# Assembly name: UCBerk_Dlow_1.0 # Organism name: Drosophila lowei (flies) # Isolate: Jillo6 # Sex: male # Taxid: 7251 # BioSample: SAMN11962598 # BioProject: PRJNA545704 # Submitter: UC Berkeley # Date: 2019-08-28 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: VHIG01 # Assembly method: wtdbg2 v. 2019 # Expected final version: yes # Genome coverage: 50.0x # Sequencing technology: Oxford Nanopore # RefSeq category: Representative Genome # GenBank assembly accession: GCA_008121275.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_008121285.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Chr_2 assembled-molecule 2 Chromosome CM017777.1 <> na Primary Assembly 48132706 na Chr_3 assembled-molecule 3 Chromosome CM017778.1 <> na Primary Assembly 24430087 na Chr_4 assembled-molecule 4 Chromosome CM017779.1 <> na Primary Assembly 31032897 na Chr_5 assembled-molecule 5 Chromosome CM017780.1 <> na Primary Assembly 1606711 na Chr_X assembled-molecule X Chromosome CM017781.1 <> na Primary Assembly 73251623 na Contig_1 unplaced-scaffold na na VHIG01000006.1 <> na Primary Assembly 171134 na Contig_10 unplaced-scaffold na na VHIG01000015.1 <> na Primary Assembly 102691 na Contig_100 unplaced-scaffold na na VHIG01000105.1 <> na Primary Assembly 17312 na Contig_101 unplaced-scaffold na na VHIG01000106.1 <> na Primary Assembly 16005 na Contig_102 unplaced-scaffold na na VHIG01000107.1 <> na Primary Assembly 15184 na Contig_103 unplaced-scaffold na na VHIG01000108.1 <> na Primary Assembly 15145 na Contig_104 unplaced-scaffold na na VHIG01000109.1 <> na Primary Assembly 14883 na Contig_105 unplaced-scaffold na na VHIG01000110.1 <> na Primary Assembly 14838 na Contig_106 unplaced-scaffold na na VHIG01000111.1 <> na Primary Assembly 14833 na Contig_107 unplaced-scaffold na na VHIG01000112.1 <> na Primary Assembly 14818 na Contig_108 unplaced-scaffold na na VHIG01000113.1 <> na Primary Assembly 14811 na Contig_109 unplaced-scaffold na na VHIG01000114.1 <> na Primary Assembly 14796 na Contig_11 unplaced-scaffold na na VHIG01000016.1 <> na Primary Assembly 91214 na Contig_110 unplaced-scaffold na na VHIG01000115.1 <> na Primary Assembly 14770 na Contig_111 unplaced-scaffold na na VHIG01000116.1 <> na Primary Assembly 14634 na Contig_112 unplaced-scaffold na na VHIG01000117.1 <> na Primary Assembly 14427 na Contig_113 unplaced-scaffold na na VHIG01000118.1 <> na Primary Assembly 14357 na Contig_114 unplaced-scaffold na na VHIG01000119.1 <> na Primary Assembly 14345 na Contig_115 unplaced-scaffold na na VHIG01000120.1 <> na Primary Assembly 14308 na Contig_116 unplaced-scaffold na na VHIG01000121.1 <> na Primary Assembly 14258 na Contig_117 unplaced-scaffold na na VHIG01000122.1 <> na Primary Assembly 14254 na Contig_118 unplaced-scaffold na na VHIG01000123.1 <> na Primary Assembly 14177 na Contig_119 unplaced-scaffold na na VHIG01000124.1 <> na Primary Assembly 13991 na Contig_12 unplaced-scaffold na na VHIG01000017.1 <> na Primary Assembly 89392 na Contig_120 unplaced-scaffold na na VHIG01000125.1 <> na Primary Assembly 13948 na Contig_121 unplaced-scaffold na na VHIG01000126.1 <> na Primary Assembly 13926 na Contig_122 unplaced-scaffold na na VHIG01000127.1 <> na Primary Assembly 13828 na Contig_123 unplaced-scaffold na na VHIG01000128.1 <> na Primary Assembly 13783 na Contig_124 unplaced-scaffold na na VHIG01000129.1 <> na Primary Assembly 13643 na Contig_125 unplaced-scaffold na na VHIG01000130.1 <> na Primary Assembly 13478 na Contig_126 unplaced-scaffold na na VHIG01000131.1 <> na Primary Assembly 13460 na Contig_127 unplaced-scaffold na na VHIG01000132.1 <> na Primary Assembly 13454 na Contig_128 unplaced-scaffold na na VHIG01000133.1 <> na Primary Assembly 13407 na Contig_129 unplaced-scaffold na na VHIG01000134.1 <> na Primary Assembly 13366 na Contig_13 unplaced-scaffold na na VHIG01000018.1 <> na Primary Assembly 87060 na Contig_130 unplaced-scaffold na na VHIG01000135.1 <> na Primary Assembly 13315 na Contig_131 unplaced-scaffold na na VHIG01000136.1 <> na Primary Assembly 13211 na Contig_132 unplaced-scaffold na na VHIG01000137.1 <> na Primary Assembly 13061 na Contig_133 unplaced-scaffold na na VHIG01000138.1 <> na Primary Assembly 13000 na Contig_134 unplaced-scaffold na na VHIG01000139.1 <> na Primary Assembly 12868 na Contig_135 unplaced-scaffold na na VHIG01000140.1 <> na Primary Assembly 12822 na Contig_136 unplaced-scaffold na na VHIG01000141.1 <> na Primary Assembly 12725 na Contig_137 unplaced-scaffold na na VHIG01000142.1 <> na Primary Assembly 12633 na Contig_138 unplaced-scaffold na na VHIG01000143.1 <> na Primary Assembly 12595 na Contig_139 unplaced-scaffold na na VHIG01000144.1 <> na Primary Assembly 12446 na Contig_14 unplaced-scaffold na na VHIG01000019.1 <> na Primary Assembly 85002 na Contig_140 unplaced-scaffold na na VHIG01000145.1 <> na Primary Assembly 12285 na Contig_141 unplaced-scaffold na na VHIG01000146.1 <> na Primary Assembly 12265 na Contig_142 unplaced-scaffold na na VHIG01000147.1 <> na Primary Assembly 12113 na Contig_143 unplaced-scaffold na na VHIG01000148.1 <> na Primary Assembly 11868 na Contig_144 unplaced-scaffold na na VHIG01000149.1 <> na Primary Assembly 11686 na Contig_145 unplaced-scaffold na na VHIG01000150.1 <> na Primary Assembly 11632 na Contig_146 unplaced-scaffold na na VHIG01000151.1 <> na Primary Assembly 11626 na Contig_147 unplaced-scaffold na na VHIG01000152.1 <> na Primary Assembly 11490 na Contig_148 unplaced-scaffold na na VHIG01000153.1 <> na Primary Assembly 11335 na Contig_149 unplaced-scaffold na na VHIG01000154.1 <> na Primary Assembly 11220 na Contig_15 unplaced-scaffold na na VHIG01000020.1 <> na Primary Assembly 83217 na Contig_150 unplaced-scaffold na na VHIG01000155.1 <> na Primary Assembly 11199 na Contig_151 unplaced-scaffold na na VHIG01000156.1 <> na Primary Assembly 11138 na Contig_152 unplaced-scaffold na na VHIG01000157.1 <> na Primary Assembly 11073 na Contig_153 unplaced-scaffold na na VHIG01000158.1 <> na Primary Assembly 11071 na Contig_154 unplaced-scaffold na na VHIG01000159.1 <> na Primary Assembly 11064 na Contig_155 unplaced-scaffold na na VHIG01000160.1 <> na Primary Assembly 11060 na Contig_156 unplaced-scaffold na na VHIG01000161.1 <> na Primary