# Assembly name: bCalAnn1_v1.p # Organism name: Calypte anna (Anna's hummingbird) # Isolate: BGI_N300 # Sex: female # Taxid: 9244 # BioSample: SAMN02265252 # BioProject: PRJNA489139 # Submitter: Vertebrate Genomes Project # Date: 2019-05-16 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: RRCD01 # Assembly method: FALCON v. 5.1.1; FALCON unzip v. 1.0.2; scaff10X v. git 4.28.2018; Bionano Solve v. DLS 3.2.1; Salsa2 HiC v. 2.0; smrtanalysis Arrow polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; purge_haplotigs v. bit 7.10.2018; gEVAL manual curation v. 2018-09-07 # Expected final version: no # Genome coverage: 54.0x # Sequencing technology: PacBio RSII; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics HiC # RefSeq category: Representative Genome # GenBank assembly accession: GCA_003957555.2 # RefSeq assembly accession: GCF_003957555.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_003957575.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_003957585.1 GCF_003957585.1 Primary Assembly ## GCA_005459145.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Superscaffold_1 assembled-molecule 1 Chromosome CM012114.1 = NC_044244.1 Primary Assembly 197551010 na Superscaffold_2 assembled-molecule 2 Chromosome CM012115.1 = NC_044245.1 Primary Assembly 151342139 na Superscaffold_3 assembled-molecule 3 Chromosome CM012116.1 = NC_044246.1 Primary Assembly 114810999 na Superscaffold_4 assembled-molecule 4 Chromosome CM012117.1 = NC_044247.1 Primary Assembly 18597117 na Superscaffold_4A assembled-molecule 4A Chromosome CM012143.1 = NC_044248.1 Primary Assembly 44745344 na Superscaffold_4B assembled-molecule 4B Chromosome CM012144.1 = NC_044249.1 Primary Assembly 23291945 na Superscaffold_5 assembled-molecule 5 Chromosome CM012118.1 = NC_044250.1 Primary Assembly 16645885 na Superscaffold_5A assembled-molecule 5A Chromosome CM012145.1 = NC_044251.1 Primary Assembly 43880846 na Superscaffold_6 assembled-molecule 6 Chromosome CM012119.1 = NC_044252.1 Primary Assembly 35401958 na Superscaffold_7 assembled-molecule 7 Chromosome CM012120.1 = NC_044253.1 Primary Assembly 39139214 na Superscaffold_8 assembled-molecule 8 Chromosome CM012121.1 = NC_044254.1 Primary Assembly 31090148 na Superscaffold_9 assembled-molecule 9 Chromosome CM012122.1 = NC_044255.1 Primary Assembly 25686456 na Superscaffold_10 assembled-molecule 10 Chromosome CM012123.1 = NC_044256.1 Primary Assembly 22664390 na Superscaffold_11 assembled-molecule 11 Chromosome CM012124.1 = NC_044257.1 Primary Assembly 20302349 na Superscaffold_12 assembled-molecule 12 Chromosome CM012125.1 = NC_044258.1 Primary Assembly 21352500 na Superscaffold_13 assembled-molecule 13 Chromosome CM012126.1 = NC_044259.1 Primary Assembly 17696115 na Superscaffold_14 assembled-molecule 14 Chromosome CM012127.1 = NC_044260.1 Primary Assembly 15497061 na Superscaffold_15 assembled-molecule 15 Chromosome CM012128.1 = NC_044261.1 Primary Assembly 13887164 na Superscaffold_17 assembled-molecule 