491 + MGP_C3HHeJ_P0065352 Zfp189 protein_coding protein_coding MGP_C3HHeJ_T0065353.1 MGP_C3HHeJ_G0027983.1 mouse_genomes_project 4 47992924 48007491 + MGP_C3HHeJ_P0065353 Zfp189 protein_coding protein_coding MGP_C3HHeJ_T0014658.1 MGP_C3HHeJ_G0012762.1 mouse_genomes_project 4 154344425 154344911 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007870.1 MGP_C3HHeJ_G0006424.1 mouse_genomes_project 4 127624034 127626059 + 4930471C06Rik lincRNA lincRNA MGP_C3HHeJ_T0007871.1 MGP_C3HHeJ_G0006424.1 mouse_genomes_project 4 127624120 127626059 + 4930471C06Rik lincRNA lincRNA MGP_C3HHeJ_T0065597.1 MGP_C3HHeJ_G0028053.1 mouse_genomes_project 4 61384149 61402210 + MGP_C3HHeJ_P0065597 Bspry protein_coding protein_coding MGP_C3HHeJ_T0065598.1 MGP_C3HHeJ_G0028053.1 mouse_genomes_project 4 61384149 61402210 + MGP_C3HHeJ_P0065598 Bspry protein_coding protein_coding MGP_C3HHeJ_T0065599.1 MGP_C3HHeJ_G0028053.1 mouse_genomes_project 4 61384185 61390514 + MGP_C3HHeJ_P0065599 Bspry protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068796.1 MGP_C3HHeJ_G0028799.1 mouse_genomes_project 4 146238296 146255743 - MGP_C3HHeJ_P0068796 Gm13178 protein_coding protein_coding MGP_C3HHeJ_T0064890.1 MGP_C3HHeJ_G0027893.1 mouse_genomes_project 4 41133701 41135428 + 1700022I11Rik protein_coding processed_transcript MGP_C3HHeJ_T0064891.1 MGP_C3HHeJ_G0027893.1 mouse_genomes_project 4 41133728 41135394 + MGP_C3HHeJ_P0064891 1700022I11Rik protein_coding protein_coding MGP_C3HHeJ_T0064892.1 MGP_C3HHeJ_G0027893.1 mouse_genomes_project 4 41134029 41135584 + MGP_C3HHeJ_P0064892 1700022I11Rik protein_coding protein_coding MGP_C3HHeJ_T0064893.1 MGP_C3HHeJ_G0027893.1 mouse_genomes_project 4 41134041 41149526 + MGP_C3HHeJ_P0064893 1700022I11Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064894.1 MGP_C3HHeJ_G0027893.1 mouse_genomes_project 4 41134041 41138422 + MGP_C3HHeJ_P0064894 1700022I11Rik protein_coding protein_coding MGP_C3HHeJ_T0069032.1 MGP_C3HHeJ_G0028850.1 mouse_genomes_project 4 152039794 152064486 - MGP_C3HHeJ_P0069032 H6pd protein_coding protein_coding MGP_C3HHeJ_T0069033.1 MGP_C3HHeJ_G0028850.1 mouse_genomes_project 4 152039794 152070059 - MGP_C3HHeJ_P0069033 H6pd protein_coding protein_coding MGP_C3HHeJ_T0069034.1 MGP_C3HHeJ_G0028850.1 mouse_genomes_project 4 152057212 152062621 - MGP_C3HHeJ_P0069034 H6pd protein_coding protein_coding MGP_C3HHeJ_T0069035.1 MGP_C3HHeJ_G0028850.1 mouse_genomes_project 4 152061140 152062646 - H6pd protein_coding processed_transcript MGP_C3HHeJ_T0014242.1 MGP_C3HHeJ_G0012346.1 mouse_genomes_project 4 7547667 7548853 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064785.1 MGP_C3HHeJ_G0027863.1 mouse_genomes_project 4 39550200 39619590 + MGP_C3HHeJ_P0064785 Dnaic1 protein_coding protein_coding MGP_C3HHeJ_T0064786.1 MGP_C3HHeJ_G0027863.1 mouse_genomes_project 4 39613074 39619590 + Dnaic1 protein_coding retained_intron MGP_C3HHeJ_T0064787.1 MGP_C3HHeJ_G0027863.1 mouse_genomes_project 4 39614779 39619590 + MGP_C3HHeJ_P0064787 Dnaic1 protein_coding protein_coding MGP_C3HHeJ_T0014403.1 MGP_C3HHeJ_G0012507.1 mouse_genomes_project 4 56113562 56115551 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099370.1 MGP_C3HHeJ_G0037564.1 mouse_genomes_project 4 101093057 101093161 + Gm24468 snRNA snRNA MGP_C3HHeJ_T0068569.1 MGP_C3HHeJ_G0028722.1 mouse_genomes_project 4 141080634 141318003 - MGP_C3HHeJ_P0068569 Igsf21 protein_coding protein_coding MGP_C3HHeJ_T0004366.1 MGP_C3HHeJ_G0003800.1 mouse_genomes_project 4 39623626 39624519 + Gm12405 antisense antisense MGP_C3HHeJ_T0069057.1 MGP_C3HHeJ_G0028856.1 mouse_genomes_project 4 152364389 152723407 + MGP_C3HHeJ_P0069057 Rere protein_coding protein_coding MGP_C3HHeJ_T0069058.1 MGP_C3HHeJ_G0028856.1 mouse_genomes_project 4 152364555 152365210 + Rere protein_coding processed_transcript MGP_C3HHeJ_T0069059.1 MGP_C3HHeJ_G0028856.1 mouse_genomes_project 4 152486271 152721379 + MGP_C3HHeJ_P0069059 Rere protein_coding unknown_likely_coding MGP_C3HHeJ_T0069060.1 MGP_C3HHeJ_G0028856.1 mouse_genomes_project 4 152494943 152560733 + MGP_C3HHeJ_P0069060 Rere protein_coding protein_coding MGP_C3HHeJ_T0069061.1 MGP_C3HHeJ_G0028856.1 mouse_genomes_project 4 152579635 152723413 + MGP_C3HHeJ_P0069061 Rere protein_coding protein_coding MGP_C3HHeJ_T0069062.1 MGP_C3HHeJ_G0028856.1 mouse_genomes_project 4 152671475 152672388 + Rere protein_coding processed_transcript MGP_C3HHeJ_T0069063.1 MGP_C3HHeJ_G0028856.1 mouse_genomes_project 4 152671544 152713953 + Rere protein_coding processed_transcript MGP_C3HHeJ_T0069064.1 MGP_C3HHeJ_G0028856.1 mouse_genomes_project 4 152719155 152721718 + MGP_C3HHeJ_P0069064 Rere protein_coding protein_coding MGP_C3HHeJ_T0066135.1 MGP_C3HHeJ_G0028181.1 mouse_genomes_project 4 100404187 100475130 + MGP_C3HHeJ_P0066135 Ube2u protein_coding protein_coding MGP_C3HHeJ_T0066136.1 MGP_C3HHeJ_G0028181.1 mouse_genomes_project 4 100404205 100475128 + MGP_C3HHeJ_P0066136 Ube2u protein_coding protein_coding MGP_C3HHeJ_T0098131.1 MGP_C3HHeJ_G0036343.1 mouse_genomes_project 4 52419837 52419956 + n-R5s185 rRNA rRNA MGP_C3HHeJ_T0068888.1 MGP_C3HHeJ_G0028824.1 mouse_genomes_project 4 150193345 150241761 - MGP_C3HHeJ_P0068888 Ptchd2 protein_coding protein_coding MGP_C3HHeJ_T0068889.1 MGP_C3HHeJ_G0028824.1 mouse_genomes_project 4 150211985 150214614 - Ptchd2 protein_coding retained_intron MGP_C3HHeJ_T0068890.1 MGP_C3HHeJ_G0028824.1 mouse_genomes_project 4 150213653 150215094 - Ptchd2 protein_coding processed_transcript MGP_C3HHeJ_T0014526.1 MGP_C3HHeJ_G0012630.1 mouse_genomes_project 4 107378157 107378593 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004370.1 MGP_C3HHeJ_G0003803.1 mouse_genomes_project 4 41773033 41795407 + Gm12472 antisense antisense MGP_C3HHeJ_T0010567.1 MGP_C3HHeJ_G0008700.1 mouse_genomes_project 4 151708082 151708146 - Mir7023 miRNA miRNA MGP_C3HHeJ_T0068762.1 MGP_C3HHeJ_G0028772.1 mouse_genomes_project 4 144936702 144944908 - MGP_C3HHeJ_P0068762 Oog3 protein_coding protein_coding MGP_C3HHeJ_T0102001.1 MGP_C3HHeJ_G0039966.1 mouse_genomes_project 4 96123137 96147161 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0066611.1 MGP_C3HHeJ_G0028274.1 mouse_genomes_project 4 111619397 111664505 + MGP_C3HHeJ_P0066611 Bend5 protein_coding protein_coding MGP_C3HHeJ_T0066612.1 MGP_C3HHeJ_G0028274.1 mouse_genomes_project 4 111619438 111637436 + Bend5 protein_coding processed_transcript MGP_C3HHeJ_T0066613.1 MGP_C3HHeJ_G0028274.1 mouse_genomes_project 4 111619479 111664127 + Bend5 protein_coding processed_transcript MGP_C3HHeJ_T0066614.1 MGP_C3HHeJ_G0028274.1 mouse_genomes_project 4 111619598 111624934 + Bend5 protein_coding processed_transcript MGP_C3HHeJ_T0066615.1 MGP_C3HHeJ_G0028274.1 mouse_genomes_project 4 111637386 111664503 + MGP_C3HHeJ_P0066615 Bend5 protein_coding protein_coding MGP_C3HHeJ_T0066616.1 MGP_C3HHeJ_G0028274.1 mouse_genomes_project 4 111637508 111664134 + Bend5 protein_coding processed_transcript MGP_C3HHeJ_T0064768.1 MGP_C3HHeJ_G0027859.1 mouse_genomes_project 4 39441882 39457658 + MGP_C3HHeJ_P0064768 Nudt2 protein_coding protein_coding MGP_C3HHeJ_T0014542.1 MGP_C3HHeJ_G0012646.1 mouse_genomes_project 4 112000421 112001415 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066378.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107425380 107474592 + MGP_C3HHeJ_P0066378 Yipf1 protein_coding protein_coding MGP_C3HHeJ_T0066379.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107425386 107432475 + Yipf1 protein_coding processed_transcript MGP_C3HHeJ_T0066380.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107425401 107463134 + MGP_C3HHeJ_P0066380 Yipf1 protein_coding protein_coding MGP_C3HHeJ_T0066381.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107425429 107456881 + MGP_C3HHeJ_P0066381 Yipf1 protein_coding protein_coding MGP_C3HHeJ_T0066382.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107425454 107430052 + MGP_C3HHeJ_P0066382 Yipf1 protein_coding protein_coding MGP_C3HHeJ_T0066383.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107426148 107426857 + Yipf1 protein_coding processed_transcript MGP_C3HHeJ_T0066384.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107426782 107456492 + Yipf1 protein_coding processed_transcript MGP_C3HHeJ_T0066385.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107430006 107474593 + Yipf1 protein_coding processed_transcript MGP_C3HHeJ_T0066386.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107435506 107448316 + Yipf1 protein_coding processed_transcript MGP_C3HHeJ_T0066387.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107454924 107464251 + Yipf1 protein_coding processed_transcript MGP_C3HHeJ_T0066388.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107456367 107474592 + Yipf1 protein_coding processed_transcript MGP_C3HHeJ_T0099341.1 MGP_C3HHeJ_G0037535.1 mouse_genomes_project 4 38994296 38994403 + Gm25637 snRNA snRNA MGP_C3HHeJ_T0067874.1 MGP_C3HHeJ_G0028558.1 mouse_genomes_project 4 132477426 132479722 + MGP_C3HHeJ_P0067874 Gm10300 protein_coding protein_coding MGP_C3HHeJ_T0069091.1 MGP_C3HHeJ_G0028862.1 mouse_genomes_project 4 153144780 153149498 + MGP_C3HHeJ_P0069091 Uts2 protein_coding protein_coding MGP_C3HHeJ_T0100621.1 MGP_C3HHeJ_G0038815.1 mouse_genomes_project 4 44832010 44832141 + Gm22247 snoRNA snoRNA MGP_C3HHeJ_T0001397.1 MGP_C3HHeJ_G0001327.1 mouse_genomes_project 4 154183929 154186790 - TEC TEC MGP_C3HHeJ_T0014630.1 MGP_C3HHeJ_G0012734.1 mouse_genomes_project 4 138035921 138036608 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007894.1 MGP_C3HHeJ_G0006441.1 mouse_genomes_project 4 132027544 132052848 - Gm12962 lincRNA lincRNA MGP_C3HHeJ_T0007895.1 MGP_C3HHeJ_G0006441.1 mouse_genomes_project 4 132027872 132058583 - Gm12962 lincRNA lincRNA MGP_C3HHeJ_T0067914.1 MGP_C3HHeJ_G0028567.1 mouse_genomes_project 4 132912867 132918063 - MGP_C3HHeJ_P0067914 Med18 protein_coding protein_coding MGP_C3HHeJ_T0067915.1 MGP_C3HHeJ_G0028567.1 mouse_genomes_project 4 132914096 132917473 - MGP_C3HHeJ_P0067915 Med18 protein_coding protein_coding MGP_C3HHeJ_T0010537.1 MGP_C3HHeJ_G0008670.1 mouse_genomes_project 4 126649889 126649948 + Mir7119 miRNA miRNA MGP_C3HHeJ_T0102022.1 MGP_C3HHeJ_G0039987.1 mouse_genomes_project 4 144663687 144664757 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0066935.1 MGP_C3HHeJ_G0028345.1 mouse_genomes_project 4 117730779 117754825 + MGP_C3HHeJ_P0066935 Tmem53 protein_coding protein_coding MGP_C3HHeJ_T0066936.1 MGP_C3HHeJ_G0028345.1 mouse_genomes_project 4 117730868 117754759 + MGP_C3HHeJ_P0066936 Tmem53 protein_coding protein_coding MGP_C3HHeJ_T0066937.1 MGP_C3HHeJ_G0028345.1 mouse_genomes_project 4 117730870 117754827 + MGP_C3HHeJ_P0066937 Tmem53 protein_coding protein_coding MGP_C3HHeJ_T0066938.1 MGP_C3HHeJ_G0028345.1 mouse_genomes_project 4 117730890 117754141 + Tmem53 protein_coding processed_transcript MGP_C3HHeJ_T0066939.1 MGP_C3HHeJ_G0028345.1 mouse_genomes_project 4 117731168 117754825 + MGP_C3HHeJ_P0066939 Tmem53 protein_coding protein_coding MGP_C3HHeJ_T0066940.1 MGP_C3HHeJ_G0028345.1 mouse_genomes_project 4 117751615 117754827 + Tmem53 protein_coding processed_transcript MGP_C3HHeJ_T0014544.1 MGP_C3HHeJ_G0012648.1 mouse_genomes_project 4 112000424 112001415 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064366.1 MGP_C3HHeJ_G0027756.1 mouse_genomes_project 4 8576903 8635036 + MGP_C3HHeJ_P0064366 Cdh17 protein_coding protein_coding MGP_C3HHeJ_T0064367.1 MGP_C3HHeJ_G0027756.1 mouse_genomes_project 4 8576949 8628627 + MGP_C3HHeJ_P0064367 Cdh17 protein_coding protein_coding MGP_C3HHeJ_T0067076.1 MGP_C3HHeJ_G0028378.1 mouse_genomes_project 4 119318959 119342198 - MGP_C3HHeJ_P0067076 protein_coding protein_coding MGP_C3HHeJ_T0064715.1 MGP_C3HHeJ_G0027845.1 mouse_genomes_project 4 38657381 38680196 - MGP_C3HHeJ_P0064715 Smu1 protein_coding protein_coding MGP_C3HHeJ_T0064716.1 MGP_C3HHeJ_G0027845.1 mouse_genomes_project 4 38664379 38680156 - Smu1 protein_coding processed_transcript MGP_C3HHeJ_T0064717.1 MGP_C3HHeJ_G0027845.1 mouse_genomes_project 4 38676650 38680104 - Smu1 protein_coding processed_transcript MGP_C3HHeJ_T0064718.1 MGP_C3HHeJ_G0027845.1 mouse_genomes_project 4 38677962 38679671 - Smu1 protein_coding processed_transcript MGP_C3HHeJ_T0065017.1 MGP_C3HHeJ_G0027908.1 mouse_genomes_project 4 41686549 41692589 + MGP_C3HHeJ_P0065017 Car9 protein_coding protein_coding MGP_C3HHeJ_T0065018.1 MGP_C3HHeJ_G0027908.1 mouse_genomes_project 4 41686568 41693208 + Car9 protein_coding processed_transcript MGP_C3HHeJ_T0065019.1 MGP_C3HHeJ_G0027908.1 mouse_genomes_project 4 41686856 41692537 + MGP_C3HHeJ_P0065019 Car9 protein_coding protein_coding MGP_C3HHeJ_T0065020.1 MGP_C3HHeJ_G0027908.1 mouse_genomes_project 4 41687431 41688529 + Car9 protein_coding processed_transcript MGP_C3HHeJ_T0065021.1 MGP_C3HHeJ_G0027908.1 mouse_genomes_project 4 41688097 41688590 + Car9 protein_coding processed_transcript MGP_C3HHeJ_T0065022.1 MGP_C3HHeJ_G0027908.1 mouse_genomes_project 4 41688491 41691934 + Car9 protein_coding processed_transcript MGP_C3HHeJ_T0065023.1 MGP_C3HHeJ_G0027908.1 mouse_genomes_project 4 41691610 41692421 + Car9 protein_coding processed_transcript MGP_C3HHeJ_T0100603.1 MGP_C3HHeJ_G0038797.1 mouse_genomes_project 4 4514307 4514439 + Gm23860 snoRNA snoRNA MGP_C3HHeJ_T0065908.1 MGP_C3HHeJ_G0028115.1 mouse_genomes_project 4 87711829 87739097 + Focad protein_coding retained_intron MGP_C3HHeJ_T0065909.1 MGP_C3HHeJ_G0028115.1 mouse_genomes_project 4 87711830 88028307 + MGP_C3HHeJ_P0065909 Focad protein_coding protein_coding MGP_C3HHeJ_T0065910.1 MGP_C3HHeJ_G0028115.1 mouse_genomes_project 4 87711845 87802151 + Focad protein_coding retained_intron MGP_C3HHeJ_T0065911.1 MGP_C3HHeJ_G0028115.1 mouse_genomes_project 4 87738583 88028305 + MGP_C3HHeJ_P0065911 Focad protein_coding protein_coding MGP_C3HHeJ_T0065912.1 MGP_C3HHeJ_G0028115.1 mouse_genomes_project 4 87741718 87771665 + Focad protein_coding retained_intron MGP_C3HHeJ_T0065913.1 MGP_C3HHeJ_G0028115.1 mouse_genomes_project 4 87922144 87947645 + Focad protein_coding retained_intron MGP_C3HHeJ_T0065914.1 MGP_C3HHeJ_G0028115.1 mouse_genomes_project 4 87968560 88028310 + Focad protein_coding retained_intron MGP_C3HHeJ_T0065916.1 MGP_C3HHeJ_G0028115.1 mouse_genomes_project 4 88016821 88024519 + Focad protein_coding processed_transcript MGP_C3HHeJ_T0065917.1 MGP_C3HHeJ_G0028115.1 mouse_genomes_project 4 88017036 88028312 + MGP_C3HHeJ_P0065917 Focad protein_coding protein_coding MGP_C3HHeJ_T0064593.1 MGP_C3HHeJ_G0027815.1 mouse_genomes_project 4 30488236 30502143 + MGP_C3HHeJ_P0064593 Ube2j1 protein_coding protein_coding MGP_C3HHeJ_T0064594.1 MGP_C3HHeJ_G0027815.1 mouse_genomes_project 4 30488294 30509242 + MGP_C3HHeJ_P0064594 Ube2j1 protein_coding protein_coding MGP_C3HHeJ_T0068847.1 MGP_C3HHeJ_G0028816.1 mouse_genomes_project 4 149933899 149969425 - MGP_C3HHeJ_P0068847 Clcn6 protein_coding protein_coding MGP_C3HHeJ_T0068848.1 MGP_C3HHeJ_G0028816.1 mouse_genomes_project 4 149935790 149969417 - MGP_C3HHeJ_P0068848 Clcn6 protein_coding protein_coding MGP_C3HHeJ_T0068849.1 MGP_C3HHeJ_G0028816.1 mouse_genomes_project 4 149936245 149969374 - MGP_C3HHeJ_P0068849 Clcn6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068850.1 MGP_C3HHeJ_G0028816.1 mouse_genomes_project 4 149954094 149969367 - Clcn6 protein_coding processed_transcript MGP_C3HHeJ_T0068851.1 MGP_C3HHeJ_G0028816.1 mouse_genomes_project 4 149956062 149969166 - MGP_C3HHeJ_P0068851 Clcn6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014250.1 MGP_C3HHeJ_G0012354.1 mouse_genomes_project 4 8988401 8988807 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068108.1 MGP_C3HHeJ_G0028610.1 mouse_genomes_project 4 134704824 134723404 - MGP_C3HHeJ_P0068108 Cep85 protein_coding unknown_likely_coding MGP_C3HHeJ_T0068109.1 MGP_C3HHeJ_G0028610.1 mouse_genomes_project 4 134704832 134765268 - MGP_C3HHeJ_P0068109 Cep85 protein_coding protein_coding MGP_C3HHeJ_T0068110.1 MGP_C3HHeJ_G0028610.1 mouse_genomes_project 4 134704840 134765137 - MGP_C3HHeJ_P0068110 Cep85 protein_coding protein_coding MGP_C3HHeJ_T0068111.1 MGP_C3HHeJ_G0028610.1 mouse_genomes_project 4 134706069 134707546 - Cep85 protein_coding processed_transcript MGP_C3HHeJ_T0068112.1 MGP_C3HHeJ_G0028610.1 mouse_genomes_project 4 134707135 134715823 - Cep85 protein_coding retained_intron MGP_C3HHeJ_T0068113.1 MGP_C3HHeJ_G0028610.1 mouse_genomes_project 4 134735154 134737368 - Cep85 protein_coding retained_intron MGP_C3HHeJ_T0068114.1 MGP_C3HHeJ_G0028610.1 mouse_genomes_project 4 134738792 134739815 - Cep85 protein_coding processed_transcript MGP_C3HHeJ_T0068115.1 MGP_C3HHeJ_G0028610.1 mouse_genomes_project 4 134738988 134765241 - MGP_C3HHeJ_P0068115 Cep85 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068116.1 MGP_C3HHeJ_G0028610.1 mouse_genomes_project 4 134750254 134765207 - Cep85 protein_coding retained_intron MGP_C3HHeJ_T0068230.1 MGP_C3HHeJ_G0028639.1 mouse_genomes_project 4 136062740 136090588 - MGP_C3HHeJ_P0068230 Ncmap protein_coding protein_coding MGP_C3HHeJ_T0068231.1 MGP_C3HHeJ_G0028639.1 mouse_genomes_project 4 136062740 136078057 - MGP_C3HHeJ_P0068231 Ncmap protein_coding protein_coding MGP_C3HHeJ_T0068232.1 MGP_C3HHeJ_G0028639.1 mouse_genomes_project 4 136062740 136090557 - MGP_C3HHeJ_P0068232 Ncmap protein_coding protein_coding MGP_C3HHeJ_T0068233.1 MGP_C3HHeJ_G0028639.1 mouse_genomes_project 4 136062741 136078074 - MGP_C3HHeJ_P0068233 Ncmap protein_coding protein_coding MGP_C3HHeJ_T0068234.1 MGP_C3HHeJ_G0028639.1 mouse_genomes_project 4 136063395 136078047 - MGP_C3HHeJ_P0068234 Ncmap protein_coding protein_coding MGP_C3HHeJ_T0068235.1 MGP_C3HHeJ_G0028639.1 mouse_genomes_project 4 136063685 136067742 - Ncmap protein_coding processed_transcript MGP_C3HHeJ_T0068236.1 MGP_C3HHeJ_G0028639.1 mouse_genomes_project 4 136063820 136078074 - MGP_C3HHeJ_P0068236 Ncmap protein_coding protein_coding MGP_C3HHeJ_T0068237.1 MGP_C3HHeJ_G0028639.1 mouse_genomes_project 4 136065095 136090594 - MGP_C3HHeJ_P0068237 Ncmap protein_coding protein_coding MGP_C3HHeJ_T0069022.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151951588 152012450 - MGP_C3HHeJ_P0069022 Spsb1 protein_coding protein_coding MGP_C3HHeJ_T0069023.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151953272 151964988 - MGP_C3HHeJ_P0069023 Spsb1 protein_coding protein_coding MGP_C3HHeJ_T0069024.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151953519 151962461 - MGP_C3HHeJ_P0069024 Spsb1 protein_coding protein_coding MGP_C3HHeJ_T0069025.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151961678 152011212 - MGP_C3HHeJ_P0069025 Spsb1 protein_coding protein_coding MGP_C3HHeJ_T0069026.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151962162 151977671 - MGP_C3HHeJ_P0069026 Spsb1 protein_coding protein_coding MGP_C3HHeJ_T0069027.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151962166 151986705 - MGP_C3HHeJ_P0069027 Spsb1 protein_coding protein_coding MGP_C3HHeJ_T0069028.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151962171 152000072 - MGP_C3HHeJ_P0069028 Spsb1 protein_coding protein_coding MGP_C3HHeJ_T0069029.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151962220 152003565 - MGP_C3HHeJ_P0069029 Spsb1 protein_coding protein_coding MGP_C3HHeJ_T0069030.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151962313 152012450 - Spsb1 protein_coding processed_transcript MGP_C3HHeJ_T0069031.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151964736 152012438 - Spsb1 protein_coding processed_transcript MGP_C3HHeJ_T0068667.1 MGP_C3HHeJ_G0028745.1 mouse_genomes_project 4 142568638 142572072 - MGP_C3HHeJ_P0068667 Gm694 protein_coding protein_coding MGP_C3HHeJ_T0007773.1 MGP_C3HHeJ_G0006350.1 mouse_genomes_project 4 55945173 55952373 + Gm12536 lincRNA lincRNA MGP_C3HHeJ_T0069317.1 MGP_C3HHeJ_G0028900.1 mouse_genomes_project 4 156973495 156974930 - MGP_C3HHeJ_P0069317 Actrt2 protein_coding protein_coding MGP_C3HHeJ_T0068813.1 MGP_C3HHeJ_G0028803.1 mouse_genomes_project 4 146740580 146773687 - MGP_C3HHeJ_P0068813 Tnfrsf1b protein_coding protein_coding MGP_C3HHeJ_T0068814.1 MGP_C3HHeJ_G0028803.1 mouse_genomes_project 4 146752483 146773687 - MGP_C3HHeJ_P0068814 Tnfrsf1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014287.1 MGP_C3HHeJ_G0012391.1 mouse_genomes_project 4 19359857 19360363 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100627.1 MGP_C3HHeJ_G0038821.1 mouse_genomes_project 4 52567121 52567252 + Gm24177 snoRNA snoRNA MGP_C3HHeJ_T0014613.1 MGP_C3HHeJ_G0012717.1 mouse_genomes_project 4 133784894 133785349 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067225.1 MGP_C3HHeJ_G0028416.1 mouse_genomes_project 4 121556826 121606584 - MGP_C3HHeJ_P0067225 Smap2 protein_coding protein_coding MGP_C3HHeJ_T0067226.1 MGP_C3HHeJ_G0028416.1 mouse_genomes_project 4 121560394 121564213 - Smap2 protein_coding processed_transcript MGP_C3HHeJ_T0068383.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138471103 138483599 + MGP_C3HHeJ_P0068383 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068384.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138471488 138542610 + MGP_C3HHeJ_P0068384 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068385.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138471555 138542610 + MGP_C3HHeJ_P0068385 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068386.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138471555 138507882 + MGP_C3HHeJ_P0068386 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068387.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138471576 138507882 + MGP_C3HHeJ_P0068387 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068388.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138500937 138507882 + MGP_C3HHeJ_P0068388 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068389.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138502177 138505796 + Usp48 protein_coding processed_transcript MGP_C3HHeJ_T0068390.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138503621 138517123 + Usp48 protein_coding processed_transcript MGP_C3HHeJ_T0068391.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138505796 138517557 + MGP_C3HHeJ_P0068391 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068392.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138507753 138542616 + Usp48 protein_coding processed_transcript MGP_C3HHeJ_T0068393.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138517296 138539342 + MGP_C3HHeJ_P0068393 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068394.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138517367 138521392 + MGP_C3HHeJ_P0068394 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068395.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138517771 138537011 + MGP_C3HHeJ_P0068395 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068396.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138528328 138539335 + MGP_C3HHeJ_P0068396 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068397.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138528413 138536845 + MGP_C3HHeJ_P0068397 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068398.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138534295 138540418 + MGP_C3HHeJ_P0068398 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068399.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138541476 138542609 + Usp48 protein_coding processed_transcript MGP_C3HHeJ_T0099406.1 MGP_C3HHeJ_G0037600.1 mouse_genomes_project 4 146292732 146292898 - Gm25938 snRNA snRNA MGP_C3HHeJ_T0065059.1 MGP_C3HHeJ_G0027914.1 mouse_genomes_project 4 41767327 41768606 - MGP_C3HHeJ_P0065059 Msmp protein_coding protein_coding MGP_C3HHeJ_T0067240.1 MGP_C3HHeJ_G0028424.1 mouse_genomes_project 4 122716818 122739724 + MGP_C3HHeJ_P0067240 Ppt1 protein_coding protein_coding MGP_C3HHeJ_T0067241.1 MGP_C3HHeJ_G0028424.1 mouse_genomes_project 4 122716822 122729625 + MGP_C3HHeJ_P0067241 Ppt1 protein_coding protein_coding MGP_C3HHeJ_T0067242.1 MGP_C3HHeJ_G0028424.1 mouse_genomes_project 4 122716826 122739821 + MGP_C3HHeJ_P0067242 Ppt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067243.1 MGP_C3HHeJ_G0028424.1 mouse_genomes_project 4 122716830 122730908 + MGP_C3HHeJ_P0067243 Ppt1 protein_coding protein_coding MGP_C3HHeJ_T0007841.1 MGP_C3HHeJ_G0006404.1 mouse_genomes_project 4 107899416 107905825 + 4933424M12Rik lincRNA lincRNA MGP_C3HHeJ_T0007842.1 MGP_C3HHeJ_G0006404.1 mouse_genomes_project 4 107903520 107905825 + 4933424M12Rik lincRNA lincRNA MGP_C3HHeJ_T0064412.1 MGP_C3HHeJ_G0027767.1 mouse_genomes_project 4 11678825 11699165 - MGP_C3HHeJ_P0064412 protein_coding protein_coding MGP_C3HHeJ_T0064413.1 MGP_C3HHeJ_G0027767.1 mouse_genomes_project 4 11680333 11698973 - MGP_C3HHeJ_P0064413 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010563.1 MGP_C3HHeJ_G0008696.1 mouse_genomes_project 4 142477891 142477968 + Gm25690 miRNA miRNA MGP_C3HHeJ_T0102000.1 MGP_C3HHeJ_G0039965.1 mouse_genomes_project 4 96002147 96031382 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014320.1 MGP_C3HHeJ_G0012424.1 mouse_genomes_project 4 27559063 27559598 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004397.1 MGP_C3HHeJ_G0003828.1 mouse_genomes_project 4 87653131 87654632 + Gm12631 antisense antisense MGP_C3HHeJ_T0067525.1 MGP_C3HHeJ_G0028489.1 mouse_genomes_project 4 127255611 127261531 + MGP_C3HHeJ_P0067525 Tmem35b protein_coding protein_coding MGP_C3HHeJ_T0067526.1 MGP_C3HHeJ_G0028489.1 mouse_genomes_project 4 127257949 127261531 + MGP_C3HHeJ_P0067526 Tmem35b protein_coding protein_coding MGP_C3HHeJ_T0010485.1 MGP_C3HHeJ_G0008618.1 mouse_genomes_project 4 7582068 7582199 - Mir3471-1 miRNA miRNA MGP_C3HHeJ_T0065964.1 MGP_C3HHeJ_G0028140.1 mouse_genomes_project 4 91925110 91926028 - MGP_C3HHeJ_P0065964 Gm12666 protein_coding protein_coding MGP_C3HHeJ_T0014632.1 MGP_C3HHeJ_G0012736.1 mouse_genomes_project 4 140136860 140137470 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099396.1 MGP_C3HHeJ_G0037590.1 mouse_genomes_project 4 133008838 133008942 - Gm24762 snRNA snRNA MGP_C3HHeJ_T0064960.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41554313 41601096 + MGP_C3HHeJ_P0064960 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064961.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41554391 41588807 + MGP_C3HHeJ_P0064961 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064962.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41554404 41590201 + Rusc2 protein_coding processed_transcript MGP_C3HHeJ_T0064963.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41555777 41588851 + MGP_C3HHeJ_P0064963 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064964.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41555838 41588766 + MGP_C3HHeJ_P0064964 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064965.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41556610 41595927 + Rusc2 protein_coding processed_transcript MGP_C3HHeJ_T0064966.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41556663 41588904 + MGP_C3HHeJ_P0064966 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064967.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41574323 41601081 + Rusc2 protein_coding retained_intron MGP_C3HHeJ_T0064968.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41574338 41588750 + MGP_C3HHeJ_P0064968 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064969.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41579517 41601096 + MGP_C3HHeJ_P0064969 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064970.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41579584 41596463 + Rusc2 protein_coding processed_transcript MGP_C3HHeJ_T0064971.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41579639 41589190 + MGP_C3HHeJ_P0064971 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064972.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41580419 41595810 + MGP_C3HHeJ_P0064972 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064973.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41588706 41600657 + MGP_C3HHeJ_P0064973 Rusc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064974.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41588706 41601096 + MGP_C3HHeJ_P0064974 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064975.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41590448 41600373 + Rusc2 protein_coding processed_transcript MGP_C3HHeJ_T0064976.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41596499 41598381 + Rusc2 protein_coding retained_intron MGP_C3HHeJ_T0064977.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41597598 41598019 + Rusc2 protein_coding retained_intron MGP_C3HHeJ_T0067820.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131253527 131280376 + MGP_C3HHeJ_P0067820 Laptm5 protein_coding protein_coding MGP_C3HHeJ_T0067821.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131253710 131270198 + MGP_C3HHeJ_P0067821 Laptm5 protein_coding protein_coding MGP_C3HHeJ_T0067822.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131253716 131266575 + Laptm5 protein_coding processed_transcript MGP_C3HHeJ_T0067823.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131253722 131270201 + Laptm5 protein_coding processed_transcript MGP_C3HHeJ_T0067824.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131253723 131267874 + Laptm5 protein_coding processed_transcript MGP_C3HHeJ_T0067825.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131253760 131276949 + MGP_C3HHeJ_P0067825 Laptm5 protein_coding protein_coding MGP_C3HHeJ_T0067826.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131255870 131270219 + Laptm5 protein_coding processed_transcript MGP_C3HHeJ_T0067827.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131256068 131268361 + Laptm5 protein_coding processed_transcript MGP_C3HHeJ_T0067828.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131256351 131278361 + MGP_C3HHeJ_P0067828 Laptm5 protein_coding protein_coding MGP_C3HHeJ_T0067829.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131273554 131277233 + Laptm5 protein_coding processed_transcript MGP_C3HHeJ_T0011459.1 MGP_C3HHeJ_G0009592.1 mouse_genomes_project 4 8744211 8744527 + Gm22477 misc_RNA misc_RNA MGP_C3HHeJ_T0014458.1 MGP_C3HHeJ_G0012562.1 mouse_genomes_project 4 82003331 82003598 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067801.1 MGP_C3HHeJ_G0028547.1 mouse_genomes_project 4 130673215 130706371 + MGP_C3HHeJ_P0067801 Snrnp40 protein_coding protein_coding MGP_C3HHeJ_T0067802.1 MGP_C3HHeJ_G0028547.1 mouse_genomes_project 4 130673277 130691920 + Snrnp40 protein_coding processed_transcript MGP_C3HHeJ_T0067803.1 MGP_C3HHeJ_G0028547.1 mouse_genomes_project 4 130675710 130678516 + Snrnp40 protein_coding processed_transcript MGP_C3HHeJ_T0067804.1 MGP_C3HHeJ_G0028547.1 mouse_genomes_project 4 130701365 130704973 + Snrnp40 protein_coding processed_transcript MGP_C3HHeJ_T0065052.1 MGP_C3HHeJ_G0027913.1 mouse_genomes_project 4 41762828 41772448 + MGP_C3HHeJ_P0065052 Rgp1 protein_coding protein_coding MGP_C3HHeJ_T0065053.1 MGP_C3HHeJ_G0027913.1 mouse_genomes_project 4 41762848 41772446 + MGP_C3HHeJ_P0065053 Rgp1 protein_coding protein_coding MGP_C3HHeJ_T0065054.1 MGP_C3HHeJ_G0027913.1 mouse_genomes_project 4 41763067 41765035 + Rgp1 protein_coding processed_transcript MGP_C3HHeJ_T0065055.1 MGP_C3HHeJ_G0027913.1 mouse_genomes_project 4 41763071 41767242 + MGP_C3HHeJ_P0065055 Rgp1 protein_coding protein_coding MGP_C3HHeJ_T0065056.1 MGP_C3HHeJ_G0027913.1 mouse_genomes_project 4 41763096 41763734 + Rgp1 protein_coding retained_intron MGP_C3HHeJ_T0065057.1 MGP_C3HHeJ_G0027913.1 mouse_genomes_project 4 41763848 41765031 + Rgp1 protein_coding retained_intron MGP_C3HHeJ_T0065058.1 MGP_C3HHeJ_G0027913.1 mouse_genomes_project 4 41765325 41765832 + Rgp1 protein_coding retained_intron MGP_C3HHeJ_T0065797.1 MGP_C3HHeJ_G0028099.1 mouse_genomes_project 4 82806851 82849297 + MGP_C3HHeJ_P0065797 Snapc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065798.1 MGP_C3HHeJ_G0028099.1 mouse_genomes_project 4 82806851 82839606 + MGP_C3HHeJ_P0065798 Snapc3 protein_coding protein_coding MGP_C3HHeJ_T0065799.1 MGP_C3HHeJ_G0028099.1 mouse_genomes_project 4 82806858 82832799 + MGP_C3HHeJ_P0065799 Snapc3 protein_coding protein_coding MGP_C3HHeJ_T0065800.1 MGP_C3HHeJ_G0028099.1 mouse_genomes_project 4 82806871 82840299 + MGP_C3HHeJ_P0065800 Snapc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065801.1 MGP_C3HHeJ_G0028099.1 mouse_genomes_project 4 82806871 82854670 + MGP_C3HHeJ_P0065801 Snapc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065802.1 MGP_C3HHeJ_G0028099.1 mouse_genomes_project 4 82806876 82855127 + MGP_C3HHeJ_P0065802 Snapc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065803.1 MGP_C3HHeJ_G0028099.1 mouse_genomes_project 4 82840071 82854617 + Snapc3 protein_coding processed_transcript MGP_C3HHeJ_T0065804.1 MGP_C3HHeJ_G0028099.1 mouse_genomes_project 4 82840219 82853578 + Snapc3 protein_coding processed_transcript MGP_C3HHeJ_T0065811.1 MGP_C3HHeJ_G0028099.1 mouse_genomes_project 4 82851426 82854662 + Snapc3 protein_coding retained_intron MGP_C3HHeJ_T0068364.1 MGP_C3HHeJ_G0028670.1 mouse_genomes_project 4 137680181 137686102 - MGP_C3HHeJ_P0068364 C1qb protein_coding protein_coding MGP_C3HHeJ_T0064455.1 MGP_C3HHeJ_G0027787.1 mouse_genomes_project 4 17139758 17816525 - MGP_C3HHeJ_P0064455 Nkain3 protein_coding protein_coding MGP_C3HHeJ_T0064456.1 MGP_C3HHeJ_G0027787.1 mouse_genomes_project 4 17265676 17816820 - MGP_C3HHeJ_P0064456 Nkain3 protein_coding protein_coding MGP_C3HHeJ_T0017860.1 MGP_C3HHeJ_G0015332.1 mouse_genomes_project 4 119490795 119520279 + Gm12861 processed_transcript processed_transcript MGP_C3HHeJ_T0065573.1 MGP_C3HHeJ_G0028047.1 mouse_genomes_project 4 61201389 61232874 - Fkbp15 protein_coding processed_transcript MGP_C3HHeJ_T0065574.1 MGP_C3HHeJ_G0028047.1 mouse_genomes_project 4 61201389 61265321 - MGP_C3HHeJ_P0065574 Fkbp15 protein_coding protein_coding MGP_C3HHeJ_T0065575.1 MGP_C3HHeJ_G0028047.1 mouse_genomes_project 4 61210530 61265399 - MGP_C3HHeJ_P0065575 Fkbp15 protein_coding protein_coding MGP_C3HHeJ_T0065576.1 MGP_C3HHeJ_G0028047.1 mouse_genomes_project 4 61217884 61265345 - MGP_C3HHeJ_P0065576 Fkbp15 protein_coding protein_coding MGP_C3HHeJ_T0065577.1 MGP_C3HHeJ_G0028047.1 mouse_genomes_project 4 61219900 61265385 - MGP_C3HHeJ_P0065577 Fkbp15 protein_coding protein_coding MGP_C3HHeJ_T0065578.1 MGP_C3HHeJ_G0028047.1 mouse_genomes_project 4 61248333 61265320 - Fkbp15 protein_coding processed_transcript MGP_C3HHeJ_T0100636.1 MGP_C3HHeJ_G0038830.1 mouse_genomes_project 4 61860575 61860709 + Gm25391 snoRNA snoRNA MGP_C3HHeJ_T0010546.1 MGP_C3HHeJ_G0008679.1 mouse_genomes_project 4 133880965 133881054 + Mir5122 miRNA miRNA MGP_C3HHeJ_T0068846.1 MGP_C3HHeJ_G0028815.1 mouse_genomes_project 4 149930418 149931778 + MGP_C3HHeJ_P0068846 Nppa protein_coding protein_coding MGP_C3HHeJ_T0071328.1 MGP_C3HHeJ_G0029249.1 mouse_genomes_project 5 51813591 51862862 + Zcchc4 protein_coding processed_transcript MGP_C3HHeJ_T0071329.1 MGP_C3HHeJ_G0029249.1 mouse_genomes_project 5 51821212 51862605 + MGP_C3HHeJ_P0071329 Zcchc4 protein_coding protein_coding MGP_C3HHeJ_T0071330.1 MGP_C3HHeJ_G0029249.1 mouse_genomes_project 5 51821212 51863699 + MGP_C3HHeJ_P0071330 Zcchc4 protein_coding protein_coding MGP_C3HHeJ_T0071331.1 MGP_C3HHeJ_G0029249.1 mouse_genomes_project 5 51821244 51838324 + Zcchc4 protein_coding retained_intron MGP_C3HHeJ_T0071332.1 MGP_C3HHeJ_G0029249.1 mouse_genomes_project 5 51821274 51834255 + MGP_C3HHeJ_P0071332 Zcchc4 protein_coding protein_coding MGP_C3HHeJ_T0071333.1 MGP_C3HHeJ_G0029249.1 mouse_genomes_project 5 51821280 51834287 + Zcchc4 protein_coding processed_transcript MGP_C3HHeJ_T0071334.1 MGP_C3HHeJ_G0029249.1 mouse_genomes_project 5 51836185 51858218 + Zcchc4 protein_coding processed_transcript MGP_C3HHeJ_T0071335.1 MGP_C3HHeJ_G0029249.1 mouse_genomes_project 5 51842267 51854943 + Zcchc4 protein_coding retained_intron MGP_C3HHeJ_T0001585.1 MGP_C3HHeJ_G0001511.1 mouse_genomes_project 5 59323786 59326412 - TEC TEC MGP_C3HHeJ_T0001569.1 MGP_C3HHeJ_G0001495.1 mouse_genomes_project 5 56897465 56897620 + TEC TEC MGP_C3HHeJ_T0014837.1 MGP_C3HHeJ_G0012941.1 mouse_genomes_project 5 71966184 71966655 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074361.1 MGP_C3HHeJ_G0029841.1 mouse_genomes_project 5 133588169 133596312 - A330070K13Rik protein_coding antisense MGP_C3HHeJ_T0074362.1 MGP_C3HHeJ_G0029841.1 mouse_genomes_project 5 133588242 133596313 - MGP_C3HHeJ_P0074362 A330070K13Rik protein_coding protein_coding MGP_C3HHeJ_T0004606.1 MGP_C3HHeJ_G0003983.1 mouse_genomes_project 5 42138536 42146444 - Gm15866 antisense antisense MGP_C3HHeJ_T0004607.1 MGP_C3HHeJ_G0003983.1 mouse_genomes_project 5 42145959 42190120 - Gm15866 antisense antisense MGP_C3HHeJ_T0001644.1 MGP_C3HHeJ_G0001569.1 mouse_genomes_project 5 69283658 69283984 - TEC TEC MGP_C3HHeJ_T0098496.1 MGP_C3HHeJ_G0036701.1 mouse_genomes_project 5 93553514 93554752 + Gm20500 sense_intronic sense_intronic MGP_C3HHeJ_T0001777.1 MGP_C3HHeJ_G0001701.1 mouse_genomes_project 5 125725181 125731768 + TEC TEC MGP_C3HHeJ_T0073164.1 MGP_C3HHeJ_G0029628.1 mouse_genomes_project 5 116314152 116323072 + MGP_C3HHeJ_P0073164 Ung protein_coding protein_coding MGP_C3HHeJ_T0073165.1 MGP_C3HHeJ_G0029628.1 mouse_genomes_project 5 116314995 116322136 + MGP_C3HHeJ_P0073165 Ung protein_coding protein_coding MGP_C3HHeJ_T0073166.1 MGP_C3HHeJ_G0029628.1 mouse_genomes_project 5 116314995 116322138 + MGP_C3HHeJ_P0073166 Ung protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073167.1 MGP_C3HHeJ_G0029628.1 mouse_genomes_project 5 116315773 116322063 + MGP_C3HHeJ_P0073167 Ung protein_coding protein_coding MGP_C3HHeJ_T0073168.1 MGP_C3HHeJ_G0029628.1 mouse_genomes_project 5 116315845 116318934 + Ung protein_coding retained_intron MGP_C3HHeJ_T0102067.1 MGP_C3HHeJ_G0040032.1 mouse_genomes_project 5 156561196 156561284 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102059.1 MGP_C3HHeJ_G0040024.1 mouse_genomes_project 5 149238189 149240180 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008168.1 MGP_C3HHeJ_G0006647.1 mouse_genomes_project 5 107962459 107964905 + Gm32921 lincRNA lincRNA MGP_C3HHeJ_T0008323.1 MGP_C3HHeJ_G0006744.1 mouse_genomes_project 5 136831902 136889722 - Gm42624 lincRNA lincRNA MGP_C3HHeJ_T0070141.1 MGP_C3HHeJ_G0029049.1 mouse_genomes_project 5 22549531 22560674 - Smarcd3 protein_coding retained_intron MGP_C3HHeJ_T0070142.1 MGP_C3HHeJ_G0029049.1 mouse_genomes_project 5 22551336 22582638 - MGP_C3HHeJ_P0070142 Smarcd3 protein_coding protein_coding MGP_C3HHeJ_T0070143.1 MGP_C3HHeJ_G0029049.1 mouse_genomes_project 5 22551336 22560710 - MGP_C3HHeJ_P0070143 Smarcd3 protein_coding protein_coding MGP_C3HHeJ_T0070145.1 MGP_C3HHeJ_G0029049.1 mouse_genomes_project 5 22553409 22555564 - Smarcd3 protein_coding retained_intron MGP_C3HHeJ_T0070146.1 MGP_C3HHeJ_G0029049.1 mouse_genomes_project 5 22553878 22560633 - Smarcd3 protein_coding retained_intron MGP_C3HHeJ_T0070147.1 MGP_C3HHeJ_G0029049.1 mouse_genomes_project 5 22554449 22557657 - Smarcd3 protein_coding retained_intron MGP_C3HHeJ_T0070148.1 MGP_C3HHeJ_G0029049.1 mouse_genomes_project 5 22554460 22555704 - Smarcd3 protein_coding retained_intron MGP_C3HHeJ_T0070149.1 MGP_C3HHeJ_G0029049.1 mouse_genomes_project 5 22554581 22560598 - Smarcd3 protein_coding retained_intron MGP_C3HHeJ_T0070150.1 MGP_C3HHeJ_G0029049.1 mouse_genomes_project 5 22580773 22581384 - Smarcd3 protein_coding processed_transcript MGP_C3HHeJ_T0001623.1 MGP_C3HHeJ_G0001548.1 mouse_genomes_project 5 66315370 66317890 + TEC TEC MGP_C3HHeJ_T0001506.1 MGP_C3HHeJ_G0001433.1 mouse_genomes_project 5 43318302 43325481 - TEC TEC MGP_C3HHeJ_T0072618.1 MGP_C3HHeJ_G0029519.1 mouse_genomes_project 5 106514677 106583079 - MGP_C3HHeJ_P0072618 Gbp4 protein_coding protein_coding MGP_C3HHeJ_T0072622.1 MGP_C3HHeJ_G0029519.1 mouse_genomes_project 5 106582223 106632318 - MGP_C3HHeJ_P0072622 Gbp4 protein_coding protein_coding MGP_C3HHeJ_T0072623.1 MGP_C3HHeJ_G0029519.1 mouse_genomes_project 5 106604605 106630109 - MGP_C3HHeJ_P0072623 Gbp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072624.1 MGP_C3HHeJ_G0029519.1 mouse_genomes_project 5 106604605 106630109 - MGP_C3HHeJ_P0072624 Gbp4 protein_coding protein_coding MGP_C3HHeJ_T0072625.1 MGP_C3HHeJ_G0029519.1 mouse_genomes_project 5 106611814 106630067 - MGP_C3HHeJ_P0072625 Gbp4 protein_coding protein_coding MGP_C3HHeJ_T0072626.1 MGP_C3HHeJ_G0029519.1 mouse_genomes_project 5 106622727 106630074 - Gbp4 protein_coding retained_intron MGP_C3HHeJ_T0070787.1 MGP_C3HHeJ_G0029159.1 mouse_genomes_project 5 32576308 32577762 - Mxd4 protein_coding processed_transcript MGP_C3HHeJ_T0070788.1 MGP_C3HHeJ_G0029159.1 mouse_genomes_project 5 32576312 32590122 - MGP_C3HHeJ_P0070788 Mxd4 protein_coding protein_coding MGP_C3HHeJ_T0070789.1 MGP_C3HHeJ_G0029159.1 mouse_genomes_project 5 32578991 32590132 - MGP_C3HHeJ_P0070789 Mxd4 protein_coding protein_coding MGP_C3HHeJ_T0070790.1 MGP_C3HHeJ_G0029159.1 mouse_genomes_project 5 32582157 32586785 - Mxd4 protein_coding retained_intron MGP_C3HHeJ_T0074794.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140905495 140917474 - MGP_C3HHeJ_P0074794 Srrt protein_coding protein_coding MGP_C3HHeJ_T0074795.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140905502 140917466 - MGP_C3HHeJ_P0074795 Srrt protein_coding protein_coding MGP_C3HHeJ_T0074796.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140905506 140917466 - MGP_C3HHeJ_P0074796 Srrt protein_coding protein_coding MGP_C3HHeJ_T0074797.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140905508 140917227 - MGP_C3HHeJ_P0074797 Srrt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074798.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140905516 140909437 - MGP_C3HHeJ_P0074798 Srrt protein_coding protein_coding MGP_C3HHeJ_T0074799.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140905778 140907217 - MGP_C3HHeJ_P0074799 Srrt protein_coding protein_coding MGP_C3HHeJ_T0074800.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140905809 140906726 - Srrt protein_coding retained_intron MGP_C3HHeJ_T0074801.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140906027 140907009 - Srrt protein_coding retained_intron MGP_C3HHeJ_T0074802.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140906070 140906645 - Srrt protein_coding retained_intron MGP_C3HHeJ_T0074803.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140906258 140907359 - Srrt protein_coding retained_intron MGP_C3HHeJ_T0074804.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140907415 140908339 - Srrt protein_coding retained_intron MGP_C3HHeJ_T0074805.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140907623 140910110 - MGP_C3HHeJ_P0074805 Srrt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074806.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140907623 140909801 - MGP_C3HHeJ_P0074806 Srrt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074807.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140908050 140909678 - Srrt protein_coding retained_intron MGP_C3HHeJ_T0074808.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140909377 140917279 - Srrt protein_coding retained_intron MGP_C3HHeJ_T0074809.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140909664 140910523 - Srrt protein_coding retained_intron MGP_C3HHeJ_T0074810.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140912445 140917440 - MGP_C3HHeJ_P0074810 Srrt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001568.1 MGP_C3HHeJ_G0001494.1 mouse_genomes_project 5 56724206 56726862 + TEC TEC MGP_C3HHeJ_T0001679.1 MGP_C3HHeJ_G0001603.1 mouse_genomes_project 5 92739190 92740152 - TEC TEC MGP_C3HHeJ_T0014853.1 MGP_C3HHeJ_G0012957.1 mouse_genomes_project 5 77301639 77302212 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069945.1 MGP_C3HHeJ_G0029012.1 mouse_genomes_project 5 19078719 19084435 + MGP_C3HHeJ_P0069945 Fgl2 protein_coding protein_coding MGP_C3HHeJ_T0004651.1 MGP_C3HHeJ_G0004019.1 mouse_genomes_project 5 77475908 77483006 + Gm43261 antisense antisense MGP_C3HHeJ_T0070087.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22370035 22374781 + MGP_C3HHeJ_P0070087 Slc4a2 protein_coding protein_coding MGP_C3HHeJ_T0070088.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22370051 22377318 + Slc4a2 protein_coding processed_transcript MGP_C3HHeJ_T0070089.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22370057 22377051 + MGP_C3HHeJ_P0070089 Slc4a2 protein_coding protein_coding MGP_C3HHeJ_T0070090.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22372389 22389464 + MGP_C3HHeJ_P0070090 Slc4a2 protein_coding protein_coding MGP_C3HHeJ_T0070091.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22373999 22377021 + MGP_C3HHeJ_P0070091 Slc4a2 protein_coding protein_coding MGP_C3HHeJ_T0070092.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22375376 22389461 + MGP_C3HHeJ_P0070092 Slc4a2 protein_coding protein_coding MGP_C3HHeJ_T0070093.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22375431 22377007 + Slc4a2 protein_coding processed_transcript MGP_C3HHeJ_T0070094.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22375591 22389461 + MGP_C3HHeJ_P0070094 Slc4a2 protein_coding protein_coding MGP_C3HHeJ_T0070095.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22376186 22376948 + Slc4a2 protein_coding retained_intron MGP_C3HHeJ_T0070096.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22378504 22381521 + Slc4a2 protein_coding retained_intron MGP_C3HHeJ_T0070097.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22382713 22383656 + Slc4a2 protein_coding retained_intron MGP_C3HHeJ_T0070098.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22383928 22387770 + Slc4a2 protein_coding retained_intron MGP_C3HHeJ_T0070101.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22388259 22389086 + Slc4a2 protein_coding retained_intron MGP_C3HHeJ_T0014691.1 MGP_C3HHeJ_G0012795.1 mouse_genomes_project 5 13860785 13861569 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001752.1 MGP_C3HHeJ_G0001676.1 mouse_genomes_project 5 121070733 121071995 - TEC TEC MGP_C3HHeJ_T0072613.1 MGP_C3HHeJ_G0029517.1 mouse_genomes_project 5 106503739 106599258 - Gbp9 protein_coding retained_intron MGP_C3HHeJ_T0072619.1 MGP_C3HHeJ_G0029517.1 mouse_genomes_project 5 106572173 106599258 - MGP_C3HHeJ_P0072619 Gbp9 protein_coding protein_coding MGP_C3HHeJ_T0072620.1 MGP_C3HHeJ_G0029517.1 mouse_genomes_project 5 106573026 106630062 - MGP_C3HHeJ_P0072620 Gbp9 protein_coding protein_coding MGP_C3HHeJ_T0072621.1 MGP_C3HHeJ_G0029517.1 mouse_genomes_project 5 106573863 106576233 - Gbp9 protein_coding processed_transcript MGP_C3HHeJ_T0007995.1 MGP_C3HHeJ_G0006517.1 mouse_genomes_project 5 28026722 28031866 - Gm42450 lincRNA lincRNA MGP_C3HHeJ_T0100726.1 MGP_C3HHeJ_G0038920.1 mouse_genomes_project 5 112665893 112666026 - Gm26079 snoRNA snoRNA MGP_C3HHeJ_T0008297.1 MGP_C3HHeJ_G0006728.1 mouse_genomes_project 5 129823674 129826649 - Gm43754 lincRNA lincRNA MGP_C3HHeJ_T0070388.1 MGP_C3HHeJ_G0029099.1 mouse_genomes_project 5 29092921 29102739 + MGP_C3HHeJ_P0070388 Khk protein_coding protein_coding MGP_C3HHeJ_T0070389.1 MGP_C3HHeJ_G0029099.1 mouse_genomes_project 5 29093078 29102537 + MGP_C3HHeJ_P0070389 Khk protein_coding protein_coding MGP_C3HHeJ_T0070390.1 MGP_C3HHeJ_G0029099.1 mouse_genomes_project 5 29093321 29102680 + MGP_C3HHeJ_P0070390 Khk protein_coding protein_coding MGP_C3HHeJ_T0070391.1 MGP_C3HHeJ_G0029099.1 mouse_genomes_project 5 29093346 29102284 + MGP_C3HHeJ_P0070391 Khk protein_coding protein_coding MGP_C3HHeJ_T0070392.1 MGP_C3HHeJ_G0029099.1 mouse_genomes_project 5 29102104 29102736 + Khk protein_coding retained_intron MGP_C3HHeJ_T0011736.1 MGP_C3HHeJ_G0009845.1 mouse_genomes_project 5 93170287 93177257 - MGP_C3HHeJ_P0011736 Cxcl11 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0011737.1 MGP_C3HHeJ_G0009845.1 mouse_genomes_project 5 93170290 93174013 - MGP_C3HHeJ_P0011737 Cxcl11 polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0074596.1 MGP_C3HHeJ_G0029878.1 mouse_genomes_project 5 139024831 139029460 - MGP_C3HHeJ_P0074596 Ccl26 protein_coding protein_coding MGP_C3HHeJ_T0014792.1 MGP_C3HHeJ_G0012896.1 mouse_genomes_project 5 49895386 49895951 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100697.1 MGP_C3HHeJ_G0038891.1 mouse_genomes_project 5 56372494 56372617 + Gm24902 snoRNA snoRNA MGP_C3HHeJ_T0099452.1 MGP_C3HHeJ_G0037646.1 mouse_genomes_project 5 80461666 80461773 + Gm24304 snRNA snRNA MGP_C3HHeJ_T0073496.1 MGP_C3HHeJ_G0029690.1 mouse_genomes_project 5 120678807 120735648 - MGP_C3HHeJ_P0073496 Rnft2 protein_coding protein_coding MGP_C3HHeJ_T0073497.1 MGP_C3HHeJ_G0029690.1 mouse_genomes_project 5 120678813 120735903 - MGP_C3HHeJ_P0073497 Rnft2 protein_coding protein_coding MGP_C3HHeJ_T0073498.1 MGP_C3HHeJ_G0029690.1 mouse_genomes_project 5 120681702 120720065 - Rnft2 protein_coding retained_intron MGP_C3HHeJ_T0073499.1 MGP_C3HHeJ_G0029690.1 mouse_genomes_project 5 120682184 120692166 - MGP_C3HHeJ_P0073499 Rnft2 protein_coding protein_coding MGP_C3HHeJ_T0073500.1 MGP_C3HHeJ_G0029690.1 mouse_genomes_project 5 120724935 120735781 - MGP_C3HHeJ_P0073500 Rnft2 protein_coding protein_coding MGP_C3HHeJ_T0073501.1 MGP_C3HHeJ_G0029690.1 mouse_genomes_project 5 120727706 120733700 - Rnft2 protein_coding retained_intron MGP_C3HHeJ_T0073502.1 MGP_C3HHeJ_G0029690.1 mouse_genomes_project 5 120728284 120735779 - MGP_C3HHeJ_P0073502 Rnft2 protein_coding protein_coding MGP_C3HHeJ_T0001424.1 MGP_C3HHeJ_G0001354.1 mouse_genomes_project 5 12058187 12060860 + TEC TEC MGP_C3HHeJ_T0098505.1 MGP_C3HHeJ_G0036710.1 mouse_genomes_project 5 132939402 132940742 + Gm15903 sense_intronic sense_intronic MGP_C3HHeJ_T0098506.1 MGP_C3HHeJ_G0036710.1 mouse_genomes_project 5 132940528 132944036 + Gm15903 sense_intronic sense_intronic MGP_C3HHeJ_T0008138.1 MGP_C3HHeJ_G0006628.1 mouse_genomes_project 5 100945808 100968908 - Gm43248 lincRNA lincRNA MGP_C3HHeJ_T0008139.1 MGP_C3HHeJ_G0006628.1 mouse_genomes_project 5 100957364 100968446 - Gm43248 lincRNA lincRNA MGP_C3HHeJ_T0100688.1 MGP_C3HHeJ_G0038882.1 mouse_genomes_project 5 16454011 16454139 + Gm23822 snoRNA snoRNA MGP_C3HHeJ_T0001431.1 MGP_C3HHeJ_G0001361.1 mouse_genomes_project 5 14140152 14141643 + TEC TEC MGP_C3HHeJ_T0001422.1 MGP_C3HHeJ_G0001352.1 mouse_genomes_project 5 12014583 12017867 + TEC TEC MGP_C3HHeJ_T0069818.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6296770 6341139 - MGP_C3HHeJ_P0069818 Dmtf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069819.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6296774 6341169 - MGP_C3HHeJ_P0069819 Dmtf1 protein_coding protein_coding MGP_C3HHeJ_T0069820.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6296775 6341172 - MGP_C3HHeJ_P0069820 Dmtf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069821.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6296775 6341179 - MGP_C3HHeJ_P0069821 Dmtf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069822.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6296779 6341163 - MGP_C3HHeJ_P0069822 Dmtf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069823.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6296779 6331678 - MGP_C3HHeJ_P0069823 Dmtf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069824.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6296972 6341091 - MGP_C3HHeJ_P0069824 Dmtf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069825.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6297695 6298634 - Dmtf1 protein_coding retained_intron MGP_C3HHeJ_T0069826.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6297931 6330450 - MGP_C3HHeJ_P0069826 Dmtf1 protein_coding protein_coding MGP_C3HHeJ_T0069827.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6299356 6304480 - MGP_C3HHeJ_P0069827 Dmtf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069828.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6299960 6341163 - Dmtf1 protein_coding processed_transcript MGP_C3HHeJ_T0069829.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6307269 6341157 - Dmtf1 protein_coding retained_intron MGP_C3HHeJ_T0069830.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6309190 6341136 - MGP_C3HHeJ_P0069830 Dmtf1 protein_coding protein_coding MGP_C3HHeJ_T0069831.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6310461 6330575 - MGP_C3HHeJ_P0069831 Dmtf1 protein_coding protein_coding MGP_C3HHeJ_T0069832.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6318627 6341154 - Dmtf1 protein_coding retained_intron MGP_C3HHeJ_T0069833.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6324897 6341169 - Dmtf1 protein_coding retained_intron MGP_C3HHeJ_T0069834.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6328963 6331468 - MGP_C3HHeJ_P0069834 Dmtf1 protein_coding protein_coding MGP_C3HHeJ_T0070976.1 MGP_C3HHeJ_G0029187.1 mouse_genomes_project 5 34947268 34956274 + MGP_C3HHeJ_P0070976 Grpel1 protein_coding protein_coding MGP_C3HHeJ_T0070921.1 MGP_C3HHeJ_G0029178.1 mouse_genomes_project 5 33958538 33983050 - MGP_C3HHeJ_P0070921 Cpz protein_coding protein_coding MGP_C3HHeJ_T0070922.1 MGP_C3HHeJ_G0029178.1 mouse_genomes_project 5 33975064 33982926 - MGP_C3HHeJ_P0070922 Cpz protein_coding protein_coding MGP_C3HHeJ_T0014674.1 MGP_C3HHeJ_G0012778.1 mouse_genomes_project 5 5052104 5052396 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070045.1 MGP_C3HHeJ_G0029030.1 mouse_genomes_project 5 21742845 21748658 - MGP_C3HHeJ_P0070045 Tomm7 protein_coding protein_coding MGP_C3HHeJ_T0001552.1 MGP_C3HHeJ_G0001478.1 mouse_genomes_project 5 50489119 50491050 + TEC TEC MGP_C3HHeJ_T0098499.1 MGP_C3HHeJ_G0036704.1 mouse_genomes_project 5 107160868 107162193 + C230066G23Rik sense_intronic sense_intronic MGP_C3HHeJ_T0014993.1 MGP_C3HHeJ_G0013097.1 mouse_genomes_project 5 141708309 141708809 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075497.1 MGP_C3HHeJ_G0030062.1 mouse_genomes_project 5 149548240 149554205 + MGP_C3HHeJ_P0075497 protein_coding protein_coding MGP_C3HHeJ_T0075498.1 MGP_C3HHeJ_G0030062.1 mouse_genomes_project 5 149548346 149561731 + MGP_C3HHeJ_P0075498 protein_coding unknown_likely_coding MGP_C3HHeJ_T0075499.1 MGP_C3HHeJ_G0030062.1 mouse_genomes_project 5 149551094 149561849 + MGP_C3HHeJ_P0075499 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008363.1 MGP_C3HHeJ_G0006778.1 mouse_genomes_project 5 153461207 153462507 + 2210417A02Rik lincRNA lincRNA MGP_C3HHeJ_T0071542.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65614482 65700434 - MGP_C3HHeJ_P0071542 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071543.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65614482 65776315 - MGP_C3HHeJ_P0071543 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071544.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65614489 65683275 - MGP_C3HHeJ_P0071544 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071545.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65614490 65753944 - MGP_C3HHeJ_P0071545 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071546.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65616536 65753098 - MGP_C3HHeJ_P0071546 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071547.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65616536 65753098 - MGP_C3HHeJ_P0071547 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071548.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65616916 65683374 - MGP_C3HHeJ_P0071548 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071549.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65626450 65752976 - Rbm47 protein_coding retained_intron MGP_C3HHeJ_T0071550.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65627666 65655674 - MGP_C3HHeJ_P0071550 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071551.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65627909 65684265 - Rbm47 protein_coding processed_transcript MGP_C3HHeJ_T0071552.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65628101 65683259 - MGP_C3HHeJ_P0071552 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071553.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65628121 65753343 - MGP_C3HHeJ_P0071553 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071554.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65647378 65753808 - Rbm47 protein_coding processed_transcript MGP_C3HHeJ_T0071555.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65647493 65753802 - Rbm47 protein_coding processed_transcript MGP_C3HHeJ_T0074565.1 MGP_C3HHeJ_G0029871.1 mouse_genomes_project 5 138622997 138684005 + MGP_C3HHeJ_P0074565 Baz1b protein_coding protein_coding MGP_C3HHeJ_T0074566.1 MGP_C3HHeJ_G0029871.1 mouse_genomes_project 5 138633846 138636864 + Baz1b protein_coding retained_intron MGP_C3HHeJ_T0074567.1 MGP_C3HHeJ_G0029871.1 mouse_genomes_project 5 138642404 138649130 + Baz1b protein_coding retained_intron MGP_C3HHeJ_T0074568.1 MGP_C3HHeJ_G0029871.1 mouse_genomes_project 5 138645677 138655327 + Baz1b protein_coding retained_intron MGP_C3HHeJ_T0074569.1 MGP_C3HHeJ_G0029871.1 mouse_genomes_project 5 138680262 138682058 + Baz1b protein_coding retained_intron MGP_C3HHeJ_T0102064.1 MGP_C3HHeJ_G0040029.1 mouse_genomes_project 5 156333361 156358659 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0070724.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32107677 32115835 + MGP_C3HHeJ_P0070724 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070725.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32107727 32123066 + MGP_C3HHeJ_P0070725 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070726.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32107727 32123065 + MGP_C3HHeJ_P0070726 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070727.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32107727 32123066 + MGP_C3HHeJ_P0070727 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070728.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32107794 32123061 + MGP_C3HHeJ_P0070728 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070729.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32107801 32121605 + MGP_C3HHeJ_P0070729 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070730.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32108309 32123066 + MGP_C3HHeJ_P0070730 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070731.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32108309 32123066 + MGP_C3HHeJ_P0070731 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070732.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32108447 32116004 + MGP_C3HHeJ_P0070732 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070733.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32108823 32118788 + Fgfr3 protein_coding retained_intron MGP_C3HHeJ_T0070734.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32109775 32115848 + MGP_C3HHeJ_P0070734 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070735.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32115735 32118741 + MGP_C3HHeJ_P0070735 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070736.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32115961 32119281 + Fgfr3 protein_coding retained_intron MGP_C3HHeJ_T0070737.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32116218 32119759 + MGP_C3HHeJ_P0070737 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070738.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32119249 32120850 + MGP_C3HHeJ_P0070738 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070739.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32119689 32120911 + Fgfr3 protein_coding retained_intron MGP_C3HHeJ_T0070740.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32120602 32121562 + Fgfr3 protein_coding retained_intron MGP_C3HHeJ_T0001713.1 MGP_C3HHeJ_G0001637.1 mouse_genomes_project 5 108831868 108833953 - TEC TEC MGP_C3HHeJ_T0001464.1 MGP_C3HHeJ_G0001391.1 mouse_genomes_project 5 30735338 30737583 + TEC TEC MGP_C3HHeJ_T0071370.1 MGP_C3HHeJ_G0029255.1 mouse_genomes_project 5 52819553 52827242 - MGP_C3HHeJ_P0071370 Cckar protein_coding protein_coding MGP_C3HHeJ_T0071371.1 MGP_C3HHeJ_G0029255.1 mouse_genomes_project 5 52826232 52827445 - Cckar protein_coding processed_transcript MGP_C3HHeJ_T0008172.1 MGP_C3HHeJ_G0006651.1 mouse_genomes_project 5 108111929 108117140 - Gm26872 lincRNA lincRNA MGP_C3HHeJ_T0073047.1 MGP_C3HHeJ_G0029605.1 mouse_genomes_project 5 114474137 114635664 - MGP_C3HHeJ_P0073047 Sez6l protein_coding protein_coding MGP_C3HHeJ_T0073048.1 MGP_C3HHeJ_G0029605.1 mouse_genomes_project 5 114474142 114635771 - MGP_C3HHeJ_P0073048 Sez6l protein_coding protein_coding MGP_C3HHeJ_T0073049.1 MGP_C3HHeJ_G0029605.1 mouse_genomes_project 5 114474151 114635981 - MGP_C3HHeJ_P0073049 Sez6l protein_coding protein_coding MGP_C3HHeJ_T0073050.1 MGP_C3HHeJ_G0029605.1 mouse_genomes_project 5 114476805 114635973 - MGP_C3HHeJ_P0073050 Sez6l protein_coding protein_coding MGP_C3HHeJ_T0004726.1 MGP_C3HHeJ_G0004071.1 mouse_genomes_project 5 119540910 119544398 + 9530046B11Rik antisense antisense MGP_C3HHeJ_T0072062.1 MGP_C3HHeJ_G0029383.1 mouse_genomes_project 5 88015658 88039183 - MGP_C3HHeJ_P0072062 Ugt2a2 protein_coding protein_coding MGP_C3HHeJ_T0072064.1 MGP_C3HHeJ_G0029383.1 mouse_genomes_project 5 88016527 88039185 - MGP_C3HHeJ_P0072064 Ugt2a2 protein_coding protein_coding MGP_C3HHeJ_T0014943.1 MGP_C3HHeJ_G0013047.1 mouse_genomes_project 5 112872294 112872965 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014928.1 MGP_C3HHeJ_G0013032.1 mouse_genomes_project 5 109882598 109884280 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101211.1 MGP_C3HHeJ_G0039346.1 mouse_genomes_project 5 20290203 20291040 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0014728.1 MGP_C3HHeJ_G0012832.1 mouse_genomes_project 5 22174937 22175576 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070497.1 MGP_C3HHeJ_G0029115.1 mouse_genomes_project 5 29394656 29399013 - MGP_C3HHeJ_P0070497 Zfp513 protein_coding protein_coding MGP_C3HHeJ_T0070498.1 MGP_C3HHeJ_G0029115.1 mouse_genomes_project 5 29394658 29398752 - MGP_C3HHeJ_P0070498 Zfp513 protein_coding protein_coding MGP_C3HHeJ_T0070499.1 MGP_C3HHeJ_G0029115.1 mouse_genomes_project 5 29395175 29397471 - Zfp513 protein_coding processed_transcript MGP_C3HHeJ_T0070500.1 MGP_C3HHeJ_G0029115.1 mouse_genomes_project 5 29395456 29395962 - MGP_C3HHeJ_P0070500 Zfp513 protein_coding protein_coding MGP_C3HHeJ_T0070501.1 MGP_C3HHeJ_G0029115.1 mouse_genomes_project 5 29395556 29397472 - Zfp513 protein_coding processed_transcript MGP_C3HHeJ_T0070502.1 MGP_C3HHeJ_G0029115.1 mouse_genomes_project 5 29395664 29397472 - Zfp513 protein_coding processed_transcript MGP_C3HHeJ_T0070503.1 MGP_C3HHeJ_G0029115.1 mouse_genomes_project 5 29397378 29398925 - MGP_C3HHeJ_P0070503 Zfp513 protein_coding protein_coding MGP_C3HHeJ_T0070504.1 MGP_C3HHeJ_G0029115.1 mouse_genomes_project 5 29397465 29398935 - MGP_C3HHeJ_P0070504 Zfp513 protein_coding protein_coding MGP_C3HHeJ_T0070318.1 MGP_C3HHeJ_G0029087.1 mouse_genomes_project 5 28509912 28610041 - MGP_C3HHeJ_P0070318 Otof protein_coding protein_coding MGP_C3HHeJ_T0070319.1 MGP_C3HHeJ_G0029087.1 mouse_genomes_project 5 28509912 28610011 - MGP_C3HHeJ_P0070319 Otof protein_coding protein_coding MGP_C3HHeJ_T0070320.1 MGP_C3HHeJ_G0029087.1 mouse_genomes_project 5 28509918 28610041 - Otof protein_coding retained_intron MGP_C3HHeJ_T0070321.1 MGP_C3HHeJ_G0029087.1 mouse_genomes_project 5 28510145 28609968 - Otof protein_coding retained_intron MGP_C3HHeJ_T0070322.1 MGP_C3HHeJ_G0029087.1 mouse_genomes_project 5 28550964 28554117 - Otof protein_coding retained_intron MGP_C3HHeJ_T0008235.1 MGP_C3HHeJ_G0006687.1 mouse_genomes_project 5 117971857 117972625 - 1110006O24Rik lincRNA lincRNA MGP_C3HHeJ_T0102045.1 MGP_C3HHeJ_G0040010.1 mouse_genomes_project 5 95711269 95714333 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014844.1 MGP_C3HHeJ_G0012948.1 mouse_genomes_project 5 75044330 75047301 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010648.1 MGP_C3HHeJ_G0008781.1 mouse_genomes_project 5 143310026 143310122 - Mir339 miRNA miRNA MGP_C3HHeJ_T0101220.1 MGP_C3HHeJ_G0039353.1 mouse_genomes_project 5 49635499 49638341 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0099447.1 MGP_C3HHeJ_G0037641.1 mouse_genomes_project 5 72110499 72110597 - Gm25768 snRNA snRNA MGP_C3HHeJ_T0075366.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102760 148128252 + Pms2 protein_coding retained_intron MGP_C3HHeJ_T0075367.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102760 148128252 + Pms2 protein_coding processed_transcript MGP_C3HHeJ_T0075368.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102760 148128252 + MGP_C3HHeJ_P0075368 Pms2 protein_coding protein_coding MGP_C3HHeJ_T0075369.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102786 148125494 + Pms2 protein_coding processed_transcript MGP_C3HHeJ_T0075370.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102786 148125732 + Pms2 protein_coding processed_transcript MGP_C3HHeJ_T0075371.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102795 148111990 + Pms2 protein_coding processed_transcript MGP_C3HHeJ_T0075372.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102800 148108345 + Pms2 protein_coding processed_transcript MGP_C3HHeJ_T0075373.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102821 148121199 + Pms2 protein_coding retained_intron MGP_C3HHeJ_T0075374.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102821 148107882 + Pms2 protein_coding retained_intron MGP_C3HHeJ_T0075375.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102853 148125448 + MGP_C3HHeJ_P0075375 Pms2 protein_coding protein_coding MGP_C3HHeJ_T0075376.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102957 148107051 + Pms2 protein_coding processed_transcript MGP_C3HHeJ_T0075377.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148106908 148107503 + Pms2 protein_coding retained_intron MGP_C3HHeJ_T0075378.