Assembly 11023 na Contig_157 unplaced-scaffold na na VHIG01000162.1 <> na Primary Assembly 10823 na Contig_158 unplaced-scaffold na na VHIG01000163.1 <> na Primary Assembly 10816 na Contig_159 unplaced-scaffold na na VHIG01000164.1 <> na Primary Assembly 10743 na Contig_16 unplaced-scaffold na na VHIG01000021.1 <> na Primary Assembly 76853 na Contig_160 unplaced-scaffold na na VHIG01000165.1 <> na Primary Assembly 10707 na Contig_161 unplaced-scaffold na na VHIG01000166.1 <> na Primary Assembly 10699 na Contig_162 unplaced-scaffold na na VHIG01000167.1 <> na Primary Assembly 10657 na Contig_163 unplaced-scaffold na na VHIG01000168.1 <> na Primary Assembly 10339 na Contig_164 unplaced-scaffold na na VHIG01000169.1 <> na Primary Assembly 9932 na Contig_165 unplaced-scaffold na na VHIG01000170.1 <> na Primary Assembly 9780 na Contig_166 unplaced-scaffold na na VHIG01000171.1 <> na Primary Assembly 9544 na Contig_167 unplaced-scaffold na na VHIG01000172.1 <> na Primary Assembly 9522 na Contig_168 unplaced-scaffold na na VHIG01000173.1 <> na Primary Assembly 9455 na Contig_169 unplaced-scaffold na na VHIG01000174.1 <> na Primary Assembly 9451 na Contig_17 unplaced-scaffold na na VHIG01000022.1 <> na Primary Assembly 74933 na Contig_170 unplaced-scaffold na na VHIG01000175.1 <> na Primary Assembly 9420 na Contig_171 unplaced-scaffold na na VHIG01000176.1 <> na Primary Assembly 8974 na Contig_172 unplaced-scaffold na na VHIG01000177.1 <> na Primary Assembly 8726 na Contig_173 unplaced-scaffold na na VHIG01000178.1 <> na Primary Assembly 8357 na Contig_174 unplaced-scaffold na na VHIG01000179.1 <> na Primary Assembly 8315 na Contig_175 unplaced-scaffold na na VHIG01000180.1 <> na Primary Assembly 8312 na Contig_176 unplaced-scaffold na na VHIG01000181.1 <> na Primary Assembly 8162 na Contig_177 unplaced-scaffold na na VHIG01000182.1 <> na Primary Assembly 8145 na Contig_178 unplaced-scaffold na na VHIG01000183.1 <> na Primary Assembly 8143 na Contig_179 unplaced-scaffold na na VHIG01000184.1 <> na Primary Assembly 8133 na Contig_18 unplaced-scaffold na na VHIG01000023.1 <> na Primary Assembly 69751 na Contig_180 unplaced-scaffold na na VHIG01000185.1 <> na Primary Assembly 7979 na Contig_181 unplaced-scaffold na na VHIG01000186.1 <> na Primary Assembly 7787 na Contig_182 unplaced-scaffold na na VHIG01000187.1 <> na Primary Assembly 7749 na Contig_183 unplaced-scaffold na na VHIG01000188.1 <> na Primary Assembly 7498 na Contig_184 unplaced-scaffold na na VHIG01000189.1 <> na Primary Assembly 7340 na Contig_185 unplaced-scaffold na na VHIG01000190.1 <> na Primary Assembly 7313 na Contig_186 unplaced-scaffold na na VHIG01000191.1 <> na Primary Assembly 6997 na Contig_187 unplaced-scaffold na na VHIG01000192.1 <> na Primary Assembly 6922 na Contig_188 unplaced-scaffold na na VHIG01000193.1 <> na Primary Assembly 6836 na Contig_189 unplaced-scaffold na na VHIG01000194.1 <> na Primary Assembly 6807 na Contig_19 unplaced-scaffold na na VHIG01000024.1 <> na Primary Assembly 69396 na Contig_190 unplaced-scaffold na na VHIG01000195.1 <> na Primary Assembly 6793 na Contig_191 