17 Chromosome CM012129.1 = NC_044262.1 Primary Assembly 10473655 na Superscaffold_18 assembled-molecule 18 Chromosome CM012130.1 = NC_044263.1 Primary Assembly 11617720 na Superscaffold_19 assembled-molecule 19 Chromosome CM012131.1 = NC_044264.1 Primary Assembly 11166003 na Superscaffold_20 assembled-molecule 20 Chromosome CM012132.1 = NC_044265.1 Primary Assembly 15116875 na Superscaffold_21 assembled-molecule 21 Chromosome CM012133.1 = NC_044266.1 Primary Assembly 7710055 na Superscaffold_22 assembled-molecule 22 Chromosome CM012134.1 = NC_044267.1 Primary Assembly 5198135 na Superscaffold_23 assembled-molecule 23 Chromosome CM012135.1 = NC_044268.1 Primary Assembly 6423903 na Superscaffold_24 assembled-molecule 24 Chromosome CM012136.1 = NC_044269.1 Primary Assembly 6461084 na Superscaffold_25 assembled-molecule 25 Chromosome CM012137.1 = NC_044270.1 Primary Assembly 2161911 na Superscaffold_26 assembled-molecule 26 Chromosome CM012138.1 = NC_044271.1 Primary Assembly 6306732 na Superscaffold_27 assembled-molecule 27 Chromosome CM012139.1 = NC_044272.1 Primary Assembly 5749075 na Superscaffold_28 assembled-molecule 28 Chromosome CM012140.1 = NC_044273.1 Primary Assembly 5713987 na Superscaffold_Z assembled-molecule Z Chromosome CM012142.1 = NC_044274.1 Primary Assembly 74081004 na scaffold_176_arrow_ctg1 assembled-molecule W Chromosome CM012146.1 = NC_044276.1 Primary Assembly 26448777 na Superscaffold_33 assembled-molecule 33 Chromosome CM012141.1 = NC_044275.1 Primary Assembly 1888140 na scaffold_100_arrow_ctg1 unplaced-scaffold na na RRCD01000034.1 = NW_022045418.1 Primary Assembly 89391 na scaffold_101_arrow_ctg1 unplaced-scaffold na na RRCD01000035.1 = NW_022045419.1 Primary Assembly 27420 na scaffold_102_arrow_ctg1 unplaced-scaffold na na RRCD01000036.1 = NW_022045420.1 Primary Assembly 88291 na scaffold_103_arrow_ctg1 unplaced-scaffold na na RRCD01000037.1 = NW_022045421.1 Primary Assembly 52293 na scaffold_105_arrow_ctg1 unplaced-scaffold na na RRCD01000038.1 = NW_022045422.1 Primary Assembly 117061 na scaffold_108_arrow_ctg1 unplaced-scaffold na na RRCD01000039.1 = NW_022045423.1 Primary Assembly 92013 na scaffold_109_arrow_ctg1 unplaced-scaffold na na RRCD01000040.1 = NW_022045424.1 Primary Assembly 58627 na scaffold_110_arrow_ctg1 unplaced-scaffold na na RRCD01000041.1 = NW_022045425.1 Primary Assembly 47716 na scaffold_113_arrow_ctg1 unplaced-scaffold na na RRCD01000042.1 = NW_022045426.1 Primary Assembly 50750 na scaffold_114_arrow_ctg1 unplaced-scaffold na na RRCD01000043.1 = NW_022045427.1 Primary Assembly 21565 na scaffold_116_arrow_ctg1 unplaced-scaffold na na RRCD01000044.1 = NW_022045428.1 Primary Assembly 49460 na scaffold_117_arrow_ctg1 unplaced-scaffold na na RRCD01000045.1 = NW_022045429.1 Primary Assembly 41171 na scaffold_118_arrow_ctg1 unplaced-scaffold na na RRCD01000046.1 = NW_022045430.1 Primary Assembly 27591 na scaffold_119_arrow_ctg1 unplaced-scaffold na na RRCD01000047.1 = NW_022045431.1 