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148113910 148119808 + MGP_C3HHeJ_P0075378 Pms2 protein_coding protein_coding MGP_C3HHeJ_T0100690.1 MGP_C3HHeJ_G0038884.1 mouse_genomes_project 5 18806943 18807062 - Gm22490 snoRNA snoRNA MGP_C3HHeJ_T0099432.1 MGP_C3HHeJ_G0037626.1 mouse_genomes_project 5 32950405 32950510 + Gm22847 snRNA snRNA MGP_C3HHeJ_T0072192.1 MGP_C3HHeJ_G0029420.1 mouse_genomes_project 5 91201972 91218807 + MGP_C3HHeJ_P0072192 Alb protein_coding protein_coding MGP_C3HHeJ_T0072193.1 MGP_C3HHeJ_G0029420.1 mouse_genomes_project 5 91203394 91203798 + Alb protein_coding processed_transcript MGP_C3HHeJ_T0072194.1 MGP_C3HHeJ_G0029420.1 mouse_genomes_project 5 91203775 91216866 + Alb protein_coding processed_transcript MGP_C3HHeJ_T0071683.1 MGP_C3HHeJ_G0029309.1 mouse_genomes_project 5 71443694 71908248 + MGP_C3HHeJ_P0071683 Gabrb1 protein_coding protein_coding MGP_C3HHeJ_T0071684.1 MGP_C3HHeJ_G0029309.1 mouse_genomes_project 5 71491157 71941138 + MGP_C3HHeJ_P0071684 Gabrb1 protein_coding protein_coding MGP_C3HHeJ_T0100706.1 MGP_C3HHeJ_G0038900.1 mouse_genomes_project 5 68253246 68253373 - Gm23605 snoRNA snoRNA MGP_C3HHeJ_T0014684.1 MGP_C3HHeJ_G0012788.1 mouse_genomes_project 5 9803889 9804874 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070056.1 MGP_C3HHeJ_G0029033.1 mouse_genomes_project 5 22106775 22125699 + MGP_C3HHeJ_P0070056 Nupl2 protein_coding protein_coding MGP_C3HHeJ_T0070057.1 MGP_C3HHeJ_G0029033.1 mouse_genomes_project 5 22106812 22124523 + MGP_C3HHeJ_P0070057 Nupl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070058.1 MGP_C3HHeJ_G0029033.1 mouse_genomes_project 5 22109320 22111694 + Nupl2 protein_coding retained_intron MGP_C3HHeJ_T0070059.1 MGP_C3HHeJ_G0029033.1 mouse_genomes_project 5 22119677 22123118 + Nupl2 protein_coding retained_intron MGP_C3HHeJ_T0015018.1 MGP_C3HHeJ_G0013122.1 mouse_genomes_project 5 150356845 150357005 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102051.1 MGP_C3HHeJ_G0040016.1 mouse_genomes_project 5 111399711 111402955 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0074067.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127412885 127476510 - MGP_C3HHeJ_P0074067 Sbno1 protein_coding protein_coding MGP_C3HHeJ_T0074068.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127412891 127476207 - MGP_C3HHeJ_P0074068 Sbno1 protein_coding protein_coding MGP_C3HHeJ_T0074069.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127418712 127464619 - MGP_C3HHeJ_P0074069 Sbno1 protein_coding protein_coding MGP_C3HHeJ_T0074070.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127421852 127432462 - Sbno1 protein_coding retained_intron MGP_C3HHeJ_T0074071.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127434887 127435861 - Sbno1 protein_coding retained_intron MGP_C3HHeJ_T0074072.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127439959 127440611 - Sbno1 protein_coding retained_intron MGP_C3HHeJ_T0074073.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127440607 127442119 - Sbno1 protein_coding retained_intron MGP_C3HHeJ_T0074074.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127442654 127476190 - MGP_C3HHeJ_P0074074 Sbno1 protein_coding protein_coding MGP_C3HHeJ_T0074075.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127442670 127445957 - Sbno1 protein_coding retained_intron MGP_C3HHeJ_T0074076.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127442672 127476597 - MGP_C3HHeJ_P0074076 Sbno1 protein_coding protein_coding MGP_C3HHeJ_T0074077.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127445622 127446631 - Sbno1 protein_coding retained_intron MGP_C3HHeJ_T0074078.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127445622 127476553 - MGP_C3HHeJ_P0074078 Sbno1 protein_coding protein_coding MGP_C3HHeJ_T0074079.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127448114 127476189 - MGP_C3HHeJ_P0074079 Sbno1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074080.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127449487 127455254 - MGP_C3HHeJ_P0074080 Sbno1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074081.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127456626 127476181 - MGP_C3HHeJ_P0074081 Sbno1 protein_coding protein_coding MGP_C3HHeJ_T0074082.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127460217 127476165 - MGP_C3HHeJ_P0074082 Sbno1 protein_coding protein_coding MGP_C3HHeJ_T0074083.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127460449 127469777 - MGP_C3HHeJ_P0074083 Sbno1 protein_coding protein_coding MGP_C3HHeJ_T0074084.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127474108 127476140 - Sbno1 protein_coding retained_intron MGP_C3HHeJ_T0014740.1 MGP_C3HHeJ_G0012844.1 mouse_genomes_project 5 25067044 25068726 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015004.1 MGP_C3HHeJ_G0013108.1 mouse_genomes_project 5 146778106 146778335 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100724.1 MGP_C3HHeJ_G0038918.1 mouse_genomes_project 5 109620134 109620266 + Gm26387 snoRNA snoRNA MGP_C3HHeJ_T0102048.1 MGP_C3HHeJ_G0040013.1 mouse_genomes_project 5 96987234 96989724 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0075380.1 MGP_C3HHeJ_G0030039.1 mouse_genomes_project 5 148127318 148140680 + Rsph10b protein_coding processed_transcript MGP_C3HHeJ_T0075381.1 MGP_C3HHeJ_G0030039.1 mouse_genomes_project 5 148127345 148184749 + MGP_C3HHeJ_P0075381 Rsph10b protein_coding protein_coding MGP_C3HHeJ_T0075382.1 MGP_C3HHeJ_G0030039.1 mouse_genomes_project 5 148131366 148184753 + MGP_C3HHeJ_P0075382 Rsph10b protein_coding unknown_likely_coding MGP_C3HHeJ_T0075383.1 MGP_C3HHeJ_G0030039.1 mouse_genomes_project 5 148131366 148140677 + MGP_C3HHeJ_P0075383 Rsph10b protein_coding protein_coding MGP_C3HHeJ_T0075384.1 MGP_C3HHeJ_G0030039.1 mouse_genomes_project 5 148176730 148184558 + Rsph10b protein_coding processed_transcript MGP_C3HHeJ_T0073336.1 MGP_C3HHeJ_G0029662.1 mouse_genomes_project 5 117646893 117649233 + MGP_C3HHeJ_P0073336 Triap1 protein_coding protein_coding MGP_C3HHeJ_T0004803.1 MGP_C3HHeJ_G0004124.1 mouse_genomes_project 5 144089923 144096316 + Gm16121 antisense antisense MGP_C3HHeJ_T0100717.1 MGP_C3HHeJ_G0038911.1 mouse_genomes_project 5 99734319 99734450 + Gm24279 snoRNA snoRNA MGP_C3HHeJ_T0070046.1 MGP_C3HHeJ_G0029031.1 mouse_genomes_project 5 21825020 21832585 - Fam126a protein_coding processed_transcript MGP_C3HHeJ_T0070047.1 MGP_C3HHeJ_G0029031.1 mouse_genomes_project 5 21825021 21967105 - MGP_C3HHeJ_P0070047 Fam126a protein_coding protein_coding MGP_C3HHeJ_T0070048.1 MGP_C3HHeJ_G0029031.1 mouse_genomes_project 5 21893084 21967483 - MGP_C3HHeJ_P0070048 Fam126a protein_coding protein_coding MGP_C3HHeJ_T0070049.1 MGP_C3HHeJ_G0029031.1 mouse_genomes_project 5 21896630 21967441 - MGP_C3HHeJ_P0070049 Fam126a protein_coding protein_coding MGP_C3HHeJ_T0070050.1 MGP_C3HHeJ_G0029031.1 mouse_genomes_project 5 21896632 21934264 - MGP_C3HHeJ_P0070050 Fam126a protein_coding protein_coding MGP_C3HHeJ_T0070051.1 MGP_C3HHeJ_G0029031.1 mouse_genomes_project 5 21915132 21918235 - Fam126a protein_coding retained_intron MGP_C3HHeJ_T0070052.1 MGP_C3HHeJ_G0029031.1 mouse_genomes_project 5 21922053 21967098 - Fam126a protein_coding processed_transcript MGP_C3HHeJ_T0008071.1 MGP_C3HHeJ_G0006573.1 mouse_genomes_project 5 64127533 64129565 - Gm42564 lincRNA lincRNA MGP_C3HHeJ_T0008403.1 MGP_C3HHeJ_G0006805.1 mouse_genomes_project 5 156603961 156612796 + lincRNA lincRNA MGP_C3HHeJ_T0014956.1 MGP_C3HHeJ_G0013060.1 mouse_genomes_project 5 117597610 117597748 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070647.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205820 31230045 + MGP_C3HHeJ_P0070647 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070648.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205825 31239458 + MGP_C3HHeJ_P0070648 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070649.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205832 31210118 + MGP_C3HHeJ_P0070649 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070650.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205840 31304937 + MGP_C3HHeJ_P0070650 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070651.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205846 31339570 + MGP_C3HHeJ_P0070651 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070652.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205853 31342570 + MGP_C3HHeJ_P0070652 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070653.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205879 31250268 + Depdc5 protein_coding retained_intron MGP_C3HHeJ_T0070654.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205889 31230664 + Depdc5 protein_coding retained_intron MGP_C3HHeJ_T0070655.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205889 31268922 + MGP_C3HHeJ_P0070655 Depdc5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070656.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205891 31221084 + MGP_C3HHeJ_P0070656 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070657.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205896 31304935 + Depdc5 protein_coding processed_transcript MGP_C3HHeJ_T0070658.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31206274 31210130 + MGP_C3HHeJ_P0070658 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070659.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31206706 31340004 + MGP_C3HHeJ_P0070659 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070660.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31247784 31263353 + MGP_C3HHeJ_P0070660 Depdc5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070661.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31268947 31339997 + MGP_C3HHeJ_P0070661 Depdc5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070662.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31269045 31340004 + MGP_C3HHeJ_P0070662 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070663.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31289723 31290937 + Depdc5 protein_coding retained_intron MGP_C3HHeJ_T0070664.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31290018 31313337 + MGP_C3HHeJ_P0070664 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070665.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31316323 31322550 + Depdc5 protein_coding retained_intron MGP_C3HHeJ_T0070182.1 MGP_C3HHeJ_G0029058.1 mouse_genomes_project 5 23251282 23437234 - MGP_C3HHeJ_P0070182 Kmt2c protein_coding unknown_likely_coding MGP_C3HHeJ_T0070183.1 MGP_C3HHeJ_G0029058.1 mouse_genomes_project 5 23251291 23279418 - MGP_C3HHeJ_P0070183 Kmt2c protein_coding protein_coding MGP_C3HHeJ_T0070184.1 MGP_C3HHeJ_G0029058.1 mouse_genomes_project 5 23251919 23288931 - MGP_C3HHeJ_P0070184 Kmt2c protein_coding protein_coding MGP_C3HHeJ_T0070185.1 MGP_C3HHeJ_G0029058.1 mouse_genomes_project 5 23253102 23497222 - MGP_C3HHeJ_P0070185 Kmt2c protein_coding protein_coding MGP_C3HHeJ_T0070186.1 MGP_C3HHeJ_G0029058.1 mouse_genomes_project 5 23255146 23260795 - Kmt2c protein_coding retained_intron MGP_C3HHeJ_T0070187.1 MGP_C3HHeJ_G0029058.1 mouse_genomes_project 5 23268435 23272722 - Kmt2c protein_coding retained_intron MGP_C3HHeJ_T0070188.1 MGP_C3HHeJ_G0029058.1 mouse_genomes_project 5 23296159 23497179 - MGP_C3HHeJ_P0070188 Kmt2c protein_coding protein_coding MGP_C3HHeJ_T0070189.1 MGP_C3HHeJ_G0029058.1 mouse_genomes_project 5 23353400 23497232 - MGP_C3HHeJ_P0070189 Kmt2c protein_coding protein_coding MGP_C3HHeJ_T0070190.1 MGP_C3HHeJ_G0029058.1 mouse_genomes_project 5 23365149 23497260 - Kmt2c protein_coding retained_intron MGP_C3HHeJ_T0075232.1 MGP_C3HHeJ_G0030007.1 mouse_genomes_project 5 146543813 146564571 + MGP_C3HHeJ_P0075232 Foxk1 protein_coding protein_coding MGP_C3HHeJ_T0075233.1 MGP_C3HHeJ_G0030007.1 mouse_genomes_project 5 146543816 146608510 + MGP_C3HHeJ_P0075233 Foxk1 protein_coding protein_coding MGP_C3HHeJ_T0072112.1 MGP_C3HHeJ_G0029393.1 mouse_genomes_project 5 88450366 88462082 + MGP_C3HHeJ_P0072112 Odam protein_coding protein_coding MGP_C3HHeJ_T0072113.1 MGP_C3HHeJ_G0029393.1 mouse_genomes_project 5 88451032 88460653 + MGP_C3HHeJ_P0072113 Odam protein_coding protein_coding MGP_C3HHeJ_T0070254.1 MGP_C3HHeJ_G0029075.1 mouse_genomes_project 5 27679574 27797905 + MGP_C3HHeJ_P0070254 Ube3c protein_coding protein_coding MGP_C3HHeJ_T0070255.1 MGP_C3HHeJ_G0029075.1 mouse_genomes_project 5 27679778 27751990 + MGP_C3HHeJ_P0070255 Ube3c protein_coding protein_coding MGP_C3HHeJ_T0070256.1 MGP_C3HHeJ_G0029075.1 mouse_genomes_project 5 27679818 27719680 + Ube3c protein_coding retained_intron MGP_C3HHeJ_T0070257.1 MGP_C3HHeJ_G0029075.1 mouse_genomes_project 5 27710390 27720217 + Ube3c protein_coding processed_transcript MGP_C3HHeJ_T0070258.1 MGP_C3HHeJ_G0029075.1 mouse_genomes_project 5 27750418 27751990 + Ube3c protein_coding retained_intron MGP_C3HHeJ_T0008044.1 MGP_C3HHeJ_G0006550.1 mouse_genomes_project 5 43856485 43910563 - Gm43303 lincRNA lincRNA MGP_C3HHeJ_T0008072.1 MGP_C3HHeJ_G0006574.1 mouse_genomes_project 5 64128024 64129793 + Gm42565 lincRNA lincRNA MGP_C3HHeJ_T0008116.1 MGP_C3HHeJ_G0006609.1 mouse_genomes_project 5 91995371 92021778 - Gm19619 lincRNA lincRNA MGP_C3HHeJ_T0070192.1 MGP_C3HHeJ_G0029060.1 mouse_genomes_project 5 23707809 23724699 - MGP_C3HHeJ_P0070192 Xrcc2 protein_coding protein_coding MGP_C3HHeJ_T0070193.1 MGP_C3HHeJ_G0029060.1 mouse_genomes_project 5 23710048 23711436 - Xrcc2 protein_coding processed_transcript MGP_C3HHeJ_T0070194.1 MGP_C3HHeJ_G0029060.1 mouse_genomes_project 5 23714560 23724647 - MGP_C3HHeJ_P0070194 Xrcc2 protein_coding protein_coding MGP_C3HHeJ_T0070195.1 MGP_C3HHeJ_G0029060.1 mouse_genomes_project 5 23715318 23724638 - Xrcc2 protein_coding retained_intron MGP_C3HHeJ_T0011501.1 MGP_C3HHeJ_G0009634.1 mouse_genomes_project 5 90358547 90358871 + Gm25320 misc_RNA misc_RNA MGP_C3HHeJ_T0014733.1 MGP_C3HHeJ_G0012837.1 mouse_genomes_project 5 23443657 23444259 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014698.1 MGP_C3HHeJ_G0012802.1 mouse_genomes_project 5 17122612 17124281 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001663.1 MGP_C3HHeJ_G0001587.1 mouse_genomes_project 5 74565747 74567077 + TEC TEC MGP_C3HHeJ_T0072156.1 MGP_C3HHeJ_G0029413.1 mouse_genomes_project 5 89535983 89891484 + MGP_C3HHeJ_P0072156 Slc4a4 protein_coding protein_coding MGP_C3HHeJ_T0072157.1 MGP_C3HHeJ_G0029413.1 mouse_genomes_project 5 89536426 89537424 + Slc4a4 protein_coding processed_transcript MGP_C3HHeJ_T0072158.1 MGP_C3HHeJ_G0029413.1 mouse_genomes_project 5 89536462 89886689 + MGP_C3HHeJ_P0072158 Slc4a4 protein_coding protein_coding MGP_C3HHeJ_T0072159.1 MGP_C3HHeJ_G0029413.1 mouse_genomes_project 5 89536464 89887616 + MGP_C3HHeJ_P0072159 Slc4a4 protein_coding protein_coding MGP_C3HHeJ_T0072160.1 MGP_C3HHeJ_G0029413.1 mouse_genomes_project 5 89583454 89603612 + MGP_C3HHeJ_P0072160 Slc4a4 protein_coding protein_coding MGP_C3HHeJ_T0072161.1 MGP_C3HHeJ_G0029413.1 mouse_genomes_project 5 89672780 89886683 + MGP_C3HHeJ_P0072161 Slc4a4 protein_coding protein_coding MGP_C3HHeJ_T0072162.1 MGP_C3HHeJ_G0029413.1 mouse_genomes_project 5 89672891 89688610 + MGP_C3HHeJ_P0072162 Slc4a4 protein_coding protein_coding MGP_C3HHeJ_T0072163.1 MGP_C3HHeJ_G0029413.1 mouse_genomes_project 5 89672906 89767042 + MGP_C3HHeJ_P0072163 Slc4a4 protein_coding protein_coding MGP_C3HHeJ_T0014900.1 MGP_C3HHeJ_G0013004.1 mouse_genomes_project 5 101070083 101070541 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100707.1 MGP_C3HHeJ_G0038901.1 mouse_genomes_project 5 74058705 74058826 + Snora26 snoRNA snoRNA MGP_C3HHeJ_T0100708.1 MGP_C3HHeJ_G0038902.1 mouse_genomes_project 5 77766443 77766566 - Gm22011 snoRNA snoRNA MGP_C3HHeJ_T0008048.1 MGP_C3HHeJ_G0006554.1 mouse_genomes_project 5 51130180 51131392 + Gm43177 lincRNA lincRNA MGP_C3HHeJ_T0010626.1 MGP_C3HHeJ_G0008759.1 mouse_genomes_project 5 124677999 124678064 - Mir7031 miRNA miRNA MGP_C3HHeJ_T0099465.1 MGP_C3HHeJ_G0037659.1 mouse_genomes_project 5 101158305 101158404 - Gm22838 snRNA snRNA MGP_C3HHeJ_T0008347.1 MGP_C3HHeJ_G0006764.1 mouse_genomes_project 5 147551116 147551907 + Gm43397 lincRNA lincRNA MGP_C3HHeJ_T0004619.1 MGP_C3HHeJ_G0003991.1 mouse_genomes_project 5 46887670 46890313 - 4930518C09Rik antisense antisense MGP_C3HHeJ_T0072762.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791208 109836879 + Mtf2 protein_coding processed_transcript MGP_C3HHeJ_T0072763.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791245 109837174 + MGP_C3HHeJ_P0072763 Mtf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072764.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791250 109837340 + Mtf2 protein_coding processed_transcript MGP_C3HHeJ_T0072765.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791250 109837985 + Mtf2 protein_coding processed_transcript MGP_C3HHeJ_T0072766.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791251 109795120 + Mtf2 protein_coding retained_intron MGP_C3HHeJ_T0072767.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791263 109813066 + MGP_C3HHeJ_P0072767 Mtf2 protein_coding protein_coding MGP_C3HHeJ_T0072768.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791276 109836718 + MGP_C3HHeJ_P0072768 Mtf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072769.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791276 109838720 + MGP_C3HHeJ_P0072769 Mtf2 protein_coding protein_coding MGP_C3HHeJ_T0072770.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791276 109837986 + MGP_C3HHeJ_P0072770 Mtf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072771.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791278 109836801 + MGP_C3HHeJ_P0072771 Mtf2 protein_coding protein_coding MGP_C3HHeJ_T0072772.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791278 109820895 + MGP_C3HHeJ_P0072772 Mtf2 protein_coding protein_coding MGP_C3HHeJ_T0072773.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791291 109813674 + Mtf2 protein_coding processed_transcript MGP_C3HHeJ_T0072774.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109798628 109806876 + Mtf2 protein_coding processed_transcript MGP_C3HHeJ_T0072775.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109803860 109837186 + Mtf2 protein_coding processed_transcript MGP_C3HHeJ_T0072776.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109812693 109830451 + MGP_C3HHeJ_P0072776 Mtf2 protein_coding protein_coding MGP_C3HHeJ_T0072777.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109818831 109833669 + MGP_C3HHeJ_P0072777 Mtf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008094.1 MGP_C3HHeJ_G0006591.1 mouse_genomes_project 5 75880835 75884555 - Gm28865 lincRNA lincRNA MGP_C3HHeJ_T0099460.1 MGP_C3HHeJ_G0037654.1 mouse_genomes_project 5 91956404 91956511 - Gm23092 snRNA snRNA MGP_C3HHeJ_T0069952.1 MGP_C3HHeJ_G0029015.1 mouse_genomes_project 5 19253450 19262245 + Lrrc17 protein_coding processed_transcript MGP_C3HHeJ_T0069953.1 MGP_C3HHeJ_G0029015.1 mouse_genomes_project 5 19253454 19287812 + MGP_C3HHeJ_P0069953 Lrrc17 protein_coding protein_coding MGP_C3HHeJ_T0008063.1 MGP_C3HHeJ_G0006568.1 mouse_genomes_project 5 63879755 63885718 + lincRNA lincRNA MGP_C3HHeJ_T0001458.1 MGP_C3HHeJ_G0001386.1 mouse_genomes_project 5 29826691 29827322 + TEC TEC MGP_C3HHeJ_T0074170.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128321706 128388357 - MGP_C3HHeJ_P0074170 Scarb1 protein_coding protein_coding MGP_C3HHeJ_T0074171.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128321708 128388334 - MGP_C3HHeJ_P0074171 Scarb1 protein_coding protein_coding MGP_C3HHeJ_T0074172.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128322185 128339704 - MGP_C3HHeJ_P0074172 Scarb1 protein_coding protein_coding MGP_C3HHeJ_T0074173.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128322406 128329729 - Scarb1 protein_coding processed_transcript MGP_C3HHeJ_T0074174.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128328519 128332241 - Scarb1 protein_coding retained_intron MGP_C3HHeJ_T0074175.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128328924 128388282 - Scarb1 protein_coding retained_intron MGP_C3HHeJ_T0074176.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128343720 128350944 - Scarb1 protein_coding retained_intron MGP_C3HHeJ_T0074177.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128346761 128364003 - Scarb1 protein_coding processed_transcript MGP_C3HHeJ_T0074178.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128349590 128387270 - MGP_C3HHeJ_P0074178 Scarb1 protein_coding protein_coding MGP_C3HHeJ_T0074179.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128350650 128373628 - Scarb1 protein_coding processed_transcript MGP_C3HHeJ_T0074180.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128372621 128375083 - Scarb1 protein_coding retained_intron MGP_C3HHeJ_T0073275.1 MGP_C3HHeJ_G0029648.1 mouse_genomes_project 5 117219909 117227544 + MGP_C3HHeJ_P0073275 2210016L21Rik protein_coding protein_coding MGP_C3HHeJ_T0073276.1 MGP_C3HHeJ_G0029648.1 mouse_genomes_project 5 117219955 117224633 + 2210016L21Rik protein_coding retained_intron MGP_C3HHeJ_T0073277.1 MGP_C3HHeJ_G0029648.1 mouse_genomes_project 5 117219961 117224599 + MGP_C3HHeJ_P0073277 2210016L21Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073278.1 MGP_C3HHeJ_G0029648.1 mouse_genomes_project 5 117219982 117223970 + 2210016L21Rik protein_coding retained_intron MGP_C3HHeJ_T0073279.1 MGP_C3HHeJ_G0029648.1 mouse_genomes_project 5 117223557 117225545 + MGP_C3HHeJ_P0073279 2210016L21Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008061.1 MGP_C3HHeJ_G0006566.1 mouse_genomes_project 5 63528225 63533454 + 5830416I19Rik lincRNA lincRNA MGP_C3HHeJ_T0069700.1 MGP_C3HHeJ_G0028973.1 mouse_genomes_project 5 2533015 2563714 - Cldn12 protein_coding processed_transcript MGP_C3HHeJ_T0069701.1 MGP_C3HHeJ_G0028973.1 mouse_genomes_project 5 2553226 2563591 - MGP_C3HHeJ_P0069701 Cldn12 protein_coding protein_coding MGP_C3HHeJ_T0069702.1 MGP_C3HHeJ_G0028973.1 mouse_genomes_project 5 2553320 2563675 - MGP_C3HHeJ_P0069702 Cldn12 protein_coding protein_coding MGP_C3HHeJ_T0069703.1 MGP_C3HHeJ_G0028973.1 mouse_genomes_project 5 2553322 2563627 - MGP_C3HHeJ_P0069703 Cldn12 protein_coding protein_coding MGP_C3HHeJ_T0069704.1 MGP_C3HHeJ_G0028973.1 mouse_genomes_project 5 2553434 2563532 - MGP_C3HHeJ_P0069704 Cldn12 protein_coding protein_coding MGP_C3HHeJ_T0069705.1 MGP_C3HHeJ_G0028973.1 mouse_genomes_project 5 2556619 2563591 - MGP_C3HHeJ_P0069705 Cldn12 protein_coding protein_coding MGP_C3HHeJ_T0069706.1 MGP_C3HHeJ_G0028973.1 mouse_genomes_project 5 2559890 2563760 - Cldn12 protein_coding processed_transcript MGP_C3HHeJ_T0069707.1 MGP_C3HHeJ_G0028973.1 mouse_genomes_project 5 2562018 2563248 - Cldn12 protein_coding processed_transcript MGP_C3HHeJ_T0075131.1 MGP_C3HHeJ_G0029982.1 mouse_genomes_project 5 143366194 143370844 + MGP_C3HHeJ_P0075131 Gper1 protein_coding protein_coding MGP_C3HHeJ_T0075132.1 MGP_C3HHeJ_G0029982.1 mouse_genomes_project 5 143366323 143368933 + Gper1 protein_coding processed_transcript MGP_C3HHeJ_T0071392.1 MGP_C3HHeJ_G0029259.1 mouse_genomes_project 5 61193896 61196245 + MGP_C3HHeJ_P0071392 G6pd2 protein_coding protein_coding MGP_C3HHeJ_T0001419.1 MGP_C3HHeJ_G0001349.1 mouse_genomes_project 5 11031922 11033779 - TEC TEC MGP_C3HHeJ_T0014713.1 MGP_C3HHeJ_G0012817.1 mouse_genomes_project 5 20329349 20329645 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072293.1 MGP_C3HHeJ_G0029449.1 mouse_genomes_project 5 93157323 93159548 - Cxcl10 protein_coding retained_intron MGP_C3HHeJ_T0072294.1 MGP_C3HHeJ_G0029449.1 mouse_genomes_project 5 93157323 93159563 - MGP_C3HHeJ_P0072294 Cxcl10 protein_coding protein_coding MGP_C3HHeJ_T0072295.1 MGP_C3HHeJ_G0029449.1 mouse_genomes_project 5 93157490 93159570 - MGP_C3HHeJ_P0072295 Cxcl10 protein_coding protein_coding MGP_C3HHeJ_T0072296.1 MGP_C3HHeJ_G0029449.1 mouse_genomes_project 5 93158681 93159563 - Cxcl10 protein_coding retained_intron MGP_C3HHeJ_T0008361.1 MGP_C3HHeJ_G0006776.1 mouse_genomes_project 5 152627118 152638017 - Gm15721 lincRNA lincRNA MGP_C3HHeJ_T0015013.1 MGP_C3HHeJ_G0013117.1 mouse_genomes_project 5 149534530 149535868 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075347.1 MGP_C3HHeJ_G0030032.1 mouse_genomes_project 5 147861695 147866625 + Cyth3 protein_coding retained_intron MGP_C3HHeJ_T0075348.1 MGP_C3HHeJ_G0030032.1 mouse_genomes_project 5 147861834 147950899 + MGP_C3HHeJ_P0075348 Cyth3 protein_coding protein_coding MGP_C3HHeJ_T0075349.1 MGP_C3HHeJ_G0030032.1 mouse_genomes_project 5 147873261 147933302 + MGP_C3HHeJ_P0075349 Cyth3 protein_coding protein_coding MGP_C3HHeJ_T0075350.1 MGP_C3HHeJ_G0030032.1 mouse_genomes_project 5 147875546 147933204 + MGP_C3HHeJ_P0075350 Cyth3 protein_coding protein_coding MGP_C3HHeJ_T0004723.1 MGP_C3HHeJ_G0004069.1 mouse_genomes_project 5 118640116 118641055 + Gm13837 antisense antisense MGP_C3HHeJ_T0073032.1 MGP_C3HHeJ_G0029602.1 mouse_genomes_project 5 114397254 114432520 + MGP_C3HHeJ_P0073032 Hps4 protein_coding protein_coding MGP_C3HHeJ_T0073033.1 MGP_C3HHeJ_G0029602.1 mouse_genomes_project 5 114397264 114398921 + Hps4 protein_coding processed_transcript MGP_C3HHeJ_T0073034.1 MGP_C3HHeJ_G0029602.1 mouse_genomes_project 5 114397266 114432520 + Hps4 protein_coding retained_intron MGP_C3HHeJ_T0073035.1 MGP_C3HHeJ_G0029602.1 mouse_genomes_project 5 114397266 114432520 + MGP_C3HHeJ_P0073035 Hps4 protein_coding protein_coding MGP_C3HHeJ_T0073036.1 MGP_C3HHeJ_G0029602.1 mouse_genomes_project 5 114397271 114399061 + Hps4 protein_coding processed_transcript MGP_C3HHeJ_T0073038.1 MGP_C3HHeJ_G0029602.1 mouse_genomes_project 5 114422846 114423876 + Hps4 protein_coding retained_intron MGP_C3HHeJ_T0073039.1 MGP_C3HHeJ_G0029602.1 mouse_genomes_project 5 114429442 114432507 + Hps4 protein_coding retained_intron MGP_C3HHeJ_T0074555.1 MGP_C3HHeJ_G0029869.1 mouse_genomes_project 5 138585500 138601504 + MGP_C3HHeJ_P0074555 Tbl2 protein_coding protein_coding MGP_C3HHeJ_T0074556.1 MGP_C3HHeJ_G0029869.1 mouse_genomes_project 5 138585529 138595565 + MGP_C3HHeJ_P0074556 Tbl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074557.1 MGP_C3HHeJ_G0029869.1 mouse_genomes_project 5 138585529 138593401 + MGP_C3HHeJ_P0074557 Tbl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074558.1 MGP_C3HHeJ_G0029869.1 mouse_genomes_project 5 138585534 138590245 + MGP_C3HHeJ_P0074558 Tbl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074559.1 MGP_C3HHeJ_G0029869.1 mouse_genomes_project 5 138588560 138593439 + MGP_C3HHeJ_P0074559 Tbl2 protein_coding protein_coding MGP_C3HHeJ_T0015006.1 MGP_C3HHeJ_G0013110.1 mouse_genomes_project 5 147254905 147255125 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008045.1 MGP_C3HHeJ_G0006551.1 mouse_genomes_project 5 44594759 44600348 - 4930405L22Rik lincRNA lincRNA MGP_C3HHeJ_T0015010.1 MGP_C3HHeJ_G0013114.1 mouse_genomes_project 5 148314639 148315596 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072418.1 MGP_C3HHeJ_G0029476.1 mouse_genomes_project 5 100126507 100235258 - MGP_C3HHeJ_P0072418 Prkg2 protein_coding protein_coding MGP_C3HHeJ_T0072419.1 MGP_C3HHeJ_G0029476.1 mouse_genomes_project 5 100127991 100140413 - MGP_C3HHeJ_P0072419 Prkg2 protein_coding protein_coding MGP_C3HHeJ_T0072420.1 MGP_C3HHeJ_G0029476.1 mouse_genomes_project 5 100127991 100140411 - MGP_C3HHeJ_P0072420 Prkg2 protein_coding protein_coding MGP_C3HHeJ_T0072421.1 MGP_C3HHeJ_G0029476.1 mouse_genomes_project 5 100128441 100234942 - MGP_C3HHeJ_P0072421 Prkg2 protein_coding protein_coding MGP_C3HHeJ_T0072422.1 MGP_C3HHeJ_G0029476.1 mouse_genomes_project 5 100143959 100164304 - Prkg2 protein_coding retained_intron MGP_C3HHeJ_T0010625.1 MGP_C3HHeJ_G0008758.1 mouse_genomes_project 5 120914190 120914282 - Gm26455 miRNA miRNA MGP_C3HHeJ_T0004623.1 MGP_C3HHeJ_G0003995.1 mouse_genomes_project 5 52097003 52098505 - Gm17182 antisense antisense MGP_C3HHeJ_T0071950.1 MGP_C3HHeJ_G0029355.1 mouse_genomes_project 5 77276055 77283968 - MGP_C3HHeJ_P0071950 Spink2 protein_coding protein_coding MGP_C3HHeJ_T0071951.1 MGP_C3HHeJ_G0029355.1 mouse_genomes_project 5 77276055 77283935 - MGP_C3HHeJ_P0071951 Spink2 protein_coding protein_coding MGP_C3HHeJ_T0071952.1 MGP_C3HHeJ_G0029355.1 mouse_genomes_project 5 77276060 77283702 - MGP_C3HHeJ_P0071952 Spink2 protein_coding protein_coding MGP_C3HHeJ_T0098140.1 MGP_C3HHeJ_G0036352.1 mouse_genomes_project 5 21543691 21543784 - Gm24009 rRNA rRNA MGP_C3HHeJ_T0001571.1 MGP_C3HHeJ_G0001497.1 mouse_genomes_project 5 57044301 57046477 + TEC TEC MGP_C3HHeJ_T0098485.1 MGP_C3HHeJ_G0036690.1 mouse_genomes_project 5 2189225 2195415 - Gm10484 sense_intronic sense_intronic MGP_C3HHeJ_T0008150.1 MGP_C3HHeJ_G0006635.1 mouse_genomes_project 5 102926404 102929466 + Gm20484 lincRNA lincRNA MGP_C3HHeJ_T0070696.1 MGP_C3HHeJ_G0029146.1 mouse_genomes_project 5 31975387 32006946 - MGP_C3HHeJ_P0070696 Fam53a protein_coding protein_coding MGP_C3HHeJ_T0070697.1 MGP_C3HHeJ_G0029146.1 mouse_genomes_project 5 31975396 32006223 - MGP_C3HHeJ_P0070697 Fam53a protein_coding protein_coding MGP_C3HHeJ_T0070698.1 MGP_C3HHeJ_G0029146.1 mouse_genomes_project 5 31975396 32006933 - MGP_C3HHeJ_P0070698 Fam53a protein_coding protein_coding MGP_C3HHeJ_T0070699.1 MGP_C3HHeJ_G0029146.1 mouse_genomes_project 5 31975396 32006899 - MGP_C3HHeJ_P0070699 Fam53a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070700.1 MGP_C3HHeJ_G0029146.1 mouse_genomes_project 5 31983256 32006894 - MGP_C3HHeJ_P0070700 Fam53a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070701.1 MGP_C3HHeJ_G0029146.1 mouse_genomes_project 5 31983429 32006910 - MGP_C3HHeJ_P0070701 Fam53a protein_coding protein_coding MGP_C3HHeJ_T0070702.1 MGP_C3HHeJ_G0029146.1 mouse_genomes_project 5 31985501 32006373 - MGP_C3HHeJ_P0070702 Fam53a protein_coding protein_coding MGP_C3HHeJ_T0070703.1 MGP_C3HHeJ_G0029146.1 mouse_genomes_project 5 31990940 32006916 - Fam53a protein_coding processed_transcript MGP_C3HHeJ_T0014984.1 MGP_C3HHeJ_G0013088.1 mouse_genomes_project 5 140472581 140472977 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015036.1 MGP_C3HHeJ_G0013140.1 mouse_genomes_project 5 155072172 155072560 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015021.1 MGP_C3HHeJ_G0013125.1 mouse_genomes_project 5 150479605 150479806 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004700.1 MGP_C3HHeJ_G0004052.1 mouse_genomes_project 5 112287404 112289402 - Gm15792 antisense antisense MGP_C3HHeJ_T0072861.1 MGP_C3HHeJ_G0029568.1 mouse_genomes_project 5 110919450 110934236 - MGP_C3HHeJ_P0072861 protein_coding protein_coding MGP_C3HHeJ_T0070685.1 MGP_C3HHeJ_G0029143.1 mouse_genomes_project 5 31693259 31734256 + MGP_C3HHeJ_P0070685 Maea protein_coding protein_coding MGP_C3HHeJ_T0070686.1 MGP_C3HHeJ_G0029143.1 mouse_genomes_project 5 31693311 31723659 + MGP_C3HHeJ_P0070686 Maea protein_coding protein_coding MGP_C3HHeJ_T0070687.1 MGP_C3HHeJ_G0029143.1 mouse_genomes_project 5 31693315 31721316 + MGP_C3HHeJ_P0070687 Maea protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070688.1 MGP_C3HHeJ_G0029143.1 mouse_genomes_project 5 31693935 31721367 + MGP_C3HHeJ_P0070688 Maea protein_coding protein_coding MGP_C3HHeJ_T0070689.1 MGP_C3HHeJ_G0029143.1 mouse_genomes_project 5 31723534 31732781 + Maea protein_coding retained_intron MGP_C3HHeJ_T0070690.1 MGP_C3HHeJ_G0029143.1 mouse_genomes_project 5 31732556 31733509 + Maea protein_coding retained_intron MGP_C3HHeJ_T0014973.1 MGP_C3HHeJ_G0013077.1 mouse_genomes_project 5 128916541 128917330 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100711.1 MGP_C3HHeJ_G0038905.1 mouse_genomes_project 5 84158506 84158634 - Gm24792 snoRNA snoRNA MGP_C3HHeJ_T0004742.1 MGP_C3HHeJ_G0004080.1 mouse_genomes_project 5 124159872 124170787 + Gm42917 antisense antisense MGP_C3HHeJ_T0070160.1 MGP_C3HHeJ_G0029053.1 mouse_genomes_project 5 22769362 22809666 - MGP_C3HHeJ_P0070160 Rheb protein_coding protein_coding MGP_C3HHeJ_T0070161.1 MGP_C3HHeJ_G0029053.1 mouse_genomes_project 5 22770206 22780491 - Rheb protein_coding retained_intron MGP_C3HHeJ_T0070162.1 MGP_C3HHeJ_G0029053.1 mouse_genomes_project 5 22776666 22809470 - Rheb protein_coding retained_intron MGP_C3HHeJ_T0070163.1 MGP_C3HHeJ_G0029053.1 mouse_genomes_project 5 22807045 22809651 - Rheb protein_coding retained_intron MGP_C3HHeJ_T0071706.1 MGP_C3HHeJ_G0029313.1 mouse_genomes_project 5 72385833 72389683 - Zar1 protein_coding retained_intron MGP_C3HHeJ_T0071707.1 MGP_C3HHeJ_G0029313.1 mouse_genomes_project 5 72386141 72401712 - MGP_C3HHeJ_P0071707 Zar1 protein_coding protein_coding MGP_C3HHeJ_T0071708.1 MGP_C3HHeJ_G0029313.1 mouse_genomes_project 5 72386144 72401212 - MGP_C3HHeJ_P0071708 Zar1 protein_coding protein_coding MGP_C3HHeJ_T0004555.1 MGP_C3HHeJ_G0003941.1 mouse_genomes_project 5 449178 450441 + 2510017J16Rik antisense antisense MGP_C3HHeJ_T0001767.1 MGP_C3HHeJ_G0001691.1 mouse_genomes_project 5 124394748 124396962 + TEC TEC MGP_C3HHeJ_T0075519.1 MGP_C3HHeJ_G0030071.1 mouse_genomes_project 5 150757516 150825439 + MGP_C3HHeJ_P0075519 protein_coding protein_coding MGP_C3HHeJ_T0075520.1 MGP_C3HHeJ_G0030071.1 mouse_genomes_project 5 150757613 150800112 + MGP_C3HHeJ_P0075520 protein_coding protein_coding MGP_C3HHeJ_T0075521.1 MGP_C3HHeJ_G0030071.1 mouse_genomes_project 5 150757921 150835524 + MGP_C3HHeJ_P0075521 protein_coding unknown_likely_coding MGP_C3HHeJ_T0075522.1 MGP_C3HHeJ_G0030071.1 mouse_genomes_project 5 150784804 150787003 + protein_coding retained_intron MGP_C3HHeJ_T0075523.1 MGP_C3HHeJ_G0030071.1 mouse_genomes_project 5 150821111 150824863 + protein_coding processed_transcript MGP_C3HHeJ_T0075524.1 MGP_C3HHeJ_G0030071.1 mouse_genomes_project 5 150829059 150832207 + protein_coding retained_intron MGP_C3HHeJ_T0004701.1 MGP_C3HHeJ_G0004053.1 mouse_genomes_project 5 112406983 112408941 + Gm42596 antisense antisense MGP_C3HHeJ_T0001619.1 MGP_C3HHeJ_G0001544.1 mouse_genomes_project 5 66064792 66065462 - TEC TEC MGP_C3HHeJ_T0075003.1 MGP_C3HHeJ_G0029956.1 mouse_genomes_project 5 141890346 141891654 + MGP_C3HHeJ_P0075003 Mblac1 protein_coding protein_coding MGP_C3HHeJ_T0004778.1 MGP_C3HHeJ_G0004107.1 mouse_genomes_project 5 137920591 137927624 + Gm42884 antisense antisense MGP_C3HHeJ_T0004779.1 MGP_C3HHeJ_G0004107.1 mouse_genomes_project 5 137925071 137927824 + Gm42884 antisense antisense MGP_C3HHeJ_T0004612.1 MGP_C3HHeJ_G0003987.1 mouse_genomes_project 5 42837627 42855450 + Gm42984 antisense antisense MGP_C3HHeJ_T0070919.1 MGP_C3HHeJ_G0029177.1 mouse_genomes_project 5 33843121 33854651 + MGP_C3HHeJ_P0070919 Hmx1 protein_coding protein_coding MGP_C3HHeJ_T0070920.1 MGP_C3HHeJ_G0029177.1 mouse_genomes_project 5 33843130 33846904 + MGP_C3HHeJ_P0070920 Hmx1 protein_coding protein_coding MGP_C3HHeJ_T0001502.1 MGP_C3HHeJ_G0001429.1 mouse_genomes_project 5 43149272 43150020 - TEC TEC MGP_C3HHeJ_T0070252.1 MGP_C3HHeJ_G0029074.1 mouse_genomes_project 5 27578691 27584128 - MGP_C3HHeJ_P0070252 Mnx1 protein_coding protein_coding MGP_C3HHeJ_T0070253.1 MGP_C3HHeJ_G0029074.1 mouse_genomes_project 5 27578918 27584128 - MGP_C3HHeJ_P0070253 Mnx1 protein_coding protein_coding MGP_C3HHeJ_T0014861.1 MGP_C3HHeJ_G0012965.1 mouse_genomes_project 5 83458315 83458682 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001578.1 MGP_C3HHeJ_G0001504.1 mouse_genomes_project 5 57237707 57238902 + TEC TEC MGP_C3HHeJ_T0008359.1 MGP_C3HHeJ_G0006774.1 mouse_genomes_project 5 152064171 152068559 + D5Ertd605e lincRNA lincRNA MGP_C3HHeJ_T0001471.1 MGP_C3HHeJ_G0001398.1 mouse_genomes_project 5 32886090 32889622 + TEC TEC MGP_C3HHeJ_T0071317.1 MGP_C3HHeJ_G0029246.1 mouse_genomes_project 5 51559207 51591958 - MGP_C3HHeJ_P0071317 Lgi2 protein_coding protein_coding MGP_C3HHeJ_T0071318.1 MGP_C3HHeJ_G0029246.1 mouse_genomes_project 5 51559207 51592118 - MGP_C3HHeJ_P0071318 Lgi2 protein_coding protein_coding MGP_C3HHeJ_T0008079.1 MGP_C3HHeJ_G0006580.1 mouse_genomes_project 5 73203926 73220637 - 1700025M24Rik lincRNA lincRNA MGP_C3HHeJ_T0008080.1 MGP_C3HHeJ_G0006580.1 mouse_genomes_project 5 73203926 73220625 - 1700025M24Rik lincRNA lincRNA MGP_C3HHeJ_T0008081.1 MGP_C3HHeJ_G0006580.1 mouse_genomes_project 5 73203944 73220631 - 1700025M24Rik lincRNA lincRNA MGP_C3HHeJ_T0071648.1 MGP_C3HHeJ_G0029302.1 mouse_genomes_project 5 69245041 69267522 - MGP_C3HHeJ_P0071648 Yipf7 protein_coding protein_coding MGP_C3HHeJ_T0071649.1 MGP_C3HHeJ_G0029302.1 mouse_genomes_project 5 69247680 69267463 - MGP_C3HHeJ_P0071649 Yipf7 protein_coding protein_coding MGP_C3HHeJ_T0071742.1 MGP_C3HHeJ_G0029321.1 mouse_genomes_project 5 72893399 72898964 + MGP_C3HHeJ_P0071742 Slc10a4 protein_coding protein_coding MGP_C3HHeJ_T0071743.1 MGP_C3HHeJ_G0029321.1 mouse_genomes_project 5 72893419 72898964 + MGP_C3HHeJ_P0071743 Slc10a4 protein_coding protein_coding MGP_C3HHeJ_T0074939.1 MGP_C3HHeJ_G0029942.1 mouse_genomes_project 5 141535472 141536576 - Pilrb1 protein_coding retained_intron MGP_C3HHeJ_T0074942.1 MGP_C3HHeJ_G0029942.1 mouse_genomes_project 5 141535472 141545523 - MGP_C3HHeJ_P0074942 Pilrb1 protein_coding protein_coding MGP_C3HHeJ_T0074943.1 MGP_C3HHeJ_G0029942.1 mouse_genomes_project 5 141535474 141545574 - MGP_C3HHeJ_P0074943 Pilrb1 protein_coding protein_coding MGP_C3HHeJ_T0072253.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92844123 92875320 - MGP_C3HHeJ_P0072253 G3bp2 protein_coding protein_coding MGP_C3HHeJ_T0072254.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92844141 92875482 - MGP_C3HHeJ_P0072254 G3bp2 protein_coding protein_coding MGP_C3HHeJ_T0072255.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92845694 92875001 - MGP_C3HHeJ_P0072255 G3bp2 protein_coding protein_coding MGP_C3HHeJ_T0072256.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92845694 92875276 - MGP_C3HHeJ_P0072256 G3bp2 protein_coding protein_coding MGP_C3HHeJ_T0072257.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92846477 92875421 - MGP_C3HHeJ_P0072257 G3bp2 protein_coding protein_coding MGP_C3HHeJ_T0072258.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92848338 92859504 - G3bp2 protein_coding processed_transcript MGP_C3HHeJ_T0072259.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92849796 92859495 - G3bp2 protein_coding retained_intron MGP_C3HHeJ_T0072260.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92858501 92865255 - MGP_C3HHeJ_P0072260 G3bp2 protein_coding protein_coding MGP_C3HHeJ_T0072261.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92860241 92875026 - MGP_C3HHeJ_P0072261 G3bp2 protein_coding protein_coding MGP_C3HHeJ_T0072262.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92861661 92875480 - G3bp2 protein_coding retained_intron MGP_C3HHeJ_T0073772.1 MGP_C3HHeJ_G0029743.1 mouse_genomes_project 5 125293097 125304146 + MGP_C3HHeJ_P0073772 Gpn3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073773.1 MGP_C3HHeJ_G0029743.1 mouse_genomes_project 5 125293672 125304207 + MGP_C3HHeJ_P0073773 Gpn3 protein_coding protein_coding MGP_C3HHeJ_T0073774.1 MGP_C3HHeJ_G0029743.1 mouse_genomes_project 5 125293748 125300032 + Gpn3 protein_coding retained_intron MGP_C3HHeJ_T0073775.1 MGP_C3HHeJ_G0029743.1 mouse_genomes_project 5 125295206 125303604 + MGP_C3HHeJ_P0073775 Gpn3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073776.1 MGP_C3HHeJ_G0029743.1 mouse_genomes_project 5 125302572 125304207 + MGP_C3HHeJ_P0073776 Gpn3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073777.1 MGP_C3HHeJ_G0029743.1 mouse_genomes_project 5 125302597 125303837 + MGP_C3HHeJ_P0073777 Gpn3 protein_coding protein_coding MGP_C3HHeJ_T0014910.1 MGP_C3HHeJ_G0013014.1 mouse_genomes_project 5 104987847 104988423 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098152.1 MGP_C3HHeJ_G0036364.1 mouse_genomes_project 5 122645983 122646092 + n-R5s176 rRNA rRNA MGP_C3HHeJ_T0070359.1 MGP_C3HHeJ_G0029095.1 mouse_genomes_project 5 29033146 29044315 + MGP_C3HHeJ_P0070359 Tmem214 protein_coding protein_coding MGP_C3HHeJ_T0070360.1 MGP_C3HHeJ_G0029095.1 mouse_genomes_project 5 29034765 29042179 + MGP_C3HHeJ_P0070360 Tmem214 protein_coding protein_coding MGP_C3HHeJ_T0070361.1 MGP_C3HHeJ_G0029095.1 mouse_genomes_project 5 29034767 29043499 + Tmem214 protein_coding retained_intron MGP_C3HHeJ_T0070362.1 MGP_C3HHeJ_G0029095.1 mouse_genomes_project 5 29034769 29042603 + Tmem214 protein_coding retained_intron MGP_C3HHeJ_T0070363.1 MGP_C3HHeJ_G0029095.1 mouse_genomes_project 5 29035498 29036620 + Tmem214 protein_coding retained_intron MGP_C3HHeJ_T0070364.1 MGP_C3HHeJ_G0029095.1 mouse_genomes_project 5 29036907 29038729 + Tmem214 protein_coding processed_transcript MGP_C3HHeJ_T0070365.1 MGP_C3HHeJ_G0029095.1 mouse_genomes_project 5 29036952 29042598 + Tmem214 protein_coding retained_intron MGP_C3HHeJ_T0069984.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19623633 20097891 - MGP_C3HHeJ_P0069984 Reln protein_coding protein_coding MGP_C3HHeJ_T0069985.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19624074 19636575 - Reln protein_coding processed_transcript MGP_C3HHeJ_T0069986.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19624429 20097879 - MGP_C3HHeJ_P0069986 Reln protein_coding protein_coding MGP_C3HHeJ_T0069987.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19630378 19634104 - Reln protein_coding retained_intron MGP_C3HHeJ_T0069988.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19635112 19639553 - Reln protein_coding processed_transcript MGP_C3HHeJ_T0069989.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19636139 19636495 - Reln protein_coding retained_intron MGP_C3HHeJ_T0069990.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19639230 19685238 - Reln protein_coding retained_intron MGP_C3HHeJ_T0069991.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19732743 19765988 - Reln protein_coding retained_intron MGP_C3HHeJ_T0069992.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19758763 20097879 - Reln protein_coding retained_intron MGP_C3HHeJ_T0069993.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19806529 19807759 - Reln protein_coding retained_intron MGP_C3HHeJ_T0069994.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19819308 19886546 - MGP_C3HHeJ_P0069994 Reln protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069995.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19879949 20097879 - Reln protein_coding retained_intron MGP_C3HHeJ_T0069996.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19926774 20097879 - Reln protein_coding retained_intron MGP_C3HHeJ_T0069997.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19972669 20097879 - Reln protein_coding retained_intron MGP_C3HHeJ_T0069998.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 20095259 20097891 - Reln protein_coding processed_transcript MGP_C3HHeJ_T0098508.1 MGP_C3HHeJ_G0036712.1 mouse_genomes_project 5 137634960 137635376 - Gm43480 sense_intronic sense_intronic MGP_C3HHeJ_T0071926.1 MGP_C3HHeJ_G0029350.1 mouse_genomes_project 5 77010166 77026297 + MGP_C3HHeJ_P0071926 Paics protein_coding protein_coding MGP_C3HHeJ_T0071927.1 MGP_C3HHeJ_G0029350.1 mouse_genomes_project 5 77010207 77026301 + MGP_C3HHeJ_P0071927 Paics protein_coding protein_coding MGP_C3HHeJ_T0071928.1 MGP_C3HHeJ_G0029350.1 mouse_genomes_project 5 77010227 77026105 + MGP_C3HHeJ_P0071928 Paics protein_coding protein_coding MGP_C3HHeJ_T0071929.1 MGP_C3HHeJ_G0029350.1 mouse_genomes_project 5 77010241 77018124 + MGP_C3HHeJ_P0071929 Paics protein_coding protein_coding MGP_C3HHeJ_T0071930.1 MGP_C3HHeJ_G0029350.1 mouse_genomes_project 5 77010636 77021253 + MGP_C3HHeJ_P0071930 Paics protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071931.1 MGP_C3HHeJ_G0029350.1 mouse_genomes_project 5 77020249 77021744 + Paics protein_coding retained_intron MGP_C3HHeJ_T0071932.1 MGP_C3HHeJ_G0029350.1 mouse_genomes_project 5 77024948 77025633 + Paics protein_coding retained_intron MGP_C3HHeJ_T0004746.1 MGP_C3HHeJ_G0004084.1 mouse_genomes_project 5 124906275 124912979 + Gm3970 antisense antisense MGP_C3HHeJ_T0014717.1 MGP_C3HHeJ_G0012821.1 mouse_genomes_project 5 20716790 20717409 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073993.1 MGP_C3HHeJ_G0029772.1 mouse_genomes_project 5 126757877 126763600 + Kntc1 protein_coding retained_intron MGP_C3HHeJ_T0073994.1 MGP_C3HHeJ_G0029772.1 mouse_genomes_project 5 126757887 126832774 + MGP_C3HHeJ_P0073994 Kntc1 protein_coding protein_coding MGP_C3HHeJ_T0073995.1 MGP_C3HHeJ_G0029772.1 mouse_genomes_project 5 126783954 126790818 + Kntc1 protein_coding processed_transcript MGP_C3HHeJ_T0073996.1 MGP_C3HHeJ_G0029772.1 mouse_genomes_project 5 126792364 126793255 + MGP_C3HHeJ_P0073996 Kntc1 protein_coding protein_coding MGP_C3HHeJ_T0073997.1 MGP_C3HHeJ_G0029772.1 mouse_genomes_project 5 126798328 126801243 + Kntc1 protein_coding retained_intron MGP_C3HHeJ_T0073998.1 MGP_C3HHeJ_G0029772.1 mouse_genomes_project 5 126822545 126832772 + MGP_C3HHeJ_P0073998 Kntc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073999.1 MGP_C3HHeJ_G0029772.1 mouse_genomes_project 5 126830729 126832773 + Kntc1 protein_coding retained_intron MGP_C3HHeJ_T0004692.1 MGP_C3HHeJ_G0004044.1 mouse_genomes_project 5 109074667 109085387 - Gm42902 antisense antisense MGP_C3HHeJ_T0008201.1 MGP_C3HHeJ_G0006668.1 mouse_genomes_project 5 113739607 113771135 - E130006D01Rik lincRNA lincRNA MGP_C3HHeJ_T0008202.1 MGP_C3HHeJ_G0006668.1 mouse_genomes_project 5 113739626 113771157 - E130006D01Rik lincRNA lincRNA MGP_C3HHeJ_T0008203.1 MGP_C3HHeJ_G0006668.1 mouse_genomes_project 5 113739733 113771132 - E130006D01Rik lincRNA lincRNA MGP_C3HHeJ_T0100687.1 MGP_C3HHeJ_G0038881.1 mouse_genomes_project 5 5374692 5374836 + Gm23993 snoRNA snoRNA MGP_C3HHeJ_T0070636.1 MGP_C3HHeJ_G0029134.1 mouse_genomes_project 5 30877334 30952721 + MGP_C3HHeJ_P0070636 Yes1 protein_coding protein_coding MGP_C3HHeJ_T0070637.1 MGP_C3HHeJ_G0029134.1 mouse_genomes_project 5 30877613 30952716 + MGP_C3HHeJ_P0070637 Yes1 protein_coding protein_coding MGP_C3HHeJ_T0070638.1 MGP_C3HHeJ_G0029134.1 mouse_genomes_project 5 30877627 30880369 + Yes1 protein_coding retained_intron MGP_C3HHeJ_T0070639.1 MGP_C3HHeJ_G0029134.1 mouse_genomes_project 5 30905396 30923229 + MGP_C3HHeJ_P0070639 Yes1 protein_coding protein_coding MGP_C3HHeJ_T0102037.1 MGP_C3HHeJ_G0040002.1 mouse_genomes_project 5 87584030 87585093 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014885.1 MGP_C3HHeJ_G0012989.1 mouse_genomes_project 5 92493940 92494315 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074587.1 MGP_C3HHeJ_G0029877.1 mouse_genomes_project 5 138863914 139009761 - MGP_C3HHeJ_P0074587 Hip1 protein_coding protein_coding MGP_C3HHeJ_T0074588.1 MGP_C3HHeJ_G0029877.1 mouse_genomes_project 5 138863918 138894737 - MGP_C3HHeJ_P0074588 Hip1 protein_coding protein_coding MGP_C3HHeJ_T0074589.1 MGP_C3HHeJ_G0029877.1 mouse_genomes_project 5 138888538 138889718 - Hip1 protein_coding retained_intron MGP_C3HHeJ_T0074590.1 MGP_C3HHeJ_G0029877.1 mouse_genomes_project 5 138889844 138899744 - MGP_C3HHeJ_P0074590 Hip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074591.1 MGP_C3HHeJ_G0029877.1 mouse_genomes_project 5 138894027 139009766 - Hip1 protein_coding retained_intron MGP_C3HHeJ_T0074592.1 MGP_C3HHeJ_G0029877.1 mouse_genomes_project 5 138898068 138912563 - Hip1 protein_coding processed_transcript MGP_C3HHeJ_T0074593.1 MGP_C3HHeJ_G0029877.1 mouse_genomes_project 5 138909009 138948787 - MGP_C3HHeJ_P0074593 Hip1 protein_coding protein_coding MGP_C3HHeJ_T0074594.1 MGP_C3HHeJ_G0029877.1 mouse_genomes_project 5 138912446 138918250 - Hip1 protein_coding retained_intron MGP_C3HHeJ_T0074595.1 MGP_C3HHeJ_G0029877.1 mouse_genomes_project 5 138919125 139009761 - Hip1 protein_coding retained_intron MGP_C3HHeJ_T0071642.1 MGP_C3HHeJ_G0029299.1 mouse_genomes_project 5 67600548 67635921 + MGP_C3HHeJ_P0071642 Gm5108 protein_coding protein_coding MGP_C3HHeJ_T0071643.1 MGP_C3HHeJ_G0029299.1 mouse_genomes_project 5 67600618 67635851 + Gm5108 protein_coding antisense MGP_C3HHeJ_T0071644.1 MGP_C3HHeJ_G0029299.1 mouse_genomes_project 5 67600618 67635856 + Gm5108 protein_coding antisense MGP_C3HHeJ_T0071055.1 MGP_C3HHeJ_G0029201.1 mouse_genomes_project 5 35819551 35909096 + MGP_C3HHeJ_P0071055 Evc2 protein_coding protein_coding MGP_C3HHeJ_T0071056.1 MGP_C3HHeJ_G0029201.1 mouse_genomes_project 5 35819660 35871814 + Evc2 protein_coding retained_intron MGP_C3HHeJ_T0071057.1 MGP_C3HHeJ_G0029201.1 mouse_genomes_project 5 35873962 35876074 + Evc2 protein_coding processed_transcript MGP_C3HHeJ_T0071058.1 MGP_C3HHeJ_G0029201.1 mouse_genomes_project 5 35899919 35901975 + Evc2 protein_coding retained_intron MGP_C3HHeJ_T0014685.1 MGP_C3HHeJ_G0012789.1 mouse_genomes_project 5 10008867 10010437 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010598.1 MGP_C3HHeJ_G0008731.1 mouse_genomes_project 5 64139757 64139874 - Gm25306 miRNA miRNA MGP_C3HHeJ_T0071372.1 MGP_C3HHeJ_G0029256.1 mouse_genomes_project 5 52937431 52971771 + MGP_C3HHeJ_P0071372 Tbc1d19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071373.1 MGP_C3HHeJ_G0029256.1 mouse_genomes_project 5 52937452 53032148 + MGP_C3HHeJ_P0071373 Tbc1d19 protein_coding protein_coding MGP_C3HHeJ_T0071374.1 MGP_C3HHeJ_G0029256.1 mouse_genomes_project 5 52937473 52964275 + Tbc1d19 protein_coding processed_transcript MGP_C3HHeJ_T0071375.1 MGP_C3HHeJ_G0029256.1 mouse_genomes_project 5 52937474 52958581 + Tbc1d19 protein_coding retained_intron MGP_C3HHeJ_T0071376.1 MGP_C3HHeJ_G0029256.1 mouse_genomes_project 5 52937479 53032146 + MGP_C3HHeJ_P0071376 Tbc1d19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071377.1 MGP_C3HHeJ_G0029256.1 mouse_genomes_project 5 52937504 52965814 + MGP_C3HHeJ_P0071377 Tbc1d19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071378.1 MGP_C3HHeJ_G0029256.1 mouse_genomes_project 5 52960411 52965756 + Tbc1d19 protein_coding retained_intron MGP_C3HHeJ_T0071379.1 MGP_C3HHeJ_G0029256.1 mouse_genomes_project 5 52964264 52975445 + Tbc1d19 protein_coding processed_transcript MGP_C3HHeJ_T0071380.1 MGP_C3HHeJ_G0029256.1 mouse_genomes_project 5 53019222 53031921 + Tbc1d19 protein_coding processed_transcript MGP_C3HHeJ_T0014754.1 MGP_C3HHeJ_G0012858.1 mouse_genomes_project 5 30747029 30747355 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075313.1 MGP_C3HHeJ_G0030025.1 mouse_genomes_project 5 147516968 147530820 - E130309D02Rik protein_coding processed_transcript MGP_C3HHeJ_T0075314.1 MGP_C3HHeJ_G0030025.1 mouse_genomes_project 5 147516980 147531116 - MGP_C3HHeJ_P0075314 E130309D02Rik protein_coding protein_coding MGP_C3HHeJ_T0075315.1 MGP_C3HHeJ_G0030025.1 mouse_genomes_project 5 147516982 147530887 - E130309D02Rik protein_coding retained_intron MGP_C3HHeJ_T0075316.1 MGP_C3HHeJ_G0030025.1 mouse_genomes_project 5 147524064 147531096 - E130309D02Rik protein_coding processed_transcript MGP_C3HHeJ_T0008243.1 MGP_C3HHeJ_G0006694.1 mouse_genomes_project 5 119222298 119225219 + Gm29926 lincRNA lincRNA MGP_C3HHeJ_T0001565.1 MGP_C3HHeJ_G0001491.1 mouse_genomes_project 5 53955556 53958257 + TEC TEC MGP_C3HHeJ_T0075212.1 MGP_C3HHeJ_G0030002.1 mouse_genomes_project 5 144755553 144770517 + MGP_C3HHeJ_P0075212 Brat1 protein_coding protein_coding MGP_C3HHeJ_T0075213.1 MGP_C3HHeJ_G0030002.1 mouse_genomes_project 5 144755565 144770468 + MGP_C3HHeJ_P0075213 Brat1 protein_coding protein_coding MGP_C3HHeJ_T0075214.1 MGP_C3HHeJ_G0030002.1 mouse_genomes_project 5 144755565 144770311 + MGP_C3HHeJ_P0075214 Brat1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075215.1 MGP_C3HHeJ_G0030002.1 mouse_genomes_project 5 144755592 144767073 + Brat1 protein_coding retained_intron MGP_C3HHeJ_T0075216.1 MGP_C3HHeJ_G0030002.1 mouse_genomes_project 5 144755594 144766797 + Brat1 protein_coding retained_intron MGP_C3HHeJ_T0075217.1 MGP_C3HHeJ_G0030002.1 mouse_genomes_project 5 144755608 144770517 + MGP_C3HHeJ_P0075217 Brat1 protein_coding protein_coding MGP_C3HHeJ_T0075286.1 MGP_C3HHeJ_G0030018.1 mouse_genomes_project 5 147178921 147303862 - MGP_C3HHeJ_P0075286 Rnf216 protein_coding protein_coding MGP_C3HHeJ_T0075287.1 MGP_C3HHeJ_G0030018.1 mouse_genomes_project 5 147179848 147303848 - MGP_C3HHeJ_P0075287 Rnf216 protein_coding protein_coding MGP_C3HHeJ_T0075288.1 MGP_C3HHeJ_G0030018.1 mouse_genomes_project 5 147180645 147287603 - MGP_C3HHeJ_P0075288 Rnf216 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075289.1 MGP_C3HHeJ_G0030018.1 mouse_genomes_project 5 147180677 147287603 - MGP_C3HHeJ_P0075289 Rnf216 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075290.1 MGP_C3HHeJ_G0030018.1 mouse_genomes_project 5 147199453 147200855 - Rnf216 protein_coding retained_intron MGP_C3HHeJ_T0075291.1 MGP_C3HHeJ_G0030018.1 mouse_genomes_project 5 147254417 147303848 - Rnf216 protein_coding retained_intron MGP_C3HHeJ_T0075292.1 MGP_C3HHeJ_G0030018.1 mouse_genomes_project 5 147270086 147276893 - Rnf216 protein_coding retained_intron MGP_C3HHeJ_T0075293.1 MGP_C3HHeJ_G0030018.1 mouse_genomes_project 5 147279338 147303848 - Rnf216 protein_coding processed_transcript MGP_C3HHeJ_T0075294.1 MGP_C3HHeJ_G0030018.1 mouse_genomes_project 5 147279527 147303850 - Rnf216 protein_coding processed_transcript MGP_C3HHeJ_T0008366.1 MGP_C3HHeJ_G0006781.1 mouse_genomes_project 5 153696689 153745909 - Gm15406 lincRNA lincRNA MGP_C3HHeJ_T0008368.1 MGP_C3HHeJ_G0006781.1 mouse_genomes_project 5 153702456 153745852 - Gm15406 lincRNA lincRNA MGP_C3HHeJ_T0071933.1 MGP_C3HHeJ_G0029351.1 mouse_genomes_project 5 77033236 77060437 + MGP_C3HHeJ_P0071933 Srp72 protein_coding protein_coding MGP_C3HHeJ_T0071934.1 MGP_C3HHeJ_G0029351.1 mouse_genomes_project 5 77033260 77059316 + MGP_C3HHeJ_P0071934 Srp72 protein_coding protein_coding MGP_C3HHeJ_T0071935.1 MGP_C3HHeJ_G0029351.1 mouse_genomes_project 5 77033274 77039103 + Srp72 protein_coding retained_intron MGP_C3HHeJ_T0071936.1 MGP_C3HHeJ_G0029351.1 mouse_genomes_project 5 77039091 77041228 + Srp72 protein_coding retained_intron MGP_C3HHeJ_T0071937.1 MGP_C3HHeJ_G0029351.1 mouse_genomes_project 5 77042608 77055650 + Srp72 protein_coding retained_intron MGP_C3HHeJ_T0071938.1 MGP_C3HHeJ_G0029351.1 mouse_genomes_project 5 77054496 77055407 + Srp72 protein_coding retained_intron MGP_C3HHeJ_T0071939.1 MGP_C3HHeJ_G0029351.1 mouse_genomes_project 5 77055759 77057989 + Srp72 protein_coding retained_intron MGP_C3HHeJ_T0071940.1 MGP_C3HHeJ_G0029351.1 mouse_genomes_project 5 77057474 77060437 + Srp72 protein_coding retained_intron MGP_C3HHeJ_T0071941.1 MGP_C3HHeJ_G0029351.1 mouse_genomes_project 5 77057904 77058841 + Srp72 protein_coding retained_intron MGP_C3HHeJ_T0071676.1 MGP_C3HHeJ_G0029307.1 mouse_genomes_project 5 71215560 71329751 - protein_coding processed_transcript MGP_C3HHeJ_T0071677.1 MGP_C3HHeJ_G0029307.1 mouse_genomes_project 5 71215715 71215947 - protein_coding transcribed_processed_pseudogene MGP_C3HHeJ_T0098142.1 MGP_C3HHeJ_G0036354.1 mouse_genomes_project 5 52199790 52199869 + n-R5s171 rRNA rRNA MGP_C3HHeJ_T0014957.1 MGP_C3HHeJ_G0013061.1 mouse_genomes_project 5 117822407 117822908 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014786.1 MGP_C3HHeJ_G0012890.1 mouse_genomes_project 5 46463031 46463479 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073547.1 MGP_C3HHeJ_G0029701.1 mouse_genomes_project 5 123142291 123206143 - MGP_C3HHeJ_P0073547 Tpcn1 protein_coding protein_coding MGP_C3HHeJ_T0073548.1 MGP_C3HHeJ_G0029701.1 mouse_genomes_project 5 123159448 123206082 - Tpcn1 protein_coding retained_intron MGP_C3HHeJ_T0073549.1 MGP_C3HHeJ_G0029701.1 mouse_genomes_project 5 123198939 123206064 - Tpcn1 protein_coding retained_intron MGP_C3HHeJ_T0073550.1 MGP_C3HHeJ_G0029701.1 mouse_genomes_project 5 123204626 123206069 - Tpcn1 protein_coding retained_intron MGP_C3HHeJ_T0073091.1 MGP_C3HHeJ_G0029614.1 mouse_genomes_project 5 115619632 115622426 + Wscd2 protein_coding retained_intron MGP_C3HHeJ_T0073092.1 MGP_C3HHeJ_G0029614.1 mouse_genomes_project 5 115619746 115715075 + MGP_C3HHeJ_P0073092 Wscd2 protein_coding protein_coding MGP_C3HHeJ_T0073093.1 MGP_C3HHeJ_G0029614.1 mouse_genomes_project 5 115620051 115677560 + Wscd2 protein_coding retained_intron MGP_C3HHeJ_T0073094.1 MGP_C3HHeJ_G0029614.1 mouse_genomes_project 5 115672931 115679454 + Wscd2 protein_coding retained_intron MGP_C3HHeJ_T0073095.1 MGP_C3HHeJ_G0029614.1 mouse_genomes_project 5 115695491 115715068 + Wscd2 protein_coding processed_transcript MGP_C3HHeJ_T0073096.1 MGP_C3HHeJ_G0029614.1 mouse_genomes_project 5 115703953 115707132 + Wscd2 protein_coding processed_transcript MGP_C3HHeJ_T0010620.1 MGP_C3HHeJ_G0008753.1 mouse_genomes_project 5 115444093 115444149 - Mir7230 miRNA miRNA MGP_C3HHeJ_T0014947.1 MGP_C3HHeJ_G0013051.1 mouse_genomes_project 5 115975656 115976024 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001698.1 MGP_C3HHeJ_G0001622.1 mouse_genomes_project 5 103110612 103113206 + TEC TEC MGP_C3HHeJ_T0071646.1 MGP_C3HHeJ_G0029301.1 mouse_genomes_project 5 68824696 69065217 - MGP_C3HHeJ_P0071646 Kctd8 protein_coding protein_coding MGP_C3HHeJ_T0071647.1 MGP_C3HHeJ_G0029301.1 mouse_genomes_project 5 69016340 69065215 - MGP_C3HHeJ_P0071647 Kctd8 protein_coding protein_coding MGP_C3HHeJ_T0014811.1 MGP_C3HHeJ_G0012915.1 mouse_genomes_project 5 58841853 58842232 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014895.1 MGP_C3HHeJ_G0012999.1 mouse_genomes_project 5 99246739 99247355 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014981.1 MGP_C3HHeJ_G0013085.1 mouse_genomes_project 5 139177896 139178766 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099458.1 MGP_C3HHeJ_G0037652.1 mouse_genomes_project 5 87442086 87442193 - Gm25211 snRNA snRNA MGP_C3HHeJ_T0014804.1 MGP_C3HHeJ_G0012908.1 mouse_genomes_project 5 56509756 56511106 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070763.1 MGP_C3HHeJ_G0029155.1 mouse_genomes_project 5 32367881 32369472 + MGP_C3HHeJ_P0070763 Gm1673 protein_coding protein_coding MGP_C3HHeJ_T0070764.1 MGP_C3HHeJ_G0029155.1 mouse_genomes_project 5 32367885 32369468 + Gm1673 protein_coding retained_intron MGP_C3HHeJ_T0070765.1 MGP_C3HHeJ_G0029155.1 mouse_genomes_project 5 32367918 32369468 + MGP_C3HHeJ_P0070765 Gm1673 protein_coding protein_coding MGP_C3HHeJ_T0070766.1 MGP_C3HHeJ_G0029155.1 mouse_genomes_project 5 32367922 32369465 + MGP_C3HHeJ_P0070766 Gm1673 protein_coding protein_coding MGP_C3HHeJ_T0070767.1 MGP_C3HHeJ_G0029155.1 mouse_genomes_project 5 32367958 32369469 + MGP_C3HHeJ_P0070767 Gm1673 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070768.1 MGP_C3HHeJ_G0029155.1 mouse_genomes_project 5 32367982 32369468 + MGP_C3HHeJ_P0070768 Gm1673 protein_coding protein_coding MGP_C3HHeJ_T0008310.1 MGP_C3HHeJ_G0006738.1 mouse_genomes_project 5 131664869 131666366 - 4930573I07Rik lincRNA lincRNA MGP_C3HHeJ_T0008311.1 MGP_C3HHeJ_G0006738.1 mouse_genomes_project 5 131664871 131666389 - 4930573I07Rik lincRNA lincRNA MGP_C3HHeJ_T0072130.1 MGP_C3HHeJ_G0029404.1 mouse_genomes_project 5 89034853 89044712 + MGP_C3HHeJ_P0072130 Amtn protein_coding protein_coding MGP_C3HHeJ_T0001737.1 MGP_C3HHeJ_G0001661.1 mouse_genomes_project 5 116299579 116301453 + TEC TEC MGP_C3HHeJ_T0099425.1 MGP_C3HHeJ_G0037619.1 mouse_genomes_project 5 22386999 22387100 - Gm22333 snRNA snRNA MGP_C3HHeJ_T0007965.1 MGP_C3HHeJ_G0006499.1 mouse_genomes_project 5 16064337 16072831 - Gm43030 lincRNA lincRNA MGP_C3HHeJ_T0100716.1 MGP_C3HHeJ_G0038910.1 mouse_genomes_project 5 93909303 93909439 + Gm22915 snoRNA snoRNA MGP_C3HHeJ_T0001594.1 MGP_C3HHeJ_G0001519.1 mouse_genomes_project 5 64852043 64853230 - TEC TEC MGP_C3HHeJ_T0001583.1 MGP_C3HHeJ_G0001509.1 mouse_genomes_project 5 57460050 57461897 - TEC TEC MGP_C3HHeJ_T0004824.1 MGP_C3HHeJ_G0004139.1 mouse_genomes_project 5 154890567 154906651 - Gm42557 antisense antisense MGP_C3HHeJ_T0014667.1 MGP_C3HHeJ_G0012771.1 mouse_genomes_project 5 2614798 2615228 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072129.1 MGP_C3HHeJ_G0029403.1 mouse_genomes_project 5 88960095 88972408 + MGP_C3HHeJ_P0072129 Prol1 protein_coding protein_coding MGP_C3HHeJ_T0072936.1 MGP_C3HHeJ_G0029584.1 mouse_genomes_project 5 112319568 112407162 - MGP_C3HHeJ_P0072936 Fbrsl1 protein_coding protein_coding MGP_C3HHeJ_T0072937.1 MGP_C3HHeJ_G0029584.1 mouse_genomes_project 5 112319575 112407498 - MGP_C3HHeJ_P0072937 Fbrsl1 protein_coding protein_coding MGP_C3HHeJ_T0072938.1 MGP_C3HHeJ_G0029584.1 mouse_genomes_project 5 112320612 112407481 - MGP_C3HHeJ_P0072938 Fbrsl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072939.1 MGP_C3HHeJ_G0029584.1 mouse_genomes_project 5 112336790 112392076 - MGP_C3HHeJ_P0072939 Fbrsl1 protein_coding protein_coding MGP_C3HHeJ_T0072940.1 MGP_C3HHeJ_G0029584.1 mouse_genomes_project 5 112388933 112390924 - Fbrsl1 protein_coding processed_transcript MGP_C3HHeJ_T0072941.1 MGP_C3HHeJ_G0029584.1 mouse_genomes_project 5 112391056 112392383 - Fbrsl1 protein_coding processed_transcript MGP_C3HHeJ_T0072942.1 MGP_C3HHeJ_G0029584.1 mouse_genomes_project 5 112391056 112407498 - MGP_C3HHeJ_P0072942 Fbrsl1 protein_coding protein_coding MGP_C3HHeJ_T0001407.1 MGP_C3HHeJ_G0001337.1 mouse_genomes_project 5 5986769 5987070 + TEC TEC MGP_C3HHeJ_T0074854.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141204101 141226719 + MGP_C3HHeJ_P0074854 Tfr2 protein_coding protein_coding MGP_C3HHeJ_T0074855.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141204112 141226721 + MGP_C3HHeJ_P0074855 Tfr2 protein_coding protein_coding MGP_C3HHeJ_T0074856.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141204125 141205624 + Tfr2 protein_coding retained_intron MGP_C3HHeJ_T0074857.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141204130 141226719 + MGP_C3HHeJ_P0074857 Tfr2 protein_coding protein_coding MGP_C3HHeJ_T0074858.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141204981 141226705 + MGP_C3HHeJ_P0074858 Tfr2 protein_coding protein_coding MGP_C3HHeJ_T0074859.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141205066 141226716 + MGP_C3HHeJ_P0074859 Tfr2 protein_coding protein_coding MGP_C3HHeJ_T0074860.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141205712 141208521 + Tfr2 protein_coding retained_intron MGP_C3HHeJ_T0074861.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141208613 141211844 + Tfr2 protein_coding retained_intron MGP_C3HHeJ_T0074862.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141215930 141217870 + MGP_C3HHeJ_P0074862 Tfr2 protein_coding protein_coding MGP_C3HHeJ_T0074863.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141222471 141226229 + Tfr2 protein_coding retained_intron MGP_C3HHeJ_T0074864.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141222471 141223296 + Tfr2 protein_coding retained_intron MGP_C3HHeJ_T0073813.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125648541 125673409 + MGP_C3HHeJ_P0073813 P2rx4 protein_coding protein_coding MGP_C3HHeJ_T0073814.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125648566 125653475 + P2rx4 protein_coding retained_intron MGP_C3HHeJ_T0073815.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125648567 125662069 + P2rx4 protein_coding retained_intron MGP_C3HHeJ_T0073816.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125648577 125669047 + MGP_C3HHeJ_P0073816 P2rx4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073817.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125648581 125672715 + MGP_C3HHeJ_P0073817 P2rx4 protein_coding protein_coding MGP_C3HHeJ_T0073818.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125648651 125671984 + MGP_C3HHeJ_P0073818 P2rx4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0073819.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125648651 125671994 + MGP_C3HHeJ_P0073819 P2rx4 protein_coding protein_coding MGP_C3HHeJ_T0073820.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125648651 125671994 + MGP_C3HHeJ_P0073820 P2rx4 protein_coding protein_coding MGP_C3HHeJ_T0073821.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125668335 125668946 + P2rx4 protein_coding retained_intron MGP_C3HHeJ_T0073822.