# Assembly name: mRhiFer1_v1.p # Organism name: Rhinolophus ferrumequinum (greater horseshoe bat) # Isolate: MPI-CBG mRhiFer1 # Sex: male # Taxid: 59479 # BioSample: SAMN09948510 # BioProject: PRJNA489106 # Submitter: Vertebrate Genomes Project # Date: 2019-05-16 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: RXPC01 # Assembly method: FALCON-Unzip v. 1.0.2; scaff10X v. git 4.28.2018; Bionano Solve v. BspQI/BssSI 3.2.1; Salsa2 v. HiC 2.0; purge_haplotigs v. bit 7.10.2018; smrtanalysis Arrow polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; FALCON v. 5.1.1; freebayes v. 1.2.0; gEVAL manual curation v. 2018-09-07 # Expected final version: no # Genome coverage: 52.8x # Sequencing technology: PacBio Sequel; 10X Genomics linked reads; Bionano Genomics 2 enzyme; Phase Genomics HiC # GenBank assembly accession: GCA_004115265.2 # RefSeq assembly accession: GCF_004115265.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_004115285.1 GCF_004115285.1 Primary Assembly ## GCA_005460165.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold_80_arrow_ctg1 assembled-molecule 1 Chromosome CM014226.1 = NC_046284.1 Primary Assembly 124933378 na scaffold_5_arrow_ctg1 assembled-molecule 2 Chromosome CM014227.1 = NC_046285.1 Primary Assembly 109261889 na scaffold_36_arrow_ctg1_5 assembled-molecule 3 Chromosome CM014228.1 = NC_046286.1 Primary Assembly 104300736 na scaffold_36_arrow_ctg1 assembled-molecule 4 Chromosome CM014229.1 = NC_046287.1 Primary Assembly 106206046 na scaffold_110_arrow_ctg1_1 assembled-molecule 5 Chromosome CM014230.1 = NC_046288.1 Primary Assembly 88025743 na scaffold_58_arrow_ctg1 assembled-molecule 6 Chromosome CM014231.1 = NC_046289.1 Primary Assembly 101153585 na scaffold_17_arrow_ctg1_1 assembled-molecule 7 Chromosome CM014232.1 = NC_046290.1 Primary Assembly 100276429 na scaffold_57_arrow_ctg1 assembled-molecule 8 Chromosome CM014233.1 = NC_046291.1 Primary Assembly 97569473 na Super_Scaffold_1 assembled-molecule 9 Chromosome CM014234.1 = NC_046292.1 Primary Assembly 94502422 na scaffold_3_arrow_ctg1 assembled-molecule 10 Chromosome CM014235.1 = NC_046293.1 Primary Assembly 92464824 na scaffold_13_arrow_ctg1 assembled-molecule 11 Chromosome CM014236.1 = NC_046294.1 Primary Assembly 89119429 na scaffold_106_arrow_ctg1_1 assembled-molecule 12 Chromosome CM014237.1 = NC_046295.1 Primary Assembly 83956141 na Super_Scaffold_4 assembled-molecule 13 Chromosome CM014238.1 = NC_046296.1 Primary Assembly 71409564 na scaffold_17_arrow_ctg1 assembled-molecule 14 Chromosome CM014239.1 = NC_046297.1 Primary Assembly 73406552 na scaffold_54_arrow_ctg1 assembled-molecule 15 Chromosome CM014240.1 = NC_046298.1 Primary Assembly 51055830 na Super_Scaffold_2 assembled-molecule 16 Chromosome CM014241.1 = NC_046299.1 Primary Assembly 67738280 na scaffold_106_arrow_ctg1 assembled-molecule 17 Chromosome CM014242.1 = NC_046300.1 Primary Assembly 66937833 na scaffold_111_arrow_ctg1 assembled-molecule 18 Chromosome CM014243.1 = NC_046301.1 Primary Assembly 62623004 na scaffold_6_arrow_ctg1_1 assembled-molecule 19 Chromosome CM014244.1 = NC_046302.1 Primary Assembly 60482744 na scaffold_36_arrow_ctg1_3 assembled-molecule 20 Chromosome CM014245.1 = NC_046303.1 Primary Assembly 57783881 na scaffold_36_arrow_ctg1_2 assembled-molecule 21 Chromosome CM014246.1 = NC_046304.1 Primary Assembly 55572441 na scaffold_75_arrow_ctg1 assembled-molecule 22 Chromosome CM014247.1 = NC_046305.1 Primary Assembly 53307308 na scaffold_108_arrow_ctg1 assembled-molecule 23 Chromosome CM014248.1 = NC_046306.1 Primary Assembly 45543787 na scaffold_82_arrow_ctg1 assembled-molecule 24 Chromosome CM014249.1 = NC_046307.1 Primary Assembly 44817474 na scaffold_6_arrow_ctg1 assembled-molecule 25 Chromosome CM014250.1 = NC_046308.1 Primary Assembly 40340809 na scaffold_59_arrow_ctg1_1 assembled-molecule 26 Chromosome CM014251.1 = NC_046309.1 Primary Assembly 30135795 na scaffold_59_arrow_ctg1 assembled-molecule 27 Chromosome CM014252.1 = NC_046310.1 Primary Assembly 27843844 na scaffold_77_arrow_ctg1 assembled-molecule 28 Chromosome CM014253.1 = NC_046311.1 Primary Assembly 16664288 na scaffold_36_arrow_ctg1_4 unlocalized-scaffold 3 Chromosome RXPC01000059.1 = NW_022680354.1 Primary Assembly 3056996 na scaffold_110_arrow_ctg1 unlocalized-scaffold 5 Chromosome RXPC01000012.1 = NW_022680355.1 Primary Assembly 17697288 na Super_scaffold_3 unlocalized-scaffold 13 Chromosome RXPC01000120.1 = NW_022680356.1 Primary Assembly 3464518 na scaffold_54_arrow_ctg1_1 unlocalized-scaffold 15 Chromosome RXPC01000080.1 = NW_022680357.1 Primary Assembly 19127987 na scaffold_100_arrow_ctg1 unplaced-scaffold na na RXPC01000001.1 = NW_022680358.1 Primary Assembly 38342 na scaffold_101_arrow_ctg1 unplaced-scaffold na na RXPC01000002.1 = NW_022680359.1 Primary Assembly 35582 na scaffold_103_arrow_ctg1 unplaced-scaffold na na RXPC01000003.1 = NW_022680360.1 Primary Assembly 35782 na scaffold_104_arrow_ctg1 unplaced-scaffold na na RXPC01000004.1 = NW_022680361.1 Primary Assembly 69437 na scaffold_105_arrow_ctg1 unplaced-scaffold na na RXPC01000005.1 = NW_022680362.1 Primary Assembly 22512 na scaffold_107_arrow_ctg1 unplaced-scaffold na na RXPC01000008.1 = NW_022680363.1 Primary Assembly 28201 na scaffold_109_arrow_ctg1 unplaced-scaffold na na RXPC01000010.1 = NW_022680364.1 Primary Assembly 4123485 na scaffold_10_arrow_ctg1 unplaced-scaffold na na RXPC01000011.1 = NW_022680365.1 Primary Assembly 25574 na scaffold_113_arrow_ctg1 unplaced-scaffold na na RXPC01000015.1 = NW_022680366.1 Primary Assembly 32225 na scaffold_114_arrow_ctg1 unplaced-scaffold na na RXPC01000016.1 = NW_022680367.1 Primary Assembly 22230 na scaffold_115_arrow_ctg1 unplaced-scaffold na na RXPC01000017.1 = NW_022680368.1 Primary Assembly 28126 na scaffold_116_arrow_ctg1 unplaced-scaffold na na RXPC01000018.1 = NW_022680369.1 Primary Assembly 94986 na scaffold_117_arrow_ctg1 unplaced-scaffold na na RXPC01000019.1 = NW_022680370.1 Primary Assembly 21031 na scaffold_118_arrow_ctg1 unplaced-scaffold na na RXPC01000020.1 = NW_022680371.1 Primary Assembly 28568 na scaffold_119_arrow_ctg1 unplaced-scaffold na na RXPC01000021.1 = NW_022680372.1 Primary