# Assembly name: bAlcTor1 primary # Organism name: Alca torda (razorbill) # Isolate: 2006_11_07_Graehlm_vinge_78 # Sex: male # Taxid: 28689 # BioSample: SAMN12292087 # BioProject: PRJNA554520 # Submitter: G10K # Date: 2019-10-10 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: VMED01 # Assembly method: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; purge_haplotigs v. bitbucket 7.10.2018; scaff10x v. 2.1; Bionano 2 enzyme v. 3.2.1; Salsa2 v. 2.2; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-06-18; VGP standard assembly pipeline v. 1.5 # Expected final version: no # Genome coverage: 64.69x # Sequencing technology: PacBio Sequel; Illumina NovaSeq; 10X Genome; Arima Hi-C # RefSeq category: Representative Genome # GenBank assembly accession: GCA_008658365.1 # Linked assembly: GCA_008658355.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_008658405.1 Primary Assembly ## GCA_008658415.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name super_scaffold_1 assembled-molecule 1 Chromosome CM018076.1 <> na Primary Assembly 215872496 na super_scaffold_2 assembled-molecule 2 Chromosome CM018077.1 <> na Primary Assembly 165051286 na scaffold_2_arrow_ctg1 assembled-molecule 3 Chromosome CM018078.1 <> na Primary Assembly 125510139 na scaffold_5_arrow_ctg1 assembled-molecule 4 Chromosome CM018079.1 <> na Primary Assembly 82438829 na super_scaffold_5 assembled-molecule 5 Chromosome CM018080.1 <> na Primary Assembly 70992871 na super_scaffold_9 assembled-molecule 6 Chromosome CM018081.1 <> na Primary Assembly 52539765 na scaffold_10_arrow_ctg1 assembled-molecule 7 Chromosome CM018082.1 <> na Primary Assembly 47750090 na super_scaffold_10 assembled-molecule 8 Chromosome CM018083.1 <> na Primary Assembly 43861690 na scaffold_11_arrow_ctg1 assembled-molecule 9 Chromosome CM018084.1 <> na Primary Assembly 43770548 na scaffold_13_arrow_ctg1 assembled-molecule 10 Chromosome CM018085.1 <> na Primary Assembly 41489931 na super_scaffold_12 assembled-molecule 11 Chromosome CM018086.1 <> na Primary Assembly 38974675 na scaffold_14_arrow_ctg1 assembled-molecule 12 Chromosome CM018087.1 <> na Primary Assembly 35546317 na scaffold_15_arrow_ctg1 assembled-molecule 13 Chromosome CM018088.1 <> na Primary Assembly 34322904 na scaffold_16_arrow_ctg1 assembled-molecule 14 Chromosome CM018089.1 <> na Primary Assembly 13223547 na scaffold_16_arrow_ctg2 assembled-molecule 15 Chromosome CM018090.1 <> na Primary Assembly 13149485 na super_scaffold_21 assembled-molecule 16 Chromosome CM018091.1 <> na Primary Assembly 9767604 na scaffold_20_arrow_ctg1 assembled-molecule 17 Chromosome CM018092.1 <> na Primary Assembly 8686195 na scaffold_21_arrow_ctg1 assembled-molecule 18 Chromosome CM018093.1 <> na Primary Assembly 8379326 na scaffold_22_arrow_ctg1 assembled-molecule 19 Chromosome CM018094.1 <> na Primary Assembly 8133896 na scaffold_23_arrow_ctg1 assembled-molecule 20 Chromosome CM018095.1 <> na Primary Assembly 7777642 na scaffold_25_arrow_ctg1 assembled-molecule 21 Chromosome CM018096.1 <> na Primary Assembly 7118070 na scaffold_27_arrow_ctg1 assembled-molecule 22 Chromosome CM018097.1 <> na Primary Assembly 6270964 na super_scaffold_25 assembled-molecule 23 Chromosome CM018098.1 <> na Primary Assembly 3233901 na scaffold_29_arrow_ctg1 assembled-molecule 24 Chromosome CM018099.1 <> na Primary Assembly 2563298 