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125671334 125672256 + P2rx4 protein_coding processed_transcript MGP_C3HHeJ_T0070135.1 MGP_C3HHeJ_G0029047.1 mouse_genomes_project 5 22524678 22536648 - MGP_C3HHeJ_P0070135 Abcf2 protein_coding protein_coding MGP_C3HHeJ_T0014896.1 MGP_C3HHeJ_G0013000.1 mouse_genomes_project 5 99334510 99335506 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075636.1 MGP_C3HHeJ_G0030095.1 mouse_genomes_project 5 153801957 153809808 - MGP_C3HHeJ_P0075636 Hmgb1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0075637.1 MGP_C3HHeJ_G0030095.1 mouse_genomes_project 5 153803223 153807493 - MGP_C3HHeJ_P0075637 Hmgb1 protein_coding protein_coding MGP_C3HHeJ_T0075638.1 MGP_C3HHeJ_G0030095.1 mouse_genomes_project 5 153803223 153959423 - MGP_C3HHeJ_P0075638 Hmgb1 protein_coding protein_coding MGP_C3HHeJ_T0075639.1 MGP_C3HHeJ_G0030095.1 mouse_genomes_project 5 153803540 153804835 - Hmgb1 protein_coding retained_intron MGP_C3HHeJ_T0075640.1 MGP_C3HHeJ_G0030095.1 mouse_genomes_project 5 153803788 153809760 - MGP_C3HHeJ_P0075640 Hmgb1 protein_coding protein_coding MGP_C3HHeJ_T0075641.1 MGP_C3HHeJ_G0030095.1 mouse_genomes_project 5 153804211 153809135 - MGP_C3HHeJ_P0075641 Hmgb1 protein_coding protein_coding MGP_C3HHeJ_T0075642.1 MGP_C3HHeJ_G0030095.1 mouse_genomes_project 5 153804455 153809765 - Hmgb1 protein_coding retained_intron MGP_C3HHeJ_T0075643.1 MGP_C3HHeJ_G0030095.1 mouse_genomes_project 5 153804702 153810264 - MGP_C3HHeJ_P0075643 Hmgb1 protein_coding protein_coding MGP_C3HHeJ_T0075644.1 MGP_C3HHeJ_G0030095.1 mouse_genomes_project 5 153804760 153809730 - Hmgb1 protein_coding retained_intron MGP_C3HHeJ_T0102049.1 MGP_C3HHeJ_G0040014.1 mouse_genomes_project 5 101478705 101626723 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004694.1 MGP_C3HHeJ_G0004046.1 mouse_genomes_project 5 109314596 109319091 - A930041C12Rik antisense antisense MGP_C3HHeJ_T0073174.1 MGP_C3HHeJ_G0029630.1 mouse_genomes_project 5 116457399 116477064 - MGP_C3HHeJ_P0073174 Foxn4 protein_coding protein_coding MGP_C3HHeJ_T0073175.1 MGP_C3HHeJ_G0029630.1 mouse_genomes_project 5 116458820 116466384 - MGP_C3HHeJ_P0073175 Foxn4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073176.1 MGP_C3HHeJ_G0029630.1 mouse_genomes_project 5 116463602 116476959 - MGP_C3HHeJ_P0073176 Foxn4 protein_coding protein_coding MGP_C3HHeJ_T0073177.1 MGP_C3HHeJ_G0029630.1 mouse_genomes_project 5 116465969 116477006 - Foxn4 protein_coding retained_intron MGP_C3HHeJ_T0010604.1 MGP_C3HHeJ_G0008737.1 mouse_genomes_project 5 75942105 75942206 + Gm25374 miRNA miRNA MGP_C3HHeJ_T0001591.1 MGP_C3HHeJ_G0001516.1 mouse_genomes_project 5 63972206 63973148 + TEC TEC MGP_C3HHeJ_T0069659.1 MGP_C3HHeJ_G0028966.1 mouse_genomes_project 5 718204 738612 + MGP_C3HHeJ_P0069659 Lrrd1 protein_coding protein_coding MGP_C3HHeJ_T0069660.1 MGP_C3HHeJ_G0028966.1 mouse_genomes_project 5 718218 723219 + MGP_C3HHeJ_P0069660 Lrrd1 protein_coding protein_coding MGP_C3HHeJ_T0074698.1 MGP_C3HHeJ_G0029897.1 mouse_genomes_project 5 139688203 139708364 - MGP_C3HHeJ_P0074698 Orai2 protein_coding protein_coding MGP_C3HHeJ_T0074699.1 MGP_C3HHeJ_G0029897.1 mouse_genomes_project 5 139688208 139708279 - MGP_C3HHeJ_P0074699 Orai2 protein_coding protein_coding MGP_C3HHeJ_T0074700.1 MGP_C3HHeJ_G0029897.1 mouse_genomes_project 5 139691532 139708285 - MGP_C3HHeJ_P0074700 Orai2 protein_coding protein_coding MGP_C3HHeJ_T0074701.1 MGP_C3HHeJ_G0029897.1 mouse_genomes_project 5 139703910 139708284 - Orai2 protein_coding retained_intron MGP_C3HHeJ_T0072820.1 MGP_C3HHeJ_G0029558.1 mouse_genomes_project 5 110428244 110442639 + MGP_C3HHeJ_P0072820 Tmem175 protein_coding protein_coding MGP_C3HHeJ_T0072821.1 MGP_C3HHeJ_G0029558.1 mouse_genomes_project 5 110428306 110447390 + MGP_C3HHeJ_P0072821 Tmem175 protein_coding protein_coding MGP_C3HHeJ_T0072822.1 MGP_C3HHeJ_G0029558.1 mouse_genomes_project 5 110428473 110445866 + MGP_C3HHeJ_P0072822 Tmem175 protein_coding protein_coding MGP_C3HHeJ_T0072823.1 MGP_C3HHeJ_G0029558.1 mouse_genomes_project 5 110428480 110445274 + MGP_C3HHeJ_P0072823 Tmem175 protein_coding protein_coding MGP_C3HHeJ_T0072824.1 MGP_C3HHeJ_G0029558.1 mouse_genomes_project 5 110440290 110441804 + Tmem175 protein_coding retained_intron MGP_C3HHeJ_T0072825.1 MGP_C3HHeJ_G0029558.1 mouse_genomes_project 5 110442933 110443716 + Tmem175 protein_coding processed_transcript MGP_C3HHeJ_T0072226.1 MGP_C3HHeJ_G0029432.1 mouse_genomes_project 5 91666841 91673434 + Mthfd2l protein_coding processed_transcript MGP_C3HHeJ_T0072227.1 MGP_C3HHeJ_G0029432.1 mouse_genomes_project 5 91666980 91669146 + MGP_C3HHeJ_P0072227 Mthfd2l protein_coding protein_coding MGP_C3HHeJ_T0072228.1 MGP_C3HHeJ_G0029432.1 mouse_genomes_project 5 91667004 91758121 + MGP_C3HHeJ_P0072228 Mthfd2l protein_coding protein_coding MGP_C3HHeJ_T0072229.1 MGP_C3HHeJ_G0029432.1 mouse_genomes_project 5 91683298 91710900 + Mthfd2l protein_coding retained_intron MGP_C3HHeJ_T0010588.1 MGP_C3HHeJ_G0008721.1 mouse_genomes_project 5 32994561 32994624 + Mir7036b miRNA miRNA MGP_C3HHeJ_T0070177.1 MGP_C3HHeJ_G0029057.1 mouse_genomes_project 5 23209097 23209403 - MGP_C3HHeJ_P0070177 E130116L18Rik protein_coding protein_coding MGP_C3HHeJ_T0073504.1 MGP_C3HHeJ_G0029692.1 mouse_genomes_project 5 121069643 121235156 + Med13l protein_coding retained_intron MGP_C3HHeJ_T0073505.1 MGP_C3HHeJ_G0029692.1 mouse_genomes_project 5 121069683 121281579 + MGP_C3HHeJ_P0073505 Med13l protein_coding protein_coding MGP_C3HHeJ_T0073506.1 MGP_C3HHeJ_G0029692.1 mouse_genomes_project 5 121069703 121280056 + MGP_C3HHeJ_P0073506 Med13l protein_coding protein_coding MGP_C3HHeJ_T0073507.1 MGP_C3HHeJ_G0029692.1 mouse_genomes_project 5 121070551 121106023 + Med13l protein_coding processed_transcript MGP_C3HHeJ_T0073508.1 MGP_C3HHeJ_G0029692.1 mouse_genomes_project 5 121263500 121280056 + Med13l protein_coding retained_intron MGP_C3HHeJ_T0073509.1 MGP_C3HHeJ_G0029692.1 mouse_genomes_project 5 121266508 121280056 + Med13l protein_coding retained_intron MGP_C3HHeJ_T0008158.1 MGP_C3HHeJ_G0006642.1 mouse_genomes_project 5 105626094 105633511 - Gm42792 lincRNA lincRNA MGP_C3HHeJ_T0073533.1 MGP_C3HHeJ_G0029698.1 mouse_genomes_project 5 123081205 123088586 + MGP_C3HHeJ_P0073533 Sds protein_coding protein_coding MGP_C3HHeJ_T0073534.1 MGP_C3HHeJ_G0029698.1 mouse_genomes_project 5 123081210 123088586 + MGP_C3HHeJ_P0073534 Sds protein_coding protein_coding MGP_C3HHeJ_T0073535.1 MGP_C3HHeJ_G0029698.1 mouse_genomes_project 5 123083539 123085341 + MGP_C3HHeJ_P0073535 Sds protein_coding protein_coding MGP_C3HHeJ_T0073536.1 MGP_C3HHeJ_G0029698.1 mouse_genomes_project 5 123085016 123085542 + Sds protein_coding retained_intron MGP_C3HHeJ_T0017947.1 MGP_C3HHeJ_G0015369.1 mouse_genomes_project 5 109413807 109415744 + A430072P03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017948.1 MGP_C3HHeJ_G0015369.1 mouse_genomes_project 5 109415037 109417441 + A430072P03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0100699.1 MGP_C3HHeJ_G0038893.1 mouse_genomes_project 5 57696661 57696795 + Gm22536 snoRNA snoRNA MGP_C3HHeJ_T0074039.1 MGP_C3HHeJ_G0029782.1 mouse_genomes_project 5 127147566 127148520 + MGP_C3HHeJ_P0074039 Arl6ip4 protein_coding protein_coding MGP_C3HHeJ_T0074040.1 MGP_C3HHeJ_G0029782.1 mouse_genomes_project 5 127147576 127149674 + MGP_C3HHeJ_P0074040 Arl6ip4 protein_coding protein_coding MGP_C3HHeJ_T0074041.1 MGP_C3HHeJ_G0029782.1 mouse_genomes_project 5 127147599 127149574 + MGP_C3HHeJ_P0074041 Arl6ip4 protein_coding protein_coding MGP_C3HHeJ_T0074042.1 MGP_C3HHeJ_G0029782.1 mouse_genomes_project 5 127148156 127149512 + MGP_C3HHeJ_P0074042 Arl6ip4 protein_coding protein_coding MGP_C3HHeJ_T0074043.1 MGP_C3HHeJ_G0029782.1 mouse_genomes_project 5 127148788 127149669 + MGP_C3HHeJ_P0074043 Arl6ip4 protein_coding protein_coding MGP_C3HHeJ_T0072274.1 MGP_C3HHeJ_G0029445.1 mouse_genomes_project 5 93063829 93084121 - MGP_C3HHeJ_P0072274 Naaa protein_coding protein_coding MGP_C3HHeJ_T0072275.1 MGP_C3HHeJ_G0029445.1 mouse_genomes_project 5 93063834 93068877 - Naaa protein_coding retained_intron MGP_C3HHeJ_T0072276.1 MGP_C3HHeJ_G0029445.1 mouse_genomes_project 5 93064578 93084116 - MGP_C3HHeJ_P0072276 Naaa protein_coding protein_coding MGP_C3HHeJ_T0072277.1 MGP_C3HHeJ_G0029445.1 mouse_genomes_project 5 93065689 93078653 - MGP_C3HHeJ_P0072277 Naaa protein_coding protein_coding MGP_C3HHeJ_T0072278.1 MGP_C3HHeJ_G0029445.1 mouse_genomes_project 5 93081767 93084116 - Naaa protein_coding retained_intron MGP_C3HHeJ_T0075118.1 MGP_C3HHeJ_G0029979.1 mouse_genomes_project 5 143299301 143406484 - MGP_C3HHeJ_P0075118 3110082I17Rik protein_coding protein_coding MGP_C3HHeJ_T0075119.1 MGP_C3HHeJ_G0029979.1 mouse_genomes_project 5 143299301 143406509 - MGP_C3HHeJ_P0075119 3110082I17Rik protein_coding protein_coding MGP_C3HHeJ_T0075120.1 MGP_C3HHeJ_G0029979.1 mouse_genomes_project 5 143303186 143406493 - 3110082I17Rik protein_coding retained_intron MGP_C3HHeJ_T0075130.1 MGP_C3HHeJ_G0029979.1 mouse_genomes_project 5 143357380 143401524 - 3110082I17Rik protein_coding processed_transcript MGP_C3HHeJ_T0001593.1 MGP_C3HHeJ_G0001518.1 mouse_genomes_project 5 64499753 64502051 + TEC TEC MGP_C3HHeJ_T0001531.1 MGP_C3HHeJ_G0001457.1 mouse_genomes_project 5 47850373 47852320 - TEC TEC MGP_C3HHeJ_T0001746.1 MGP_C3HHeJ_G0001670.1 mouse_genomes_project 5 118894087 118895430 - TEC TEC MGP_C3HHeJ_T0001540.1 MGP_C3HHeJ_G0001466.1 mouse_genomes_project 5 47991363 47994260 - TEC TEC MGP_C3HHeJ_T0069597.1 MGP_C3HHeJ_G0028957.1 mouse_genomes_project 5 192059 195028 + MGP_C3HHeJ_P0069597 Cdk6 protein_coding protein_coding MGP_C3HHeJ_T0069598.1 MGP_C3HHeJ_G0028957.1 mouse_genomes_project 5 194306 195012 + MGP_C3HHeJ_P0069598 Cdk6 protein_coding protein_coding MGP_C3HHeJ_T0069599.1 MGP_C3HHeJ_G0028957.1 mouse_genomes_project 5 194490 248108 + MGP_C3HHeJ_P0069599 Cdk6 protein_coding protein_coding MGP_C3HHeJ_T0069600.1 MGP_C3HHeJ_G0028957.1 mouse_genomes_project 5 194886 386407 + MGP_C3HHeJ_P0069600 Cdk6 protein_coding protein_coding MGP_C3HHeJ_T0069601.1 MGP_C3HHeJ_G0028957.1 mouse_genomes_project 5 333602 335827 + Cdk6 protein_coding retained_intron MGP_C3HHeJ_T0075562.1 MGP_C3HHeJ_G0030083.1 mouse_genomes_project 5 151935674 151942140 - MGP_C3HHeJ_P0075562 Cdx2 protein_coding protein_coding MGP_C3HHeJ_T0004637.1 MGP_C3HHeJ_G0004008.1 mouse_genomes_project 5 67516473 67577362 + Gm15477 antisense antisense MGP_C3HHeJ_T0004638.1 MGP_C3HHeJ_G0004008.1 mouse_genomes_project 5 67516541 67572838 + Gm15477 antisense antisense MGP_C3HHeJ_T0010584.1 MGP_C3HHeJ_G0008717.1 mouse_genomes_project 5 28339089 28339167 + Mir1960 miRNA miRNA MGP_C3HHeJ_T0001827.1 MGP_C3HHeJ_G0001750.1 mouse_genomes_project 5 135459477 135460807 - TEC TEC MGP_C3HHeJ_T0001724.1 MGP_C3HHeJ_G0001648.1 mouse_genomes_project 5 113318983 113319790 - TEC TEC MGP_C3HHeJ_T0004571.1 MGP_C3HHeJ_G0003955.1 mouse_genomes_project 5 22277059 22280353 + Gm15589 antisense antisense MGP_C3HHeJ_T0007993.1 MGP_C3HHeJ_G0006515.1 mouse_genomes_project 5 26557896 26572149 + Gm26894 lincRNA lincRNA MGP_C3HHeJ_T0072793.1 MGP_C3HHeJ_G0029552.1 mouse_genomes_project 5 110170543 110215298 + MGP_C3HHeJ_P0072793 Pde6b protein_coding protein_coding MGP_C3HHeJ_T0072794.1 MGP_C3HHeJ_G0029552.1 mouse_genomes_project 5 110170578 110215222 + Pde6b protein_coding retained_intron MGP_C3HHeJ_T0072795.1 MGP_C3HHeJ_G0029552.1 mouse_genomes_project 5 110213930 110215953 + Pde6b protein_coding retained_intron MGP_C3HHeJ_T0014748.1 MGP_C3HHeJ_G0012852.1 mouse_genomes_project 5 27940099 27940787 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001627.1 MGP_C3HHeJ_G0001552.1 mouse_genomes_project 5 66766382 66769009 + TEC TEC MGP_C3HHeJ_T0074871.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141250079 141256385 - Pcolce protein_coding retained_intron MGP_C3HHeJ_T0074872.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141250079 141256464 - MGP_C3HHeJ_P0074872 Pcolce protein_coding protein_coding MGP_C3HHeJ_T0074873.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141250081 141250775 - Pcolce protein_coding retained_intron MGP_C3HHeJ_T0074874.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141250081 141255451 - MGP_C3HHeJ_P0074874 Pcolce protein_coding protein_coding MGP_C3HHeJ_T0074875.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141250084 141256353 - MGP_C3HHeJ_P0074875 Pcolce protein_coding protein_coding MGP_C3HHeJ_T0074876.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141251994 141253169 - Pcolce protein_coding retained_intron MGP_C3HHeJ_T0074877.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141252061 141256320 - Pcolce protein_coding processed_transcript MGP_C3HHeJ_T0074878.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141252410 141255679 - MGP_C3HHeJ_P0074878 Pcolce protein_coding protein_coding MGP_C3HHeJ_T0074879.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141252486 141258749 - MGP_C3HHeJ_P0074879 Pcolce protein_coding protein_coding MGP_C3HHeJ_T0074880.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141252486 141258771 - MGP_C3HHeJ_P0074880 Pcolce protein_coding protein_coding MGP_C3HHeJ_T0074881.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141252697 141256296 - Pcolce protein_coding retained_intron MGP_C3HHeJ_T0074882.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141253915 141256303 - Pcolce protein_coding processed_transcript MGP_C3HHeJ_T0014822.1 MGP_C3HHeJ_G0012926.1 mouse_genomes_project 5 61402598 61403214 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075181.1 MGP_C3HHeJ_G0029995.1 mouse_genomes_project 5 144340317 144394254 - MGP_C3HHeJ_P0075181 Snx8 protein_coding protein_coding MGP_C3HHeJ_T0075182.1 MGP_C3HHeJ_G0029995.1 mouse_genomes_project 5 144340322 144361406 - MGP_C3HHeJ_P0075182 Snx8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075183.1 MGP_C3HHeJ_G0029995.1 mouse_genomes_project 5 144353779 144354538 - Snx8 protein_coding retained_intron MGP_C3HHeJ_T0075184.1 MGP_C3HHeJ_G0029995.1 mouse_genomes_project 5 144354455 144367989 - MGP_C3HHeJ_P0075184 Snx8 protein_coding protein_coding MGP_C3HHeJ_T0075185.1 MGP_C3HHeJ_G0029995.1 mouse_genomes_project 5 144354471 144394254 - MGP_C3HHeJ_P0075185 Snx8 protein_coding protein_coding MGP_C3HHeJ_T0010607.1 MGP_C3HHeJ_G0008740.1 mouse_genomes_project 5 83888824 83888907 + Gm44303 miRNA miRNA MGP_C3HHeJ_T0014976.1 MGP_C3HHeJ_G0013080.1 mouse_genomes_project 5 136817148 136818114 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099450.1 MGP_C3HHeJ_G0037644.1 mouse_genomes_project 5 75584167 75584272 - Gm24502 snRNA snRNA MGP_C3HHeJ_T0075330.1 MGP_C3HHeJ_G0030027.1 mouse_genomes_project 5 147576667 147611604 + MGP_C3HHeJ_P0075330 Grid2ip protein_coding protein_coding MGP_C3HHeJ_T0075331.1 MGP_C3HHeJ_G0030027.1 mouse_genomes_project 5 147583121 147611634 + MGP_C3HHeJ_P0075331 Grid2ip protein_coding protein_coding MGP_C3HHeJ_T0075332.1 MGP_C3HHeJ_G0030027.1 mouse_genomes_project 5 147588901 147611988 + MGP_C3HHeJ_P0075332 Grid2ip protein_coding protein_coding MGP_C3HHeJ_T0075333.1 MGP_C3HHeJ_G0030027.1 mouse_genomes_project 5 147591783 147594543 + Grid2ip protein_coding retained_intron MGP_C3HHeJ_T0075334.1 MGP_C3HHeJ_G0030027.1 mouse_genomes_project 5 147594270 147600185 + Grid2ip protein_coding retained_intron MGP_C3HHeJ_T0014960.1 MGP_C3HHeJ_G0013064.1 mouse_genomes_project 5 119727402 119727780 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074770.1 MGP_C3HHeJ_G0029909.1 mouse_genomes_project 5 140626437 140637538 - MGP_C3HHeJ_P0074770 Ap1s1 protein_coding protein_coding MGP_C3HHeJ_T0074771.1 MGP_C3HHeJ_G0029909.1 mouse_genomes_project 5 140626786 140629094 - Ap1s1 protein_coding retained_intron MGP_C3HHeJ_T0074772.1 MGP_C3HHeJ_G0029909.1 mouse_genomes_project 5 140628822 140637198 - MGP_C3HHeJ_P0074772 Ap1s1 protein_coding protein_coding MGP_C3HHeJ_T0074773.1 MGP_C3HHeJ_G0029909.1 mouse_genomes_project 5 140628839 140637445 - MGP_C3HHeJ_P0074773 Ap1s1 protein_coding protein_coding MGP_C3HHeJ_T0074774.1 MGP_C3HHeJ_G0029909.1 mouse_genomes_project 5 140634470 140636810 - MGP_C3HHeJ_P0074774 Ap1s1 protein_coding protein_coding MGP_C3HHeJ_T0072610.1 MGP_C3HHeJ_G0029515.1 mouse_genomes_project 5 106312301 106398380 - protein_coding processed_transcript MGP_C3HHeJ_T0008026.1 MGP_C3HHeJ_G0006535.1 mouse_genomes_project 5 37790900 37845190 - Gm43453 lincRNA lincRNA MGP_C3HHeJ_T0071315.1 MGP_C3HHeJ_G0029245.1 mouse_genomes_project 5 51393086 51492159 - MGP_C3HHeJ_P0071315 Ccdc149 protein_coding protein_coding MGP_C3HHeJ_T0071316.1 MGP_C3HHeJ_G0029245.1 mouse_genomes_project 5 51393092 51492282 - MGP_C3HHeJ_P0071316 Ccdc149 protein_coding protein_coding MGP_C3HHeJ_T0001459.1 MGP_C3HHeJ_G0001387.1 mouse_genomes_project 5 29956944 29957176 + TEC TEC MGP_C3HHeJ_T0072530.1 MGP_C3HHeJ_G0029496.1 mouse_genomes_project 5 103162027 103252561 - MGP_C3HHeJ_P0072530 protein_coding unknown_likely_coding MGP_C3HHeJ_T0072531.1 MGP_C3HHeJ_G0029496.1 mouse_genomes_project 5 103162028 103401635 - MGP_C3HHeJ_P0072531 protein_coding protein_coding MGP_C3HHeJ_T0072532.1 MGP_C3HHeJ_G0029496.1 mouse_genomes_project 5 103164009 103180491 - protein_coding retained_intron MGP_C3HHeJ_T0072533.1 MGP_C3HHeJ_G0029496.1 mouse_genomes_project 5 103165230 103310484 - MGP_C3HHeJ_P0072533 protein_coding protein_coding MGP_C3HHeJ_T0072534.1 MGP_C3HHeJ_G0029496.1 mouse_genomes_project 5 103253000 103261037 - MGP_C3HHeJ_P0072534 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072535.1 MGP_C3HHeJ_G0029496.1 mouse_genomes_project 5 103259489 103401635 - MGP_C3HHeJ_P0072535 protein_coding protein_coding MGP_C3HHeJ_T0072536.1 MGP_C3HHeJ_G0029496.1 mouse_genomes_project 5 103265264 103267860 - protein_coding processed_transcript MGP_C3HHeJ_T0014735.1 MGP_C3HHeJ_G0012839.1 mouse_genomes_project 5 23729105 23729466 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099470.1 MGP_C3HHeJ_G0037664.1 mouse_genomes_project 5 107688961 107689068 - Gm25672 snRNA snRNA MGP_C3HHeJ_T0073758.1 MGP_C3HHeJ_G0029740.1 mouse_genomes_project 5 125236766 125269515 - MGP_C3HHeJ_P0073758 Rad9b protein_coding protein_coding MGP_C3HHeJ_T0073759.1 MGP_C3HHeJ_G0029740.1 mouse_genomes_project 5 125236876 125266649 - MGP_C3HHeJ_P0073759 Rad9b protein_coding protein_coding MGP_C3HHeJ_T0073760.1 MGP_C3HHeJ_G0029740.1 mouse_genomes_project 5 125236878 125269588 - MGP_C3HHeJ_P0073760 Rad9b protein_coding protein_coding MGP_C3HHeJ_T0073761.1 MGP_C3HHeJ_G0029740.1 mouse_genomes_project 5 125266626 125268140 - MGP_C3HHeJ_P0073761 Rad9b protein_coding protein_coding MGP_C3HHeJ_T0073762.1 MGP_C3HHeJ_G0029740.1 mouse_genomes_project 5 125267849 125269575 - Rad9b protein_coding retained_intron MGP_C3HHeJ_T0017944.1 MGP_C3HHeJ_G0015367.1 mouse_genomes_project 5 91286577 91324094 - Gm43448 processed_transcript processed_transcript MGP_C3HHeJ_T0017945.1 MGP_C3HHeJ_G0015367.1 mouse_genomes_project 5 91304857 91324114 - Gm43448 processed_transcript processed_transcript MGP_C3HHeJ_T0072799.1 MGP_C3HHeJ_G0029554.1 mouse_genomes_project 5 110227259 110235757 - MGP_C3HHeJ_P0072799 Mfsd7a protein_coding protein_coding MGP_C3HHeJ_T0017897.1 MGP_C3HHeJ_G0015351.1 mouse_genomes_project 5 23081300 23083238 + 2900005J15Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017898.1 MGP_C3HHeJ_G0015351.1 mouse_genomes_project 5 23081775 23091396 + 2900005J15Rik processed_transcript processed_transcript MGP_C3HHeJ_T0008204.1 MGP_C3HHeJ_G0006669.1 mouse_genomes_project 5 113749513 113756406 + Gm16019 lincRNA lincRNA MGP_C3HHeJ_T0075138.1 MGP_C3HHeJ_G0029984.1 mouse_genomes_project 5 143494776 143499419 + MGP_C3HHeJ_P0075138 Uncx protein_coding protein_coding MGP_C3HHeJ_T0075139.1 MGP_C3HHeJ_G0029984.1 mouse_genomes_project 5 143495180 143496551 + MGP_C3HHeJ_P0075139 Uncx protein_coding protein_coding MGP_C3HHeJ_T0075115.1 MGP_C3HHeJ_G0029978.1 mouse_genomes_project 5 143291664 143294187 + Cyp2w1 protein_coding retained_intron MGP_C3HHeJ_T0075116.1 MGP_C3HHeJ_G0029978.1 mouse_genomes_project 5 143291664 143296598 + MGP_C3HHeJ_P0075116 Cyp2w1 protein_coding protein_coding MGP_C3HHeJ_T0075117.1 MGP_C3HHeJ_G0029978.1 mouse_genomes_project 5 143294140 143296232 + MGP_C3HHeJ_P0075117 Cyp2w1 protein_coding protein_coding MGP_C3HHeJ_T0070259.1 MGP_C3HHeJ_G0029076.1 mouse_genomes_project 5 27861558 27861858 - MGP_C3HHeJ_P0070259 Gm5129 protein_coding protein_coding MGP_C3HHeJ_T0069610.1 MGP_C3HHeJ_G0028959.1 mouse_genomes_project 5 435636 448408 + MGP_C3HHeJ_P0069610 1700109H08Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069611.1 MGP_C3HHeJ_G0028959.1 mouse_genomes_project 5 435743 448423 + MGP_C3HHeJ_P0069611 1700109H08Rik protein_coding protein_coding MGP_C3HHeJ_T0069612.1 MGP_C3HHeJ_G0028959.1 mouse_genomes_project 5 439754 448423 + MGP_C3HHeJ_P0069612 1700109H08Rik protein_coding protein_coding MGP_C3HHeJ_T0069613.1 MGP_C3HHeJ_G0028959.1 mouse_genomes_project 5 442289 444516 + 1700109H08Rik protein_coding retained_intron MGP_C3HHeJ_T0069614.1 MGP_C3HHeJ_G0028959.1 mouse_genomes_project 5 444564 448411 + MGP_C3HHeJ_P0069614 1700109H08Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010646.1 MGP_C3HHeJ_G0008779.1 mouse_genomes_project 5 141860198 141860280 - Mir106b miRNA miRNA MGP_C3HHeJ_T0014783.1 MGP_C3HHeJ_G0012887.1 mouse_genomes_project 5 43030487 43031124 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015008.1 MGP_C3HHeJ_G0013112.1 mouse_genomes_project 5 147680789 147681327 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070970.1 MGP_C3HHeJ_G0029185.1 mouse_genomes_project 5 34488955 34876336 - MGP_C3HHeJ_P0070970 Sorcs2 protein_coding protein_coding MGP_C3HHeJ_T0070971.1 MGP_C3HHeJ_G0029185.1 mouse_genomes_project 5 34532644 34876319 - Sorcs2 protein_coding retained_intron MGP_C3HHeJ_T0070972.1 MGP_C3HHeJ_G0029185.1 mouse_genomes_project 5 34536940 34744527 - MGP_C3HHeJ_P0070972 Sorcs2 protein_coding protein_coding MGP_C3HHeJ_T0070973.1 MGP_C3HHeJ_G0029185.1 mouse_genomes_project 5 34625311 34876351 - MGP_C3HHeJ_P0070973 Sorcs2 protein_coding protein_coding MGP_C3HHeJ_T0070974.1 MGP_C3HHeJ_G0029185.1 mouse_genomes_project 5 34626341 34844165 - Sorcs2 protein_coding processed_transcript MGP_C3HHeJ_T0015030.1 MGP_C3HHeJ_G0013134.1 mouse_genomes_project 5 152534871 152535346 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001448.1 MGP_C3HHeJ_G0001377.1 mouse_genomes_project 5 26267322 26267687 - TEC TEC MGP_C3HHeJ_T0072455.1 MGP_C3HHeJ_G0029483.1 mouse_genomes_project 5 101325130 101410005 - MGP_C3HHeJ_P0072455 Tmem150c protein_coding protein_coding MGP_C3HHeJ_T0072456.1 MGP_C3HHeJ_G0029483.1 mouse_genomes_project 5 101331156 101409631 - Tmem150c protein_coding retained_intron MGP_C3HHeJ_T0072457.1 MGP_C3HHeJ_G0029483.1 mouse_genomes_project 5 101331157 101372910 - Tmem150c protein_coding retained_intron MGP_C3HHeJ_T0072458.1 MGP_C3HHeJ_G0029483.1 mouse_genomes_project 5 101333216 101409767 - Tmem150c protein_coding retained_intron MGP_C3HHeJ_T0072459.1 MGP_C3HHeJ_G0029483.1 mouse_genomes_project 5 101333337 101409480 - MGP_C3HHeJ_P0072459 Tmem150c protein_coding protein_coding MGP_C3HHeJ_T0004632.1 MGP_C3HHeJ_G0004003.1 mouse_genomes_project 5 66626598 66627149 - Gm15949 antisense antisense MGP_C3HHeJ_T0001433.1 MGP_C3HHeJ_G0001363.1 mouse_genomes_project 5 18373829 18374328 + TEC TEC MGP_C3HHeJ_T0098501.1 MGP_C3HHeJ_G0036706.1 mouse_genomes_project 5 117849351 117850036 + Gm13840 sense_intronic sense_intronic MGP_C3HHeJ_T0004729.1 MGP_C3HHeJ_G0004073.1 mouse_genomes_project 5 120403483 120407264 - Gm26995 antisense antisense MGP_C3HHeJ_T0001605.1 MGP_C3HHeJ_G0001530.1 mouse_genomes_project 5 65246920 65250933 - TEC TEC MGP_C3HHeJ_T0075411.1 MGP_C3HHeJ_G0030047.1 mouse_genomes_project 5 148778587 148790426 + MGP_C3HHeJ_P0075411 Nptx2 protein_coding protein_coding MGP_C3HHeJ_T0001603.1 MGP_C3HHeJ_G0001528.1 mouse_genomes_project 5 65188802 65191786 + TEC TEC MGP_C3HHeJ_T0001624.1 MGP_C3HHeJ_G0001549.1 mouse_genomes_project 5 66347802 66349371 + TEC TEC MGP_C3HHeJ_T0073284.1 MGP_C3HHeJ_G0029650.1 mouse_genomes_project 5 117294763 117388499 + MGP_C3HHeJ_P0073284 Sppl3 protein_coding protein_coding MGP_C3HHeJ_T0073285.1 MGP_C3HHeJ_G0029650.1 mouse_genomes_project 5 117294772 117348397 + Sppl3 protein_coding processed_transcript MGP_C3HHeJ_T0073286.1 MGP_C3HHeJ_G0029650.1 mouse_genomes_project 5 117295129 117373652 + MGP_C3HHeJ_P0073286 Sppl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073287.1 MGP_C3HHeJ_G0029650.1 mouse_genomes_project 5 117362327 117364833 + Sppl3 protein_coding retained_intron MGP_C3HHeJ_T0073288.1 MGP_C3HHeJ_G0029650.1 mouse_genomes_project 5 117384465 117387965 + Sppl3 protein_coding retained_intron MGP_C3HHeJ_T0072105.1 MGP_C3HHeJ_G0029391.1 mouse_genomes_project 5 88370987 88387266 + MGP_C3HHeJ_P0072105 Csn1s2b protein_coding protein_coding MGP_C3HHeJ_T0072106.1 MGP_C3HHeJ_G0029391.1 mouse_genomes_project 5 88371028 88387257 + MGP_C3HHeJ_P0072106 Csn1s2b protein_coding protein_coding MGP_C3HHeJ_T0072107.1 MGP_C3HHeJ_G0029391.1 mouse_genomes_project 5 88371029 88381329 + MGP_C3HHeJ_P0072107 Csn1s2b protein_coding protein_coding MGP_C3HHeJ_T0072108.1 MGP_C3HHeJ_G0029391.1 mouse_genomes_project 5 88371032 88387161 + MGP_C3HHeJ_P0072108 Csn1s2b protein_coding protein_coding MGP_C3HHeJ_T0072109.1 MGP_C3HHeJ_G0029391.1 mouse_genomes_project 5 88374270 88376333 + Csn1s2b protein_coding retained_intron MGP_C3HHeJ_T0004583.1 MGP_C3HHeJ_G0003964.1 mouse_genomes_project 5 29326416 29327998 - Gm15469 antisense antisense MGP_C3HHeJ_T0010656.1 MGP_C3HHeJ_G0008789.1 mouse_genomes_project 5 154028418 154028496 - miRNA miRNA MGP_C3HHeJ_T0099437.1 MGP_C3HHeJ_G0037631.1 mouse_genomes_project 5 49220411 49220518 - Gm22618 snRNA snRNA MGP_C3HHeJ_T0071185.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42604050 42715715 - MGP_C3HHeJ_P0071185 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071186.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42604052 42715442 - MGP_C3HHeJ_P0071186 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071187.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42604052 42712986 - MGP_C3HHeJ_P0071187 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071188.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42604052 42715793 - MGP_C3HHeJ_P0071188 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071189.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42604052 42615541 - MGP_C3HHeJ_P0071189 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071190.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42604055 42708529 - MGP_C3HHeJ_P0071190 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071191.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42604055 42708529 - MGP_C3HHeJ_P0071191 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071192.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42611786 42712953 - MGP_C3HHeJ_P0071192 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071193.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42611949 42708474 - MGP_C3HHeJ_P0071193 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071194.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42611949 42708474 - MGP_C3HHeJ_P0071194 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071195.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42611949 42708529 - MGP_C3HHeJ_P0071195 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071196.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42623364 42644342 - Prom1 protein_coding retained_intron MGP_C3HHeJ_T0071197.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42638116 42657699 - MGP_C3HHeJ_P0071197 Prom1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071198.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42641001 42656773 - Prom1 protein_coding retained_intron MGP_C3HHeJ_T0071199.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42656149 42715719 - Prom1 protein_coding retained_intron MGP_C3HHeJ_T0071200.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42659718 42680389 - Prom1 protein_coding processed_transcript MGP_C3HHeJ_T0071201.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42668200 42712947 - MGP_C3HHeJ_P0071201 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071202.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42713415 42715719 - Prom1 protein_coding processed_transcript MGP_C3HHeJ_T0073253.1 MGP_C3HHeJ_G0029642.1 mouse_genomes_project 5 117046790 117052566 - MGP_C3HHeJ_P0073253 1500011B03Rik protein_coding protein_coding MGP_C3HHeJ_T0014688.1 MGP_C3HHeJ_G0012792.1 mouse_genomes_project 5 11309206 11310170 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001503.1 MGP_C3HHeJ_G0001430.1 mouse_genomes_project 5 43218743 43218882 + TEC TEC MGP_C3HHeJ_T0001461.1 MGP_C3HHeJ_G0001389.1 mouse_genomes_project 5 30377670 30380571 - TEC TEC MGP_C3HHeJ_T0001462.1 MGP_C3HHeJ_G0001389.1 mouse_genomes_project 5 30377670 30380574 - TEC TEC MGP_C3HHeJ_T0014723.1 MGP_C3HHeJ_G0012827.1 mouse_genomes_project 5 21221544 21221668 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075500.1 MGP_C3HHeJ_G0030063.1 mouse_genomes_project 5 149618471 149691902 + MGP_C3HHeJ_P0075500 Cyp3a57 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075501.1 MGP_C3HHeJ_G0030063.1 mouse_genomes_project 5 149618479 149692316 + MGP_C3HHeJ_P0075501 Cyp3a57 protein_coding protein_coding MGP_C3HHeJ_T0100700.1 MGP_C3HHeJ_G0038894.1 mouse_genomes_project 5 60088686 60088809 - Gm23708 snoRNA snoRNA MGP_C3HHeJ_T0004702.1 MGP_C3HHeJ_G0004054.1 mouse_genomes_project 5 112749356 112757640 + Gm15559 antisense antisense MGP_C3HHeJ_T0070741.1 MGP_C3HHeJ_G0029152.1 mouse_genomes_project 5 32126983 32172882 - MGP_C3HHeJ_P0070741 Letm1 protein_coding protein_coding MGP_C3HHeJ_T0070742.1 MGP_C3HHeJ_G0029152.1 mouse_genomes_project 5 32129844 32141614 - Letm1 protein_coding retained_intron MGP_C3HHeJ_T0070743.1 MGP_C3HHeJ_G0029152.1 mouse_genomes_project 5 32151777 32168713 - MGP_C3HHeJ_P0070743 Letm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070744.1 MGP_C3HHeJ_G0029152.1 mouse_genomes_project 5 32159427 32172779 - Letm1 protein_coding processed_transcript MGP_C3HHeJ_T0070745.1 MGP_C3HHeJ_G0029152.1 mouse_genomes_project 5 32159626 32160519 - Letm1 protein_coding processed_transcript MGP_C3HHeJ_T0070746.1 MGP_C3HHeJ_G0029152.1 mouse_genomes_project 5 32166523 32172802 - MGP_C3HHeJ_P0070746 Letm1 protein_coding protein_coding MGP_C3HHeJ_T0010585.1 MGP_C3HHeJ_G0008718.1 mouse_genomes_project 5 28810334 28810414 + Mir5625 miRNA miRNA MGP_C3HHeJ_T0070285.1 MGP_C3HHeJ_G0029082.1 mouse_genomes_project 5 28278037 28317534 - MGP_C3HHeJ_P0070285 Hadha protein_coding protein_coding MGP_C3HHeJ_T0070286.1 MGP_C3HHeJ_G0029082.1 mouse_genomes_project 5 28279159 28317348 - Hadha protein_coding processed_transcript MGP_C3HHeJ_T0070287.1 MGP_C3HHeJ_G0029082.1 mouse_genomes_project 5 28279632 28280039 - Hadha protein_coding processed_transcript MGP_C3HHeJ_T0070288.1 MGP_C3HHeJ_G0029082.1 mouse_genomes_project 5 28281202 28287609 - Hadha protein_coding retained_intron MGP_C3HHeJ_T0070289.1 MGP_C3HHeJ_G0029082.1 mouse_genomes_project 5 28287225 28296429 - MGP_C3HHeJ_P0070289 Hadha protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070290.1 MGP_C3HHeJ_G0029082.1 mouse_genomes_project 5 28289204 28302414 - Hadha protein_coding retained_intron MGP_C3HHeJ_T0070291.1 MGP_C3HHeJ_G0029082.1 mouse_genomes_project 5 28294621 28317334 - Hadha protein_coding retained_intron MGP_C3HHeJ_T0070292.1 MGP_C3HHeJ_G0029082.1 mouse_genomes_project 5 28308470 28310930 - Hadha protein_coding retained_intron MGP_C3HHeJ_T0070293.1 MGP_C3HHeJ_G0029082.1 mouse_genomes_project 5 28316293 28317362 - Hadha protein_coding retained_intron MGP_C3HHeJ_T0014670.1 MGP_C3HHeJ_G0012774.1 mouse_genomes_project 5 3834783 3835349 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070306.1 MGP_C3HHeJ_G0029085.1 mouse_genomes_project 5 28416439 28456268 + MGP_C3HHeJ_P0070306 protein_coding protein_coding MGP_C3HHeJ_T0070307.1 MGP_C3HHeJ_G0029085.1 mouse_genomes_project 5 28416493 28418532 + protein_coding retained_intron MGP_C3HHeJ_T0070308.1 MGP_C3HHeJ_G0029085.1 mouse_genomes_project 5 28416498 28434923 + protein_coding retained_intron MGP_C3HHeJ_T0070309.1 MGP_C3HHeJ_G0029085.1 mouse_genomes_project 5 28416505 28442388 + protein_coding retained_intron MGP_C3HHeJ_T0070310.1 MGP_C3HHeJ_G0029085.1 mouse_genomes_project 5 28416508 28441627 + MGP_C3HHeJ_P0070310 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070311.1 MGP_C3HHeJ_G0029085.1 mouse_genomes_project 5 28416532 28452814 + MGP_C3HHeJ_P0070311 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070312.1 MGP_C3HHeJ_G0029085.1 mouse_genomes_project 5 28446914 28450834 + protein_coding retained_intron MGP_C3HHeJ_T0070313.1 MGP_C3HHeJ_G0029085.1 mouse_genomes_project 5 28447394 28451088 + protein_coding processed_transcript MGP_C3HHeJ_T0010592.1 MGP_C3HHeJ_G0008725.1 mouse_genomes_project 5 40514149 40514231 + Mir6414 miRNA miRNA MGP_C3HHeJ_T0001475.1 MGP_C3HHeJ_G0001402.1 mouse_genomes_project 5 33850109 33850564 + TEC TEC MGP_C3HHeJ_T0014759.1 MGP_C3HHeJ_G0012863.1 mouse_genomes_project 5 31481842 31482302 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001492.1 MGP_C3HHeJ_G0001419.1 mouse_genomes_project 5 42377387 42380486 + TEC TEC MGP_C3HHeJ_T0004767.1 MGP_C3HHeJ_G0004098.1 mouse_genomes_project 5 128103924 128107443 + Gm42839 antisense antisense MGP_C3HHeJ_T0100691.1 MGP_C3HHeJ_G0038885.1 mouse_genomes_project 5 20119051 20119165 - Gm25459 snoRNA snoRNA MGP_C3HHeJ_T0015005.1 MGP_C3HHeJ_G0013109.1 mouse_genomes_project 5 147030334 147030918 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008034.1 MGP_C3HHeJ_G0006541.1 mouse_genomes_project 5 41640700 41645025 - Gm42711 lincRNA lincRNA MGP_C3HHeJ_T0001536.1 MGP_C3HHeJ_G0001462.1 mouse_genomes_project 5 47927735 47929067 - TEC TEC MGP_C3HHeJ_T0004568.1 MGP_C3HHeJ_G0003952.1 mouse_genomes_project 5 19660365 19706535 + Gm10475 antisense antisense MGP_C3HHeJ_T0070198.1 MGP_C3HHeJ_G0029062.1 mouse_genomes_project 5 24302684 24304593 + MGP_C3HHeJ_P0070198 protein_coding protein_coding MGP_C3HHeJ_T0073492.1 MGP_C3HHeJ_G0029688.1 mouse_genomes_project 5 120543386 120640281 - MGP_C3HHeJ_P0073492 Fbxw8 protein_coding protein_coding MGP_C3HHeJ_T0073493.1 MGP_C3HHeJ_G0029688.1 mouse_genomes_project 5 120555476 120640243 - Fbxw8 protein_coding retained_intron MGP_C3HHeJ_T0071078.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36696062 36712507 - Zbtb49 protein_coding processed_transcript MGP_C3HHeJ_T0071079.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36706403 36726776 - MGP_C3HHeJ_P0071079 Zbtb49 protein_coding protein_coding MGP_C3HHeJ_T0071080.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36706568 36726732 - MGP_C3HHeJ_P0071080 Zbtb49 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071081.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36706571 36726744 - MGP_C3HHeJ_P0071081 Zbtb49 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071082.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36706956 36726744 - MGP_C3HHeJ_P0071082 Zbtb49 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071083.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36706956 36726746 - MGP_C3HHeJ_P0071083 Zbtb49 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071084.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36709569 36710119 - MGP_C3HHeJ_P0071084 Zbtb49 protein_coding protein_coding MGP_C3HHeJ_T0071085.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36710070 36719871 - MGP_C3HHeJ_P0071085 Zbtb49 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071086.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36710126 36726750 - MGP_C3HHeJ_P0071086 Zbtb49 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071087.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36718356 36726773 - MGP_C3HHeJ_P0071087 Zbtb49 protein_coding protein_coding MGP_C3HHeJ_T0071088.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36721697 36726743 - Zbtb49 protein_coding retained_intron MGP_C3HHeJ_T0070589.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29844093 29902867 + Mrpl33 protein_coding processed_transcript MGP_C3HHeJ_T0070590.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29845904 29870012 + Mrpl33 protein_coding processed_transcript MGP_C3HHeJ_T0070591.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29860909 29870012 + MGP_C3HHeJ_P0070591 Mrpl33 protein_coding protein_coding MGP_C3HHeJ_T0070592.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29860926 29889762 + Mrpl33 protein_coding processed_transcript MGP_C3HHeJ_T0070593.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29860942 29902867 + Mrpl33 protein_coding processed_transcript MGP_C3HHeJ_T0070594.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29860955 29913236 + MGP_C3HHeJ_P0070594 Mrpl33 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070595.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29860983 29870010 + Mrpl33 protein_coding retained_intron MGP_C3HHeJ_T0070596.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29860987 29870005 + Mrpl33 protein_coding processed_transcript MGP_C3HHeJ_T0070597.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29861122 29869940 + Mrpl33 protein_coding retained_intron MGP_C3HHeJ_T0070600.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29902630 29906136 + Mrpl33 protein_coding processed_transcript MGP_C3HHeJ_T0070601.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29903501 29912283 + Mrpl33 protein_coding processed_transcript MGP_C3HHeJ_T0014816.1 MGP_C3HHeJ_G0012920.1 mouse_genomes_project 5 59938227 59938649 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001436.1 MGP_C3HHeJ_G0001366.1 mouse_genomes_project 5 19708615 19710512 - TEC TEC MGP_C3HHeJ_T0008258.1 MGP_C3HHeJ_G0006707.1 mouse_genomes_project 5 122382314 122384869 - 1700021F13Rik lincRNA lincRNA MGP_C3HHeJ_T0008259.1 MGP_C3HHeJ_G0006707.1 mouse_genomes_project 5 122382318 122384667 - 1700021F13Rik lincRNA lincRNA MGP_C3HHeJ_T0001639.1 MGP_C3HHeJ_G0001564.1 mouse_genomes_project 5 68934304 68937162 - TEC TEC MGP_C3HHeJ_T0075390.1 MGP_C3HHeJ_G0030041.1 mouse_genomes_project 5 148219599 148226395 - MGP_C3HHeJ_P0075390 Ocm protein_coding protein_coding MGP_C3HHeJ_T0075391.1 MGP_C3HHeJ_G0030041.1 mouse_genomes_project 5 148219871 148225502 - MGP_C3HHeJ_P0075391 Ocm protein_coding protein_coding MGP_C3HHeJ_T0075392.1 MGP_C3HHeJ_G0030041.1 mouse_genomes_project 5 148224235 148226466 - MGP_C3HHeJ_P0075392 Ocm protein_coding protein_coding MGP_C3HHeJ_T0014932.1 MGP_C3HHeJ_G0013036.1 mouse_genomes_project 5 110795336 110798435 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099445.1 MGP_C3HHeJ_G0037639.1 mouse_genomes_project 5 69924558 69924620 - Gm23067 snRNA snRNA MGP_C3HHeJ_T0008242.1 MGP_C3HHeJ_G0006693.1 mouse_genomes_project 5 119039868 119243036 - Gm43122 lincRNA lincRNA MGP_C3HHeJ_T0008244.1 MGP_C3HHeJ_G0006693.1 mouse_genomes_project 5 119230753 119243070 - Gm43122 lincRNA lincRNA MGP_C3HHeJ_T0073337.1 MGP_C3HHeJ_G0029663.1 mouse_genomes_project 5 117651305 117655023 - MGP_C3HHeJ_P0073337 Cox6a1 protein_coding protein_coding MGP_C3HHeJ_T0073338.1 MGP_C3HHeJ_G0029663.1 mouse_genomes_project 5 117651320 117654956 - Cox6a1 protein_coding retained_intron MGP_C3HHeJ_T0001581.1 MGP_C3HHeJ_G0001507.1 mouse_genomes_project 5 57331148 57332890 + TEC TEC MGP_C3HHeJ_T0014888.1 MGP_C3HHeJ_G0012992.1 mouse_genomes_project 5 92569921 92570416 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014899.1 MGP_C3HHeJ_G0013003.1 mouse_genomes_project 5 100820407 100821216 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001731.1 MGP_C3HHeJ_G0001655.1 mouse_genomes_project 5 115229821 115230202 + TEC TEC MGP_C3HHeJ_T0072039.1 MGP_C3HHeJ_G0029373.1 mouse_genomes_project 5 87222410 87265626 - MGP_C3HHeJ_P0072039 Tmprss11e protein_coding protein_coding MGP_C3HHeJ_T0001651.1 MGP_C3HHeJ_G0001575.1 mouse_genomes_project 5 73120170 73122645 - TEC TEC MGP_C3HHeJ_T0099419.1 MGP_C3HHeJ_G0037613.1 mouse_genomes_project 5 17133544 17133647 - Gm25335 snRNA snRNA MGP_C3HHeJ_T0075554.1 MGP_C3HHeJ_G0030080.1 mouse_genomes_project 5 151696943 151698978 + MGP_C3HHeJ_P0075554 Polr1d protein_coding protein_coding MGP_C3HHeJ_T0075555.1 MGP_C3HHeJ_G0030080.1 mouse_genomes_project 5 151697240 151731383 + MGP_C3HHeJ_P0075555 Polr1d protein_coding protein_coding MGP_C3HHeJ_T0075556.1 MGP_C3HHeJ_G0030080.1 mouse_genomes_project 5 151697442 151731619 + MGP_C3HHeJ_P0075556 Polr1d protein_coding protein_coding MGP_C3HHeJ_T0075557.1 MGP_C3HHeJ_G0030080.1 mouse_genomes_project 5 151697458 151731596 + MGP_C3HHeJ_P0075557 Polr1d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075558.1 MGP_C3HHeJ_G0030080.1 mouse_genomes_project 5 151721171 151730892 + Polr1d protein_coding retained_intron MGP_C3HHeJ_T0075559.1 MGP_C3HHeJ_G0030080.1 mouse_genomes_project 5 151725390 151731008 + Polr1d protein_coding processed_transcript MGP_C3HHeJ_T0007973.1 MGP_C3HHeJ_G0006503.1 mouse_genomes_project 5 21165089 21189158 - lincRNA lincRNA MGP_C3HHeJ_T0070565.1 MGP_C3HHeJ_G0029125.1 mouse_genomes_project 5 29727650 29756697 + MGP_C3HHeJ_P0070565 Gpn1 protein_coding protein_coding MGP_C3HHeJ_T0070566.1 MGP_C3HHeJ_G0029125.1 mouse_genomes_project 5 29727661 29737984 + Gpn1 protein_coding retained_intron MGP_C3HHeJ_T0070567.1 MGP_C3HHeJ_G0029125.1 mouse_genomes_project 5 29727662 29730626 + MGP_C3HHeJ_P0070567 Gpn1 protein_coding protein_coding MGP_C3HHeJ_T0070568.1 MGP_C3HHeJ_G0029125.1 mouse_genomes_project 5 29727676 29732243 + MGP_C3HHeJ_P0070568 Gpn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070569.1 MGP_C3HHeJ_G0029125.1 mouse_genomes_project 5 29727703 29738490 + Gpn1 protein_coding retained_intron MGP_C3HHeJ_T0070570.1 MGP_C3HHeJ_G0029125.1 mouse_genomes_project 5 29727910 29730234 + Gpn1 protein_coding processed_transcript MGP_C3HHeJ_T0070571.1 MGP_C3HHeJ_G0029125.1 mouse_genomes_project 5 29750844 29754643 + Gpn1 protein_coding retained_intron MGP_C3HHeJ_T0072899.1 MGP_C3HHeJ_G0029577.1 mouse_genomes_project 5 112130404 112180555 + MGP_C3HHeJ_P0072899 Golga3 protein_coding protein_coding MGP_C3HHeJ_T0072900.1 MGP_C3HHeJ_G0029577.1 mouse_genomes_project 5 112130560 112141597 + Golga3 protein_coding retained_intron MGP_C3HHeJ_T0072901.1 MGP_C3HHeJ_G0029577.1 mouse_genomes_project 5 112130582 112139664 + MGP_C3HHeJ_P0072901 Golga3 protein_coding protein_coding MGP_C3HHeJ_T0072902.1 MGP_C3HHeJ_G0029577.1 mouse_genomes_project 5 112130582 112177270 + MGP_C3HHeJ_P0072902 Golga3 protein_coding protein_coding MGP_C3HHeJ_T0072903.1 MGP_C3HHeJ_G0029577.1 mouse_genomes_project 5 112130600 112143510 + Golga3 protein_coding retained_intron MGP_C3HHeJ_T0072211.1 MGP_C3HHeJ_G0029425.1 mouse_genomes_project 5 91505069 91507190 + Cxcl5 protein_coding retained_intron MGP_C3HHeJ_T0072212.1 MGP_C3HHeJ_G0029425.1 mouse_genomes_project 5 91505087 91507190 + MGP_C3HHeJ_P0072212 Cxcl5 protein_coding protein_coding MGP_C3HHeJ_T0014803.1 MGP_C3HHeJ_G0012907.1 mouse_genomes_project 5 55335150 55335463 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071719.1 MGP_C3HHeJ_G0029317.1 mouse_genomes_project 5 72546383 72594490 - MGP_C3HHeJ_P0071719 Txk protein_coding protein_coding MGP_C3HHeJ_T0071720.1 MGP_C3HHeJ_G0029317.1 mouse_genomes_project 5 72546383 72609955 - MGP_C3HHeJ_P0071720 Txk protein_coding protein_coding MGP_C3HHeJ_T0071721.1 MGP_C3HHeJ_G0029317.1 mouse_genomes_project 5 72546383 72609959 - MGP_C3HHeJ_P0071721 Txk protein_coding protein_coding MGP_C3HHeJ_T0071722.1 MGP_C3HHeJ_G0029317.1 mouse_genomes_project 5 72546385 72609955 - MGP_C3HHeJ_P0071722 Txk protein_coding protein_coding MGP_C3HHeJ_T0071723.1 MGP_C3HHeJ_G0029317.1 mouse_genomes_project 5 72546391 72593794 - Txk protein_coding processed_transcript MGP_C3HHeJ_T0071724.1 MGP_C3HHeJ_G0029317.1 mouse_genomes_project 5 72546391 72593794 - Txk protein_coding processed_transcript MGP_C3HHeJ_T0071725.1 MGP_C3HHeJ_G0029317.1 mouse_genomes_project 5 72553585 72609956 - Txk protein_coding retained_intron MGP_C3HHeJ_T0071726.1 MGP_C3HHeJ_G0029317.1 mouse_genomes_project 5 72605737 72609952 - Txk protein_coding retained_intron MGP_C3HHeJ_T0072733.1 MGP_C3HHeJ_G0029542.1 mouse_genomes_project 5 109405332 109414456 - MGP_C3HHeJ_P0072733 Gfi1 protein_coding protein_coding MGP_C3HHeJ_T0072734.1 MGP_C3HHeJ_G0029542.1 mouse_genomes_project 5 109405332 109412992 - MGP_C3HHeJ_P0072734 Gfi1 protein_coding protein_coding MGP_C3HHeJ_T0072735.1 MGP_C3HHeJ_G0029542.1 mouse_genomes_project 5 109405341 109414456 - MGP_C3HHeJ_P0072735 Gfi1 protein_coding protein_coding MGP_C3HHeJ_T0072736.1 MGP_C3HHeJ_G0029542.1 mouse_genomes_project 5 109405899 109412610 - MGP_C3HHeJ_P0072736 Gfi1 protein_coding protein_coding MGP_C3HHeJ_T0072737.1 MGP_C3HHeJ_G0029542.1 mouse_genomes_project 5 109410249 109414687 - MGP_C3HHeJ_P0072737 Gfi1 protein_coding protein_coding MGP_C3HHeJ_T0008049.1 MGP_C3HHeJ_G0006555.1 mouse_genomes_project 5 51214999 51232169 - C130083M11Rik lincRNA lincRNA MGP_C3HHeJ_T0001730.1 MGP_C3HHeJ_G0001654.1 mouse_genomes_project 5 115204123 115206015 - TEC TEC MGP_C3HHeJ_T0004595.1 MGP_C3HHeJ_G0003975.1 mouse_genomes_project 5 34037244 34045351 - 4931431C16Rik antisense antisense MGP_C3HHeJ_T0070869.1 MGP_C3HHeJ_G0029169.1 mouse_genomes_project 5 33082642 33180632 + MGP_C3HHeJ_P0070869 Grk4 protein_coding protein_coding MGP_C3HHeJ_T0070870.1 MGP_C3HHeJ_G0029169.1 mouse_genomes_project 5 33083238 33098895 + MGP_C3HHeJ_P0070870 Grk4 protein_coding protein_coding MGP_C3HHeJ_T0070871.1 MGP_C3HHeJ_G0029169.1 mouse_genomes_project 5 33139472 33169561 + Grk4 protein_coding processed_transcript MGP_C3HHeJ_T0070872.1 MGP_C3HHeJ_G0029169.1 mouse_genomes_project 5 33168666 33180634 + Grk4 protein_coding processed_transcript MGP_C3HHeJ_T0072137.1 MGP_C3HHeJ_G0029408.1 mouse_genomes_project 5 89203309 89204938 + MGP_C3HHeJ_P0072137 Utp3 protein_coding protein_coding MGP_C3HHeJ_T0071089.1 MGP_C3HHeJ_G0029208.1 mouse_genomes_project 5 36726800 36737063 + MGP_C3HHeJ_P0071089 Lyar protein_coding protein_coding MGP_C3HHeJ_T0071090.1 MGP_C3HHeJ_G0029208.1 mouse_genomes_project 5 36726838 36734275 + MGP_C3HHeJ_P0071090 Lyar protein_coding protein_coding MGP_C3HHeJ_T0071091.1 MGP_C3HHeJ_G0029208.1 mouse_genomes_project 5 36726845 36737064 + MGP_C3HHeJ_P0071091 Lyar protein_coding protein_coding MGP_C3HHeJ_T0071092.1 MGP_C3HHeJ_G0029208.1 mouse_genomes_project 5 36726847 36737348 + MGP_C3HHeJ_P0071092 Lyar protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071093.1 MGP_C3HHeJ_G0029208.1 mouse_genomes_project 5 36726868 36732273 + MGP_C3HHeJ_P0071093 Lyar protein_coding protein_coding MGP_C3HHeJ_T0071094.1 MGP_C3HHeJ_G0029208.1 mouse_genomes_project 5 36726872 36734459 + MGP_C3HHeJ_P0071094 Lyar protein_coding protein_coding MGP_C3HHeJ_T0071095.1 MGP_C3HHeJ_G0029208.1 mouse_genomes_project 5 36726912 36740665 + MGP_C3HHeJ_P0071095 Lyar protein_coding protein_coding MGP_C3HHeJ_T0071096.1 MGP_C3HHeJ_G0029208.1 mouse_genomes_project 5 36729323 36737043 + MGP_C3HHeJ_P0071096 Lyar protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071097.1 MGP_C3HHeJ_G0029208.1 mouse_genomes_project 5 36731007 36732820 + Lyar protein_coding retained_intron MGP_C3HHeJ_T0071211.1 MGP_C3HHeJ_G0029230.1 mouse_genomes_project 5 43097689 43448240 - MGP_C3HHeJ_P0071211 Ldb2 protein_coding protein_coding MGP_C3HHeJ_T0071212.1 MGP_C3HHeJ_G0029230.1 mouse_genomes_project 5 43097689 43448281 - MGP_C3HHeJ_P0071212 Ldb2 protein_coding protein_coding MGP_C3HHeJ_T0071213.1 MGP_C3HHeJ_G0029230.1 mouse_genomes_project 5 43097689 43448220 - MGP_C3HHeJ_P0071213 Ldb2 protein_coding protein_coding MGP_C3HHeJ_T0071214.1 MGP_C3HHeJ_G0029230.1 mouse_genomes_project 5 43097697 43448203 - MGP_C3HHeJ_P0071214 Ldb2 protein_coding protein_coding MGP_C3HHeJ_T0071215.1 MGP_C3HHeJ_G0029230.1 mouse_genomes_project 5 43105349 43229277 - Ldb2 protein_coding processed_transcript MGP_C3HHeJ_T0071216.1 MGP_C3HHeJ_G0029230.1 mouse_genomes_project 5 43159025 43167925 - Ldb2 protein_coding processed_transcript MGP_C3HHeJ_T0071217.1 MGP_C3HHeJ_G0029230.1 mouse_genomes_project 5 43174499 43448253 - Ldb2 protein_coding retained_intron MGP_C3HHeJ_T0014665.1 MGP_C3HHeJ_G0012769.1 mouse_genomes_project 5 899207 900916 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014726.1 MGP_C3HHeJ_G0012830.1 mouse_genomes_project 5 22024185 22024670 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008367.1 MGP_C3HHeJ_G0006782.1 mouse_genomes_project 5 153698042 153699458 + 8430423G03Rik lincRNA lincRNA MGP_C3HHeJ_T0004811.1 MGP_C3HHeJ_G0004129.1 mouse_genomes_project 5 147610593 147623633 - Gm20635 antisense antisense MGP_C3HHeJ_T0075756.1 MGP_C3HHeJ_G0030113.1 mouse_genomes_project 5 156458944 156481240 - MGP_C3HHeJ_P0075756 Vmn2r18 protein_coding protein_coding MGP_C3HHeJ_T0102052.1 MGP_C3HHeJ_G0040017.1 mouse_genomes_project 5 128916536 128917201 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101213.1 MGP_C3HHeJ_G0039348.1 mouse_genomes_project 5 21730234 21731953 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0102036.1 MGP_C3HHeJ_G0040001.1 mouse_genomes_project 5 87504356 87519262 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011492.1 MGP_C3HHeJ_G0009625.1 mouse_genomes_project 5 6159100 6159242 - Gm27941 misc_RNA misc_RNA MGP_C3HHeJ_T0008221.1 MGP_C3HHeJ_G0006678.1 mouse_genomes_project 5 114714809 114717560 + Gm42864 lincRNA lincRNA MGP_C3HHeJ_T0072122.1 MGP_C3HHeJ_G0029397.1 mouse_genomes_project 5 88546283 88548389 + MGP_C3HHeJ_P0072122 Cabs1 protein_coding protein_coding MGP_C3HHeJ_T0070797.1 MGP_C3HHeJ_G0029161.1 mouse_genomes_project 5 32701990 32737125 + MGP_C3HHeJ_P0070797 unknown_likely_coding unknown_likely_coding MGP_C3HHeJ_T0010634.1 MGP_C3HHeJ_G0008767.1 mouse_genomes_project 5 137946407 137946446 + Mir7228 miRNA miRNA MGP_C3HHeJ_T0004791.1 MGP_C3HHeJ_G0004117.1 mouse_genomes_project 5 141164206 141173741 + Gm17112 antisense antisense MGP_C3HHeJ_T0075471.1 MGP_C3HHeJ_G0030057.1 mouse_genomes_project 5 149428261 149444035 + MGP_C3HHeJ_P0075471 Cpsf4 protein_coding protein_coding MGP_C3HHeJ_T0075472.1 MGP_C3HHeJ_G0030057.1 mouse_genomes_project 5 149428272 149444035 + MGP_C3HHeJ_P0075472 Cpsf4 protein_coding protein_coding MGP_C3HHeJ_T0075473.1 MGP_C3HHeJ_G0030057.1 mouse_genomes_project 5 149428295 149444034 + MGP_C3HHeJ_P0075473 Cpsf4 protein_coding protein_coding MGP_C3HHeJ_T0075474.1 MGP_C3HHeJ_G0030057.1 mouse_genomes_project 5 149428302 149443747 + MGP_C3HHeJ_P0075474 Cpsf4 protein_coding protein_coding MGP_C3HHeJ_T0075475.1 MGP_C3HHeJ_G0030057.1 mouse_genomes_project 5 149428319 149443226 + MGP_C3HHeJ_P0075475 Cpsf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075476.1 MGP_C3HHeJ_G0030057.1 mouse_genomes_project 5 149428506 149443347 + MGP_C3HHeJ_P0075476 Cpsf4 protein_coding protein_coding MGP_C3HHeJ_T0075477.1 MGP_C3HHeJ_G0030057.1 mouse_genomes_project 5 149432588 149444035 + Cpsf4 protein_coding retained_intron MGP_C3HHeJ_T0014789.1 MGP_C3HHeJ_G0012893.1 mouse_genomes_project 5 48354523 48354836 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008321.1 MGP_C3HHeJ_G0006742.1 mouse_genomes_project 5 135812961 135814122 + Gm28616 lincRNA lincRNA MGP_C3HHeJ_T0100733.1 MGP_C3HHeJ_G0038927.1 mouse_genomes_project 5 151416166 151416295 + Gm23202 snoRNA snoRNA MGP_C3HHeJ_T0071859.1 MGP_C3HHeJ_G0029339.1 mouse_genomes_project 5 75965055 76011465 - MGP_C3HHeJ_P0071859 Kdr protein_coding protein_coding MGP_C3HHeJ_T0071860.1 MGP_C3HHeJ_G0029339.1 mouse_genomes_project 5 75990392 76011465 - Kdr protein_coding retained_intron MGP_C3HHeJ_T0071861.1 MGP_C3HHeJ_G0029339.1 mouse_genomes_project 5 75994271 76011465 - Kdr protein_coding retained_intron MGP_C3HHeJ_T0001742.1 MGP_C3HHeJ_G0001666.1 mouse_genomes_project 5 118229958 118232242 + TEC TEC MGP_C3HHeJ_T0072164.1 MGP_C3HHeJ_G0029414.1 mouse_genomes_project 5 90077261 90116223 - MGP_C3HHeJ_P0072164 Gc protein_coding protein_coding MGP_C3HHeJ_T0072165.1 MGP_C3HHeJ_G0029414.1 mouse_genomes_project 5 90082556 90089344 - MGP_C3HHeJ_P0072165 Gc protein_coding protein_coding MGP_C3HHeJ_T0014695.1 MGP_C3HHeJ_G0012799.1 mouse_genomes_project 5 15926462 15926922 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008241.1 MGP_C3HHeJ_G0006692.1 mouse_genomes_project 5 118776932 118779055 - 4930562A09Rik lincRNA lincRNA MGP_C3HHeJ_T0010581.1 MGP_C3HHeJ_G0008714.1 mouse_genomes_project 5 21086302 21086348 - Gm28022 miRNA miRNA MGP_C3HHeJ_T0073728.1 MGP_C3HHeJ_G0029735.1 mouse_genomes_project 5 124996547 125036870 - MGP_C3HHeJ_P0073728 Ccdc63 protein_coding protein_coding MGP_C3HHeJ_T0073729.1 MGP_C3HHeJ_G0029735.1 mouse_genomes_project 5 124996577 125001288 - Ccdc63 protein_coding retained_intron MGP_C3HHeJ_T0073730.1 MGP_C3HHeJ_G0029735.1 mouse_genomes_project 5 124996592 125033623 - MGP_C3HHeJ_P0073730 Ccdc63 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073731.1 MGP_C3HHeJ_G0029735.1 mouse_genomes_project 5 125021885 125030108 - MGP_C3HHeJ_P0073731 Ccdc63 protein_coding protein_coding MGP_C3HHeJ_T0073732.1 MGP_C3HHeJ_G0029735.1 mouse_genomes_project 5 125028002 125030108 - MGP_C3HHeJ_P0073732 Ccdc63 protein_coding protein_coding MGP_C3HHeJ_T0073733.1 MGP_C3HHeJ_G0029735.1 mouse_genomes_project 5 125033243 125037765 - Ccdc63 protein_coding retained_intron MGP_C3HHeJ_T0073734.1 MGP_C3HHeJ_G0029735.1 mouse_genomes_project 5 125034926 125040385 - Ccdc63 protein_coding retained_intron MGP_C3HHeJ_T0070208.1 MGP_C3HHeJ_G0029064.1 mouse_genomes_project 5 25830314 25885233 - MGP_C3HHeJ_P0070208 Paxip1 protein_coding protein_coding MGP_C3HHeJ_T0070209.1 MGP_C3HHeJ_G0029064.1 mouse_genomes_project 5 25834309 25844513 - Paxip1 protein_coding retained_intron MGP_C3HHeJ_T0070210.1 MGP_C3HHeJ_G0029064.1 mouse_genomes_project 5 25853347 25859349 - Paxip1 protein_coding retained_intron MGP_C3HHeJ_T0070211.1 MGP_C3HHeJ_G0029064.1 mouse_genomes_project 5 25866089 25885078 - MGP_C3HHeJ_P0070211 Paxip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070212.1 MGP_C3HHeJ_G0029064.1 mouse_genomes_project 5 25875094 25885374 - Paxip1 protein_coding processed_transcript MGP_C3HHeJ_T0070213.1 MGP_C3HHeJ_G0029064.1 mouse_genomes_project 5 25877225 25885066 - Paxip1 protein_coding retained_intron MGP_C3HHeJ_T0070214.1 MGP_C3HHeJ_G0029064.1 mouse_genomes_project 5 25880191 25884047 - Paxip1 protein_coding retained_intron MGP_C3HHeJ_T0071495.1 MGP_C3HHeJ_G0029281.1 mouse_genomes_project 5 65093615 65157984 + MGP_C3HHeJ_P0071495 Ube2k protein_coding protein_coding MGP_C3HHeJ_T0071496.1 MGP_C3HHeJ_G0029281.1 mouse_genomes_project 5 65093637 65161166 + MGP_C3HHeJ_P0071496 Ube2k protein_coding protein_coding MGP_C3HHeJ_T0071497.1 MGP_C3HHeJ_G0029281.1 mouse_genomes_project 5 65093645 65157984 + MGP_C3HHeJ_P0071497 Ube2k protein_coding protein_coding MGP_C3HHeJ_T0071498.1 MGP_C3HHeJ_G0029281.1 mouse_genomes_project 5 65093688 65157374 + MGP_C3HHeJ_P0071498 Ube2k protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071499.1 MGP_C3HHeJ_G0029281.1 mouse_genomes_project 5 65093838 65158257 + MGP_C3HHeJ_P0071499 Ube2k protein_coding protein_coding MGP_C3HHeJ_T0071500.1 MGP_C3HHeJ_G0029281.1 mouse_genomes_project 5 65131055 65133722 + Ube2k protein_coding retained_intron MGP_C3HHeJ_T0071501.1 MGP_C3HHeJ_G0029281.1 mouse_genomes_project 5 65153824 65157374 + Ube2k protein_coding retained_intron MGP_C3HHeJ_T0075162.1 MGP_C3HHeJ_G0029990.1 mouse_genomes_project 5 143793039 143796326 - MGP_C3HHeJ_P0075162 Psmg3 protein_coding protein_coding MGP_C3HHeJ_T0075163.1 MGP_C3HHeJ_G0029990.1 mouse_genomes_project 5 143793060 143796284 - MGP_C3HHeJ_P0075163 Psmg3 protein_coding protein_coding MGP_C3HHeJ_T0075164.1 MGP_C3HHeJ_G0029990.1 mouse_genomes_project 5 143793915 143796316 - Psmg3 protein_coding retained_intron MGP_C3HHeJ_T0008046.1 MGP_C3HHeJ_G0006552.1 mouse_genomes_project 5 49083441 49088085 + 4930448I18Rik lincRNA lincRNA MGP_C3HHeJ_T0001665.1 MGP_C3HHeJ_G0001589.1 mouse_genomes_project 5 75161500 75161930 - TEC TEC MGP_C3HHeJ_T0014909.1 MGP_C3HHeJ_G0013013.1 mouse_genomes_project 5 104620315 104620903 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072648.1 MGP_C3HHeJ_G0029526.1 mouse_genomes_project 5 107474947 107513126 + MGP_C3HHeJ_P0072648 Zfp326 protein_coding protein_coding MGP_C3HHeJ_T0072649.1 MGP_C3HHeJ_G0029526.1 mouse_genomes_project 5 107474950 107514164 + Zfp326 protein_coding retained_intron MGP_C3HHeJ_T0072650.1 MGP_C3HHeJ_G0029526.1 mouse_genomes_project 5 107474950 107486404 + Zfp326 protein_coding retained_intron MGP_C3HHeJ_T0072651.1 MGP_C3HHeJ_G0029526.1 mouse_genomes_project 5 107474950 107514164 + MGP_C3HHeJ_P0072651 Zfp326 protein_coding protein_coding MGP_C3HHeJ_T0072652.1 MGP_C3HHeJ_G0029526.1 mouse_genomes_project 5 107474958 107513523 + MGP_C3HHeJ_P0072652 Zfp326 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072653.1 MGP_C3HHeJ_G0029526.1 mouse_genomes_project 5 107475323 107484567 + Zfp326 protein_coding processed_transcript MGP_C3HHeJ_T0072654.1 MGP_C3HHeJ_G0029526.1 mouse_genomes_project 5 107477152 107505912 + Zfp326 protein_coding retained_intron MGP_C3HHeJ_T0072655.1 MGP_C3HHeJ_G0029526.1 mouse_genomes_project 5 107489324 107494838 + Zfp326 protein_coding retained_intron MGP_C3HHeJ_T0072656.1 MGP_C3HHeJ_G0029526.1 mouse_genomes_project 5 107503250 107506325 + Zfp326 protein_coding retained_intron MGP_C3HHeJ_T0072658.1 MGP_C3HHeJ_G0029528.1 mouse_genomes_project 5 108259725 108259829 + MGP_C3HHeJ_P0072658 Gm17304 protein_coding protein_coding MGP_C3HHeJ_T0069631.1 MGP_C3HHeJ_G0028962.1 mouse_genomes_project 5 496867 505504 - MGP_C3HHeJ_P0069631 Gatad1 protein_coding protein_coding MGP_C3HHeJ_T0069635.1 MGP_C3HHeJ_G0028962.1 mouse_genomes_project 5 505354 511582 - MGP_C3HHeJ_P0069635 Gatad1 protein_coding protein_coding MGP_C3HHeJ_T0069636.1 MGP_C3HHeJ_G0028962.1 mouse_genomes_project 5 507041 511769 - MGP_C3HHeJ_P0069636 Gatad1 protein_coding protein_coding MGP_C3HHeJ_T0098492.1 MGP_C3HHeJ_G0036697.1 mouse_genomes_project 5 42476382 42477657 + Gm16014 sense_intronic sense_intronic MGP_C3HHeJ_T0008083.1 MGP_C3HHeJ_G0006582.1 mouse_genomes_project 5 74058235 74060590 + Dancr lincRNA lincRNA MGP_C3HHeJ_T0008084.1 MGP_C3HHeJ_G0006582.1 mouse_genomes_project 5 74058235 74060591 + Dancr lincRNA lincRNA MGP_C3HHeJ_T0074545.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138520066 138555591 + Mlxipl protein_coding processed_transcript MGP_C3HHeJ_T0074546.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138538086 138557766 + Mlxipl protein_coding retained_intron MGP_C3HHeJ_T0074547.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138538097 138558417 + MGP_C3HHeJ_P0074547 Mlxipl protein_coding protein_coding MGP_C3HHeJ_T0074548.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138538099 138573268 + MGP_C3HHeJ_P0074548 Mlxipl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074549.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138538108 138573268 + MGP_C3HHeJ_P0074549 Mlxipl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074550.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138538108 138573268 + MGP_C3HHeJ_P0074550 Mlxipl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074551.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138538108 138573268 + MGP_C3HHeJ_P0074551 Mlxipl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074552.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138538113 138573728 + MGP_C3HHeJ_P0074552 Mlxipl protein_coding protein_coding MGP_C3HHeJ_T0074553.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138568955 138569956 + MGP_C3HHeJ_P0074553 Mlxipl protein_coding protein_coding MGP_C3HHeJ_T0074554.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138568976 138571084 + MGP_C3HHeJ_P0074554 Mlxipl protein_coding protein_coding MGP_C3HHeJ_T0073015.1 MGP_C3HHeJ_G0029599.1 mouse_genomes_project 5 114327547 114368533 + MGP_C3HHeJ_P0073015 Tpst2 protein_coding protein_coding MGP_C3HHeJ_T0073016.1 MGP_C3HHeJ_G0029599.1 mouse_genomes_project 5 114327560 114362280 + Tpst2 protein_coding retained_intron MGP_C3HHeJ_T0073017.1 MGP_C3HHeJ_G0029599.1 mouse_genomes_project 5 114327563 114368527 + MGP_C3HHeJ_P0073017 Tpst2 protein_coding protein_coding MGP_C3HHeJ_T0073018.1 MGP_C3HHeJ_G0029599.1 mouse_genomes_project 5 114339599 114360980 + MGP_C3HHeJ_P0073018 Tpst2 protein_coding protein_coding MGP_C3HHeJ_T0073019.1 MGP_C3HHeJ_G0029599.1 mouse_genomes_project 5 114357137 114368129 + MGP_C3HHeJ_P0073019 Tpst2 protein_coding protein_coding MGP_C3HHeJ_T0073020.1 MGP_C3HHeJ_G0029599.1 mouse_genomes_project 5 114361534 114363060 + MGP_C3HHeJ_P0073020 Tpst2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073021.1 MGP_C3HHeJ_G0029599.1 mouse_genomes_project 5 114366067 114368136 + Tpst2 protein_coding retained_intron MGP_C3HHeJ_T0072858.1 MGP_C3HHeJ_G0029565.1 mouse_genomes_project 5 110891519 110902408 - MGP_C3HHeJ_P0072858 protein_coding protein_coding MGP_C3HHeJ_T0004724.1 MGP_C3HHeJ_G0004070.1 mouse_genomes_project 5 118827190 118857870 + Srrm4os antisense antisense MGP_C3HHeJ_T0004725.1 MGP_C3HHeJ_G0004070.1 mouse_genomes_project 5 118827190 118854481 + Srrm4os antisense antisense MGP_C3HHeJ_T0001484.1 MGP_C3HHeJ_G0001411.1 mouse_genomes_project 5 38147576 38150994 - TEC TEC MGP_C3HHeJ_T0015012.1 MGP_C3HHeJ_G0013116.1 mouse_genomes_project 5 148954593 148954764 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008325.1 MGP_C3HHeJ_G0006746.1 mouse_genomes_project 5 138337541 138338394 + 4933439J24Rik lincRNA lincRNA MGP_C3HHeJ_T0008351.1 MGP_C3HHeJ_G0006767.1 mouse_genomes_project 5 148008440 148012124 + D130017N08Rik lincRNA lincRNA MGP_C3HHeJ_T0015034.1 MGP_C3HHeJ_G0013138.1 mouse_genomes_project 5 154468692 154469151 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004762.1 MGP_C3HHeJ_G0004094.1 mouse_genomes_project 5 127272735 127273447 + Gm42425 antisense antisense MGP_C3HHeJ_T0098484.1 MGP_C3HHeJ_G0036689.1 mouse_genomes_project 5 1863429 1865348 - Gm43111 sense_intronic sense_intronic MGP_C3HHeJ_T0001473.1 MGP_C3HHeJ_G0001400.1 mouse_genomes_project 5 32995498 32995967 + TEC TEC MGP_C3HHeJ_T0001570.1 MGP_C3HHeJ_G0001496.1 mouse_genomes_project 5 56986409 56988990 + TEC TEC MGP_C3HHeJ_T0004564.1 MGP_C3HHeJ_G0003949.1 mouse_genomes_project 5 13486893 13490776 - Gm43000 antisense antisense MGP_C3HHeJ_T0100723.1 MGP_C3HHeJ_G0038917.1 mouse_genomes_project 5 109618001 109618133 + Gm22270 snoRNA snoRNA MGP_C3HHeJ_T0001549.1 MGP_C3HHeJ_G0001475.1 mouse_genomes_project 5 49804688 49807129 + TEC TEC MGP_C3HHeJ_T0015040.1 MGP_C3HHeJ_G0013144.1 mouse_genomes_project 5 156174988 156175512 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073299.1 MGP_C3HHeJ_G0029655.1 mouse_genomes_project 5 117465396 117492916 - MGP_C3HHeJ_P0073299 Cabp1 protein_coding protein_coding MGP_C3HHeJ_T0073300.1 MGP_C3HHeJ_G0029655.1 mouse_genomes_project 5 117465396 117484841 - MGP_C3HHeJ_P0073300 Cabp1 protein_coding protein_coding MGP_C3HHeJ_T0073301.1 MGP_C3HHeJ_G0029655.1 mouse_genomes_project 5 117465420 117479951 - Cabp1 protein_coding processed_transcript MGP_C3HHeJ_T0073302.1 MGP_C3HHeJ_G0029655.1 mouse_genomes_project 5 117465652 117484651 - MGP_C3HHeJ_P0073302 Cabp1 protein_coding protein_coding MGP_C3HHeJ_T0073303.1 MGP_C3HHeJ_G0029655.1 mouse_genomes_project 5 117465677 117484588 - MGP_C3HHeJ_P0073303 Cabp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073304.1 MGP_C3HHeJ_G0029655.1 mouse_genomes_project 5 117470535 117479788 - Cabp1 protein_coding retained_intron MGP_C3HHeJ_T0073305.1 MGP_C3HHeJ_G0029655.1 mouse_genomes_project 5 117478765 117482673 - Cabp1 protein_coding retained_intron MGP_C3HHeJ_T0072191.1 MGP_C3HHeJ_G0029419.1 mouse_genomes_project 5 91095171 91096457 + MGP_C3HHeJ_P0072191 Gm9958 protein_coding protein_coding MGP_C3HHeJ_T0001482.1 MGP_C3HHeJ_G0001409.1 mouse_genomes_project 5 36640997 36642405 - TEC TEC MGP_C3HHeJ_T0000002.1 MGP_C3HHeJ_G0000002.1 mouse_genomes_project 5 18345552 18349328 + Gm29254 3prime_overlapping_ncRNA 3prime_overlapping_ncRNA MGP_C3HHeJ_T0000003.1 MGP_C3HHeJ_G0000002.1 mouse_genomes_project 5 18345552 18349325 + Gm29254 3prime_overlapping_ncRNA 3prime_overlapping_ncRNA MGP_C3HHeJ_T0001493.1 MGP_C3HHeJ_G0001420.1 mouse_genomes_project 5 42379761 42381833 - TEC TEC MGP_C3HHeJ_T0075457.1 MGP_C3HHeJ_G0030054.1 mouse_genomes_project 5 149385371 149398709 - MGP_C3HHeJ_P0075457 Pdap1 protein_coding protein_coding MGP_C3HHeJ_T0075458.1 MGP_C3HHeJ_G0030054.1 mouse_genomes_project 5 149387655 149395167 - Pdap1 protein_coding processed_transcript MGP_C3HHeJ_T0075459.1 MGP_C3HHeJ_G0030054.1 mouse_genomes_project 5 149388942 149393044 - Pdap1 protein_coding retained_intron MGP_C3HHeJ_T0075460.1 MGP_C3HHeJ_G0030054.1 mouse_genomes_project 5 149390746 149393198 - Pdap1 protein_coding retained_intron MGP_C3HHeJ_T0075461.1 MGP_C3HHeJ_G0030054.1 mouse_genomes_project 5 149395048 149398469 - Pdap1 protein_coding retained_intron MGP_C3HHeJ_T0072271.1 MGP_C3HHeJ_G0029444.1 mouse_genomes_project 5 93028642 93062463 - MGP_C3HHeJ_P0072271 Ppef2 protein_coding protein_coding MGP_C3HHeJ_T0072272.1 MGP_C3HHeJ_G0029444.1 mouse_genomes_project 5 93028652 93030986 - Ppef2 protein_coding processed_transcript MGP_C3HHeJ_T0072273.1 MGP_C3HHeJ_G0029444.1 mouse_genomes_project 5 93028937 93059351 - MGP_C3HHeJ_P0072273 Ppef2 protein_coding protein_coding MGP_C3HHeJ_T0102041.1 MGP_C3HHeJ_G0040006.1 mouse_genomes_project 5 87854206 87875725 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010616.1 MGP_C3HHeJ_G0008749.1 mouse_genomes_project 5 108543564 108543649 - Gm27527 miRNA miRNA MGP_C3HHeJ_T0001843.1 MGP_C3HHeJ_G0001765.1 mouse_genomes_project 5 138347601 138349223 - TEC TEC MGP_C3HHeJ_T0014939.1 MGP_C3HHeJ_G0013043.1 mouse_genomes_project 5 111638646 111639015 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001430.1 MGP_C3HHeJ_G0001360.1 mouse_genomes_project 5 14103629 14104622 + TEC TEC MGP_C3HHeJ_T0071400.1 MGP_C3HHeJ_G0029262.1 mouse_genomes_project 5 63110828 63270021 + Nwd2 protein_coding retained_intron MGP_C3HHeJ_T0071401.1 MGP_C3HHeJ_G0029262.1 mouse_genomes_project 5 63110834 63291471 + MGP_C3HHeJ_P0071401 Nwd2 protein_coding protein_coding MGP_C3HHeJ_T0071402.1 MGP_C3HHeJ_G0029262.1 mouse_genomes_project 5 63111059 63281561 + MGP_C3HHeJ_P0071402 Nwd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071403.1 MGP_C3HHeJ_G0029262.1 mouse_genomes_project 5 63281375 63291471 + MGP_C3HHeJ_P0071403 Nwd2 protein_coding protein_coding MGP_C3HHeJ_T0017943.1 MGP_C3HHeJ_G0015366.1 mouse_genomes_project 5 76364348 76374997 + 4930432L08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0102035.1 MGP_C3HHeJ_G0040000.1 mouse_genomes_project 5 87388500 87392177 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001717.1 MGP_C3HHeJ_G0001641.1 mouse_genomes_project 5 110090229 110091609 - TEC TEC MGP_C3HHeJ_T0072759.1 MGP_C3HHeJ_G0029546.1 mouse_genomes_project 5 109623075 109705306 - MGP_C3HHeJ_P0072759 Fam69a protein_coding protein_coding MGP_C3HHeJ_T0072760.1 MGP_C3HHeJ_G0029546.1 mouse_genomes_project 5 109624725 109705254 - MGP_C3HHeJ_P0072760 Fam69a protein_coding protein_coding MGP_C3HHeJ_T0072761.1 MGP_C3HHeJ_G0029546.1 mouse_genomes_project 5 109629348 109690573 - MGP_C3HHeJ_P0072761 Fam69a protein_coding protein_coding MGP_C3HHeJ_T0010641.1 MGP_C3HHeJ_G0008774.1 mouse_genomes_project 5 140903571 140903668 + Mir8116 miRNA miRNA MGP_C3HHeJ_T0072012.1 MGP_C3HHeJ_G0029363.1 mouse_genomes_project 5 86529538 86595088 - MGP_C3HHeJ_P0072012 Cenpc1 protein_coding protein_coding MGP_C3HHeJ_T0072013.1 MGP_C3HHeJ_G0029363.1 mouse_genomes_project 5 86569591 86595052 - Cenpc1 protein_coding retained_intron MGP_C3HHeJ_T0072014.1 MGP_C3HHeJ_G0029363.1 mouse_genomes_project 5 86584124 86595027 - Cenpc1 protein_coding retained_intron MGP_C3HHeJ_T0073154.1 MGP_C3HHeJ_G0029626.1 mouse_genomes_project 5 116246013 116273318 + Usp30 protein_coding processed_transcript MGP_C3HHeJ_T0073155.1 MGP_C3HHeJ_G0029626.1 mouse_genomes_project 5 116246066 116289581 + MGP_C3HHeJ_P0073155 Usp30 protein_coding protein_coding MGP_C3HHeJ_T0073156.1 MGP_C3HHeJ_G0029626.1 mouse_genomes_project 5 116246302 116270833 + Usp30 protein_coding processed_transcript MGP_C3HHeJ_T0073157.1 MGP_C3HHeJ_G0029626.1 mouse_genomes_project 5 116284076 116308491 + MGP_C3HHeJ_P0073157 Usp30 protein_coding protein_coding MGP_C3HHeJ_T0073158.1 MGP_C3HHeJ_G0029626.1 mouse_genomes_project 5 116284121 116304868 + MGP_C3HHeJ_P0073158 Usp30 protein_coding protein_coding MGP_C3HHeJ_T0073159.1 MGP_C3HHeJ_G0029626.1 mouse_genomes_project 5 116287473 116296050 + Usp30 protein_coding retained_intron MGP_C3HHeJ_T0073160.1 MGP_C3HHeJ_G0029626.1 mouse_genomes_project 5 116294859 116295379 + Usp30 protein_coding retained_intron MGP_C3HHeJ_T0001403.1 MGP_C3HHeJ_G0001333.1 mouse_genomes_project 5 5458124 5460188 - TEC TEC MGP_C3HHeJ_T0001539.1 MGP_C3HHeJ_G0001465.1 mouse_genomes_project 5 47981404 47982036 - TEC TEC MGP_C3HHeJ_T0069642.1 MGP_C3HHeJ_G0028964.1 mouse_genomes_project 5 555480 673529 - MGP_C3HHeJ_P0069642 Ankib1 protein_coding protein_coding MGP_C3HHeJ_T0069643.1 MGP_C3HHeJ_G0028964.1 mouse_genomes_project 5 558949 568175 - Ankib1 protein_coding retained_intron MGP_C3HHeJ_T0069644.1 MGP_C3HHeJ_G0028964.1 mouse_genomes_project 5 559360 667609 - MGP_C3HHeJ_P0069644 Ankib1 protein_coding protein_coding MGP_C3HHeJ_T0069645.1 MGP_C3HHeJ_G0028964.1 mouse_genomes_project 5 560281 560710 - Ankib1 protein_coding retained_intron MGP_C3HHeJ_T0069646.1 MGP_C3HHeJ_G0028964.1 mouse_genomes_project 5 566031 567912 - Ankib1 protein_coding retained_intron MGP_C3HHeJ_T0069647.1 MGP_C3HHeJ_G0028964.1 mouse_genomes_project 5 605106 673391 - Ankib1 protein_coding retained_intron MGP_C3HHeJ_T0099455.1 MGP_C3HHeJ_G0037649.1 mouse_genomes_project 5 84124773 84124895 - Gm25806 snRNA snRNA MGP_C3HHeJ_T0004802.1 MGP_C3HHeJ_G0004123.1 mouse_genomes_project 5 144062058 144074235 + Gm16122 antisense antisense MGP_C3HHeJ_T0098486.1 MGP_C3HHeJ_G0036691.1 mouse_genomes_project 5 2339090 2341719 - Gm43727 sense_intronic sense_intronic MGP_C3HHeJ_T0001420.1 MGP_C3HHeJ_G0001350.1 mouse_genomes_project 5 11464675 11466549 + TEC TEC MGP_C3HHeJ_T0098517.1 MGP_C3HHeJ_G0036718.1 mouse_genomes_project 5 154225031 154226752 + 4933425D22Rik sense_intronic sense_intronic MGP_C3HHeJ_T0071666.1 MGP_C3HHeJ_G0029305.1 mouse_genomes_project 5 70508701 70595684 - MGP_C3HHeJ_P0071666 Gabrg1 protein_coding protein_coding MGP_C3HHeJ_T0071667.1 MGP_C3HHeJ_G0029305.1 mouse_genomes_project 5 70509429 70595271 - MGP_C3HHeJ_P0071667 Gabrg1 protein_coding protein_coding MGP_C3HHeJ_T0071668.1 MGP_C3HHeJ_G0029305.1 mouse_genomes_project 5 70526680 70595381 - Gabrg1 protein_coding retained_intron MGP_C3HHeJ_T0071669.1 MGP_C3HHeJ_G0029305.1 mouse_genomes_project 5 70567446 70595381 - Gabrg1 protein_coding retained_intron MGP_C3HHeJ_T0001837.1 MGP_C3HHeJ_G0001760.1 mouse_genomes_project 5 137410333 137411299 - TEC TEC MGP_C3HHeJ_T0070644.1 MGP_C3HHeJ_G0029137.1 mouse_genomes_project 5 31131095 31194896 - MGP_C3HHeJ_P0070644 Prr14l protein_coding protein_coding MGP_C3HHeJ_T0070645.1 MGP_C3HHeJ_G0029137.1 mouse_genomes_project 5 31134912 31137378 - Prr14l protein_coding retained_intron MGP_C3HHeJ_T0070646.1 MGP_C3HHeJ_G0029137.1 mouse_genomes_project 5 31175209 31194876 - MGP_C3HHeJ_P0070646 Prr14l protein_coding protein_coding MGP_C3HHeJ_T0001607.1 MGP_C3HHeJ_G0001532.1 mouse_genomes_project 5 65437764 65439386 + TEC TEC MGP_C3HHeJ_T0074334.1 MGP_C3HHeJ_G0029835.1 mouse_genomes_project 5 133339817 133350757 + MGP_C3HHeJ_P0074334 Kctd7 protein_coding protein_coding MGP_C3HHeJ_T0074335.1 MGP_C3HHeJ_G0029835.1 mouse_genomes_project 5 133339880 133346683 + MGP_C3HHeJ_P0074335 Kctd7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074336.1 MGP_C3HHeJ_G0029835.1 mouse_genomes_project 5 133340060 133347445 + MGP_C3HHeJ_P0074336 Kctd7 protein_coding protein_coding MGP_C3HHeJ_T0071851.1 MGP_C3HHeJ_G0029338.1 mouse_genomes_project 5 75599004 75682064 + MGP_C3HHeJ_P0071851 Kit protein_coding protein_coding MGP_C3HHeJ_T0071852.1 MGP_C3HHeJ_G0029338.1 mouse_genomes_project 5 75599043 75682064 + MGP_C3HHeJ_P0071852 Kit protein_coding protein_coding MGP_C3HHeJ_T0071853.1 MGP_C3HHeJ_G0029338.1 mouse_genomes_project 5 75637014 75647390 + Kit protein_coding retained_intron MGP_C3HHeJ_T0071854.1 MGP_C3HHeJ_G0029338.1 mouse_genomes_project 5 75663513 75665423 + Kit protein_coding retained_intron MGP_C3HHeJ_T0071855.1 MGP_C3HHeJ_G0029338.1 mouse_genomes_project 5 75668175 75671322 + Kit protein_coding retained_intron MGP_C3HHeJ_T0071856.1 MGP_C3HHeJ_G0029338.1 mouse_genomes_project 5 75671034 75678198 + Kit protein_coding retained_intron MGP_C3HHeJ_T0071857.1 MGP_C3HHeJ_G0029338.1 mouse_genomes_project 5 75674423 75682036 + Kit protein_coding retained_intron MGP_C3HHeJ_T0071858.1 MGP_C3HHeJ_G0029338.1 mouse_genomes_project 5 75674522 75677623 + Kit protein_coding retained_intron MGP_C3HHeJ_T0004594.1 MGP_C3HHeJ_G0003974.1 mouse_genomes_project 5 33465154 33466730 - Gm43791 antisense antisense MGP_C3HHeJ_T0008111.1 MGP_C3HHeJ_G0006604.1 mouse_genomes_project 5 87286798 87304100 - Gm43057 lincRNA lincRNA MGP_C3HHeJ_T0008294.1 MGP_C3HHeJ_G0006726.1 mouse_genomes_project 5 129602902 129604028 - Gm42592 lincRNA lincRNA MGP_C3HHeJ_T0001747.1 MGP_C3HHeJ_G0001671.1 mouse_genomes_project 5 119233983 119234416 + TEC TEC MGP_C3HHeJ_T0014689.1 MGP_C3HHeJ_G0012793.1 mouse_genomes_project 5 13350472 13350881 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072677.1 MGP_C3HHeJ_G0029530.1 mouse_genomes_project 5 108508735 108565064 - MGP_C3HHeJ_P0072677 Hfm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072678.1 MGP_C3HHeJ_G0029530.1 mouse_genomes_project 5 108508737 108596451 - MGP_C3HHeJ_P0072678 Hfm1 protein_coding protein_coding MGP_C3HHeJ_T0072679.1 MGP_C3HHeJ_G0029530.1 mouse_genomes_project 5 108508740 108596009 - MGP_C3HHeJ_P0072679 Hfm1 protein_coding protein_coding MGP_C3HHeJ_T0072680.1 MGP_C3HHeJ_G0029530.1 mouse_genomes_project 5 108509202 108596014 - MGP_C3HHeJ_P0072680 Hfm1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0072681.1 MGP_C3HHeJ_G0029530.1 mouse_genomes_project 5 108510107 108559703 - MGP_C3HHeJ_P0072681 Hfm1 protein_coding protein_coding MGP_C3HHeJ_T0072682.1 MGP_C3HHeJ_G0029530.1 mouse_genomes_project 5 108572770 108596348 - Hfm1 protein_coding retained_intron MGP_C3HHeJ_T0072683.1 MGP_C3HHeJ_G0029530.1 mouse_genomes_project 5 108572770 108596009 - MGP_C3HHeJ_P0072683 Hfm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072684.1 MGP_C3HHeJ_G0029530.1 mouse_genomes_project 5 108572954 108595971 - MGP_C3HHeJ_P0072684 Hfm1 protein_coding protein_coding MGP_C3HHeJ_T0074832.1 MGP_C3HHeJ_G0029922.1 mouse_genomes_project 5 141131577 141132565 - MGP_C3HHeJ_P0074832 Pop7 protein_coding protein_coding MGP_C3HHeJ_T0074833.1 MGP_C3HHeJ_G0029922.1 mouse_genomes_project 5 141131578 141132658 - MGP_C3HHeJ_P0074833 Pop7 protein_coding protein_coding MGP_C3HHeJ_T0074955.1 MGP_C3HHeJ_G0029948.1 mouse_genomes_project 5 141768924 141795480 + MGP_C3HHeJ_P0074955 Zkscan1 protein_coding protein_coding MGP_C3HHeJ_T0074956.1 MGP_C3HHeJ_G0029948.1 mouse_genomes_project 5 141768924 141795480 + MGP_C3HHeJ_P0074956 Zkscan1 protein_coding protein_coding MGP_C3HHeJ_T0074957.1 MGP_C3HHeJ_G0029948.1 mouse_genomes_project 5 141768960 141792156 + MGP_C3HHeJ_P0074957 Zkscan1 protein_coding protein_coding MGP_C3HHeJ_T0074958.1 MGP_C3HHeJ_G0029948.1 mouse_genomes_project 5 141778538 141792155 + MGP_C3HHeJ_P0074958 Zkscan1 protein_coding protein_coding MGP_C3HHeJ_T0014950.1 MGP_C3HHeJ_G0013054.1 mouse_genomes_project 5 117082618 117083238 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075736.1 MGP_C3HHeJ_G0030109.1 mouse_genomes_project 5 155538190 155683359 + MGP_C3HHeJ_P0075736 Pds5b protein_coding protein_coding MGP_C3HHeJ_T0075737.1 MGP_C3HHeJ_G0030109.1 mouse_genomes_project 5 155538190 155684184 + MGP_C3HHeJ_P0075737 Pds5b protein_coding protein_coding MGP_C3HHeJ_T0075738.1 MGP_C3HHeJ_G0030109.1 mouse_genomes_project 5 155538278 155684161 + MGP_C3HHeJ_P0075738 Pds5b protein_coding protein_coding MGP_C3HHeJ_T0075739.1 MGP_C3HHeJ_G0030109.1 mouse_genomes_project 5 155621675 155622467 + Pds5b protein_coding retained_intron MGP_C3HHeJ_T0075740.1 MGP_C3HHeJ_G0030109.1 mouse_genomes_project 5 155630213 155671400 + MGP_C3HHeJ_P0075740 Pds5b protein_coding protein_coding MGP_C3HHeJ_T0075741.1 MGP_C3HHeJ_G0030109.1 mouse_genomes_project 5 155633334 155643836 + Pds5b protein_coding processed_transcript MGP_C3HHeJ_T0075742.1 MGP_C3HHeJ_G0030109.1 mouse_genomes_project 5 155667547 155673689 + Pds5b protein_coding processed_transcript MGP_C3HHeJ_T0075743.1 MGP_C3HHeJ_G0030109.1 mouse_genomes_project 5 155677528 155683974 + Pds5b protein_coding retained_intron MGP_C3HHeJ_T0073584.1 MGP_C3HHeJ_G0029710.1 mouse_genomes_project 5 123447276 123460351 - MGP_C3HHeJ_P0073584 protein_coding protein_coding MGP_C3HHeJ_T0070284.1 MGP_C3HHeJ_G0029081.1 mouse_genomes_project 5 28264870 28278112 + MGP_C3HHeJ_P0070284 Gareml protein_coding protein_coding MGP_C3HHeJ_T0007961.1 MGP_C3HHeJ_G0006496.1 mouse_genomes_project 5 13344271 13364327 - 4930519H02Rik lincRNA lincRNA MGP_C3HHeJ_T0007962.1 MGP_C3HHeJ_G0006496.1 mouse_genomes_project 5 13347429 13364390 - 4930519H02Rik lincRNA lincRNA MGP_C3HHeJ_T0001805.1 MGP_C3HHeJ_G0001728.1 mouse_genomes_project 5 133129969 133133354 + TEC TEC MGP_C3HHeJ_T0001684.1 MGP_C3HHeJ_G0001608.1 mouse_genomes_project 5 94020209 94022117 - TEC TEC MGP_C3HHeJ_T0070603.