unplaced-scaffold na na VHIG01000196.1 <> na Primary Assembly 6740 na Contig_192 unplaced-scaffold na na VHIG01000197.1 <> na Primary Assembly 6706 na Contig_193 unplaced-scaffold na na VHIG01000198.1 <> na Primary Assembly 6502 na Contig_194 unplaced-scaffold na na VHIG01000199.1 <> na Primary Assembly 6463 na Contig_195 unplaced-scaffold na na VHIG01000200.1 <> na Primary Assembly 6379 na Contig_196 unplaced-scaffold na na VHIG01000201.1 <> na Primary Assembly 6369 na Contig_197 unplaced-scaffold na na VHIG01000202.1 <> na Primary Assembly 6117 na Contig_198 unplaced-scaffold na na VHIG01000203.1 <> na Primary Assembly 6089 na Contig_199 unplaced-scaffold na na VHIG01000204.1 <> na Primary Assembly 6064 na Contig_2 unplaced-scaffold na na VHIG01000007.1 <> na Primary Assembly 124033 na Contig_20 unplaced-scaffold na na VHIG01000025.1 <> na Primary Assembly 68287 na Contig_200 unplaced-scaffold na na VHIG01000205.1 <> na Primary Assembly 6032 na Contig_201 unplaced-scaffold na na VHIG01000206.1 <> na Primary Assembly 5799 na Contig_202 unplaced-scaffold na na VHIG01000207.1 <> na Primary Assembly 5793 na Contig_203 unplaced-scaffold na na VHIG01000208.1 <> na Primary Assembly 5691 na Contig_204 unplaced-scaffold na na VHIG01000209.1 <> na Primary Assembly 5617 na Contig_205 unplaced-scaffold na na VHIG01000210.1 <> na Primary Assembly 5501 na Contig_206 unplaced-scaffold na na VHIG01000211.1 <> na Primary Assembly 5451 na Contig_207 unplaced-scaffold na na VHIG01000212.1 <> na Primary Assembly 5427 na Contig_208 unplaced-scaffold na na VHIG01000213.1 <> na Primary Assembly 5422 na Contig_209 unplaced-scaffold na na VHIG01000214.1 <> na Primary Assembly 5405 na Contig_21 unplaced-scaffold na na VHIG01000026.1 <> na Primary Assembly 67213 na Contig_210 unplaced-scaffold na na VHIG01000215.1 <> na Primary Assembly 5378 na Contig_211 unplaced-scaffold na na VHIG01000216.1 <> na Primary Assembly 5361 na Contig_212 unplaced-scaffold na na VHIG01000217.1 <> na Primary Assembly 5352 na Contig_213 unplaced-scaffold na na VHIG01000218.1 <> na Primary Assembly 5340 na Contig_214 unplaced-scaffold na na VHIG01000219.1 <> na Primary Assembly 5208 na Contig_215 unplaced-scaffold na na VHIG01000220.1 <> na Primary Assembly 5167 na Contig_216 unplaced-scaffold na na VHIG01000221.1 <> na Primary Assembly 4969 na Contig_217 unplaced-scaffold na na VHIG01000222.1 <> na Primary Assembly 4802 na Contig_218 unplaced-scaffold na na VHIG01000223.1 <> na Primary Assembly 4016 na Contig_22 unplaced-scaffold na na VHIG01000027.1 <> na Primary Assembly 66843 na Contig_23 unplaced-scaffold na na VHIG01000028.1 <> na Primary Assembly 63443 na Contig_24 unplaced-scaffold na na VHIG01000029.1 <> na Primary Assembly 60624 na Contig_25 unplaced-scaffold na na VHIG01000030.1 <> na Primary Assembly 59890 na Contig_26 unplaced-scaffold na na VHIG01000031.1 <> na Primary Assembly 57287 na Contig_27 unplaced-scaffold na na VHIG01000032.1 <> na Primary Assembly 55956 na Contig_28 unplaced-scaffold na na VHIG01000033.1 <> na Primary Assembly 55794 na Contig_29 unplaced-scaffold na na VHIG01000034.1 <> na Primary