Primary Assembly 35133 na scaffold_11_arrow_ctg1 unplaced-scaffold na na RRCD01000048.1 = NW_022045432.1 Primary Assembly 20442 na scaffold_121_arrow_ctg1 unplaced-scaffold na na RRCD01000049.1 = NW_022045433.1 Primary Assembly 33689 na scaffold_122_arrow_ctg1 unplaced-scaffold na na RRCD01000050.1 = NW_022045434.1 Primary Assembly 21202 na scaffold_123_arrow_ctg1 unplaced-scaffold na na RRCD01000051.1 = NW_022045435.1 Primary Assembly 77962 na scaffold_129_arrow_ctg1 unplaced-scaffold na na RRCD01000052.1 = NW_022045436.1 Primary Assembly 39186 na scaffold_12_arrow_ctg1 unplaced-scaffold na na RRCD01000053.1 = NW_022045437.1 Primary Assembly 21624 na scaffold_131_arrow_ctg1 unplaced-scaffold na na RRCD01000054.1 = NW_022045438.1 Primary Assembly 25182 na scaffold_132_arrow_ctg1 unplaced-scaffold na na RRCD01000055.1 = NW_022045439.1 Primary Assembly 34049 na scaffold_133_arrow_ctg1 unplaced-scaffold na na RRCD01000056.1 = NW_022045440.1 Primary Assembly 51633 na scaffold_134_arrow_ctg1 unplaced-scaffold na na RRCD01000057.1 = NW_022045441.1 Primary Assembly 21742 na scaffold_135_arrow_ctg1 unplaced-scaffold na na RRCD01000058.1 = NW_022045442.1 Primary Assembly 22491 na scaffold_138_arrow_ctg1 unplaced-scaffold na na RRCD01000059.1 = NW_022045443.1 Primary Assembly 71357 na scaffold_139_arrow_ctg1 unplaced-scaffold na na RRCD01000060.1 = NW_022045444.1 Primary Assembly 22556 na scaffold_142_arrow_ctg1 unplaced-scaffold na na RRCD01000061.1 = NW_022045445.1 Primary Assembly 31870 na scaffold_143_arrow_ctg1 unplaced-scaffold na na RRCD01000062.1 = NW_022045446.1 Primary Assembly 49694 na scaffold_145_arrow_ctg1 unplaced-scaffold na na RRCD01000063.1 = NW_022045447.1 Primary Assembly 116243 na scaffold_146_arrow_ctg1 unplaced-scaffold na na RRCD01000064.1 = NW_022045448.1 Primary Assembly 103453 na scaffold_147_arrow_ctg1 unplaced-scaffold na na RRCD01000065.1 = NW_022045449.1 Primary Assembly 766393 na scaffold_148_arrow_ctg1 unplaced-scaffold na na RRCD01000066.1 = NW_022045450.1 Primary Assembly 78695 na scaffold_150_arrow_ctg1 unplaced-scaffold na na RRCD01000067.1 = NW_022045451.1 Primary Assembly 93154 na scaffold_151_arrow_ctg1 unplaced-scaffold na na RRCD01000068.1 = NW_022045452.1 Primary Assembly 28870 na scaffold_153_arrow_ctg1 unplaced-scaffold na na RRCD01000069.1 = NW_022045453.1 Primary Assembly 84999 na scaffold_156_arrow_ctg1 unplaced-scaffold na na RRCD01000070.1 = NW_022045454.1 Primary Assembly 21911 na scaffold_158_arrow_ctg1 unplaced-scaffold na na RRCD01000071.1 = NW_022045455.1 Primary Assembly 90337 na scaffold_159_arrow_ctg1 unplaced-scaffold na na RRCD01000072.1 = NW_022045456.1 Primary Assembly 21208 na scaffold_161_arrow_ctg1 unplaced-scaffold na na RRCD01000073.1 = NW_022045457.1 Primary Assembly 40230 na scaffold_162_arrow_ctg1 unplaced-scaffold na na RRCD01000074.1 = NW_022045458.1 Primary Assembly 38283 na scaffold_163_arrow_ctg1 unplaced-scaffold na na RRCD01000075.1 = NW_022045459.1 Primary Assembly 