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946468 29980559 + MGP_C3HHeJ_P0070603 Bre protein_coding protein_coding MGP_C3HHeJ_T0070604.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946688 29980979 + Bre protein_coding retained_intron MGP_C3HHeJ_T0070605.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946709 30331653 + MGP_C3HHeJ_P0070605 Bre protein_coding protein_coding MGP_C3HHeJ_T0070606.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946714 29956338 + Bre protein_coding processed_transcript MGP_C3HHeJ_T0070607.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946724 30252072 + Bre protein_coding retained_intron MGP_C3HHeJ_T0070608.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946732 30085640 + Bre protein_coding retained_intron MGP_C3HHeJ_T0070609.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946748 30331546 + MGP_C3HHeJ_P0070609 Bre protein_coding protein_coding MGP_C3HHeJ_T0070610.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946768 30331438 + MGP_C3HHeJ_P0070610 Bre protein_coding protein_coding MGP_C3HHeJ_T0070611.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946768 30331438 + MGP_C3HHeJ_P0070611 Bre protein_coding protein_coding MGP_C3HHeJ_T0070612.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946768 30331438 + MGP_C3HHeJ_P0070612 Bre protein_coding protein_coding MGP_C3HHeJ_T0070613.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946769 30075160 + MGP_C3HHeJ_P0070613 Bre protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070614.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29950560 30304477 + MGP_C3HHeJ_P0070614 Bre protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070615.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 30038751 30075241 + Bre protein_coding processed_transcript MGP_C3HHeJ_T0070616.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 30291526 30331452 + Bre protein_coding processed_transcript MGP_C3HHeJ_T0070617.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 30326420 30331445 + Bre protein_coding processed_transcript MGP_C3HHeJ_T0102031.1 MGP_C3HHeJ_G0039996.1 mouse_genomes_project 5 49157601 49327517 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0073067.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115159121 115164386 - MGP_C3HHeJ_P0073067 Crybb3 protein_coding protein_coding MGP_C3HHeJ_T0073068.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115159121 115163943 - MGP_C3HHeJ_P0073068 Crybb3 protein_coding protein_coding MGP_C3HHeJ_T0073069.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115159121 115164860 - MGP_C3HHeJ_P0073069 Crybb3 protein_coding protein_coding MGP_C3HHeJ_T0073070.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115159125 115164386 - MGP_C3HHeJ_P0073070 Crybb3 protein_coding protein_coding MGP_C3HHeJ_T0073071.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115159129 115164859 - MGP_C3HHeJ_P0073071 Crybb3 protein_coding protein_coding MGP_C3HHeJ_T0073072.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115160303 115163667 - Crybb3 protein_coding retained_intron MGP_C3HHeJ_T0073073.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115160568 115163942 - Crybb3 protein_coding retained_intron MGP_C3HHeJ_T0073074.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115161666 115163929 - MGP_C3HHeJ_P0073074 Crybb3 protein_coding protein_coding MGP_C3HHeJ_T0073075.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115161749 115164855 - MGP_C3HHeJ_P0073075 Crybb3 protein_coding protein_coding MGP_C3HHeJ_T0073076.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115161815 115164856 - Crybb3 protein_coding processed_transcript MGP_C3HHeJ_T0073077.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115163032 115164335 - MGP_C3HHeJ_P0073077 Crybb3 protein_coding protein_coding MGP_C3HHeJ_T0010653.1 MGP_C3HHeJ_G0008786.1 mouse_genomes_project 5 147348730 147348856 + Gm44405 miRNA miRNA MGP_C3HHeJ_T0070511.1 MGP_C3HHeJ_G0029117.1 mouse_genomes_project 5 29443388 29443946 - MGP_C3HHeJ_P0070511 Gm9970 protein_coding protein_coding MGP_C3HHeJ_T0014808.1 MGP_C3HHeJ_G0012912.1 mouse_genomes_project 5 57437361 57437583 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008000.1 MGP_C3HHeJ_G0006521.1 mouse_genomes_project 5 29815292 29817095 - AI839979 lincRNA lincRNA MGP_C3HHeJ_T0008001.1 MGP_C3HHeJ_G0006521.1 mouse_genomes_project 5 29815802 29817089 - AI839979 lincRNA lincRNA MGP_C3HHeJ_T0073785.1 MGP_C3HHeJ_G0029745.1 mouse_genomes_project 5 125347075 125368213 + MGP_C3HHeJ_P0073785 Anapc7 protein_coding protein_coding MGP_C3HHeJ_T0073786.1 MGP_C3HHeJ_G0029745.1 mouse_genomes_project 5 125347075 125366735 + MGP_C3HHeJ_P0073786 Anapc7 protein_coding protein_coding MGP_C3HHeJ_T0073787.1 MGP_C3HHeJ_G0029745.1 mouse_genomes_project 5 125362674 125363786 + Anapc7 protein_coding retained_intron MGP_C3HHeJ_T0073788.1 MGP_C3HHeJ_G0029745.1 mouse_genomes_project 5 125363439 125365104 + Anapc7 protein_coding retained_intron MGP_C3HHeJ_T0073789.1 MGP_C3HHeJ_G0029745.1 mouse_genomes_project 5 125364675 125365083 + MGP_C3HHeJ_P0073789 Anapc7 protein_coding protein_coding MGP_C3HHeJ_T0073323.1 MGP_C3HHeJ_G0029658.1 mouse_genomes_project 5 117585692 117602796 + MGP_C3HHeJ_P0073323 Coq5 protein_coding protein_coding MGP_C3HHeJ_T0073324.1 MGP_C3HHeJ_G0029658.1 mouse_genomes_project 5 117585721 117586870 + Coq5 protein_coding retained_intron MGP_C3HHeJ_T0073325.1 MGP_C3HHeJ_G0029658.1 mouse_genomes_project 5 117590074 117602132 + MGP_C3HHeJ_P0073325 Coq5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008358.1 MGP_C3HHeJ_G0006773.1 mouse_genomes_project 5 151914997 151915541 + Gm27033 lincRNA lincRNA MGP_C3HHeJ_T0014870.1 MGP_C3HHeJ_G0012974.1 mouse_genomes_project 5 88167927 88169842 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008179.1 MGP_C3HHeJ_G0006657.1 mouse_genomes_project 5 110141602 110145323 + Gm43082 lincRNA lincRNA MGP_C3HHeJ_T0008064.1 MGP_C3HHeJ_G0006569.1 mouse_genomes_project 5 63932752 63977740 + Gm31363 lincRNA lincRNA MGP_C3HHeJ_T0001693.1 MGP_C3HHeJ_G0001617.1 mouse_genomes_project 5 99534823 99537940 + TEC TEC MGP_C3HHeJ_T0074044.1 MGP_C3HHeJ_G0029783.1 mouse_genomes_project 5 127150160 127185733 - MGP_C3HHeJ_P0074044 Pitpnm2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0074045.1 MGP_C3HHeJ_G0029783.1 mouse_genomes_project 5 127150168 127284475 - MGP_C3HHeJ_P0074045 Pitpnm2 protein_coding protein_coding MGP_C3HHeJ_T0074046.1 MGP_C3HHeJ_G0029783.1 mouse_genomes_project 5 127151224 127219663 - MGP_C3HHeJ_P0074046 Pitpnm2 protein_coding protein_coding MGP_C3HHeJ_T0074047.1 MGP_C3HHeJ_G0029783.1 mouse_genomes_project 5 127151771 127156024 - Pitpnm2 protein_coding retained_intron MGP_C3HHeJ_T0074048.1 MGP_C3HHeJ_G0029783.1 mouse_genomes_project 5 127152552 127153578 - Pitpnm2 protein_coding retained_intron MGP_C3HHeJ_T0074049.1 MGP_C3HHeJ_G0029783.1 mouse_genomes_project 5 127156686 127158102 - Pitpnm2 protein_coding retained_intron MGP_C3HHeJ_T0074050.1 MGP_C3HHeJ_G0029783.1 mouse_genomes_project 5 127164267 127222227 - MGP_C3HHeJ_P0074050 Pitpnm2 protein_coding protein_coding MGP_C3HHeJ_T0074051.1 MGP_C3HHeJ_G0029783.1 mouse_genomes_project 5 127164440 127171724 - Pitpnm2 protein_coding retained_intron MGP_C3HHeJ_T0074052.1 MGP_C3HHeJ_G0029783.1 mouse_genomes_project 5 127175064 127217599 - MGP_C3HHeJ_P0074052 Pitpnm2 protein_coding protein_coding MGP_C3HHeJ_T0004801.1 MGP_C3HHeJ_G0004122.1 mouse_genomes_project 5 143144315 143145203 - 4930520M14Rik antisense antisense MGP_C3HHeJ_T0102057.1 MGP_C3HHeJ_G0040022.1 mouse_genomes_project 5 146705490 146706001 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007970.1 MGP_C3HHeJ_G0006502.1 mouse_genomes_project 5 20519975 20527931 - A930003O13Rik lincRNA lincRNA MGP_C3HHeJ_T0007971.1 MGP_C3HHeJ_G0006502.1 mouse_genomes_project 5 20520413 20523510 - A930003O13Rik lincRNA lincRNA MGP_C3HHeJ_T0007972.1 MGP_C3HHeJ_G0006502.1 mouse_genomes_project 5 20525065 20527951 - A930003O13Rik lincRNA lincRNA MGP_C3HHeJ_T0004793.1 MGP_C3HHeJ_G0004119.1 mouse_genomes_project 5 141546944 141548984 + antisense antisense MGP_C3HHeJ_T0074575.1 MGP_C3HHeJ_G0029874.1 mouse_genomes_project 5 138807123 138822222 + MGP_C3HHeJ_P0074575 Trim50 protein_coding protein_coding MGP_C3HHeJ_T0074576.1 MGP_C3HHeJ_G0029874.1 mouse_genomes_project 5 138807124 138822573 + MGP_C3HHeJ_P0074576 Trim50 protein_coding protein_coding MGP_C3HHeJ_T0075165.1 MGP_C3HHeJ_G0029991.1 mouse_genomes_project 5 143887457 143958911 + MGP_C3HHeJ_P0075165 Elfn1 protein_coding protein_coding MGP_C3HHeJ_T0075166.1 MGP_C3HHeJ_G0029991.1 mouse_genomes_project 5 143887988 143955229 + Elfn1 protein_coding processed_transcript MGP_C3HHeJ_T0075412.1 MGP_C3HHeJ_G0030048.1 mouse_genomes_project 5 148966535 148991961 - MGP_C3HHeJ_P0075412 Tmem130 protein_coding protein_coding MGP_C3HHeJ_T0075413.1 MGP_C3HHeJ_G0030048.1 mouse_genomes_project 5 148982715 148992130 - Tmem130 protein_coding processed_transcript MGP_C3HHeJ_T0008379.1 MGP_C3HHeJ_G0006791.1 mouse_genomes_project 5 154014058 154028151 - Gm29264 lincRNA lincRNA MGP_C3HHeJ_T0004663.1 MGP_C3HHeJ_G0004030.1 mouse_genomes_project 5 97860324 97864160 - Gm42604 antisense antisense MGP_C3HHeJ_T0004766.1 MGP_C3HHeJ_G0004097.1 mouse_genomes_project 5 128074910 128075440 + Gm42838 antisense antisense MGP_C3HHeJ_T0008125.1 MGP_C3HHeJ_G0006618.1 mouse_genomes_project 5 98062950 98077945 + Gm8013 lincRNA lincRNA MGP_C3HHeJ_T0072738.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109433428 109518019 - MGP_C3HHeJ_P0072738 Evi5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0072739.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109433432 109578190 - MGP_C3HHeJ_P0072739 Evi5 protein_coding protein_coding MGP_C3HHeJ_T0072740.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109435913 109501949 - Evi5 protein_coding retained_intron MGP_C3HHeJ_T0072741.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109454645 109491715 - Evi5 protein_coding retained_intron MGP_C3HHeJ_T0072742.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109478134 109572243 - MGP_C3HHeJ_P0072742 Evi5 protein_coding protein_coding MGP_C3HHeJ_T0072743.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109505742 109572243 - MGP_C3HHeJ_P0072743 Evi5 protein_coding protein_coding MGP_C3HHeJ_T0072744.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109507327 109508976 - Evi5 protein_coding retained_intron MGP_C3HHeJ_T0072745.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109507777 109578127 - Evi5 protein_coding processed_transcript MGP_C3HHeJ_T0072746.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109507777 109578142 - MGP_C3HHeJ_P0072746 Evi5 protein_coding protein_coding MGP_C3HHeJ_T0072747.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109511811 109533101 - Evi5 protein_coding retained_intron MGP_C3HHeJ_T0072748.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109511847 109571463 - MGP_C3HHeJ_P0072748 Evi5 protein_coding protein_coding MGP_C3HHeJ_T0072749.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109515434 109571974 - Evi5 protein_coding processed_transcript MGP_C3HHeJ_T0072751.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109547610 109578139 - Evi5 protein_coding processed_transcript MGP_C3HHeJ_T0072752.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109575712 109578135 - Evi5 protein_coding processed_transcript MGP_C3HHeJ_T0072015.1 MGP_C3HHeJ_G0029364.1 mouse_genomes_project 5 86601319 86635627 + MGP_C3HHeJ_P0072015 Stap1 protein_coding protein_coding MGP_C3HHeJ_T0072016.1 MGP_C3HHeJ_G0029364.1 mouse_genomes_project 5 86601323 86626868 + Stap1 protein_coding retained_intron MGP_C3HHeJ_T0072017.1 MGP_C3HHeJ_G0029364.1 mouse_genomes_project 5 86601347 86615279 + Stap1 protein_coding retained_intron MGP_C3HHeJ_T0072018.1 MGP_C3HHeJ_G0029364.1 mouse_genomes_project 5 86601356 86615275 + Stap1 protein_coding retained_intron MGP_C3HHeJ_T0072019.1 MGP_C3HHeJ_G0029364.1 mouse_genomes_project 5 86601385 86633381 + MGP_C3HHeJ_P0072019 Stap1 protein_coding protein_coding MGP_C3HHeJ_T0072020.1 MGP_C3HHeJ_G0029364.1 mouse_genomes_project 5 86615736 86623930 + Stap1 protein_coding retained_intron MGP_C3HHeJ_T0011499.1 MGP_C3HHeJ_G0009632.1 mouse_genomes_project 5 65941777 65942100 - Gm23183 misc_RNA misc_RNA MGP_C3HHeJ_T0075340.1 MGP_C3HHeJ_G0030030.1 mouse_genomes_project 5 147727733 147754723 - MGP_C3HHeJ_P0075340 Rac1 protein_coding protein_coding MGP_C3HHeJ_T0075341.1 MGP_C3HHeJ_G0030030.1 mouse_genomes_project 5 147729581 147754680 - MGP_C3HHeJ_P0075341 Rac1 protein_coding protein_coding MGP_C3HHeJ_T0075342.1 MGP_C3HHeJ_G0030030.1 mouse_genomes_project 5 147733282 147744862 - Rac1 protein_coding processed_transcript MGP_C3HHeJ_T0075343.1 MGP_C3HHeJ_G0030030.1 mouse_genomes_project 5 147740906 147744288 - Rac1 protein_coding processed_transcript MGP_C3HHeJ_T0004570.1 MGP_C3HHeJ_G0003954.1 mouse_genomes_project 5 21003280 21026157 - Gm42948 antisense antisense MGP_C3HHeJ_T0017917.1 MGP_C3HHeJ_G0015358.1 mouse_genomes_project 5 51204482 51209523 + 9230114K14Rik processed_transcript lincRNA MGP_C3HHeJ_T0017918.1 MGP_C3HHeJ_G0015358.1 mouse_genomes_project 5 51204489 51295052 + 9230114K14Rik processed_transcript lincRNA MGP_C3HHeJ_T0017919.1 MGP_C3HHeJ_G0015358.1 mouse_genomes_project 5 51204489 51213000 + 9230114K14Rik processed_transcript retained_intron MGP_C3HHeJ_T0017920.1 MGP_C3HHeJ_G0015358.1 mouse_genomes_project 5 51204523 51262028 + 9230114K14Rik processed_transcript lincRNA MGP_C3HHeJ_T0099483.1 MGP_C3HHeJ_G0037677.1 mouse_genomes_project 5 126362127 126362296 + Gm23458 snRNA snRNA MGP_C3HHeJ_T0001806.1 MGP_C3HHeJ_G0001729.1 mouse_genomes_project 5 133149825 133151686 + TEC TEC MGP_C3HHeJ_T0001543.1 MGP_C3HHeJ_G0001469.1 mouse_genomes_project 5 48128099 48128487 - TEC TEC MGP_C3HHeJ_T0071381.1 MGP_C3HHeJ_G0029257.1 mouse_genomes_project 5 53127049 53258072 + MGP_C3HHeJ_P0071381 Stim2 protein_coding protein_coding MGP_C3HHeJ_T0071382.1 MGP_C3HHeJ_G0029257.1 mouse_genomes_project 5 53127369 53255764 + MGP_C3HHeJ_P0071382 Stim2 protein_coding protein_coding MGP_C3HHeJ_T0071383.1 MGP_C3HHeJ_G0029257.1 mouse_genomes_project 5 53206750 53238375 + Stim2 protein_coding processed_transcript MGP_C3HHeJ_T0071384.1 MGP_C3HHeJ_G0029257.1 mouse_genomes_project 5 53252873 53255602 + Stim2 protein_coding retained_intron MGP_C3HHeJ_T0069956.1 MGP_C3HHeJ_G0029016.1 mouse_genomes_project 5 19361400 19381357 + MGP_C3HHeJ_P0069956 Armc10 protein_coding protein_coding MGP_C3HHeJ_T0069957.1 MGP_C3HHeJ_G0029016.1 mouse_genomes_project 5 19361466 19382809 + MGP_C3HHeJ_P0069957 Armc10 protein_coding protein_coding MGP_C3HHeJ_T0069958.1 MGP_C3HHeJ_G0029016.1 mouse_genomes_project 5 19361604 19364372 + Armc10 protein_coding processed_transcript MGP_C3HHeJ_T0069959.1 MGP_C3HHeJ_G0029016.1 mouse_genomes_project 5 19361640 19382723 + MGP_C3HHeJ_P0069959 Armc10 protein_coding protein_coding MGP_C3HHeJ_T0069960.1 MGP_C3HHeJ_G0029016.1 mouse_genomes_project 5 19361918 19381359 + MGP_C3HHeJ_P0069960 Armc10 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069961.1 MGP_C3HHeJ_G0029016.1 mouse_genomes_project 5 19364221 19367837 + Armc10 protein_coding retained_intron MGP_C3HHeJ_T0014835.1 MGP_C3HHeJ_G0012939.1 mouse_genomes_project 5 70303875 70304489 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100712.1 MGP_C3HHeJ_G0038906.1 mouse_genomes_project 5 88295877 88296000 + Gm25066 snoRNA snoRNA MGP_C3HHeJ_T0075036.1 MGP_C3HHeJ_G0029964.1 mouse_genomes_project 5 142351568 142370586 + MGP_C3HHeJ_P0075036 Zfp157 protein_coding protein_coding MGP_C3HHeJ_T0075037.1 MGP_C3HHeJ_G0029964.1 mouse_genomes_project 5 142351579 142358119 + Zfp157 protein_coding retained_intron MGP_C3HHeJ_T0075038.1 MGP_C3HHeJ_G0029964.1 mouse_genomes_project 5 142351607 142357195 + Zfp157 protein_coding retained_intron MGP_C3HHeJ_T0075039.1 MGP_C3HHeJ_G0029964.1 mouse_genomes_project 5 142351611 142358163 + Zfp157 protein_coding retained_intron MGP_C3HHeJ_T0075040.1 MGP_C3HHeJ_G0029964.1 mouse_genomes_project 5 142351619 142366257 + MGP_C3HHeJ_P0075040 Zfp157 protein_coding protein_coding MGP_C3HHeJ_T0075041.1 MGP_C3HHeJ_G0029964.1 mouse_genomes_project 5 142351640 142366269 + MGP_C3HHeJ_P0075041 Zfp157 protein_coding protein_coding MGP_C3HHeJ_T0015029.1 MGP_C3HHeJ_G0013133.1 mouse_genomes_project 5 152484694 152485188 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074007.1 MGP_C3HHeJ_G0029776.1 mouse_genomes_project 5 126946263 126957231 + MGP_C3HHeJ_P0074007 Gm43518 protein_coding protein_coding MGP_C3HHeJ_T0004749.1 MGP_C3HHeJ_G0004087.1 mouse_genomes_project 5 125948985 125957978 + A930024E05Rik antisense antisense MGP_C3HHeJ_T0014924.1 MGP_C3HHeJ_G0013028.1 mouse_genomes_project 5 109165371 109165894 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014931.1 MGP_C3HHeJ_G0013035.1 mouse_genomes_project 5 110794216 110794590 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101237.1 MGP_C3HHeJ_G0039365.1 mouse_genomes_project 5 120986056 121009433 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101238.1 MGP_C3HHeJ_G0039365.1 mouse_genomes_project 5 121008772 121009250 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0004574.1 MGP_C3HHeJ_G0003957.1 mouse_genomes_project 5 22662619 22670408 - Gm26648 antisense antisense MGP_C3HHeJ_T0008119.1 MGP_C3HHeJ_G0006612.1 mouse_genomes_project 5 92695141 92697141 - Gm43688 lincRNA lincRNA MGP_C3HHeJ_T0074111.1 MGP_C3HHeJ_G0029793.1 mouse_genomes_project 5 127608580 127626759 + MGP_C3HHeJ_P0074111 Ddx55 protein_coding protein_coding MGP_C3HHeJ_T0074112.1 MGP_C3HHeJ_G0029793.1 mouse_genomes_project 5 127608585 127625054 + MGP_C3HHeJ_P0074112 Ddx55 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074113.1 MGP_C3HHeJ_G0029793.1 mouse_genomes_project 5 127608612 127618726 + Ddx55 protein_coding processed_transcript MGP_C3HHeJ_T0074114.1 MGP_C3HHeJ_G0029793.1 mouse_genomes_project 5 127608630 127626759 + MGP_C3HHeJ_P0074114 Ddx55 protein_coding protein_coding MGP_C3HHeJ_T0074115.1 MGP_C3HHeJ_G0029793.1 mouse_genomes_project 5 127608674 127618782 + Ddx55 protein_coding processed_transcript MGP_C3HHeJ_T0074116.1 MGP_C3HHeJ_G0029793.1 mouse_genomes_project 5 127611377 127612807 + Ddx55 protein_coding retained_intron MGP_C3HHeJ_T0074117.1 MGP_C3HHeJ_G0029793.1 mouse_genomes_project 5 127619896 127624974 + Ddx55 protein_coding processed_transcript MGP_C3HHeJ_T0004636.1 MGP_C3HHeJ_G0004007.1 mouse_genomes_project 5 67301230 67306468 + Gm15478 antisense antisense MGP_C3HHeJ_T0001483.1 MGP_C3HHeJ_G0001410.1 mouse_genomes_project 5 37981758 37983326 - TEC TEC MGP_C3HHeJ_T0004675.1 MGP_C3HHeJ_G0004035.1 mouse_genomes_project 5 101222218 101224518 + antisense antisense MGP_C3HHeJ_T0075336.1 MGP_C3HHeJ_G0030029.1 mouse_genomes_project 5 147688470 147730042 + MGP_C3HHeJ_P0075336 Daglb protein_coding protein_coding MGP_C3HHeJ_T0075337.1 MGP_C3HHeJ_G0030029.1 mouse_genomes_project 5 147688499 147699223 + Daglb protein_coding retained_intron MGP_C3HHeJ_T0075338.1 MGP_C3HHeJ_G0030029.1 mouse_genomes_project 5 147696800 147701670 + Daglb protein_coding retained_intron MGP_C3HHeJ_T0075339.1 MGP_C3HHeJ_G0030029.1 mouse_genomes_project 5 147710497 147713814 + Daglb protein_coding retained_intron MGP_C3HHeJ_T0072659.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108267342 108347425 - MGP_C3HHeJ_P0072659 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072660.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108267344 108346570 - MGP_C3HHeJ_P0072660 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072661.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108267345 108347425 - MGP_C3HHeJ_P0072661 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072662.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108267347 108347192 - MGP_C3HHeJ_P0072662 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072663.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108267676 108274984 - Zfp644 protein_coding processed_transcript MGP_C3HHeJ_T0072664.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108268567 108347400 - Zfp644 protein_coding processed_transcript MGP_C3HHeJ_T0072665.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108287437 108347421 - MGP_C3HHeJ_P0072665 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072666.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108288448 108347159 - MGP_C3HHeJ_P0072666 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072667.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108288675 108318189 - MGP_C3HHeJ_P0072667 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072668.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108288843 108347245 - MGP_C3HHeJ_P0072668 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072669.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108288890 108347159 - MGP_C3HHeJ_P0072669 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072670.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108289033 108347245 - MGP_C3HHeJ_P0072670 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072671.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108338913 108345613 - Zfp644 protein_coding retained_intron MGP_C3HHeJ_T0072672.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108339962 108346761 - Zfp644 protein_coding retained_intron MGP_C3HHeJ_T0072673.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108340733 108347141 - Zfp644 protein_coding processed_transcript MGP_C3HHeJ_T0072674.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108340746 108347139 - Zfp644 protein_coding processed_transcript MGP_C3HHeJ_T0072675.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108345644 108347882 - Zfp644 protein_coding processed_transcript MGP_C3HHeJ_T0072676.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108345949 108346607 - Zfp644 protein_coding processed_transcript MGP_C3HHeJ_T0008267.1 MGP_C3HHeJ_G0006713.1 mouse_genomes_project 5 126011106 126223381 - lincRNA lincRNA MGP_C3HHeJ_T0001508.1 MGP_C3HHeJ_G0001435.1 mouse_genomes_project 5 43395056 43397793 - TEC TEC MGP_C3HHeJ_T0004722.1 MGP_C3HHeJ_G0004068.1 mouse_genomes_project 5 118625701 118637409 + Gm14507 antisense antisense MGP_C3HHeJ_T0008295.1 MGP_C3HHeJ_G0006727.1 mouse_genomes_project 5 129804757 129842583 + Gm43757 lincRNA lincRNA MGP_C3HHeJ_T0008296.1 MGP_C3HHeJ_G0006727.1 mouse_genomes_project 5 129804779 129809614 + Gm43757 lincRNA lincRNA MGP_C3HHeJ_T0014940.1 MGP_C3HHeJ_G0013044.1 mouse_genomes_project 5 112284203 112284522 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014710.1 MGP_C3HHeJ_G0012814.1 mouse_genomes_project 5 19629616 19629901 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074219.1 MGP_C3HHeJ_G0029813.1 mouse_genomes_project 5 131753637 131756794 + MGP_C3HHeJ_P0074219 Fzd10 protein_coding protein_coding MGP_C3HHeJ_T0071962.1 MGP_C3HHeJ_G0029359.1 mouse_genomes_project 5 77435962 77499340 - MGP_C3HHeJ_P0071962 Igfbp7 protein_coding protein_coding MGP_C3HHeJ_T0071963.1 MGP_C3HHeJ_G0029359.1 mouse_genomes_project 5 77435970 77499339 - MGP_C3HHeJ_P0071963 Igfbp7 protein_coding protein_coding MGP_C3HHeJ_T0071399.1 MGP_C3HHeJ_G0029261.1 mouse_genomes_project 5 62211302 62286539 + MGP_C3HHeJ_P0071399 Dthd1 protein_coding protein_coding MGP_C3HHeJ_T0075167.1 MGP_C3HHeJ_G0029992.1 mouse_genomes_project 5 143996691 144320996 - MGP_C3HHeJ_P0075167 Mad1l1 protein_coding protein_coding MGP_C3HHeJ_T0075168.1 MGP_C3HHeJ_G0029992.1 mouse_genomes_project 5 143996691 144320994 - MGP_C3HHeJ_P0075168 Mad1l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075169.1 MGP_C3HHeJ_G0029992.1 mouse_genomes_project 5 143996696 144170079 - Mad1l1 protein_coding processed_transcript MGP_C3HHeJ_T0075170.1 MGP_C3HHeJ_G0029992.1 mouse_genomes_project 5 144077393 144104189 - Mad1l1 protein_coding processed_transcript MGP_C3HHeJ_T0075171.1 MGP_C3HHeJ_G0029992.1 mouse_genomes_project 5 144134160 144169820 - Mad1l1 protein_coding processed_transcript MGP_C3HHeJ_T0075172.1 MGP_C3HHeJ_G0029992.1 mouse_genomes_project 5 144161299 144259346 - Mad1l1 protein_coding processed_transcript MGP_C3HHeJ_T0075312.1 MGP_C3HHeJ_G0030024.1 mouse_genomes_project 5 147503516 147508114 - MGP_C3HHeJ_P0075312 Zfp853 protein_coding protein_coding MGP_C3HHeJ_T0073435.1 MGP_C3HHeJ_G0029678.1 mouse_genomes_project 5 119516376 119541691 - MGP_C3HHeJ_P0073435 Suds3 protein_coding protein_coding MGP_C3HHeJ_T0073436.1 MGP_C3HHeJ_G0029678.1 mouse_genomes_project 5 119516381 119529105 - Suds3 protein_coding retained_intron MGP_C3HHeJ_T0073437.1 MGP_C3HHeJ_G0029678.1 mouse_genomes_project 5 119517133 119541806 - MGP_C3HHeJ_P0073437 Suds3 protein_coding protein_coding MGP_C3HHeJ_T0073438.1 MGP_C3HHeJ_G0029678.1 mouse_genomes_project 5 119519655 119523508 - Suds3 protein_coding retained_intron MGP_C3HHeJ_T0073439.1 MGP_C3HHeJ_G0029678.1 mouse_genomes_project 5 119529991 119539244 - Suds3 protein_coding retained_intron MGP_C3HHeJ_T0073440.1 MGP_C3HHeJ_G0029678.1 mouse_genomes_project 5 119529997 119534566 - Suds3 protein_coding retained_intron MGP_C3HHeJ_T0001618.1 MGP_C3HHeJ_G0001543.1 mouse_genomes_project 5 66050981 66053191 - TEC TEC MGP_C3HHeJ_T0008226.1 MGP_C3HHeJ_G0006683.1 mouse_genomes_project 5 117607363 117625063 + Gm13830 lincRNA lincRNA MGP_C3HHeJ_T0008227.1 MGP_C3HHeJ_G0006683.1 mouse_genomes_project 5 117607379 117608540 + Gm13830 lincRNA lincRNA MGP_C3HHeJ_T0008228.1 MGP_C3HHeJ_G0006683.1 mouse_genomes_project 5 117607380 117623445 + Gm13830 lincRNA lincRNA MGP_C3HHeJ_T0008229.1 MGP_C3HHeJ_G0006683.1 mouse_genomes_project 5 117607390 117608573 + Gm13830 lincRNA lincRNA MGP_C3HHeJ_T0008230.1 MGP_C3HHeJ_G0006683.1 mouse_genomes_project 5 117607450 117607982 + Gm13830 lincRNA lincRNA MGP_C3HHeJ_T0001656.1 MGP_C3HHeJ_G0001580.1 mouse_genomes_project 5 74012750 74017968 - TEC TEC MGP_C3HHeJ_T0008256.1 MGP_C3HHeJ_G0006705.1 mouse_genomes_project 5 122207584 122222375 + Gm16064 lincRNA lincRNA MGP_C3HHeJ_T0071060.1 MGP_C3HHeJ_G0029203.1 mouse_genomes_project 5 36229406 36234832 + MGP_C3HHeJ_P0071060 Cytl1 protein_coding protein_coding MGP_C3HHeJ_T0071061.1 MGP_C3HHeJ_G0029203.1 mouse_genomes_project 5 36232330 36234827 + Cytl1 protein_coding retained_intron MGP_C3HHeJ_T0008086.1 MGP_C3HHeJ_G0006584.1 mouse_genomes_project 5 74746902 74751469 + Gm42575 lincRNA lincRNA MGP_C3HHeJ_T0008123.1 MGP_C3HHeJ_G0006616.1 mouse_genomes_project 5 98017778 98029618 + Gm42601 lincRNA lincRNA MGP_C3HHeJ_T0001532.1 MGP_C3HHeJ_G0001458.1 mouse_genomes_project 5 47883484 47884791 - TEC TEC MGP_C3HHeJ_T0072030.1 MGP_C3HHeJ_G0029369.1 mouse_genomes_project 5 86942395 86996538 - MGP_C3HHeJ_P0072030 Tmprss11a protein_coding protein_coding MGP_C3HHeJ_T0072031.1 MGP_C3HHeJ_G0029369.1 mouse_genomes_project 5 86949836 86952894 - Tmprss11a protein_coding retained_intron MGP_C3HHeJ_T0004615.1 MGP_C3HHeJ_G0003989.1 mouse_genomes_project 5 44096752 44112551 + Gm42413 antisense antisense MGP_C3HHeJ_T0070474.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29381254 29389118 - MGP_C3HHeJ_P0070474 Eif2b4 protein_coding protein_coding MGP_C3HHeJ_T0070475.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29381255 29388827 - MGP_C3HHeJ_P0070475 Eif2b4 protein_coding protein_coding MGP_C3HHeJ_T0070476.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29381263 29388696 - MGP_C3HHeJ_P0070476 Eif2b4 protein_coding protein_coding MGP_C3HHeJ_T0070477.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29381264 29388702 - MGP_C3HHeJ_P0070477 Eif2b4 protein_coding protein_coding MGP_C3HHeJ_T0070478.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29381265 29387328 - MGP_C3HHeJ_P0070478 Eif2b4 protein_coding protein_coding MGP_C3HHeJ_T0070479.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29385082 29386542 - Eif2b4 protein_coding retained_intron MGP_C3HHeJ_T0070480.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29385249 29385597 - MGP_C3HHeJ_P0070480 Eif2b4 protein_coding protein_coding MGP_C3HHeJ_T0070481.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29385269 29386832 - MGP_C3HHeJ_P0070481 Eif2b4 protein_coding protein_coding MGP_C3HHeJ_T0070482.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29386078 29386880 - MGP_C3HHeJ_P0070482 Eif2b4 protein_coding protein_coding MGP_C3HHeJ_T0070483.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29386880 29388827 - Eif2b4 protein_coding processed_transcript MGP_C3HHeJ_T0070484.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29387010 29388687 - Eif2b4 protein_coding retained_intron MGP_C3HHeJ_T0070485.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29387398 29389106 - MGP_C3HHeJ_P0070485 Eif2b4 protein_coding protein_coding MGP_C3HHeJ_T0008284.1 MGP_C3HHeJ_G0006722.1 mouse_genomes_project 5 128411641 128422699 + Gm42485 lincRNA lincRNA MGP_C3HHeJ_T0008224.1 MGP_C3HHeJ_G0006681.1 mouse_genomes_project 5 116092417 116095611 - lincRNA lincRNA MGP_C3HHeJ_T0001828.1 MGP_C3HHeJ_G0001751.1 mouse_genomes_project 5 135462707 135464343 - TEC TEC MGP_C3HHeJ_T0099435.1 MGP_C3HHeJ_G0037629.1 mouse_genomes_project 5 37214035 37214142 - Gm22779 snRNA snRNA MGP_C3HHeJ_T0098296.1 MGP_C3HHeJ_G0036508.1 mouse_genomes_project 5 126530545 126530682 + Gm24682 scaRNA scaRNA MGP_C3HHeJ_T0007955.1 MGP_C3HHeJ_G0006491.1 mouse_genomes_project 5 4795358 5082054 - lincRNA lincRNA MGP_C3HHeJ_T0070084.1 MGP_C3HHeJ_G0029039.1 mouse_genomes_project 5 22364439 22369729 - MGP_C3HHeJ_P0070084 Cdk5 protein_coding protein_coding MGP_C3HHeJ_T0070085.1 MGP_C3HHeJ_G0029039.1 mouse_genomes_project 5 22365574 22369684 - MGP_C3HHeJ_P0070085 Cdk5 protein_coding protein_coding MGP_C3HHeJ_T0070086.1 MGP_C3HHeJ_G0029039.1 mouse_genomes_project 5 22367197 22368894 - Cdk5 protein_coding retained_intron MGP_C3HHeJ_T0008096.1 MGP_C3HHeJ_G0006593.1 mouse_genomes_project 5 76526817 76556240 + lincRNA lincRNA MGP_C3HHeJ_T0008097.1 MGP_C3HHeJ_G0006593.1 mouse_genomes_project 5 76527123 76556196 + lincRNA lincRNA MGP_C3HHeJ_T0072171.1 MGP_C3HHeJ_G0029417.1 mouse_genomes_project 5 90936496 90949742 - MGP_C3HHeJ_P0072171 Cox18 protein_coding protein_coding MGP_C3HHeJ_T0072172.1 MGP_C3HHeJ_G0029417.1 mouse_genomes_project 5 90936496 90949713 - MGP_C3HHeJ_P0072172 Cox18 protein_coding protein_coding MGP_C3HHeJ_T0072173.1 MGP_C3HHeJ_G0029417.1 mouse_genomes_project 5 90936499 90937354 - Cox18 protein_coding processed_transcript MGP_C3HHeJ_T0072174.1 MGP_C3HHeJ_G0029417.1 mouse_genomes_project 5 90936499 90943580 - Cox18 protein_coding retained_intron MGP_C3HHeJ_T0072175.1 MGP_C3HHeJ_G0029417.1 mouse_genomes_project 5 90936502 90937795 - Cox18 protein_coding retained_intron MGP_C3HHeJ_T0072176.1 MGP_C3HHeJ_G0029417.1 mouse_genomes_project 5 90943234 90945493 - Cox18 protein_coding retained_intron MGP_C3HHeJ_T0072177.1 MGP_C3HHeJ_G0029417.1 mouse_genomes_project 5 90944635 90949680 - MGP_C3HHeJ_P0072177 Cox18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014958.1 MGP_C3HHeJ_G0013062.1 mouse_genomes_project 5 119030075 119030732 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074931.1 MGP_C3HHeJ_G0029939.1 mouse_genomes_project 5 141454704 141488701 + MGP_C3HHeJ_P0074931 protein_coding unknown_likely_coding MGP_C3HHeJ_T0074932.1 MGP_C3HHeJ_G0029939.1 mouse_genomes_project 5 141461639 141464811 + protein_coding retained_intron MGP_C3HHeJ_T0074933.1 MGP_C3HHeJ_G0029939.1 mouse_genomes_project 5 141468115 141469817 + protein_coding retained_intron MGP_C3HHeJ_T0074934.1 MGP_C3HHeJ_G0029939.1 mouse_genomes_project 5 141468344 141480366 + protein_coding processed_transcript MGP_C3HHeJ_T0074935.1 MGP_C3HHeJ_G0029939.1 mouse_genomes_project 5 141479582 141488403 + MGP_C3HHeJ_P0074935 protein_coding protein_coding MGP_C3HHeJ_T0099439.1 MGP_C3HHeJ_G0037633.1 mouse_genomes_project 5 59858645 59858753 - Gm23331 snRNA snRNA MGP_C3HHeJ_T0014840.1 MGP_C3HHeJ_G0012944.1 mouse_genomes_project 5 72924498 72924757 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014734.1 MGP_C3HHeJ_G0012838.1 mouse_genomes_project 5 23533634 23533908 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073612.1 MGP_C3HHeJ_G0029719.1 mouse_genomes_project 5 124147718 124160000 - MGP_C3HHeJ_P0073612 Trafd1 protein_coding protein_coding MGP_C3HHeJ_T0073613.1 MGP_C3HHeJ_G0029719.1 mouse_genomes_project 5 124147722 124149129 - Trafd1 protein_coding retained_intron MGP_C3HHeJ_T0073614.1 MGP_C3HHeJ_G0029719.1 mouse_genomes_project 5 124147722 124154686 - MGP_C3HHeJ_P0073614 Trafd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073615.1 MGP_C3HHeJ_G0029719.1 mouse_genomes_project 5 124147729 124149472 - MGP_C3HHeJ_P0073615 Trafd1 protein_coding protein_coding MGP_C3HHeJ_T0073616.1 MGP_C3HHeJ_G0029719.1 mouse_genomes_project 5 124154493 124161273 - MGP_C3HHeJ_P0073616 Trafd1 protein_coding protein_coding MGP_C3HHeJ_T0073617.1 MGP_C3HHeJ_G0029719.1 mouse_genomes_project 5 124154739 124161390 - MGP_C3HHeJ_P0073617 Trafd1 protein_coding protein_coding MGP_C3HHeJ_T0073618.1 MGP_C3HHeJ_G0029719.1 mouse_genomes_project 5 124155459 124161442 - MGP_C3HHeJ_P0073618 Trafd1 protein_coding protein_coding MGP_C3HHeJ_T0073619.1 MGP_C3HHeJ_G0029719.1 mouse_genomes_project 5 124160023 124161224 - Trafd1 protein_coding processed_transcript MGP_C3HHeJ_T0014762.1 MGP_C3HHeJ_G0012866.1 mouse_genomes_project 5 32164980 32165292 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072496.1 MGP_C3HHeJ_G0029489.1 mouse_genomes_project 5 101968666 102009616 - MGP_C3HHeJ_P0072496 Hpse protein_coding protein_coding MGP_C3HHeJ_T0072497.1 MGP_C3HHeJ_G0029489.1 mouse_genomes_project 5 101973738 102009605 - MGP_C3HHeJ_P0072497 Hpse protein_coding protein_coding MGP_C3HHeJ_T0074301.1 MGP_C3HHeJ_G0029828.1 mouse_genomes_project 5 133072760 133076842 + protein_coding retained_intron MGP_C3HHeJ_T0070353.1 MGP_C3HHeJ_G0029094.1 mouse_genomes_project 5 28977567 29031241 + MGP_C3HHeJ_P0070353 Mapre3 protein_coding protein_coding MGP_C3HHeJ_T0070354.1 MGP_C3HHeJ_G0029094.1 mouse_genomes_project 5 28977659 29031194 + Mapre3 protein_coding retained_intron MGP_C3HHeJ_T0070355.1 MGP_C3HHeJ_G0029094.1 mouse_genomes_project 5 28977680 29031194 + MGP_C3HHeJ_P0070355 Mapre3 protein_coding protein_coding MGP_C3HHeJ_T0070356.1 MGP_C3HHeJ_G0029094.1 mouse_genomes_project 5 28977686 29027712 + Mapre3 protein_coding retained_intron MGP_C3HHeJ_T0070357.1 MGP_C3HHeJ_G0029094.1 mouse_genomes_project 5 29018933 29028493 + MGP_C3HHeJ_P0070357 Mapre3 protein_coding protein_coding MGP_C3HHeJ_T0070358.1 MGP_C3HHeJ_G0029094.1 mouse_genomes_project 5 29029656 29030390 + Mapre3 protein_coding retained_intron MGP_C3HHeJ_T0072385.1 MGP_C3HHeJ_G0029465.1 mouse_genomes_project 5 97920276 97947046 + MGP_C3HHeJ_P0072385 Anxa3 protein_coding protein_coding MGP_C3HHeJ_T0072386.1 MGP_C3HHeJ_G0029465.1 mouse_genomes_project 5 97920322 97976538 + MGP_C3HHeJ_P0072386 Anxa3 protein_coding protein_coding MGP_C3HHeJ_T0072387.1 MGP_C3HHeJ_G0029465.1 mouse_genomes_project 5 97920378 97955962 + MGP_C3HHeJ_P0072387 Anxa3 protein_coding protein_coding MGP_C3HHeJ_T0072388.1 MGP_C3HHeJ_G0029465.1 mouse_genomes_project 5 97920437 97956903 + MGP_C3HHeJ_P0072388 Anxa3 protein_coding protein_coding MGP_C3HHeJ_T0072389.1 MGP_C3HHeJ_G0029465.1 mouse_genomes_project 5 97941779 97965800 + Anxa3 protein_coding retained_intron MGP_C3HHeJ_T0072390.1 MGP_C3HHeJ_G0029465.1 mouse_genomes_project 5 97946937 97968916 + Anxa3 protein_coding retained_intron MGP_C3HHeJ_T0072391.1 MGP_C3HHeJ_G0029465.1 mouse_genomes_project 5 97958924 97961439 + Anxa3 protein_coding retained_intron MGP_C3HHeJ_T0072392.1 MGP_C3HHeJ_G0029465.1 mouse_genomes_project 5 97961033 97976254 + Anxa3 protein_coding retained_intron MGP_C3HHeJ_T0072393.1 MGP_C3HHeJ_G0029465.1 mouse_genomes_project 5 97972567 97976432 + MGP_C3HHeJ_P0072393 Anxa3 protein_coding protein_coding MGP_C3HHeJ_T0099417.1 MGP_C3HHeJ_G0037611.1 mouse_genomes_project 5 6349408 6349575 + Gm24666 snRNA snRNA MGP_C3HHeJ_T0008299.1 MGP_C3HHeJ_G0006730.1 mouse_genomes_project 5 129962063 129995376 + Gm42954 lincRNA lincRNA MGP_C3HHeJ_T0100693.1 MGP_C3HHeJ_G0038887.1 mouse_genomes_project 5 38056703 38056832 - Gm25377 snoRNA snoRNA MGP_C3HHeJ_T0008065.1 MGP_C3HHeJ_G0006570.1 mouse_genomes_project 5 63958955 63972093 - 1700027F09Rik lincRNA lincRNA MGP_C3HHeJ_T0001626.1 MGP_C3HHeJ_G0001551.1 mouse_genomes_project 5 66610936 66613093 + TEC TEC MGP_C3HHeJ_T0014875.1 MGP_C3HHeJ_G0012979.1 mouse_genomes_project 5 88867053 88867432 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074954.1 MGP_C3HHeJ_G0029947.1 mouse_genomes_project 5 141742589 141748447 + MGP_C3HHeJ_P0074954 protein_coding protein_coding MGP_C3HHeJ_T0014827.1 MGP_C3HHeJ_G0012931.1 mouse_genomes_project 5 65803757 65807195 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074662.1 MGP_C3HHeJ_G0029892.1 mouse_genomes_project 5 139584296 139594060 + Upk3bl protein_coding processed_transcript MGP_C3HHeJ_T0074663.1 MGP_C3HHeJ_G0029892.1 mouse_genomes_project 5 139586995 139594060 + MGP_C3HHeJ_P0074663 Upk3bl protein_coding protein_coding MGP_C3HHeJ_T0074664.1 MGP_C3HHeJ_G0029892.1 mouse_genomes_project 5 139587071 139594055 + MGP_C3HHeJ_P0074664 Upk3bl protein_coding protein_coding MGP_C3HHeJ_T0074665.1 MGP_C3HHeJ_G0029892.1 mouse_genomes_project 5 139587071 139594062 + MGP_C3HHeJ_P0074665 Upk3bl protein_coding protein_coding MGP_C3HHeJ_T0074666.1 MGP_C3HHeJ_G0029892.1 mouse_genomes_project 5 139589850 139594046 + Upk3bl protein_coding processed_transcript MGP_C3HHeJ_T0074667.1 MGP_C3HHeJ_G0029892.1 mouse_genomes_project 5 139589923 139594048 + MGP_C3HHeJ_P0074667 Upk3bl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001762.1 MGP_C3HHeJ_G0001686.1 mouse_genomes_project 5 123376602 123377875 + TEC TEC MGP_C3HHeJ_T0069962.1 MGP_C3HHeJ_G0029017.1 mouse_genomes_project 5 19383015 19426014 - MGP_C3HHeJ_P0069962 Napepld protein_coding protein_coding MGP_C3HHeJ_T0069963.1 MGP_C3HHeJ_G0029017.1 mouse_genomes_project 5 19383017 19426016 - MGP_C3HHeJ_P0069963 Napepld protein_coding protein_coding MGP_C3HHeJ_T0008175.1 MGP_C3HHeJ_G0006653.1 mouse_genomes_project 5 108225430 108225943 + Gm29464 lincRNA lincRNA MGP_C3HHeJ_T0014772.1 MGP_C3HHeJ_G0012876.1 mouse_genomes_project 5 37081915 37082314 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008298.1 MGP_C3HHeJ_G0006729.1 mouse_genomes_project 5 129912682 129930851 - Gm42953 lincRNA lincRNA MGP_C3HHeJ_T0100692.1 MGP_C3HHeJ_G0038886.1 mouse_genomes_project 5 35129550 35129674 + snoRNA snoRNA MGP_C3HHeJ_T0001597.1 MGP_C3HHeJ_G0001522.1 mouse_genomes_project 5 64980678 64982154 - TEC TEC MGP_C3HHeJ_T0070176.1 MGP_C3HHeJ_G0029056.1 mouse_genomes_project 5 23208156 23212169 + Galnt11 protein_coding processed_transcript MGP_C3HHeJ_T0070178.1 MGP_C3HHeJ_G0029056.1 mouse_genomes_project 5 23209131 23243382 + MGP_C3HHeJ_P0070178 Galnt11 protein_coding protein_coding MGP_C3HHeJ_T0070179.1 MGP_C3HHeJ_G0029056.1 mouse_genomes_project 5 23224009 23243381 + MGP_C3HHeJ_P0070179 Galnt11 protein_coding protein_coding MGP_C3HHeJ_T0070180.1 MGP_C3HHeJ_G0029056.1 mouse_genomes_project 5 23224419 23226397 + MGP_C3HHeJ_P0070180 Galnt11 protein_coding protein_coding MGP_C3HHeJ_T0070181.1 MGP_C3HHeJ_G0029056.1 mouse_genomes_project 5 23224999 23243382 + MGP_C3HHeJ_P0070181 Galnt11 protein_coding protein_coding MGP_C3HHeJ_T0073386.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 117988953 118076606 - MGP_C3HHeJ_P0073386 Ccdc64 protein_coding unknown_likely_coding MGP_C3HHeJ_T0073387.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 117988960 117990580 - Ccdc64 protein_coding retained_intron MGP_C3HHeJ_T0073388.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 117988960 118076737 - MGP_C3HHeJ_P0073388 Ccdc64 protein_coding protein_coding MGP_C3HHeJ_T0073389.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 117988962 117993772 - MGP_C3HHeJ_P0073389 Ccdc64 protein_coding protein_coding MGP_C3HHeJ_T0073390.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 117988965 117993767 - MGP_C3HHeJ_P0073390 Ccdc64 protein_coding protein_coding MGP_C3HHeJ_T0073391.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 117990052 117993772 - MGP_C3HHeJ_P0073391 Ccdc64 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073392.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 117992604 118011022 - MGP_C3HHeJ_P0073392 Ccdc64 protein_coding protein_coding MGP_C3HHeJ_T0073393.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 118001000 118011288 - Ccdc64 protein_coding retained_intron MGP_C3HHeJ_T0073394.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 118008004 118061675 - Ccdc64 protein_coding processed_transcript MGP_C3HHeJ_T0073395.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 118010942 118076483 - MGP_C3HHeJ_P0073395 Ccdc64 protein_coding protein_coding MGP_C3HHeJ_T0073396.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 118069579 118076544 - Ccdc64 protein_coding retained_intron MGP_C3HHeJ_T0008266.1 MGP_C3HHeJ_G0006712.1 mouse_genomes_project 5 123269104 123269814 + Gm15749 lincRNA lincRNA MGP_C3HHeJ_T0014799.1 MGP_C3HHeJ_G0012903.1 mouse_genomes_project 5 54759032 54759738 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070881.1 MGP_C3HHeJ_G0029171.1 mouse_genomes_project 5 33335248 33348798 + Msantd1 protein_coding processed_transcript MGP_C3HHeJ_T0070882.1 MGP_C3HHeJ_G0029171.1 mouse_genomes_project 5 33346069 33354547 + MGP_C3HHeJ_P0070882 Msantd1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0070883.1 MGP_C3HHeJ_G0029171.1 mouse_genomes_project 5 33346896 33354822 + MGP_C3HHeJ_P0070883 Msantd1 protein_coding protein_coding MGP_C3HHeJ_T0070884.1 MGP_C3HHeJ_G0029171.1 mouse_genomes_project 5 33348520 33354673 + MGP_C3HHeJ_P0070884 Msantd1 protein_coding protein_coding MGP_C3HHeJ_T0070126.1 MGP_C3HHeJ_G0029044.1 mouse_genomes_project 5 22455426 22483568 - MGP_C3HHeJ_P0070126 Gbx1 protein_coding protein_coding MGP_C3HHeJ_T0074824.1 MGP_C3HHeJ_G0029920.1 mouse_genomes_project 5 140993731 141104937 - MGP_C3HHeJ_P0074824 Zan protein_coding protein_coding MGP_C3HHeJ_T0074825.1 MGP_C3HHeJ_G0029920.1 mouse_genomes_project 5 140993731 141104468 - MGP_C3HHeJ_P0074825 Zan protein_coding protein_coding MGP_C3HHeJ_T0074826.1 MGP_C3HHeJ_G0029920.1 mouse_genomes_project 5 141013637 141016832 - Zan protein_coding retained_intron MGP_C3HHeJ_T0074827.1 MGP_C3HHeJ_G0029920.1 mouse_genomes_project 5 141026706 141028607 - MGP_C3HHeJ_P0074827 Zan protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074828.1 MGP_C3HHeJ_G0029920.1 mouse_genomes_project 5 141056121 141075274 - Zan protein_coding retained_intron MGP_C3HHeJ_T0014770.1 MGP_C3HHeJ_G0012874.1 mouse_genomes_project 5 35888511 35888991 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011730.1 MGP_C3HHeJ_G0009844.1 mouse_genomes_project 5 72005182 72032274 + MGP_C3HHeJ_P0011730 Atp10d polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0011731.1 MGP_C3HHeJ_G0009844.1 mouse_genomes_project 5 72005182 72103921 + MGP_C3HHeJ_P0011731 Atp10d polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0011732.1 MGP_C3HHeJ_G0009844.1 mouse_genomes_project 5 72005206 72031411 + Atp10d polymorphic_pseudogene retained_intron MGP_C3HHeJ_T0011733.1 MGP_C3HHeJ_G0009844.1 mouse_genomes_project 5 72069600 72103921 + Atp10d polymorphic_pseudogene processed_transcript MGP_C3HHeJ_T0011734.1 MGP_C3HHeJ_G0009844.1 mouse_genomes_project 5 72085034 72103908 + Atp10d polymorphic_pseudogene processed_transcript MGP_C3HHeJ_T0011735.1 MGP_C3HHeJ_G0009844.1 mouse_genomes_project 5 72085034 72103907 + MGP_C3HHeJ_P0011735 Atp10d polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0070393.1 MGP_C3HHeJ_G0029100.1 mouse_genomes_project 5 29104638 29117925 - MGP_C3HHeJ_P0070393 Cgref1 protein_coding protein_coding MGP_C3HHeJ_T0070394.1 MGP_C3HHeJ_G0029100.1 mouse_genomes_project 5 29106713 29117740 - Cgref1 protein_coding retained_intron MGP_C3HHeJ_T0101425.1 MGP_C3HHeJ_G0039454.1 mouse_genomes_project 5 74340088 74342530 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0017949.1 MGP_C3HHeJ_G0015370.1 mouse_genomes_project 5 112104541 112114082 - Gm15787 processed_transcript antisense MGP_C3HHeJ_T0017950.1 MGP_C3HHeJ_G0015370.1 mouse_genomes_project 5 112105153 112130212 - Gm15787 processed_transcript processed_transcript MGP_C3HHeJ_T0017951.1 MGP_C3HHeJ_G0015370.1 mouse_genomes_project 5 112114092 112130151 - Gm15787 processed_transcript antisense MGP_C3HHeJ_T0017952.1 MGP_C3HHeJ_G0015370.1 mouse_genomes_project 5 112120364 112130212 - Gm15787 processed_transcript antisense MGP_C3HHeJ_T0017953.1 MGP_C3HHeJ_G0015370.1 mouse_genomes_project 5 112121051 112130174 - Gm15787 processed_transcript antisense MGP_C3HHeJ_T0017954.1 MGP_C3HHeJ_G0015370.1 mouse_genomes_project 5 112121113 112122753 - Gm15787 processed_transcript antisense MGP_C3HHeJ_T0017955.1 MGP_C3HHeJ_G0015370.1 mouse_genomes_project 5 112122454 112130212 - Gm15787 processed_transcript antisense MGP_C3HHeJ_T0017956.1 MGP_C3HHeJ_G0015370.1 mouse_genomes_project 5 112122977 112130148 - Gm15787 processed_transcript antisense MGP_C3HHeJ_T0070918.1 MGP_C3HHeJ_G0029176.1 mouse_genomes_project 5 33730442 33733888 + MGP_C3HHeJ_P0070918 Adra2c protein_coding protein_coding MGP_C3HHeJ_T0073144.1 MGP_C3HHeJ_G0029624.1 mouse_genomes_project 5 116177742 116204782 + MGP_C3HHeJ_P0073144 Dao protein_coding protein_coding MGP_C3HHeJ_T0073145.1 MGP_C3HHeJ_G0029624.1 mouse_genomes_project 5 116177923 116204549 + MGP_C3HHeJ_P0073145 Dao protein_coding protein_coding MGP_C3HHeJ_T0073146.1 MGP_C3HHeJ_G0029624.1 mouse_genomes_project 5 116178848 116204549 + MGP_C3HHeJ_P0073146 Dao protein_coding protein_coding MGP_C3HHeJ_T0073147.1 MGP_C3HHeJ_G0029624.1 mouse_genomes_project 5 116185806 116194505 + MGP_C3HHeJ_P0073147 Dao protein_coding protein_coding MGP_C3HHeJ_T0073148.1 MGP_C3HHeJ_G0029624.1 mouse_genomes_project 5 116196099 116199149 + Dao protein_coding retained_intron MGP_C3HHeJ_T0008128.1 MGP_C3HHeJ_G0006621.1 mouse_genomes_project 5 98346073 98358454 + Gm2861 lincRNA lincRNA MGP_C3HHeJ_T0014704.1 MGP_C3HHeJ_G0012808.1 mouse_genomes_project 5 18922261 18922513 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014906.1 MGP_C3HHeJ_G0013010.1 mouse_genomes_project 5 103495166 103497342 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004727.1 MGP_C3HHeJ_G0004072.1 mouse_genomes_project 5 119748720 119749468 - Gm10399 antisense antisense MGP_C3HHeJ_T0004728.1 MGP_C3HHeJ_G0004072.1 mouse_genomes_project 5 119748968 119749466 - Gm10399 antisense antisense MGP_C3HHeJ_T0069708.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2583356 2606936 - MGP_C3HHeJ_P0069708 Gtpbp10 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069709.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2587081 2606984 - MGP_C3HHeJ_P0069709 Gtpbp10 protein_coding protein_coding MGP_C3HHeJ_T0069710.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2589580 2591870 - Gtpbp10 protein_coding retained_intron MGP_C3HHeJ_T0069711.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2589600 2591125 - Gtpbp10 protein_coding retained_intron MGP_C3HHeJ_T0069712.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2590017 2604713 - MGP_C3HHeJ_P0069712 Gtpbp10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069713.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2591744 2606932 - MGP_C3HHeJ_P0069713 Gtpbp10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069714.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2591788 2603225 - Gtpbp10 protein_coding retained_intron MGP_C3HHeJ_T0069715.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2591825 2594948 - Gtpbp10 protein_coding retained_intron MGP_C3HHeJ_T0069716.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2594029 2606953 - MGP_C3HHeJ_P0069716 Gtpbp10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069717.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2606339 2606987 - MGP_C3HHeJ_P0069717 Gtpbp10 protein_coding protein_coding MGP_C3HHeJ_T0071528.1 MGP_C3HHeJ_G0029285.1 mouse_genomes_project 5 65529964 65563901 + MGP_C3HHeJ_P0071528 Chrna9 protein_coding protein_coding MGP_C3HHeJ_T0071529.1 MGP_C3HHeJ_G0029285.1 mouse_genomes_project 5 65529971 65565979 + MGP_C3HHeJ_P0071529 Chrna9 protein_coding protein_coding MGP_C3HHeJ_T0071530.1 MGP_C3HHeJ_G0029285.1 mouse_genomes_project 5 65529991 65530958 + Chrna9 protein_coding retained_intron MGP_C3HHeJ_T0071531.1 MGP_C3HHeJ_G0029285.1 mouse_genomes_project 5 65530016 65539246 + Chrna9 protein_coding processed_transcript MGP_C3HHeJ_T0071532.1 MGP_C3HHeJ_G0029285.1 mouse_genomes_project 5 65530018 65539262 + Chrna9 protein_coding processed_transcript MGP_C3HHeJ_T0071533.1 MGP_C3HHeJ_G0029285.1 mouse_genomes_project 5 65561995 65572087 + MGP_C3HHeJ_P0071533 Chrna9 protein_coding protein_coding MGP_C3HHeJ_T0071534.1 MGP_C3HHeJ_G0029285.1 mouse_genomes_project 5 65570656 65571901 + Chrna9 protein_coding processed_transcript MGP_C3HHeJ_T0014951.1 MGP_C3HHeJ_G0013055.1 mouse_genomes_project 5 117082618 117083261 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001755.1 MGP_C3HHeJ_G0001679.1 mouse_genomes_project 5 121158819 121164755 + TEC TEC MGP_C3HHeJ_T0001425.1 MGP_C3HHeJ_G0001355.1 mouse_genomes_project 5 12062346 12066904 + TEC TEC MGP_C3HHeJ_T0008054.1 MGP_C3HHeJ_G0006560.1 mouse_genomes_project 5 52437873 52449921 - Gm42745 lincRNA lincRNA MGP_C3HHeJ_T0099472.1 MGP_C3HHeJ_G0037666.1 mouse_genomes_project 5 108977713 108977815 + Gm22557 snRNA snRNA MGP_C3HHeJ_T0004744.1 MGP_C3HHeJ_G0004082.1 mouse_genomes_project 5 124565041 124575508 - Gm16552 antisense antisense MGP_C3HHeJ_T0008333.1 MGP_C3HHeJ_G0006751.1 mouse_genomes_project 5 140881412 140897076 - Gm42456 lincRNA lincRNA MGP_C3HHeJ_T0004658.1 MGP_C3HHeJ_G0004025.1 mouse_genomes_project 5 89199294 89199600 + antisense antisense MGP_C3HHeJ_T0098487.1 MGP_C3HHeJ_G0036692.1 mouse_genomes_project 5 2343717 2346318 - Gm43728 sense_intronic sense_intronic MGP_C3HHeJ_T0072345.1 MGP_C3HHeJ_G0029457.1 mouse_genomes_project 5 93930596 94011955 + MGP_C3HHeJ_P0072345 Sept11 protein_coding protein_coding MGP_C3HHeJ_T0072346.1 MGP_C3HHeJ_G0029457.1 mouse_genomes_project 5 93930597 93931237 + Sept11 protein_coding retained_intron MGP_C3HHeJ_T0072347.1 MGP_C3HHeJ_G0029457.1 mouse_genomes_project 5 93930597 94006972 + MGP_C3HHeJ_P0072347 Sept11 protein_coding protein_coding MGP_C3HHeJ_T0072348.1 MGP_C3HHeJ_G0029457.1 mouse_genomes_project 5 93930607 93998456 + MGP_C3HHeJ_P0072348 Sept11 protein_coding protein_coding MGP_C3HHeJ_T0072349.1 MGP_C3HHeJ_G0029457.1 mouse_genomes_project 5 93930610 94013433 + MGP_C3HHeJ_P0072349 Sept11 protein_coding protein_coding MGP_C3HHeJ_T0072350.1 MGP_C3HHeJ_G0029457.1 mouse_genomes_project 5 93930685 94013443 + MGP_C3HHeJ_P0072350 Sept11 protein_coding protein_coding MGP_C3HHeJ_T0072351.1 MGP_C3HHeJ_G0029457.1 mouse_genomes_project 5 93930695 93985628 + MGP_C3HHeJ_P0072351 Sept11 protein_coding protein_coding MGP_C3HHeJ_T0072352.1 MGP_C3HHeJ_G0029457.1 mouse_genomes_project 5 93930730 94013073 + MGP_C3HHeJ_P0072352 Sept11 protein_coding protein_coding MGP_C3HHeJ_T0072353.1 MGP_C3HHeJ_G0029457.1 mouse_genomes_project 5 93985587 93994867 + Sept11 protein_coding retained_intron MGP_C3HHeJ_T0075563.1 MGP_C3HHeJ_G0030084.1 mouse_genomes_project 5 151950676 151958093 - MGP_C3HHeJ_P0075563 Urad protein_coding protein_coding MGP_C3HHeJ_T0073551.1 MGP_C3HHeJ_G0029702.1 mouse_genomes_project 5 123206485 123224372 + MGP_C3HHeJ_P0073551 Iqcd protein_coding protein_coding MGP_C3HHeJ_T0073552.1 MGP_C3HHeJ_G0029702.1 mouse_genomes_project 5 123206492 123224376 + MGP_C3HHeJ_P0073552 Iqcd protein_coding protein_coding MGP_C3HHeJ_T0008245.1 MGP_C3HHeJ_G0006695.1 mouse_genomes_project 5 119740607 119744702 - BC051077 lincRNA lincRNA MGP_C3HHeJ_T0001478.1 MGP_C3HHeJ_G0001405.1 mouse_genomes_project 5 35105587 35108144 + TEC TEC MGP_C3HHeJ_T0100709.1 MGP_C3HHeJ_G0038903.1 mouse_genomes_project 5 78950184 78950320 + Gm25756 snoRNA snoRNA MGP_C3HHeJ_T0017960.1 MGP_C3HHeJ_G0015373.1 mouse_genomes_project 5 126411716 126414428 + Gm43813 processed_transcript sense_intronic MGP_C3HHeJ_T0017961.1 MGP_C3HHeJ_G0015373.1 mouse_genomes_project 5 126411716 126418864 + Gm43813 processed_transcript TEC MGP_C3HHeJ_T0008394.1 MGP_C3HHeJ_G0006799.1 mouse_genomes_project 5 155459230 155461709 - Gm43598 lincRNA lincRNA MGP_C3HHeJ_T0101228.1 MGP_C3HHeJ_G0039359.1 mouse_genomes_project 5 74295927 74296384 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0001575.1 MGP_C3HHeJ_G0001501.1 mouse_genomes_project 5 57198063 57199418 + TEC TEC MGP_C3HHeJ_T0014682.1 MGP_C3HHeJ_G0012786.1 mouse_genomes_project 5 7933124 7933593 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017924.1 MGP_C3HHeJ_G0015360.1 mouse_genomes_project 5 56841428 56979939 - 4932441J04Rik processed_transcript antisense MGP_C3HHeJ_T0017925.1 MGP_C3HHeJ_G0015360.1 mouse_genomes_project 5 56978157 56982221 - 4932441J04Rik processed_transcript retained_intron MGP_C3HHeJ_T0070449.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29331335 29345793 - MGP_C3HHeJ_P0070449 Mpv17 protein_coding protein_coding MGP_C3HHeJ_T0070450.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29331344 29345764 - MGP_C3HHeJ_P0070450 Mpv17 protein_coding protein_coding MGP_C3HHeJ_T0070451.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29331777 29345740 - MGP_C3HHeJ_P0070451 Mpv17 protein_coding protein_coding MGP_C3HHeJ_T0070452.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29332139 29345770 - MGP_C3HHeJ_P0070452 Mpv17 protein_coding protein_coding MGP_C3HHeJ_T0070453.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29332197 29345694 - MGP_C3HHeJ_P0070453 Mpv17 protein_coding protein_coding MGP_C3HHeJ_T0070454.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29332222 29345734 - MGP_C3HHeJ_P0070454 Mpv17 protein_coding protein_coding MGP_C3HHeJ_T0070455.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29332290 29336518 - MGP_C3HHeJ_P0070455 Mpv17 protein_coding protein_coding MGP_C3HHeJ_T0070456.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29332392 29336538 - Mpv17 protein_coding retained_intron MGP_C3HHeJ_T0070457.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29334551 29345760 - Mpv17 protein_coding retained_intron MGP_C3HHeJ_T0070458.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29334751 29345763 - MGP_C3HHeJ_P0070458 Mpv17 protein_coding protein_coding MGP_C3HHeJ_T0070460.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29335517 29345760 - Mpv17 protein_coding retained_intron MGP_C3HHeJ_T0070461.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29335753 29345284 - Mpv17 protein_coding retained_intron MGP_C3HHeJ_T0001519.1 MGP_C3HHeJ_G0001446.1 mouse_genomes_project 5 47013490 47015103 + TEC TEC MGP_C3HHeJ_T0015023.1 MGP_C3HHeJ_G0013127.1 mouse_genomes_project 5 150775557 150776429 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071152.1 MGP_C3HHeJ_G0029221.1 mouse_genomes_project 5 41825794 41885188 + MGP_C3HHeJ_P0071152 Cpeb2 protein_coding protein_coding MGP_C3HHeJ_T0071153.1 MGP_C3HHeJ_G0029221.1 mouse_genomes_project 5 41826087 41885193 + MGP_C3HHeJ_P0071153 Cpeb2 protein_coding protein_coding MGP_C3HHeJ_T0071154.1 MGP_C3HHeJ_G0029221.1 mouse_genomes_project 5 41826551 41830520 + Cpeb2 protein_coding retained_intron MGP_C3HHeJ_T0071155.1 MGP_C3HHeJ_G0029221.1 mouse_genomes_project 5 41827638 41876674 + MGP_C3HHeJ_P0071155 Cpeb2 protein_coding protein_coding MGP_C3HHeJ_T0071156.1 MGP_C3HHeJ_G0029221.1 mouse_genomes_project 5 41827650 41828486 + Cpeb2 protein_coding processed_transcript MGP_C3HHeJ_T0071157.1 MGP_C3HHeJ_G0029221.1 mouse_genomes_project 5 41829915 41840110 + Cpeb2 protein_coding processed_transcript MGP_C3HHeJ_T0001545.1 MGP_C3HHeJ_G0001471.1 mouse_genomes_project 5 48336279 48342538 - TEC TEC MGP_C3HHeJ_T0071108.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36855111 36989811 - MGP_C3HHeJ_P0071108 Slc2a9 protein_coding protein_coding MGP_C3HHeJ_T0071109.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36855111 36985633 - MGP_C3HHeJ_P0071109 Slc2a9 protein_coding protein_coding MGP_C3HHeJ_T0071110.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36855112 36998414 - MGP_C3HHeJ_P0071110 Slc2a9 protein_coding protein_coding MGP_C3HHeJ_T0071111.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36855144 37008574 - MGP_C3HHeJ_P0071111 Slc2a9 protein_coding protein_coding MGP_C3HHeJ_T0071112.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36856034 36985485 - MGP_C3HHeJ_P0071112 Slc2a9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071113.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36856034 37009523 - MGP_C3HHeJ_P0071113 Slc2a9 protein_coding protein_coding MGP_C3HHeJ_T0071114.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36857478 36985458 - MGP_C3HHeJ_P0071114 Slc2a9 protein_coding protein_coding MGP_C3HHeJ_T0071115.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36888030 36985509 - MGP_C3HHeJ_P0071115 Slc2a9 protein_coding protein_coding MGP_C3HHeJ_T0071116.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36916865 36946218 - Slc2a9 protein_coding processed_transcript MGP_C3HHeJ_T0071117.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36946038 37008501 - MGP_C3HHeJ_P0071117 Slc2a9 protein_coding protein_coding MGP_C3HHeJ_T0071118.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36980475 37008583 - Slc2a9 protein_coding processed_transcript MGP_C3HHeJ_T0071119.