hub GCA_002215935.1 genome assembly shortLabel fat sand rat (Psa_ob012049795 2017) longLabel fat sand rat (Psa_ob012049795 2017)/Psammomys obesus/GCA_002215935.1_ASM221593v1 genome assembly useOneFile on email hclawson@ucsc.edu descriptionUrl html/GCA_002215935.1_ASM221593v1.description.html genome GCA_002215935.1 taxId 48139 groups groups.txt description fat sand rat (Psa_ob012049795 2017) twoBitPath GCA_002215935.1.2bit twoBitBptUrl GCA_002215935.1.2bit.bpt chromSizes GCA_002215935.1.chrom.sizes.txt chromAliasBb GCA_002215935.1.chromAlias.bb organism ASM221593v1 Jul. 2017 defaultPos NESX01033892.1:226062-236062 scientificName Psammomys obesus htmlPath html/GCA_002215935.1_ASM221593v1.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCA/002/215/935/GCA_002215935.1 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCA/002/215/935/GCA_002215935.1 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCA/002/215/935/GCA_002215935.1 track assembly longLabel Assembly shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCA_002215935.1_ASM221593v1.assembly.bb type bigBed 6 html html/GCA_002215935.1_ASM221593v1.assembly searchIndex name url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database group map track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCA_002215935.1_ASM221593v1.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCA_002215935.1_ASM221593v1.gc5Base.bw html html/GCA_002215935.1_ASM221593v1.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCA_002215935.1_ASM221593v1.tanDups track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCA_002215935.1_ASM221593v1.tandemDups.bb type bigBed 12 track repeatMasker compositeTrack on shortLabel RepeatMasker longLabel Repeating Elements by RepeatMasker group varRep visibility dense type bigBed 6 + colorByStrand 50,50,150 150,50,50 maxWindowToDraw 10000000 spectrum on html html/GCA_002215935.1_ASM221593v1.repeatMasker track repeatMaskerSINE parent repeatMasker shortLabel SINE longLabel SINE Repeating Elements by RepeatMasker type bigBed 6 + priority 1 bigDataUrl bbi/GCA_002215935.1_ASM221593v1.rmsk.SINE.bb track repeatMaskerLINE parent repeatMasker shortLabel LINE longLabel LINE Repeating Elements by RepeatMasker type bigBed 6 + priority 2 bigDataUrl bbi/GCA_002215935.1_ASM221593v1.rmsk.LINE.bb track repeatMaskerLTR parent repeatMasker shortLabel LTR longLabel LTR Repeating 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longLabel RNA Repeating Elements by RepeatMasker type bigBed 6 + priority 8 bigDataUrl bbi/GCA_002215935.1_ASM221593v1.rmsk.RNA.bb track repeatMaskerOther parent repeatMasker shortLabel Other longLabel Other Repeating Elements by RepeatMasker type bigBed 6 + priority 9 bigDataUrl bbi/GCA_002215935.1_ASM221593v1.rmsk.Other.bb track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCA_002215935.1_ASM221593v1.simpleRepeat.bb html html/GCA_002215935.1_ASM221593v1.simpleRepeat track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility pack type bigBed 4 + html html/GCA_002215935.1_ASM221593v1.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCA_002215935.1_ASM221593v1.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCA_002215935.1_ASM221593v1.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCA_002215935.1_ASM221593v1.windowMasker.bb html html/GCA_002215935.1_ASM221593v1.windowMasker track augustus shortLabel Augustus longLabel Augustus Gene Predictions group genes visibility pack color 180,0,0 type bigGenePred bigDataUrl bbi/GCA_002215935.1_ASM221593v1.augustus.bb html html/GCA_002215935.1_ASM221593v1.augustus track xenoRefGene shortLabel RefSeq mRNAs longLabel RefSeq mRNAs mapped to this assembly group rna visibility pack color 180,0,0 type bigGenePred bigDataUrl bbi/GCA_002215935.1_ASM221593v1.xenoRefGene.bb labelFields name,geneName,geneName2 defaultLabelFields geneName 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