Assembly 55109 na Contig_3 unplaced-scaffold na na VHIG01000008.1 <> na Primary Assembly 111538 na Contig_30 unplaced-scaffold na na VHIG01000035.1 <> na Primary Assembly 53234 na Contig_31 unplaced-scaffold na na VHIG01000036.1 <> na Primary Assembly 52757 na Contig_32 unplaced-scaffold na na VHIG01000037.1 <> na Primary Assembly 52136 na Contig_33 unplaced-scaffold na na VHIG01000038.1 <> na Primary Assembly 50304 na Contig_34 unplaced-scaffold na na VHIG01000039.1 <> na Primary Assembly 49926 na Contig_35 unplaced-scaffold na na VHIG01000040.1 <> na Primary Assembly 48777 na Contig_36 unplaced-scaffold na na VHIG01000041.1 <> na Primary Assembly 48473 na Contig_37 unplaced-scaffold na na VHIG01000042.1 <> na Primary Assembly 48427 na Contig_38 unplaced-scaffold na na VHIG01000043.1 <> na Primary Assembly 46954 na Contig_39 unplaced-scaffold na na VHIG01000044.1 <> na Primary Assembly 45175 na Contig_4 unplaced-scaffold na na VHIG01000009.1 <> na Primary Assembly 109731 na Contig_40 unplaced-scaffold na na VHIG01000045.1 <> na Primary Assembly 42608 na Contig_41 unplaced-scaffold na na VHIG01000046.1 <> na Primary Assembly 42307 na Contig_42 unplaced-scaffold na na VHIG01000047.1 <> na Primary Assembly 42038 na Contig_43 unplaced-scaffold na na VHIG01000048.1 <> na Primary Assembly 41550 na Contig_44 unplaced-scaffold na na VHIG01000049.1 <> na Primary Assembly 41235 na Contig_45 unplaced-scaffold na na VHIG01000050.1 <> na Primary Assembly 40304 na Contig_46 unplaced-scaffold na na VHIG01000051.1 <> na Primary Assembly 40097 na Contig_47 unplaced-scaffold na na VHIG01000052.1 <> na Primary Assembly 37598 na Contig_48 unplaced-scaffold na na VHIG01000053.1 <> na Primary Assembly 37424 na Contig_49 unplaced-scaffold na na VHIG01000054.1 <> na Primary Assembly 37239 na Contig_5 unplaced-scaffold na na VHIG01000010.1 <> na Primary Assembly 109260 na Contig_50 unplaced-scaffold na na VHIG01000055.1 <> na Primary Assembly 34659 na Contig_51 unplaced-scaffold na na VHIG01000056.1 <> na Primary Assembly 34568 na Contig_52 unplaced-scaffold na na VHIG01000057.1 <> na Primary Assembly 33373 na Contig_53 unplaced-scaffold na na VHIG01000058.1 <> na Primary Assembly 32814 na Contig_54 unplaced-scaffold na na VHIG01000059.1 <> na Primary Assembly 32073 na Contig_55 unplaced-scaffold na na VHIG01000060.1 <> na Primary Assembly 31834 na Contig_56 unplaced-scaffold na na VHIG01000061.1 <> na Primary Assembly 30653 na Contig_57 unplaced-scaffold na na VHIG01000062.1 <> na Primary Assembly 30396 na Contig_58 unplaced-scaffold na na VHIG01000063.1 <> na Primary Assembly 30262 na Contig_59 unplaced-scaffold na na VHIG01000064.1 <> na Primary Assembly 29858 na Contig_6 unplaced-scaffold na na VHIG01000011.1 <> na Primary Assembly 106700 na Contig_60 unplaced-scaffold na na VHIG01000065.1 <> na Primary Assembly 29772 na Contig_61 unplaced-scaffold na na VHIG01000066.1 <> na Primary Assembly 29619 na Contig_62 unplaced-scaffold na na VHIG01000067.1 <> na Primary Assembly 29521 na Contig_63 unplaced-scaffold na na VHIG01000068.1 <> na Primary Assembly 28792 na Contig_64 unplaced-scaffold na na