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36989417 36998387 - Slc2a9 protein_coding retained_intron MGP_C3HHeJ_T0069923.1 MGP_C3HHeJ_G0029009.1 mouse_genomes_project 5 18671969 18743125 - MGP_C3HHeJ_P0069923 Ptpn12 protein_coding protein_coding MGP_C3HHeJ_T0069924.1 MGP_C3HHeJ_G0029009.1 mouse_genomes_project 5 18671970 18674586 - Ptpn12 protein_coding retained_intron MGP_C3HHeJ_T0069925.1 MGP_C3HHeJ_G0029009.1 mouse_genomes_project 5 18683547 18686495 - Ptpn12 protein_coding retained_intron MGP_C3HHeJ_T0069926.1 MGP_C3HHeJ_G0029009.1 mouse_genomes_project 5 18683721 18695718 - Ptpn12 protein_coding retained_intron MGP_C3HHeJ_T0069927.1 MGP_C3HHeJ_G0029009.1 mouse_genomes_project 5 18686371 18742967 - MGP_C3HHeJ_P0069927 Ptpn12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069928.1 MGP_C3HHeJ_G0029009.1 mouse_genomes_project 5 18690445 18743111 - MGP_C3HHeJ_P0069928 Ptpn12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069929.1 MGP_C3HHeJ_G0029009.1 mouse_genomes_project 5 18695555 18742939 - MGP_C3HHeJ_P0069929 Ptpn12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0004688.1 MGP_C3HHeJ_G0004042.1 mouse_genomes_project 5 105495061 105501851 + Gm26703 antisense antisense MGP_C3HHeJ_T0004689.1 MGP_C3HHeJ_G0004042.1 mouse_genomes_project 5 105495134 105496770 + Gm26703 antisense antisense MGP_C3HHeJ_T0004690.1 MGP_C3HHeJ_G0004042.1 mouse_genomes_project 5 105499723 105505856 + Gm26703 antisense antisense MGP_C3HHeJ_T0001695.1 MGP_C3HHeJ_G0001619.1 mouse_genomes_project 5 102083536 102086376 + TEC TEC MGP_C3HHeJ_T0008053.1 MGP_C3HHeJ_G0006559.1 mouse_genomes_project 5 52355232 52356931 + lincRNA lincRNA MGP_C3HHeJ_T0008087.1 MGP_C3HHeJ_G0006585.1 mouse_genomes_project 5 74941487 74959516 + Gm6116 lincRNA lincRNA MGP_C3HHeJ_T0010582.1 MGP_C3HHeJ_G0008715.1 mouse_genomes_project 5 22550827 22550925 + Mir671 miRNA miRNA MGP_C3HHeJ_T0001862.1 MGP_C3HHeJ_G0001784.1 mouse_genomes_project 5 147752343 147753432 + TEC TEC MGP_C3HHeJ_T0014898.1 MGP_C3HHeJ_G0013002.1 mouse_genomes_project 5 100219691 100220111 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014854.1 MGP_C3HHeJ_G0012958.1 mouse_genomes_project 5 77404836 77405119 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001832.1 MGP_C3HHeJ_G0001755.1 mouse_genomes_project 5 135754965 135760435 - TEC TEC MGP_C3HHeJ_T0071709.1 MGP_C3HHeJ_G0029314.1 mouse_genomes_project 5 72391294 72418222 - MGP_C3HHeJ_P0071709 Gm5868 protein_coding protein_coding MGP_C3HHeJ_T0008377.1 MGP_C3HHeJ_G0006789.1 mouse_genomes_project 5 153958342 153959344 + Gm43332 lincRNA lincRNA MGP_C3HHeJ_T0004630.1 MGP_C3HHeJ_G0004002.1 mouse_genomes_project 5 66245258 66301881 - Uchl1os antisense antisense MGP_C3HHeJ_T0004631.1 MGP_C3HHeJ_G0004002.1 mouse_genomes_project 5 66280095 66301416 - Uchl1os antisense antisense MGP_C3HHeJ_T0100735.1 MGP_C3HHeJ_G0038929.1 mouse_genomes_project 5 153914464 153914562 + Gm23362 snoRNA snoRNA MGP_C3HHeJ_T0001784.1 MGP_C3HHeJ_G0001708.1 mouse_genomes_project 5 126685330 126686669 - TEC TEC MGP_C3HHeJ_T0008078.1 MGP_C3HHeJ_G0006579.1 mouse_genomes_project 5 73198137 73204332 + Gm34411 lincRNA lincRNA MGP_C3HHeJ_T0072493.1 MGP_C3HHeJ_G0029488.1 mouse_genomes_project 5 101943883 101963384 - MGP_C3HHeJ_P0072493 Coq2 protein_coding protein_coding MGP_C3HHeJ_T0072494.1 MGP_C3HHeJ_G0029488.1 mouse_genomes_project 5 101944418 101963299 - MGP_C3HHeJ_P0072494 Coq2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072495.1 MGP_C3HHeJ_G0029488.1 mouse_genomes_project 5 101947096 101963392 - MGP_C3HHeJ_P0072495 Coq2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015003.1 MGP_C3HHeJ_G0013107.1 mouse_genomes_project 5 146414286 146415250 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015039.1 MGP_C3HHeJ_G0013143.1 mouse_genomes_project 5 155898552 155900408 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072150.1 MGP_C3HHeJ_G0029411.1 mouse_genomes_project 5 89369285 89403364 + Mob1b protein_coding retained_intron MGP_C3HHeJ_T0072151.1 MGP_C3HHeJ_G0029411.1 mouse_genomes_project 5 89369285 89420948 + MGP_C3HHeJ_P0072151 Mob1b protein_coding protein_coding MGP_C3HHeJ_T0072152.1 MGP_C3HHeJ_G0029411.1 mouse_genomes_project 5 89369301 89414712 + MGP_C3HHeJ_P0072152 Mob1b protein_coding protein_coding MGP_C3HHeJ_T0072153.1 MGP_C3HHeJ_G0029411.1 mouse_genomes_project 5 89369407 89404079 + Mob1b protein_coding retained_intron MGP_C3HHeJ_T0001696.1 MGP_C3HHeJ_G0001620.1 mouse_genomes_project 5 102099524 102100600 - TEC TEC MGP_C3HHeJ_T0099480.1 MGP_C3HHeJ_G0037674.1 mouse_genomes_project 5 120632881 120632988 - Gm26411 snRNA snRNA MGP_C3HHeJ_T0075486.1 MGP_C3HHeJ_G0030060.1 mouse_genomes_project 5 149466340 149485433 + MGP_C3HHeJ_P0075486 Zkscan5 protein_coding protein_coding MGP_C3HHeJ_T0075487.1 MGP_C3HHeJ_G0030060.1 mouse_genomes_project 5 149466446 149485433 + MGP_C3HHeJ_P0075487 Zkscan5 protein_coding protein_coding MGP_C3HHeJ_T0075488.1 MGP_C3HHeJ_G0030060.1 mouse_genomes_project 5 149466899 149482285 + MGP_C3HHeJ_P0075488 Zkscan5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075489.1 MGP_C3HHeJ_G0030060.1 mouse_genomes_project 5 149470016 149482149 + MGP_C3HHeJ_P0075489 Zkscan5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075490.1 MGP_C3HHeJ_G0030060.1 mouse_genomes_project 5 149470046 149482203 + MGP_C3HHeJ_P0075490 Zkscan5 protein_coding protein_coding MGP_C3HHeJ_T0075491.1 MGP_C3HHeJ_G0030060.1 mouse_genomes_project 5 149471284 149482019 + Zkscan5 protein_coding processed_transcript MGP_C3HHeJ_T0014912.1 MGP_C3HHeJ_G0013016.1 mouse_genomes_project 5 106464291 106464798 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075279.1 MGP_C3HHeJ_G0030017.1 mouse_genomes_project 5 147143620 147156587 + MGP_C3HHeJ_P0075279 Fscn1 protein_coding protein_coding MGP_C3HHeJ_T0075280.1 MGP_C3HHeJ_G0030017.1 mouse_genomes_project 5 147143653 147156585 + MGP_C3HHeJ_P0075280 Fscn1 protein_coding protein_coding MGP_C3HHeJ_T0075281.1 MGP_C3HHeJ_G0030017.1 mouse_genomes_project 5 147144120 147155572 + MGP_C3HHeJ_P0075281 Fscn1 protein_coding protein_coding MGP_C3HHeJ_T0075282.1 MGP_C3HHeJ_G0030017.1 mouse_genomes_project 5 147146229 147154007 + Fscn1 protein_coding processed_transcript MGP_C3HHeJ_T0075283.1 MGP_C3HHeJ_G0030017.1 mouse_genomes_project 5 147146526 147155355 + Fscn1 protein_coding processed_transcript MGP_C3HHeJ_T0075284.1 MGP_C3HHeJ_G0030017.1 mouse_genomes_project 5 147147809 147154129 + Fscn1 protein_coding processed_transcript MGP_C3HHeJ_T0075285.1 MGP_C3HHeJ_G0030017.1 mouse_genomes_project 5 147153539 147155391 + Fscn1 protein_coding retained_intron MGP_C3HHeJ_T0008109.1 MGP_C3HHeJ_G0006602.1 mouse_genomes_project 5 86210585 86212563 + Gm43567 lincRNA lincRNA MGP_C3HHeJ_T0001454.1 MGP_C3HHeJ_G0001383.1 mouse_genomes_project 5 29287195 29289514 + TEC TEC MGP_C3HHeJ_T0001455.1 MGP_C3HHeJ_G0001383.1 mouse_genomes_project 5 29287197 29289514 + TEC TEC MGP_C3HHeJ_T0014687.1 MGP_C3HHeJ_G0012791.1 mouse_genomes_project 5 11306179 11306686 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001802.1 MGP_C3HHeJ_G0001725.1 mouse_genomes_project 5 131887382 131888051 - TEC TEC MGP_C3HHeJ_T0001574.1 MGP_C3HHeJ_G0001500.1 mouse_genomes_project 5 57170773 57173502 + TEC TEC MGP_C3HHeJ_T0071790.1 MGP_C3HHeJ_G0029327.1 mouse_genomes_project 5 73554708 73582781 - MGP_C3HHeJ_P0071790 Lrrc66 protein_coding protein_coding MGP_C3HHeJ_T0071791.1 MGP_C3HHeJ_G0029327.1 mouse_genomes_project 5 73579940 73580577 - MGP_C3HHeJ_P0071791 Lrrc66 protein_coding protein_coding MGP_C3HHeJ_T0075043.1 MGP_C3HHeJ_G0029966.1 mouse_genomes_project 5 142464649 142467313 - MGP_C3HHeJ_P0075043 1700123K08Rik protein_coding protein_coding MGP_C3HHeJ_T0004808.1 MGP_C3HHeJ_G0004128.1 mouse_genomes_project 5 147545730 147549188 + 0610040B10Rik antisense antisense MGP_C3HHeJ_T0004809.1 MGP_C3HHeJ_G0004128.1 mouse_genomes_project 5 147545791 147547434 + 0610040B10Rik antisense antisense MGP_C3HHeJ_T0004810.1 MGP_C3HHeJ_G0004128.1 mouse_genomes_project 5 147545810 147549185 + 0610040B10Rik antisense antisense MGP_C3HHeJ_T0074947.1 MGP_C3HHeJ_G0029943.1 mouse_genomes_project 5 141567931 141596641 - MGP_C3HHeJ_P0074947 Cyp3a13 protein_coding protein_coding MGP_C3HHeJ_T0014871.1 MGP_C3HHeJ_G0012975.1 mouse_genomes_project 5 88299454 88299559 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072232.1 MGP_C3HHeJ_G0029434.1 mouse_genomes_project 5 91810659 91828859 + MGP_C3HHeJ_P0072232 Ereg protein_coding protein_coding MGP_C3HHeJ_T0074513.1 MGP_C3HHeJ_G0029861.1 mouse_genomes_project 5 138365815 138367623 - MGP_C3HHeJ_P0074513 Cldn4 protein_coding protein_coding MGP_C3HHeJ_T0070158.1 MGP_C3HHeJ_G0029052.1 mouse_genomes_project 5 22722827 22723143 - Crygn protein_coding processed_transcript MGP_C3HHeJ_T0070159.1 MGP_C3HHeJ_G0029052.1 mouse_genomes_project 5 22722827 22729864 - MGP_C3HHeJ_P0070159 Crygn protein_coding protein_coding MGP_C3HHeJ_T0071440.1 MGP_C3HHeJ_G0029271.1 mouse_genomes_project 5 64588551 64628047 - Tmem156 protein_coding processed_transcript MGP_C3HHeJ_T0071441.1 MGP_C3HHeJ_G0029271.1 mouse_genomes_project 5 64598263 64628002 - MGP_C3HHeJ_P0071441 Tmem156 protein_coding protein_coding MGP_C3HHeJ_T0071442.1 MGP_C3HHeJ_G0029271.1 mouse_genomes_project 5 64600811 64616440 - MGP_C3HHeJ_P0071442 Tmem156 protein_coding unknown_likely_coding MGP_C3HHeJ_T0071443.1 MGP_C3HHeJ_G0029271.1 mouse_genomes_project 5 64627132 64628043 - Tmem156 protein_coding retained_intron MGP_C3HHeJ_T0070120.1 MGP_C3HHeJ_G0029043.1 mouse_genomes_project 5 22401173 22454717 + MGP_C3HHeJ_P0070120 Agap3 protein_coding protein_coding MGP_C3HHeJ_T0070121.1 MGP_C3HHeJ_G0029043.1 mouse_genomes_project 5 22401203 22434857 + MGP_C3HHeJ_P0070121 Agap3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0070122.1 MGP_C3HHeJ_G0029043.1 mouse_genomes_project 5 22401330 22433993 + Agap3 protein_coding processed_transcript MGP_C3HHeJ_T0070123.1 MGP_C3HHeJ_G0029043.1 mouse_genomes_project 5 22424717 22434849 + MGP_C3HHeJ_P0070123 Agap3 protein_coding protein_coding MGP_C3HHeJ_T0070124.1 MGP_C3HHeJ_G0029043.1 mouse_genomes_project 5 22430256 22454707 + MGP_C3HHeJ_P0070124 Agap3 protein_coding protein_coding MGP_C3HHeJ_T0070125.1 MGP_C3HHeJ_G0029043.1 mouse_genomes_project 5 22430675 22434847 + Agap3 protein_coding processed_transcript MGP_C3HHeJ_T0072396.1 MGP_C3HHeJ_G0029467.1 mouse_genomes_project 5 98230137 98260149 - MGP_C3HHeJ_P0072396 Paqr3 protein_coding protein_coding MGP_C3HHeJ_T0072397.1 MGP_C3HHeJ_G0029467.1 mouse_genomes_project 5 98234802 98260126 - MGP_C3HHeJ_P0072397 Paqr3 protein_coding protein_coding MGP_C3HHeJ_T0072398.1 MGP_C3HHeJ_G0029467.1 mouse_genomes_project 5 98244508 98246348 - Paqr3 protein_coding retained_intron MGP_C3HHeJ_T0072399.1 MGP_C3HHeJ_G0029467.1 mouse_genomes_project 5 98246100 98259996 - MGP_C3HHeJ_P0072399 Paqr3 protein_coding protein_coding MGP_C3HHeJ_T0072400.1 MGP_C3HHeJ_G0029467.1 mouse_genomes_project 5 98250708 98260149 - MGP_C3HHeJ_P0072400 Paqr3 protein_coding protein_coding MGP_C3HHeJ_T0072401.1 MGP_C3HHeJ_G0029467.1 mouse_genomes_project 5 98253146 98260137 - Paqr3 protein_coding retained_intron MGP_C3HHeJ_T0001714.1 MGP_C3HHeJ_G0001638.1 mouse_genomes_project 5 109376369 109377366 + TEC TEC MGP_C3HHeJ_T0001859.1 MGP_C3HHeJ_G0001781.1 mouse_genomes_project 5 147530594 147531620 + TEC TEC MGP_C3HHeJ_T0073587.1 MGP_C3HHeJ_G0029712.1 mouse_genomes_project 5 123530378 123542285 + MGP_C3HHeJ_P0073587 Oas1f protein_coding protein_coding MGP_C3HHeJ_T0073588.1 MGP_C3HHeJ_G0029712.1 mouse_genomes_project 5 123531381 123542285 + MGP_C3HHeJ_P0073588 Oas1f protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071064.1 MGP_C3HHeJ_G0029205.1 mouse_genomes_project 5 36545995 36643125 + MGP_C3HHeJ_P0071064 Stx18 protein_coding protein_coding MGP_C3HHeJ_T0071065.1 MGP_C3HHeJ_G0029205.1 mouse_genomes_project 5 36546013 36643131 + MGP_C3HHeJ_P0071065 Stx18 protein_coding protein_coding MGP_C3HHeJ_T0071066.1 MGP_C3HHeJ_G0029205.1 mouse_genomes_project 5 36546042 36643135 + MGP_C3HHeJ_P0071066 Stx18 protein_coding protein_coding MGP_C3HHeJ_T0071067.1 MGP_C3HHeJ_G0029205.1 mouse_genomes_project 5 36546044 36624206 + MGP_C3HHeJ_P0071067 Stx18 protein_coding protein_coding MGP_C3HHeJ_T0071068.1 MGP_C3HHeJ_G0029205.1 mouse_genomes_project 5 36583368 36638672 + MGP_C3HHeJ_P0071068 Stx18 protein_coding protein_coding MGP_C3HHeJ_T0071069.1 MGP_C3HHeJ_G0029205.1 mouse_genomes_project 5 36619072 36630028 + Stx18 protein_coding processed_transcript MGP_C3HHeJ_T0071070.1 MGP_C3HHeJ_G0029205.1 mouse_genomes_project 5 36629637 36638698 + Stx18 protein_coding retained_intron MGP_C3HHeJ_T0073796.1 MGP_C3HHeJ_G0029747.1 mouse_genomes_project 5 125487063 125553275 - MGP_C3HHeJ_P0073796 Ift81 protein_coding protein_coding MGP_C3HHeJ_T0073797.1 MGP_C3HHeJ_G0029747.1 mouse_genomes_project 5 125487067 125498276 - Ift81 protein_coding retained_intron MGP_C3HHeJ_T0073798.1 MGP_C3HHeJ_G0029747.1 mouse_genomes_project 5 125507237 125513049 - Ift81 protein_coding processed_transcript MGP_C3HHeJ_T0073799.1 MGP_C3HHeJ_G0029747.1 mouse_genomes_project 5 125530061 125542271 - MGP_C3HHeJ_P0073799 Ift81 protein_coding protein_coding MGP_C3HHeJ_T0073800.1 MGP_C3HHeJ_G0029747.1 mouse_genomes_project 5 125540959 125553263 - Ift81 protein_coding retained_intron MGP_C3HHeJ_T0073801.1 MGP_C3HHeJ_G0029747.1 mouse_genomes_project 5 125541089 125553202 - MGP_C3HHeJ_P0073801 Ift81 protein_coding protein_coding MGP_C3HHeJ_T0073802.1 MGP_C3HHeJ_G0029747.1 mouse_genomes_project 5 125541124 125553258 - MGP_C3HHeJ_P0073802 Ift81 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073803.1 MGP_C3HHeJ_G0029747.1 mouse_genomes_project 5 125543678 125546123 - Ift81 protein_coding retained_intron MGP_C3HHeJ_T0073804.1 MGP_C3HHeJ_G0029747.1 mouse_genomes_project 5 125545786 125553273 - MGP_C3HHeJ_P0073804 Ift81 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071362.1 MGP_C3HHeJ_G0029254.1 mouse_genomes_project 5 52547457 52745580 + MGP_C3HHeJ_P0071362 protein_coding protein_coding MGP_C3HHeJ_T0071363.1 MGP_C3HHeJ_G0029254.1 mouse_genomes_project 5 52646394 52647925 + protein_coding retained_intron MGP_C3HHeJ_T0071364.1 MGP_C3HHeJ_G0029254.1 mouse_genomes_project 5 52687292 52754426 + MGP_C3HHeJ_P0071364 protein_coding unknown_likely_coding MGP_C3HHeJ_T0071365.1 MGP_C3HHeJ_G0029254.1 mouse_genomes_project 5 52715936 52740594 + protein_coding processed_transcript MGP_C3HHeJ_T0071366.1 MGP_C3HHeJ_G0029254.1 mouse_genomes_project 5 52721414 52736656 + protein_coding processed_transcript MGP_C3HHeJ_T0071367.1 MGP_C3HHeJ_G0029254.1 mouse_genomes_project 5 52721577 52736656 + protein_coding processed_transcript MGP_C3HHeJ_T0071368.1 MGP_C3HHeJ_G0029254.1 mouse_genomes_project 5 52733252 52736658 + protein_coding retained_intron MGP_C3HHeJ_T0071369.1 MGP_C3HHeJ_G0029254.1 mouse_genomes_project 5 52740352 52748647 + protein_coding retained_intron MGP_C3HHeJ_T0071165.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42338755 42377288 - MGP_C3HHeJ_P0071165 Fbxl5 protein_coding protein_coding MGP_C3HHeJ_T0071166.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42338756 42377254 - MGP_C3HHeJ_P0071166 Fbxl5 protein_coding protein_coding MGP_C3HHeJ_T0071167.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42338764 42421038 - MGP_C3HHeJ_P0071167 Fbxl5 protein_coding protein_coding MGP_C3HHeJ_T0071168.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42339439 42377193 - MGP_C3HHeJ_P0071168 Fbxl5 protein_coding protein_coding MGP_C3HHeJ_T0071169.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42344746 42377247 - MGP_C3HHeJ_P0071169 Fbxl5 protein_coding protein_coding MGP_C3HHeJ_T0071170.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42350164 42377266 - MGP_C3HHeJ_P0071170 Fbxl5 protein_coding protein_coding MGP_C3HHeJ_T0071171.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42352144 42377282 - MGP_C3HHeJ_P0071171 Fbxl5 protein_coding protein_coding MGP_C3HHeJ_T0071172.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42352949 42354144 - Fbxl5 protein_coding retained_intron MGP_C3HHeJ_T0071173.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42355291 42377247 - Fbxl5 protein_coding retained_intron MGP_C3HHeJ_T0071174.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42356571 42377263 - Fbxl5 protein_coding retained_intron MGP_C3HHeJ_T0071175.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42362417 42377245 - MGP_C3HHeJ_P0071175 Fbxl5 protein_coding protein_coding MGP_C3HHeJ_T0072863.1 MGP_C3HHeJ_G0029570.1 mouse_genomes_project 5 110981628 111007395 - MGP_C3HHeJ_P0072863 Vmn2r13 protein_coding protein_coding MGP_C3HHeJ_T0014774.1 MGP_C3HHeJ_G0012878.1 mouse_genomes_project 5 37940058 37940957 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014884.1 MGP_C3HHeJ_G0012988.1 mouse_genomes_project 5 92493937 92494315 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001771.1 MGP_C3HHeJ_G0001695.1 mouse_genomes_project 5 125067023 125069364 + TEC TEC MGP_C3HHeJ_T0004597.1 MGP_C3HHeJ_G0003977.1 mouse_genomes_project 5 35210955 35212775 + Gm43701 antisense antisense MGP_C3HHeJ_T0001841.1 MGP_C3HHeJ_G0001763.1 mouse_genomes_project 5 137846599 137850808 - TEC TEC MGP_C3HHeJ_T0101232.1 MGP_C3HHeJ_G0039362.1 mouse_genomes_project 5 86596311 86597311 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101233.1 MGP_C3HHeJ_G0039362.1 mouse_genomes_project 5 86596366 86597450 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0070099.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22386953 22393708 - MGP_C3HHeJ_P0070099 Fastk protein_coding protein_coding MGP_C3HHeJ_T0070100.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22386954 22393700 - Fastk protein_coding retained_intron MGP_C3HHeJ_T0070102.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22389552 22390729 - Fastk protein_coding retained_intron MGP_C3HHeJ_T0070103.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22389552 22393720 - MGP_C3HHeJ_P0070103 Fastk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070104.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22389552 22393801 - MGP_C3HHeJ_P0070104 Fastk protein_coding protein_coding MGP_C3HHeJ_T0070105.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22389553 22393701 - Fastk protein_coding retained_intron MGP_C3HHeJ_T0070106.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22389553 22390038 - Fastk protein_coding retained_intron MGP_C3HHeJ_T0070107.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22389556 22393722 - MGP_C3HHeJ_P0070107 Fastk protein_coding protein_coding MGP_C3HHeJ_T0070108.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22390041 22390615 - Fastk protein_coding retained_intron MGP_C3HHeJ_T0070109.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22390133 22390812 - Fastk protein_coding processed_transcript MGP_C3HHeJ_T0070110.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22390437 22392472 - Fastk protein_coding retained_intron MGP_C3HHeJ_T0070111.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22390584 22393752 - Fastk protein_coding processed_transcript MGP_C3HHeJ_T0070112.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22391814 22393722 - Fastk protein_coding retained_intron MGP_C3HHeJ_T0070113.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22391882 22393711 - Fastk protein_coding processed_transcript MGP_C3HHeJ_T0070114.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22392444 22393711 - Fastk protein_coding processed_transcript MGP_C3HHeJ_T0001616.1 MGP_C3HHeJ_G0001541.1 mouse_genomes_project 5 65935866 65937871 - TEC TEC MGP_C3HHeJ_T0001426.1 MGP_C3HHeJ_G0001356.1 mouse_genomes_project 5 12236402 12238673 + TEC TEC MGP_C3HHeJ_T0014727.1 MGP_C3HHeJ_G0012831.1 mouse_genomes_project 5 22153369 22153767 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001824.1 MGP_C3HHeJ_G0001747.1 mouse_genomes_project 5 135261567 135265404 - TEC TEC MGP_C3HHeJ_T0001846.1 MGP_C3HHeJ_G0001768.1 mouse_genomes_project 5 138931394 138933035 - TEC TEC MGP_C3HHeJ_T0014881.1 MGP_C3HHeJ_G0012985.1 mouse_genomes_project 5 90834410 90834857 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069739.1 MGP_C3HHeJ_G0028977.1 mouse_genomes_project 5 2809612 2813683 - MGP_C3HHeJ_P0069739 protein_coding protein_coding MGP_C3HHeJ_T0069740.1 MGP_C3HHeJ_G0028977.1 mouse_genomes_project 5 2809703 2822266 - MGP_C3HHeJ_P0069740 protein_coding unknown_likely_coding MGP_C3HHeJ_T0074024.1 MGP_C3HHeJ_G0029780.1 mouse_genomes_project 5 127092862 127127786 - MGP_C3HHeJ_P0074024 Abcb9 protein_coding protein_coding MGP_C3HHeJ_T0074025.1 MGP_C3HHeJ_G0029780.1 mouse_genomes_project 5 127093755 127111149 - Abcb9 protein_coding retained_intron MGP_C3HHeJ_T0074026.1 MGP_C3HHeJ_G0029780.1 mouse_genomes_project 5 127103725 127122282 - MGP_C3HHeJ_P0074026 Abcb9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074027.1 MGP_C3HHeJ_G0029780.1 mouse_genomes_project 5 127103729 127122282 - MGP_C3HHeJ_P0074027 Abcb9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074028.1 MGP_C3HHeJ_G0029780.1 mouse_genomes_project 5 127108136 127111864 - Abcb9 protein_coding processed_transcript MGP_C3HHeJ_T0074029.1 MGP_C3HHeJ_G0029780.1 mouse_genomes_project 5 127119954 127127774 - Abcb9 protein_coding retained_intron MGP_C3HHeJ_T0008115.1 MGP_C3HHeJ_G0006608.1 mouse_genomes_project 5 91663981 91666152 + Gm42530 lincRNA lincRNA MGP_C3HHeJ_T0001450.1 MGP_C3HHeJ_G0001379.1 mouse_genomes_project 5 27378078 27382374 - TEC TEC MGP_C3HHeJ_T0001477.1 MGP_C3HHeJ_G0001404.1 mouse_genomes_project 5 34011668 34012314 - TEC TEC MGP_C3HHeJ_T0001710.1 MGP_C3HHeJ_G0001634.1 mouse_genomes_project 5 107477959 107480221 + TEC TEC MGP_C3HHeJ_T0008400.1 MGP_C3HHeJ_G0006803.1 mouse_genomes_project 5 156148784 156153126 + Gm42904 lincRNA lincRNA MGP_C3HHeJ_T0072021.1 MGP_C3HHeJ_G0029365.1 mouse_genomes_project 5 86641755 86703113 - MGP_C3HHeJ_P0072021 Uba6 protein_coding protein_coding MGP_C3HHeJ_T0072022.1 MGP_C3HHeJ_G0029365.1 mouse_genomes_project 5 86649918 86703114 - Uba6 protein_coding retained_intron MGP_C3HHeJ_T0072443.1 MGP_C3HHeJ_G0029480.1 mouse_genomes_project 5 101224720 101225323 + MGP_C3HHeJ_P0072443 4930524J08Rik protein_coding protein_coding MGP_C3HHeJ_T0008055.1 MGP_C3HHeJ_G0006561.1 mouse_genomes_project 5 53495423 53505250 + Gm10440 lincRNA lincRNA MGP_C3HHeJ_T0008114.1 MGP_C3HHeJ_G0006607.1 mouse_genomes_project 5 91571036 91574660 + Gm43086 lincRNA lincRNA MGP_C3HHeJ_T0014742.1 MGP_C3HHeJ_G0012846.1 mouse_genomes_project 5 25916582 25917564 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008268.1 MGP_C3HHeJ_G0006714.1 mouse_genomes_project 5 126100667 126106207 - lincRNA lincRNA MGP_C3HHeJ_T0008270.1 MGP_C3HHeJ_G0006714.1 mouse_genomes_project 5 126102388 126107446 - lincRNA lincRNA MGP_C3HHeJ_T0008271.1 MGP_C3HHeJ_G0006714.1 mouse_genomes_project 5 126102559 126115774 - lincRNA lincRNA MGP_C3HHeJ_T0008272.1 MGP_C3HHeJ_G0006714.1 mouse_genomes_project 5 126102939 126116364 - lincRNA lincRNA MGP_C3HHeJ_T0008274.1 MGP_C3HHeJ_G0006714.1 mouse_genomes_project 5 126104323 126115787 - lincRNA lincRNA MGP_C3HHeJ_T0008275.1 MGP_C3HHeJ_G0006714.1 mouse_genomes_project 5 126105568 126108388 - lincRNA lincRNA MGP_C3HHeJ_T0008276.1 MGP_C3HHeJ_G0006714.1 mouse_genomes_project 5 126106140 126115765 - lincRNA lincRNA MGP_C3HHeJ_T0075000.1 MGP_C3HHeJ_G0029955.1 mouse_genomes_project 5 141881932 141888309 + MGP_C3HHeJ_P0075000 Cnpy4 protein_coding protein_coding MGP_C3HHeJ_T0075001.1 MGP_C3HHeJ_G0029955.1 mouse_genomes_project 5 141884306 141886988 + MGP_C3HHeJ_P0075001 Cnpy4 protein_coding protein_coding MGP_C3HHeJ_T0075002.1 MGP_C3HHeJ_G0029955.1 mouse_genomes_project 5 141884501 141886541 + Cnpy4 protein_coding retained_intron MGP_C3HHeJ_T0001579.1 MGP_C3HHeJ_G0001505.1 mouse_genomes_project 5 57241528 57243632 + TEC TEC MGP_C3HHeJ_T0074030.1 MGP_C3HHeJ_G0029781.1 mouse_genomes_project 5 127142499 127145264 + Ogfod2 protein_coding retained_intron MGP_C3HHeJ_T0074031.1 MGP_C3HHeJ_G0029781.1 mouse_genomes_project 5 127142503 127144685 + MGP_C3HHeJ_P0074031 Ogfod2 protein_coding protein_coding MGP_C3HHeJ_T0074032.1 MGP_C3HHeJ_G0029781.1 mouse_genomes_project 5 127142516 127145668 + MGP_C3HHeJ_P0074032 Ogfod2 protein_coding protein_coding MGP_C3HHeJ_T0074033.1 MGP_C3HHeJ_G0029781.1 mouse_genomes_project 5 127142518 127144553 + Ogfod2 protein_coding retained_intron MGP_C3HHeJ_T0074034.1 MGP_C3HHeJ_G0029781.1 mouse_genomes_project 5 127142518 127144641 + MGP_C3HHeJ_P0074034 Ogfod2 protein_coding protein_coding MGP_C3HHeJ_T0074035.1 MGP_C3HHeJ_G0029781.1 mouse_genomes_project 5 127142535 127144945 + MGP_C3HHeJ_P0074035 Ogfod2 protein_coding protein_coding MGP_C3HHeJ_T0074036.1 MGP_C3HHeJ_G0029781.1 mouse_genomes_project 5 127142609 127145146 + MGP_C3HHeJ_P0074036 Ogfod2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074037.1 MGP_C3HHeJ_G0029781.1 mouse_genomes_project 5 127142993 127144396 + Ogfod2 protein_coding retained_intron MGP_C3HHeJ_T0074038.1 MGP_C3HHeJ_G0029781.1 mouse_genomes_project 5 127143481 127145061 + Ogfod2 protein_coding retained_intron MGP_C3HHeJ_T0014836.1 MGP_C3HHeJ_G0012940.1 mouse_genomes_project 5 71836517 71837288 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001697.1 MGP_C3HHeJ_G0001621.1 mouse_genomes_project 5 102169852 102172202 + TEC TEC MGP_C3HHeJ_T0071778.1 MGP_C3HHeJ_G0029325.1 mouse_genomes_project 5 73348912 73398465 + MGP_C3HHeJ_P0071778 Cwh43 protein_coding protein_coding MGP_C3HHeJ_T0071779.1 MGP_C3HHeJ_G0029325.1 mouse_genomes_project 5 73349064 73398475 + MGP_C3HHeJ_P0071779 Cwh43 protein_coding protein_coding MGP_C3HHeJ_T0071780.1 MGP_C3HHeJ_G0029325.1 mouse_genomes_project 5 73349199 73398322 + MGP_C3HHeJ_P0071780 Cwh43 protein_coding unknown_likely_coding MGP_C3HHeJ_T0071781.1 MGP_C3HHeJ_G0029325.1 mouse_genomes_project 5 73377643 73381803 + Cwh43 protein_coding retained_intron MGP_C3HHeJ_T0001451.1 MGP_C3HHeJ_G0001380.1 mouse_genomes_project 5 28095599 28099600 - TEC TEC MGP_C3HHeJ_T0004592.1 MGP_C3HHeJ_G0003972.1 mouse_genomes_project 5 33072954 33074714 + Gm15522 antisense antisense MGP_C3HHeJ_T0014964.1 MGP_C3HHeJ_G0013068.1 mouse_genomes_project 5 124326514 124326847 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070053.1 MGP_C3HHeJ_G0029032.1 mouse_genomes_project 5 22039900 22102597 + MGP_C3HHeJ_P0070053 Klhl7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070054.1 MGP_C3HHeJ_G0029032.1 mouse_genomes_project 5 22039942 22076624 + Klhl7 protein_coding retained_intron MGP_C3HHeJ_T0070055.1 MGP_C3HHeJ_G0029032.1 mouse_genomes_project 5 22040049 22105186 + MGP_C3HHeJ_P0070055 Klhl7 protein_coding protein_coding MGP_C3HHeJ_T0098518.1 MGP_C3HHeJ_G0036719.1 mouse_genomes_project 5 154844654 154844919 + Gm42558 sense_intronic sense_intronic MGP_C3HHeJ_T0004774.1 MGP_C3HHeJ_G0004103.1 mouse_genomes_project 5 134893365 134904612 + 2810432F15Rik antisense antisense MGP_C3HHeJ_T0004559.1 MGP_C3HHeJ_G0003945.1 mouse_genomes_project 5 5919144 5949154 - Gm5106 antisense antisense MGP_C3HHeJ_T0071022.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35501589 35565652 + MGP_C3HHeJ_P0071022 Jakmip1 protein_coding protein_coding MGP_C3HHeJ_T0071023.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35502365 35559518 + Jakmip1 protein_coding processed_transcript MGP_C3HHeJ_T0071024.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35503120 35565748 + MGP_C3HHeJ_P0071024 Jakmip1 protein_coding protein_coding MGP_C3HHeJ_T0071025.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35503140 35565447 + MGP_C3HHeJ_P0071025 Jakmip1 protein_coding protein_coding MGP_C3HHeJ_T0071026.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35520270 35559538 + Jakmip1 protein_coding processed_transcript MGP_C3HHeJ_T0071027.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35520668 35561163 + Jakmip1 protein_coding retained_intron MGP_C3HHeJ_T0071028.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35520709 35579962 + MGP_C3HHeJ_P0071028 Jakmip1 protein_coding protein_coding MGP_C3HHeJ_T0071029.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35524094 35601699 + MGP_C3HHeJ_P0071029 Jakmip1 protein_coding protein_coding MGP_C3HHeJ_T0071030.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35524153 35561453 + Jakmip1 protein_coding retained_intron MGP_C3HHeJ_T0071031.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35559577 35623798 + MGP_C3HHeJ_P0071031 Jakmip1 protein_coding protein_coding MGP_C3HHeJ_T0071032.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35559577 35623798 + MGP_C3HHeJ_P0071032 Jakmip1 protein_coding protein_coding MGP_C3HHeJ_T0071033.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35565284 35566234 + Jakmip1 protein_coding retained_intron MGP_C3HHeJ_T0071034.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35599369 35601418 + Jakmip1 protein_coding retained_intron MGP_C3HHeJ_T0071035.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35602625 35627088 + MGP_C3HHeJ_P0071035 Jakmip1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0075027.1 MGP_C3HHeJ_G0029963.1 mouse_genomes_project 5 142104969 142117434 + MGP_C3HHeJ_P0075027 Stag3 protein_coding protein_coding MGP_C3HHeJ_T0075028.1 MGP_C3HHeJ_G0029963.1 mouse_genomes_project 5 142105238 142143664 + Stag3 protein_coding retained_intron MGP_C3HHeJ_T0075029.1 MGP_C3HHeJ_G0029963.1 mouse_genomes_project 5 142105255 142143661 + Stag3 protein_coding retained_intron MGP_C3HHeJ_T0075030.1 MGP_C3HHeJ_G0029963.1 mouse_genomes_project 5 142105255 142143664 + MGP_C3HHeJ_P0075030 Stag3 protein_coding protein_coding MGP_C3HHeJ_T0075031.1 MGP_C3HHeJ_G0029963.1 mouse_genomes_project 5 142105273 142143664 + MGP_C3HHeJ_P0075031 Stag3 protein_coding protein_coding MGP_C3HHeJ_T0075032.1 MGP_C3HHeJ_G0029963.1 mouse_genomes_project 5 142105285 142117089 + MGP_C3HHeJ_P0075032 Stag3 protein_coding protein_coding MGP_C3HHeJ_T0075033.1 MGP_C3HHeJ_G0029963.1 mouse_genomes_project 5 142128929 142131195 + Stag3 protein_coding processed_transcript MGP_C3HHeJ_T0075034.1 MGP_C3HHeJ_G0029963.1 mouse_genomes_project 5 142134179 142140569 + MGP_C3HHeJ_P0075034 Stag3 protein_coding protein_coding MGP_C3HHeJ_T0075035.1 MGP_C3HHeJ_G0029963.1 mouse_genomes_project 5 142140523 142143657 + MGP_C3HHeJ_P0075035 Stag3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075531.1 MGP_C3HHeJ_G0030074.1 mouse_genomes_project 5 151317249 151374651 - MGP_C3HHeJ_P0075531 Usp12 protein_coding protein_coding MGP_C3HHeJ_T0075532.1 MGP_C3HHeJ_G0030074.1 mouse_genomes_project 5 151317279 151335301 - Usp12 protein_coding processed_transcript MGP_C3HHeJ_T0075533.1 MGP_C3HHeJ_G0030074.1 mouse_genomes_project 5 151323714 151335309 - Usp12 protein_coding processed_transcript MGP_C3HHeJ_T0001757.1 MGP_C3HHeJ_G0001681.1 mouse_genomes_project 5 121222464 121225157 + TEC TEC MGP_C3HHeJ_T0070980.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34974609 35059788 - MGP_C3HHeJ_P0070980 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070981.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34974609 35067860 - MGP_C3HHeJ_P0070981 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070982.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34974609 35067266 - MGP_C3HHeJ_P0070982 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070983.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34974610 35015773 - MGP_C3HHeJ_P0070983 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070984.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34974613 35016752 - MGP_C3HHeJ_P0070984 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070985.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34974613 35067255 - MGP_C3HHeJ_P0070985 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070986.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34977030 34992840 - MGP_C3HHeJ_P0070986 Tbc1d14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070987.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34977148 35071716 - MGP_C3HHeJ_P0070987 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070988.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34977150 35071708 - MGP_C3HHeJ_P0070988 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070989.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34977155 34978390 - Tbc1d14 protein_coding processed_transcript MGP_C3HHeJ_T0070990.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34977355 35056824 - MGP_C3HHeJ_P0070990 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070991.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34977423 35015698 - MGP_C3HHeJ_P0070991 Tbc1d14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070992.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34980137 35005646 - Tbc1d14 protein_coding retained_intron MGP_C3HHeJ_T0070993.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35004456 35015669 - MGP_C3HHeJ_P0070993 Tbc1d14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070994.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35010100 35015657 - Tbc1d14 protein_coding processed_transcript MGP_C3HHeJ_T0070995.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35026530 35067853 - Tbc1d14 protein_coding retained_intron MGP_C3HHeJ_T0070996.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35028423 35049340 - Tbc1d14 protein_coding processed_transcript MGP_C3HHeJ_T0070997.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35028485 35058956 - MGP_C3HHeJ_P0070997 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070998.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35056450 35071675 - Tbc1d14 protein_coding retained_intron MGP_C3HHeJ_T0070999.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35056823 35071675 - MGP_C3HHeJ_P0070999 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0071000.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35056872 35058727 - MGP_C3HHeJ_P0071000 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0071001.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35057067 35079680 - MGP_C3HHeJ_P0071001 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0071002.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35057477 35079705 - MGP_C3HHeJ_P0071002 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0014977.1 MGP_C3HHeJ_G0013081.1 mouse_genomes_project 5 137235022 137235866 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010601.1 MGP_C3HHeJ_G0008734.1 mouse_genomes_project 5 66689868 66689982 - Gm23841 miRNA miRNA MGP_C3HHeJ_T0001834.1 MGP_C3HHeJ_G0001757.1 mouse_genomes_project 5 135802994 135803820 - TEC TEC MGP_C3HHeJ_T0014817.1 MGP_C3HHeJ_G0012921.1 mouse_genomes_project 5 60037389 60039182 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008326.1 MGP_C3HHeJ_G0006747.1 mouse_genomes_project 5 139119852 139142765 - Gm43091 lincRNA lincRNA MGP_C3HHeJ_T0071792.1 MGP_C3HHeJ_G0029328.1 mouse_genomes_project 5 73583001 73597989 - MGP_C3HHeJ_P0071792 Sgcb protein_coding protein_coding MGP_C3HHeJ_T0071793.1 MGP_C3HHeJ_G0029328.1 mouse_genomes_project 5 73594214 73594677 - Sgcb protein_coding retained_intron MGP_C3HHeJ_T0008309.1 MGP_C3HHeJ_G0006737.1 mouse_genomes_project 5 131590819 131591692 + Gm42500 lincRNA lincRNA MGP_C3HHeJ_T0001701.1 MGP_C3HHeJ_G0001625.1 mouse_genomes_project 5 103387432 103388469 - TEC TEC MGP_C3HHeJ_T0071645.1 MGP_C3HHeJ_G0029300.1 mouse_genomes_project 5 67691745 67833925 + MGP_C3HHeJ_P0071645 Grxcr1 protein_coding protein_coding MGP_C3HHeJ_T0073012.1 MGP_C3HHeJ_G0029598.1 mouse_genomes_project 5 114304699 114319768 + MGP_C3HHeJ_P0073012 Crybb1 protein_coding protein_coding MGP_C3HHeJ_T0073013.1 MGP_C3HHeJ_G0029598.1 mouse_genomes_project 5 114304729 114319640 + MGP_C3HHeJ_P0073013 Crybb1 protein_coding protein_coding MGP_C3HHeJ_T0073014.1 MGP_C3HHeJ_G0029598.1 mouse_genomes_project 5 114304758 114319685 + MGP_C3HHeJ_P0073014 Crybb1 protein_coding protein_coding MGP_C3HHeJ_T0008390.1 MGP_C3HHeJ_G0006796.1 mouse_genomes_project 5 154711975 154712966 - Gm43452 lincRNA lincRNA MGP_C3HHeJ_T0004575.1 MGP_C3HHeJ_G0003958.1 mouse_genomes_project 5 22841056 22843447 + Prkag2os2 antisense antisense MGP_C3HHeJ_T0004599.1 MGP_C3HHeJ_G0003979.1 mouse_genomes_project 5 35511439 35514924 - Gm26647 antisense antisense MGP_C3HHeJ_T0015017.1 MGP_C3HHeJ_G0013121.1 mouse_genomes_project 5 150313856 150314179 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075007.1 MGP_C3HHeJ_G0029959.1 mouse_genomes_project 5 142084395 142088731 - MGP_C3HHeJ_P0075007 BC037034 protein_coding protein_coding MGP_C3HHeJ_T0075008.1 MGP_C3HHeJ_G0029959.1 mouse_genomes_project 5 142084397 142088077 - MGP_C3HHeJ_P0075008 BC037034 protein_coding protein_coding MGP_C3HHeJ_T0075009.1 MGP_C3HHeJ_G0029959.1 mouse_genomes_project 5 142084398 142088727 - MGP_C3HHeJ_P0075009 BC037034 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075010.1 MGP_C3HHeJ_G0029959.1 mouse_genomes_project 5 142084399 142088770 - BC037034 protein_coding retained_intron MGP_C3HHeJ_T0075011.1 MGP_C3HHeJ_G0029959.1 mouse_genomes_project 5 142084841 142085682 - MGP_C3HHeJ_P0075011 BC037034 protein_coding protein_coding MGP_C3HHeJ_T0075012.1 MGP_C3HHeJ_G0029959.1 mouse_genomes_project 5 142086306 142086931 - BC037034 protein_coding retained_intron MGP_C3HHeJ_T0075013.1 MGP_C3HHeJ_G0029959.1 mouse_genomes_project 5 142086989 142087875 - BC037034 protein_coding retained_intron MGP_C3HHeJ_T0014794.1 MGP_C3HHeJ_G0012898.1 mouse_genomes_project 5 51960681 51961676 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075191.1 MGP_C3HHeJ_G0029998.1 mouse_genomes_project 5 144596566 144599626 - MGP_C3HHeJ_P0075191 Grifin protein_coding protein_coding MGP_C3HHeJ_T0073503.1 MGP_C3HHeJ_G0029691.1 mouse_genomes_project 5 120736013 120758576 + MGP_C3HHeJ_P0073503 2410131K14Rik protein_coding protein_coding MGP_C3HHeJ_T0014999.1 MGP_C3HHeJ_G0013103.1 mouse_genomes_project 5 143666181 143666557 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008032.1 MGP_C3HHeJ_G0006539.1 mouse_genomes_project 5 38521958 38532390 - Gm35191 lincRNA lincRNA MGP_C3HHeJ_T0001736.1 MGP_C3HHeJ_G0001660.1 mouse_genomes_project 5 116063929 116068426 - TEC TEC MGP_C3HHeJ_T0014945.1 MGP_C3HHeJ_G0013049.1 mouse_genomes_project 5 113005526 113005893 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099433.1 MGP_C3HHeJ_G0037627.1 mouse_genomes_project 5 35122207 35122311 - Gm24878 snRNA snRNA MGP_C3HHeJ_T0001829.1 MGP_C3HHeJ_G0001752.1 mouse_genomes_project 5 135625111 135627408 - TEC TEC MGP_C3HHeJ_T0008337.1 MGP_C3HHeJ_G0006755.1 mouse_genomes_project 5 141899460 141956465 - lincRNA lincRNA MGP_C3HHeJ_T0001677.1 MGP_C3HHeJ_G0001601.1 mouse_genomes_project 5 91551449 91554582 + TEC TEC MGP_C3HHeJ_T0099441.1 MGP_C3HHeJ_G0037635.1 mouse_genomes_project 5 65766714 65766821 - Gm22929 snRNA snRNA MGP_C3HHeJ_T0004784.1 MGP_C3HHeJ_G0004111.1 mouse_genomes_project 5 138437307 138438447 - Abhd11os antisense antisense MGP_C3HHeJ_T0004785.1 MGP_C3HHeJ_G0004111.1 mouse_genomes_project 5 138437315 138438348 - Abhd11os antisense antisense MGP_C3HHeJ_T0072068.1 MGP_C3HHeJ_G0029386.1 mouse_genomes_project 5 88110517 88124826 - MGP_C3HHeJ_P0072068 Sult1d1 protein_coding protein_coding MGP_C3HHeJ_T0072069.1 MGP_C3HHeJ_G0029386.1 mouse_genomes_project 5 88111812 88116064 - Sult1d1 protein_coding processed_transcript MGP_C3HHeJ_T0015014.1 MGP_C3HHeJ_G0013118.1 mouse_genomes_project 5 149695772 149696358 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070798.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32740924 32758031 + MGP_C3HHeJ_P0070798 Rnf4 protein_coding protein_coding MGP_C3HHeJ_T0070799.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32740963 32755121 + Rnf4 protein_coding retained_intron MGP_C3HHeJ_T0070800.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32741015 32758028 + MGP_C3HHeJ_P0070800 Rnf4 protein_coding protein_coding MGP_C3HHeJ_T0070801.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32741025 32754627 + Rnf4 protein_coding processed_transcript MGP_C3HHeJ_T0070802.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32741052 32751728 + Rnf4 protein_coding retained_intron MGP_C3HHeJ_T0070803.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32741054 32747261 + Rnf4 protein_coding processed_transcript MGP_C3HHeJ_T0070804.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32741059 32752020 + Rnf4 protein_coding retained_intron MGP_C3HHeJ_T0070805.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32741081 32754462 + Rnf4 protein_coding retained_intron MGP_C3HHeJ_T0070806.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32741320 32754624 + MGP_C3HHeJ_P0070806 Rnf4 protein_coding protein_coding MGP_C3HHeJ_T0070807.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32741567 32758016 + MGP_C3HHeJ_P0070807 Rnf4 protein_coding protein_coding MGP_C3HHeJ_T0070808.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32741954 32747297 + Rnf4 protein_coding processed_transcript MGP_C3HHeJ_T0070809.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32755707 32760221 + Rnf4 protein_coding retained_intron MGP_C3HHeJ_T0001732.1 MGP_C3HHeJ_G0001656.1 mouse_genomes_project 5 115256177 115257090 - TEC TEC MGP_C3HHeJ_T0011738.1 MGP_C3HHeJ_G0009846.1 mouse_genomes_project 5 106910198 106951012 - MGP_C3HHeJ_P0011738 Gbp11 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0097912.1 MGP_C3HHeJ_G0036124.1 mouse_genomes_project 5 139108567 139108949 - pseudogene pseudogene MGP_C3HHeJ_T0001709.1 MGP_C3HHeJ_G0001633.1 mouse_genomes_project 5 107071496 107073668 + TEC TEC MGP_C3HHeJ_T0069816.1 MGP_C3HHeJ_G0028990.1 mouse_genomes_project 5 6272768 6337510 + MGP_C3HHeJ_P0069816 Tmem243 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069817.1 MGP_C3HHeJ_G0028990.1 mouse_genomes_project 5 6272880 6296479 + MGP_C3HHeJ_P0069817 Tmem243 protein_coding protein_coding MGP_C3HHeJ_T0069835.1 MGP_C3HHeJ_G0028990.1 mouse_genomes_project 5 6335162 6340406 + Tmem243 protein_coding processed_transcript MGP_C3HHeJ_T0072638.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107293604 107414000 + MGP_C3HHeJ_P0072638 Lrrc8d protein_coding protein_coding MGP_C3HHeJ_T0072639.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107294423 107413995 + MGP_C3HHeJ_P0072639 Lrrc8d protein_coding protein_coding MGP_C3HHeJ_T0072640.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107294444 107324443 + Lrrc8d protein_coding retained_intron MGP_C3HHeJ_T0072641.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107294500 107324441 + Lrrc8d protein_coding processed_transcript MGP_C3HHeJ_T0072642.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107321593 107410621 + MGP_C3HHeJ_P0072642 Lrrc8d protein_coding protein_coding MGP_C3HHeJ_T0072643.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107321990 107410632 + MGP_C3HHeJ_P0072643 Lrrc8d protein_coding protein_coding MGP_C3HHeJ_T0072644.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107322196 107412423 + Lrrc8d protein_coding processed_transcript MGP_C3HHeJ_T0072645.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107322269 107410788 + MGP_C3HHeJ_P0072645 Lrrc8d protein_coding protein_coding MGP_C3HHeJ_T0072646.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107322436 107432030 + Lrrc8d protein_coding processed_transcript MGP_C3HHeJ_T0072647.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107423245 107432029 + Lrrc8d protein_coding processed_transcript MGP_C3HHeJ_T0100722.1 MGP_C3HHeJ_G0038916.1 mouse_genomes_project 5 109617379 109617473 + Snord21 snoRNA snoRNA MGP_C3HHeJ_T0004747.1 MGP_C3HHeJ_G0004085.1 mouse_genomes_project 5 124932782 124940459 + Gm15637 antisense antisense MGP_C3HHeJ_T0100734.1 MGP_C3HHeJ_G0038928.1 mouse_genomes_project 5 151831626 151831756 - Gm24556 snoRNA snoRNA MGP_C3HHeJ_T0102056.1 MGP_C3HHeJ_G0040021.1 mouse_genomes_project 5 144467877 144499516 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001682.1 MGP_C3HHeJ_G0001606.1 mouse_genomes_project 5 93929918 93930511 - TEC TEC MGP_C3HHeJ_T0014672.1 MGP_C3HHeJ_G0012776.1 mouse_genomes_project 5 4509481 4510482 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073219.1 MGP_C3HHeJ_G0029638.1 mouse_genomes_project 5 116898414 116918775 - MGP_C3HHeJ_P0073219 Gltp protein_coding protein_coding MGP_C3HHeJ_T0073220.1 MGP_C3HHeJ_G0029638.1 mouse_genomes_project 5 116899099 116918732 - MGP_C3HHeJ_P0073220 Gltp protein_coding protein_coding MGP_C3HHeJ_T0073221.1 MGP_C3HHeJ_G0029638.1 mouse_genomes_project 5 116899244 116918699 - MGP_C3HHeJ_P0073221 Gltp protein_coding protein_coding MGP_C3HHeJ_T0011506.1 MGP_C3HHeJ_G0009639.1 mouse_genomes_project 5 101702239 101702418 + Gm27286 misc_RNA misc_RNA MGP_C3HHeJ_T0070164.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22830518 23080960 - MGP_C3HHeJ_P0070164 Prkag2 protein_coding protein_coding MGP_C3HHeJ_T0070165.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22830522 22970914 - MGP_C3HHeJ_P0070165 Prkag2 protein_coding protein_coding MGP_C3HHeJ_T0070166.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22830522 22876445 - MGP_C3HHeJ_P0070166 Prkag2 protein_coding protein_coding MGP_C3HHeJ_T0070167.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22831547 22839265 - Prkag2 protein_coding retained_intron MGP_C3HHeJ_T0070168.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22836655 22876485 - MGP_C3HHeJ_P0070168 Prkag2 protein_coding protein_coding MGP_C3HHeJ_T0070169.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22839048 22869593 - MGP_C3HHeJ_P0070169 Prkag2 protein_coding protein_coding MGP_C3HHeJ_T0070170.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22842386 22856386 - Prkag2 protein_coding retained_intron MGP_C3HHeJ_T0070171.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22842912 22876428 - Prkag2 protein_coding retained_intron MGP_C3HHeJ_T0070172.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22856394 22876951 - MGP_C3HHeJ_P0070172 Prkag2 protein_coding protein_coding MGP_C3HHeJ_T0070173.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22874206 22876426 - Prkag2 protein_coding processed_transcript MGP_C3HHeJ_T0014763.1 MGP_C3HHeJ_G0012867.1 mouse_genomes_project 5 32451563 32452020 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073654.1 MGP_C3HHeJ_G0029726.1 mouse_genomes_project 5 124365907 124394878 - MGP_C3HHeJ_P0073654 Aldh2 protein_coding protein_coding MGP_C3HHeJ_T0073655.1 MGP_C3HHeJ_G0029726.1 mouse_genomes_project 5 124367758 124371064 - Aldh2 protein_coding retained_intron MGP_C3HHeJ_T0073656.1 MGP_C3HHeJ_G0029726.1 mouse_genomes_project 5 124367759 124379543 - MGP_C3HHeJ_P0073656 Aldh2 protein_coding protein_coding MGP_C3HHeJ_T0073657.1 MGP_C3HHeJ_G0029726.1 mouse_genomes_project 5 124367837 124372715 - MGP_C3HHeJ_P0073657 Aldh2 protein_coding protein_coding MGP_C3HHeJ_T0073658.1 MGP_C3HHeJ_G0029726.1 mouse_genomes_project 5 124370197 124394634 - MGP_C3HHeJ_P0073658 Aldh2 protein_coding protein_coding MGP_C3HHeJ_T0073659.1 MGP_C3HHeJ_G0029726.1 mouse_genomes_project 5 124371348 124375004 - Aldh2 protein_coding retained_intron MGP_C3HHeJ_T0073660.1 MGP_C3HHeJ_G0029726.1 mouse_genomes_project 5 124376333 124394636 - MGP_C3HHeJ_P0073660 Aldh2 protein_coding protein_coding MGP_C3HHeJ_T0073247.1 MGP_C3HHeJ_G0029641.1 mouse_genomes_project 5 117012301 117044427 + MGP_C3HHeJ_P0073247 Ankrd13a protein_coding protein_coding MGP_C3HHeJ_T0073248.1 MGP_C3HHeJ_G0029641.1 mouse_genomes_project 5 117012569 117044795 + Ankrd13a protein_coding processed_transcript MGP_C3HHeJ_T0073249.1 MGP_C3HHeJ_G0029641.1 mouse_genomes_project 5 117023590 117042227 + MGP_C3HHeJ_P0073249 Ankrd13a protein_coding protein_coding MGP_C3HHeJ_T0073250.1 MGP_C3HHeJ_G0029641.1 mouse_genomes_project 5 117033290 117044795 + Ankrd13a protein_coding processed_transcript MGP_C3HHeJ_T0073251.1 MGP_C3HHeJ_G0029641.1 mouse_genomes_project 5 117038071 117044795 + Ankrd13a protein_coding processed_transcript MGP_C3HHeJ_T0073252.1 MGP_C3HHeJ_G0029641.1 mouse_genomes_project 5 117038185 117040178 + Ankrd13a protein_coding retained_intron MGP_C3HHeJ_T0074650.1 MGP_C3HHeJ_G0029889.1 mouse_genomes_project 5 139500027 139508415 + MGP_C3HHeJ_P0074650 Zp3 protein_coding protein_coding MGP_C3HHeJ_T0074651.1 MGP_C3HHeJ_G0029889.1 mouse_genomes_project 5 139500096 139507083 + MGP_C3HHeJ_P0074651 Zp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074394.1 MGP_C3HHeJ_G0029847.1 mouse_genomes_project 5 137515124 137555675 + MGP_C3HHeJ_P0074394 Gtf2ird2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074395.1 MGP_C3HHeJ_G0029847.1 mouse_genomes_project 5 137515309 137549503 + MGP_C3HHeJ_P0074395 Gtf2ird2 protein_coding protein_coding MGP_C3HHeJ_T0074396.1 MGP_C3HHeJ_G0029847.1 mouse_genomes_project 5 137529367 137529995 + Gtf2ird2 protein_coding processed_transcript MGP_C3HHeJ_T0074397.1 MGP_C3HHeJ_G0029847.1 mouse_genomes_project 5 137538007 137547565 + Gtf2ird2 protein_coding retained_intron MGP_C3HHeJ_T0074398.1 MGP_C3HHeJ_G0029847.1 mouse_genomes_project 5 137545459 137547963 + MGP_C3HHeJ_P0074398 Gtf2ird2 protein_coding protein_coding MGP_C3HHeJ_T0008376.1 MGP_C3HHeJ_G0006788.1 mouse_genomes_project 5 153913003 153922281 + Gm42788 lincRNA lincRNA MGP_C3HHeJ_T0075685.1 MGP_C3HHeJ_G0030103.1 mouse_genomes_project 5 154840851 154891361 + Rxfp2 protein_coding retained_intron MGP_C3HHeJ_T0075686.1 MGP_C3HHeJ_G0030103.1 mouse_genomes_project 5 154840851 154905200 + MGP_C3HHeJ_P0075686 Rxfp2 protein_coding protein_coding MGP_C3HHeJ_T0075687.1 MGP_C3HHeJ_G0030103.1 mouse_genomes_project 5 154840851 154905200 + MGP_C3HHeJ_P0075687 Rxfp2 protein_coding protein_coding MGP_C3HHeJ_T0075688.1 MGP_C3HHeJ_G0030103.1 mouse_genomes_project 5 154840882 154905192 + MGP_C3HHeJ_P0075688 Rxfp2 protein_coding protein_coding MGP_C3HHeJ_T0075689.1 MGP_C3HHeJ_G0030103.1 mouse_genomes_project 5 154889183 154892683 + Rxfp2 protein_coding retained_intron MGP_C3HHeJ_T0075690.1 MGP_C3HHeJ_G0030103.1 mouse_genomes_project 5 154904514 154906043 + Rxfp2 protein_coding processed_transcript MGP_C3HHeJ_T0008312.1 MGP_C3HHeJ_G0006739.1 mouse_genomes_project 5 131731221 131752726 - 5930412G12Rik lincRNA lincRNA MGP_C3HHeJ_T0008313.1 MGP_C3HHeJ_G0006739.1 mouse_genomes_project 5 131731221 131737475 - 5930412G12Rik lincRNA lincRNA MGP_C3HHeJ_T0008314.1 MGP_C3HHeJ_G0006739.1 mouse_genomes_project 5 131731243 131752726 - 5930412G12Rik lincRNA lincRNA MGP_C3HHeJ_T0008315.1 MGP_C3HHeJ_G0006739.1 mouse_genomes_project 5 131731293 131737475 - 5930412G12Rik lincRNA lincRNA MGP_C3HHeJ_T0008316.1 MGP_C3HHeJ_G0006739.1 mouse_genomes_project 5 131735201 131752732 - 5930412G12Rik lincRNA lincRNA MGP_C3HHeJ_T0008317.1 MGP_C3HHeJ_G0006739.1 mouse_genomes_project 5 131736312 131752693 - 5930412G12Rik lincRNA lincRNA MGP_C3HHeJ_T0001415.1 MGP_C3HHeJ_G0001345.1 mouse_genomes_project 5 10891711 10895618 + TEC TEC MGP_C3HHeJ_T0014761.1 MGP_C3HHeJ_G0012865.1 mouse_genomes_project 5 32065467 32065717 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098514.1 MGP_C3HHeJ_G0036717.1 mouse_genomes_project 5 148578134 148581258 + Dmrt1i sense_intronic sense_intronic MGP_C3HHeJ_T0098515.1 MGP_C3HHeJ_G0036717.1 mouse_genomes_project 5 148578736 148581215 + Dmrt1i sense_intronic sense_intronic MGP_C3HHeJ_T0098516.1 MGP_C3HHeJ_G0036717.1 mouse_genomes_project 5 148578736 148581215 + Dmrt1i sense_intronic sense_intronic MGP_C3HHeJ_T0014953.1 MGP_C3HHeJ_G0013057.1 mouse_genomes_project 5 117340265 117340637 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014744.1 MGP_C3HHeJ_G0012848.1 mouse_genomes_project 5 27646582 27646939 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072583.1 MGP_C3HHeJ_G0029505.1 mouse_genomes_project 5 105364992 105401777 - MGP_C3HHeJ_P0072583 Hsd17b11 protein_coding protein_coding MGP_C3HHeJ_T0072584.1 MGP_C3HHeJ_G0029505.1 mouse_genomes_project 5 105379915 105401696 - MGP_C3HHeJ_P0072584 Hsd17b11 protein_coding protein_coding MGP_C3HHeJ_T0001600.1 MGP_C3HHeJ_G0001525.1 mouse_genomes_project 5 65088137 65092115 - TEC TEC MGP_C3HHeJ_T0010580.1 MGP_C3HHeJ_G0008713.1 mouse_genomes_project 5 11330614 11330719 - Gm24054 miRNA miRNA MGP_C3HHeJ_T0010599.1 MGP_C3HHeJ_G0008732.1 mouse_genomes_project 5 64497398 64497476 + Mir574 miRNA miRNA MGP_C3HHeJ_T0014807.1 MGP_C3HHeJ_G0012911.1 mouse_genomes_project 5 56732765 56733396 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074182.1 MGP_C3HHeJ_G0029804.1 mouse_genomes_project 5 128443019 128444254 + MGP_C3HHeJ_P0074182 Gm10382 protein_coding protein_coding MGP_C3HHeJ_T0099438.1 MGP_C3HHeJ_G0037632.1 mouse_genomes_project 5 51359956 51360061 - Gm25601 snRNA snRNA MGP_C3HHeJ_T0074373.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134713130 134810009 - MGP_C3HHeJ_P0074373 Auts2 protein_coding protein_coding MGP_C3HHeJ_T0074374.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134713139 135811875 - Auts2 protein_coding processed_transcript MGP_C3HHeJ_T0074375.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134713611 135811188 - Auts2 protein_coding processed_transcript MGP_C3HHeJ_T0074376.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134714886 135315277 - Auts2 protein_coding processed_transcript MGP_C3HHeJ_T0074377.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134715118 134756690 - MGP_C3HHeJ_P0074377 Auts2 protein_coding protein_coding MGP_C3HHeJ_T0074378.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134715222 135810392 - Auts2 protein_coding processed_transcript MGP_C3HHeJ_T0074379.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134716135 134735817 - MGP_C3HHeJ_P0074379 Auts2 protein_coding protein_coding MGP_C3HHeJ_T0074380.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134721230 134731570 - Auts2 protein_coding processed_transcript MGP_C3HHeJ_T0074381.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134745306 134747055 - Auts2 protein_coding retained_intron MGP_C3HHeJ_T0074382.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134754992 134812331 - Auts2 protein_coding retained_intron MGP_C3HHeJ_T0074383.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134756407 134808758 - Auts2 protein_coding processed_transcript MGP_C3HHeJ_T0074384.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134808671 134812366 - Auts2 protein_coding retained_intron MGP_C3HHeJ_T0074385.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 135314669 135811328 - Auts2 protein_coding retained_intron MGP_C3HHeJ_T0074386.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 135315247 135712350 - MGP_C3HHeJ_P0074386 Auts2 protein_coding protein_coding MGP_C3HHeJ_T0074387.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 135810035 135810344 - MGP_C3HHeJ_P0074387 Auts2 protein_coding protein_coding MGP_C3HHeJ_T0070544.1 MGP_C3HHeJ_G0029121.1 mouse_genomes_project 5 29505036 29508731 - MGP_C3HHeJ_P0070544 Fndc4 protein_coding protein_coding MGP_C3HHeJ_T0070545.1 MGP_C3HHeJ_G0029121.1 mouse_genomes_project 5 29505680 29508666 - MGP_C3HHeJ_P0070545 Fndc4 protein_coding protein_coding MGP_C3HHeJ_T0070546.1 MGP_C3HHeJ_G0029121.1 mouse_genomes_project 5 29505680 29506508 - MGP_C3HHeJ_P0070546 Fndc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070547.1 MGP_C3HHeJ_G0029121.1 mouse_genomes_project 5 29506066 29506761 - Fndc4 protein_coding retained_intron MGP_C3HHeJ_T0070548.1 MGP_C3HHeJ_G0029121.1 mouse_genomes_project 5 29506480 29508228 - MGP_C3HHeJ_P0070548 Fndc4 protein_coding protein_coding MGP_C3HHeJ_T0070549.1 MGP_C3HHeJ_G0029121.1 mouse_genomes_project 5 29506880 29508054 - Fndc4 protein_coding retained_intron MGP_C3HHeJ_T0070550.1 MGP_C3HHeJ_G0029121.1 mouse_genomes_project 5 29507509 29508875 - MGP_C3HHeJ_P0070550 Fndc4 protein_coding protein_coding MGP_C3HHeJ_T0010655.1 MGP_C3HHeJ_G0008788.1 mouse_genomes_project 5 151917392 151917502 - Mir7k miRNA miRNA MGP_C3HHeJ_T0073486.1 MGP_C3HHeJ_G0029687.1 mouse_genomes_project 5 120502507 120540323 + MGP_C3HHeJ_P0073486 Tesc protein_coding protein_coding MGP_C3HHeJ_T0073487.1 MGP_C3HHeJ_G0029687.1 mouse_genomes_project 5 120502529 120540290 + MGP_C3HHeJ_P0073487 Tesc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073488.1 MGP_C3HHeJ_G0029687.1 mouse_genomes_project 5 120502634 120540315 + Tesc protein_coding retained_intron MGP_C3HHeJ_T0073489.1 MGP_C3HHeJ_G0029687.1 mouse_genomes_project 5 120510704 120540218 + Tesc protein_coding processed_transcript MGP_C3HHeJ_T0073490.1 MGP_C3HHeJ_G0029687.1 mouse_genomes_project 5 120516232 120532124 + Tesc protein_coding processed_transcript MGP_C3HHeJ_T0073491.1 MGP_C3HHeJ_G0029687.1 mouse_genomes_project 5 120516233 120524885 + Tesc protein_coding processed_transcript MGP_C3HHeJ_T0008124.1 MGP_C3HHeJ_G0006617.1 mouse_genomes_project 5 98050473 98063855 - Gm33370 lincRNA lincRNA MGP_C3HHeJ_T0008346.1 MGP_C3HHeJ_G0006763.1 mouse_genomes_project 5 147485540 147487967 + BC030343 lincRNA lincRNA MGP_C3HHeJ_T0073280.1 MGP_C3HHeJ_G0029649.1 mouse_genomes_project 5 117226740 117249767 - MGP_C3HHeJ_P0073280 Hnf1a protein_coding protein_coding MGP_C3HHeJ_T0073281.1 MGP_C3HHeJ_G0029649.1 mouse_genomes_project 5 117227821 117249544 - MGP_C3HHeJ_P0073281 Hnf1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073282.1 MGP_C3HHeJ_G0029649.1 mouse_genomes_project 5 117230341 117249544 - MGP_C3HHeJ_P0073282 Hnf1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073283.1 MGP_C3HHeJ_G0029649.1 mouse_genomes_project 5 117247403 117249794 - Hnf1a protein_coding retained_intron MGP_C3HHeJ_T0072127.1 MGP_C3HHeJ_G0029401.1 mouse_genomes_project 5 88870126 88870207 - MGP_C3HHeJ_P0072127 Gm11115 protein_coding protein_coding MGP_C3HHeJ_T0014784.1 MGP_C3HHeJ_G0012888.1 mouse_genomes_project 5 44320455 44321080 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007987.1 MGP_C3HHeJ_G0006513.1 mouse_genomes_project 5 24502966 24538255 - 4930584F24Rik lincRNA lincRNA MGP_C3HHeJ_T0007988.1 MGP_C3HHeJ_G0006513.1 mouse_genomes_project 5 24502968 24538280 - 4930584F24Rik lincRNA lincRNA MGP_C3HHeJ_T0007989.1 MGP_C3HHeJ_G0006513.1 mouse_genomes_project 5 24502970 24538244 - 4930584F24Rik lincRNA lincRNA MGP_C3HHeJ_T0007990.1 MGP_C3HHeJ_G0006513.1 mouse_genomes_project 5 24519884 24538255 - 4930584F24Rik lincRNA lincRNA MGP_C3HHeJ_T0072918.1 MGP_C3HHeJ_G0029581.1 mouse_genomes_project 5 112241426 112293604 + MGP_C3HHeJ_P0072918 Pole protein_coding protein_coding MGP_C3HHeJ_T0072919.1 MGP_C3HHeJ_G0029581.1 mouse_genomes_project 5 112241461 112246483 + MGP_C3HHeJ_P0072919 Pole protein_coding protein_coding MGP_C3HHeJ_T0072920.1 MGP_C3HHeJ_G0029581.1 mouse_genomes_project 5 112241497 112263431 + Pole protein_coding retained_intron MGP_C3HHeJ_T0072921.1 MGP_C3HHeJ_G0029581.1 mouse_genomes_project 5 112272487 112274617 + Pole protein_coding retained_intron MGP_C3HHeJ_T0072922.1 MGP_C3HHeJ_G0029581.1 mouse_genomes_project 5 112283612 112293581 + Pole protein_coding retained_intron MGP_C3HHeJ_T0072923.1 MGP_C3HHeJ_G0029581.1 mouse_genomes_project 5 112286895 112293583 + MGP_C3HHeJ_P0072923 Pole protein_coding protein_coding MGP_C3HHeJ_T0072924.1 MGP_C3HHeJ_G0029581.1 mouse_genomes_project 5 112289572 112293566 + Pole protein_coding retained_intron MGP_C3HHeJ_T0075156.1 MGP_C3HHeJ_G0029988.1 mouse_genomes_project 5 143771029 143781760 - MGP_C3HHeJ_P0075156 Tmem184a protein_coding protein_coding MGP_C3HHeJ_T0075157.1 MGP_C3HHeJ_G0029988.1 mouse_genomes_project 5 143773498 143783865 - MGP_C3HHeJ_P0075157 Tmem184a protein_coding protein_coding MGP_C3HHeJ_T0075158.1 MGP_C3HHeJ_G0029988.1 mouse_genomes_project 5 143775813 143776527 - Tmem184a protein_coding retained_intron MGP_C3HHeJ_T0075160.1 MGP_C3HHeJ_G0029988.1 mouse_genomes_project 5 143777036 143783624 - MGP_C3HHeJ_P0075160 Tmem184a protein_coding protein_coding MGP_C3HHeJ_T0075161.1 MGP_C3HHeJ_G0029988.1 mouse_genomes_project 5 143781524 143789365 - MGP_C3HHeJ_P0075161 Tmem184a protein_coding protein_coding MGP_C3HHeJ_T0070923.1 MGP_C3HHeJ_G0029179.1 mouse_genomes_project 5 34012778 34030274 - MGP_C3HHeJ_P0070923 Trmt44 protein_coding protein_coding MGP_C3HHeJ_T0070924.1 MGP_C3HHeJ_G0029179.1 mouse_genomes_project 5 34027695 34030255 - Trmt44 protein_coding retained_intron MGP_C3HHeJ_T0070925.1 MGP_C3HHeJ_G0029179.1 mouse_genomes_project 5 34027947 34029942 - MGP_C3HHeJ_P0070925 Trmt44 protein_coding protein_coding MGP_C3HHeJ_T0075266.1 MGP_C3HHeJ_G0030015.1 mouse_genomes_project 5 147046604 147075453 - MGP_C3HHeJ_P0075266 Fbxl18 protein_coding protein_coding MGP_C3HHeJ_T0075267.1 MGP_C3HHeJ_G0030015.1 mouse_genomes_project 5 147052199 147053308 - Fbxl18 protein_coding retained_intron MGP_C3HHeJ_T0075268.1 MGP_C3HHeJ_G0030015.1 mouse_genomes_project 5 147052212 147075270 - MGP_C3HHeJ_P0075268 Fbxl18 protein_coding protein_coding MGP_C3HHeJ_T0075269.1 MGP_C3HHeJ_G0030015.1 mouse_genomes_project 5 147052475 147052917 - Fbxl18 protein_coding processed_transcript MGP_C3HHeJ_T0075270.1 MGP_C3HHeJ_G0030015.1 mouse_genomes_project 5 147062703 147075453 - Fbxl18 protein_coding retained_intron MGP_C3HHeJ_T0004699.1 MGP_C3HHeJ_G0004051.1 mouse_genomes_project 5 112218603 112231207 + Gm15788 antisense antisense MGP_C3HHeJ_T0074202.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130716982 130738738 - MGP_C3HHeJ_P0074202 Slc15a4 protein_coding protein_coding MGP_C3HHeJ_T0074203.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130716985 130738548 - MGP_C3HHeJ_P0074203 Slc15a4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074204.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130716985 130738740 - MGP_C3HHeJ_P0074204 Slc15a4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074205.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130717974 130725984 - MGP_C3HHeJ_P0074205 Slc15a4 protein_coding protein_coding MGP_C3HHeJ_T0074206.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130723234 130754055 - MGP_C3HHeJ_P0074206 Slc15a4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074207.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130725085 130725911 - Slc15a4 protein_coding processed_transcript MGP_C3HHeJ_T0074208.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130725085 130725911 - Slc15a4 protein_coding processed_transcript MGP_C3HHeJ_T0074209.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130725111 130730656 - MGP_C3HHeJ_P0074209 Slc15a4 protein_coding protein_coding MGP_C3HHeJ_T0074210.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130725909 130738205 - Slc15a4 protein_coding processed_transcript MGP_C3HHeJ_T0074211.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130730097 130754072 - MGP_C3HHeJ_P0074211 Slc15a4 protein_coding protein_coding MGP_C3HHeJ_T0074212.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130735751 130738703 - Slc15a4 protein_coding retained_intron MGP_C3HHeJ_T0001705.1 MGP_C3HHeJ_G0001629.1 mouse_genomes_project 5 105425045 105427820 - TEC TEC MGP_C3HHeJ_T0098295.1 MGP_C3HHeJ_G0036507.1 mouse_genomes_project 5 92848042 92848171 - Gm22728 scaRNA scaRNA MGP_C3HHeJ_T0015001.1 MGP_C3HHeJ_G0013105.1 mouse_genomes_project 5 144464402 144464876 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001510.1 MGP_C3HHeJ_G0001437.1 mouse_genomes_project 5 44224016 44225516 + TEC TEC MGP_C3HHeJ_T0014922.1 MGP_C3HHeJ_G0013026.1 mouse_genomes_project 5 108915141 108915886 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001449.1 MGP_C3HHeJ_G0001378.1 mouse_genomes_project 5 26659864 26661550 + TEC TEC MGP_C3HHeJ_T0075483.1 MGP_C3HHeJ_G0030059.1 mouse_genomes_project 5 149456920 149463656 - MGP_C3HHeJ_P0075483 Zkscan14 protein_coding protein_coding MGP_C3HHeJ_T0075484.1 MGP_C3HHeJ_G0030059.1 mouse_genomes_project 5 149457597 149463645 - MGP_C3HHeJ_P0075484 Zkscan14 protein_coding protein_coding MGP_C3HHeJ_T0075485.1 MGP_C3HHeJ_G0030059.1 mouse_genomes_project 5 149461413 149463656 - MGP_C3HHeJ_P0075485 Zkscan14 protein_coding protein_coding MGP_C3HHeJ_T0008004.1 MGP_C3HHeJ_G0006523.1 mouse_genomes_project 5 31650848 31669800 - Gm20465 lincRNA lincRNA MGP_C3HHeJ_T0074143.1 MGP_C3HHeJ_G0029798.1 mouse_genomes_project 5 127838864 127866835 - MGP_C3HHeJ_P0074143 Ccdc92 protein_coding protein_coding MGP_C3HHeJ_T0074144.1 MGP_C3HHeJ_G0029798.1 mouse_genomes_project 5 127840339 127866301 - MGP_C3HHeJ_P0074144 Ccdc92 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074145.1 MGP_C3HHeJ_G0029798.1 mouse_genomes_project 5 127840515 127855999 - MGP_C3HHeJ_P0074145 Ccdc92 protein_coding protein_coding MGP_C3HHeJ_T0069661.1 MGP_C3HHeJ_G0028967.1 mouse_genomes_project 5 781240 782680 - protein_coding processed_transcript MGP_C3HHeJ_T0100710.1 MGP_C3HHeJ_G0038904.1 mouse_genomes_project 5 84084123 84084255 - Gm25765 snoRNA snoRNA MGP_C3HHeJ_T0001754.1 MGP_C3HHeJ_G0001678.1 mouse_genomes_project 5 121132003 121133023 + TEC TEC MGP_C3HHeJ_T0014841.1 MGP_C3HHeJ_G0012945.1 mouse_genomes_project 5 73335054 73336042 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001522.1 MGP_C3HHeJ_G0001449.1 mouse_genomes_project 5 47224552 47225941 + TEC TEC MGP_C3HHeJ_T0014690.1 MGP_C3HHeJ_G0012794.1 mouse_genomes_project 5 13383897 13384141 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073892.1 MGP_C3HHeJ_G0029758.1 mouse_genomes_project 5 126116890 126124687 + Setd1b protein_coding retained_intron MGP_C3HHeJ_T0073893.1 MGP_C3HHeJ_G0029758.1 mouse_genomes_project 5 126116890 126144383 + MGP_C3HHeJ_P0073893 Setd1b protein_coding protein_coding MGP_C3HHeJ_T0073894.1 MGP_C3HHeJ_G0029758.1 mouse_genomes_project 5 126116890 126143203 + MGP_C3HHeJ_P0073894 Setd1b protein_coding protein_coding MGP_C3HHeJ_T0073895.1 MGP_C3HHeJ_G0029758.1 mouse_genomes_project 5 126117655 126143203 + MGP_C3HHeJ_P0073895 Setd1b protein_coding protein_coding MGP_C3HHeJ_T0073896.1 MGP_C3HHeJ_G0029758.1 mouse_genomes_project 5 126138500 126156645 + Setd1b protein_coding retained_intron MGP_C3HHeJ_T0073897.1 MGP_C3HHeJ_G0029758.1 mouse_genomes_project 5 126139173 126139900 + MGP_C3HHeJ_P0073897 Setd1b protein_coding protein_coding MGP_C3HHeJ_T0017975.1 MGP_C3HHeJ_G0015377.1 mouse_genomes_project 5 153701558 153709126 - 1810059H22Rik processed_transcript lincRNA MGP_C3HHeJ_T0017976.1 MGP_C3HHeJ_G0015377.1 mouse_genomes_project 5 153702476 153704340 - 1810059H22Rik processed_transcript retained_intron MGP_C3HHeJ_T0017977.1 MGP_C3HHeJ_G0015377.1 mouse_genomes_project 5 153707517 153708620 - 1810059H22Rik processed_transcript lincRNA MGP_C3HHeJ_T0017978.1 MGP_C3HHeJ_G0015377.1 mouse_genomes_project 5 153707589 153719499 - 1810059H22Rik processed_transcript lincRNA MGP_C3HHeJ_T0017979.1 MGP_C3HHeJ_G0015377.1 mouse_genomes_project 5 153707808 153708596 - 1810059H22Rik processed_transcript retained_intron MGP_C3HHeJ_T0017980.1 MGP_C3HHeJ_G0015377.1 mouse_genomes_project 5 153708051 153713919 - 1810059H22Rik processed_transcript retained_intron MGP_C3HHeJ_T0017981.1 MGP_C3HHeJ_G0015377.1 mouse_genomes_project 5 153713586 153719513 - 1810059H22Rik processed_transcript lincRNA MGP_C3HHeJ_T0017982.1 MGP_C3HHeJ_G0015377.1 mouse_genomes_project 5 153714405 153719739 - 1810059H22Rik processed_transcript lincRNA MGP_C3HHeJ_T0075351.1 MGP_C3HHeJ_G0030033.1 mouse_genomes_project 5 147950972 147974035 - MGP_C3HHeJ_P0075351 Usp42 protein_coding protein_coding MGP_C3HHeJ_T0075352.1 MGP_C3HHeJ_G0030033.1 mouse_genomes_project 5 147954399 147956260 - Usp42 protein_coding processed_transcript MGP_C3HHeJ_T0075353.1 MGP_C3HHeJ_G0030033.1 mouse_genomes_project 5 147954414 147957834 - Usp42 protein_coding retained_intron MGP_C3HHeJ_T0075354.1 MGP_C3HHeJ_G0030033.1 mouse_genomes_project 5 147957050 147968681 - Usp42 protein_coding retained_intron MGP_C3HHeJ_T0075355.1 MGP_C3HHeJ_G0030033.1 mouse_genomes_project 5 147962299 147963592 - Usp42 protein_coding retained_intron MGP_C3HHeJ_T0004815.1 MGP_C3HHeJ_G0004132.1 mouse_genomes_project 5 151860383 151905824 - 2210019I11Rik antisense antisense MGP_C3HHeJ_T0004816.1 MGP_C3HHeJ_G0004132.1 mouse_genomes_project 5 151862546 151905805 - 2210019I11Rik antisense antisense MGP_C3HHeJ_T0004817.1 MGP_C3HHeJ_G0004132.1 mouse_genomes_project 5 151870462 151905298 - 2210019I11Rik antisense antisense MGP_C3HHeJ_T0074239.1 MGP_C3HHeJ_G0029817.1 mouse_genomes_project 5 132196228 132196815 + protein_coding processed_transcript MGP_C3HHeJ_T0074240.1 MGP_C3HHeJ_G0029817.1 mouse_genomes_project 5 132196298 132201223 + MGP_C3HHeJ_P0074240 protein_coding protein_coding MGP_C3HHeJ_T0102062.1 MGP_C3HHeJ_G0040027.1 mouse_genomes_project 5 153152892 153153622 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0075234.1 MGP_C3HHeJ_G0030008.1 mouse_genomes_project 5 146610442 146613053 + MGP_C3HHeJ_P0075234 Ap5z1 protein_coding protein_coding MGP_C3HHeJ_T0075235.1 MGP_C3HHeJ_G0030008.1 mouse_genomes_project 5 146610497 146619506 + Ap5z1 protein_coding processed_transcript MGP_C3HHeJ_T0075236.1 MGP_C3HHeJ_G0030008.1 mouse_genomes_project 5 146610542 146616607 + MGP_C3HHeJ_P0075236 Ap5z1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075237.1 MGP_C3HHeJ_G0030008.1 mouse_genomes_project 5 146610552 146626008 + MGP_C3HHeJ_P0075237 Ap5z1 protein_coding protein_coding MGP_C3HHeJ_T0075238.1 MGP_C3HHeJ_G0030008.1 mouse_genomes_project 5 146610559 146625100 + Ap5z1 protein_coding retained_intron MGP_C3HHeJ_T0075239.1 MGP_C3HHeJ_G0030008.1 mouse_genomes_project 5 146610572 146625352 + MGP_C3HHeJ_P0075239 Ap5z1 protein_coding protein_coding MGP_C3HHeJ_T0075240.1 MGP_C3HHeJ_G0030008.1 mouse_genomes_project 5 146621396 146623051 + Ap5z1 protein_coding retained_intron MGP_C3HHeJ_T0001416.1 MGP_C3HHeJ_G0001346.1 mouse_genomes_project 5 10936313 10938994 + TEC TEC MGP_C3HHeJ_T0014968.1 MGP_C3HHeJ_G0013072.1 mouse_genomes_project 5 125637668 125638067 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001561.1 MGP_C3HHeJ_G0001487.1 mouse_genomes_project 5 51255522 51258383 + TEC TEC MGP_C3HHeJ_T0004621.1 MGP_C3HHeJ_G0003993.1 mouse_genomes_project 5 51462138 51464128 + Gm43683 antisense antisense MGP_C3HHeJ_T0014677.1 MGP_C3HHeJ_G0012781.1 mouse_genomes_project 5 6518842 6519084 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004589.1 MGP_C3HHeJ_G0003969.1 mouse_genomes_project 5 32517610 32535121 + 4930557J02Rik antisense antisense MGP_C3HHeJ_T0098151.1 MGP_C3HHeJ_G0036363.1 mouse_genomes_project 5 121845158 121845275 + n-R5s175 rRNA rRNA MGP_C3HHeJ_T0100732.1 MGP_C3HHeJ_G0038926.1 mouse_genomes_project 5 151415856 151415927 + Gm25091 snoRNA snoRNA MGP_C3HHeJ_T0074623.1 MGP_C3HHeJ_G0029884.1 mouse_genomes_project 5 139267272 139279184 + MGP_C3HHeJ_P0074623 Mdh2 protein_coding protein_coding MGP_C3HHeJ_T0074624.1 MGP_C3HHeJ_G0029884.1 mouse_genomes_project 5 139267428 139269034 + Mdh2 protein_coding retained_intron MGP_C3HHeJ_T0074625.1 MGP_C3HHeJ_G0029884.1 mouse_genomes_project 5 139267454 139279191 + MGP_C3HHeJ_P0074625 Mdh2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074626.1 MGP_C3HHeJ_G0029884.1 mouse_genomes_project 5 139267469 139273407 + Mdh2 protein_coding retained_intron MGP_C3HHeJ_T0074627.1 MGP_C3HHeJ_G0029884.1 mouse_genomes_project 5 139267477 139276444 + MGP_C3HHeJ_P0074627 Mdh2 protein_coding protein_coding MGP_C3HHeJ_T0074628.1 MGP_C3HHeJ_G0029884.1 mouse_genomes_project 5 139267481 139275139 + MGP_C3HHeJ_P0074628 Mdh2 protein_coding protein_coding MGP_C3HHeJ_T0074629.1 MGP_C3HHeJ_G0029884.1 mouse_genomes_project 5 139267514 139272545 + Mdh2 protein_coding retained_intron MGP_C3HHeJ_T0001738.1 MGP_C3HHeJ_G0001662.1 mouse_genomes_project 5 117254159 117254717 + TEC TEC MGP_C3HHeJ_T0073519.