# Assembly name: ASM438218v1 # Organism name: Drosophila simulans (flies) # Infraspecific name: strain=WXD1 # Sex: male # Taxid: 7240 # BioSample: SAMN06827977 # BioProject: PRJNA383250 # Submitter: University of California, Irvine # Date: 2019-04-16 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: NIFY01 # Assembly method: WGS v. 8.3rc1; DBG2OLC v. 1; Quickmerge v. 0.1 # Expected final version: yes # Genome coverage: 160.0x # Sequencing technology: PacBio # GenBank assembly accession: GCA_004382185.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_004382265.1 Primary Assembly ## GCA_004382285.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name 2L assembled-molecule 2L Chromosome CM015606.1 <> na Primary Assembly 24213528 na 2R assembled-molecule 2R Chromosome CM015607.1 <> na Primary Assembly 23239221 na 3L assembled-molecule 3L Chromosome CM015608.1 <> na Primary Assembly 26221060 na 3R assembled-molecule 3R Chromosome CM015609.1 <> na Primary Assembly 28742805 na 4 assembled-molecule 4 Chromosome CM015610.1 <> na Primary Assembly 1158126 na X assembled-molecule X Chromosome CM015611.1 <> na Primary Assembly 23123156 na U_0 unplaced-scaffold na na NIFY01000007.1 <> na Primary Assembly 46458 na U_1 unplaced-scaffold na na NIFY01000008.1 <> na Primary Assembly 45249 na U_2 unplaced-scaffold na na NIFY01000009.1 <> na Primary Assembly 52261 na U_3 unplaced-scaffold na na NIFY01000010.1 <> na Primary Assembly 42853 na U_4 unplaced-scaffold na na NIFY01000011.1 <> na Primary Assembly 220545 na U_5 unplaced-scaffold na na NIFY01000012.1 <> na Primary Assembly 183965 na U_6 unplaced-scaffold na na NIFY01000013.1 <> na Primary Assembly 42383 na U_7 unplaced-scaffold na na NIFY01000014.1 <> na Primary Assembly 189830 na U_8 unplaced-scaffold na na NIFY01000015.1 <> na Primary Assembly 53700 na U_9 unplaced-scaffold na na NIFY01000016.1 <> na Primary Assembly 204046 na U_10 unplaced-scaffold na na NIFY01000017.1 <> na Primary Assembly 32557 na U_11 unplaced-scaffold na na NIFY01000018.1 <> na Primary Assembly 39722 na U_12 unplaced-scaffold na na NIFY01000019.1 <> na Primary Assembly 118797 na U_13 unplaced-scaffold na na NIFY01000020.1 <> na Primary Assembly 64228 na U_14 unplaced-scaffold na na NIFY01000021.1 <> na Primary Assembly 98595 na U_15 unplaced-scaffold na na NIFY01000022.1 <> na Primary Assembly 91047 na U_16 unplaced-scaffold na na NIFY01000023.1 <> na Primary Assembly 169684 na U_17 unplaced-scaffold na na NIFY01000024.1 <> na Primary Assembly 108469 na U_18 unplaced-scaffold na na NIFY01000025.1 <> na Primary Assembly 120391 na U_19 unplaced-scaffold na na NIFY01000026.1 <> na Primary Assembly 45909 na U_20 unplaced-scaffold na na NIFY01000027.1 <> na Primary Assembly 121885 na U_21 unplaced-scaffold na na NIFY01000028.1 <> na Primary Assembly 169106 na U_22 unplaced-scaffold na na NIFY01000029.1 <> na Primary Assembly 49433 na U_23 unplaced-scaffold na na NIFY01000030.1 <> na Primary Assembly 76745 na U_24 unplaced-scaffold na na NIFY01000031.1 <> na Primary Assembly 77327 na U_25 unplaced-scaffold na na NIFY01000032.1 <> na Primary Assembly 78035 na U_26 unplaced-scaffold na na NIFY01000033.1 <> na Primary Assembly 62881 na U_27 unplaced-scaffold na na NIFY01000034.1 <> na Primary Assembly 54458 na U_28 unplaced-scaffold na na NIFY01000035.1 <> na Primary Assembly 81923 na U_29 unplaced-scaffold na na NIFY01000036.1 <> na Primary Assembly 68108 na U_30 