na super_scaffold_30 assembled-molecule 25 Chromosome CM018100.1 <> na Primary Assembly 926252 na super_scaffold_Z assembled-molecule Z Chromosome CM018101.1 <> na Primary Assembly 84526827 na scaffold_100_arrow_ctg1 unplaced-scaffold na na VMED01000001.1 <> na Primary Assembly 29829 na scaffold_101_arrow_ctg1 unplaced-scaffold na na VMED01000002.1 <> na Primary Assembly 29808 na scaffold_102_arrow_ctg1 unplaced-scaffold na na VMED01000003.1 <> na Primary Assembly 28782 na scaffold_103_arrow_ctg1 unplaced-scaffold na na VMED01000004.1 <> na Primary Assembly 27584 na scaffold_104_arrow_ctg1 unplaced-scaffold na na VMED01000005.1 <> na Primary Assembly 27050 na scaffold_105_arrow_ctg1 unplaced-scaffold na na VMED01000006.1 <> na Primary Assembly 26503 na scaffold_106_arrow_ctg1 unplaced-scaffold na na VMED01000007.1 <> na Primary Assembly 26219 na scaffold_107_arrow_ctg1 unplaced-scaffold na na VMED01000008.1 <> na Primary Assembly 24079 na scaffold_108_arrow_ctg1 unplaced-scaffold na na VMED01000009.1 <> na Primary Assembly 23664 na scaffold_109_arrow_ctg1 unplaced-scaffold na na VMED01000010.1 <> na Primary Assembly 23792 na scaffold_110_arrow_ctg1 unplaced-scaffold na na VMED01000012.1 <> na Primary Assembly 23552 na scaffold_111_arrow_ctg1 unplaced-scaffold na na VMED01000013.1 <> na Primary Assembly 23542 na scaffold_112_arrow_ctg1 unplaced-scaffold na na VMED01000014.1 <> na Primary Assembly 23190 na scaffold_113_arrow_ctg1 unplaced-scaffold na na VMED01000015.1 <> na Primary Assembly 21909 na scaffold_114_arrow_ctg1 unplaced-scaffold na na VMED01000016.1 <> na Primary Assembly 21224 na scaffold_115_arrow_ctg1 unplaced-scaffold na na VMED01000017.1 <> na Primary Assembly 21152 na scaffold_116_arrow_ctg1 unplaced-scaffold na na VMED01000018.1 <> na Primary Assembly 20910 na scaffold_117_arrow_ctg1 unplaced-scaffold na na VMED01000019.1 <> na Primary Assembly 17254 na scaffold_118_arrow_ctg1 unplaced-scaffold na na VMED01000020.1 <> na Primary Assembly 13591 na scaffold_28_arrow_ctg1 unplaced-scaffold na na VMED01000038.1 <> na Primary Assembly 620301 na scaffold_38_arrow_ctg1 unplaced-scaffold na na VMED01000042.1 <> na Primary Assembly 681565 na scaffold_41_arrow_ctg1 unplaced-scaffold na na VMED01000044.1 <> na Primary Assembly 389001 na scaffold_43_arrow_ctg1 unplaced-scaffold na na VMED01000045.1 <> na Primary Assembly 372064 na scaffold_48_arrow_ctg1 unplaced-scaffold na na VMED01000046.1 <> na Primary Assembly 248262 na scaffold_49_arrow_ctg1 unplaced-scaffold na na VMED01000047.1 <> na Primary Assembly 242906 na scaffold_50_arrow_ctg1 unplaced-scaffold na na VMED01000049.1 <> na Primary Assembly 232881 na scaffold_51_arrow_ctg1 unplaced-scaffold na na VMED01000050.1 <> na Primary Assembly 204694 na scaffold_54_arrow_ctg1 unplaced-scaffold na na VMED01000051.1 <> na Primary Assembly 175398 na scaffold_53_arrow_ctg1 unplaced-scaffold na na VMED01000052.1 <> na Primary Assembly 371044 na scaffold_56_arrow_ctg1 unplaced-scaffold na na VMED01000053.1 <> na Primary Assembly 169980 na scaffold_57_arrow_ctg1 unplaced-scaffold na na VMED01000054.1 <> na Primary Assembly 171058 na scaffold_58_arrow_ctg1 unplaced-scaffold na na VMED01000055.1 <> na Primary Assembly 155136 na scaffold_59_arrow_ctg1 unplaced-scaffold na na VMED01000056.1 <> na Primary Assembly 138063 na scaffold_60_arrow_ctg1 