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122703573 122789121 + MGP_C3HHeJ_P0073519 Rbm19 protein_coding protein_coding MGP_C3HHeJ_T0073520.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122703625 122706090 + Rbm19 protein_coding retained_intron MGP_C3HHeJ_T0073521.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122703628 122789119 + MGP_C3HHeJ_P0073521 Rbm19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073522.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122705704 122707402 + Rbm19 protein_coding retained_intron MGP_C3HHeJ_T0073523.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122745914 122789111 + Rbm19 protein_coding processed_transcript MGP_C3HHeJ_T0073524.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122751886 122788333 + Rbm19 protein_coding processed_transcript MGP_C3HHeJ_T0073525.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122757531 122776400 + Rbm19 protein_coding processed_transcript MGP_C3HHeJ_T0073526.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122759125 122789117 + Rbm19 protein_coding processed_transcript MGP_C3HHeJ_T0073527.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122762316 122788130 + Rbm19 protein_coding processed_transcript MGP_C3HHeJ_T0073528.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122764941 122788109 + Rbm19 protein_coding processed_transcript MGP_C3HHeJ_T0004613.1 MGP_C3HHeJ_G0003988.1 mouse_genomes_project 5 43278520 43298500 + Gm43507 antisense antisense MGP_C3HHeJ_T0004614.1 MGP_C3HHeJ_G0003988.1 mouse_genomes_project 5 43289462 43299911 + Gm43507 antisense antisense MGP_C3HHeJ_T0075050.1 MGP_C3HHeJ_G0029968.1 mouse_genomes_project 5 142530701 142550957 + MGP_C3HHeJ_P0075050 A430033K04Rik protein_coding protein_coding MGP_C3HHeJ_T0075051.1 MGP_C3HHeJ_G0029968.1 mouse_genomes_project 5 142530718 142562603 + MGP_C3HHeJ_P0075051 A430033K04Rik protein_coding protein_coding MGP_C3HHeJ_T0075052.1 MGP_C3HHeJ_G0029968.1 mouse_genomes_project 5 142530736 142558997 + MGP_C3HHeJ_P0075052 A430033K04Rik protein_coding protein_coding MGP_C3HHeJ_T0101236.1 MGP_C3HHeJ_G0039364.1 mouse_genomes_project 5 117082618 117083238 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0014830.1 MGP_C3HHeJ_G0012934.1 mouse_genomes_project 5 67103274 67103566 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014747.1 MGP_C3HHeJ_G0012851.1 mouse_genomes_project 5 27924267 27925627 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001495.1 MGP_C3HHeJ_G0001422.1 mouse_genomes_project 5 42557917 42558459 - TEC TEC MGP_C3HHeJ_T0011514.1 MGP_C3HHeJ_G0009647.1 mouse_genomes_project 5 114274045 114274180 - Gm27357 misc_RNA misc_RNA MGP_C3HHeJ_T0073269.1 MGP_C3HHeJ_G0029647.1 mouse_genomes_project 5 117198230 117214003 + MGP_C3HHeJ_P0073269 Oasl1 protein_coding protein_coding MGP_C3HHeJ_T0073270.1 MGP_C3HHeJ_G0029647.1 mouse_genomes_project 5 117198254 117214006 + MGP_C3HHeJ_P0073270 Oasl1 protein_coding protein_coding MGP_C3HHeJ_T0073271.1 MGP_C3HHeJ_G0029647.1 mouse_genomes_project 5 117198412 117210937 + Oasl1 protein_coding processed_transcript MGP_C3HHeJ_T0073272.1 MGP_C3HHeJ_G0029647.1 mouse_genomes_project 5 117198425 117211029 + Oasl1 protein_coding processed_transcript MGP_C3HHeJ_T0073273.1 MGP_C3HHeJ_G0029647.1 mouse_genomes_project 5 117204829 117208347 + Oasl1 protein_coding retained_intron MGP_C3HHeJ_T0073274.1 MGP_C3HHeJ_G0029647.1 mouse_genomes_project 5 117210986 117213778 + Oasl1 protein_coding processed_transcript MGP_C3HHeJ_T0075393.1 MGP_C3HHeJ_G0030042.1 mouse_genomes_project 5 148304257 148395859 + MGP_C3HHeJ_P0075393 Lmtk2 protein_coding protein_coding MGP_C3HHeJ_T0015025.1 MGP_C3HHeJ_G0013129.1 mouse_genomes_project 5 151961375 151961841 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008088.1 MGP_C3HHeJ_G0006586.1 mouse_genomes_project 5 75114428 75153753 + Gm19583 lincRNA lincRNA MGP_C3HHeJ_T0001849.1 MGP_C3HHeJ_G0001771.1 mouse_genomes_project 5 140078411 140085348 - TEC TEC MGP_C3HHeJ_T0070908.1 MGP_C3HHeJ_G0029174.1 mouse_genomes_project 5 33493546 33518917 + MGP_C3HHeJ_P0070908 Dok7 protein_coding protein_coding MGP_C3HHeJ_T0070909.1 MGP_C3HHeJ_G0029174.1 mouse_genomes_project 5 33493642 33518917 + MGP_C3HHeJ_P0070909 Dok7 protein_coding protein_coding MGP_C3HHeJ_T0070910.1 MGP_C3HHeJ_G0029174.1 mouse_genomes_project 5 33493668 33504603 + MGP_C3HHeJ_P0070910 Dok7 protein_coding protein_coding MGP_C3HHeJ_T0070911.1 MGP_C3HHeJ_G0029174.1 mouse_genomes_project 5 33493857 33525792 + MGP_C3HHeJ_P0070911 Dok7 protein_coding protein_coding MGP_C3HHeJ_T0070912.1 MGP_C3HHeJ_G0029174.1 mouse_genomes_project 5 33512910 33518917 + Dok7 protein_coding retained_intron MGP_C3HHeJ_T0074597.1 MGP_C3HHeJ_G0029879.1 mouse_genomes_project 5 139036885 139039998 - MGP_C3HHeJ_P0074597 Ccl24 protein_coding protein_coding MGP_C3HHeJ_T0074598.1 MGP_C3HHeJ_G0029879.1 mouse_genomes_project 5 139037528 139039998 - MGP_C3HHeJ_P0074598 Ccl24 protein_coding protein_coding MGP_C3HHeJ_T0073510.1 MGP_C3HHeJ_G0029693.1 mouse_genomes_project 5 122233837 122236830 + Tbx3 protein_coding retained_intron MGP_C3HHeJ_T0073511.1 MGP_C3HHeJ_G0029693.1 mouse_genomes_project 5 122233837 122247807 + MGP_C3HHeJ_P0073511 Tbx3 protein_coding protein_coding MGP_C3HHeJ_T0073512.1 MGP_C3HHeJ_G0029693.1 mouse_genomes_project 5 122234030 122247969 + MGP_C3HHeJ_P0073512 Tbx3 protein_coding protein_coding MGP_C3HHeJ_T0073513.1 MGP_C3HHeJ_G0029693.1 mouse_genomes_project 5 122234186 122247969 + MGP_C3HHeJ_P0073513 Tbx3 protein_coding protein_coding MGP_C3HHeJ_T0073514.1 MGP_C3HHeJ_G0029693.1 mouse_genomes_project 5 122238611 122243851 + Tbx3 protein_coding retained_intron MGP_C3HHeJ_T0073515.1 MGP_C3HHeJ_G0029693.1 mouse_genomes_project 5 122243469 122244053 + Tbx3 protein_coding processed_transcript MGP_C3HHeJ_T0001488.1 MGP_C3HHeJ_G0001415.1 mouse_genomes_project 5 41860838 41862050 + TEC TEC MGP_C3HHeJ_T0014998.1 MGP_C3HHeJ_G0013102.1 mouse_genomes_project 5 143196953 143198784 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075526.1 MGP_C3HHeJ_G0030073.1 mouse_genomes_project 5 151146122 151148129 - Gpr12 protein_coding retained_intron MGP_C3HHeJ_T0075527.1 MGP_C3HHeJ_G0030073.1 mouse_genomes_project 5 151146124 151148965 - MGP_C3HHeJ_P0075527 Gpr12 protein_coding protein_coding MGP_C3HHeJ_T0075528.1 MGP_C3HHeJ_G0030073.1 mouse_genomes_project 5 151146476 151148557 - MGP_C3HHeJ_P0075528 Gpr12 protein_coding protein_coding MGP_C3HHeJ_T0075529.1 MGP_C3HHeJ_G0030073.1 mouse_genomes_project 5 151147195 151148544 - MGP_C3HHeJ_P0075529 Gpr12 protein_coding protein_coding MGP_C3HHeJ_T0075530.1 MGP_C3HHeJ_G0030073.1 mouse_genomes_project 5 151147379 151148568 - MGP_C3HHeJ_P0075530 Gpr12 protein_coding protein_coding MGP_C3HHeJ_T0069910.1 MGP_C3HHeJ_G0029006.1 mouse_genomes_project 5 18405602 18534373 - MGP_C3HHeJ_P0069910 Phtf2 protein_coding protein_coding MGP_C3HHeJ_T0069911.1 MGP_C3HHeJ_G0029006.1 mouse_genomes_project 5 18406602 18420958 - MGP_C3HHeJ_P0069911 Phtf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069912.1 MGP_C3HHeJ_G0029006.1 mouse_genomes_project 5 18429230 18507355 - Phtf2 protein_coding processed_transcript MGP_C3HHeJ_T0069913.1 MGP_C3HHeJ_G0029006.1 mouse_genomes_project 5 18429233 18452420 - MGP_C3HHeJ_P0069913 Phtf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069914.1 MGP_C3HHeJ_G0029006.1 mouse_genomes_project 5 18435457 18534326 - Phtf2 protein_coding retained_intron MGP_C3HHeJ_T0069915.1 MGP_C3HHeJ_G0029006.1 mouse_genomes_project 5 18440012 18534327 - Phtf2 protein_coding retained_intron MGP_C3HHeJ_T0069916.1 MGP_C3HHeJ_G0029006.1 mouse_genomes_project 5 18452396 18534294 - MGP_C3HHeJ_P0069916 Phtf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007963.1 MGP_C3HHeJ_G0006497.1 mouse_genomes_project 5 13414773 13424382 - Gm3510 lincRNA lincRNA MGP_C3HHeJ_T0071019.1 MGP_C3HHeJ_G0029197.1 mouse_genomes_project 5 35435451 35462418 - MGP_C3HHeJ_P0071019 Wfs1 protein_coding protein_coding MGP_C3HHeJ_T0071020.1 MGP_C3HHeJ_G0029197.1 mouse_genomes_project 5 35435454 35462146 - MGP_C3HHeJ_P0071020 Wfs1 protein_coding protein_coding MGP_C3HHeJ_T0071021.1 MGP_C3HHeJ_G0029197.1 mouse_genomes_project 5 35437870 35447777 - MGP_C3HHeJ_P0071021 Wfs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014990.1 MGP_C3HHeJ_G0013094.1 mouse_genomes_project 5 141563070 141563822 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014700.1 MGP_C3HHeJ_G0012804.1 mouse_genomes_project 5 18229501 18229806 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070327.1 MGP_C3HHeJ_G0029089.1 mouse_genomes_project 5 28634955 28704422 - MGP_C3HHeJ_P0070327 Cib4 protein_coding protein_coding MGP_C3HHeJ_T0008117.1 MGP_C3HHeJ_G0006610.1 mouse_genomes_project 5 92523188 92527758 - Gm28271 lincRNA lincRNA MGP_C3HHeJ_T0071710.1 MGP_C3HHeJ_G0029315.1 mouse_genomes_project 5 72428742 72475869 - MGP_C3HHeJ_P0071710 Cnga1 protein_coding protein_coding MGP_C3HHeJ_T0071711.1 MGP_C3HHeJ_G0029315.1 mouse_genomes_project 5 72428742 72446448 - MGP_C3HHeJ_P0071711 Cnga1 protein_coding protein_coding MGP_C3HHeJ_T0071712.1 MGP_C3HHeJ_G0029315.1 mouse_genomes_project 5 72429161 72469445 - MGP_C3HHeJ_P0071712 Cnga1 protein_coding protein_coding MGP_C3HHeJ_T0071713.1 MGP_C3HHeJ_G0029315.1 mouse_genomes_project 5 72442427 72469450 - MGP_C3HHeJ_P0071713 Cnga1 protein_coding protein_coding MGP_C3HHeJ_T0071714.1 MGP_C3HHeJ_G0029315.1 mouse_genomes_project 5 72446322 72461217 - MGP_C3HHeJ_P0071714 Cnga1 protein_coding protein_coding MGP_C3HHeJ_T0071715.1 MGP_C3HHeJ_G0029315.1 mouse_genomes_project 5 72475388 72477398 - Cnga1 protein_coding retained_intron MGP_C3HHeJ_T0007966.1 MGP_C3HHeJ_G0006500.1 mouse_genomes_project 5 20164590 20168425 - Gm43657 lincRNA lincRNA MGP_C3HHeJ_T0014833.1 MGP_C3HHeJ_G0012937.1 mouse_genomes_project 5 69196277 69196869 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075061.1 MGP_C3HHeJ_G0029971.1 mouse_genomes_project 5 142892888 142912608 - MGP_C3HHeJ_P0075061 Pdgfa protein_coding protein_coding MGP_C3HHeJ_T0075062.1 MGP_C3HHeJ_G0029971.1 mouse_genomes_project 5 142893390 142912524 - MGP_C3HHeJ_P0075062 Pdgfa protein_coding protein_coding MGP_C3HHeJ_T0075063.1 MGP_C3HHeJ_G0029971.1 mouse_genomes_project 5 142893807 142914885 - MGP_C3HHeJ_P0075063 Pdgfa protein_coding protein_coding MGP_C3HHeJ_T0075064.1 MGP_C3HHeJ_G0029971.1 mouse_genomes_project 5 142893836 142916168 - MGP_C3HHeJ_P0075064 Pdgfa protein_coding protein_coding MGP_C3HHeJ_T0075065.1 MGP_C3HHeJ_G0029971.1 mouse_genomes_project 5 142894010 142911852 - Pdgfa protein_coding processed_transcript MGP_C3HHeJ_T0075066.1 MGP_C3HHeJ_G0029971.1 mouse_genomes_project 5 142903836 142912055 - Pdgfa protein_coding processed_transcript MGP_C3HHeJ_T0075067.1 MGP_C3HHeJ_G0029971.1 mouse_genomes_project 5 142906007 142914799 - Pdgfa protein_coding processed_transcript MGP_C3HHeJ_T0102054.1 MGP_C3HHeJ_G0040019.1 mouse_genomes_project 5 140582678 140584581 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100719.1 MGP_C3HHeJ_G0038913.1 mouse_genomes_project 5 101105423 101105499 + Gm26252 snoRNA snoRNA MGP_C3HHeJ_T0071481.1 MGP_C3HHeJ_G0029278.1 mouse_genomes_project 5 64964029 64988385 - MGP_C3HHeJ_P0071481 Ugdh protein_coding protein_coding MGP_C3HHeJ_T0071482.1 MGP_C3HHeJ_G0029278.1 mouse_genomes_project 5 64964032 64976299 - Ugdh protein_coding retained_intron MGP_C3HHeJ_T0071483.1 MGP_C3HHeJ_G0029278.1 mouse_genomes_project 5 64968360 64973655 - Ugdh protein_coding retained_intron MGP_C3HHeJ_T0071484.1 MGP_C3HHeJ_G0029278.1 mouse_genomes_project 5 64974192 64979007 - MGP_C3HHeJ_P0071484 Ugdh protein_coding protein_coding MGP_C3HHeJ_T0074183.1 MGP_C3HHeJ_G0029805.1 mouse_genomes_project 5 128468831 128489101 - MGP_C3HHeJ_P0074183 Dhx37 protein_coding protein_coding MGP_C3HHeJ_T0074184.1 MGP_C3HHeJ_G0029805.1 mouse_genomes_project 5 128469740 128470850 - MGP_C3HHeJ_P0074184 Dhx37 protein_coding protein_coding MGP_C3HHeJ_T0074185.1 MGP_C3HHeJ_G0029805.1 mouse_genomes_project 5 128471252 128473802 - Dhx37 protein_coding retained_intron MGP_C3HHeJ_T0074186.1 MGP_C3HHeJ_G0029805.1 mouse_genomes_project 5 128478515 128481708 - MGP_C3HHeJ_P0074186 Dhx37 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010611.1 MGP_C3HHeJ_G0008744.1 mouse_genomes_project 5 93608005 93608117 - Mir1961 miRNA miRNA MGP_C3HHeJ_T0017932.1 MGP_C3HHeJ_G0015362.1 mouse_genomes_project 5 65339625 65342510 - N4bp2os processed_transcript antisense MGP_C3HHeJ_T0017933.1 MGP_C3HHeJ_G0015362.1 mouse_genomes_project 5 65340079 65342001 - N4bp2os processed_transcript antisense MGP_C3HHeJ_T0017934.1 MGP_C3HHeJ_G0015362.1 mouse_genomes_project 5 65341016 65343023 - N4bp2os processed_transcript retained_intron MGP_C3HHeJ_T0004596.1 MGP_C3HHeJ_G0003976.1 mouse_genomes_project 5 34181612 34183543 + Gm15650 antisense antisense MGP_C3HHeJ_T0001520.1 MGP_C3HHeJ_G0001447.1 mouse_genomes_project 5 47099960 47102537 + TEC TEC MGP_C3HHeJ_T0074811.1 MGP_C3HHeJ_G0029917.1 mouse_genomes_project 5 140919453 140924194 - MGP_C3HHeJ_P0074811 Trip6 protein_coding protein_coding MGP_C3HHeJ_T0074812.1 MGP_C3HHeJ_G0029917.1 mouse_genomes_project 5 140922742 140923981 - MGP_C3HHeJ_P0074812 Trip6 protein_coding protein_coding MGP_C3HHeJ_T0074813.1 MGP_C3HHeJ_G0029917.1 mouse_genomes_project 5 140922769 140923952 - Trip6 protein_coding retained_intron MGP_C3HHeJ_T0074814.1 MGP_C3HHeJ_G0029917.1 mouse_genomes_project 5 140923148 140923998 - Trip6 protein_coding processed_transcript MGP_C3HHeJ_T0075750.1 MGP_C3HHeJ_G0030112.1 mouse_genomes_project 5 155957191 156319913 - MGP_C3HHeJ_P0075750 Gm42906 protein_coding protein_coding MGP_C3HHeJ_T0017992.1 MGP_C3HHeJ_G0015382.1 mouse_genomes_project 5 156255088 156268548 + processed_transcript retained_intron MGP_C3HHeJ_T0017993.1 MGP_C3HHeJ_G0015382.1 mouse_genomes_project 5 156255122 156282525 + processed_transcript lincRNA MGP_C3HHeJ_T0017994.1 MGP_C3HHeJ_G0015382.1 mouse_genomes_project 5 156255131 156305842 + processed_transcript lincRNA MGP_C3HHeJ_T0017995.1 MGP_C3HHeJ_G0015382.1 mouse_genomes_project 5 156286504 156305635 + processed_transcript lincRNA MGP_C3HHeJ_T0017996.1 MGP_C3HHeJ_G0015382.1 mouse_genomes_project 5 156292864 156330381 + processed_transcript lincRNA MGP_C3HHeJ_T0017997.1 MGP_C3HHeJ_G0015382.1 mouse_genomes_project 5 156292886 156322223 + processed_transcript lincRNA MGP_C3HHeJ_T0008159.1 MGP_C3HHeJ_G0006643.1 mouse_genomes_project 5 105927671 105961876 + D930016D06Rik lincRNA lincRNA MGP_C3HHeJ_T0008160.1 MGP_C3HHeJ_G0006643.1 mouse_genomes_project 5 105927805 105942721 + D930016D06Rik lincRNA lincRNA MGP_C3HHeJ_T0008161.1 MGP_C3HHeJ_G0006643.1 mouse_genomes_project 5 105945529 105957531 + D930016D06Rik lincRNA lincRNA MGP_C3HHeJ_T0008162.1 MGP_C3HHeJ_G0006643.1 mouse_genomes_project 5 105946075 105956938 + D930016D06Rik lincRNA lincRNA MGP_C3HHeJ_T0008163.1 MGP_C3HHeJ_G0006643.1 mouse_genomes_project 5 105946117 105961173 + D930016D06Rik lincRNA lincRNA MGP_C3HHeJ_T0001640.1 MGP_C3HHeJ_G0001565.1 mouse_genomes_project 5 68938716 68941107 - TEC TEC MGP_C3HHeJ_T0098502.1 MGP_C3HHeJ_G0036707.1 mouse_genomes_project 5 118970560 118972598 - sense_intronic sense_intronic MGP_C3HHeJ_T0072070.1 MGP_C3HHeJ_G0029387.1 mouse_genomes_project 5 88134330 88151619 - MGP_C3HHeJ_P0072070 Sult1e1 protein_coding protein_coding MGP_C3HHeJ_T0071131.1 MGP_C3HHeJ_G0029214.1 mouse_genomes_project 5 37181100 37197426 - MGP_C3HHeJ_P0071131 Zfp518b protein_coding protein_coding MGP_C3HHeJ_T0071132.1 MGP_C3HHeJ_G0029214.1 mouse_genomes_project 5 37181102 37197350 - MGP_C3HHeJ_P0071132 Zfp518b protein_coding protein_coding MGP_C3HHeJ_T0071133.1 MGP_C3HHeJ_G0029214.1 mouse_genomes_project 5 37186788 37197426 - MGP_C3HHeJ_P0071133 Zfp518b protein_coding protein_coding MGP_C3HHeJ_T0071134.1 MGP_C3HHeJ_G0029214.1 mouse_genomes_project 5 37187239 37197357 - MGP_C3HHeJ_P0071134 Zfp518b protein_coding protein_coding MGP_C3HHeJ_T0070336.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28829169 28837150 + MGP_C3HHeJ_P0070336 Cenpa protein_coding protein_coding MGP_C3HHeJ_T0070337.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28829289 28836698 + MGP_C3HHeJ_P0070337 Cenpa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070338.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28829304 28836635 + MGP_C3HHeJ_P0070338 Cenpa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070339.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28829327 28836729 + Cenpa protein_coding retained_intron MGP_C3HHeJ_T0070340.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28829335 28832164 + MGP_C3HHeJ_P0070340 Cenpa protein_coding protein_coding MGP_C3HHeJ_T0070341.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28829349 28836384 + MGP_C3HHeJ_P0070341 Cenpa protein_coding protein_coding MGP_C3HHeJ_T0070342.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28829352 28833085 + Cenpa protein_coding retained_intron MGP_C3HHeJ_T0070343.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28829366 28836729 + MGP_C3HHeJ_P0070343 Cenpa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070344.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28829390 28836706 + MGP_C3HHeJ_P0070344 Cenpa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070345.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28834274 28836522 + Cenpa protein_coding retained_intron MGP_C3HHeJ_T0073667.1 MGP_C3HHeJ_G0029729.1 mouse_genomes_project 5 124503475 124530397 + MGP_C3HHeJ_P0073667 Brap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073668.1 MGP_C3HHeJ_G0029729.1 mouse_genomes_project 5 124503502 124506874 + Brap protein_coding retained_intron MGP_C3HHeJ_T0073669.1 MGP_C3HHeJ_G0029729.1 mouse_genomes_project 5 124503628 124530403 + MGP_C3HHeJ_P0073669 Brap protein_coding protein_coding MGP_C3HHeJ_T0073670.1 MGP_C3HHeJ_G0029729.1 mouse_genomes_project 5 124504941 124518272 + MGP_C3HHeJ_P0073670 Brap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073671.1 MGP_C3HHeJ_G0029729.1 mouse_genomes_project 5 124504950 124508542 + MGP_C3HHeJ_P0073671 Brap protein_coding protein_coding MGP_C3HHeJ_T0073672.1 MGP_C3HHeJ_G0029729.1 mouse_genomes_project 5 124504980 124506606 + Brap protein_coding retained_intron MGP_C3HHeJ_T0073673.1 MGP_C3HHeJ_G0029729.1 mouse_genomes_project 5 124509426 124530402 + Brap protein_coding processed_transcript MGP_C3HHeJ_T0073674.1 MGP_C3HHeJ_G0029729.1 mouse_genomes_project 5 124525977 124530399 + Brap protein_coding retained_intron MGP_C3HHeJ_T0014715.1 MGP_C3HHeJ_G0012819.1 mouse_genomes_project 5 20503668 20504041 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008339.1 MGP_C3HHeJ_G0006757.1 mouse_genomes_project 5 143474579 143492608 + 4930500L23Rik lincRNA lincRNA MGP_C3HHeJ_T0014725.1 MGP_C3HHeJ_G0012829.1 mouse_genomes_project 5 21944406 21947266 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004680.1 MGP_C3HHeJ_G0004039.1 mouse_genomes_project 5 103166488 103175177 + Gm20548 antisense antisense MGP_C3HHeJ_T0004681.1 MGP_C3HHeJ_G0004039.1 mouse_genomes_project 5 103166514 103173255 + Gm20548 antisense antisense MGP_C3HHeJ_T0004682.1 MGP_C3HHeJ_G0004039.1 mouse_genomes_project 5 103166524 103173218 + Gm20548 antisense antisense MGP_C3HHeJ_T0004683.1 MGP_C3HHeJ_G0004039.1 mouse_genomes_project 5 103166530 103175388 + Gm20548 antisense antisense MGP_C3HHeJ_T0004684.1 MGP_C3HHeJ_G0004039.1 mouse_genomes_project 5 103169132 103173310 + Gm20548 antisense antisense MGP_C3HHeJ_T0001498.1 MGP_C3HHeJ_G0001425.1 mouse_genomes_project 5 42835550 42836365 + TEC TEC MGP_C3HHeJ_T0014917.1 MGP_C3HHeJ_G0013021.1 mouse_genomes_project 5 107913255 107914111 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072038.1 MGP_C3HHeJ_G0029372.1 mouse_genomes_project 5 87182138 87200542 - MGP_C3HHeJ_P0072038 Tmprss11b protein_coding protein_coding MGP_C3HHeJ_T0008039.1 MGP_C3HHeJ_G0006546.1 mouse_genomes_project 5 43036967 43052162 - Gm42985 lincRNA lincRNA MGP_C3HHeJ_T0071151.1 MGP_C3HHeJ_G0029220.1 mouse_genomes_project 5 40682949 40824143 + MGP_C3HHeJ_P0071151 Gm16223 protein_coding protein_coding MGP_C3HHeJ_T0001703.1 MGP_C3HHeJ_G0001627.1 mouse_genomes_project 5 104694641 104695777 + TEC TEC MGP_C3HHeJ_T0099497.1 MGP_C3HHeJ_G0037691.1 mouse_genomes_project 5 155412345 155412446 - Gm23641 snRNA snRNA MGP_C3HHeJ_T0072844.1 MGP_C3HHeJ_G0029561.1 mouse_genomes_project 5 110468610 110474282 - MGP_C3HHeJ_P0072844 Slc26a1 protein_coding protein_coding MGP_C3HHeJ_T0072845.1 MGP_C3HHeJ_G0029561.1 mouse_genomes_project 5 110469265 110473466 - MGP_C3HHeJ_P0072845 Slc26a1 protein_coding protein_coding MGP_C3HHeJ_T0072846.1 MGP_C3HHeJ_G0029561.1 mouse_genomes_project 5 110469282 110473466 - MGP_C3HHeJ_P0072846 Slc26a1 protein_coding protein_coding MGP_C3HHeJ_T0072847.1 MGP_C3HHeJ_G0029561.1 mouse_genomes_project 5 110470815 110473498 - MGP_C3HHeJ_P0072847 Slc26a1 protein_coding protein_coding MGP_C3HHeJ_T0074198.1 MGP_C3HHeJ_G0029809.1 mouse_genomes_project 5 130354711 130686349 + MGP_C3HHeJ_P0074198 Tmem132c protein_coding protein_coding MGP_C3HHeJ_T0074199.1 MGP_C3HHeJ_G0029809.1 mouse_genomes_project 5 130354729 130393784 + Tmem132c protein_coding processed_transcript MGP_C3HHeJ_T0074200.1 MGP_C3HHeJ_G0029809.1 mouse_genomes_project 5 130672069 130685423 + Tmem132c protein_coding processed_transcript MGP_C3HHeJ_T0074201.1 MGP_C3HHeJ_G0029809.1 mouse_genomes_project 5 130673820 130685043 + MGP_C3HHeJ_P0074201 Tmem132c protein_coding protein_coding MGP_C3HHeJ_T0014671.1 MGP_C3HHeJ_G0012775.1 mouse_genomes_project 5 4382002 4382588 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010612.1 MGP_C3HHeJ_G0008745.1 mouse_genomes_project 5 99669092 99669201 - Mir703 miRNA miRNA MGP_C3HHeJ_T0008151.1 MGP_C3HHeJ_G0006636.1 mouse_genomes_project 5 103018569 103024295 - Gm43271 lincRNA lincRNA MGP_C3HHeJ_T0007981.1 MGP_C3HHeJ_G0006508.1 mouse_genomes_project 5 22959768 22973334 + 1500035N22Rik lincRNA lincRNA MGP_C3HHeJ_T0001789.1 MGP_C3HHeJ_G0001713.1 mouse_genomes_project 5 127475294 127477346 + TEC TEC MGP_C3HHeJ_T0001790.1 MGP_C3HHeJ_G0001713.1 mouse_genomes_project 5 127476302 127477475 + TEC TEC MGP_C3HHeJ_T0071413.1 MGP_C3HHeJ_G0029265.1 mouse_genomes_project 5 63580324 63610948 + MGP_C3HHeJ_P0071413 Pgm1 protein_coding protein_coding MGP_C3HHeJ_T0071414.1 MGP_C3HHeJ_G0029265.1 mouse_genomes_project 5 63590696 63598901 + MGP_C3HHeJ_P0071414 Pgm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071415.1 MGP_C3HHeJ_G0029265.1 mouse_genomes_project 5 63594579 63596476 + Pgm1 protein_coding retained_intron MGP_C3HHeJ_T0071416.1 MGP_C3HHeJ_G0029265.1 mouse_genomes_project 5 63601334 63610761 + MGP_C3HHeJ_P0071416 Pgm1 protein_coding protein_coding MGP_C3HHeJ_T0099423.1 MGP_C3HHeJ_G0037617.1 mouse_genomes_project 5 20404888 20404953 - Gm24512 snRNA snRNA MGP_C3HHeJ_T0014858.1 MGP_C3HHeJ_G0012962.1 mouse_genomes_project 5 79763405 79763423 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008008.1 MGP_C3HHeJ_G0006527.1 mouse_genomes_project 5 33813644 33820445 + 4930478P22Rik lincRNA lincRNA MGP_C3HHeJ_T0008009.1 MGP_C3HHeJ_G0006527.1 mouse_genomes_project 5 33813656 33820681 + 4930478P22Rik lincRNA lincRNA MGP_C3HHeJ_T0008010.1 MGP_C3HHeJ_G0006527.1 mouse_genomes_project 5 33813662 33819907 + 4930478P22Rik lincRNA lincRNA MGP_C3HHeJ_T0070154.1 MGP_C3HHeJ_G0029051.1 mouse_genomes_project 5 22677502 22700986 - MGP_C3HHeJ_P0070154 Wdr86 protein_coding protein_coding MGP_C3HHeJ_T0070155.1 MGP_C3HHeJ_G0029051.1 mouse_genomes_project 5 22678029 22700939 - Wdr86 protein_coding retained_intron MGP_C3HHeJ_T0070156.1 MGP_C3HHeJ_G0029051.1 mouse_genomes_project 5 22678033 22679142 - Wdr86 protein_coding retained_intron MGP_C3HHeJ_T0070157.1 MGP_C3HHeJ_G0029051.1 mouse_genomes_project 5 22678402 22681346 - MGP_C3HHeJ_P0070157 Wdr86 protein_coding protein_coding MGP_C3HHeJ_T0073585.1 MGP_C3HHeJ_G0029711.1 mouse_genomes_project 5 123466382 123484192 - MGP_C3HHeJ_P0073585 protein_coding protein_coding MGP_C3HHeJ_T0010589.1 MGP_C3HHeJ_G0008722.1 mouse_genomes_project 5 33156741 33156861 - Mir467g miRNA miRNA MGP_C3HHeJ_T0014769.1 MGP_C3HHeJ_G0012873.1 mouse_genomes_project 5 35777134 35777285 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097910.1 MGP_C3HHeJ_G0036122.1 mouse_genomes_project 5 118396847 118397015 - pseudogene pseudogene MGP_C3HHeJ_T0073705.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124720712 124934252 - MGP_C3HHeJ_P0073705 protein_coding protein_coding MGP_C3HHeJ_T0073706.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124724441 124932226 - MGP_C3HHeJ_P0073706 protein_coding protein_coding MGP_C3HHeJ_T0073707.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124724533 124730406 - protein_coding retained_intron MGP_C3HHeJ_T0073708.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124724533 124798263 - MGP_C3HHeJ_P0073708 protein_coding protein_coding MGP_C3HHeJ_T0073709.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124738847 124740083 - protein_coding retained_intron MGP_C3HHeJ_T0073710.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124745573 124784674 - protein_coding processed_transcript MGP_C3HHeJ_T0073711.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124745579 124763365 - protein_coding processed_transcript MGP_C3HHeJ_T0073712.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124751987 124934503 - MGP_C3HHeJ_P0073712 protein_coding protein_coding MGP_C3HHeJ_T0073713.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124754654 124880403 - MGP_C3HHeJ_P0073713 protein_coding protein_coding MGP_C3HHeJ_T0073714.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124763392 124786335 - protein_coding processed_transcript MGP_C3HHeJ_T0073715.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124798237 124932292 - protein_coding processed_transcript MGP_C3HHeJ_T0099443.1 MGP_C3HHeJ_G0037637.1 mouse_genomes_project 5 69483012 69483138 - Gm26044 snRNA snRNA MGP_C3HHeJ_T0071670.1 MGP_C3HHeJ_G0029306.1 mouse_genomes_project 5 70717649 70868044 - MGP_C3HHeJ_P0071670 Gabra2 protein_coding protein_coding MGP_C3HHeJ_T0071671.1 MGP_C3HHeJ_G0029306.1 mouse_genomes_project 5 70719533 70868004 - MGP_C3HHeJ_P0071671 Gabra2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071672.1 MGP_C3HHeJ_G0029306.1 mouse_genomes_project 5 70725881 70785067 - Gabra2 protein_coding retained_intron MGP_C3HHeJ_T0071673.1 MGP_C3HHeJ_G0029306.1 mouse_genomes_project 5 70725987 70866841 - MGP_C3HHeJ_P0071673 Gabra2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071674.1 MGP_C3HHeJ_G0029306.1 mouse_genomes_project 5 70739126 70867401 - Gabra2 protein_coding processed_transcript MGP_C3HHeJ_T0071675.1 MGP_C3HHeJ_G0029306.1 mouse_genomes_project 5 70863950 70867066 - Gabra2 protein_coding retained_intron MGP_C3HHeJ_T0014925.1 MGP_C3HHeJ_G0013029.1 mouse_genomes_project 5 109541928 109542214 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001500.1 MGP_C3HHeJ_G0001427.1 mouse_genomes_project 5 43122689 43125959 - TEC TEC MGP_C3HHeJ_T0004674.1 MGP_C3HHeJ_G0004034.1 mouse_genomes_project 5 100895240 100897276 + 4930522N08Rik antisense antisense MGP_C3HHeJ_T0070414.1 MGP_C3HHeJ_G0029104.1 mouse_genomes_project 5 29236905 29241350 + MGP_C3HHeJ_P0070414 Atraid protein_coding protein_coding MGP_C3HHeJ_T0070415.1 MGP_C3HHeJ_G0029104.1 mouse_genomes_project 5 29236914 29244103 + Atraid protein_coding retained_intron MGP_C3HHeJ_T0070416.1 MGP_C3HHeJ_G0029104.1 mouse_genomes_project 5 29237228 29244109 + MGP_C3HHeJ_P0070416 Atraid protein_coding protein_coding MGP_C3HHeJ_T0070417.1 MGP_C3HHeJ_G0029104.1 mouse_genomes_project 5 29237238 29244107 + MGP_C3HHeJ_P0070417 Atraid protein_coding protein_coding MGP_C3HHeJ_T0070418.1 MGP_C3HHeJ_G0029104.1 mouse_genomes_project 5 29237241 29243479 + MGP_C3HHeJ_P0070418 Atraid protein_coding protein_coding MGP_C3HHeJ_T0070419.1 MGP_C3HHeJ_G0029104.1 mouse_genomes_project 5 29237252 29244104 + MGP_C3HHeJ_P0070419 Atraid protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070420.1 MGP_C3HHeJ_G0029104.1 mouse_genomes_project 5 29237315 29243830 + MGP_C3HHeJ_P0070420 Atraid protein_coding protein_coding MGP_C3HHeJ_T0070421.1 MGP_C3HHeJ_G0029104.1 mouse_genomes_project 5 29243355 29244109 + Atraid protein_coding processed_transcript MGP_C3HHeJ_T0004771.1 MGP_C3HHeJ_G0004100.1 mouse_genomes_project 5 131471704 131477703 + Gm42817 antisense antisense MGP_C3HHeJ_T0072138.1 MGP_C3HHeJ_G0029409.1 mouse_genomes_project 5 89213857 89291049 + MGP_C3HHeJ_P0072138 Rufy3 protein_coding protein_coding MGP_C3HHeJ_T0072139.1 MGP_C3HHeJ_G0029409.1 mouse_genomes_project 5 89213857 89299688 + MGP_C3HHeJ_P0072139 Rufy3 protein_coding protein_coding MGP_C3HHeJ_T0072140.1 MGP_C3HHeJ_G0029409.1 mouse_genomes_project 5 89232650 89289281 + MGP_C3HHeJ_P0072140 Rufy3 protein_coding protein_coding MGP_C3HHeJ_T0072141.1 MGP_C3HHeJ_G0029409.1 mouse_genomes_project 5 89232673 89291050 + MGP_C3HHeJ_P0072141 Rufy3 protein_coding protein_coding MGP_C3HHeJ_T0072142.1 MGP_C3HHeJ_G0029409.1 mouse_genomes_project 5 89232714 89235750 + Rufy3 protein_coding retained_intron MGP_C3HHeJ_T0072143.1 MGP_C3HHeJ_G0029409.1 mouse_genomes_project 5 89232715 89267547 + Rufy3 protein_coding retained_intron MGP_C3HHeJ_T0072144.1 MGP_C3HHeJ_G0029409.1 mouse_genomes_project 5 89232931 89289282 + MGP_C3HHeJ_P0072144 Rufy3 protein_coding protein_coding MGP_C3HHeJ_T0072145.1 MGP_C3HHeJ_G0029409.1 mouse_genomes_project 5 89295044 89296672 + Rufy3 protein_coding retained_intron MGP_C3HHeJ_T0099420.1 MGP_C3HHeJ_G0037614.1 mouse_genomes_project 5 17725137 17725241 + Gm23570 snRNA snRNA MGP_C3HHeJ_T0014847.1 MGP_C3HHeJ_G0012951.1 mouse_genomes_project 5 75354695 75356085 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102033.1 MGP_C3HHeJ_G0039998.1 mouse_genomes_project 5 68256578 68282738 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0069730.1 MGP_C3HHeJ_G0028976.1 mouse_genomes_project 5 2719496 2759007 - MGP_C3HHeJ_P0069730 Steap2 protein_coding protein_coding MGP_C3HHeJ_T0069731.1 MGP_C3HHeJ_G0028976.1 mouse_genomes_project 5 2719498 2747578 - MGP_C3HHeJ_P0069731 Steap2 protein_coding protein_coding MGP_C3HHeJ_T0069732.1 MGP_C3HHeJ_G0028976.1 mouse_genomes_project 5 2720621 2758489 - MGP_C3HHeJ_P0069732 Steap2 protein_coding protein_coding MGP_C3HHeJ_T0069733.1 MGP_C3HHeJ_G0028976.1 mouse_genomes_project 5 2735452 2758481 - MGP_C3HHeJ_P0069733 Steap2 protein_coding protein_coding MGP_C3HHeJ_T0069734.1 MGP_C3HHeJ_G0028976.1 mouse_genomes_project 5 2736005 2758496 - MGP_C3HHeJ_P0069734 Steap2 protein_coding protein_coding MGP_C3HHeJ_T0069735.1 MGP_C3HHeJ_G0028976.1 mouse_genomes_project 5 2736239 2741800 - Steap2 protein_coding processed_transcript MGP_C3HHeJ_T0069736.1 MGP_C3HHeJ_G0028976.1 mouse_genomes_project 5 2736244 2758489 - MGP_C3HHeJ_P0069736 Steap2 protein_coding protein_coding MGP_C3HHeJ_T0069737.1 MGP_C3HHeJ_G0028976.1 mouse_genomes_project 5 2738019 2758755 - MGP_C3HHeJ_P0069737 Steap2 protein_coding protein_coding MGP_C3HHeJ_T0069738.1 MGP_C3HHeJ_G0028976.1 mouse_genomes_project 5 2740609 2758962 - Steap2 protein_coding retained_intron MGP_C3HHeJ_T0001609.1 MGP_C3HHeJ_G0001534.1 mouse_genomes_project 5 65451285 65451993 + TEC TEC MGP_C3HHeJ_T0074782.1 MGP_C3HHeJ_G0029913.1 mouse_genomes_project 5 140853132 140856742 - MGP_C3HHeJ_P0074782 protein_coding protein_coding MGP_C3HHeJ_T0074783.1 MGP_C3HHeJ_G0029913.1 mouse_genomes_project 5 140854359 140861469 - MGP_C3HHeJ_P0074783 protein_coding protein_coding MGP_C3HHeJ_T0075620.1 MGP_C3HHeJ_G0030092.1 mouse_genomes_project 5 153201667 153249662 - MGP_C3HHeJ_P0075620 Ubl3 protein_coding protein_coding MGP_C3HHeJ_T0075621.1 MGP_C3HHeJ_G0030092.1 mouse_genomes_project 5 153202161 153249789 - MGP_C3HHeJ_P0075621 Ubl3 protein_coding protein_coding MGP_C3HHeJ_T0075622.1 MGP_C3HHeJ_G0030092.1 mouse_genomes_project 5 153202174 153249789 - MGP_C3HHeJ_P0075622 Ubl3 protein_coding protein_coding MGP_C3HHeJ_T0075623.1 MGP_C3HHeJ_G0030092.1 mouse_genomes_project 5 153203013 153234586 - Ubl3 protein_coding processed_transcript MGP_C3HHeJ_T0075624.1 MGP_C3HHeJ_G0030092.1 mouse_genomes_project 5 153206297 153248650 - Ubl3 protein_coding processed_transcript MGP_C3HHeJ_T0075625.1 MGP_C3HHeJ_G0030092.1 mouse_genomes_project 5 153206307 153248642 - Ubl3 protein_coding processed_transcript MGP_C3HHeJ_T0075626.1 MGP_C3HHeJ_G0030092.1 mouse_genomes_project 5 153243570 153249698 - Ubl3 protein_coding retained_intron MGP_C3HHeJ_T0001526.1 MGP_C3HHeJ_G0001453.1 mouse_genomes_project 5 47693242 47695509 - TEC TEC MGP_C3HHeJ_T0074021.1 MGP_C3HHeJ_G0029779.1 mouse_genomes_project 5 127025631 127053331 - MGP_C3HHeJ_P0074021 Vps37b protein_coding protein_coding MGP_C3HHeJ_T0074022.1 MGP_C3HHeJ_G0029779.1 mouse_genomes_project 5 127027126 127032702 - Vps37b protein_coding processed_transcript MGP_C3HHeJ_T0074023.1 MGP_C3HHeJ_G0029779.1 mouse_genomes_project 5 127048802 127053319 - Vps37b protein_coding processed_transcript MGP_C3HHeJ_T0073097.1 MGP_C3HHeJ_G0029615.1 mouse_genomes_project 5 115741627 115780776 - MGP_C3HHeJ_P0073097 Cmklr1 protein_coding protein_coding MGP_C3HHeJ_T0073098.1 MGP_C3HHeJ_G0029615.1 mouse_genomes_project 5 115743304 115758229 - MGP_C3HHeJ_P0073098 Cmklr1 protein_coding protein_coding MGP_C3HHeJ_T0073099.1 MGP_C3HHeJ_G0029615.1 mouse_genomes_project 5 115744195 115774016 - MGP_C3HHeJ_P0073099 Cmklr1 protein_coding protein_coding MGP_C3HHeJ_T0073100.1 MGP_C3HHeJ_G0029615.1 mouse_genomes_project 5 115761922 115780746 - Cmklr1 protein_coding processed_transcript MGP_C3HHeJ_T0072753.1 MGP_C3HHeJ_G0029545.1 mouse_genomes_project 5 109614255 109624028 + MGP_C3HHeJ_P0072753 protein_coding protein_coding MGP_C3HHeJ_T0072754.1 MGP_C3HHeJ_G0029545.1 mouse_genomes_project 5 109614325 109616948 + protein_coding retained_intron MGP_C3HHeJ_T0072755.1 MGP_C3HHeJ_G0029545.1 mouse_genomes_project 5 109614628 109617653 + MGP_C3HHeJ_P0072755 protein_coding protein_coding MGP_C3HHeJ_T0072756.1 MGP_C3HHeJ_G0029545.1 mouse_genomes_project 5 109616093 109616710 + protein_coding retained_intron MGP_C3HHeJ_T0072757.1 MGP_C3HHeJ_G0029545.1 mouse_genomes_project 5 109616938 109623073 + protein_coding retained_intron MGP_C3HHeJ_T0072758.1 MGP_C3HHeJ_G0029545.1 mouse_genomes_project 5 109619411 109623078 + protein_coding retained_intron MGP_C3HHeJ_T0099464.1 MGP_C3HHeJ_G0037658.1 mouse_genomes_project 5 98046275 98046470 + Gm24623 snRNA snRNA MGP_C3HHeJ_T0014859.1 MGP_C3HHeJ_G0012963.1 mouse_genomes_project 5 79834024 79835135 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070006.1 MGP_C3HHeJ_G0029025.1 mouse_genomes_project 5 20716712 20717474 - MGP_C3HHeJ_P0070006 Rpl10 protein_coding protein_coding MGP_C3HHeJ_T0004653.1 MGP_C3HHeJ_G0004021.1 mouse_genomes_project 5 87248805 87279581 + Gm16579 antisense antisense MGP_C3HHeJ_T0075304.1 MGP_C3HHeJ_G0030022.1 mouse_genomes_project 5 147448122 147461832 + MGP_C3HHeJ_P0075304 Zfp12 protein_coding protein_coding MGP_C3HHeJ_T0075305.1 MGP_C3HHeJ_G0030022.1 mouse_genomes_project 5 147448133 147462718 + MGP_C3HHeJ_P0075305 Zfp12 protein_coding protein_coding MGP_C3HHeJ_T0075306.1 MGP_C3HHeJ_G0030022.1 mouse_genomes_project 5 147448206 147461840 + MGP_C3HHeJ_P0075306 Zfp12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075307.1 MGP_C3HHeJ_G0030022.1 mouse_genomes_project 5 147448738 147453964 + MGP_C3HHeJ_P0075307 Zfp12 protein_coding protein_coding MGP_C3HHeJ_T0075308.1 MGP_C3HHeJ_G0030022.1 mouse_genomes_project 5 147453922 147458514 + Zfp12 protein_coding processed_transcript MGP_C3HHeJ_T0073441.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119545803 119707500 + MGP_C3HHeJ_P0073441 Taok3 protein_coding protein_coding MGP_C3HHeJ_T0073442.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119552627 119633410 + MGP_C3HHeJ_P0073442 Taok3 protein_coding protein_coding MGP_C3HHeJ_T0073443.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119563193 119625401 + Taok3 protein_coding retained_intron MGP_C3HHeJ_T0073444.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119563193 119707358 + MGP_C3HHeJ_P0073444 Taok3 protein_coding protein_coding MGP_C3HHeJ_T0073445.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119563200 119707502 + MGP_C3HHeJ_P0073445 Taok3 protein_coding protein_coding MGP_C3HHeJ_T0073446.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119563220 119671085 + Taok3 protein_coding retained_intron MGP_C3HHeJ_T0073447.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119563223 119683850 + MGP_C3HHeJ_P0073447 Taok3 protein_coding protein_coding MGP_C3HHeJ_T0073448.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119563246 119617527 + Taok3 protein_coding retained_intron MGP_C3HHeJ_T0073449.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119633391 119658217 + MGP_C3HHeJ_P0073449 Taok3 protein_coding protein_coding MGP_C3HHeJ_T0073450.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119670096 119706150 + MGP_C3HHeJ_P0073450 Taok3 protein_coding protein_coding MGP_C3HHeJ_T0098507.1 MGP_C3HHeJ_G0036711.1 mouse_genomes_project 5 134389165 134393856 - Gm43166 sense_intronic sense_intronic MGP_C3HHeJ_T0074504.1 MGP_C3HHeJ_G0029860.1 mouse_genomes_project 5 138352074 138363318 + MGP_C3HHeJ_P0074504 Wbscr27 protein_coding protein_coding MGP_C3HHeJ_T0074505.1 MGP_C3HHeJ_G0029860.1 mouse_genomes_project 5 138352079 138362404 + MGP_C3HHeJ_P0074505 Wbscr27 protein_coding protein_coding MGP_C3HHeJ_T0074506.1 MGP_C3HHeJ_G0029860.1 mouse_genomes_project 5 138352079 138362404 + MGP_C3HHeJ_P0074506 Wbscr27 protein_coding protein_coding MGP_C3HHeJ_T0074507.1 MGP_C3HHeJ_G0029860.1 mouse_genomes_project 5 138352091 138362404 + MGP_C3HHeJ_P0074507 Wbscr27 protein_coding protein_coding MGP_C3HHeJ_T0074508.1 MGP_C3HHeJ_G0029860.1 mouse_genomes_project 5 138352098 138361883 + MGP_C3HHeJ_P0074508 Wbscr27 protein_coding protein_coding MGP_C3HHeJ_T0074509.1 MGP_C3HHeJ_G0029860.1 mouse_genomes_project 5 138352112 138354131 + MGP_C3HHeJ_P0074509 Wbscr27 protein_coding protein_coding MGP_C3HHeJ_T0074510.1 MGP_C3HHeJ_G0029860.1 mouse_genomes_project 5 138352230 138361315 + MGP_C3HHeJ_P0074510 Wbscr27 protein_coding protein_coding MGP_C3HHeJ_T0074511.1 MGP_C3HHeJ_G0029860.1 mouse_genomes_project 5 138352490 138356984 + Wbscr27 protein_coding processed_transcript MGP_C3HHeJ_T0074512.1 MGP_C3HHeJ_G0029860.1 mouse_genomes_project 5 138361142 138361913 + MGP_C3HHeJ_P0074512 Wbscr27 protein_coding protein_coding MGP_C3HHeJ_T0001547.1 MGP_C3HHeJ_G0001473.1 mouse_genomes_project 5 48874348 48875498 - TEC TEC MGP_C3HHeJ_T0071417.1 MGP_C3HHeJ_G0029266.1 mouse_genomes_project 5 63641464 63658930 + MGP_C3HHeJ_P0071417 Tbc1d1 protein_coding protein_coding MGP_C3HHeJ_T0071418.1 MGP_C3HHeJ_G0029266.1 mouse_genomes_project 5 63644750 63846746 + MGP_C3HHeJ_P0071418 Tbc1d1 protein_coding protein_coding MGP_C3HHeJ_T0071419.1 MGP_C3HHeJ_G0029266.1 mouse_genomes_project 5 63645119 63846746 + MGP_C3HHeJ_P0071419 Tbc1d1 protein_coding protein_coding MGP_C3HHeJ_T0071420.1 MGP_C3HHeJ_G0029266.1 mouse_genomes_project 5 63645510 63659671 + Tbc1d1 protein_coding retained_intron MGP_C3HHeJ_T0071421.1 MGP_C3HHeJ_G0029266.1 mouse_genomes_project 5 63645510 63846746 + MGP_C3HHeJ_P0071421 Tbc1d1 protein_coding protein_coding MGP_C3HHeJ_T0071422.1 MGP_C3HHeJ_G0029266.1 mouse_genomes_project 5 63722923 63846746 + MGP_C3HHeJ_P0071422 Tbc1d1 protein_coding protein_coding MGP_C3HHeJ_T0071423.1 MGP_C3HHeJ_G0029266.1 mouse_genomes_project 5 63767538 63776855 + MGP_C3HHeJ_P0071423 Tbc1d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071424.1 MGP_C3HHeJ_G0029266.1 mouse_genomes_project 5 63790627 63846741 + Tbc1d1 protein_coding processed_transcript MGP_C3HHeJ_T0004720.1 MGP_C3HHeJ_G0004066.1 mouse_genomes_project 5 118374207 118380985 + Gm14508 antisense antisense MGP_C3HHeJ_T0074137.1 MGP_C3HHeJ_G0029797.1 mouse_genomes_project 5 127725023 127838750 + MGP_C3HHeJ_P0074137 Dnah10 protein_coding protein_coding MGP_C3HHeJ_T0074138.1 MGP_C3HHeJ_G0029797.1 mouse_genomes_project 5 127725023 127838755 + MGP_C3HHeJ_P0074138 Dnah10 protein_coding protein_coding MGP_C3HHeJ_T0074139.1 MGP_C3HHeJ_G0029797.1 mouse_genomes_project 5 127790630 127791061 + Dnah10 protein_coding processed_transcript MGP_C3HHeJ_T0074140.1 MGP_C3HHeJ_G0029797.1 mouse_genomes_project 5 127795450 127799952 + Dnah10 protein_coding processed_transcript MGP_C3HHeJ_T0074141.1 MGP_C3HHeJ_G0029797.1 mouse_genomes_project 5 127805076 127808300 + Dnah10 protein_coding retained_intron MGP_C3HHeJ_T0074142.1 MGP_C3HHeJ_G0029797.1 mouse_genomes_project 5 127808951 127838572 + Dnah10 protein_coding retained_intron MGP_C3HHeJ_T0073576.1 MGP_C3HHeJ_G0029708.1 mouse_genomes_project 5 123360091 123380431 - MGP_C3HHeJ_P0073576 Oas2 protein_coding protein_coding MGP_C3HHeJ_T0073577.1 MGP_C3HHeJ_G0029708.1 mouse_genomes_project 5 123360092 123380431 - MGP_C3HHeJ_P0073577 Oas2 protein_coding protein_coding MGP_C3HHeJ_T0073578.1 MGP_C3HHeJ_G0029708.1 mouse_genomes_project 5 123360094 123365336 - Oas2 protein_coding retained_intron MGP_C3HHeJ_T0073579.1 MGP_C3HHeJ_G0029708.1 mouse_genomes_project 5 123363044 123369148 - MGP_C3HHeJ_P0073579 Oas2 protein_coding protein_coding MGP_C3HHeJ_T0071868.1 MGP_C3HHeJ_G0029341.1 mouse_genomes_project 5 76211469 76224516 + Tmem165 protein_coding processed_transcript MGP_C3HHeJ_T0071869.1 MGP_C3HHeJ_G0029341.1 mouse_genomes_project 5 76211535 76239030 + MGP_C3HHeJ_P0071869 Tmem165 protein_coding protein_coding MGP_C3HHeJ_T0071870.1 MGP_C3HHeJ_G0029341.1 mouse_genomes_project 5 76229891 76235602 + Tmem165 protein_coding retained_intron MGP_C3HHeJ_T0071871.1 MGP_C3HHeJ_G0029341.1 mouse_genomes_project 5 76234566 76236477 + Tmem165 protein_coding processed_transcript MGP_C3HHeJ_T0007952.1 MGP_C3HHeJ_G0006488.1 mouse_genomes_project 5 49300 119103 + lincRNA lincRNA MGP_C3HHeJ_T0074261.1 MGP_C3HHeJ_G0029820.1 mouse_genomes_project 5 132791484 132818453 + MGP_C3HHeJ_P0074261 Mmp17 protein_coding protein_coding MGP_C3HHeJ_T0074262.1 MGP_C3HHeJ_G0029820.1 mouse_genomes_project 5 132804150 132809973 + Mmp17 protein_coding retained_intron MGP_C3HHeJ_T0001615.1 MGP_C3HHeJ_G0001540.1 mouse_genomes_project 5 65821551 65824501 + TEC TEC MGP_C3HHeJ_T0011496.1 MGP_C3HHeJ_G0009629.1 mouse_genomes_project 5 27834073 27834402 + Gm26346 misc_RNA misc_RNA MGP_C3HHeJ_T0100702.1 MGP_C3HHeJ_G0038896.1 mouse_genomes_project 5 61909676 61909808 - Gm24079 snoRNA snoRNA MGP_C3HHeJ_T0004626.1 MGP_C3HHeJ_G0003998.1 mouse_genomes_project 5 63404402 63405472 + Gm15819 antisense antisense MGP_C3HHeJ_T0069979.1 MGP_C3HHeJ_G0029021.1 mouse_genomes_project 5 19544966 19606642 - MGP_C3HHeJ_P0069979 Slc26a5 protein_coding protein_coding MGP_C3HHeJ_T0069980.1 MGP_C3HHeJ_G0029021.1 mouse_genomes_project 5 19544966 19603053 - MGP_C3HHeJ_P0069980 Slc26a5 protein_coding protein_coding MGP_C3HHeJ_T0069981.1 MGP_C3HHeJ_G0029021.1 mouse_genomes_project 5 19545329 19586840 - MGP_C3HHeJ_P0069981 Slc26a5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069982.1 MGP_C3HHeJ_G0029021.1 mouse_genomes_project 5 19545460 19586792 - MGP_C3HHeJ_P0069982 Slc26a5 protein_coding protein_coding MGP_C3HHeJ_T0069983.1 MGP_C3HHeJ_G0029021.1 mouse_genomes_project 5 19551951 19556769 - Slc26a5 protein_coding retained_intron MGP_C3HHeJ_T0001468.1 MGP_C3HHeJ_G0001395.1 mouse_genomes_project 5 31332898 31334147 + TEC TEC MGP_C3HHeJ_T0004635.1 MGP_C3HHeJ_G0004006.1 mouse_genomes_project 5 67070190 67080475 + Gm26756 antisense antisense MGP_C3HHeJ_T0004642.1 MGP_C3HHeJ_G0004012.1 mouse_genomes_project 5 73087839 73088711 + 1700071G01Rik antisense antisense MGP_C3HHeJ_T0001529.1 MGP_C3HHeJ_G0001456.1 mouse_genomes_project 5 47826963 47831152 - TEC TEC MGP_C3HHeJ_T0001530.1 MGP_C3HHeJ_G0001456.1 mouse_genomes_project 5 47830272 47830646 - TEC pseudogene MGP_C3HHeJ_T0014696.1 MGP_C3HHeJ_G0012800.1 mouse_genomes_project 5 16402404 16402932 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075127.1 MGP_C3HHeJ_G0029981.1 mouse_genomes_project 5 143347746 143358119 + MGP_C3HHeJ_P0075127 C130050O18Rik protein_coding protein_coding MGP_C3HHeJ_T0075128.1 MGP_C3HHeJ_G0029981.1 mouse_genomes_project 5 143348853 143358116 + MGP_C3HHeJ_P0075128 C130050O18Rik protein_coding protein_coding MGP_C3HHeJ_T0075129.1 MGP_C3HHeJ_G0029981.1 mouse_genomes_project 5 143348931 143358121 + MGP_C3HHeJ_P0075129 C130050O18Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001704.1 MGP_C3HHeJ_G0001628.1 mouse_genomes_project 5 105256368 105256685 - TEC TEC MGP_C3HHeJ_T0001794.1 MGP_C3HHeJ_G0001717.1 mouse_genomes_project 5 129546581 129547546 + TEC TEC MGP_C3HHeJ_T0072594.1 MGP_C3HHeJ_G0029508.1 mouse_genomes_project 5 105463797 105499570 - MGP_C3HHeJ_P0072594 Sparcl1 protein_coding protein_coding MGP_C3HHeJ_T0072595.1 MGP_C3HHeJ_G0029508.1 mouse_genomes_project 5 105478139 105499276 - MGP_C3HHeJ_P0072595 Sparcl1 protein_coding protein_coding MGP_C3HHeJ_T0069890.1 MGP_C3HHeJ_G0029002.1 mouse_genomes_project 5 15336865 15405199 - MGP_C3HHeJ_P0069890 Cd36 protein_coding protein_coding MGP_C3HHeJ_T0069891.1 MGP_C3HHeJ_G0029002.1 mouse_genomes_project 5 15337191 15391106 - MGP_C3HHeJ_P0069891 Cd36 protein_coding protein_coding MGP_C3HHeJ_T0069892.1 MGP_C3HHeJ_G0029002.1 mouse_genomes_project 5 15337542 15450352 - MGP_C3HHeJ_P0069892 Cd36 protein_coding protein_coding MGP_C3HHeJ_T0069893.1 MGP_C3HHeJ_G0029002.1 mouse_genomes_project 5 15337544 15405136 - MGP_C3HHeJ_P0069893 Cd36 protein_coding protein_coding MGP_C3HHeJ_T0069894.1 MGP_C3HHeJ_G0029002.1 mouse_genomes_project 5 15337661 15391127 - MGP_C3HHeJ_P0069894 Cd36 protein_coding protein_coding MGP_C3HHeJ_T0069895.1 MGP_C3HHeJ_G0029002.1 mouse_genomes_project 5 15369794 15450406 - MGP_C3HHeJ_P0069895 Cd36 protein_coding protein_coding MGP_C3HHeJ_T0014767.1 MGP_C3HHeJ_G0012871.1 mouse_genomes_project 5 34009649 34011436 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015015.1 MGP_C3HHeJ_G0013119.1 mouse_genomes_project 5 149706542 149706735 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100720.1 MGP_C3HHeJ_G0038914.1 mouse_genomes_project 5 101303575 101303658 - Gm26363 snoRNA snoRNA MGP_C3HHeJ_T0071279.1 MGP_C3HHeJ_G0029239.1 mouse_genomes_project 5 47227882 47278280 + 5730480H06Rik protein_coding processed_transcript MGP_C3HHeJ_T0071280.1 MGP_C3HHeJ_G0029239.1 mouse_genomes_project 5 47270399 47286904 + MGP_C3HHeJ_P0071280 5730480H06Rik protein_coding protein_coding MGP_C3HHeJ_T0071281.1 MGP_C3HHeJ_G0029239.1 mouse_genomes_project 5 47270399 47286904 + MGP_C3HHeJ_P0071281 5730480H06Rik protein_coding protein_coding MGP_C3HHeJ_T0071282.1 MGP_C3HHeJ_G0029239.1 mouse_genomes_project 5 47270503 47286905 + MGP_C3HHeJ_P0071282 5730480H06Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071283.1 MGP_C3HHeJ_G0029239.1 mouse_genomes_project 5 47272508 47293676 + MGP_C3HHeJ_P0071283 5730480H06Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071284.1 MGP_C3HHeJ_G0029239.1 mouse_genomes_project 5 47278193 47286615 + 5730480H06Rik protein_coding retained_intron MGP_C3HHeJ_T0071292.1 MGP_C3HHeJ_G0029239.1 mouse_genomes_project 5 47290895 47296300 + 5730480H06Rik protein_coding retained_intron MGP_C3HHeJ_T0071293.1 MGP_C3HHeJ_G0029239.1 mouse_genomes_project 5 47293635 47313359 + 5730480H06Rik protein_coding retained_intron MGP_C3HHeJ_T0071295.1 MGP_C3HHeJ_G0029239.1 mouse_genomes_project 5 47294722 47313388 + 5730480H06Rik protein_coding processed_transcript MGP_C3HHeJ_T0004616.1 MGP_C3HHeJ_G0003990.1 mouse_genomes_project 5 44302201 44307263 + 9630001P10Rik antisense antisense MGP_C3HHeJ_T0004617.1 MGP_C3HHeJ_G0003990.1 mouse_genomes_project 5 44302775 44308964 + 9630001P10Rik antisense antisense MGP_C3HHeJ_T0004618.1 MGP_C3HHeJ_G0003990.1 mouse_genomes_project 5 44302869 44307586 + 9630001P10Rik antisense antisense MGP_C3HHeJ_T0074306.1 MGP_C3HHeJ_G0029830.1 mouse_genomes_project 5 133124538 133170804 + MGP_C3HHeJ_P0074306 Vkorc1l1 protein_coding protein_coding MGP_C3HHeJ_T0074307.1 MGP_C3HHeJ_G0029830.1 mouse_genomes_project 5 133124677 133177313 + MGP_C3HHeJ_P0074307 Vkorc1l1 protein_coding protein_coding MGP_C3HHeJ_T0074308.1 MGP_C3HHeJ_G0029830.1 mouse_genomes_project 5 133124695 133173198 + MGP_C3HHeJ_P0074308 Vkorc1l1 protein_coding protein_coding MGP_C3HHeJ_T0074309.1 MGP_C3HHeJ_G0029830.1 mouse_genomes_project 5 133124742 133168818 + MGP_C3HHeJ_P0074309 Vkorc1l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074310.1 MGP_C3HHeJ_G0029830.1 mouse_genomes_project 5 133163583 133173099 + MGP_C3HHeJ_P0074310 Vkorc1l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001537.1 MGP_C3HHeJ_G0001463.1 mouse_genomes_project 5 47976127 47978586 - TEC TEC MGP_C3HHeJ_T0071016.1 MGP_C3HHeJ_G0029196.1 mouse_genomes_project 5 35336010 35423012 + MGP_C3HHeJ_P0071016 Ppp2r2c protein_coding protein_coding MGP_C3HHeJ_T0071017.1 MGP_C3HHeJ_G0029196.1 mouse_genomes_project 5 35336160 35398781 + MGP_C3HHeJ_P0071017 Ppp2r2c protein_coding protein_coding MGP_C3HHeJ_T0071018.1 MGP_C3HHeJ_G0029196.1 mouse_genomes_project 5 35407580 35408338 + Ppp2r2c protein_coding processed_transcript MGP_C3HHeJ_T0073933.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126522066 126536408 - MGP_C3HHeJ_P0073933 Diablo protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073935.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126524016 126536407 - MGP_C3HHeJ_P0073935 Diablo protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073936.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126524016 126536441 - MGP_C3HHeJ_P0073936 Diablo protein_coding protein_coding MGP_C3HHeJ_T0073937.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126524393 126537694 - MGP_C3HHeJ_P0073937 Diablo protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073938.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126528122 126536401 - MGP_C3HHeJ_P0073938 Diablo protein_coding protein_coding MGP_C3HHeJ_T0073939.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126528577 126536398 - MGP_C3HHeJ_P0073939 Diablo protein_coding protein_coding MGP_C3HHeJ_T0073940.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126530043 126536385 - MGP_C3HHeJ_P0073940 Diablo protein_coding protein_coding MGP_C3HHeJ_T0073941.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126530250 126535756 - Diablo protein_coding retained_intron MGP_C3HHeJ_T0073942.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126530351 126533067 - Diablo protein_coding retained_intron MGP_C3HHeJ_T0073943.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126536760 126537753 - Diablo protein_coding processed_transcript MGP_C3HHeJ_T0074778.1 MGP_C3HHeJ_G0029911.1 mouse_genomes_project 5 140713415 140725048 - MGP_C3HHeJ_P0074778 Trim56 protein_coding protein_coding MGP_C3HHeJ_T0074779.1 MGP_C3HHeJ_G0029911.1 mouse_genomes_project 5 140722864 140725050 - MGP_C3HHeJ_P0074779 Trim56 protein_coding protein_coding MGP_C3HHeJ_T0071744.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72906800 72993890 - MGP_C3HHeJ_P0071744 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071745.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72907141 72951012 - MGP_C3HHeJ_P0071745 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071746.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72907152 72960515 - Fryl protein_coding processed_transcript MGP_C3HHeJ_T0071747.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72908009 72994292 - Fryl protein_coding retained_intron MGP_C3HHeJ_T0071748.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72908020 73079000 - MGP_C3HHeJ_P0071748 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071749.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72924498 73082987 - MGP_C3HHeJ_P0071749 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071750.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72955017 73013054 - MGP_C3HHeJ_P0071750 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071751.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72961032 72964026 - Fryl protein_coding retained_intron MGP_C3HHeJ_T0071752.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72961135 73007926 - Fryl protein_coding processed_transcript MGP_C3HHeJ_T0071753.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72967396 72968327 - Fryl protein_coding retained_intron MGP_C3HHeJ_T0071754.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72985575 72986455 - Fryl protein_coding retained_intron MGP_C3HHeJ_T0071755.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72986645 72994014 - MGP_C3HHeJ_P0071755 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071756.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72995653 72998768 - Fryl protein_coding retained_intron MGP_C3HHeJ_T0071757.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 73023461 73024455 - MGP_C3HHeJ_P0071757 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071758.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 73025589 73100072 - Fryl protein_coding retained_intron MGP_C3HHeJ_T0071759.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 73034608 73047933 - MGP_C3HHeJ_P0071759 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071760.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 73046429 73050329 - MGP_C3HHeJ_P0071760 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071761.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 73047340 73191143 - Fryl protein_coding retained_intron MGP_C3HHeJ_T0071762.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 73078901 73124096 - MGP_C3HHeJ_P0071762 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071763.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 73126044 73191307 - Fryl protein_coding retained_intron MGP_C3HHeJ_T0099431.1 MGP_C3HHeJ_G0037625.1 mouse_genomes_project 5 32564760 32564863 + Gm25918 snRNA snRNA MGP_C3HHeJ_T0072239.1 MGP_C3HHeJ_G0029438.1 mouse_genomes_project 5 92728841 92744701 - Rchy1 protein_coding processed_transcript MGP_C3HHeJ_T0072240.1 MGP_C3HHeJ_G0029438.1 mouse_genomes_project 5 92728841 92745213 - MGP_C3HHeJ_P0072240 Rchy1 protein_coding protein_coding MGP_C3HHeJ_T0072241.1 MGP_C3HHeJ_G0029438.1 mouse_genomes_project 5 92728938 92744880 - MGP_C3HHeJ_P0072241 Rchy1 protein_coding protein_coding MGP_C3HHeJ_T0072242.1 MGP_C3HHeJ_G0029438.1 mouse_genomes_project 5 92732149 92734951 - Rchy1 protein_coding retained_intron MGP_C3HHeJ_T0072243.1 MGP_C3HHeJ_G0029438.1 mouse_genomes_project 5 92743826 92744871 - Rchy1 protein_coding retained_intron MGP_C3HHeJ_T0008025.1 MGP_C3HHeJ_G0006534.1 mouse_genomes_project 5 36850187 36855036 + 4930487D11Rik lincRNA lincRNA MGP_C3HHeJ_T0098497.1 MGP_C3HHeJ_G0036702.1 mouse_genomes_project 5 100712537 100713276 - Gm16227 sense_intronic sense_intronic MGP_C3HHeJ_T0014743.1 MGP_C3HHeJ_G0012847.1 mouse_genomes_project 5 26097374 26098670 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014905.1 MGP_C3HHeJ_G0013009.1 mouse_genomes_project 5 103492303 103493072 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100718.1 MGP_C3HHeJ_G0038912.1 mouse_genomes_project 5 100867977 100868109 + Gm25969 snoRNA snoRNA MGP_C3HHeJ_T0101222.1 MGP_C3HHeJ_G0039355.1 mouse_genomes_project 5 57165873 57166447 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0017935.1 MGP_C3HHeJ_G0015363.1 mouse_genomes_project 5 67114288 67121226 + C330024D21Rik processed_transcript retained_intron MGP_C3HHeJ_T0017936.1 MGP_C3HHeJ_G0015363.1 mouse_genomes_project 5 67114291 67128764 + C330024D21Rik processed_transcript lincRNA MGP_C3HHeJ_T0017937.1 MGP_C3HHeJ_G0015363.1 mouse_genomes_project 5 67114294 67128430 + C330024D21Rik processed_transcript lincRNA MGP_C3HHeJ_T0071135.1 MGP_C3HHeJ_G0029215.1 mouse_genomes_project 5 37220708 37399731 - MGP_C3HHeJ_P0071135 Clnk protein_coding protein_coding MGP_C3HHeJ_T0071136.1 MGP_C3HHeJ_G0029215.1 mouse_genomes_project 5 37220708 37399731 - MGP_C3HHeJ_P0071136 Clnk protein_coding protein_coding MGP_C3HHeJ_T0004731.1 MGP_C3HHeJ_G0004075.1 mouse_genomes_project 5 122126787 122131591 - Tbx3os1 antisense antisense MGP_C3HHeJ_T0004732.1 MGP_C3HHeJ_G0004075.1 mouse_genomes_project 5 122126790 122187421 - Tbx3os1 antisense antisense MGP_C3HHeJ_T0004733.1 MGP_C3HHeJ_G0004075.1 mouse_genomes_project 5 122126882 122127418 - Tbx3os1 antisense antisense MGP_C3HHeJ_T0004734.1 MGP_C3HHeJ_G0004075.1 mouse_genomes_project 5 122169746 122187498 - Tbx3os1 antisense antisense MGP_C3HHeJ_T0004735.1 MGP_C3HHeJ_G0004075.1 mouse_genomes_project 5 122170383 122187709 - Tbx3os1 antisense antisense MGP_C3HHeJ_T0004736.1 MGP_C3HHeJ_G0004075.1 mouse_genomes_project 5 122177212 122234535 - Tbx3os1 antisense antisense MGP_C3HHeJ_T0074311.1 MGP_C3HHeJ_G0029831.1 mouse_genomes_project 5 133179631 133194352 - MGP_C3HHeJ_P0074311 Gusb protein_coding protein_coding MGP_C3HHeJ_T0074312.1 MGP_C3HHeJ_G0029831.1 mouse_genomes_project 5 133179643 133194131 - MGP_C3HHeJ_P0074312 Gusb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074313.1 MGP_C3HHeJ_G0029831.1 mouse_genomes_project 5 133180201 133181263 - Gusb protein_coding retained_intron MGP_C3HHeJ_T0074314.1 MGP_C3HHeJ_G0029831.1 mouse_genomes_project 5 133189958 133194168 - MGP_C3HHeJ_P0074314 Gusb protein_coding protein_coding MGP_C3HHeJ_T0074315.1 MGP_C3HHeJ_G0029831.1 mouse_genomes_project 5 133190898 133194184 - MGP_C3HHeJ_P0074315 Gusb protein_coding protein_coding MGP_C3HHeJ_T0074316.1 MGP_C3HHeJ_G0029831.1 mouse_genomes_project 5 133190921 133194268 - Gusb protein_coding retained_intron MGP_C3HHeJ_T0008152.1 MGP_C3HHeJ_G0006637.1 mouse_genomes_project 5 103023817 103026082 + Gm43270 lincRNA lincRNA MGP_C3HHeJ_T0072217.1 MGP_C3HHeJ_G0029428.1 mouse_genomes_project 5 91531677 91536001 + Cxcl3 protein_coding retained_intron MGP_C3HHeJ_T0072218.1 MGP_C3HHeJ_G0029428.1 mouse_genomes_project 5 91531677 91534494 + MGP_C3HHeJ_P0072218 Cxcl3 protein_coding protein_coding MGP_C3HHeJ_T0015002.1 MGP_C3HHeJ_G0013106.1 mouse_genomes_project 5 144574963 144575367 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017986.1 MGP_C3HHeJ_G0015379.1 mouse_genomes_project 5 154143857 154209549 + Gm20488 processed_transcript processed_transcript MGP_C3HHeJ_T0008090.1 MGP_C3HHeJ_G0006588.1 mouse_genomes_project 5 75758457 75766798 + Gm43101 lincRNA lincRNA MGP_C3HHeJ_T0008091.1 MGP_C3HHeJ_G0006588.1 mouse_genomes_project 5 75765661 75766799 + Gm43101 lincRNA lincRNA MGP_C3HHeJ_T0072095.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88337072 88352287 + MGP_C3HHeJ_P0072095 Csn1s2a protein_coding protein_coding MGP_C3HHeJ_T0072096.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88337072 88352287 + MGP_C3HHeJ_P0072096 Csn1s2a protein_coding protein_coding MGP_C3HHeJ_T0072097.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88337072 88352188 + MGP_C3HHeJ_P0072097 Csn1s2a protein_coding protein_coding MGP_C3HHeJ_T0072098.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88337086 88352188 + MGP_C3HHeJ_P0072098 Csn1s2a protein_coding protein_coding MGP_C3HHeJ_T0072099.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88337087 88343095 + Csn1s2a protein_coding retained_intron MGP_C3HHeJ_T0072100.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88338289 88341315 + Csn1s2a protein_coding retained_intron MGP_C3HHeJ_T0072101.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88339972 88342906 + Csn1s2a protein_coding retained_intron MGP_C3HHeJ_T0072102.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88342115 88345367 + Csn1s2a protein_coding retained_intron MGP_C3HHeJ_T0072103.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88345337 88352266 + Csn1s2a protein_coding retained_intron MGP_C3HHeJ_T0072104.