unplaced-scaffold na na NIFY01000037.1 <> na Primary Assembly 93015 na U_31 unplaced-scaffold na na NIFY01000038.1 <> na Primary Assembly 67370 na U_32 unplaced-scaffold na na NIFY01000039.1 <> na Primary Assembly 89922 na U_33 unplaced-scaffold na na NIFY01000040.1 <> na Primary Assembly 75205 na U_34 unplaced-scaffold na na NIFY01000041.1 <> na Primary Assembly 84124 na U_35 unplaced-scaffold na na NIFY01000042.1 <> na Primary Assembly 50029 na U_36 unplaced-scaffold na na NIFY01000043.1 <> na Primary Assembly 64240 na U_37 unplaced-scaffold na na NIFY01000044.1 <> na Primary Assembly 53444 na U_38 unplaced-scaffold na na NIFY01000045.1 <> na Primary Assembly 51034 na U_39 unplaced-scaffold na na NIFY01000046.1 <> na Primary Assembly 80341 na U_40 unplaced-scaffold na na NIFY01000047.1 <> na Primary Assembly 59359 na U_41 unplaced-scaffold na na NIFY01000048.1 <> na Primary Assembly 53503 na U_42 unplaced-scaffold na na NIFY01000049.1 <> na Primary Assembly 43442 na U_43 unplaced-scaffold na na NIFY01000050.1 <> na Primary Assembly 98119 na U_44 unplaced-scaffold na na NIFY01000051.1 <> na Primary Assembly 53728 na U_45 unplaced-scaffold na na NIFY01000052.1 <> na Primary Assembly 59446 na U_46 unplaced-scaffold na na NIFY01000053.1 <> na Primary Assembly 38914 na U_47 unplaced-scaffold na na NIFY01000054.1 <> na Primary Assembly 35960 na U_48 unplaced-scaffold na na NIFY01000055.1 <> na Primary Assembly 29140 na U_49 unplaced-scaffold na na NIFY01000056.1 <> na Primary Assembly 51654 na U_50 unplaced-scaffold na na NIFY01000057.1 <> na Primary Assembly 51632 na U_51 unplaced-scaffold na na NIFY01000058.1 <> na Primary Assembly 40470 na U_52 unplaced-scaffold na na NIFY01000059.1 <> na Primary Assembly 33350 na U_53 unplaced-scaffold na na NIFY01000060.1 <> na Primary Assembly 52861 na U_54 unplaced-scaffold na na NIFY01000061.1 <> na Primary Assembly 47751 na U_55 unplaced-scaffold na na NIFY01000062.1 <> na Primary Assembly 49208 na U_56 unplaced-scaffold na na NIFY01000063.1 <> na Primary Assembly 54359 na U_57 unplaced-scaffold na na NIFY01000064.1 <> na Primary Assembly 105981 na U_58 unplaced-scaffold na na NIFY01000065.1 <> na Primary Assembly 108638 na U_59 unplaced-scaffold na na NIFY01000066.1 <> na Primary Assembly 33493 na U_60 unplaced-scaffold na na NIFY01000067.1 <> na Primary Assembly 33250 na U_61 unplaced-scaffold na na NIFY01000068.1 <> na Primary Assembly 32547 na U_62 unplaced-scaffold na na NIFY01000069.1 <> na Primary Assembly 68338 na U_63 unplaced-scaffold na na NIFY01000070.1 <> na Primary Assembly 60471 na U_64 unplaced-scaffold na na NIFY01000071.1 <> na Primary Assembly 38971 na U_65 unplaced-scaffold na na NIFY01000072.1 <> na Primary Assembly 36335 na U_66 unplaced-scaffold na na NIFY01000073.1 <> na Primary Assembly 73108 na U_67 unplaced-scaffold na na NIFY01000074.1 <> na Primary Assembly 47473 na U_68 unplaced-scaffold na na NIFY01000075.1 <> na Primary Assembly 34530 na U_69 unplaced-scaffold na na NIFY01000076.1 <> na Primary Assembly 31664 na U_70 unplaced-scaffold na na NIFY01000077.1 <> na Primary Assembly 28210 na U_71 unplaced-scaffold na na NIFY01000078.1 <> na Primary Assembly 43639 na U_72 unplaced-scaffold na na NIFY01000079.1 <> na Primary Assembly 45107 na U_73 unplaced-scaffold na na NIFY01000080.1 <> na Primary Assembly 31481 na U_74 unplaced-scaffold na na NIFY01000081.1 <> na Primary Assembly 44731 na U_75 unplaced-scaffold na na