28592 na scaffold_167_arrow_ctg1 unplaced-scaffold na na RRCD01000076.1 = NW_022045460.1 Primary Assembly 40388 na scaffold_168_arrow_ctg1 unplaced-scaffold na na RRCD01000077.1 = NW_022045461.1 Primary Assembly 58669 na scaffold_173_arrow_ctg1 unplaced-scaffold na na RRCD01000078.1 = NW_022045462.1 Primary Assembly 40534 na scaffold_177_arrow_ctg1 unplaced-scaffold na na RRCD01000079.1 = NW_022045463.1 Primary Assembly 65243 na scaffold_178_arrow_ctg1 unplaced-scaffold na na RRCD01000080.1 = NW_022045464.1 Primary Assembly 21095 na scaffold_179_arrow_ctg1 unplaced-scaffold na na RRCD01000081.1 = NW_022045465.1 Primary Assembly 35229 na scaffold_180_arrow_ctg1 unplaced-scaffold na na RRCD01000082.1 = NW_022045466.1 Primary Assembly 20398 na scaffold_181_arrow_ctg1 unplaced-scaffold na na RRCD01000083.1 = NW_022045467.1 Primary Assembly 22300 na scaffold_182_arrow_ctg1 unplaced-scaffold na na RRCD01000084.1 = NW_022045468.1 Primary Assembly 20570 na scaffold_183_arrow_ctg1 unplaced-scaffold na na RRCD01000085.1 = NW_022045469.1 Primary Assembly 433116 na scaffold_188_arrow_ctg1 unplaced-scaffold na na RRCD01000086.1 = NW_022045470.1 Primary Assembly 41118 na scaffold_189_arrow_ctg1 unplaced-scaffold na na RRCD01000087.1 = NW_022045471.1 Primary Assembly 53824 na scaffold_18_arrow_ctg1 unplaced-scaffold na na RRCD01000088.1 = NW_022045472.1 Primary Assembly 49594 na scaffold_190_arrow_ctg1 unplaced-scaffold na na RRCD01000089.1 = NW_022045473.1 Primary Assembly 46001 na scaffold_192_arrow_ctg1 unplaced-scaffold na na RRCD01000090.1 = NW_022045474.1 Primary Assembly 24118 na scaffold_193_arrow_ctg1 unplaced-scaffold na na RRCD01000091.1 = NW_022045475.1 Primary Assembly 53560 na scaffold_194_arrow_ctg1 unplaced-scaffold na na RRCD01000092.1 = NW_022045476.1 Primary Assembly 32702 na scaffold_199_arrow_ctg1 unplaced-scaffold na na RRCD01000093.1 = NW_022045477.1 Primary Assembly 23307 na scaffold_19_arrow_ctg1 unplaced-scaffold na na RRCD01000094.1 = NW_022045478.1 Primary Assembly 27865 na scaffold_203_arrow_ctg1 unplaced-scaffold na na RRCD01000095.1 = NW_022045479.1 Primary Assembly 52906 na scaffold_205_arrow_ctg1 unplaced-scaffold na na RRCD01000096.1 = NW_022045480.1 Primary Assembly 32166 na scaffold_206_arrow_ctg1 unplaced-scaffold na na RRCD01000097.1 = NW_022045481.1 Primary Assembly 45797 na scaffold_208_arrow_ctg1 unplaced-scaffold na na RRCD01000098.1 = NW_022045482.1 Primary Assembly 249319 na scaffold_211_arrow_ctg1 unplaced-scaffold na na RRCD01000099.1 = NW_022045483.1 Primary Assembly 308288 na scaffold_212_arrow_ctg1 unplaced-scaffold na na RRCD01000100.1 = NW_022045484.1 Primary Assembly 51160 na scaffold_213_arrow_ctg1 unplaced-scaffold na na RRCD01000101.1 = NW_022045485.1 Primary Assembly 44165 na scaffold_215_arrow_ctg1 unplaced-scaffold na na RRCD01000102.1 = NW_022045486.1 Primary Assembly 35631 na scaffold_216_arrow_ctg1 unplaced-scaffold na na RRCD01000103.1 = NW_022045487.1 Primary Assembly 33371 na