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88348649 88350586 + Csn1s2a protein_coding retained_intron MGP_C3HHeJ_T0073112.1 MGP_C3HHeJ_G0029619.1 mouse_genomes_project 5 115929677 115936771 + MGP_C3HHeJ_P0073112 Iscu protein_coding protein_coding MGP_C3HHeJ_T0073113.1 MGP_C3HHeJ_G0029619.1 mouse_genomes_project 5 115929732 115936756 + MGP_C3HHeJ_P0073113 Iscu protein_coding protein_coding MGP_C3HHeJ_T0073114.1 MGP_C3HHeJ_G0029619.1 mouse_genomes_project 5 115929732 115936281 + MGP_C3HHeJ_P0073114 Iscu protein_coding protein_coding MGP_C3HHeJ_T0073115.1 MGP_C3HHeJ_G0029619.1 mouse_genomes_project 5 115929747 115934025 + MGP_C3HHeJ_P0073115 Iscu protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073116.1 MGP_C3HHeJ_G0029619.1 mouse_genomes_project 5 115929934 115936497 + MGP_C3HHeJ_P0073116 Iscu protein_coding protein_coding MGP_C3HHeJ_T0073117.1 MGP_C3HHeJ_G0029619.1 mouse_genomes_project 5 115929954 115936428 + MGP_C3HHeJ_P0073117 Iscu protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073118.1 MGP_C3HHeJ_G0029619.1 mouse_genomes_project 5 115930783 115936324 + MGP_C3HHeJ_P0073118 Iscu protein_coding protein_coding MGP_C3HHeJ_T0014921.1 MGP_C3HHeJ_G0013025.1 mouse_genomes_project 5 108577432 108577675 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073460.1 MGP_C3HHeJ_G0029682.1 mouse_genomes_project 5 119793928 119803330 + Wsb2 protein_coding retained_intron MGP_C3HHeJ_T0073461.1 MGP_C3HHeJ_G0029682.1 mouse_genomes_project 5 119794019 119816391 + MGP_C3HHeJ_P0073461 Wsb2 protein_coding protein_coding MGP_C3HHeJ_T0073462.1 MGP_C3HHeJ_G0029682.1 mouse_genomes_project 5 119797577 119807465 + Wsb2 protein_coding processed_transcript MGP_C3HHeJ_T0073463.1 MGP_C3HHeJ_G0029682.1 mouse_genomes_project 5 119812193 119815164 + Wsb2 protein_coding retained_intron MGP_C3HHeJ_T0073464.1 MGP_C3HHeJ_G0029682.1 mouse_genomes_project 5 119812991 119815199 + Wsb2 protein_coding retained_intron MGP_C3HHeJ_T0010643.1 MGP_C3HHeJ_G0008776.1 mouse_genomes_project 5 141161263 141161378 - Mir6418 miRNA miRNA MGP_C3HHeJ_T0075018.1 MGP_C3HHeJ_G0029961.1 mouse_genomes_project 5 142089688 142104688 - MGP_C3HHeJ_P0075018 Gm43720 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075004.1 MGP_C3HHeJ_G0029957.1 mouse_genomes_project 5 142034584 142077933 + MGP_C3HHeJ_P0075004 protein_coding protein_coding MGP_C3HHeJ_T0071727.1 MGP_C3HHeJ_G0029318.1 mouse_genomes_project 5 72612899 72735060 - MGP_C3HHeJ_P0071727 Tec protein_coding protein_coding MGP_C3HHeJ_T0071728.1 MGP_C3HHeJ_G0029318.1 mouse_genomes_project 5 72612906 72735075 - MGP_C3HHeJ_P0071728 Tec protein_coding protein_coding MGP_C3HHeJ_T0071729.1 MGP_C3HHeJ_G0029318.1 mouse_genomes_project 5 72612917 72735012 - MGP_C3HHeJ_P0071729 Tec protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071730.1 MGP_C3HHeJ_G0029318.1 mouse_genomes_project 5 72612921 72735062 - MGP_C3HHeJ_P0071730 Tec protein_coding protein_coding MGP_C3HHeJ_T0071731.1 MGP_C3HHeJ_G0029318.1 mouse_genomes_project 5 72612921 72735099 - MGP_C3HHeJ_P0071731 Tec protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071732.1 MGP_C3HHeJ_G0029318.1 mouse_genomes_project 5 72612921 72648019 - MGP_C3HHeJ_P0071732 Tec protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071733.1 MGP_C3HHeJ_G0029318.1 mouse_genomes_project 5 72634807 72735065 - MGP_C3HHeJ_P0071733 Tec protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071734.1 MGP_C3HHeJ_G0029318.1 mouse_genomes_project 5 72686033 72735059 - Tec protein_coding retained_intron MGP_C3HHeJ_T0071735.1 MGP_C3HHeJ_G0029318.1 mouse_genomes_project 5 72686337 72707940 - MGP_C3HHeJ_P0071735 Tec protein_coding protein_coding MGP_C3HHeJ_T0014797.1 MGP_C3HHeJ_G0012901.1 mouse_genomes_project 5 53800789 53800943 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014997.1 MGP_C3HHeJ_G0013101.1 mouse_genomes_project 5 142518575 142519126 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001417.1 MGP_C3HHeJ_G0001347.1 mouse_genomes_project 5 10960652 10964681 + TEC TEC MGP_C3HHeJ_T0014926.1 MGP_C3HHeJ_G0013030.1 mouse_genomes_project 5 109724066 109724293 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008103.1 MGP_C3HHeJ_G0006599.1 mouse_genomes_project 5 77577836 77590635 + Gm42761 lincRNA lincRNA MGP_C3HHeJ_T0069897.1 MGP_C3HHeJ_G0029004.1 mouse_genomes_project 5 15842346 15936449 - MGP_C3HHeJ_P0069897 Gnai1 protein_coding protein_coding MGP_C3HHeJ_T0008093.1 MGP_C3HHeJ_G0006590.1 mouse_genomes_project 5 75864631 75867234 - Gm19590 lincRNA lincRNA MGP_C3HHeJ_T0004578.1 MGP_C3HHeJ_G0003961.1 mouse_genomes_project 5 26549816 27019300 + antisense antisense MGP_C3HHeJ_T0004579.1 MGP_C3HHeJ_G0003961.1 mouse_genomes_project 5 26558505 26795350 + antisense antisense MGP_C3HHeJ_T0014866.1 MGP_C3HHeJ_G0012970.1 mouse_genomes_project 5 87541684 87542744 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010603.1 MGP_C3HHeJ_G0008736.1 mouse_genomes_project 5 75183989 75184063 + Mir7025 miRNA miRNA MGP_C3HHeJ_T0075627.1 MGP_C3HHeJ_G0030093.1 mouse_genomes_project 5 153614787 153675341 - MGP_C3HHeJ_P0075627 Katnal1 protein_coding protein_coding MGP_C3HHeJ_T0075628.1 MGP_C3HHeJ_G0030093.1 mouse_genomes_project 5 153618882 153622277 - Katnal1 protein_coding retained_intron MGP_C3HHeJ_T0075629.1 MGP_C3HHeJ_G0030093.1 mouse_genomes_project 5 153619337 153675328 - MGP_C3HHeJ_P0075629 Katnal1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0075630.1 MGP_C3HHeJ_G0030093.1 mouse_genomes_project 5 153628772 153675694 - Katnal1 protein_coding processed_transcript MGP_C3HHeJ_T0075631.1 MGP_C3HHeJ_G0030093.1 mouse_genomes_project 5 153636746 153676013 - MGP_C3HHeJ_P0075631 Katnal1 protein_coding protein_coding MGP_C3HHeJ_T0075633.1 MGP_C3HHeJ_G0030093.1 mouse_genomes_project 5 153648990 153675322 - MGP_C3HHeJ_P0075633 Katnal1 protein_coding protein_coding MGP_C3HHeJ_T0075634.1 MGP_C3HHeJ_G0030093.1 mouse_genomes_project 5 153671314 153675359 - Katnal1 protein_coding processed_transcript MGP_C3HHeJ_T0070215.1 MGP_C3HHeJ_G0029065.1 mouse_genomes_project 5 25939388 25952120 + MGP_C3HHeJ_P0070215 Htr5a protein_coding protein_coding MGP_C3HHeJ_T0071641.1 MGP_C3HHeJ_G0029298.1 mouse_genomes_project 5 67585003 67605301 - MGP_C3HHeJ_P0071641 Gm21905 protein_coding protein_coding MGP_C3HHeJ_T0001411.1 MGP_C3HHeJ_G0001341.1 mouse_genomes_project 5 9395842 9405894 - TEC TEC MGP_C3HHeJ_T0075469.1 MGP_C3HHeJ_G0030056.1 mouse_genomes_project 5 149406856 149428157 - MGP_C3HHeJ_P0075469 Ptcd1 protein_coding protein_coding MGP_C3HHeJ_T0075470.1 MGP_C3HHeJ_G0030056.1 mouse_genomes_project 5 149426500 149428005 - MGP_C3HHeJ_P0075470 Ptcd1 protein_coding protein_coding MGP_C3HHeJ_T0004704.1 MGP_C3HHeJ_G0004056.1 mouse_genomes_project 5 114428476 114431745 - Gm20636 antisense antisense MGP_C3HHeJ_T0071059.1 MGP_C3HHeJ_G0029202.1 mouse_genomes_project 5 35933337 36211238 - MGP_C3HHeJ_P0071059 Stk32b protein_coding protein_coding MGP_C3HHeJ_T0001796.1 MGP_C3HHeJ_G0001719.1 mouse_genomes_project 5 130415141 130416223 + TEC TEC MGP_C3HHeJ_T0017990.1 MGP_C3HHeJ_G0015381.1 mouse_genomes_project 5 154719936 154727604 + Gm43451 processed_transcript lincRNA MGP_C3HHeJ_T0017991.1 MGP_C3HHeJ_G0015381.1 mouse_genomes_project 5 154726979 154727849 + Gm43451 processed_transcript retained_intron MGP_C3HHeJ_T0001486.1 MGP_C3HHeJ_G0001413.1 mouse_genomes_project 5 41731466 41735963 - TEC TEC MGP_C3HHeJ_T0008240.1 MGP_C3HHeJ_G0006691.1 mouse_genomes_project 5 118695631 118701442 + B230112J18Rik lincRNA lincRNA MGP_C3HHeJ_T0072628.1 MGP_C3HHeJ_G0029521.1 mouse_genomes_project 5 106863986 106951026 - MGP_C3HHeJ_P0072628 protein_coding protein_coding MGP_C3HHeJ_T0001534.1 MGP_C3HHeJ_G0001460.1 mouse_genomes_project 5 47912199 47914743 - TEC TEC MGP_C3HHeJ_T0001851.1 MGP_C3HHeJ_G0001773.1 mouse_genomes_project 5 142527130 142528600 + TEC TEC MGP_C3HHeJ_T0070761.1 MGP_C3HHeJ_G0029154.1 mouse_genomes_project 5 32292729 32321980 - MGP_C3HHeJ_P0070761 Nelfa protein_coding protein_coding MGP_C3HHeJ_T0070762.1 MGP_C3HHeJ_G0029154.1 mouse_genomes_project 5 32304983 32321817 - Nelfa protein_coding retained_intron MGP_C3HHeJ_T0074118.1 MGP_C3HHeJ_G0029794.1 mouse_genomes_project 5 127627311 127636164 - MGP_C3HHeJ_P0074118 Eif2b1 protein_coding protein_coding MGP_C3HHeJ_T0074119.1 MGP_C3HHeJ_G0029794.1 mouse_genomes_project 5 127628849 127632015 - Eif2b1 protein_coding retained_intron MGP_C3HHeJ_T0074120.1 MGP_C3HHeJ_G0029794.1 mouse_genomes_project 5 127630179 127636094 - MGP_C3HHeJ_P0074120 Eif2b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074121.1 MGP_C3HHeJ_G0029794.1 mouse_genomes_project 5 127630829 127636108 - MGP_C3HHeJ_P0074121 Eif2b1 protein_coding protein_coding MGP_C3HHeJ_T0074122.1 MGP_C3HHeJ_G0029794.1 mouse_genomes_project 5 127633898 127636025 - MGP_C3HHeJ_P0074122 Eif2b1 protein_coding protein_coding MGP_C3HHeJ_T0074123.1 MGP_C3HHeJ_G0029794.1 mouse_genomes_project 5 127635551 127636065 - MGP_C3HHeJ_P0074123 Eif2b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072995.1 MGP_C3HHeJ_G0029593.1 mouse_genomes_project 5 112875492 113279519 + MGP_C3HHeJ_P0072995 Ttc28 protein_coding protein_coding MGP_C3HHeJ_T0072996.1 MGP_C3HHeJ_G0029593.1 mouse_genomes_project 5 112875492 113279518 + MGP_C3HHeJ_P0072996 Ttc28 protein_coding protein_coding MGP_C3HHeJ_T0072997.1 MGP_C3HHeJ_G0029593.1 mouse_genomes_project 5 112875511 112911718 + Ttc28 protein_coding processed_transcript MGP_C3HHeJ_T0072998.1 MGP_C3HHeJ_G0029593.1 mouse_genomes_project 5 113215658 113219619 + Ttc28 protein_coding retained_intron MGP_C3HHeJ_T0072999.1 MGP_C3HHeJ_G0029593.1 mouse_genomes_project 5 113223440 113228780 + Ttc28 protein_coding processed_transcript MGP_C3HHeJ_T0073000.1 MGP_C3HHeJ_G0029593.1 mouse_genomes_project 5 113225641 113256317 + Ttc28 protein_coding retained_intron MGP_C3HHeJ_T0073373.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117904083 117963447 + MGP_C3HHeJ_P0073373 Gcn1l1 protein_coding protein_coding MGP_C3HHeJ_T0073374.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117904087 117962625 + MGP_C3HHeJ_P0073374 Gcn1l1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0073375.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117904101 117923070 + Gcn1l1 protein_coding retained_intron MGP_C3HHeJ_T0073376.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117904103 117920112 + Gcn1l1 protein_coding retained_intron MGP_C3HHeJ_T0073377.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117904105 117923579 + Gcn1l1 protein_coding retained_intron MGP_C3HHeJ_T0073378.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117904132 117906050 + Gcn1l1 protein_coding retained_intron MGP_C3HHeJ_T0073379.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117921228 117926250 + Gcn1l1 protein_coding processed_transcript MGP_C3HHeJ_T0073380.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117944871 117963441 + Gcn1l1 protein_coding processed_transcript MGP_C3HHeJ_T0073381.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117949013 117949790 + Gcn1l1 protein_coding retained_intron MGP_C3HHeJ_T0073382.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117951005 117952564 + Gcn1l1 protein_coding processed_transcript MGP_C3HHeJ_T0073383.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117954046 117955194 + Gcn1l1 protein_coding retained_intron MGP_C3HHeJ_T0075068.1 MGP_C3HHeJ_G0029972.1 mouse_genomes_project 5 142936408 143053602 - MGP_C3HHeJ_P0075068 Prkar1b protein_coding protein_coding MGP_C3HHeJ_T0075069.1 MGP_C3HHeJ_G0029972.1 mouse_genomes_project 5 142937765 142942912 - Prkar1b protein_coding processed_transcript MGP_C3HHeJ_T0075070.1 MGP_C3HHeJ_G0029972.1 mouse_genomes_project 5 142962486 143051736 - MGP_C3HHeJ_P0075070 Prkar1b protein_coding protein_coding MGP_C3HHeJ_T0075071.1 MGP_C3HHeJ_G0029972.1 mouse_genomes_project 5 142970697 143054074 - MGP_C3HHeJ_P0075071 Prkar1b protein_coding protein_coding MGP_C3HHeJ_T0075072.1 MGP_C3HHeJ_G0029972.1 mouse_genomes_project 5 142983183 143036834 - MGP_C3HHeJ_P0075072 Prkar1b protein_coding protein_coding MGP_C3HHeJ_T0075073.1 MGP_C3HHeJ_G0029972.1 mouse_genomes_project 5 143032673 143054491 - MGP_C3HHeJ_P0075073 Prkar1b protein_coding protein_coding MGP_C3HHeJ_T0075074.1 MGP_C3HHeJ_G0029972.1 mouse_genomes_project 5 143032700 143073763 - MGP_C3HHeJ_P0075074 Prkar1b protein_coding protein_coding MGP_C3HHeJ_T0075075.1 MGP_C3HHeJ_G0029972.1 mouse_genomes_project 5 143032766 143054298 - MGP_C3HHeJ_P0075075 Prkar1b protein_coding protein_coding MGP_C3HHeJ_T0075076.1 MGP_C3HHeJ_G0029972.1 mouse_genomes_project 5 143071815 143073719 - Prkar1b protein_coding processed_transcript MGP_C3HHeJ_T0072805.1 MGP_C3HHeJ_G0029556.1 mouse_genomes_project 5 110306064 110340850 - MGP_C3HHeJ_P0072805 Cplx1 protein_coding protein_coding MGP_C3HHeJ_T0072806.1 MGP_C3HHeJ_G0029556.1 mouse_genomes_project 5 110307768 110340826 - MGP_C3HHeJ_P0072806 Cplx1 protein_coding protein_coding MGP_C3HHeJ_T0075561.1 MGP_C3HHeJ_G0030082.1 mouse_genomes_project 5 151904261 151910129 + MGP_C3HHeJ_P0075561 Pdx1 protein_coding protein_coding MGP_C3HHeJ_T0072026.1 MGP_C3HHeJ_G0029367.1 mouse_genomes_project 5 86758617 86822863 - MGP_C3HHeJ_P0072026 Tmprss11c protein_coding protein_coding MGP_C3HHeJ_T0072027.1 MGP_C3HHeJ_G0029367.1 mouse_genomes_project 5 86758888 86822815 - MGP_C3HHeJ_P0072027 Tmprss11c protein_coding protein_coding MGP_C3HHeJ_T0070717.1 MGP_C3HHeJ_G0029150.1 mouse_genomes_project 5 32039135 32061738 + MGP_C3HHeJ_P0070717 Tacc3 protein_coding protein_coding MGP_C3HHeJ_T0070718.1 MGP_C3HHeJ_G0029150.1 mouse_genomes_project 5 32039135 32054944 + MGP_C3HHeJ_P0070718 Tacc3 protein_coding protein_coding MGP_C3HHeJ_T0070719.1 MGP_C3HHeJ_G0029150.1 mouse_genomes_project 5 32039561 32046923 + MGP_C3HHeJ_P0070719 Tacc3 protein_coding protein_coding MGP_C3HHeJ_T0070720.1 MGP_C3HHeJ_G0029150.1 mouse_genomes_project 5 32039593 32054941 + MGP_C3HHeJ_P0070720 Tacc3 protein_coding protein_coding MGP_C3HHeJ_T0070721.1 MGP_C3HHeJ_G0029150.1 mouse_genomes_project 5 32039641 32043766 + Tacc3 protein_coding retained_intron MGP_C3HHeJ_T0070722.1 MGP_C3HHeJ_G0029150.1 mouse_genomes_project 5 32051297 32054944 + MGP_C3HHeJ_P0070722 Tacc3 protein_coding protein_coding MGP_C3HHeJ_T0070723.1 MGP_C3HHeJ_G0029150.1 mouse_genomes_project 5 32051360 32061728 + MGP_C3HHeJ_P0070723 Tacc3 protein_coding protein_coding MGP_C3HHeJ_T0069662.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 842968 869424 + Akap9 protein_coding retained_intron MGP_C3HHeJ_T0069663.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 843092 875639 + MGP_C3HHeJ_P0069663 Akap9 protein_coding protein_coding MGP_C3HHeJ_T0069664.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 843188 863567 + Akap9 protein_coding retained_intron MGP_C3HHeJ_T0069665.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 843188 1006374 + MGP_C3HHeJ_P0069665 Akap9 protein_coding protein_coding MGP_C3HHeJ_T0069666.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 865897 872314 + Akap9 protein_coding processed_transcript MGP_C3HHeJ_T0069667.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 865908 866489 + Akap9 protein_coding retained_intron MGP_C3HHeJ_T0069668.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 869373 872370 + Akap9 protein_coding retained_intron MGP_C3HHeJ_T0069669.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 889231 898562 + Akap9 protein_coding retained_intron MGP_C3HHeJ_T0069670.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 892873 893789 + MGP_C3HHeJ_P0069670 Akap9 protein_coding protein_coding MGP_C3HHeJ_T0069671.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 959650 961812 + Akap9 protein_coding retained_intron MGP_C3HHeJ_T0069672.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 983815 985491 + Akap9 protein_coding retained_intron MGP_C3HHeJ_T0069673.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 988936 989939 + MGP_C3HHeJ_P0069673 Akap9 protein_coding protein_coding MGP_C3HHeJ_T0069674.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 989058 989537 + Akap9 protein_coding retained_intron MGP_C3HHeJ_T0069675.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 989858 995518 + MGP_C3HHeJ_P0069675 Akap9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069676.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 992047 992517 + Akap9 protein_coding retained_intron MGP_C3HHeJ_T0075020.1 MGP_C3HHeJ_G0029962.1 mouse_genomes_project 5 142098384 142104735 - MGP_C3HHeJ_P0075020 Gpc2 protein_coding protein_coding MGP_C3HHeJ_T0075021.1 MGP_C3HHeJ_G0029962.1 mouse_genomes_project 5 142098386 142104715 - Gpc2 protein_coding retained_intron MGP_C3HHeJ_T0075022.1 MGP_C3HHeJ_G0029962.1 mouse_genomes_project 5 142098386 142104692 - Gpc2 protein_coding retained_intron MGP_C3HHeJ_T0075023.1 MGP_C3HHeJ_G0029962.1 mouse_genomes_project 5 142098386 142104712 - MGP_C3HHeJ_P0075023 Gpc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075024.1 MGP_C3HHeJ_G0029962.1 mouse_genomes_project 5 142098389 142104695 - MGP_C3HHeJ_P0075024 Gpc2 protein_coding protein_coding MGP_C3HHeJ_T0075025.1 MGP_C3HHeJ_G0029962.1 mouse_genomes_project 5 142100257 142102967 - Gpc2 protein_coding retained_intron MGP_C3HHeJ_T0075026.1 MGP_C3HHeJ_G0029962.1 mouse_genomes_project 5 142101370 142104693 - Gpc2 protein_coding processed_transcript MGP_C3HHeJ_T0073641.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124313154 124341792 - MGP_C3HHeJ_P0073641 Mapkapk5 protein_coding protein_coding MGP_C3HHeJ_T0073642.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124313164 124341087 - MGP_C3HHeJ_P0073642 Mapkapk5 protein_coding protein_coding MGP_C3HHeJ_T0073643.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124313168 124315374 - Mapkapk5 protein_coding retained_intron MGP_C3HHeJ_T0073644.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124313168 124313955 - Mapkapk5 protein_coding retained_intron MGP_C3HHeJ_T0073645.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124313168 124315307 - MGP_C3HHeJ_P0073645 Mapkapk5 protein_coding protein_coding MGP_C3HHeJ_T0073646.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124313172 124333614 - Mapkapk5 protein_coding processed_transcript MGP_C3HHeJ_T0073647.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124313261 124341087 - MGP_C3HHeJ_P0073647 Mapkapk5 protein_coding protein_coding MGP_C3HHeJ_T0073648.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124313261 124341087 - MGP_C3HHeJ_P0073648 Mapkapk5 protein_coding protein_coding MGP_C3HHeJ_T0073649.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124313880 124341087 - Mapkapk5 protein_coding processed_transcript MGP_C3HHeJ_T0073650.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124314676 124327533 - Mapkapk5 protein_coding retained_intron MGP_C3HHeJ_T0073651.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124329074 124331744 - MGP_C3HHeJ_P0073651 Mapkapk5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073652.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124329269 124341118 - MGP_C3HHeJ_P0073652 Mapkapk5 protein_coding protein_coding MGP_C3HHeJ_T0073653.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124330358 124333077 - Mapkapk5 protein_coding processed_transcript MGP_C3HHeJ_T0001804.1 MGP_C3HHeJ_G0001727.1 mouse_genomes_project 5 132760026 132762254 + TEC TEC MGP_C3HHeJ_T0015011.1 MGP_C3HHeJ_G0013115.1 mouse_genomes_project 5 148632972 148633185 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001418.1 MGP_C3HHeJ_G0001348.1 mouse_genomes_project 5 11015044 11017243 + TEC TEC MGP_C3HHeJ_T0008260.1 MGP_C3HHeJ_G0006708.1 mouse_genomes_project 5 122407790 122411260 - Gm43050 lincRNA lincRNA MGP_C3HHeJ_T0008261.1 MGP_C3HHeJ_G0006708.1 mouse_genomes_project 5 122410369 122411131 - Gm43050 lincRNA lincRNA MGP_C3HHeJ_T0001435.1 MGP_C3HHeJ_G0001365.1 mouse_genomes_project 5 18821816 18822763 + TEC TEC MGP_C3HHeJ_T0004601.1 MGP_C3HHeJ_G0003981.1 mouse_genomes_project 5 37251547 37264987 + Clnkos antisense antisense MGP_C3HHeJ_T0004602.1 MGP_C3HHeJ_G0003981.1 mouse_genomes_project 5 37251548 37264987 + Clnkos antisense antisense MGP_C3HHeJ_T0015019.1 MGP_C3HHeJ_G0013123.1 mouse_genomes_project 5 150421757 150422568 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001592.1 MGP_C3HHeJ_G0001517.1 mouse_genomes_project 5 64321204 64322926 + TEC TEC MGP_C3HHeJ_T0100721.1 MGP_C3HHeJ_G0038915.1 mouse_genomes_project 5 102116170 102116304 + Gm26286 snoRNA snoRNA MGP_C3HHeJ_T0001453.1 MGP_C3HHeJ_G0001382.1 mouse_genomes_project 5 29063137 29066480 + TEC TEC MGP_C3HHeJ_T0015026.1 MGP_C3HHeJ_G0013130.1 mouse_genomes_project 5 152049818 152053764 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001863.1 MGP_C3HHeJ_G0001785.1 mouse_genomes_project 5 148015026 148021395 + TEC TEC MGP_C3HHeJ_T0011508.1 MGP_C3HHeJ_G0009641.1 mouse_genomes_project 5 111468248 111468333 + Gm28000 misc_RNA misc_RNA MGP_C3HHeJ_T0004709.1 MGP_C3HHeJ_G0004058.1 mouse_genomes_project 5 115775320 115776040 + Gm15736 antisense antisense MGP_C3HHeJ_T0008200.1 MGP_C3HHeJ_G0006667.1 mouse_genomes_project 5 113589878 113590547 + Gm42489 lincRNA lincRNA MGP_C3HHeJ_T0100727.1 MGP_C3HHeJ_G0038921.1 mouse_genomes_project 5 120758931 120759063 + Gm25076 snoRNA snoRNA MGP_C3HHeJ_T0008112.1 MGP_C3HHeJ_G0006605.1 mouse_genomes_project 5 88478104 88483479 + BC037156 lincRNA lincRNA MGP_C3HHeJ_T0008349.1 MGP_C3HHeJ_G0006766.1 mouse_genomes_project 5 148001676 148010783 + D130017N08Rik lincRNA lincRNA MGP_C3HHeJ_T0008350.1 MGP_C3HHeJ_G0006766.1 mouse_genomes_project 5 148003183 148012123 + D130017N08Rik lincRNA lincRNA MGP_C3HHeJ_T0008352.1 MGP_C3HHeJ_G0006766.1 mouse_genomes_project 5 148011283 148013563 + D130017N08Rik lincRNA lincRNA MGP_C3HHeJ_T0008132.1 MGP_C3HHeJ_G0006624.1 mouse_genomes_project 5 99746464 99761063 - 1700010H22Rik lincRNA lincRNA MGP_C3HHeJ_T0008133.1 MGP_C3HHeJ_G0006624.1 mouse_genomes_project 5 99756904 99761141 - 1700010H22Rik lincRNA lincRNA MGP_C3HHeJ_T0008134.1 MGP_C3HHeJ_G0006624.1 mouse_genomes_project 5 99758325 99760899 - 1700010H22Rik lincRNA lincRNA MGP_C3HHeJ_T0004743.1 MGP_C3HHeJ_G0004081.1 mouse_genomes_project 5 124161334 124162955 + Gm42918 antisense antisense MGP_C3HHeJ_T0001664.1 MGP_C3HHeJ_G0001588.1 mouse_genomes_project 5 75013798 75016645 - TEC TEC MGP_C3HHeJ_T0099448.1 MGP_C3HHeJ_G0037642.1 mouse_genomes_project 5 72843926 72844012 - Gm24776 snRNA snRNA MGP_C3HHeJ_T0008100.1 MGP_C3HHeJ_G0006596.1 mouse_genomes_project 5 77205924 77207706 - Gm42757 lincRNA lincRNA MGP_C3HHeJ_T0014863.1 MGP_C3HHeJ_G0012967.1 mouse_genomes_project 5 85105222 85106339 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007985.1 MGP_C3HHeJ_G0006512.1 mouse_genomes_project 5 23676084 23677534 + Gm43972 lincRNA lincRNA MGP_C3HHeJ_T0008232.1 MGP_C3HHeJ_G0006685.1 mouse_genomes_project 5 117667940 117669364 - 4930401G09Rik lincRNA lincRNA MGP_C3HHeJ_T0070366.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054531 29057045 + MGP_C3HHeJ_P0070366 Agbl5 protein_coding protein_coding MGP_C3HHeJ_T0070367.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054689 29062525 + MGP_C3HHeJ_P0070367 Agbl5 protein_coding protein_coding MGP_C3HHeJ_T0070368.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054772 29078455 + MGP_C3HHeJ_P0070368 Agbl5 protein_coding protein_coding MGP_C3HHeJ_T0070369.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054778 29059671 + Agbl5 protein_coding retained_intron MGP_C3HHeJ_T0070370.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054793 29078157 + Agbl5 protein_coding retained_intron MGP_C3HHeJ_T0070371.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054806 29061922 + Agbl5 protein_coding retained_intron MGP_C3HHeJ_T0070372.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054806 29078156 + MGP_C3HHeJ_P0070372 Agbl5 protein_coding protein_coding MGP_C3HHeJ_T0070373.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054811 29074977 + MGP_C3HHeJ_P0070373 Agbl5 protein_coding protein_coding MGP_C3HHeJ_T0070374.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054838 29078156 + MGP_C3HHeJ_P0070374 Agbl5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070375.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054843 29078156 + MGP_C3HHeJ_P0070375 Agbl5 protein_coding protein_coding MGP_C3HHeJ_T0070376.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054843 29074977 + MGP_C3HHeJ_P0070376 Agbl5 protein_coding protein_coding MGP_C3HHeJ_T0070377.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29055163 29057707 + MGP_C3HHeJ_P0070377 Agbl5 protein_coding protein_coding MGP_C3HHeJ_T0070378.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29056119 29058285 + Agbl5 protein_coding processed_transcript MGP_C3HHeJ_T0070379.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29060041 29061932 + Agbl5 protein_coding retained_intron MGP_C3HHeJ_T0070381.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29060976 29061953 + Agbl5 protein_coding retained_intron MGP_C3HHeJ_T0070382.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29061770 29077400 + MGP_C3HHeJ_P0070382 Agbl5 protein_coding protein_coding MGP_C3HHeJ_T0010610.1 MGP_C3HHeJ_G0008743.1 mouse_genomes_project 5 93277339 93277439 + Mir6415 miRNA miRNA MGP_C3HHeJ_T0001672.1 MGP_C3HHeJ_G0001596.1 mouse_genomes_project 5 82235004 82236012 + TEC TEC MGP_C3HHeJ_T0001858.1 MGP_C3HHeJ_G0001780.1 mouse_genomes_project 5 145414945 145417315 - TEC TEC MGP_C3HHeJ_T0014680.1 MGP_C3HHeJ_G0012784.1 mouse_genomes_project 5 7304828 7306293 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098490.1 MGP_C3HHeJ_G0036695.1 mouse_genomes_project 5 28978548 28981406 + Gm19409 sense_intronic sense_intronic MGP_C3HHeJ_T0098491.1 MGP_C3HHeJ_G0036696.1 mouse_genomes_project 5 32615807 32618508 - Gm15513 sense_intronic sense_intronic MGP_C3HHeJ_T0075492.1 MGP_C3HHeJ_G0030061.1 mouse_genomes_project 5 149496719 149513669 + MGP_C3HHeJ_P0075492 Zfp655 protein_coding protein_coding MGP_C3HHeJ_T0075493.1 MGP_C3HHeJ_G0030061.1 mouse_genomes_project 5 149496751 149513668 + MGP_C3HHeJ_P0075493 Zfp655 protein_coding protein_coding MGP_C3HHeJ_T0075494.1 MGP_C3HHeJ_G0030061.1 mouse_genomes_project 5 149496752 149503660 + MGP_C3HHeJ_P0075494 Zfp655 protein_coding protein_coding MGP_C3HHeJ_T0075495.1 MGP_C3HHeJ_G0030061.1 mouse_genomes_project 5 149496753 149503530 + MGP_C3HHeJ_P0075495 Zfp655 protein_coding protein_coding MGP_C3HHeJ_T0075496.1 MGP_C3HHeJ_G0030061.1 mouse_genomes_project 5 149498462 149503494 + MGP_C3HHeJ_P0075496 Zfp655 protein_coding protein_coding MGP_C3HHeJ_T0014838.1 MGP_C3HHeJ_G0012942.1 mouse_genomes_project 5 72213972 72214486 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073326.1 MGP_C3HHeJ_G0029659.1 mouse_genomes_project 5 117602933 117607243 - MGP_C3HHeJ_P0073326 Dynll1 protein_coding protein_coding MGP_C3HHeJ_T0073327.1 MGP_C3HHeJ_G0029659.1 mouse_genomes_project 5 117604245 117606907 - Dynll1 protein_coding retained_intron MGP_C3HHeJ_T0073328.1 MGP_C3HHeJ_G0029659.1 mouse_genomes_project 5 117604254 117605259 - Dynll1 protein_coding processed_transcript MGP_C3HHeJ_T0073329.1 MGP_C3HHeJ_G0029659.1 mouse_genomes_project 5 117604328 117607156 - MGP_C3HHeJ_P0073329 Dynll1 protein_coding protein_coding MGP_C3HHeJ_T0073330.1 MGP_C3HHeJ_G0029659.1 mouse_genomes_project 5 117605379 117607123 - Dynll1 protein_coding processed_transcript MGP_C3HHeJ_T0008264.1 MGP_C3HHeJ_G0006711.1 mouse_genomes_project 5 122938397 122944850 - Gm42654 lincRNA lincRNA MGP_C3HHeJ_T0008265.1 MGP_C3HHeJ_G0006711.1 mouse_genomes_project 5 122938405 122941441 - Gm42654 lincRNA lincRNA MGP_C3HHeJ_T0011502.1 MGP_C3HHeJ_G0009635.1 mouse_genomes_project 5 92769266 92769542 + Gm24113 misc_RNA misc_RNA MGP_C3HHeJ_T0001787.1 MGP_C3HHeJ_G0001711.1 mouse_genomes_project 5 127311875 127313481 - TEC TEC MGP_C3HHeJ_T0099416.1 MGP_C3HHeJ_G0037610.1 mouse_genomes_project 5 4279217 4279368 - Gm24525 snRNA snRNA MGP_C3HHeJ_T0001760.1 MGP_C3HHeJ_G0001684.1 mouse_genomes_project 5 122848728 122849862 + TEC TEC MGP_C3HHeJ_T0072121.1 MGP_C3HHeJ_G0029396.1 mouse_genomes_project 5 88536361 88576729 + MGP_C3HHeJ_P0072121 Gm28434 protein_coding protein_coding MGP_C3HHeJ_T0098141.1 MGP_C3HHeJ_G0036353.1 mouse_genomes_project 5 35566462 35566565 - Gm25551 rRNA rRNA MGP_C3HHeJ_T0001814.1 MGP_C3HHeJ_G0001737.1 mouse_genomes_project 5 134881584 134883335 - TEC TEC MGP_C3HHeJ_T0070705.1 MGP_C3HHeJ_G0029148.1 mouse_genomes_project 5 32013415 32033353 - MGP_C3HHeJ_P0070705 Slbp protein_coding protein_coding MGP_C3HHeJ_T0070706.1 MGP_C3HHeJ_G0029148.1 mouse_genomes_project 5 32018859 32022058 - Slbp protein_coding retained_intron MGP_C3HHeJ_T0070707.1 MGP_C3HHeJ_G0029148.1 mouse_genomes_project 5 32020397 32033582 - MGP_C3HHeJ_P0070707 Slbp protein_coding protein_coding MGP_C3HHeJ_T0070708.1 MGP_C3HHeJ_G0029148.1 mouse_genomes_project 5 32020397 32033314 - MGP_C3HHeJ_P0070708 Slbp protein_coding protein_coding MGP_C3HHeJ_T0070709.1 MGP_C3HHeJ_G0029148.1 mouse_genomes_project 5 32021836 32033346 - Slbp protein_coding retained_intron MGP_C3HHeJ_T0070710.1 MGP_C3HHeJ_G0029148.1 mouse_genomes_project 5 32023105 32033308 - MGP_C3HHeJ_P0070710 Slbp protein_coding protein_coding MGP_C3HHeJ_T0070711.1 MGP_C3HHeJ_G0029148.1 mouse_genomes_project 5 32025738 32033304 - MGP_C3HHeJ_P0070711 Slbp protein_coding protein_coding MGP_C3HHeJ_T0070712.1 MGP_C3HHeJ_G0029148.1 mouse_genomes_project 5 32027425 32033361 - Slbp protein_coding retained_intron MGP_C3HHeJ_T0070713.1 MGP_C3HHeJ_G0029148.1 mouse_genomes_project 5 32032632 32033309 - Slbp protein_coding retained_intron MGP_C3HHeJ_T0070274.1 MGP_C3HHeJ_G0029079.1 mouse_genomes_project 5 28221618 28235000 - MGP_C3HHeJ_P0070274 protein_coding unknown_likely_coding MGP_C3HHeJ_T0070275.1 MGP_C3HHeJ_G0029079.1 mouse_genomes_project 5 28221686 28235067 - protein_coding retained_intron MGP_C3HHeJ_T0070276.1 MGP_C3HHeJ_G0029079.1 mouse_genomes_project 5 28221753 28235022 - MGP_C3HHeJ_P0070276 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070277.1 MGP_C3HHeJ_G0029079.1 mouse_genomes_project 5 28222602 28235034 - MGP_C3HHeJ_P0070277 protein_coding protein_coding MGP_C3HHeJ_T0070278.1 MGP_C3HHeJ_G0029079.1 mouse_genomes_project 5 28224695 28235005 - MGP_C3HHeJ_P0070278 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070279.1 MGP_C3HHeJ_G0029079.1 mouse_genomes_project 5 28225305 28235039 - protein_coding retained_intron MGP_C3HHeJ_T0070280.1 MGP_C3HHeJ_G0029079.1 mouse_genomes_project 5 28225562 28235029 - MGP_C3HHeJ_P0070280 protein_coding protein_coding MGP_C3HHeJ_T0070281.1 MGP_C3HHeJ_G0029079.1 mouse_genomes_project 5 28229350 28234975 - protein_coding processed_transcript MGP_C3HHeJ_T0017968.1 MGP_C3HHeJ_G0015375.1 mouse_genomes_project 5 133004660 133016372 + processed_transcript processed_transcript MGP_C3HHeJ_T0017969.1 MGP_C3HHeJ_G0015375.1 mouse_genomes_project 5 133005101 133015821 + processed_transcript processed_transcript MGP_C3HHeJ_T0017970.1 MGP_C3HHeJ_G0015375.1 mouse_genomes_project 5 133007343 133010016 + processed_transcript retained_intron MGP_C3HHeJ_T0017971.1 MGP_C3HHeJ_G0015375.1 mouse_genomes_project 5 133011130 133012450 + processed_transcript retained_intron MGP_C3HHeJ_T0017972.1 MGP_C3HHeJ_G0015375.1 mouse_genomes_project 5 133012524 133015866 + processed_transcript processed_transcript MGP_C3HHeJ_T0017973.1 MGP_C3HHeJ_G0015375.1 mouse_genomes_project 5 133014970 133015983 + processed_transcript processed_transcript MGP_C3HHeJ_T0069620.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 460129 501168 + MGP_C3HHeJ_P0069620 Pex1 protein_coding protein_coding MGP_C3HHeJ_T0069621.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 460129 501166 + MGP_C3HHeJ_P0069621 Pex1 protein_coding protein_coding MGP_C3HHeJ_T0069622.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 460262 470812 + MGP_C3HHeJ_P0069622 Pex1 protein_coding protein_coding MGP_C3HHeJ_T0069623.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 460434 486922 + MGP_C3HHeJ_P0069623 Pex1 protein_coding protein_coding MGP_C3HHeJ_T0069624.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 469771 471071 + Pex1 protein_coding retained_intron MGP_C3HHeJ_T0069625.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 471151 483601 + MGP_C3HHeJ_P0069625 Pex1 protein_coding protein_coding MGP_C3HHeJ_T0069626.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 474568 481016 + Pex1 protein_coding retained_intron MGP_C3HHeJ_T0069627.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 481787 487395 + MGP_C3HHeJ_P0069627 Pex1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069628.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 482660 483647 + Pex1 protein_coding retained_intron MGP_C3HHeJ_T0069629.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 486956 487359 + Pex1 protein_coding retained_intron MGP_C3HHeJ_T0069630.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 490094 490732 + Pex1 protein_coding retained_intron MGP_C3HHeJ_T0069632.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 499106 499847 + Pex1 protein_coding retained_intron MGP_C3HHeJ_T0069633.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 499550 500897 + Pex1 protein_coding retained_intron MGP_C3HHeJ_T0069634.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 500086 500754 + Pex1 protein_coding retained_intron MGP_C3HHeJ_T0014686.1 MGP_C3HHeJ_G0012790.1 mouse_genomes_project 5 11280861 11282163 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100736.1 MGP_C3HHeJ_G0038930.1 mouse_genomes_project 5 155581652 155581771 - Gm26013 snoRNA snoRNA MGP_C3HHeJ_T0073596.1 MGP_C3HHeJ_G0029716.1 mouse_genomes_project 5 123883196 123956573 - MGP_C3HHeJ_P0073596 Ptpn11 protein_coding protein_coding MGP_C3HHeJ_T0073597.1 MGP_C3HHeJ_G0029716.1 mouse_genomes_project 5 123883198 123956543 - Ptpn11 protein_coding retained_intron MGP_C3HHeJ_T0073598.1 MGP_C3HHeJ_G0029716.1 mouse_genomes_project 5 123883204 123956505 - MGP_C3HHeJ_P0073598 Ptpn11 protein_coding protein_coding MGP_C3HHeJ_T0073599.1 MGP_C3HHeJ_G0029716.1 mouse_genomes_project 5 123886503 123897829 - Ptpn11 protein_coding processed_transcript MGP_C3HHeJ_T0004794.1 MGP_C3HHeJ_G0004120.1 mouse_genomes_project 5 142088779 142091398 + 6330418K02Rik antisense antisense MGP_C3HHeJ_T0004795.1 MGP_C3HHeJ_G0004120.1 mouse_genomes_project 5 142088790 142091069 + 6330418K02Rik antisense antisense MGP_C3HHeJ_T0004796.1 MGP_C3HHeJ_G0004120.1 mouse_genomes_project 5 142088805 142091398 + 6330418K02Rik antisense antisense MGP_C3HHeJ_T0004797.1 MGP_C3HHeJ_G0004120.1 mouse_genomes_project 5 142088844 142090966 + 6330418K02Rik antisense antisense MGP_C3HHeJ_T0004798.1 MGP_C3HHeJ_G0004120.1 mouse_genomes_project 5 142090280 142090820 + 6330418K02Rik antisense antisense MGP_C3HHeJ_T0069859.1 MGP_C3HHeJ_G0028996.1 mouse_genomes_project 5 11243224 11255313 + MGP_C3HHeJ_P0069859 protein_coding protein_coding MGP_C3HHeJ_T0008334.1 MGP_C3HHeJ_G0006752.1 mouse_genomes_project 5 141132812 141133768 + 9130604C24Rik lincRNA lincRNA MGP_C3HHeJ_T0069648.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 673787 714316 + Krit1 protein_coding retained_intron MGP_C3HHeJ_T0069649.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 673787 714391 + MGP_C3HHeJ_P0069649 Krit1 protein_coding protein_coding MGP_C3HHeJ_T0069650.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 673788 682320 + Krit1 protein_coding retained_intron MGP_C3HHeJ_T0069651.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 673792 714391 + MGP_C3HHeJ_P0069651 Krit1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069652.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 673793 718596 + MGP_C3HHeJ_P0069652 Krit1 protein_coding protein_coding MGP_C3HHeJ_T0069653.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 674008 717335 + MGP_C3HHeJ_P0069653 Krit1 protein_coding protein_coding MGP_C3HHeJ_T0069654.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 674843 680313 + MGP_C3HHeJ_P0069654 Krit1 protein_coding protein_coding MGP_C3HHeJ_T0069655.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 675896 682113 + Krit1 protein_coding retained_intron MGP_C3HHeJ_T0069656.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 683381 689173 + Krit1 protein_coding retained_intron MGP_C3HHeJ_T0069657.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 686294 690549 + Krit1 protein_coding retained_intron MGP_C3HHeJ_T0069658.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 693754 695668 + Krit1 protein_coding retained_intron MGP_C3HHeJ_T0073494.1 MGP_C3HHeJ_G0029689.1 mouse_genomes_project 5 120649473 120672905 + Hrk protein_coding processed_transcript MGP_C3HHeJ_T0073495.1 MGP_C3HHeJ_G0029689.1 mouse_genomes_project 5 120655633 120677550 + MGP_C3HHeJ_P0073495 Hrk protein_coding protein_coding MGP_C3HHeJ_T0075225.1 MGP_C3HHeJ_G0030005.1 mouse_genomes_project 5 144930962 145067657 - MGP_C3HHeJ_P0075225 Card11 protein_coding protein_coding MGP_C3HHeJ_T0075226.1 MGP_C3HHeJ_G0030005.1 mouse_genomes_project 5 144930964 144940190 - Card11 protein_coding retained_intron MGP_C3HHeJ_T0075227.1 MGP_C3HHeJ_G0030005.1 mouse_genomes_project 5 144973103 145067546 - Card11 protein_coding retained_intron MGP_C3HHeJ_T0073052.1 MGP_C3HHeJ_G0029607.1 mouse_genomes_project 5 114755750 114967641 - MGP_C3HHeJ_P0073052 Myo18b protein_coding protein_coding MGP_C3HHeJ_T0073053.1 MGP_C3HHeJ_G0029607.1 mouse_genomes_project 5 114755752 114834508 - Myo18b protein_coding processed_transcript MGP_C3HHeJ_T0073054.1 MGP_C3HHeJ_G0029607.1 mouse_genomes_project 5 114842264 114943301 - Myo18b protein_coding processed_transcript MGP_C3HHeJ_T0073055.1 MGP_C3HHeJ_G0029607.1 mouse_genomes_project 5 114887752 114944204 - MGP_C3HHeJ_P0073055 Myo18b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001853.1 MGP_C3HHeJ_G0001775.1 mouse_genomes_project 5 144017198 144019744 - TEC TEC MGP_C3HHeJ_T0072154.1 MGP_C3HHeJ_G0029412.1 mouse_genomes_project 5 89421723 89439812 + MGP_C3HHeJ_P0072154 Dck protein_coding protein_coding MGP_C3HHeJ_T0072155.1 MGP_C3HHeJ_G0029412.1 mouse_genomes_project 5 89426083 89426902 + Dck protein_coding retained_intron MGP_C3HHeJ_T0001866.1 MGP_C3HHeJ_G0001788.1 mouse_genomes_project 5 152074133 152075193 + TEC TEC MGP_C3HHeJ_T0071942.1 MGP_C3HHeJ_G0029352.1 mouse_genomes_project 5 77064125 77069527 + MGP_C3HHeJ_P0071942 Arl9 protein_coding protein_coding MGP_C3HHeJ_T0071943.1 MGP_C3HHeJ_G0029352.1 mouse_genomes_project 5 77066539 77070656 + MGP_C3HHeJ_P0071943 Arl9 protein_coding protein_coding MGP_C3HHeJ_T0001850.1 MGP_C3HHeJ_G0001772.1 mouse_genomes_project 5 140950800 140951737 + TEC TEC MGP_C3HHeJ_T0070441.1 MGP_C3HHeJ_G0029107.1 mouse_genomes_project 5 29299123 29304798 + MGP_C3HHeJ_P0070441 Dnajc5g protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070442.1 MGP_C3HHeJ_G0029107.1 mouse_genomes_project 5 29301120 29304553 + MGP_C3HHeJ_P0070442 Dnajc5g protein_coding protein_coding MGP_C3HHeJ_T0070443.1 MGP_C3HHeJ_G0029107.1 mouse_genomes_project 5 29301130 29304657 + MGP_C3HHeJ_P0070443 Dnajc5g protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070444.1 MGP_C3HHeJ_G0029107.1 mouse_genomes_project 5 29301132 29305340 + MGP_C3HHeJ_P0070444 Dnajc5g protein_coding protein_coding MGP_C3HHeJ_T0074399.1 MGP_C3HHeJ_G0029848.1 mouse_genomes_project 5 137551371 137561659 - MGP_C3HHeJ_P0074399 Ncf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074400.1 MGP_C3HHeJ_G0029848.1 mouse_genomes_project 5 137551578 137561659 - MGP_C3HHeJ_P0074400 Ncf1 protein_coding protein_coding MGP_C3HHeJ_T0074401.1 MGP_C3HHeJ_G0029848.1 mouse_genomes_project 5 137551578 137561659 - MGP_C3HHeJ_P0074401 Ncf1 protein_coding protein_coding MGP_C3HHeJ_T0074402.1 MGP_C3HHeJ_G0029848.1 mouse_genomes_project 5 137551578 137561659 - MGP_C3HHeJ_P0074402 Ncf1 protein_coding protein_coding MGP_C3HHeJ_T0074403.1 MGP_C3HHeJ_G0029848.1 mouse_genomes_project 5 137552690 137553541 - Ncf1 protein_coding retained_intron MGP_C3HHeJ_T0074404.1 MGP_C3HHeJ_G0029848.1 mouse_genomes_project 5 137554764 137560575 - Ncf1 protein_coding retained_intron MGP_C3HHeJ_T0074405.1 MGP_C3HHeJ_G0029848.1 mouse_genomes_project 5 137557036 137559994 - Ncf1 protein_coding retained_intron MGP_C3HHeJ_T0072563.1 MGP_C3HHeJ_G0029501.1 mouse_genomes_project 5 105005124 105014575 - MGP_C3HHeJ_P0072563 1700016H13Rik protein_coding protein_coding MGP_C3HHeJ_T0072564.1 MGP_C3HHeJ_G0029501.1 mouse_genomes_project 5 105005511 105014297 - MGP_C3HHeJ_P0072564 1700016H13Rik protein_coding protein_coding MGP_C3HHeJ_T0072565.1 MGP_C3HHeJ_G0029501.1 mouse_genomes_project 5 105005669 105014288 - MGP_C3HHeJ_P0072565 1700016H13Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072566.1 MGP_C3HHeJ_G0029501.1 mouse_genomes_project 5 105005675 105014313 - MGP_C3HHeJ_P0072566 1700016H13Rik protein_coding protein_coding MGP_C3HHeJ_T0072567.1 MGP_C3HHeJ_G0029501.1 mouse_genomes_project 5 105005780 105014288 - MGP_C3HHeJ_P0072567 1700016H13Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072568.1 MGP_C3HHeJ_G0029501.1 mouse_genomes_project 5 105005853 105014288 - MGP_C3HHeJ_P0072568 1700016H13Rik protein_coding protein_coding MGP_C3HHeJ_T0072569.1 MGP_C3HHeJ_G0029501.1 mouse_genomes_project 5 105005853 105014289 - MGP_C3HHeJ_P0072569 1700016H13Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008038.1 MGP_C3HHeJ_G0006545.1 mouse_genomes_project 5 42406281 42407320 - Gm42555 lincRNA lincRNA MGP_C3HHeJ_T0014857.1 MGP_C3HHeJ_G0012961.1 mouse_genomes_project 5 78692770 78693134 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014829.1 MGP_C3HHeJ_G0012933.1 mouse_genomes_project 5 66525387 66525898 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014708.1 MGP_C3HHeJ_G0012812.1 mouse_genomes_project 5 19412497 19413137 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001630.1 MGP_C3HHeJ_G0001555.1 mouse_genomes_project 5 67291510 67293148 - TEC TEC MGP_C3HHeJ_T0001838.1 MGP_C3HHeJ_G0001761.1 mouse_genomes_project 5 137507453 137508817 + TEC TEC MGP_C3HHeJ_T0001839.1 MGP_C3HHeJ_G0001761.1 mouse_genomes_project 5 137507465 137508064 + TEC TEC MGP_C3HHeJ_T0071764.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73229252 73250185 + MGP_C3HHeJ_P0071764 Ociad1 protein_coding protein_coding MGP_C3HHeJ_T0071765.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73229260 73250297 + MGP_C3HHeJ_P0071765 Ociad1 protein_coding protein_coding MGP_C3HHeJ_T0071766.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73229261 73245823 + MGP_C3HHeJ_P0071766 Ociad1 protein_coding protein_coding MGP_C3HHeJ_T0071767.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73229275 73243238 + MGP_C3HHeJ_P0071767 Ociad1 protein_coding protein_coding MGP_C3HHeJ_T0071768.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73229300 73250142 + MGP_C3HHeJ_P0071768 Ociad1 protein_coding protein_coding MGP_C3HHeJ_T0071769.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73229309 73246874 + MGP_C3HHeJ_P0071769 Ociad1 protein_coding protein_coding MGP_C3HHeJ_T0071770.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73229363 73250169 + MGP_C3HHeJ_P0071770 Ociad1 protein_coding protein_coding MGP_C3HHeJ_T0071771.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73229521 73231435 + MGP_C3HHeJ_P0071771 Ociad1 protein_coding protein_coding MGP_C3HHeJ_T0071772.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73231458 73250169 + MGP_C3HHeJ_P0071772 Ociad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071773.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73240579 73241612 + Ociad1 protein_coding retained_intron MGP_C3HHeJ_T0098138.1 MGP_C3HHeJ_G0036350.1 mouse_genomes_project 5 425203 425323 + n-R5s169 rRNA rRNA MGP_C3HHeJ_T0001586.1 MGP_C3HHeJ_G0001512.1 mouse_genomes_project 5 61999931 62000975 - TEC TEC MGP_C3HHeJ_T0071141.1 MGP_C3HHeJ_G0029217.1 mouse_genomes_project 5 40235422 40327092 - MGP_C3HHeJ_P0071141 Rab28 protein_coding protein_coding MGP_C3HHeJ_T0071142.1 MGP_C3HHeJ_G0029217.1 mouse_genomes_project 5 40235422 40327125 - MGP_C3HHeJ_P0071142 Rab28 protein_coding protein_coding MGP_C3HHeJ_T0071143.1 MGP_C3HHeJ_G0029217.1 mouse_genomes_project 5 40235423 40327128 - MGP_C3HHeJ_P0071143 Rab28 protein_coding protein_coding MGP_C3HHeJ_T0071144.1 MGP_C3HHeJ_G0029217.1 mouse_genomes_project 5 40236179 40237949 - Rab28 protein_coding retained_intron MGP_C3HHeJ_T0071145.1 MGP_C3HHeJ_G0029217.1 mouse_genomes_project 5 40236673 40239564 - Rab28 protein_coding retained_intron MGP_C3HHeJ_T0007979.1 MGP_C3HHeJ_G0006506.1 mouse_genomes_project 5 21759831 21762071 + lincRNA lincRNA MGP_C3HHeJ_T0100694.1 MGP_C3HHeJ_G0038888.1 mouse_genomes_project 5 52004149 52004261 - Gm23532 snoRNA snoRNA MGP_C3HHeJ_T0001775.1 MGP_C3HHeJ_G0001699.1 mouse_genomes_project 5 125429444 125434121 + TEC TEC MGP_C3HHeJ_T0011509.1 MGP_C3HHeJ_G0009642.1 mouse_genomes_project 5 113264808 113264919 - Gm27602 misc_RNA misc_RNA MGP_C3HHeJ_T0001509.1 MGP_C3HHeJ_G0001436.1 mouse_genomes_project 5 44198447 44200517 + TEC TEC MGP_C3HHeJ_T0008355.1 MGP_C3HHeJ_G0006770.1 mouse_genomes_project 5 151150370 151163894 - Gm34333 lincRNA lincRNA MGP_C3HHeJ_T0072202.1 MGP_C3HHeJ_G0029423.1 mouse_genomes_project 5 91294484 91332856 + MGP_C3HHeJ_P0072202 5830473C10Rik protein_coding protein_coding MGP_C3HHeJ_T0072203.1 MGP_C3HHeJ_G0029423.1 mouse_genomes_project 5 91294594 91312359 + MGP_C3HHeJ_P0072203 5830473C10Rik protein_coding protein_coding MGP_C3HHeJ_T0074053.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127285938 127364472 - MGP_C3HHeJ_P0074053 Mphosph9 protein_coding protein_coding MGP_C3HHeJ_T0074054.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127287648 127364349 - MGP_C3HHeJ_P0074054 Mphosph9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074055.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127288648 127364352 - MGP_C3HHeJ_P0074055 Mphosph9 protein_coding protein_coding MGP_C3HHeJ_T0074056.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127289600 127296081 - Mphosph9 protein_coding processed_transcript MGP_C3HHeJ_T0074057.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127293973 127300300 - Mphosph9 protein_coding processed_transcript MGP_C3HHeJ_T0074058.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127295917 127297986 - Mphosph9 protein_coding processed_transcript MGP_C3HHeJ_T0074059.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127296918 127298357 - Mphosph9 protein_coding retained_intron MGP_C3HHeJ_T0074060.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127324528 127364370 - MGP_C3HHeJ_P0074060 Mphosph9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074061.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127332131 127361627 - MGP_C3HHeJ_P0074061 Mphosph9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074062.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127351465 127364472 - Mphosph9 protein_coding processed_transcript MGP_C3HHeJ_T0074063.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127351465 127364352 - Mphosph9 protein_coding processed_transcript MGP_C3HHeJ_T0071581.1 MGP_C3HHeJ_G0029290.1 mouse_genomes_project 5 66301473 66313720 + MGP_C3HHeJ_P0071581 Uchl1 protein_coding protein_coding MGP_C3HHeJ_T0071582.1 MGP_C3HHeJ_G0029290.1 mouse_genomes_project 5 66301624 66302230 + Uchl1 protein_coding retained_intron MGP_C3HHeJ_T0071583.1 MGP_C3HHeJ_G0029290.1 mouse_genomes_project 5 66302276 66313715 + Uchl1 protein_coding retained_intron MGP_C3HHeJ_T0071584.1 MGP_C3HHeJ_G0029290.1 mouse_genomes_project 5 66310176 66313423 + Uchl1 protein_coding retained_intron MGP_C3HHeJ_T0004660.1 MGP_C3HHeJ_G0004027.1 mouse_genomes_project 5 91792309 91810811 - Gm42532 antisense antisense MGP_C3HHeJ_T0001662.1 MGP_C3HHeJ_G0001586.1 mouse_genomes_project 5 74418481 74420075 - TEC TEC MGP_C3HHeJ_T0014852.1 MGP_C3HHeJ_G0012956.1 mouse_genomes_project 5 76794752 76795193 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101229.1 MGP_C3HHeJ_G0039360.1 mouse_genomes_project 5 76224153 76224623 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0001676.1 MGP_C3HHeJ_G0001600.1 mouse_genomes_project 5 91126366 91129009 + TEC TEC MGP_C3HHeJ_T0101217.1 MGP_C3HHeJ_G0039351.1 mouse_genomes_project 5 31495882 31497044 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101218.1 MGP_C3HHeJ_G0039351.1 mouse_genomes_project 5 31496569 31497356 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0070816.1 MGP_C3HHeJ_G0029164.1 mouse_genomes_project 5 32912543 32931685 - MGP_C3HHeJ_P0070816 Tnip2 protein_coding protein_coding MGP_C3HHeJ_T0070817.1 MGP_C3HHeJ_G0029164.1 mouse_genomes_project 5 32912543 32931657 - MGP_C3HHeJ_P0070817 Tnip2 protein_coding protein_coding MGP_C3HHeJ_T0070818.1 MGP_C3HHeJ_G0029164.1 mouse_genomes_project 5 32912586 32931632 - MGP_C3HHeJ_P0070818 Tnip2 protein_coding protein_coding MGP_C3HHeJ_T0070819.1 MGP_C3HHeJ_G0029164.1 mouse_genomes_project 5 32916061 32918075 - Tnip2 protein_coding retained_intron MGP_C3HHeJ_T0070820.1 MGP_C3HHeJ_G0029164.1 mouse_genomes_project 5 32917628 32931543 - Tnip2 protein_coding retained_intron MGP_C3HHeJ_T0070821.1 MGP_C3HHeJ_G0029164.1 mouse_genomes_project 5 32919742 32931354 - Tnip2 protein_coding retained_intron MGP_C3HHeJ_T0014927.1 MGP_C3HHeJ_G0013031.1 mouse_genomes_project 5 109780885 109781307 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001821.1 MGP_C3HHeJ_G0001744.1 mouse_genomes_project 5 135194884 135195632 - TEC TEC MGP_C3HHeJ_T0072705.1 MGP_C3HHeJ_G0029535.1 mouse_genomes_project 5 109113994 109117486 + MGP_C3HHeJ_P0072705 Lpcat2b protein_coding protein_coding MGP_C3HHeJ_T0014959.1 MGP_C3HHeJ_G0013063.1 mouse_genomes_project 5 119481627 119482208 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070810.1 MGP_C3HHeJ_G0029163.1 mouse_genomes_project 5 32777132 32902883 + MGP_C3HHeJ_P0070810 Fam193a protein_coding protein_coding MGP_C3HHeJ_T0070811.1 MGP_C3HHeJ_G0029163.1 mouse_genomes_project 5 32825949 32902174 + MGP_C3HHeJ_P0070811 Fam193a protein_coding unknown_likely_coding MGP_C3HHeJ_T0070812.1 MGP_C3HHeJ_G0029163.1 mouse_genomes_project 5 32843032 32902174 + MGP_C3HHeJ_P0070812 Fam193a protein_coding protein_coding MGP_C3HHeJ_T0070813.1 MGP_C3HHeJ_G0029163.1 mouse_genomes_project 5 32847912 32860318 + MGP_C3HHeJ_P0070813 Fam193a protein_coding protein_coding MGP_C3HHeJ_T0070814.1 MGP_C3HHeJ_G0029163.1 mouse_genomes_project 5 32860411 32874712 + MGP_C3HHeJ_P0070814 Fam193a protein_coding protein_coding MGP_C3HHeJ_T0070815.1 MGP_C3HHeJ_G0029163.1 mouse_genomes_project 5 32881747 32894116 + MGP_C3HHeJ_P0070815 Fam193a protein_coding protein_coding MGP_C3HHeJ_T0074661.1 MGP_C3HHeJ_G0029891.1 mouse_genomes_project 5 139561633 139570485 + MGP_C3HHeJ_P0074661 Upk3b protein_coding protein_coding MGP_C3HHeJ_T0010631.1 MGP_C3HHeJ_G0008764.1 mouse_genomes_project 5 128538845 128538922 + Gm27551 miRNA miRNA MGP_C3HHeJ_T0071233.1 MGP_C3HHeJ_G0029234.1 mouse_genomes_project 5 44186122 44192979 + MGP_C3HHeJ_P0071233 Med28 protein_coding protein_coding MGP_C3HHeJ_T0071234.1 MGP_C3HHeJ_G0029234.1 mouse_genomes_project 5 44186153 44196653 + MGP_C3HHeJ_P0071234 Med28 protein_coding protein_coding MGP_C3HHeJ_T0071235.1 MGP_C3HHeJ_G0029234.1 mouse_genomes_project 5 44186834 44192986 + Med28 protein_coding processed_transcript MGP_C3HHeJ_T0071236.1 MGP_C3HHeJ_G0029234.1 mouse_genomes_project 5 44189518 44192559 + Med28 protein_coding retained_intron MGP_C3HHeJ_T0070873.1 MGP_C3HHeJ_G0029170.1 mouse_genomes_project 5 33187068 33248903 + Htt protein_coding retained_intron MGP_C3HHeJ_T0070874.1 MGP_C3HHeJ_G0029170.1 mouse_genomes_project 5 33187072 33342519 + MGP_C3HHeJ_P0070874 Htt protein_coding protein_coding MGP_C3HHeJ_T0070875.1 MGP_C3HHeJ_G0029170.1 mouse_genomes_project 5 33187089 33240211 + Htt protein_coding retained_intron MGP_C3HHeJ_T0070876.1 MGP_C3HHeJ_G0029170.1 mouse_genomes_project 5 33221260 33223874 + Htt protein_coding retained_intron MGP_C3HHeJ_T0070877.1 MGP_C3HHeJ_G0029170.1 mouse_genomes_project 5 33232229 33237295 + Htt protein_coding retained_intron MGP_C3HHeJ_T0070878.1 MGP_C3HHeJ_G0029170.1 mouse_genomes_project 5 33235510 33237781 + Htt protein_coding retained_intron MGP_C3HHeJ_T0070879.1 MGP_C3HHeJ_G0029170.1 mouse_genomes_project 5 33302067 33309854 + Htt protein_coding retained_intron MGP_C3HHeJ_T0070880.1 MGP_C3HHeJ_G0029170.1 mouse_genomes_project 5 33311326 33329593 + Htt protein_coding retained_intron MGP_C3HHeJ_T0100698.1 MGP_C3HHeJ_G0038892.1 mouse_genomes_project 5 56401906 56402034 - Gm23015 snoRNA snoRNA MGP_C3HHeJ_T0074975.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141859043 141866884 - MGP_C3HHeJ_P0074975 Mcm7 protein_coding protein_coding MGP_C3HHeJ_T0074976.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141859060 141860178 - Mcm7 protein_coding retained_intron MGP_C3HHeJ_T0074977.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141859060 141866280 - MGP_C3HHeJ_P0074977 Mcm7 protein_coding protein_coding MGP_C3HHeJ_T0074978.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141862521 141864843 - Mcm7 protein_coding retained_intron MGP_C3HHeJ_T0074979.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141862917 141865728 - MGP_C3HHeJ_P0074979 Mcm7 protein_coding protein_coding MGP_C3HHeJ_T0074980.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141863170 141864105 - Mcm7 protein_coding retained_intron MGP_C3HHeJ_T0074981.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141863339 141865479 - MGP_C3HHeJ_P0074981 Mcm7 protein_coding protein_coding MGP_C3HHeJ_T0074982.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141863340 141866277 - MGP_C3HHeJ_P0074982 Mcm7 protein_coding protein_coding MGP_C3HHeJ_T0074983.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141863670 141865123 - MGP_C3HHeJ_P0074983 Mcm7 protein_coding protein_coding MGP_C3HHeJ_T0074984.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141863872 141865703 - MGP_C3HHeJ_P0074984 Mcm7 protein_coding protein_coding MGP_C3HHeJ_T0001657.1 MGP_C3HHeJ_G0001581.1 mouse_genomes_project 5 74024579 74025326 + TEC TEC MGP_C3HHeJ_T0073121.1 MGP_C3HHeJ_G0029621.1 mouse_genomes_project 5 115976967 115977998 - MGP_C3HHeJ_P0073121 Selplg protein_coding protein_coding MGP_C3HHeJ_T0073122.1 MGP_C3HHeJ_G0029621.1 mouse_genomes_project 5 115976978 115989853 - MGP_C3HHeJ_P0073122 Selplg protein_coding protein_coding MGP_C3HHeJ_T0073123.1 MGP_C3HHeJ_G0029621.1 mouse_genomes_project 5 115976986 115977749 - MGP_C3HHeJ_P0073123 Selplg protein_coding protein_coding MGP_C3HHeJ_T0073124.1 MGP_C3HHeJ_G0029621.1 mouse_genomes_project 5 115976986 115977689 - MGP_C3HHeJ_P0073124 Selplg protein_coding protein_coding MGP_C3HHeJ_T0073125.1 MGP_C3HHeJ_G0029621.1 mouse_genomes_project 5 115978477 115991998 - MGP_C3HHeJ_P0073125 Selplg protein_coding protein_coding MGP_C3HHeJ_T0073126.1 MGP_C3HHeJ_G0029621.1 mouse_genomes_project 5 115987512 115989824 - Selplg protein_coding retained_intron MGP_C3HHeJ_T0008137.1 MGP_C3HHeJ_G0006627.1 mouse_genomes_project 5 100710982 100713631 + Gm43253 lincRNA lincRNA MGP_C3HHeJ_T0071450.1 MGP_C3HHeJ_G0029273.1 mouse_genomes_project 5 64739447 64805249 + MGP_C3HHeJ_P0071450 Wdr19 protein_coding protein_coding MGP_C3HHeJ_T0071451.1 MGP_C3HHeJ_G0029273.1 mouse_genomes_project 5 64739449 64805258 + MGP_C3HHeJ_P0071451 Wdr19 protein_coding protein_coding MGP_C3HHeJ_T0071452.1 MGP_C3HHeJ_G0029273.1 mouse_genomes_project 5 64739451 64745066 + Wdr19 protein_coding retained_intron MGP_C3HHeJ_T0071453.1 MGP_C3HHeJ_G0029273.1 mouse_genomes_project 5 64739468 64789549 + Wdr19 protein_coding retained_intron MGP_C3HHeJ_T0071454.1 MGP_C3HHeJ_G0029273.1 mouse_genomes_project 5 64739482 64770970 + Wdr19 protein_coding retained_intron MGP_C3HHeJ_T0071455.1 MGP_C3HHeJ_G0029273.1 mouse_genomes_project 5 64739491 64764259 + Wdr19 protein_coding retained_intron MGP_C3HHeJ_T0071456.1 MGP_C3HHeJ_G0029273.1 mouse_genomes_project 5 64742366 64805253 + Wdr19 protein_coding retained_intron MGP_C3HHeJ_T0071457.1 MGP_C3HHeJ_G0029273.1 mouse_genomes_project 5 64801267 64805252 + MGP_C3HHeJ_P0071457 Wdr19 protein_coding protein_coding MGP_C3HHeJ_T0072599.1 MGP_C3HHeJ_G0029512.1 mouse_genomes_project 5 105834892 105840893 + MGP_C3HHeJ_P0072599 Spp1 protein_coding protein_coding MGP_C3HHeJ_T0072600.1 MGP_C3HHeJ_G0029512.1 mouse_genomes_project 5 105834892 105840891 + MGP_C3HHeJ_P0072600 Spp1 protein_coding protein_coding MGP_C3HHeJ_T0072601.1 MGP_C3HHeJ_G0029512.1 mouse_genomes_project 5 105834895 105840890 + MGP_C3HHeJ_P0072601 Spp1 protein_coding protein_coding MGP_C3HHeJ_T0072602.1 MGP_C3HHeJ_G0029512.1 mouse_genomes_project 5 105834913 105839379 + MGP_C3HHeJ_P0072602 Spp1 protein_coding protein_coding MGP_C3HHeJ_T0072603.1 MGP_C3HHeJ_G0029512.1 mouse_genomes_project 5 105834916 105839341 + MGP_C3HHeJ_P0072603 Spp1 protein_coding protein_coding MGP_C3HHeJ_T0072604.1 MGP_C3HHeJ_G0029512.1 mouse_genomes_project 5 105834932 105837539 + MGP_C3HHeJ_P0072604 Spp1 protein_coding protein_coding MGP_C3HHeJ_T0072605.1 MGP_C3HHeJ_G0029512.1 mouse_genomes_project 5 105836020 105840886 + MGP_C3HHeJ_P0072605 Spp1 protein_coding protein_coding MGP_C3HHeJ_T0001548.1 MGP_C3HHeJ_G0001474.1 mouse_genomes_project 5 48989858 48992425 + TEC TEC MGP_C3HHeJ_T0073451.1 MGP_C3HHeJ_G0029680.1 mouse_genomes_project 5 119715989 119721034 - MGP_C3HHeJ_P0073451 Pebp1 protein_coding protein_coding MGP_C3HHeJ_T0073452.1 MGP_C3HHeJ_G0029680.1 mouse_genomes_project 5 119716011 119721019 - MGP_C3HHeJ_P0073452 Pebp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073453.1 MGP_C3HHeJ_G0029680.1 mouse_genomes_project 5 119719241 119720976 - Pebp1 protein_coding retained_intron MGP_C3HHeJ_T0070330.1 MGP_C3HHeJ_G0029091.1 mouse_genomes_project 5 28810339 28820643 + MGP_C3HHeJ_P0070330 Slc35f6 protein_coding protein_coding MGP_C3HHeJ_T0070331.1 MGP_C3HHeJ_G0029091.1 mouse_genomes_project 5 28810351 28815683 + Slc35f6 protein_coding retained_intron MGP_C3HHeJ_T0070332.1 MGP_C3HHeJ_G0029091.1 mouse_genomes_project 5 28810365 28820590 + MGP_C3HHeJ_P0070332 Slc35f6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070333.1 MGP_C3HHeJ_G0029091.1 mouse_genomes_project 5 28810374 28818499 + Slc35f6 protein_coding retained_intron MGP_C3HHeJ_T0070334.1 MGP_C3HHeJ_G0029091.1 mouse_genomes_project 5 28810410 28820590 + MGP_C3HHeJ_P0070334 Slc35f6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070335.1 MGP_C3HHeJ_G0029091.1 mouse_genomes_project 5 28810420 28822132 + MGP_C3HHeJ_P0070335 Slc35f6 protein_coding protein_coding MGP_C3HHeJ_T0014828.1 MGP_C3HHeJ_G0012932.1 mouse_genomes_project 5 65973681 65973949 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070769.1 MGP_C3HHeJ_G0029156.1 mouse_genomes_project 5 32384703 32394638 + MGP_C3HHeJ_P0070769 Nat8l protein_coding protein_coding MGP_C3HHeJ_T0070770.1 MGP_C3HHeJ_G0029156.1 mouse_genomes_project 5 32388482 32389563 + Nat8l protein_coding processed_transcript MGP_C3HHeJ_T0001667.1 MGP_C3HHeJ_G0001591.1 mouse_genomes_project 5 75877686 75879808 + TEC TEC MGP_C3HHeJ_T0011505.1 MGP_C3HHeJ_G0009638.1 mouse_genomes_project 5 101702011 101702149 + Gm28030 misc_RNA misc_RNA MGP_C3HHeJ_T0101422.1 MGP_C3HHeJ_G0039452.1 mouse_genomes_project 5 30812311 30819060 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101423.1 MGP_C3HHeJ_G0039452.1 mouse_genomes_project 5 30812315 30819116 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0008121.1 MGP_C3HHeJ_G0006614.1 mouse_genomes_project 5 93624313 93631861 - 4932430I15Rik lincRNA lincRNA MGP_C3HHeJ_T0071524.1 MGP_C3HHeJ_G0029284.1 mouse_genomes_project 5 65453169 65488547 + MGP_C3HHeJ_P0071524 Rhoh protein_coding protein_coding MGP_C3HHeJ_T0071525.1 MGP_C3HHeJ_G0029284.1 mouse_genomes_project 5 65454775 65485290 + MGP_C3HHeJ_P0071525 Rhoh protein_coding protein_coding MGP_C3HHeJ_T0071526.1 MGP_C3HHeJ_G0029284.1 mouse_genomes_project 5 65455348 65459704 + Rhoh protein_coding processed_transcript MGP_C3HHeJ_T0071527.1 MGP_C3HHeJ_G0029284.1 mouse_genomes_project 5 65455386 65460164 + Rhoh protein_coding retained_intron MGP_C3HHeJ_T0014860.1 MGP_C3HHeJ_G0012964.1 mouse_genomes_project 5 81283657 81284531 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075385.1 MGP_C3HHeJ_G0030040.1 mouse_genomes_project 5 148186931 148214766 - MGP_C3HHeJ_P0075385 Ccz1 protein_coding protein_coding MGP_C3HHeJ_T0075386.1 MGP_C3HHeJ_G0030040.1 mouse_genomes_project 5 148190497 148191607 - Ccz1 protein_coding processed_transcript MGP_C3HHeJ_T0075387.1 MGP_C3HHeJ_G0030040.1 mouse_genomes_project 5 148191500 148203225 - Ccz1 protein_coding retained_intron MGP_C3HHeJ_T0075388.1 MGP_C3HHeJ_G0030040.1 mouse_genomes_project 5 148209149 148214790 - Ccz1 protein_coding retained_intron MGP_C3HHeJ_T0075389.1 MGP_C3HHeJ_G0030040.1 mouse_genomes_project 5 148212381 148214790 - Ccz1 protein_coding retained_intron MGP_C3HHeJ_T0014712.1 MGP_C3HHeJ_G0012816.1 mouse_genomes_project 5 20043484 20043854 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074337.1 MGP_C3HHeJ_G0029836.1 mouse_genomes_project 5 133368608 133414579 + MGP_C3HHeJ_P0074337 Rabgef1 protein_coding protein_coding MGP_C3HHeJ_T0074338.1 MGP_C3HHeJ_G0029836.1 mouse_genomes_project 5 133368634 133410679 + MGP_C3HHeJ_P0074338 Rabgef1 protein_coding protein_coding MGP_C3HHeJ_T0074339.1 MGP_C3HHeJ_G0029836.1 mouse_genomes_project 5 133385923 133408989 + MGP_C3HHeJ_P0074339 Rabgef1 protein_coding protein_coding MGP_C3HHeJ_T0074340.1 MGP_C3HHeJ_G0029836.1 mouse_genomes_project 5 133385923 133414574 + MGP_C3HHeJ_P0074340 Rabgef1 protein_coding protein_coding MGP_C3HHeJ_T0074341.1 MGP_C3HHeJ_G0029836.1 mouse_genomes_project 5 133385970 133406309 + Rabgef1 protein_coding processed_transcript MGP_C3HHeJ_T0074342.1 MGP_C3HHeJ_G0029836.1 mouse_genomes_project 5 133385982 133390084 + Rabgef1 protein_coding retained_intron MGP_C3HHeJ_T0074343.1 MGP_C3HHeJ_G0029836.1 mouse_genomes_project 5 133406271 133411228 + Rabgef1 protein_coding retained_intron MGP_C3HHeJ_T0074344.1 MGP_C3HHeJ_G0029836.1 mouse_genomes_project 5 133411617 133413212 + Rabgef1 protein_coding retained_intron MGP_C3HHeJ_T0074345.1 MGP_C3HHeJ_G0029836.1 mouse_genomes_project 5 133413402 133414287 + MGP_C3HHeJ_P0074345 Rabgef1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072859.1 MGP_C3HHeJ_G0029566.1 mouse_genomes_project 5 110891541 110934229 - MGP_C3HHeJ_P0072859 protein_coding protein_coding MGP_C3HHeJ_T0001466.1 MGP_C3HHeJ_G0001393.1 mouse_genomes_project 5 30982859 30983710 - TEC TEC MGP_C3HHeJ_T0073898.1 MGP_C3HHeJ_G0029759.1 mouse_genomes_project 5 126145165 126232580 + Psmd9 protein_coding processed_transcript MGP_C3HHeJ_T0073905.1 MGP_C3HHeJ_G0029759.1 mouse_genomes_project 5 126220723 126238252 + Psmd9 protein_coding processed_transcript MGP_C3HHeJ_T0073906.1 MGP_C3HHeJ_G0029759.1 mouse_genomes_project 5 126220723 126244882 + MGP_C3HHeJ_P0073906 Psmd9 protein_coding protein_coding MGP_C3HHeJ_T0073907.1 MGP_C3HHeJ_G0029759.1 mouse_genomes_project 5 126220791 126221560 + Psmd9 protein_coding retained_intron MGP_C3HHeJ_T0073908.1 MGP_C3HHeJ_G0029759.1 mouse_genomes_project 5 126221482 126223381 + Psmd9 protein_coding TEC MGP_C3HHeJ_T0073909.1 MGP_C3HHeJ_G0029759.1 mouse_genomes_project 5 126227392 126243273 + MGP_C3HHeJ_P0073909 Psmd9 protein_coding protein_coding MGP_C3HHeJ_T0073910.1 MGP_C3HHeJ_G0029759.1 mouse_genomes_project 5 126234820 126243273 + MGP_C3HHeJ_P0073910 Psmd9 protein_coding protein_coding MGP_C3HHeJ_T0014692.1 MGP_C3HHeJ_G0012796.1 mouse_genomes_project 5 14036662 14037681 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004739.1 MGP_C3HHeJ_G0004077.1 mouse_genomes_project 5 123021993 123035936 - Gm27199 antisense antisense MGP_C3HHeJ_T0072204.1 MGP_C3HHeJ_G0029424.1 mouse_genomes_project 5 91338126 91375395 - MGP_C3HHeJ_P0072204 Rassf6 protein_coding protein_coding MGP_C3HHeJ_T0072205.1 MGP_C3HHeJ_G0029424.1 mouse_genomes_project 5 91338126 91375395 - MGP_C3HHeJ_P0072205 Rassf6 protein_coding protein_coding MGP_C3HHeJ_T0072206.1 MGP_C3HHeJ_G0029424.1 mouse_genomes_project 5 91338673 91344880 - MGP_C3HHeJ_P0072206 Rassf6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072207.1 MGP_C3HHeJ_G0029424.1 mouse_genomes_project 5 91338881 91375562 - MGP_C3HHeJ_P0072207 Rassf6 protein_coding protein_coding MGP_C3HHeJ_T0072208.1 MGP_C3HHeJ_G0029424.1 mouse_genomes_project 5 91352589 91375533 - MGP_C3HHeJ_P0072208 Rassf6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072209.1 MGP_C3HHeJ_G0029424.1 mouse_genomes_project 5 91357126 91375432 - MGP_C3HHeJ_P0072209 Rassf6 protein_coding protein_coding MGP_C3HHeJ_T0072210.1 MGP_C3HHeJ_G0029424.1 mouse_genomes_project 5 91373379 91375560 - Rassf6 protein_coding processed_transcript MGP_C3HHeJ_T0014745.1 MGP_C3HHeJ_G0012849.1 mouse_genomes_project 5 27814274 27814566 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001842.1 MGP_C3HHeJ_G0001764.1 mouse_genomes_project 5 137885606 137887071 - TEC TEC MGP_C3HHeJ_T0004715.1 MGP_C3HHeJ_G0004064.1 mouse_genomes_project 5 117247521 117250100 + Hnf1aos2 antisense antisense MGP_C3HHeJ_T0074290.1 MGP_C3HHeJ_G0029826.1 mouse_genomes_project 5 133016986 133034771 + MGP_C3HHeJ_P0074290 Sumf2 protein_coding protein_coding MGP_C3HHeJ_T0074291.1 MGP_C3HHeJ_G0029826.1 mouse_genomes_project 5 133017011 133025567 + MGP_C3HHeJ_P0074291 Sumf2 protein_coding protein_coding MGP_C3HHeJ_T0074292.1 MGP_C3HHeJ_G0029826.1 mouse_genomes_project 5 133017020 133025657 + Sumf2 protein_coding processed_transcript MGP_C3HHeJ_T0074293.1 MGP_C3HHeJ_G0029826.1 mouse_genomes_project 5 133017020 133034153 + MGP_C3HHeJ_P0074293 Sumf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074294.1 MGP_C3HHeJ_G0029826.1 mouse_genomes_project 5 133023329 133033519 + Sumf2 protein_coding processed_transcript MGP_C3HHeJ_T0074295.1 MGP_C3HHeJ_G0029826.1 mouse_genomes_project 5 133023329 133033519 + Sumf2 protein_coding processed_transcript MGP_C3HHeJ_T0071958.1 MGP_C3HHeJ_G0029358.1 mouse_genomes_project 5 77394103 77436047 + MGP_C3HHeJ_P0071958 Polr2b protein_coding protein_coding MGP_C3HHeJ_T0071959.1 MGP_C3HHeJ_G0029358.1 mouse_genomes_project 5 77394447 77397234 + Polr2b protein_coding retained_intron MGP_C3HHeJ_T0071960.1 MGP_C3HHeJ_G0029358.1 mouse_genomes_project 5 77412081 77413297 + Polr2b protein_coding retained_intron MGP_C3HHeJ_T0071961.1 MGP_C3HHeJ_G0029358.1 mouse_genomes_project 5 77427094 77429659 + Polr2b protein_coding retained_intron MGP_C3HHeJ_T0014942.1 MGP_C3HHeJ_G0013046.1 mouse_genomes_project 5 112656752 112658444 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008145.1 MGP_C3HHeJ_G0006633.1 mouse_genomes_project 5 101692880 101702446 - 5430416N02Rik lincRNA lincRNA MGP_C3HHeJ_T0008146.1 MGP_C3HHeJ_G0006633.1 mouse_genomes_project 5 101695688 101702427 - 5430416N02Rik lincRNA lincRNA MGP_C3HHeJ_T0008147.1 MGP_C3HHeJ_G0006633.1 mouse_genomes_project 5 101701646 101702286 - 5430416N02Rik lincRNA lincRNA MGP_C3HHeJ_T0008148.1 MGP_C3HHeJ_G0006633.1 mouse_genomes_project 5 101701904 101702426 - 5430416N02Rik lincRNA lincRNA MGP_C3HHeJ_T0072611.1 MGP_C3HHeJ_G0029516.1 mouse_genomes_project 5 106409788 106459767 - MGP_C3HHeJ_P0072611 Abcg3 protein_coding protein_coding MGP_C3HHeJ_T0072612.1 MGP_C3HHeJ_G0029516.1 mouse_genomes_project 5 106410421 106454766 - MGP_C3HHeJ_P0072612 Abcg3 protein_coding protein_coding MGP_C3HHeJ_T0001582.1 MGP_C3HHeJ_G0001508.1 mouse_genomes_project 5 57405361 57408853 + TEC TEC MGP_C3HHeJ_T0008098.1 MGP_C3HHeJ_G0006594.1 mouse_genomes_project 5 77066516 77078975 - 1700112J05Rik lincRNA lincRNA MGP_C3HHeJ_T0071806.1 MGP_C3HHeJ_G0029332.1 mouse_genomes_project 5 74179076 74517566 - MGP_C3HHeJ_P0071806 Scfd2 protein_coding protein_coding MGP_C3HHeJ_T0071807.1 MGP_C3HHeJ_G0029332.1 mouse_genomes_project 5 74179339 74265746 - Scfd2 protein_coding processed_transcript MGP_C3HHeJ_T0071808.1 MGP_C3HHeJ_G0029332.1 mouse_genomes_project 5 74180338 74201868 - Scfd2 protein_coding retained_intron MGP_C3HHeJ_T0071809.1 MGP_C3HHeJ_G0029332.1 mouse_genomes_project 5 74180341 74517569 - MGP_C3HHeJ_P0071809 Scfd2 protein_coding protein_coding MGP_C3HHeJ_T0071810.1 MGP_C3HHeJ_G0029332.1 mouse_genomes_project 5 74383029 74385684 - MGP_C3HHeJ_P0071810 Scfd2 protein_coding protein_coding MGP_C3HHeJ_T0071811.1 MGP_C3HHeJ_G0029332.1 mouse_genomes_project 5 74436724 74517546 - MGP_C3HHeJ_P0071811 Scfd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071812.1 MGP_C3HHeJ_G0029332.1 mouse_genomes_project 5 74445292 74517576 - MGP_C3HHeJ_P0071812 Scfd2 protein_coding protein_coding MGP_C3HHeJ_T0071813.1 MGP_C3HHeJ_G0029332.1 mouse_genomes_project 5 74447405 74470513 - Scfd2 protein_coding retained_intron MGP_C3HHeJ_T0071814.1 MGP_C3HHeJ_G0029332.1 mouse_genomes_project 5 74500371 74517559 - Scfd2 protein_coding processed_transcript MGP_C3HHeJ_T0014901.1 MGP_C3HHeJ_G0013005.1 mouse_genomes_project 5 101788492 101788926 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071351.1 MGP_C3HHeJ_G0029252.1 mouse_genomes_project 5 52162720 52276059 - MGP_C3HHeJ_P0071351 Sel1l3 protein_coding protein_coding MGP_C3HHeJ_T0071352.1 MGP_C3HHeJ_G0029252.1 mouse_genomes_project 5 52201792 52275879 - Sel1l3 protein_coding retained_intron MGP_C3HHeJ_T0071353.1 MGP_C3HHeJ_G0029252.1 mouse_genomes_project 5 52212922 52216297 - Sel1l3 protein_coding retained_intron MGP_C3HHeJ_T0071354.1 MGP_C3HHeJ_G0029252.1 mouse_genomes_project 5 52215211 52232720 - Sel1l3 protein_coding processed_transcript MGP_C3HHeJ_T0071355.1 MGP_C3HHeJ_G0029252.1 mouse_genomes_project 5 52260793 52277278 - Sel1l3 protein_coding retained_intron MGP_C3HHeJ_T0098144.1 MGP_C3HHeJ_G0036356.1 mouse_genomes_project 5 52499295 52499405 + Gm26486 rRNA rRNA MGP_C3HHeJ_T0014810.1 MGP_C3HHeJ_G0012914.1 mouse_genomes_project 5 58339142 58340096 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014893.1 MGP_C3HHeJ_G0012997.1 mouse_genomes_project 5 97287342 97287753 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098585.1 MGP_C3HHeJ_G0036780.1 mouse_genomes_project 5 126520705 126526344 + Gm15751 sense_overlapping sense_overlapping MGP_C3HHeJ_T0004582.1 MGP_C3HHeJ_G0003963.1 mouse_genomes_project 5 28980905 28985541 - Gm15461 antisense antisense MGP_C3HHeJ_T0075603.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152638170 153013090 + MGP_C3HHeJ_P0075603 Mtus2 protein_coding protein_coding MGP_C3HHeJ_T0075604.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152638192 152763379 + MGP_C3HHeJ_P0075604 Mtus2 protein_coding protein_coding MGP_C3HHeJ_T0075605.