unplaced-scaffold na na VMED01000058.1 <> na Primary Assembly 134328 na scaffold_62_arrow_ctg1 unplaced-scaffold na na VMED01000059.1 <> na Primary Assembly 113834 na scaffold_63_arrow_ctg1 unplaced-scaffold na na VMED01000060.1 <> na Primary Assembly 114039 na scaffold_64_arrow_ctg1 unplaced-scaffold na na VMED01000061.1 <> na Primary Assembly 111398 na scaffold_65_arrow_ctg1 unplaced-scaffold na na VMED01000062.1 <> na Primary Assembly 98712 na scaffold_66_arrow_ctg1 unplaced-scaffold na na VMED01000063.1 <> na Primary Assembly 95664 na scaffold_70_arrow_ctg1 unplaced-scaffold na na VMED01000064.1 <> na Primary Assembly 72089 na scaffold_71_arrow_ctg1 unplaced-scaffold na na VMED01000065.1 <> na Primary Assembly 68996 na scaffold_72_arrow_ctg1 unplaced-scaffold na na VMED01000066.1 <> na Primary Assembly 66200 na scaffold_73_arrow_ctg1 unplaced-scaffold na na VMED01000067.1 <> na Primary Assembly 62286 na scaffold_74_arrow_ctg1 unplaced-scaffold na na VMED01000068.1 <> na Primary Assembly 62646 na scaffold_75_arrow_ctg1 unplaced-scaffold na na VMED01000069.1 <> na Primary Assembly 58845 na scaffold_76_arrow_ctg1 unplaced-scaffold na na VMED01000070.1 <> na Primary Assembly 55054 na scaffold_77_arrow_ctg1 unplaced-scaffold na na VMED01000071.1 <> na Primary Assembly 52737 na scaffold_78_arrow_ctg1 unplaced-scaffold na na VMED01000072.1 <> na Primary Assembly 50855 na scaffold_79_arrow_ctg1 unplaced-scaffold na na VMED01000073.1 <> na Primary Assembly 50876 na scaffold_80_arrow_ctg1 unplaced-scaffold na na VMED01000074.1 <> na Primary Assembly 47039 na scaffold_81_arrow_ctg1 unplaced-scaffold na na VMED01000075.1 <> na Primary Assembly 46150 na scaffold_82_arrow_ctg1 unplaced-scaffold na na VMED01000076.1 <> na Primary Assembly 46045 na scaffold_84_arrow_ctg1 unplaced-scaffold na na VMED01000077.1 <> na Primary Assembly 41702 na scaffold_85_arrow_ctg1 unplaced-scaffold na na VMED01000078.1 <> na Primary Assembly 39470 na scaffold_86_arrow_ctg1 unplaced-scaffold na na VMED01000079.1 <> na Primary Assembly 37803 na scaffold_87_arrow_ctg1 unplaced-scaffold na na VMED01000080.1 <> na Primary Assembly 37711 na scaffold_88_arrow_ctg1 unplaced-scaffold na na VMED01000081.1 <> na Primary Assembly 37134 na scaffold_89_arrow_ctg1 unplaced-scaffold na na VMED01000082.1 <> na Primary Assembly 37193 na scaffold_90_arrow_ctg1 unplaced-scaffold na na VMED01000084.1 <> na Primary Assembly 36279 na scaffold_91_arrow_ctg1 unplaced-scaffold na na VMED01000085.1 <> na Primary Assembly 36043 na scaffold_92_arrow_ctg1 unplaced-scaffold na na VMED01000086.1 <> na Primary Assembly 35211 na scaffold_93_arrow_ctg1 unplaced-scaffold na na VMED01000087.1 <> na Primary Assembly 33773 na scaffold_94_arrow_ctg1 unplaced-scaffold na na VMED01000088.1 <> na Primary Assembly 33046 na scaffold_95_arrow_ctg1 unplaced-scaffold na na VMED01000089.1 <> na Primary Assembly 32476 na scaffold_96_arrow_ctg1 unplaced-scaffold na na VMED01000090.1 <> na Primary Assembly 31420 na scaffold_97_arrow_ctg1 unplaced-scaffold na na VMED01000091.1 <> na Primary Assembly 31178 na scaffold_98_arrow_ctg1 unplaced-scaffold na na VMED01000092.1 <> na Primary Assembly 30897 na scaffold_99_arrow_ctg1 unplaced-scaffold na na VMED01000093.1 <> na Primary Assembly 29794 na bAlcTor1_MT assembled-molecule MT Mitochondrion CM018102.1 <> na non-nuclear 19110 na