scaffold_217_arrow_ctg1 unplaced-scaffold na na RRCD01000104.1 = NW_022045488.1 Primary Assembly 44418 na scaffold_219_arrow_ctg1 unplaced-scaffold na na RRCD01000105.1 = NW_022045489.1 Primary Assembly 20621 na scaffold_21_arrow_ctg1 unplaced-scaffold na na RRCD01000106.1 = NW_022045490.1 Primary Assembly 55185 na scaffold_220_arrow_ctg1 unplaced-scaffold na na RRCD01000107.1 = NW_022045491.1 Primary Assembly 35027 na scaffold_221_arrow_ctg1 unplaced-scaffold na na RRCD01000108.1 = NW_022045492.1 Primary Assembly 33193 na scaffold_224_arrow_ctg1 unplaced-scaffold na na RRCD01000109.1 = NW_022045493.1 Primary Assembly 47771 na scaffold_227_arrow_ctg1 unplaced-scaffold na na RRCD01000110.1 = NW_022045494.1 Primary Assembly 21147 na scaffold_22_arrow_ctg1 unplaced-scaffold na na RRCD01000111.1 = NW_022045495.1 Primary Assembly 86944 na scaffold_230_arrow_ctg1 unplaced-scaffold na na RRCD01000112.1 = NW_022045496.1 Primary Assembly 21451 na scaffold_232_arrow_ctg1 unplaced-scaffold na na RRCD01000113.1 = NW_022045497.1 Primary Assembly 80082 na scaffold_234_arrow_ctg1 unplaced-scaffold na na RRCD01000114.1 = NW_022045498.1 Primary Assembly 44937 na scaffold_235_arrow_ctg1 unplaced-scaffold na na RRCD01000115.1 = NW_022045499.1 Primary Assembly 21900 na scaffold_23_arrow_ctg1 unplaced-scaffold na na RRCD01000116.1 = NW_022045500.1 Primary Assembly 64517 na scaffold_25_arrow_ctg1 unplaced-scaffold na na RRCD01000117.1 = NW_022045501.1 Primary Assembly 72196 na scaffold_26_arrow_ctg1 unplaced-scaffold na na RRCD01000118.1 = NW_022045502.1 Primary Assembly 114866 na scaffold_27_arrow_ctg1 unplaced-scaffold na na RRCD01000119.1 = NW_022045503.1 Primary Assembly 150140 na scaffold_29_arrow_ctg1 unplaced-scaffold na na RRCD01000120.1 = NW_022045504.1 Primary Assembly 44491 na scaffold_31_arrow_ctg1 unplaced-scaffold na na RRCD01000121.1 = NW_022045505.1 Primary Assembly 4777 na scaffold_32_arrow_ctg1 unplaced-scaffold na na RRCD01000122.1 = NW_022045506.1 Primary Assembly 22773 na scaffold_33_arrow_ctg1 unplaced-scaffold na na RRCD01000123.1 = NW_022045507.1 Primary Assembly 31849 na scaffold_38_arrow_ctg1 unplaced-scaffold na na RRCD01000124.1 = NW_022045508.1 Primary Assembly 29917 na scaffold_39_arrow_ctg1 unplaced-scaffold na na RRCD01000125.1 = NW_022045509.1 Primary Assembly 23626 na scaffold_3_arrow_ctg1 unplaced-scaffold na na RRCD01000126.1 = NW_022045510.1 Primary Assembly 28703 na scaffold_41_arrow_ctg1 unplaced-scaffold na na RRCD01000127.1 = NW_022045511.1 Primary Assembly 34025 na scaffold_44_arrow_ctg1 unplaced-scaffold na na RRCD01000128.1 = NW_022045512.1 Primary Assembly 95945 na scaffold_45_arrow_ctg1 unplaced-scaffold na na RRCD01000129.1 = NW_022045513.1 Primary Assembly 63497 na scaffold_46_arrow_ctg1 unplaced-scaffold na na RRCD01000130.1 = NW_022045514.1 Primary Assembly 51536 na scaffold_47_arrow_ctg1 unplaced-scaffold na na RRCD01000131.1 = NW_022045515.1 Primary Assembly 16959 na scaffold_48_arrow_ctg1 unplaced-scaffold