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152769700 152923333 + Mtus2 protein_coding retained_intron MGP_C3HHeJ_T0075606.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152781853 152899191 + Mtus2 protein_coding processed_transcript MGP_C3HHeJ_T0075607.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152896276 153013087 + MGP_C3HHeJ_P0075607 Mtus2 protein_coding protein_coding MGP_C3HHeJ_T0075608.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152925684 152928865 + Mtus2 protein_coding retained_intron MGP_C3HHeJ_T0075609.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152954511 153011096 + MGP_C3HHeJ_P0075609 Mtus2 protein_coding protein_coding MGP_C3HHeJ_T0075610.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152954586 153010577 + MGP_C3HHeJ_P0075610 Mtus2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075611.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152954639 153011063 + MGP_C3HHeJ_P0075611 Mtus2 protein_coding protein_coding MGP_C3HHeJ_T0075612.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152992340 153010485 + MGP_C3HHeJ_P0075612 Mtus2 protein_coding protein_coding MGP_C3HHeJ_T0075613.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152992349 153011025 + MGP_C3HHeJ_P0075613 Mtus2 protein_coding protein_coding MGP_C3HHeJ_T0071011.1 MGP_C3HHeJ_G0029193.1 mouse_genomes_project 5 35260413 35262576 - MGP_C3HHeJ_P0071011 protein_coding protein_coding MGP_C3HHeJ_T0001621.1 MGP_C3HHeJ_G0001546.1 mouse_genomes_project 5 66148852 66151236 - TEC TEC MGP_C3HHeJ_T0074766.1 MGP_C3HHeJ_G0029908.1 mouse_genomes_project 5 140617833 140624796 + MGP_C3HHeJ_P0074766 Vgf protein_coding protein_coding MGP_C3HHeJ_T0074767.1 MGP_C3HHeJ_G0029908.1 mouse_genomes_project 5 140621739 140624796 + MGP_C3HHeJ_P0074767 Vgf protein_coding protein_coding MGP_C3HHeJ_T0074768.1 MGP_C3HHeJ_G0029908.1 mouse_genomes_project 5 140621808 140624473 + MGP_C3HHeJ_P0074768 Vgf protein_coding protein_coding MGP_C3HHeJ_T0074769.1 MGP_C3HHeJ_G0029908.1 mouse_genomes_project 5 140622145 140622852 + MGP_C3HHeJ_P0074769 Vgf protein_coding protein_coding MGP_C3HHeJ_T0004789.1 MGP_C3HHeJ_G0004115.1 mouse_genomes_project 5 139660709 139661414 - Gm43604 antisense antisense MGP_C3HHeJ_T0074909.1 MGP_C3HHeJ_G0029935.1 mouse_genomes_project 5 141395042 141405145 - MGP_C3HHeJ_P0074909 Nyap1 protein_coding protein_coding MGP_C3HHeJ_T0074910.1 MGP_C3HHeJ_G0029935.1 mouse_genomes_project 5 141396056 141406754 - MGP_C3HHeJ_P0074910 Nyap1 protein_coding protein_coding MGP_C3HHeJ_T0074911.1 MGP_C3HHeJ_G0029935.1 mouse_genomes_project 5 141396825 141404865 - MGP_C3HHeJ_P0074911 Nyap1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0074912.1 MGP_C3HHeJ_G0029935.1 mouse_genomes_project 5 141398024 141406249 - MGP_C3HHeJ_P0074912 Nyap1 protein_coding protein_coding MGP_C3HHeJ_T0014937.1 MGP_C3HHeJ_G0013041.1 mouse_genomes_project 5 111436530 111437107 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071838.1 MGP_C3HHeJ_G0029335.1 mouse_genomes_project 5 74989634 75040653 - MGP_C3HHeJ_P0071838 Chic2 protein_coding protein_coding MGP_C3HHeJ_T0071839.1 MGP_C3HHeJ_G0029335.1 mouse_genomes_project 5 75002864 75040191 - Chic2 protein_coding retained_intron MGP_C3HHeJ_T0001405.1 MGP_C3HHeJ_G0001335.1 mouse_genomes_project 5 5820324 5823939 + TEC TEC MGP_C3HHeJ_T0071458.1 MGP_C3HHeJ_G0029274.1 mouse_genomes_project 5 64806692 64881944 - MGP_C3HHeJ_P0071458 Rfc1 protein_coding protein_coding MGP_C3HHeJ_T0071459.1 MGP_C3HHeJ_G0029274.1 mouse_genomes_project 5 64806694 64882001 - MGP_C3HHeJ_P0071459 Rfc1 protein_coding protein_coding MGP_C3HHeJ_T0071460.1 MGP_C3HHeJ_G0029274.1 mouse_genomes_project 5 64806694 64882050 - MGP_C3HHeJ_P0071460 Rfc1 protein_coding protein_coding MGP_C3HHeJ_T0071461.1 MGP_C3HHeJ_G0029274.1 mouse_genomes_project 5 64807444 64881998 - MGP_C3HHeJ_P0071461 Rfc1 protein_coding protein_coding MGP_C3HHeJ_T0071462.1 MGP_C3HHeJ_G0029274.1 mouse_genomes_project 5 64807918 64813869 - MGP_C3HHeJ_P0071462 Rfc1 protein_coding protein_coding MGP_C3HHeJ_T0071463.1 MGP_C3HHeJ_G0029274.1 mouse_genomes_project 5 64809088 64818347 - Rfc1 protein_coding retained_intron MGP_C3HHeJ_T0071464.1 MGP_C3HHeJ_G0029274.1 mouse_genomes_project 5 64855274 64881993 - Rfc1 protein_coding retained_intron MGP_C3HHeJ_T0004812.1 MGP_C3HHeJ_G0004130.1 mouse_genomes_project 5 148116907 148176570 - Gm17135 antisense antisense MGP_C3HHeJ_T0070243.1 MGP_C3HHeJ_G0029072.1 mouse_genomes_project 5 27328376 27481983 - MGP_C3HHeJ_P0070243 Lmbr1 protein_coding protein_coding MGP_C3HHeJ_T0070244.1 MGP_C3HHeJ_G0029072.1 mouse_genomes_project 5 27328388 27481989 - MGP_C3HHeJ_P0070244 Lmbr1 protein_coding protein_coding MGP_C3HHeJ_T0070245.1 MGP_C3HHeJ_G0029072.1 mouse_genomes_project 5 27330693 27481901 - MGP_C3HHeJ_P0070245 Lmbr1 protein_coding protein_coding MGP_C3HHeJ_T0070246.1 MGP_C3HHeJ_G0029072.1 mouse_genomes_project 5 27330947 27481983 - MGP_C3HHeJ_P0070246 Lmbr1 protein_coding protein_coding MGP_C3HHeJ_T0070247.1 MGP_C3HHeJ_G0029072.1 mouse_genomes_project 5 27331415 27481929 - MGP_C3HHeJ_P0070247 Lmbr1 protein_coding protein_coding MGP_C3HHeJ_T0070248.1 MGP_C3HHeJ_G0029072.1 mouse_genomes_project 5 27333592 27395264 - MGP_C3HHeJ_P0070248 Lmbr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070249.1 MGP_C3HHeJ_G0029072.1 mouse_genomes_project 5 27358627 27463133 - Lmbr1 protein_coding processed_transcript MGP_C3HHeJ_T0074501.1 MGP_C3HHeJ_G0029858.1 mouse_genomes_project 5 138318677 138323660 - MGP_C3HHeJ_P0074501 Wbscr28 protein_coding protein_coding MGP_C3HHeJ_T0074502.1 MGP_C3HHeJ_G0029858.1 mouse_genomes_project 5 138318678 138323660 - MGP_C3HHeJ_P0074502 Wbscr28 protein_coding protein_coding MGP_C3HHeJ_T0001820.1 MGP_C3HHeJ_G0001743.1 mouse_genomes_project 5 135171740 135174702 - TEC TEC MGP_C3HHeJ_T0004565.1 MGP_C3HHeJ_G0003950.1 mouse_genomes_project 5 16800569 16827347 - 4921504A21Rik antisense antisense MGP_C3HHeJ_T0004566.1 MGP_C3HHeJ_G0003950.1 mouse_genomes_project 5 16801494 16826960 - 4921504A21Rik antisense antisense MGP_C3HHeJ_T0015028.1 MGP_C3HHeJ_G0013132.1 mouse_genomes_project 5 152084961 152085183 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004748.1 MGP_C3HHeJ_G0004086.1 mouse_genomes_project 5 125520322 125523707 + Gm43301 antisense antisense MGP_C3HHeJ_T0072975.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112762890 112789290 - MGP_C3HHeJ_P0072975 Ulk1 protein_coding protein_coding MGP_C3HHeJ_T0072976.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112765230 112767176 - MGP_C3HHeJ_P0072976 Ulk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072977.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112765252 112768284 - MGP_C3HHeJ_P0072977 Ulk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072978.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112765269 112766452 - Ulk1 protein_coding retained_intron MGP_C3HHeJ_T0072979.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112765324 112789246 - MGP_C3HHeJ_P0072979 Ulk1 protein_coding protein_coding MGP_C3HHeJ_T0072980.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112767121 112767898 - Ulk1 protein_coding retained_intron MGP_C3HHeJ_T0072981.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112767487 112768697 - Ulk1 protein_coding retained_intron MGP_C3HHeJ_T0072982.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112770630 112771425 - Ulk1 protein_coding retained_intron MGP_C3HHeJ_T0072983.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112770905 112772639 - Ulk1 protein_coding retained_intron MGP_C3HHeJ_T0072984.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112771628 112775030 - Ulk1 protein_coding processed_transcript MGP_C3HHeJ_T0072985.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112772834 112775067 - Ulk1 protein_coding retained_intron MGP_C3HHeJ_T0001688.1 MGP_C3HHeJ_G0001612.1 mouse_genomes_project 5 98079883 98080403 + TEC TEC MGP_C3HHeJ_T0001546.1 MGP_C3HHeJ_G0001472.1 mouse_genomes_project 5 48447660 48450769 - TEC TEC MGP_C3HHeJ_T0072110.1 MGP_C3HHeJ_G0029392.1 mouse_genomes_project 5 88388525 88411321 + MGP_C3HHeJ_P0072110 Prr27 protein_coding protein_coding MGP_C3HHeJ_T0072111.1 MGP_C3HHeJ_G0029392.1 mouse_genomes_project 5 88388525 88411321 + MGP_C3HHeJ_P0072111 Prr27 protein_coding protein_coding MGP_C3HHeJ_T0073417.1 MGP_C3HHeJ_G0029673.1 mouse_genomes_project 5 118378465 118389342 - MGP_C3HHeJ_P0073417 Prkab1 protein_coding protein_coding MGP_C3HHeJ_T0073418.1 MGP_C3HHeJ_G0029673.1 mouse_genomes_project 5 118378469 118389388 - MGP_C3HHeJ_P0073418 Prkab1 protein_coding protein_coding MGP_C3HHeJ_T0073419.1 MGP_C3HHeJ_G0029673.1 mouse_genomes_project 5 118379046 118380041 - Prkab1 protein_coding retained_intron MGP_C3HHeJ_T0073420.1 MGP_C3HHeJ_G0029673.1 mouse_genomes_project 5 118379195 118383091 - Prkab1 protein_coding retained_intron MGP_C3HHeJ_T0073421.1 MGP_C3HHeJ_G0029673.1 mouse_genomes_project 5 118379314 118389236 - MGP_C3HHeJ_P0073421 Prkab1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073422.1 MGP_C3HHeJ_G0029673.1 mouse_genomes_project 5 118379529 118389331 - MGP_C3HHeJ_P0073422 Prkab1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073423.1 MGP_C3HHeJ_G0029673.1 mouse_genomes_project 5 118382694 118389277 - Prkab1 protein_coding retained_intron MGP_C3HHeJ_T0073424.1 MGP_C3HHeJ_G0029673.1 mouse_genomes_project 5 118384586 118386526 - Prkab1 protein_coding retained_intron MGP_C3HHeJ_T0073425.1 MGP_C3HHeJ_G0029673.1 mouse_genomes_project 5 118388778 118389339 - Prkab1 protein_coding retained_intron MGP_C3HHeJ_T0073331.1 MGP_C3HHeJ_G0029660.1 mouse_genomes_project 5 117631649 117638748 + MGP_C3HHeJ_P0073331 Srsf9 protein_coding protein_coding MGP_C3HHeJ_T0073332.1 MGP_C3HHeJ_G0029660.1 mouse_genomes_project 5 117633323 117638677 + Srsf9 protein_coding processed_transcript MGP_C3HHeJ_T0073333.1 MGP_C3HHeJ_G0029660.1 mouse_genomes_project 5 117634307 117638318 + Srsf9 protein_coding processed_transcript MGP_C3HHeJ_T0073334.1 MGP_C3HHeJ_G0029660.1 mouse_genomes_project 5 117636245 117638677 + MGP_C3HHeJ_P0073334 Srsf9 protein_coding protein_coding MGP_C3HHeJ_T0073009.1 MGP_C3HHeJ_G0029597.1 mouse_genomes_project 5 114295402 114301403 - MGP_C3HHeJ_P0073009 Cryba4 protein_coding protein_coding MGP_C3HHeJ_T0073010.1 MGP_C3HHeJ_G0029597.1 mouse_genomes_project 5 114295403 114300051 - MGP_C3HHeJ_P0073010 Cryba4 protein_coding protein_coding MGP_C3HHeJ_T0073011.1 MGP_C3HHeJ_G0029597.1 mouse_genomes_project 5 114295442 114300691 - MGP_C3HHeJ_P0073011 Cryba4 protein_coding protein_coding MGP_C3HHeJ_T0099479.1 MGP_C3HHeJ_G0037673.1 mouse_genomes_project 5 120445664 120445771 - Gm25343 snRNA snRNA MGP_C3HHeJ_T0008040.1 MGP_C3HHeJ_G0006547.1 mouse_genomes_project 5 43517545 43530192 + Gm42750 lincRNA lincRNA MGP_C3HHeJ_T0001400.1 MGP_C3HHeJ_G0001330.1 mouse_genomes_project 5 2770531 2772468 + TEC TEC MGP_C3HHeJ_T0072059.1 MGP_C3HHeJ_G0029380.1 mouse_genomes_project 5 87771729 87785826 - MGP_C3HHeJ_P0072059 Ugt2b37 protein_coding protein_coding MGP_C3HHeJ_T0004554.1 MGP_C3HHeJ_G0003940.1 mouse_genomes_project 5 361533 362981 - Gm42435 antisense antisense MGP_C3HHeJ_T0098503.1 MGP_C3HHeJ_G0036708.1 mouse_genomes_project 5 125327052 125329627 + Gm42829 sense_intronic sense_intronic MGP_C3HHeJ_T0001791.1 MGP_C3HHeJ_G0001714.1 mouse_genomes_project 5 127586169 127587533 + TEC TEC MGP_C3HHeJ_T0001566.1 MGP_C3HHeJ_G0001492.1 mouse_genomes_project 5 54666223 54669934 + TEC TEC MGP_C3HHeJ_T0014952.1 MGP_C3HHeJ_G0013056.1 mouse_genomes_project 5 117141949 117142294 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074913.1 MGP_C3HHeJ_G0029936.1 mouse_genomes_project 5 141410814 141433805 + MGP_C3HHeJ_P0074913 Tsc22d4 protein_coding protein_coding MGP_C3HHeJ_T0074914.1 MGP_C3HHeJ_G0029936.1 mouse_genomes_project 5 141411043 141418390 + Tsc22d4 protein_coding retained_intron MGP_C3HHeJ_T0074915.1 MGP_C3HHeJ_G0029936.1 mouse_genomes_project 5 141411080 141427072 + MGP_C3HHeJ_P0074915 Tsc22d4 protein_coding protein_coding MGP_C3HHeJ_T0074916.1 MGP_C3HHeJ_G0029936.1 mouse_genomes_project 5 141416843 141424562 + Tsc22d4 protein_coding retained_intron MGP_C3HHeJ_T0074917.1 MGP_C3HHeJ_G0029936.1 mouse_genomes_project 5 141423808 141425212 + MGP_C3HHeJ_P0074917 Tsc22d4 protein_coding protein_coding MGP_C3HHeJ_T0074918.1 MGP_C3HHeJ_G0029936.1 mouse_genomes_project 5 141423848 141425096 + MGP_C3HHeJ_P0074918 Tsc22d4 protein_coding protein_coding MGP_C3HHeJ_T0074919.1 MGP_C3HHeJ_G0029936.1 mouse_genomes_project 5 141427362 141433754 + MGP_C3HHeJ_P0074919 Tsc22d4 protein_coding protein_coding MGP_C3HHeJ_T0074920.1 MGP_C3HHeJ_G0029936.1 mouse_genomes_project 5 141427373 141433754 + MGP_C3HHeJ_P0074920 Tsc22d4 protein_coding protein_coding MGP_C3HHeJ_T0074921.1 MGP_C3HHeJ_G0029936.1 mouse_genomes_project 5 141433051 141433644 + Tsc22d4 protein_coding processed_transcript MGP_C3HHeJ_T0014878.1 MGP_C3HHeJ_G0012982.1 mouse_genomes_project 5 89458909 89460539 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017938.1 MGP_C3HHeJ_G0015364.1 mouse_genomes_project 5 73996060 73996626 + Usp46os2 processed_transcript retained_intron MGP_C3HHeJ_T0017939.1 MGP_C3HHeJ_G0015364.1 mouse_genomes_project 5 73996061 73996626 + Usp46os2 processed_transcript processed_transcript MGP_C3HHeJ_T0017940.1 MGP_C3HHeJ_G0015364.1 mouse_genomes_project 5 73996066 74004816 + Usp46os2 processed_transcript antisense MGP_C3HHeJ_T0072125.1 MGP_C3HHeJ_G0029399.1 mouse_genomes_project 5 88669786 88714588 + MGP_C3HHeJ_P0072125 Smr2 protein_coding protein_coding MGP_C3HHeJ_T0004577.1 MGP_C3HHeJ_G0003960.1 mouse_genomes_project 5 25632811 25634136 - Gm16058 antisense antisense MGP_C3HHeJ_T0008129.1 MGP_C3HHeJ_G0006622.1 mouse_genomes_project 5 98484409 98507371 + Gm33969 lincRNA lincRNA MGP_C3HHeJ_T0074959.1 MGP_C3HHeJ_G0029949.1 mouse_genomes_project 5 141805957 141825439 + MGP_C3HHeJ_P0074959 Zscan21 protein_coding protein_coding MGP_C3HHeJ_T0074960.1 MGP_C3HHeJ_G0029949.1 mouse_genomes_project 5 141805970 141825491 + MGP_C3HHeJ_P0074960 Zscan21 protein_coding protein_coding MGP_C3HHeJ_T0074961.1 MGP_C3HHeJ_G0029949.1 mouse_genomes_project 5 141805991 141825440 + MGP_C3HHeJ_P0074961 Zscan21 protein_coding protein_coding MGP_C3HHeJ_T0074962.1 MGP_C3HHeJ_G0029949.1 mouse_genomes_project 5 141805991 141825491 + MGP_C3HHeJ_P0074962 Zscan21 protein_coding protein_coding MGP_C3HHeJ_T0074963.1 MGP_C3HHeJ_G0029949.1 mouse_genomes_project 5 141806034 141824473 + MGP_C3HHeJ_P0074963 Zscan21 protein_coding protein_coding MGP_C3HHeJ_T0074964.1 MGP_C3HHeJ_G0029949.1 mouse_genomes_project 5 141806036 141815584 + MGP_C3HHeJ_P0074964 Zscan21 protein_coding protein_coding MGP_C3HHeJ_T0074965.1 MGP_C3HHeJ_G0029949.1 mouse_genomes_project 5 141806095 141825442 + MGP_C3HHeJ_P0074965 Zscan21 protein_coding protein_coding MGP_C3HHeJ_T0004569.1 MGP_C3HHeJ_G0003953.1 mouse_genomes_project 5 20087639 20089316 + Gm16110 antisense antisense MGP_C3HHeJ_T0075257.1 MGP_C3HHeJ_G0030013.1 mouse_genomes_project 5 146855504 146878168 + MGP_C3HHeJ_P0075257 Slc29a4 protein_coding protein_coding MGP_C3HHeJ_T0075258.1 MGP_C3HHeJ_G0030013.1 mouse_genomes_project 5 146866628 146890345 + MGP_C3HHeJ_P0075258 Slc29a4 protein_coding protein_coding MGP_C3HHeJ_T0074895.1 MGP_C3HHeJ_G0029932.1 mouse_genomes_project 5 141288421 141289955 + MGP_C3HHeJ_P0074895 Sap25 protein_coding protein_coding MGP_C3HHeJ_T0074896.1 MGP_C3HHeJ_G0029932.1 mouse_genomes_project 5 141288524 141289989 + MGP_C3HHeJ_P0074896 Sap25 protein_coding protein_coding MGP_C3HHeJ_T0074897.1 MGP_C3HHeJ_G0029932.1 mouse_genomes_project 5 141288582 141289428 + Sap25 protein_coding retained_intron MGP_C3HHeJ_T0074898.1 MGP_C3HHeJ_G0029932.1 mouse_genomes_project 5 141289030 141289634 + Sap25 protein_coding retained_intron MGP_C3HHeJ_T0074899.1 MGP_C3HHeJ_G0029932.1 mouse_genomes_project 5 141289264 141289924 + Sap25 protein_coding retained_intron MGP_C3HHeJ_T0074900.1 MGP_C3HHeJ_G0029932.1 mouse_genomes_project 5 141289435 141289986 + Sap25 protein_coding retained_intron MGP_C3HHeJ_T0010622.1 MGP_C3HHeJ_G0008755.1 mouse_genomes_project 5 116952555 116952619 + Mir7028 miRNA miRNA MGP_C3HHeJ_T0072263.1 MGP_C3HHeJ_G0029442.1 mouse_genomes_project 5 92933703 93001052 + MGP_C3HHeJ_P0072263 Uso1 protein_coding protein_coding MGP_C3HHeJ_T0072264.1 MGP_C3HHeJ_G0029442.1 mouse_genomes_project 5 92933711 93001055 + MGP_C3HHeJ_P0072264 Uso1 protein_coding protein_coding MGP_C3HHeJ_T0072265.1 MGP_C3HHeJ_G0029442.1 mouse_genomes_project 5 92933712 92981611 + Uso1 protein_coding retained_intron MGP_C3HHeJ_T0072266.1 MGP_C3HHeJ_G0029442.1 mouse_genomes_project 5 92933731 93001053 + MGP_C3HHeJ_P0072266 Uso1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072267.1 MGP_C3HHeJ_G0029442.1 mouse_genomes_project 5 92978944 93001032 + Uso1 protein_coding processed_transcript MGP_C3HHeJ_T0007994.1 MGP_C3HHeJ_G0006516.1 mouse_genomes_project 5 27482297 27495333 + 4632411P08Rik lincRNA lincRNA MGP_C3HHeJ_T0102053.1 MGP_C3HHeJ_G0040018.1 mouse_genomes_project 5 128916536 128917219 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014874.1 MGP_C3HHeJ_G0012978.1 mouse_genomes_project 5 88752934 88753289 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008127.1 MGP_C3HHeJ_G0006620.1 mouse_genomes_project 5 98292607 98299409 + Gm43146 lincRNA lincRNA MGP_C3HHeJ_T0001551.1 MGP_C3HHeJ_G0001477.1 mouse_genomes_project 5 50480031 50482517 - TEC TEC MGP_C3HHeJ_T0072358.1 MGP_C3HHeJ_G0029459.1 mouse_genomes_project 5 94050576 94057580 + MGP_C3HHeJ_P0072358 2010109A12Rik protein_coding protein_coding MGP_C3HHeJ_T0072359.1 MGP_C3HHeJ_G0029459.1 mouse_genomes_project 5 94050591 94051508 + 2010109A12Rik protein_coding retained_intron MGP_C3HHeJ_T0008307.1 MGP_C3HHeJ_G0006735.1 mouse_genomes_project 5 130699383 130700756 + Gm42980 lincRNA lincRNA MGP_C3HHeJ_T0073358.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117840756 117894031 + MGP_C3HHeJ_P0073358 Pxn protein_coding protein_coding MGP_C3HHeJ_T0073359.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117840791 117894026 + Pxn protein_coding retained_intron MGP_C3HHeJ_T0073360.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117840888 117893022 + MGP_C3HHeJ_P0073360 Pxn protein_coding protein_coding MGP_C3HHeJ_T0073361.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117840936 117887195 + MGP_C3HHeJ_P0073361 Pxn protein_coding protein_coding MGP_C3HHeJ_T0073362.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117850443 117882939 + Pxn protein_coding processed_transcript MGP_C3HHeJ_T0073363.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117855292 117894026 + Pxn protein_coding processed_transcript MGP_C3HHeJ_T0073364.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117882002 117883468 + Pxn protein_coding processed_transcript MGP_C3HHeJ_T0073365.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117882140 117892545 + MGP_C3HHeJ_P0073365 Pxn protein_coding protein_coding MGP_C3HHeJ_T0073366.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117882169 117883004 + Pxn protein_coding retained_intron MGP_C3HHeJ_T0073367.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117882851 117887812 + Pxn protein_coding retained_intron MGP_C3HHeJ_T0073368.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117883359 117883831 + Pxn protein_coding retained_intron MGP_C3HHeJ_T0073369.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117889982 117890836 + Pxn protein_coding retained_intron MGP_C3HHeJ_T0070512.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29443577 29454281 + MGP_C3HHeJ_P0070512 Nrbp1 protein_coding protein_coding MGP_C3HHeJ_T0070513.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29443577 29454275 + MGP_C3HHeJ_P0070513 Nrbp1 protein_coding protein_coding MGP_C3HHeJ_T0070514.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29443590 29447664 + MGP_C3HHeJ_P0070514 Nrbp1 protein_coding protein_coding MGP_C3HHeJ_T0070515.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29443608 29448550 + Nrbp1 protein_coding retained_intron MGP_C3HHeJ_T0070516.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29443616 29447585 + MGP_C3HHeJ_P0070516 Nrbp1 protein_coding protein_coding MGP_C3HHeJ_T0070517.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29443645 29450629 + MGP_C3HHeJ_P0070517 Nrbp1 protein_coding protein_coding MGP_C3HHeJ_T0070518.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29446130 29447139 + Nrbp1 protein_coding retained_intron MGP_C3HHeJ_T0070519.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29450137 29452696 + Nrbp1 protein_coding retained_intron MGP_C3HHeJ_T0070520.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29452069 29454278 + Nrbp1 protein_coding retained_intron MGP_C3HHeJ_T0070521.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29452305 29453448 + Nrbp1 protein_coding retained_intron MGP_C3HHeJ_T0070522.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29453059 29454164 + Nrbp1 protein_coding retained_intron MGP_C3HHeJ_T0008108.1 MGP_C3HHeJ_G0006601.1 mouse_genomes_project 5 84891097 84894895 + Gm43532 lincRNA lincRNA MGP_C3HHeJ_T0098155.1 MGP_C3HHeJ_G0036367.1 mouse_genomes_project 5 153472674 153472792 - n-R5s179 rRNA rRNA MGP_C3HHeJ_T0070445.1 MGP_C3HHeJ_G0029108.1 mouse_genomes_project 5 29307485 29328279 + MGP_C3HHeJ_P0070445 Trim54 protein_coding protein_coding MGP_C3HHeJ_T0070446.1 MGP_C3HHeJ_G0029108.1 mouse_genomes_project 5 29307507 29328281 + MGP_C3HHeJ_P0070446 Trim54 protein_coding protein_coding MGP_C3HHeJ_T0014897.1 MGP_C3HHeJ_G0013001.1 mouse_genomes_project 5 99646865 99647246 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075133.1 MGP_C3HHeJ_G0029983.1 mouse_genomes_project 5 143418109 143431436 - MGP_C3HHeJ_P0075133 Zfand2a protein_coding protein_coding MGP_C3HHeJ_T0075134.1 MGP_C3HHeJ_G0029983.1 mouse_genomes_project 5 143418113 143431404 - MGP_C3HHeJ_P0075134 Zfand2a protein_coding protein_coding MGP_C3HHeJ_T0075135.1 MGP_C3HHeJ_G0029983.1 mouse_genomes_project 5 143421819 143425844 - Zfand2a protein_coding processed_transcript MGP_C3HHeJ_T0075136.1 MGP_C3HHeJ_G0029983.1 mouse_genomes_project 5 143425382 143431351 - MGP_C3HHeJ_P0075136 Zfand2a protein_coding protein_coding MGP_C3HHeJ_T0075137.1 MGP_C3HHeJ_G0029983.1 mouse_genomes_project 5 143425977 143431315 - Zfand2a protein_coding processed_transcript MGP_C3HHeJ_T0071827.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74582193 74670880 - MGP_C3HHeJ_P0071827 Lnx1 protein_coding protein_coding MGP_C3HHeJ_T0071828.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74582193 74670879 - MGP_C3HHeJ_P0071828 Lnx1 protein_coding protein_coding MGP_C3HHeJ_T0071829.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74582193 74679673 - MGP_C3HHeJ_P0071829 Lnx1 protein_coding protein_coding MGP_C3HHeJ_T0071830.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74582425 74670865 - MGP_C3HHeJ_P0071830 Lnx1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071832.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74586850 74670807 - MGP_C3HHeJ_P0071832 Lnx1 protein_coding protein_coding MGP_C3HHeJ_T0071833.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74586850 74670636 - MGP_C3HHeJ_P0071833 Lnx1 protein_coding protein_coding MGP_C3HHeJ_T0071834.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74586850 74670880 - MGP_C3HHeJ_P0071834 Lnx1 protein_coding protein_coding MGP_C3HHeJ_T0071835.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74586850 74697571 - MGP_C3HHeJ_P0071835 Lnx1 protein_coding protein_coding MGP_C3HHeJ_T0071836.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74587522 74612991 - MGP_C3HHeJ_P0071836 Lnx1 protein_coding protein_coding MGP_C3HHeJ_T0071837.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74598592 74670606 - MGP_C3HHeJ_P0071837 Lnx1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0004823.1 MGP_C3HHeJ_G0004138.1 mouse_genomes_project 5 154280739 154332247 - Gm15997 antisense antisense MGP_C3HHeJ_T0075478.1 MGP_C3HHeJ_G0030058.1 mouse_genomes_project 5 149445682 149454037 - MGP_C3HHeJ_P0075478 Atp5j2 protein_coding protein_coding MGP_C3HHeJ_T0075479.1 MGP_C3HHeJ_G0030058.1 mouse_genomes_project 5 149445690 149453567 - MGP_C3HHeJ_P0075479 Atp5j2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075480.1 MGP_C3HHeJ_G0030058.1 mouse_genomes_project 5 149445693 149453567 - MGP_C3HHeJ_P0075480 Atp5j2 protein_coding protein_coding MGP_C3HHeJ_T0075481.1 MGP_C3HHeJ_G0030058.1 mouse_genomes_project 5 149446370 149453486 - MGP_C3HHeJ_P0075481 Atp5j2 protein_coding protein_coding MGP_C3HHeJ_T0075482.1 MGP_C3HHeJ_G0030058.1 mouse_genomes_project 5 149451401 149453503 - Atp5j2 protein_coding retained_intron MGP_C3HHeJ_T0071999.1 MGP_C3HHeJ_G0029361.1 mouse_genomes_project 5 83694228 83773104 - MGP_C3HHeJ_P0071999 Tecrl protein_coding protein_coding MGP_C3HHeJ_T0072000.1 MGP_C3HHeJ_G0029361.1 mouse_genomes_project 5 83708718 83772865 - MGP_C3HHeJ_P0072000 Tecrl protein_coding protein_coding MGP_C3HHeJ_T0004624.1 MGP_C3HHeJ_G0003996.1 mouse_genomes_project 5 52603708 52607178 - Gm10441 antisense antisense MGP_C3HHeJ_T0071515.1 MGP_C3HHeJ_G0029283.1 mouse_genomes_project 5 65342164 65412610 + MGP_C3HHeJ_P0071515 N4bp2 protein_coding protein_coding MGP_C3HHeJ_T0071516.1 MGP_C3HHeJ_G0029283.1 mouse_genomes_project 5 65342622 65366069 + N4bp2 protein_coding processed_transcript MGP_C3HHeJ_T0071517.1 MGP_C3HHeJ_G0029283.1 mouse_genomes_project 5 65342622 65355331 + N4bp2 protein_coding retained_intron MGP_C3HHeJ_T0071518.1 MGP_C3HHeJ_G0029283.1 mouse_genomes_project 5 65342763 65399013 + MGP_C3HHeJ_P0071518 N4bp2 protein_coding protein_coding MGP_C3HHeJ_T0071519.1 MGP_C3HHeJ_G0029283.1 mouse_genomes_project 5 65362757 65364911 + N4bp2 protein_coding retained_intron MGP_C3HHeJ_T0071520.1 MGP_C3HHeJ_G0029283.1 mouse_genomes_project 5 65365942 65409152 + MGP_C3HHeJ_P0071520 N4bp2 protein_coding protein_coding MGP_C3HHeJ_T0071521.1 MGP_C3HHeJ_G0029283.1 mouse_genomes_project 5 65381856 65384972 + N4bp2 protein_coding retained_intron MGP_C3HHeJ_T0071522.1 MGP_C3HHeJ_G0029283.1 mouse_genomes_project 5 65390483 65395808 + N4bp2 protein_coding retained_intron MGP_C3HHeJ_T0071523.1 MGP_C3HHeJ_G0029283.1 mouse_genomes_project 5 65407743 65409376 + N4bp2 protein_coding retained_intron MGP_C3HHeJ_T0011518.1 MGP_C3HHeJ_G0009651.1 mouse_genomes_project 5 137535819 137536107 + Gm24139 misc_RNA misc_RNA MGP_C3HHeJ_T0073638.1 MGP_C3HHeJ_G0029723.1 mouse_genomes_project 5 124287721 124291059 - MGP_C3HHeJ_P0073638 Adam1b protein_coding protein_coding MGP_C3HHeJ_T0008018.1 MGP_C3HHeJ_G0006531.1 mouse_genomes_project 5 36302853 36303626 + Gm43763 lincRNA lincRNA MGP_C3HHeJ_T0072629.1 MGP_C3HHeJ_G0029522.1 mouse_genomes_project 5 106864778 106884111 - MGP_C3HHeJ_P0072629 protein_coding protein_coding MGP_C3HHeJ_T0072631.1 MGP_C3HHeJ_G0029522.1 mouse_genomes_project 5 106869560 106871652 - protein_coding retained_intron MGP_C3HHeJ_T0001726.1 MGP_C3HHeJ_G0001650.1 mouse_genomes_project 5 114421313 114422574 + TEC TEC MGP_C3HHeJ_T0099489.1 MGP_C3HHeJ_G0037683.1 mouse_genomes_project 5 139375216 139375323 + Gm22450 snRNA snRNA MGP_C3HHeJ_T0001401.1 MGP_C3HHeJ_G0001331.1 mouse_genomes_project 5 4333635 4336030 - TEC TEC MGP_C3HHeJ_T0014746.1 MGP_C3HHeJ_G0012850.1 mouse_genomes_project 5 27845583 27845962 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010596.1 MGP_C3HHeJ_G0008729.1 mouse_genomes_project 5 63588735 63588813 - Gm23967 miRNA miRNA MGP_C3HHeJ_T0001739.1 MGP_C3HHeJ_G0001663.1 mouse_genomes_project 5 117323536 117324851 + TEC TEC MGP_C3HHeJ_T0071893.1 MGP_C3HHeJ_G0029346.1 mouse_genomes_project 5 76634118 76692489 + Cep135 protein_coding retained_intron MGP_C3HHeJ_T0071894.1 MGP_C3HHeJ_G0029346.1 mouse_genomes_project 5 76634121 76694047 + MGP_C3HHeJ_P0071894 Cep135 protein_coding protein_coding MGP_C3HHeJ_T0071895.1 MGP_C3HHeJ_G0029346.1 mouse_genomes_project 5 76637134 76694046 + MGP_C3HHeJ_P0071895 Cep135 protein_coding protein_coding MGP_C3HHeJ_T0004698.1 MGP_C3HHeJ_G0004050.1 mouse_genomes_project 5 112185160 112185754 - Gm43137 antisense antisense MGP_C3HHeJ_T0015033.1 MGP_C3HHeJ_G0013137.1 mouse_genomes_project 5 154294181 154294731 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099434.1 MGP_C3HHeJ_G0037628.1 mouse_genomes_project 5 37052811 37052947 + Gm22249 snRNA snRNA MGP_C3HHeJ_T0071158.1 MGP_C3HHeJ_G0029222.1 mouse_genomes_project 5 42103949 42207670 + MGP_C3HHeJ_P0071158 C1qtnf7 protein_coding protein_coding MGP_C3HHeJ_T0071159.1 MGP_C3HHeJ_G0029222.1 mouse_genomes_project 5 42104173 42197652 + MGP_C3HHeJ_P0071159 C1qtnf7 protein_coding protein_coding MGP_C3HHeJ_T0071160.1 MGP_C3HHeJ_G0029222.1 mouse_genomes_project 5 42190301 42205453 + MGP_C3HHeJ_P0071160 C1qtnf7 protein_coding protein_coding MGP_C3HHeJ_T0001857.1 MGP_C3HHeJ_G0001779.1 mouse_genomes_project 5 145406567 145407248 - TEC TEC MGP_C3HHeJ_T0008181.1 MGP_C3HHeJ_G0006659.1 mouse_genomes_project 5 110147510 110147985 - Gm42517 lincRNA lincRNA MGP_C3HHeJ_T0074886.1 MGP_C3HHeJ_G0029930.1 mouse_genomes_project 5 141276212 141288182 + MGP_C3HHeJ_P0074886 protein_coding protein_coding MGP_C3HHeJ_T0074887.1 MGP_C3HHeJ_G0029930.1 mouse_genomes_project 5 141276234 141283887 + protein_coding retained_intron MGP_C3HHeJ_T0074888.1 MGP_C3HHeJ_G0029930.1 mouse_genomes_project 5 141276243 141284702 + MGP_C3HHeJ_P0074888 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074890.1 MGP_C3HHeJ_G0029930.1 mouse_genomes_project 5 141276269 141288187 + MGP_C3HHeJ_P0074890 protein_coding protein_coding MGP_C3HHeJ_T0074891.1 MGP_C3HHeJ_G0029930.1 mouse_genomes_project 5 141276269 141280979 + MGP_C3HHeJ_P0074891 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074892.1 MGP_C3HHeJ_G0029930.1 mouse_genomes_project 5 141277221 141287268 + MGP_C3HHeJ_P0074892 protein_coding protein_coding MGP_C3HHeJ_T0074893.1 MGP_C3HHeJ_G0029930.1 mouse_genomes_project 5 141285407 141286451 + MGP_C3HHeJ_P0074893 protein_coding protein_coding MGP_C3HHeJ_T0074894.1 MGP_C3HHeJ_G0029930.1 mouse_genomes_project 5 141286453 141287327 + MGP_C3HHeJ_P0074894 protein_coding protein_coding MGP_C3HHeJ_T0014791.1 MGP_C3HHeJ_G0012895.1 mouse_genomes_project 5 49458900 49459642 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008196.1 MGP_C3HHeJ_G0006666.1 mouse_genomes_project 5 113577013 113583518 + C130026L21Rik lincRNA lincRNA MGP_C3HHeJ_T0008197.1 MGP_C3HHeJ_G0006666.1 mouse_genomes_project 5 113577152 113582726 + C130026L21Rik lincRNA lincRNA MGP_C3HHeJ_T0008198.1 MGP_C3HHeJ_G0006666.1 mouse_genomes_project 5 113577159 113578465 + C130026L21Rik lincRNA lincRNA MGP_C3HHeJ_T0008199.1 MGP_C3HHeJ_G0006666.1 mouse_genomes_project 5 113578022 113601193 + C130026L21Rik lincRNA lincRNA MGP_C3HHeJ_T0014851.1 MGP_C3HHeJ_G0012955.1 mouse_genomes_project 5 76490163 76491237 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101216.1 MGP_C3HHeJ_G0039350.1 mouse_genomes_project 5 27316438 27317280 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0070830.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 32994074 33054159 + MGP_C3HHeJ_P0070830 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070831.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 32994175 33027011 + MGP_C3HHeJ_P0070831 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070832.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 32994179 33027011 + MGP_C3HHeJ_P0070832 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070833.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 32994214 33022743 + Add1 protein_coding processed_transcript MGP_C3HHeJ_T0070834.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 32994273 33054156 + MGP_C3HHeJ_P0070834 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070835.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 32994283 33054159 + MGP_C3HHeJ_P0070835 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070836.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 32994452 33054145 + MGP_C3HHeJ_P0070836 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070837.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 33017458 33020231 + Add1 protein_coding retained_intron MGP_C3HHeJ_T0070838.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 33022459 33052667 + MGP_C3HHeJ_P0070838 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070839.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 33036098 33047170 + MGP_C3HHeJ_P0070839 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070840.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 33038476 33042302 + Add1 protein_coding retained_intron MGP_C3HHeJ_T0070841.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 33038617 33052482 + MGP_C3HHeJ_P0070841 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070842.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 33041204 33054159 + MGP_C3HHeJ_P0070842 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070843.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 33041699 33052592 + Add1 protein_coding retained_intron MGP_C3HHeJ_T0070844.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 33041821 33050594 + Add1 protein_coding retained_intron MGP_C3HHeJ_T0072061.1 MGP_C3HHeJ_G0029382.1 mouse_genomes_project 5 88015658 88047714 - MGP_C3HHeJ_P0072061 Ugt2a1 protein_coding protein_coding MGP_C3HHeJ_T0004561.1 MGP_C3HHeJ_G0003947.1 mouse_genomes_project 5 11971981 11992116 - Gm26918 antisense antisense MGP_C3HHeJ_T0004609.1 MGP_C3HHeJ_G0003985.1 mouse_genomes_project 5 42714202 42716274 + Gm16401 antisense antisense MGP_C3HHeJ_T0004610.1 MGP_C3HHeJ_G0003985.1 mouse_genomes_project 5 42714202 42716276 + Gm16401 antisense antisense MGP_C3HHeJ_T0075671.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154418399 154441575 - MGP_C3HHeJ_P0075671 Hsph1 protein_coding protein_coding MGP_C3HHeJ_T0075672.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154420656 154441742 - MGP_C3HHeJ_P0075672 Hsph1 protein_coding protein_coding MGP_C3HHeJ_T0075673.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154420957 154441613 - MGP_C3HHeJ_P0075673 Hsph1 protein_coding protein_coding MGP_C3HHeJ_T0075674.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154421281 154441742 - MGP_C3HHeJ_P0075674 Hsph1 protein_coding protein_coding MGP_C3HHeJ_T0075675.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154421567 154423286 - Hsph1 protein_coding retained_intron MGP_C3HHeJ_T0075676.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154424005 154425300 - Hsph1 protein_coding retained_intron MGP_C3HHeJ_T0075677.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154424794 154441742 - Hsph1 protein_coding retained_intron MGP_C3HHeJ_T0075678.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154435387 154441780 - MGP_C3HHeJ_P0075678 Hsph1 protein_coding protein_coding MGP_C3HHeJ_T0075679.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154435843 154441694 - MGP_C3HHeJ_P0075679 Hsph1 protein_coding protein_coding MGP_C3HHeJ_T0075680.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154437442 154441755 - MGP_C3HHeJ_P0075680 Hsph1 protein_coding protein_coding MGP_C3HHeJ_T0075681.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154437501 154439291 - Hsph1 protein_coding processed_transcript MGP_C3HHeJ_T0001421.1 MGP_C3HHeJ_G0001351.1 mouse_genomes_project 5 11696629 11699509 + TEC TEC MGP_C3HHeJ_T0008006.1 MGP_C3HHeJ_G0006525.1 mouse_genomes_project 5 32334340 32337043 + lincRNA lincRNA MGP_C3HHeJ_T0008156.1 MGP_C3HHeJ_G0006640.1 mouse_genomes_project 5 104697253 104698958 + Gm42618 lincRNA lincRNA MGP_C3HHeJ_T0074098.1 MGP_C3HHeJ_G0029789.1 mouse_genomes_project 5 127517795 127532633 - MGP_C3HHeJ_P0074098 Rilpl2 protein_coding protein_coding MGP_C3HHeJ_T0074099.1 MGP_C3HHeJ_G0029789.1 mouse_genomes_project 5 127529559 127532577 - Rilpl2 protein_coding retained_intron MGP_C3HHeJ_T0014948.1 MGP_C3HHeJ_G0013052.1 mouse_genomes_project 5 116292657 116293722 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008340.1 MGP_C3HHeJ_G0006758.1 mouse_genomes_project 5 143873851 143881391 + Gm42423 lincRNA lincRNA MGP_C3HHeJ_T0073540.1 MGP_C3HHeJ_G0029700.1 mouse_genomes_project 5 123118300 123142163 + MGP_C3HHeJ_P0073540 Slc8b1 protein_coding protein_coding MGP_C3HHeJ_T0073541.1 MGP_C3HHeJ_G0029700.1 mouse_genomes_project 5 123118367 123142158 + MGP_C3HHeJ_P0073541 Slc8b1 protein_coding protein_coding MGP_C3HHeJ_T0073542.1 MGP_C3HHeJ_G0029700.1 mouse_genomes_project 5 123118384 123142159 + MGP_C3HHeJ_P0073542 Slc8b1 protein_coding protein_coding MGP_C3HHeJ_T0073543.1 MGP_C3HHeJ_G0029700.1 mouse_genomes_project 5 123118402 123120320 + MGP_C3HHeJ_P0073543 Slc8b1 protein_coding protein_coding MGP_C3HHeJ_T0073544.1 MGP_C3HHeJ_G0029700.1 mouse_genomes_project 5 123119999 123126871 + MGP_C3HHeJ_P0073544 Slc8b1 protein_coding protein_coding MGP_C3HHeJ_T0073545.1 MGP_C3HHeJ_G0029700.1 mouse_genomes_project 5 123120274 123141196 + MGP_C3HHeJ_P0073545 Slc8b1 protein_coding protein_coding MGP_C3HHeJ_T0073546.1 MGP_C3HHeJ_G0029700.1 mouse_genomes_project 5 123127898 123129340 + Slc8b1 protein_coding retained_intron MGP_C3HHeJ_T0008233.1 MGP_C3HHeJ_G0006686.1 mouse_genomes_project 5 117668317 117714790 + Gm13832 lincRNA lincRNA MGP_C3HHeJ_T0008234.1 MGP_C3HHeJ_G0006686.1 mouse_genomes_project 5 117668336 117742605 + Gm13832 lincRNA lincRNA MGP_C3HHeJ_T0098149.1 MGP_C3HHeJ_G0036361.1 mouse_genomes_project 5 109083205 109083324 + n-R5s173 rRNA rRNA MGP_C3HHeJ_T0008050.1 MGP_C3HHeJ_G0006556.1 mouse_genomes_project 5 51358924 51359199 - Gm43179 lincRNA lincRNA MGP_C3HHeJ_T0075510.1 MGP_C3HHeJ_G0030069.1 mouse_genomes_project 5 150661228 150663074 - protein_coding retained_intron MGP_C3HHeJ_T0071476.1 MGP_C3HHeJ_G0029277.1 mouse_genomes_project 5 64941142 64946884 + Lias protein_coding retained_intron MGP_C3HHeJ_T0071477.1 MGP_C3HHeJ_G0029277.1 mouse_genomes_project 5 64941162 64946314 + Lias protein_coding retained_intron MGP_C3HHeJ_T0071478.1 MGP_C3HHeJ_G0029277.1 mouse_genomes_project 5 64941163 64948386 + MGP_C3HHeJ_P0071478 Lias protein_coding protein_coding MGP_C3HHeJ_T0071479.1 MGP_C3HHeJ_G0029277.1 mouse_genomes_project 5 64941227 64959581 + MGP_C3HHeJ_P0071479 Lias protein_coding protein_coding MGP_C3HHeJ_T0071480.1 MGP_C3HHeJ_G0029277.1 mouse_genomes_project 5 64948241 64950615 + Lias protein_coding retained_intron MGP_C3HHeJ_T0014883.1 MGP_C3HHeJ_G0012987.1 mouse_genomes_project 5 91494949 91495263 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074245.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132703086 132775267 + MGP_C3HHeJ_P0074245 Sfswap protein_coding protein_coding MGP_C3HHeJ_T0074246.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132703105 132773531 + MGP_C3HHeJ_P0074246 Sfswap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074247.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132703111 132706509 + Sfswap protein_coding retained_intron MGP_C3HHeJ_T0074248.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132703116 132775264 + Sfswap protein_coding processed_transcript MGP_C3HHeJ_T0074249.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132703314 132706247 + MGP_C3HHeJ_P0074249 Sfswap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074250.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132704259 132704914 + Sfswap protein_coding TEC MGP_C3HHeJ_T0074251.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132705024 132706000 + Sfswap protein_coding processed_transcript MGP_C3HHeJ_T0074252.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132705839 132706754 + Sfswap protein_coding retained_intron MGP_C3HHeJ_T0074253.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132705961 132758640 + MGP_C3HHeJ_P0074253 Sfswap protein_coding unknown_likely_coding MGP_C3HHeJ_T0074254.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132706206 132714980 + Sfswap protein_coding retained_intron MGP_C3HHeJ_T0074255.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132745315 132754742 + MGP_C3HHeJ_P0074255 Sfswap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074256.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132752820 132775264 + Sfswap protein_coding retained_intron MGP_C3HHeJ_T0074257.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132754657 132763379 + Sfswap protein_coding processed_transcript MGP_C3HHeJ_T0074258.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132764038 132775267 + Sfswap protein_coding retained_intron MGP_C3HHeJ_T0074259.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132764379 132773897 + Sfswap protein_coding retained_intron MGP_C3HHeJ_T0074260.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132774599 132775267 + Sfswap protein_coding retained_intron MGP_C3HHeJ_T0014825.1 MGP_C3HHeJ_G0012929.1 mouse_genomes_project 5 63744504 63745194 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070640.1 MGP_C3HHeJ_G0029135.1 mouse_genomes_project 5 31043041 31168788 - MGP_C3HHeJ_P0070640 Gm20671 protein_coding protein_coding MGP_C3HHeJ_T0075632.1 MGP_C3HHeJ_G0030094.1 mouse_genomes_project 5 153636822 153744490 - MGP_C3HHeJ_P0075632 Gm42791 protein_coding protein_coding MGP_C3HHeJ_T0075635.1 MGP_C3HHeJ_G0030094.1 mouse_genomes_project 5 153730012 153730627 - Gm42791 protein_coding processed_transcript MGP_C3HHeJ_T0001599.1 MGP_C3HHeJ_G0001524.1 mouse_genomes_project 5 65048394 65049314 + TEC TEC MGP_C3HHeJ_T0004560.1 MGP_C3HHeJ_G0003946.1 mouse_genomes_project 5 11499963 11517349 - Gm4128 antisense antisense MGP_C3HHeJ_T0072527.1 MGP_C3HHeJ_G0029494.1 mouse_genomes_project 5 102983652 102990504 - MGP_C3HHeJ_P0072527 Nkx6-1 protein_coding protein_coding MGP_C3HHeJ_T0014954.1 MGP_C3HHeJ_G0013058.1 mouse_genomes_project 5 117497078 117497441 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074760.1 MGP_C3HHeJ_G0029907.1 mouse_genomes_project 5 140572305 140581943 + MGP_C3HHeJ_P0074760 Plod3 protein_coding protein_coding MGP_C3HHeJ_T0074761.1 MGP_C3HHeJ_G0029907.1 mouse_genomes_project 5 140572664 140577384 + Plod3 protein_coding retained_intron MGP_C3HHeJ_T0074762.1 MGP_C3HHeJ_G0029907.1 mouse_genomes_project 5 140572762 140578001 + Plod3 protein_coding retained_intron MGP_C3HHeJ_T0074763.1 MGP_C3HHeJ_G0029907.1 mouse_genomes_project 5 140575601 140579475 + Plod3 protein_coding retained_intron MGP_C3HHeJ_T0074764.1 MGP_C3HHeJ_G0029907.1 mouse_genomes_project 5 140575797 140577384 + Plod3 protein_coding retained_intron MGP_C3HHeJ_T0074765.1 MGP_C3HHeJ_G0029907.1 mouse_genomes_project 5 140576919 140580473 + MGP_C3HHeJ_P0074765 Plod3 protein_coding protein_coding MGP_C3HHeJ_T0070486.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29388914 29394576 + MGP_C3HHeJ_P0070486 Snx17 protein_coding protein_coding MGP_C3HHeJ_T0070487.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29388929 29391122 + MGP_C3HHeJ_P0070487 Snx17 protein_coding protein_coding MGP_C3HHeJ_T0070488.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29388981 29394570 + MGP_C3HHeJ_P0070488 Snx17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070489.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29388993 29394575 + Snx17 protein_coding retained_intron MGP_C3HHeJ_T0070490.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29388993 29392732 + MGP_C3HHeJ_P0070490 Snx17 protein_coding protein_coding MGP_C3HHeJ_T0070491.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29389022 29394576 + MGP_C3HHeJ_P0070491 Snx17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070492.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29389541 29394819 + Snx17 protein_coding retained_intron MGP_C3HHeJ_T0070493.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29390530 29392110 + Snx17 protein_coding retained_intron MGP_C3HHeJ_T0070494.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29391060 29392926 + Snx17 protein_coding retained_intron MGP_C3HHeJ_T0070495.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29391518 29393386 + Snx17 protein_coding retained_intron MGP_C3HHeJ_T0070496.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29391726 29393820 + Snx17 protein_coding processed_transcript MGP_C3HHeJ_T0102046.1 MGP_C3HHeJ_G0040011.1 mouse_genomes_project 5 95749738 95750362 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001490.1 MGP_C3HHeJ_G0001417.1 mouse_genomes_project 5 42163739 42165845 + TEC TEC MGP_C3HHeJ_T0074367.1 MGP_C3HHeJ_G0029842.1 mouse_genomes_project 5 134096099 134098061 - MGP_C3HHeJ_P0074367 unknown_likely_coding unknown_likely_coding MGP_C3HHeJ_T0001800.1 MGP_C3HHeJ_G0001723.1 mouse_genomes_project 5 131668922 131670322 + TEC TEC MGP_C3HHeJ_T0001835.1 MGP_C3HHeJ_G0001758.1 mouse_genomes_project 5 136063239 136063527 + TEC TEC MGP_C3HHeJ_T0014949.1 MGP_C3HHeJ_G0013053.1 mouse_genomes_project 5 116439527 116440573 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071659.1 MGP_C3HHeJ_G0029304.1 mouse_genomes_project 5 69300906 69318589 - MGP_C3HHeJ_P0071659 Gnpda2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071660.1 MGP_C3HHeJ_G0029304.1 mouse_genomes_project 5 69302799 69320145 - MGP_C3HHeJ_P0071660 Gnpda2 protein_coding protein_coding MGP_C3HHeJ_T0071661.1 MGP_C3HHeJ_G0029304.1 mouse_genomes_project 5 69302968 69318625 - MGP_C3HHeJ_P0071661 Gnpda2 protein_coding protein_coding MGP_C3HHeJ_T0071662.1 MGP_C3HHeJ_G0029304.1 mouse_genomes_project 5 69302973 69320051 - Gnpda2 protein_coding retained_intron MGP_C3HHeJ_T0071663.1 MGP_C3HHeJ_G0029304.1 mouse_genomes_project 5 69303610 69320079 - MGP_C3HHeJ_P0071663 Gnpda2 protein_coding protein_coding MGP_C3HHeJ_T0071664.1 MGP_C3HHeJ_G0029304.1 mouse_genomes_project 5 69304540 69320098 - MGP_C3HHeJ_P0071664 Gnpda2 protein_coding protein_coding MGP_C3HHeJ_T0071665.1 MGP_C3HHeJ_G0029304.1 mouse_genomes_project 5 69312797 69320094 - MGP_C3HHeJ_P0071665 Gnpda2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001501.1 MGP_C3HHeJ_G0001428.1 mouse_genomes_project 5 43145781 43146684 - TEC TEC MGP_C3HHeJ_T0072570.1 MGP_C3HHeJ_G0029502.1 mouse_genomes_project 5 105054482 105188431 + Aff1 protein_coding retained_intron MGP_C3HHeJ_T0072571.1 MGP_C3HHeJ_G0029502.1 mouse_genomes_project 5 105122993 105232192 + MGP_C3HHeJ_P0072571 Aff1 protein_coding protein_coding MGP_C3HHeJ_T0072572.1 MGP_C3HHeJ_G0029502.1 mouse_genomes_project 5 105123393 105215034 + MGP_C3HHeJ_P0072572 Aff1 protein_coding protein_coding MGP_C3HHeJ_T0072573.1 MGP_C3HHeJ_G0029502.1 mouse_genomes_project 5 105123402 105232192 + MGP_C3HHeJ_P0072573 Aff1 protein_coding protein_coding MGP_C3HHeJ_T0072574.1 MGP_C3HHeJ_G0029502.1 mouse_genomes_project 5 105156463 105183596 + Aff1 protein_coding retained_intron MGP_C3HHeJ_T0073529.1 MGP_C3HHeJ_G0029696.1 mouse_genomes_project 5 123035867 123045291 + MGP_C3HHeJ_P0073529 Lhx5 protein_coding protein_coding MGP_C3HHeJ_T0007998.1 MGP_C3HHeJ_G0006519.1 mouse_genomes_project 5 28251598 28257050 + Gm4961 lincRNA lincRNA MGP_C3HHeJ_T0075108.1 MGP_C3HHeJ_G0029977.1 mouse_genomes_project 5 143267938 143280896 - MGP_C3HHeJ_P0075108 Cox19 protein_coding protein_coding MGP_C3HHeJ_T0075109.1 MGP_C3HHeJ_G0029977.1 mouse_genomes_project 5 143269573 143280840 - Cox19 protein_coding processed_transcript MGP_C3HHeJ_T0075110.1 MGP_C3HHeJ_G0029977.1 mouse_genomes_project 5 143269891 143271327 - Cox19 protein_coding processed_transcript MGP_C3HHeJ_T0075111.1 MGP_C3HHeJ_G0029977.1 mouse_genomes_project 5 143269972 143290466 - MGP_C3HHeJ_P0075111 Cox19 protein_coding protein_coding MGP_C3HHeJ_T0075112.1 MGP_C3HHeJ_G0029977.1 mouse_genomes_project 5 143270061 143280788 - MGP_C3HHeJ_P0075112 Cox19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075113.1 MGP_C3HHeJ_G0029977.1 mouse_genomes_project 5 143276207 143280823 - Cox19 protein_coding retained_intron MGP_C3HHeJ_T0075114.1 MGP_C3HHeJ_G0029977.1 mouse_genomes_project 5 143276376 143280828 - Cox19 protein_coding retained_intron MGP_C3HHeJ_T0008095.1 MGP_C3HHeJ_G0006592.1 mouse_genomes_project 5 76081080 76094552 + Gm32780 lincRNA lincRNA MGP_C3HHeJ_T0001725.1 MGP_C3HHeJ_G0001649.1 mouse_genomes_project 5 113410662 113412785 + TEC TEC MGP_C3HHeJ_T0001628.1 MGP_C3HHeJ_G0001553.1 mouse_genomes_project 5 67070503 67072914 + TEC TEC MGP_C3HHeJ_T0008393.1 MGP_C3HHeJ_G0006798.1 mouse_genomes_project 5 155433072 155433338 - Gm43690 lincRNA lincRNA MGP_C3HHeJ_T0071468.1 MGP_C3HHeJ_G0029276.1 mouse_genomes_project 5 64937955 64941034 - MGP_C3HHeJ_P0071468 protein_coding unknown_likely_coding MGP_C3HHeJ_T0071469.1 MGP_C3HHeJ_G0029276.1 mouse_genomes_project 5 64937962 64938513 - protein_coding retained_intron MGP_C3HHeJ_T0071470.1 MGP_C3HHeJ_G0029276.1 mouse_genomes_project 5 64937962 64940604 - MGP_C3HHeJ_P0071470 protein_coding protein_coding MGP_C3HHeJ_T0071471.1 MGP_C3HHeJ_G0029276.1 mouse_genomes_project 5 64937962 64940432 - MGP_C3HHeJ_P0071471 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071472.1 MGP_C3HHeJ_G0029276.1 mouse_genomes_project 5 64937962 64940998 - MGP_C3HHeJ_P0071472 protein_coding protein_coding MGP_C3HHeJ_T0071473.1 MGP_C3HHeJ_G0029276.1 mouse_genomes_project 5 64937963 64940997 - protein_coding retained_intron MGP_C3HHeJ_T0071474.1 MGP_C3HHeJ_G0029276.1 mouse_genomes_project 5 64938275 64940980 - protein_coding retained_intron MGP_C3HHeJ_T0071475.1 MGP_C3HHeJ_G0029276.1 mouse_genomes_project 5 64938515 64940590 - protein_coding retained_intron MGP_C3HHeJ_T0073051.1 MGP_C3HHeJ_G0029606.1 mouse_genomes_project 5 114504193 114506523 + MGP_C3HHeJ_P0073051 Gm6588 protein_coding protein_coding MGP_C3HHeJ_T0074264.1 MGP_C3HHeJ_G0029822.1 mouse_genomes_project 5 132893764 132903616 - Sept14 protein_coding processed_transcript MGP_C3HHeJ_T0074265.1 MGP_C3HHeJ_G0029822.1 mouse_genomes_project 5 132893775 132918517 - MGP_C3HHeJ_P0074265 Sept14 protein_coding protein_coding MGP_C3HHeJ_T0074266.1 MGP_C3HHeJ_G0029822.1 mouse_genomes_project 5 132893812 132920913 - MGP_C3HHeJ_P0074266 Sept14 protein_coding protein_coding MGP_C3HHeJ_T0004819.1 MGP_C3HHeJ_G0004134.1 mouse_genomes_project 5 153693726 153696659 - Gm15410 antisense antisense MGP_C3HHeJ_T0069977.1 MGP_C3HHeJ_G0029020.1 mouse_genomes_project 5 19518753 19538115 + MGP_C3HHeJ_P0069977 Psmc2 protein_coding protein_coding MGP_C3HHeJ_T0069978.1 MGP_C3HHeJ_G0029020.1 mouse_genomes_project 5 19527837 19531500 + Psmc2 protein_coding retained_intron MGP_C3HHeJ_T0073675.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124558835 124600067 + Atxn2 protein_coding processed_transcript MGP_C3HHeJ_T0073676.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124559028 124673741 + MGP_C3HHeJ_P0073676 Atxn2 protein_coding protein_coding MGP_C3HHeJ_T0073677.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124560352 124627748 + Atxn2 protein_coding processed_transcript MGP_C3HHeJ_T0073678.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124600079 124673740 + MGP_C3HHeJ_P0073678 Atxn2 protein_coding protein_coding MGP_C3HHeJ_T0073679.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124632889 124652812 + MGP_C3HHeJ_P0073679 Atxn2 protein_coding protein_coding MGP_C3HHeJ_T0073680.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124635797 124640342 + Atxn2 protein_coding retained_intron MGP_C3HHeJ_T0073681.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124640926 124673511 + MGP_C3HHeJ_P0073681 Atxn2 protein_coding protein_coding MGP_C3HHeJ_T0073682.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124642093 124653223 + Atxn2 protein_coding retained_intron MGP_C3HHeJ_T0073683.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124655159 124662226 + Atxn2 protein_coding retained_intron MGP_C3HHeJ_T0073684.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124660099 124661056 + Atxn2 protein_coding processed_transcript MGP_C3HHeJ_T0073685.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124660536 124669742 + Atxn2 protein_coding retained_intron MGP_C3HHeJ_T0073686.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124660901 124667847 + Atxn2 protein_coding retained_intron MGP_C3HHeJ_T0073687.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124661020 124673422 + MGP_C3HHeJ_P0073687 Atxn2 protein_coding protein_coding MGP_C3HHeJ_T0073688.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124664369 124673525 + Atxn2 protein_coding retained_intron MGP_C3HHeJ_T0073689.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124665035 124672246 + MGP_C3HHeJ_P0073689 Atxn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073690.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124669454 124670324 + Atxn2 protein_coding retained_intron MGP_C3HHeJ_T0073691.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124669755 124670721 + Atxn2 protein_coding retained_intron MGP_C3HHeJ_T0073692.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124670250 124675284 + MGP_C3HHeJ_P0073692 Atxn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073693.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124670297 124673689 + MGP_C3HHeJ_P0073693 Atxn2 protein_coding protein_coding MGP_C3HHeJ_T0102043.1 MGP_C3HHeJ_G0040008.1 mouse_genomes_project 5 87964794 87966454 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015035.1 MGP_C3HHeJ_G0013139.1 mouse_genomes_project 5 154822068 154823614 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074742.1 MGP_C3HHeJ_G0029903.1 mouse_genomes_project 5 140484950 140490705 + MGP_C3HHeJ_P0074742 Ift22 protein_coding protein_coding MGP_C3HHeJ_T0074743.1 MGP_C3HHeJ_G0029903.1 mouse_genomes_project 5 140484954 140489855 + MGP_C3HHeJ_P0074743 Ift22 protein_coding protein_coding MGP_C3HHeJ_T0074744.1 MGP_C3HHeJ_G0029903.1 mouse_genomes_project 5 140484984 140490706 + MGP_C3HHeJ_P0074744 Ift22 protein_coding protein_coding MGP_C3HHeJ_T0074745.1 MGP_C3HHeJ_G0029903.1 mouse_genomes_project 5 140488616 140489190 + Ift22 protein_coding retained_intron MGP_C3HHeJ_T0073972.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126736538 126750849 - MGP_C3HHeJ_P0073972 Rsrc2 protein_coding protein_coding MGP_C3HHeJ_T0073973.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126736844 126750896 - Rsrc2 protein_coding processed_transcript MGP_C3HHeJ_T0073974.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126737127 126757515 - MGP_C3HHeJ_P0073974 Rsrc2 protein_coding protein_coding MGP_C3HHeJ_T0073975.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126737138 126757481 - MGP_C3HHeJ_P0073975 Rsrc2 protein_coding protein_coding MGP_C3HHeJ_T0073976.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126737204 126750921 - MGP_C3HHeJ_P0073976 Rsrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073977.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126737204 126751708 - MGP_C3HHeJ_P0073977 Rsrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073978.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126737204 126751708 - MGP_C3HHeJ_P0073978 Rsrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073979.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126737367 126741812 - Rsrc2 protein_coding retained_intron MGP_C3HHeJ_T0073980.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126738649 126757487 - MGP_C3HHeJ_P0073980 Rsrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073981.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126741486 126757513 - MGP_C3HHeJ_P0073981 Rsrc2 protein_coding protein_coding MGP_C3HHeJ_T0073982.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126741720 126757482 - MGP_C3HHeJ_P0073982 Rsrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073983.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126741720 126757483 - MGP_C3HHeJ_P0073983 Rsrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073984.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126742951 126753632 - Rsrc2 protein_coding retained_intron MGP_C3HHeJ_T0073985.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126743006 126749844 - Rsrc2 protein_coding retained_intron MGP_C3HHeJ_T0073986.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126744732 126757472 - MGP_C3HHeJ_P0073986 Rsrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073987.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126744779 126757513 - MGP_C3HHeJ_P0073987 Rsrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073988.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126747786 126757470 - MGP_C3HHeJ_P0073988 Rsrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073989.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126748918 126757468 - Rsrc2 protein_coding processed_transcript MGP_C3HHeJ_T0073990.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126750056 126757482 - Rsrc2 protein_coding retained_intron MGP_C3HHeJ_T0073991.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126750056 126757482 - Rsrc2 protein_coding retained_intron MGP_C3HHeJ_T0073992.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126751631 126753293 - Rsrc2 protein_coding retained_intron MGP_C3HHeJ_T0073771.1 MGP_C3HHeJ_G0029742.1 mouse_genomes_project 5 125281191 125293586 - MGP_C3HHeJ_P0073771 Fam216a protein_coding protein_coding MGP_C3HHeJ_T0001721.1 MGP_C3HHeJ_G0001645.1 mouse_genomes_project 5 113025586 113026320 + TEC TEC MGP_C3HHeJ_T0008024.1 MGP_C3HHeJ_G0006533.1 mouse_genomes_project 5 36489247 36491627 + Gm42505 lincRNA lincRNA MGP_C3HHeJ_T0072657.1 MGP_C3HHeJ_G0029527.1 mouse_genomes_project 5 108098518 108104137 - MGP_C3HHeJ_P0072657 Barhl2 protein_coding protein_coding MGP_C3HHeJ_T0001685.1 MGP_C3HHeJ_G0001609.1 mouse_genomes_project 5 97928092 97930238 + TEC TEC MGP_C3HHeJ_T0017946.1 MGP_C3HHeJ_G0015368.1 mouse_genomes_project 5 108208475 108347166 - Gm28039 processed_transcript processed_transcript MGP_C3HHeJ_T0014756.1 MGP_C3HHeJ_G0012860.1 mouse_genomes_project 5 31177739 31178025 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074230.1 MGP_C3HHeJ_G0029816.1 mouse_genomes_project 5 132160271 132184281 - MGP_C3HHeJ_P0074230 Stx2 protein_coding protein_coding MGP_C3HHeJ_T0074231.1 MGP_C3HHeJ_G0029816.1 mouse_genomes_project 5 132160277 132184242 - MGP_C3HHeJ_P0074231 Stx2 protein_coding protein_coding MGP_C3HHeJ_T0074232.1 MGP_C3HHeJ_G0029816.1 mouse_genomes_project 5 132161869 132164873 - Stx2 protein_coding retained_intron MGP_C3HHeJ_T0074233.1 MGP_C3HHeJ_G0029816.1 mouse_genomes_project 5 132164379 132165564 - Stx2 protein_coding retained_intron MGP_C3HHeJ_T0074234.1 MGP_C3HHeJ_G0029816.1 mouse_genomes_project 5 132164622 132184130 - Stx2 protein_coding processed_transcript MGP_C3HHeJ_T0074235.1 MGP_C3HHeJ_G0029816.1 mouse_genomes_project 5 132166355 132184256 - Stx2 protein_coding retained_intron MGP_C3HHeJ_T0074236.1 MGP_C3HHeJ_G0029816.1 mouse_genomes_project 5 132169209 132184151 - MGP_C3HHeJ_P0074236 Stx2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074237.1 MGP_C3HHeJ_G0029816.1 mouse_genomes_project 5 132169223 132175342 - MGP_C3HHeJ_P0074237 Stx2 protein_coding protein_coding MGP_C3HHeJ_T0074238.1 MGP_C3HHeJ_G0029816.1 mouse_genomes_project 5 132174794 132184253 - Stx2 protein_coding retained_intron MGP_C3HHeJ_T0010576.1 MGP_C3HHeJ_G0008709.1 mouse_genomes_project 5 561444 561512 + Gm22926 miRNA miRNA MGP_C3HHeJ_T0072001.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84498553 84879067 - MGP_C3HHeJ_P0072001 Epha5 protein_coding protein_coding MGP_C3HHeJ_T0072002.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84501583 84878952 - MGP_C3HHeJ_P0072002 Epha5 protein_coding protein_coding MGP_C3HHeJ_T0072003.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84501583 84878952 - MGP_C3HHeJ_P0072003 Epha5 protein_coding protein_coding MGP_C3HHeJ_T0072004.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84509260 84878952 - MGP_C3HHeJ_P0072004 Epha5 protein_coding protein_coding MGP_C3HHeJ_T0072005.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84509260 84878952 - MGP_C3HHeJ_P0072005 Epha5 protein_coding protein_coding MGP_C3HHeJ_T0072006.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84509260 84879505 - MGP_C3HHeJ_P0072006 Epha5 protein_coding protein_coding MGP_C3HHeJ_T0072007.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84559363 84879067 - Epha5 protein_coding retained_intron MGP_C3HHeJ_T0072008.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84610289 84879067 - Epha5 protein_coding retained_intron MGP_C3HHeJ_T0072009.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84697555 84879528 - Epha5 protein_coding retained_intron MGP_C3HHeJ_T0072010.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84793549 84879528 - Epha5 protein_coding retained_intron MGP_C3HHeJ_T0072011.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84820349 84824028 - Epha5 protein_coding retained_intron MGP_C3HHeJ_T0069896.1 MGP_C3HHeJ_G0029003.1 mouse_genomes_project 5 15529509 15588440 + MGP_C3HHeJ_P0069896 Gnat3 protein_coding protein_coding MGP_C3HHeJ_T0072178.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90953407 91094544 - MGP_C3HHeJ_P0072178 Ankrd17 protein_coding protein_coding MGP_C3HHeJ_T0072179.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90954060 90958705 - Ankrd17 protein_coding retained_intron MGP_C3HHeJ_T0072180.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90954706 91094190 - MGP_C3HHeJ_P0072180 Ankrd17 protein_coding protein_coding MGP_C3HHeJ_T0072181.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90954982 91066641 - MGP_C3HHeJ_P0072181 Ankrd17 protein_coding protein_coding MGP_C3HHeJ_T0072182.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90955523 91094009 - MGP_C3HHeJ_P0072182 Ankrd17 protein_coding protein_coding MGP_C3HHeJ_T0072183.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90962662 90965937 - Ankrd17 protein_coding retained_intron MGP_C3HHeJ_T0072184.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90980485 91030861 - Ankrd17 protein_coding retained_intron MGP_C3HHeJ_T0072185.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90981129 90990230 - Ankrd17 protein_coding retained_intron MGP_C3HHeJ_T0072186.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90986913 90993441 - Ankrd17 protein_coding retained_intron MGP_C3HHeJ_T0072187.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90993975 91002261 - Ankrd17 protein_coding retained_intron MGP_C3HHeJ_T0072188.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 91003110 91005287 - Ankrd17 protein_coding retained_intron MGP_C3HHeJ_T0072189.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 91019013 91021855 - Ankrd17 protein_coding retained_intron MGP_C3HHeJ_T0072190.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 91092055 91094147 - Ankrd17 protein_coding retained_intron MGP_C3HHeJ_T0004567.1 MGP_C3HHeJ_G0003951.1 mouse_genomes_project 5 18623472 18628884 + A630072M18Rik antisense antisense MGP_C3HHeJ_T0008136.1 MGP_C3HHeJ_G0006626.1 mouse_genomes_project 5 100470258 100475455 + Gm43252 lincRNA lincRNA MGP_C3HHeJ_T0008176.1 MGP_C3HHeJ_G0006654.1 mouse_genomes_project 5 108720154 108727290 + Gm43419 lincRNA lincRNA MGP_C3HHeJ_T0008399.1 MGP_C3HHeJ_G0006802.1 mouse_genomes_project 5 155739110 155759594 - Gm43298 lincRNA lincRNA MGP_C3HHeJ_T0008277.1 MGP_C3HHeJ_G0006716.1 mouse_genomes_project 5 126107029 126116267 + lincRNA lincRNA MGP_C3HHeJ_T0073630.1 MGP_C3HHeJ_G0029722.1 mouse_genomes_project 5 124233322 124312300 + MGP_C3HHeJ_P0073630 Tmem116 protein_coding protein_coding MGP_C3HHeJ_T0073631.1 MGP_C3HHeJ_G0029722.1 mouse_genomes_project 5 124234004 124281549 + MGP_C3HHeJ_P0073631 Tmem116 protein_coding protein_coding MGP_C3HHeJ_T0073632.1 MGP_C3HHeJ_G0029722.1 mouse_genomes_project 5 124234004 124280587 + MGP_C3HHeJ_P0073632 Tmem116 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073633.1 MGP_C3HHeJ_G0029722.1 mouse_genomes_project 5 124234054 124268223 + MGP_C3HHeJ_P0073633 Tmem116 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073634.1 MGP_C3HHeJ_G0029722.1 mouse_genomes_project 5 124234135 124268223 + Tmem116 protein_coding processed_transcript MGP_C3HHeJ_T0073635.1 MGP_C3HHeJ_G0029722.1 mouse_genomes_project 5 124239597 124280419 + MGP_C3HHeJ_P0073635 Tmem116 protein_coding protein_coding MGP_C3HHeJ_T0073636.1 MGP_C3HHeJ_G0029722.1 mouse_genomes_project 5 124244437 124281556 + MGP_C3HHeJ_P0073636 Tmem116 protein_coding protein_coding MGP_C3HHeJ_T0073637.1 MGP_C3HHeJ_G0029722.1 mouse_genomes_project 5 124244437 124281529 + MGP_C3HHeJ_P0073637 Tmem116 protein_coding protein_coding MGP_C3HHeJ_T0073178.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116492313 116571865 + MGP_C3HHeJ_P0073178 Myo1h protein_coding protein_coding MGP_C3HHeJ_T0073179.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116521679 116571644 + MGP_C3HHeJ_P0073179 Myo1h protein_coding protein_coding MGP_C3HHeJ_T0073180.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116521679 116573206 + MGP_C3HHeJ_P0073180 Myo1h protein_coding protein_coding MGP_C3HHeJ_T0073181.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116565441 116573206 + Myo1h protein_coding retained_intron MGP_C3HHeJ_T0073182.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116565489 116571950 + Myo1h protein_coding retained_intron MGP_C3HHeJ_T0073183.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116565489 116571950 + MGP_C3HHeJ_P0073183 Myo1h protein_coding protein_coding MGP_C3HHeJ_T0073184.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116565489 116571950 + MGP_C3HHeJ_P0073184 Myo1h protein_coding protein_coding MGP_C3HHeJ_T0073185.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116565489 116571950 + MGP_C3HHeJ_P0073185 Myo1h protein_coding protein_coding MGP_C3HHeJ_T0073186.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116566032 116568362 + Myo1h protein_coding retained_intron MGP_C3HHeJ_T0073187.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116572044 116573987 + Myo1h protein_coding processed_transcript MGP_C3HHeJ_T0014848.1 MGP_C3HHeJ_G0012952.1 mouse_genomes_project 5 76099129 76099411 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099442.1 MGP_C3HHeJ_G0037636.1 mouse_genomes_project 5 69106092 69106199 - Gm23932 snRNA snRNA MGP_C3HHeJ_T0075757.1 MGP_C3HHeJ_G0030114.1 mouse_genomes_project 5 156537363 156545850 - MGP_C3HHeJ_P0075757 Rfc3 protein_coding protein_coding MGP_C3HHeJ_T0075758.1 MGP_C3HHeJ_G0030114.1 mouse_genomes_project 5 156537426 156538739 - Rfc3 protein_coding retained_intron MGP_C3HHeJ_T0075759.1 MGP_C3HHeJ_G0030114.1 mouse_genomes_project 5 156537428 156539370 - Rfc3 protein_coding retained_intron MGP_C3HHeJ_T0075760.1 MGP_C3HHeJ_G0030114.1 mouse_genomes_project 5 156537431 156545810 - Rfc3 protein_coding retained_intro