NIFY01000082.1 <> na Primary Assembly 33555 na U_76 unplaced-scaffold na na NIFY01000083.1 <> na Primary Assembly 37887 na U_77 unplaced-scaffold na na NIFY01000084.1 <> na Primary Assembly 29593 na U_78 unplaced-scaffold na na NIFY01000085.1 <> na Primary Assembly 46121 na U_79 unplaced-scaffold na na NIFY01000086.1 <> na Primary Assembly 35525 na U_80 unplaced-scaffold na na NIFY01000087.1 <> na Primary Assembly 36937 na U_81 unplaced-scaffold na na NIFY01000088.1 <> na Primary Assembly 30452 na U_82 unplaced-scaffold na na NIFY01000089.1 <> na Primary Assembly 36198 na U_83 unplaced-scaffold na na NIFY01000090.1 <> na Primary Assembly 28179 na U_84 unplaced-scaffold na na NIFY01000091.1 <> na Primary Assembly 27960 na U_85 unplaced-scaffold na na NIFY01000092.1 <> na Primary Assembly 29512 na U_86 unplaced-scaffold na na NIFY01000093.1 <> na Primary Assembly 35145 na U_87 unplaced-scaffold na na NIFY01000094.1 <> na Primary Assembly 53422 na U_88 unplaced-scaffold na na NIFY01000095.1 <> na Primary Assembly 43138 na U_89 unplaced-scaffold na na NIFY01000096.1 <> na Primary Assembly 36522 na U_90 unplaced-scaffold na na NIFY01000097.1 <> na Primary Assembly 28506 na U_91 unplaced-scaffold na na NIFY01000098.1 <> na Primary Assembly 29904 na U_92 unplaced-scaffold na na NIFY01000099.1 <> na Primary Assembly 30670 na U_93 unplaced-scaffold na na NIFY01000100.1 <> na Primary Assembly 32890 na U_94 unplaced-scaffold na na NIFY01000101.1 <> na Primary Assembly 29573 na U_95 unplaced-scaffold na na NIFY01000102.1 <> na Primary Assembly 27215 na U_96 unplaced-scaffold na na NIFY01000103.1 <> na Primary Assembly 36489 na U_97 unplaced-scaffold na na NIFY01000104.1 <> na Primary Assembly 49107 na U_98 unplaced-scaffold na na NIFY01000105.1 <> na Primary Assembly 44530 na U_99 unplaced-scaffold na na NIFY01000106.1 <> na Primary Assembly 187572 na U_100 unplaced-scaffold na na NIFY01000107.1 <> na Primary Assembly 31605 na U_101 unplaced-scaffold na na NIFY01000108.1 <> na Primary Assembly 125255 na U_102 unplaced-scaffold na na NIFY01000109.1 <> na Primary Assembly 233336 na U_103 unplaced-scaffold na na NIFY01000110.1 <> na Primary Assembly 58938 na U_104 unplaced-scaffold na na NIFY01000111.1 <> na Primary Assembly 43108 na U_105 unplaced-scaffold na na NIFY01000112.1 <> na Primary Assembly 28468 na U_106 unplaced-scaffold na na NIFY01000113.1 <> na Primary Assembly 31746 na U_107 unplaced-scaffold na na NIFY01000114.1 <> na Primary Assembly 47935 na U_108 unplaced-scaffold na na NIFY01000115.1 <> na Primary Assembly 88883 na U_109 unplaced-scaffold na na NIFY01000116.1 <> na Primary Assembly 52107 na U_110 unplaced-scaffold na na NIFY01000117.1 <> na Primary Assembly 54867 na U_111 unplaced-scaffold na na NIFY01000118.1 <> na Primary Assembly 38969 na U_112 unplaced-scaffold na na NIFY01000119.1 <> na Primary Assembly 42530 na U_113 unplaced-scaffold na na NIFY01000120.1 <> na Primary Assembly 47765 na U_114 unplaced-scaffold na na NIFY01000121.1 <> na Primary Assembly 42893 na U_115 unplaced-scaffold na na NIFY01000122.1 <> na Primary Assembly 47639 na U_116 unplaced-scaffold na na NIFY01000123.1 <> na Primary Assembly 38518 na U_117 unplaced-scaffold na na NIFY01000124.1 <> na Primary Assembly 40089 na U_118 unplaced-scaffold na na NIFY01000125.1 <> na Primary Assembly 43029 na U_119 unplaced-scaffold na na NIFY01000126.1 <> na Primary Assembly 42861 na U_120 unplaced-scaffold na na NIFY01000127.1 <> na Primary Assembly 67702 na U_121 unplaced-scaffold na na NIFY01000128.1 <> na Primary Assembly 66173 na U_122 unplaced-scaffold na na NIFY01000129.1 <> na Primary Assembly 31712 na U_123 unplaced-scaffold na na NIFY01000130.1 <> na Primary Assembly 40583 na U_124 unplaced-scaffold na na NIFY01000131.1 <> na Primary Assembly 71192 na U_125 unplaced-scaffold na na NIFY01000132.1 <> na Primary Assembly 46620 na U_126 unplaced-scaffold na na NIFY01000133.1 <> na Primary Assembly 50346 na U_127 unplaced-scaffold na na NIFY01000134.1 <> na Primary Assembly 52827 na U_128 unplaced-scaffold na na NIFY01000135.1 <> na Primary Assembly 58157 na U_129 unplaced-scaffold na na NIFY01000136.1 <> na Primary Assembly 55462 na U_130 unplaced-scaffold na na NIFY01000137.1 <> na Primary Assembly 46357 na U_131 unplaced-scaffold na na NIFY01000138.1 <> na Primary Assembly 41077 na U_132 unplaced-scaffold na na NIFY01000139.1 <> na Primary Assembly 52169 na U_133 unplaced-scaffold na na NIFY01000140.1 <> na Primary Assembly 57502 na U_134 unplaced-scaffold na na NIFY01000141.1 <> na Primary Assembly 50812 na U_135 unplaced-scaffold na na NIFY01000142.1 <> na Primary Assembly 43425 na U_136 unplaced-scaffold na na NIFY01000143.1 <> na Primary Assembly 393354 na U_137 unplaced-scaffold na na NIFY01000144.1 <> na Primary Assembly 46384 na U_138 unplaced-scaffold na na NIFY01000145.1 <> na Primary Assembly 53667 na U_139 unplaced-scaffold na na NIFY01000146.1 <> na Primary Assembly 39987 na U_140 unplaced-scaffold na na NIFY01000147.1 <> na Primary Assembly 44931 na U_141 unplaced-scaffold na na NIFY01000148.1 <> na Primary Assembly 75159 na U_142 unplaced-scaffold na na NIFY01000149.1 <> na Primary Assembly 42209 na U_143 unplaced-scaffold na na NIFY01000150.1 <> na Primary Assembly 45586 na U_144 unplaced-scaffold na na NIFY01000151.1 <> na Primary Assembly 43001 na U_145 unplaced-scaffold na na NIFY01000152.1 <> na Primary Assembly 42378 na U_146 unplaced-scaffold na na NIFY01000153.1 <> na Primary Assembly 49137 na U_147 unplaced-scaffold na na NIFY01000154.1 <> na Primary Assembly 38208 na U_148 unplaced-scaffold na na NIFY01000155.1 <> na Primary Assembly 78670 na U_149 unplaced-scaffold na na NIFY01000156.1 <> na Primary Assembly 47191 na U_150 unplaced-scaffold na na NIFY01000157.1 <> na Primary Assembly 100375 na U_151 unplaced-scaffold na na NIFY01000158.1 <> na Primary Assembly 63405 na U_152 unplaced-scaffold na na NIFY01000159.1 <> na Primary Assembly 35305 na U_153 unplaced-scaffold na na NIFY01000160.1 <> na Primary Assembly 61558 na U_154 unplaced-scaffold na na NIFY01000161.1 <> na Primary Assembly 31015 na U_155 unplaced-scaffold na na NIFY01000162.1 <> na Primary Assembly 65363 na U_156 unplaced-scaffold na na NIFY01000163.1 <> na Primary Assembly 41798 na U_157 unplaced-scaffold na na NIFY01000164.1 <> na Primary Assembly 79239 na U_158 unplaced-scaffold na na NIFY01000165.1 <> na Primary Assembly 47535 na U_159 unplaced-scaffold na na NIFY01000166.1 <> na Primary Assembly 37363 na U_160 unplaced-scaffold na na NIFY01000167.1 <> na Primary Assembly 37486 na U_161 unplaced-scaffold na na NIFY01000168.1 <> na Primary Assembly 39375 na U_162 unplaced-scaffold na na NIFY01000169.1 <> na Primary Assembly 31806 na U_163 unplaced-scaffold na na NIFY01000170.1 <> na Primary Assembly 150572 na U_164 unplaced-scaffold na na NIFY01000171.1 <> na Primary Assembly 140923 na U_165 