na na RRCD01000132.1 = NW_022045516.1 Primary Assembly 28674 na scaffold_4_arrow_ctg1 unplaced-scaffold na na RRCD01000133.1 = NW_022045517.1 Primary Assembly 44112 na scaffold_56_arrow_ctg1 unplaced-scaffold na na RRCD01000134.1 = NW_022045518.1 Primary Assembly 47374 na scaffold_59_arrow_ctg1 unplaced-scaffold na na RRCD01000135.1 = NW_022045519.1 Primary Assembly 46574 na scaffold_61_arrow_ctg1 unplaced-scaffold na na RRCD01000136.1 = NW_022045520.1 Primary Assembly 29997 na scaffold_63_arrow_ctg1 unplaced-scaffold na na RRCD01000137.1 = NW_022045521.1 Primary Assembly 39109 na scaffold_65_arrow_ctg1 unplaced-scaffold na na RRCD01000138.1 = NW_022045522.1 Primary Assembly 22524 na scaffold_67_arrow_ctg1 unplaced-scaffold na na RRCD01000139.1 = NW_022045523.1 Primary Assembly 73637 na scaffold_68_arrow_ctg1 unplaced-scaffold na na RRCD01000140.1 = NW_022045524.1 Primary Assembly 98386 na scaffold_71_arrow_ctg1 unplaced-scaffold na na RRCD01000141.1 = NW_022045525.1 Primary Assembly 35194 na scaffold_72_arrow_ctg1 unplaced-scaffold na na RRCD01000142.1 = NW_022045526.1 Primary Assembly 486644 na scaffold_75_arrow_ctg1 unplaced-scaffold na na RRCD01000143.1 = NW_022045527.1 Primary Assembly 64650 na scaffold_76_arrow_ctg1 unplaced-scaffold na na RRCD01000144.1 = NW_022045528.1 Primary Assembly 97557 na scaffold_79_arrow_ctg1 unplaced-scaffold na na RRCD01000145.1 = NW_022045529.1 Primary Assembly 222555 na scaffold_81_arrow_ctg1 unplaced-scaffold na na RRCD01000146.1 = NW_022045530.1 Primary Assembly 192870 na scaffold_82_arrow_ctg1 unplaced-scaffold na na RRCD01000147.1 = NW_022045531.1 Primary Assembly 36996 na scaffold_83_arrow_ctg1 unplaced-scaffold na na RRCD01000148.1 = NW_022045532.1 Primary Assembly 24473 na scaffold_84_arrow_ctg1 unplaced-scaffold na na RRCD01000149.1 = NW_022045533.1 Primary Assembly 26327 na scaffold_86_arrow_ctg1 unplaced-scaffold na na RRCD01000150.1 = NW_022045534.1 Primary Assembly 944055 na scaffold_87_arrow_ctg1 unplaced-scaffold na na RRCD01000151.1 = NW_022045535.1 Primary Assembly 361110 na scaffold_89_arrow_ctg1 unplaced-scaffold na na RRCD01000152.1 = NW_022045536.1 Primary Assembly 93331 na scaffold_8_arrow_ctg1 unplaced-scaffold na na RRCD01000153.1 = NW_022045537.1 Primary Assembly 57289 na scaffold_90_arrow_ctg1 unplaced-scaffold na na RRCD01000154.1 = NW_022045538.1 Primary Assembly 73378 na scaffold_91_arrow_ctg1 unplaced-scaffold na na RRCD01000155.1 = NW_022045539.1 Primary Assembly 75794 na scaffold_92_arrow_ctg1 unplaced-scaffold na na RRCD01000156.1 = NW_022045540.1 Primary Assembly 79498 na scaffold_98_arrow_ctg1 unplaced-scaffold na na RRCD01000157.1 = NW_022045541.1 Primary Assembly 26696 na scaffold_99_arrow_ctg1 unplaced-scaffold na na RRCD01000158.1 = NW_022045542.1 Primary Assembly 34028 na scaffold_9_arrow_ctg1 unplaced-scaffold na na RRCD01000159.1 = NW_022045543.1 Primary Assembly 44275 na bCalAnn1_MT assembled-molecule MT Mitochondrion CM016612.1 <> na non-nuclear 18981 na