RepeatModeler Version 2.0.4
===========================
Using output directory = /dev/shm/rModeler.WVmv9S/RM_28102.TueAug130100352024
Search Engine = rmblast 2.13.0+
Threads = 32
Dependencies: TRF 4.09, RECON , RepeatScout 1.0.6, RepeatMasker 4.1.4
LTR Structural Analysis: Disabled [use -LTRStruct to enable]
Random Number Seed: 1723536033
Database = /dev/shm/rModeler.WVmv9S/GCA_003709115.1_ASM370911v1   - Sequences = 162
  - Bases = 2825971
  - N50 = 69596
  - Contig Histogram:
  Size(bp)                                                        Count
  -----------------------------------------------------------------------
  145351-155661 |                                                   [ 2 ]
  135041-145350 |                                                   [  ]
  124731-135040 |                                                   [ 1 ]
  114421-124730 |*                                                  [ 3 ]
  104112-114421 |                                                   [ 2 ]
  93802-104111  |                                                   [  ]
  83492-93801   |                                                   [ 2 ]
  73182-83491   |                                                   [ 2 ]
  62872-73181   |*                                                  [ 4 ]
  52563-62872   |*                                                  [ 4 ]
  42253-52562   |                                                   [ 2 ]
  31943-42252   |**                                                 [ 6 ]
  21633-31942   |**                                                 [ 6 ]
  11323-21632   |*****                                              [ 13 ]
  1014-11323    |************************************************** [ 115 ]

Storage Throughput = good ( 948.77 MB/s )


RepeatModeler Round # 1
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 40000000 bp
   - Final Sample Size = 2825892 bp ( 2825892 non ambiguous )
   - Num Contigs Represented = 162
   - Sequence extraction : 00:00:01 (hh:mm:ss) Elapsed Time
 -- Running RepeatScout on the sequences...
   - RepeatScout: 00:02:25 (hh:mm:ss) Elapsed Time
Round Time: 00:02:41 (hh:mm:ss) Elapsed Time : 9 families discovered.


RepeatModeler Round # 2
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 10000000 bp
   - Sequence extraction : 00:00:01 (hh:mm:ss) Elapsed Time
 -- Running TRFMask on the sequence...
   - TRFMask time 00:00:39 (hh:mm:ss) Elapsed Time
 -- Masking repeats from the previous rounds...
       253 repeats masked totaling 46827 bp(s).
   - TE Masking time 00:00:01 (hh:mm:ss) Elapsed Time
 -- Sample Stats:
       Sample Size 2825892 bp
       Num Contigs Represented = 162
       Non ambiguous bp:
             Initial: 2825892 bp
             After Masking: 2633024 bp
             Masked: 6.83 % 
 -- Input Database Coverage: 2825892 bp out of 2825971 bp ( 100.00 % )
Sampling Time: 00:00:42 (hh:mm:ss) Elapsed Time
Running all-by-other comparisons...
  - Total Comparisons = 19701
Comparison Time: 00:03:56 (hh:mm:ss) Elapsed Time, 2312 HSPs Collected
Number of families returned by RECON: 242
Round Time: 00:05:06 (hh:mm:ss) Elapsed Time : 2 families discovered.

RepeatScout/RECON discovery complete: 11 families found


Classification Time: 00:00:23 (hh:mm:ss) Elapsed Time


Program Time: 00:08:10 (hh:mm:ss) Elapsed Time