VHIG01000069.1 <> na Primary Assembly 28529 na Contig_65 unplaced-scaffold na na VHIG01000070.1 <> na Primary Assembly 28280 na Contig_66 unplaced-scaffold na na VHIG01000071.1 <> na Primary Assembly 28073 na Contig_67 unplaced-scaffold na na VHIG01000072.1 <> na Primary Assembly 27309 na Contig_68 unplaced-scaffold na na VHIG01000073.1 <> na Primary Assembly 27058 na Contig_69 unplaced-scaffold na na VHIG01000074.1 <> na Primary Assembly 26935 na Contig_7 unplaced-scaffold na na VHIG01000012.1 <> na Primary Assembly 105469 na Contig_70 unplaced-scaffold na na VHIG01000075.1 <> na Primary Assembly 26835 na Contig_71 unplaced-scaffold na na VHIG01000076.1 <> na Primary Assembly 26366 na Contig_72 unplaced-scaffold na na VHIG01000077.1 <> na Primary Assembly 26159 na Contig_73 unplaced-scaffold na na VHIG01000078.1 <> na Primary Assembly 25630 na Contig_74 unplaced-scaffold na na VHIG01000079.1 <> na Primary Assembly 25610 na Contig_75 unplaced-scaffold na na VHIG01000080.1 <> na Primary Assembly 25268 na Contig_76 unplaced-scaffold na na VHIG01000081.1 <> na Primary Assembly 24589 na Contig_77 unplaced-scaffold na na VHIG01000082.1 <> na Primary Assembly 24448 na Contig_78 unplaced-scaffold na na VHIG01000083.1 <> na Primary Assembly 22956 na Contig_79 unplaced-scaffold na na VHIG01000084.1 <> na Primary Assembly 22882 na Contig_8 unplaced-scaffold na na VHIG01000013.1 <> na Primary Assembly 104935 na Contig_80 unplaced-scaffold na na VHIG01000085.1 <> na Primary Assembly 22851 na Contig_81 unplaced-scaffold na na VHIG01000086.1 <> na Primary Assembly 22335 na Contig_82 unplaced-scaffold na na VHIG01000087.1 <> na Primary Assembly 22240 na Contig_83 unplaced-scaffold na na VHIG01000088.1 <> na Primary Assembly 21984 na Contig_84 unplaced-scaffold na na VHIG01000089.1 <> na Primary Assembly 21921 na Contig_85 unplaced-scaffold na na VHIG01000090.1 <> na Primary Assembly 21836 na Contig_86 unplaced-scaffold na na VHIG01000091.1 <> na Primary Assembly 20665 na Contig_87 unplaced-scaffold na na VHIG01000092.1 <> na Primary Assembly 20597 na Contig_88 unplaced-scaffold na na VHIG01000093.1 <> na Primary Assembly 20346 na Contig_89 unplaced-scaffold na na VHIG01000094.1 <> na Primary Assembly 20340 na Contig_9 unplaced-scaffold na na VHIG01000014.1 <> na Primary Assembly 104050 na Contig_90 unplaced-scaffold na na VHIG01000095.1 <> na Primary Assembly 20301 na Contig_91 unplaced-scaffold na na VHIG01000096.1 <> na Primary Assembly 19771 na Contig_92 unplaced-scaffold na na VHIG01000097.1 <> na Primary Assembly 19464 na Contig_93 unplaced-scaffold na na VHIG01000098.1 <> na Primary Assembly 19337 na Contig_94 unplaced-scaffold na na VHIG01000099.1 <> na Primary Assembly 19315 na Contig_95 unplaced-scaffold na na VHIG01000100.1 <> na Primary Assembly 19242 na Contig_96 unplaced-scaffold na na VHIG01000101.1 <> na Primary Assembly 19038 na Contig_97 unplaced-scaffold na na VHIG01000102.1 <> na Primary Assembly 18760 na Contig_98 unplaced-scaffold na na VHIG01000103.1 <> na Primary Assembly 18252 na Contig_99 unplaced-scaffold na na VHIG01000104.1 <> na Primary Assembly 17787 na