unplaced-scaffold na na NIFY01000172.1 <> na Primary Assembly 53233 na U_166 unplaced-scaffold na na NIFY01000173.1 <> na Primary Assembly 225461 na U_167 unplaced-scaffold na na NIFY01000174.1 <> na Primary Assembly 52352 na U_168 unplaced-scaffold na na NIFY01000175.1 <> na Primary Assembly 80703 na Y_1 unplaced-scaffold na na NIFY01000176.1 <> na Primary Assembly 66793 na Y_2 unplaced-scaffold na na NIFY01000177.1 <> na Primary Assembly 311464 na Y_3 unplaced-scaffold na na NIFY01000178.1 <> na Primary Assembly 215123 na Y_4 unplaced-scaffold na na NIFY01000179.1 <> na Primary Assembly 241491 na Y_5 unplaced-scaffold na na NIFY01000180.1 <> na Primary Assembly 269259 na Y_6 unplaced-scaffold na na NIFY01000181.1 <> na Primary Assembly 223634 na Y_7 unplaced-scaffold na na NIFY01000182.1 <> na Primary Assembly 222038 na Y_8 unplaced-scaffold na na NIFY01000183.1 <> na Primary Assembly 110743 na Y_9 unplaced-scaffold na na NIFY01000184.1 <> na Primary Assembly 128035 na Y_10 unplaced-scaffold na na NIFY01000185.1 <> na Primary Assembly 139530 na Y_11 unplaced-scaffold na na NIFY01000186.1 <> na Primary Assembly 236599 na Y_12 unplaced-scaffold na na NIFY01000187.1 <> na Primary Assembly 348698 na Y_13 unplaced-scaffold na na NIFY01000188.1 <> na Primary Assembly 113563 na Y_14 unplaced-scaffold na na NIFY01000189.1 <> na Primary Assembly 264367 na Y_15 unplaced-scaffold na na NIFY01000190.1 <> na Primary Assembly 80915 na Y_16 unplaced-scaffold na na NIFY01000191.1 <> na Primary Assembly 110690 na Y_17 unplaced-scaffold na na NIFY01000192.1 <> na Primary Assembly 74734 na Y_18 unplaced-scaffold na na NIFY01000193.1 <> na Primary Assembly 27578 na Y_19 unplaced-scaffold na na NIFY01000194.1 <> na Primary Assembly 73886 na Y_20 unplaced-scaffold na na NIFY01000195.1 <> na Primary Assembly 62489 na Y_21 unplaced-scaffold na na NIFY01000196.1 <> na Primary Assembly 35817 na Y_22 unplaced-scaffold na na NIFY01000197.1 <> na Primary Assembly 246244 na Y_23 unplaced-scaffold na na NIFY01000198.1 <> na Primary Assembly 60190 na Y_24 unplaced-scaffold na na NIFY01000199.1 <> na Primary Assembly 41811 na Y_25 unplaced-scaffold na na NIFY01000200.1 <> na Primary Assembly 153205 na Y_26 unplaced-scaffold na na NIFY01000201.1 <> na Primary Assembly 38305 na Y_27 unplaced-scaffold na na NIFY01000202.1 <> na Primary Assembly 67554 na Y_28 unplaced-scaffold na na NIFY01000203.1 <> na Primary Assembly 57787 na Y_29 unplaced-scaffold na na NIFY01000204.1 <> na Primary Assembly 81120 na Y_30 unplaced-scaffold na na NIFY01000205.1 <> na Primary Assembly 925046 na Y_31 unplaced-scaffold na na NIFY01000206.1 <> na Primary Assembly 58737 na Y_32 unplaced-scaffold na na NIFY01000207.1 <> na Primary Assembly 465752 na Y_33 unplaced-scaffold na na NIFY01000208.1 <> na Primary Assembly 367176 na Y_34 unplaced-scaffold na na NIFY01000209.1 <> na Primary Assembly 403943 na Y_35 unplaced-scaffold na na NIFY01000210.1 <> na Primary Assembly 512629 na Y_36 unplaced-scaffold na na NIFY01000211.1 <> na Primary Assembly 342690 na Y_37 unplaced-scaffold na na NIFY01000212.1 <> na Primary Assembly 1160079 na Y_38 unplaced-scaffold na na NIFY01000213.1 <> na Primary Assembly 303698 na Y_39 unplaced-scaffold na na NIFY01000214.1 <> na Primary Assembly 307302 na Y_40 unplaced-scaffold na na NIFY01000215.1 <> na Primary Assembly 371591 na mitochondrion_genome assembled-molecule MT Mitochondrion CM016414.1 <> na non-nuclear 19143 na