Assembly 54335 na scaffold_11_arrow_ctg1 unplaced-scaffold na na RXPC01000022.1 = NW_022680373.1 Primary Assembly 35478 na scaffold_120_arrow_ctg1 unplaced-scaffold na na RXPC01000023.1 = NW_022680374.1 Primary Assembly 59794 na scaffold_121_arrow_ctg1 unplaced-scaffold na na RXPC01000024.1 = NW_022680375.1 Primary Assembly 24624 na scaffold_122_arrow_ctg1 unplaced-scaffold na na RXPC01000025.1 = NW_022680376.1 Primary Assembly 28130 na scaffold_123_arrow_ctg1 unplaced-scaffold na na RXPC01000026.1 = NW_022680377.1 Primary Assembly 28708 na scaffold_124_arrow_ctg1 unplaced-scaffold na na RXPC01000027.1 = NW_022680378.1 Primary Assembly 26058 na scaffold_125_arrow_ctg1 unplaced-scaffold na na RXPC01000028.1 = NW_022680379.1 Primary Assembly 36200 na scaffold_126_arrow_ctg1 unplaced-scaffold na na RXPC01000029.1 = NW_022680380.1 Primary Assembly 31206 na scaffold_12_arrow_ctg1 unplaced-scaffold na na RXPC01000030.1 = NW_022680381.1 Primary Assembly 22854 na scaffold_18_arrow_ctg1 unplaced-scaffold na na RXPC01000034.1 = NW_022680382.1 Primary Assembly 31180 na scaffold_19_arrow_ctg1 unplaced-scaffold na na RXPC01000035.1 = NW_022680383.1 Primary Assembly 61332 na scaffold_1_arrow_ctg1 unplaced-scaffold na na RXPC01000036.1 = NW_022680384.1 Primary Assembly 26839 na scaffold_20_arrow_ctg1 unplaced-scaffold na na RXPC01000037.1 = NW_022680385.1 Primary Assembly 58373 na scaffold_21_arrow_ctg1 unplaced-scaffold na na RXPC01000038.1 = NW_022680386.1 Primary Assembly 38671 na scaffold_23_arrow_ctg1 unplaced-scaffold na na RXPC01000039.1 = NW_022680387.1 Primary Assembly 37961 na scaffold_24_arrow_ctg1 unplaced-scaffold na na RXPC01000040.1 = NW_022680388.1 Primary Assembly 30452 na scaffold_25_arrow_ctg1 unplaced-scaffold na na RXPC01000041.1 = NW_022680389.1 Primary Assembly 21195 na scaffold_26_arrow_ctg1 unplaced-scaffold na na RXPC01000042.1 = NW_022680390.1 Primary Assembly 23681 na scaffold_27_arrow_ctg1 unplaced-scaffold na na RXPC01000043.1 = NW_022680391.1 Primary Assembly 84191 na scaffold_28_arrow_ctg1 unplaced-scaffold na na RXPC01000044.1 = NW_022680392.1 Primary Assembly 50406 na scaffold_29_arrow_ctg1 unplaced-scaffold na na RXPC01000045.1 = NW_022680393.1 Primary Assembly 29787 na scaffold_2_arrow_ctg1 unplaced-scaffold na na RXPC01000046.1 = NW_022680394.1 Primary Assembly 48401 na scaffold_30_arrow_ctg1 unplaced-scaffold na na RXPC01000047.1 = NW_022680395.1 Primary Assembly 22749 na scaffold_31_arrow_ctg1 unplaced-scaffold na na RXPC01000048.1 = NW_022680396.1 Primary Assembly 44692 na scaffold_32_arrow_ctg1 unplaced-scaffold na na RXPC01000049.1 = NW_022680397.1 Primary Assembly 20691 na scaffold_33_arrow_ctg1 unplaced-scaffold na na RXPC01000050.1 = NW_022680398.1 Primary Assembly 34775 na scaffold_34_arrow_ctg1 unplaced-scaffold na na RXPC01000051.1 = NW_022680399.1 Primary Assembly 26673 na scaffold_35_arrow_ctg1 unplaced-scaffold na na RXPC01000052.1 = NW_022680400.1 Primary Assembly 22629 na scaffold_36_arrow_ctg1_1 unplaced-scaffold na na RXPC01000054.1 = NW_022680401.1 Primary Assembly 26816 na scaffold_37_arrow_ctg1 