RepeatModeler Version 2.0.4
===========================
Using output directory = /dev/shm/rModeler.CQrL5K/RM_20868.MonAug122317282024
Search Engine = rmblast 2.13.0+
Threads = 32
Dependencies: TRF 4.09, RECON , RepeatScout 1.0.6, RepeatMasker 4.1.4
LTR Structural Analysis: Disabled [use -LTRStruct to enable]
Random Number Seed: 1723529847
Database = /dev/shm/rModeler.CQrL5K/GCA_002081675.1_ASM208167v1   - Sequences = 62
  - Bases = 3253521
Storage Throughput = excellent ( 1051.60 MB/s )


RepeatModeler Round # 1
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 40000000 bp
   - Final Sample Size = 3253414 bp ( 3252838 non ambiguous )
   - Num Contigs Represented = 62
   - Sequence extraction : 00:00:00 (hh:mm:ss) Elapsed Time
 -- Running RepeatScout on the sequences...
   - RepeatScout: 00:02:10 (hh:mm:ss) Elapsed Time
Round Time: 00:04:11 (hh:mm:ss) Elapsed Time : 11 families discovered.


RepeatModeler Round # 2
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 10000000 bp
   - Sequence extraction : 00:00:01 (hh:mm:ss) Elapsed Time
 -- Running TRFMask on the sequence...
   - TRFMask time 00:00:32 (hh:mm:ss) Elapsed Time
 -- Masking repeats from the previous rounds...
       279 repeats masked totaling 119909 bp(s).
   - TE Masking time 00:00:04 (hh:mm:ss) Elapsed Time
 -- Sample Stats:
       Sample Size 3253414 bp
       Num Contigs Represented = 62
       Non ambiguous bp:
             Initial: 3252838 bp
             After Masking: 3014960 bp
             Masked: 7.31 % 
 -- Input Database Coverage: 3253414 bp out of 3253521 bp ( 100.00 % )
Sampling Time: 00:00:37 (hh:mm:ss) Elapsed Time
Running all-by-other comparisons...
  - Total Comparisons = 7626
Comparison Time: 00:05:00 (hh:mm:ss) Elapsed Time, 1354 HSPs Collected
Number of families returned by RECON: 210
Round Time: 00:05:39 (hh:mm:ss) Elapsed Time : 0 families discovered.

RepeatScout/RECON discovery complete: 11 families found


Classification Time: 00:00:54 (hh:mm:ss) Elapsed Time


Program Time: 00:10:44 (hh:mm:ss) Elapsed Time