RepeatModeler Version 2.0.4
===========================
Using output directory = /dev/shm/rModeler.zPbTOG/RM_4146044.ThuSep121037242024
Search Engine = rmblast 2.13.0+
Threads = 32
Dependencies: TRF 4.09, RECON , RepeatScout 1.0.6, RepeatMasker 4.1.4
LTR Structural Analysis: Disabled [use -LTRStruct to enable]
Random Number Seed: 1726162643
Database = /dev/shm/rModeler.zPbTOG/GCA_003072545.4_EMAI_ToriFCr_1   - Sequences = 6
  - Bases = 9360320
Storage Throughput = fair ( 690.34 MB/s )


RepeatModeler Round # 1
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 40000000 bp
   - Final Sample Size = 9360169 bp ( 9360169 non ambiguous )
   - Num Contigs Represented = 6
   - Sequence extraction : 00:00:02 (hh:mm:ss) Elapsed Time
 -- Running RepeatScout on the sequences...
   - RepeatScout: 00:03:44 (hh:mm:ss) Elapsed Time
Round Time: 00:06:19 (hh:mm:ss) Elapsed Time : 38 families discovered.


RepeatModeler Round # 2
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 10000000 bp
   - Sequence extraction : 00:00:02 (hh:mm:ss) Elapsed Time
 -- Running TRFMask on the sequence...
   - TRFMask time 00:00:22 (hh:mm:ss) Elapsed Time
 -- Masking repeats from the previous rounds...
       1142 repeats masked totaling 583324 bp(s).
   - TE Masking time 00:00:05 (hh:mm:ss) Elapsed Time
 -- Sample Stats:
       Sample Size 9360169 bp
       Num Contigs Represented = 6
       Non ambiguous bp:
             Initial: 9360169 bp
             After Masking: 8737498 bp
             Masked: 6.65 % 
 -- Input Database Coverage: 9360169 bp out of 9360320 bp ( 100.00 % )
Sampling Time: 00:00:30 (hh:mm:ss) Elapsed Time
Running all-by-other comparisons...
  - Total Comparisons = 27966
Comparison Time: 00:05:03 (hh:mm:ss) Elapsed Time, 2816 HSPs Collected
Number of families returned by RECON: 568
Round Time: 00:05:47 (hh:mm:ss) Elapsed Time : 3 families discovered.

RepeatScout/RECON discovery complete: 41 families found


Classification Time: 00:02:45 (hh:mm:ss) Elapsed Time


Program Time: 00:14:51 (hh:mm:ss) Elapsed Time