unplaced-scaffold na na RXPC01000060.1 = NW_022680402.1 Primary Assembly 24314 na scaffold_38_arrow_ctg1 unplaced-scaffold na na RXPC01000061.1 = NW_022680403.1 Primary Assembly 35733 na scaffold_39_arrow_ctg1 unplaced-scaffold na na RXPC01000062.1 = NW_022680404.1 Primary Assembly 24568 na scaffold_40_arrow_ctg1 unplaced-scaffold na na RXPC01000064.1 = NW_022680405.1 Primary Assembly 26806 na scaffold_41_arrow_ctg1 unplaced-scaffold na na RXPC01000065.1 = NW_022680406.1 Primary Assembly 34764 na scaffold_43_arrow_ctg1 unplaced-scaffold na na RXPC01000066.1 = NW_022680407.1 Primary Assembly 28657 na scaffold_43_arrow_ctg1_1 unplaced-scaffold na na RXPC01000067.1 = NW_022680408.1 Primary Assembly 88563 na scaffold_43_arrow_ctg1_2 unplaced-scaffold na na RXPC01000068.1 = NW_022680409.1 Primary Assembly 43431 na scaffold_44_arrow_ctg1 unplaced-scaffold na na RXPC01000069.1 = NW_022680410.1 Primary Assembly 32767 na scaffold_45_arrow_ctg1 unplaced-scaffold na na RXPC01000070.1 = NW_022680411.1 Primary Assembly 20715 na scaffold_46_arrow_ctg1 unplaced-scaffold na na RXPC01000071.1 = NW_022680412.1 Primary Assembly 42311 na scaffold_47_arrow_ctg1 unplaced-scaffold na na RXPC01000072.1 = NW_022680413.1 Primary Assembly 42748 na scaffold_48_arrow_ctg1 unplaced-scaffold na na RXPC01000073.1 = NW_022680414.1 Primary Assembly 26420 na scaffold_4_arrow_ctg1 unplaced-scaffold na na RXPC01000074.1 = NW_022680415.1 Primary Assembly 27108 na scaffold_50_arrow_ctg1 unplaced-scaffold na na RXPC01000075.1 = NW_022680416.1 Primary Assembly 26816 na scaffold_51_arrow_ctg1 unplaced-scaffold na na RXPC01000076.1 = NW_022680417.1 Primary Assembly 24456 na scaffold_52_arrow_ctg1 unplaced-scaffold na na RXPC01000077.1 = NW_022680418.1 Primary Assembly 166403 na scaffold_53_arrow_ctg1 unplaced-scaffold na na RXPC01000078.1 = NW_022680419.1 Primary Assembly 24484 na scaffold_55_arrow_ctg1 unplaced-scaffold na na RXPC01000081.1 = NW_022680420.1 Primary Assembly 52154 na scaffold_56_arrow_ctg1 unplaced-scaffold na na RXPC01000082.1 = NW_022680421.1 Primary Assembly 276836 na scaffold_57_arrow_ctg1_1 unplaced-scaffold na na RXPC01000084.1 = NW_022680422.1 Primary Assembly 183554 na scaffold_58_arrow_ctg1_1 unplaced-scaffold na na RXPC01000087.1 = NW_022680423.1 Primary Assembly 895468 na scaffold_61_arrow_ctg1 unplaced-scaffold na na RXPC01000091.1 = NW_022680424.1 Primary Assembly 43558 na scaffold_62_arrow_ctg1 unplaced-scaffold na na RXPC01000092.1 = NW_022680425.1 Primary Assembly 21649 na scaffold_63_arrow_ctg1 unplaced-scaffold na na RXPC01000093.1 = NW_022680426.1 Primary Assembly 163562 na scaffold_64_arrow_ctg1 unplaced-scaffold na na RXPC01000094.1 = NW_022680427.1 Primary Assembly 68083 na scaffold_65_arrow_ctg1 unplaced-scaffold na na RXPC01000095.1 = NW_022680428.1 Primary Assembly 36393 na scaffold_66_arrow_ctg1 unplaced-scaffold na na RXPC01000096.1 = NW_022680429.1 Primary Assembly 35100 na scaffold_67_arrow_ctg1 unplaced-scaffold na na RXPC01000097.1 = NW_022680430.1 Primary Assembly 81566 na scaffold_68_arrow_ctg1 unplaced-scaffold na na RXPC01000098.1 = NW_022680431.1 Primary Assembly 26019 na scaffold_69_arrow_ctg1 unplaced-scaffold na na RXPC01000099.1 = NW_022680432.1 Primary Assembly 28253 na scaffold_70_arrow_ctg1 unplaced-scaffold na na RXPC01000102.1 = NW_022680433.1 Primary Assembly 20948 na scaffold_71_arrow_ctg1 unplaced-scaffold na na RXPC01000103.1 = NW_022680434.1 Primary Assembly 42389 na scaffold_72_arrow_ctg1 unplaced-scaffold na na RXPC01000104.1 = NW_022680435.1 Primary Assembly 29160 na scaffold_73_arrow_ctg1 unplaced-scaffold na na RXPC01000105.1 = NW_022680436.1 Primary Assembly 31344 na scaffold_78_arrow_ctg1 unplaced-scaffold na na RXPC01000108.1 = NW_022680437.1 Primary Assembly 80401 na scaffold_7_arrow_ctg1 unplaced-scaffold na na RXPC01000109.1 = NW_022680438.1 Primary Assembly 27797 na scaffold_83_arrow_ctg1 unplaced-scaffold na na RXPC01000113.1 = NW_022680439.1 Primary Assembly 56689 na scaffold_84_arrow_ctg1 unplaced-scaffold na na RXPC01000114.1 = NW_022680440.1 Primary Assembly 2644450 na scaffold_84_arrow_ctg1_1 unplaced-scaffold na na RXPC01000115.1 = NW_022680441.1 Primary Assembly 101342 na scaffold_85_arrow_ctg1 unplaced-scaffold na na RXPC01000116.1 = NW_022680442.1 Primary Assembly 25994 na scaffold_86_arrow_ctg1 unplaced-scaffold na na RXPC01000117.1 = NW_022680443.1 Primary Assembly 101178 na scaffold_87_arrow_ctg1 unplaced-scaffold na na RXPC01000118.1 = NW_022680444.1 Primary Assembly 82873 na scaffold_87_arrow_ctg1_1 unplaced-scaffold na na RXPC01000119.1 = NW_022680445.1 Primary Assembly 2694875 na scaffold_88_arrow_ctg1 unplaced-scaffold na na RXPC01000121.1 = NW_022680446.1 Primary Assembly 71269 na scaffold_89_arrow_ctg1 unplaced-scaffold na na RXPC01000122.1 = NW_022680447.1 Primary Assembly 55334 na scaffold_8_arrow_ctg1 unplaced-scaffold na na RXPC01000123.1 = NW_022680448.1 Primary Assembly 34840 na scaffold_90_arrow_ctg1 unplaced-scaffold na na RXPC01000124.1 = NW_022680449.1 Primary Assembly 41704 na scaffold_91_arrow_ctg1 unplaced-scaffold na na RXPC01000125.1 = NW_022680450.1 Primary Assembly 105951 na scaffold_92_arrow_ctg1 unplaced-scaffold na na RXPC01000126.1 = NW_022680451.1 Primary Assembly 62088 na scaffold_93_arrow_ctg1 unplaced-scaffold na na RXPC01000127.1 = NW_022680452.1 Primary Assembly 34672 na scaffold_94_arrow_ctg1 unplaced-scaffold na na RXPC01000128.1 = NW_022680453.1 Primary Assembly 48573 na scaffold_95_arrow_ctg1 unplaced-scaffold na na RXPC01000129.1 = NW_022680454.1 Primary Assembly 104322 na scaffold_96_arrow_ctg1 unplaced-scaffold na na RXPC01000130.1 = NW_022680455.1 Primary Assembly 26410 na scaffold_97_arrow_ctg1 unplaced-scaffold na na RXPC01000131.1 = NW_022680456.1 Primary Assembly 34361 na scaffold_98_arrow_ctg1 unplaced-scaffold na na RXPC01000132.1 = NW_022680457.1 Primary Assembly 26769 na scaffold_99_arrow_ctg1 unplaced-scaffold na na RXPC01000133.1 = NW_022680458.1 Primary Assembly 21582 na scaffold_9_arrow_ctg1 unplaced-scaffold na na RXPC01000134.1 = NW_022680459.1 Primary Assembly 32708 na mRhiFer1_MT assembled-molecule MT Mitochondrion CM016610.1 <> na non-nuclear 16838 na