# Assembly name: bTaeGut2.mat.v3 # Organism name: Taeniopygia guttata (zebra finch) # Isolate: Blue55 # Sex: female # Taxid: 59729 # BioSample: SAMN09946140 # BioProject: PRJNA489100 # Submitter: Vertebrate Genomes Project # Date: 2020-02-21 # Assembly type: haploid (maternal haplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: VOHG03 # Assembly method: TrioCanu v. 1.7; Scaff10x v. 2.1 git 4.28.2018; Bionano Solve 2 enzyme v. 3.2.1; Salsa v. 2.2; Arrow v. 5.1.0.26412; gEVAL manual curation v. 2019-11-08; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; VGP Trio binning assembly pipeline v. 1.0 # Expected final version: no # Genome coverage: 82.5x # Sequencing technology: PacBio Sequel I; 10X Genomics chromium; Bionano Genomics 2 enzyme; Arima Genomics Hi-C; Illumina HiSeq # GenBank assembly accession: GCA_008822115.3 # Linked assembly: GCA_008822125.1 (paternal haplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_008822135.3 Primary Assembly ## GCA_008822175.3 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name mat_1 assembled-molecule 1 Chromosome CM018802.2 <> na Primary Assembly 114616046 na mat_1A assembled-molecule 1A Chromosome CM018261.2 <> na Primary Assembly 71673800 na mat_2 assembled-molecule 2 Chromosome CM018262.2 <> na Primary Assembly 151424995 na mat_3 assembled-molecule 3 Chromosome CM018263.2 <> na Primary Assembly 111831512 na mat_4 assembled-molecule 4 Chromosome CM018264.2 <> na Primary Assembly 73152851 na mat_4A assembled-molecule 4A Chromosome CM018265.2 <> na Primary Assembly 19524936 na mat_5 assembled-molecule 5 Chromosome CM018266.2 <> na Primary Assembly 61327875 na mat_6 assembled-molecule 6 Chromosome CM018267.2 <> na Primary Assembly 36710139 na mat_7 assembled-molecule 7 Chromosome CM018268.2 <> na Primary Assembly 38288255 na mat_8 assembled-molecule 8 Chromosome CM018269.2 <> na Primary Assembly 31861879 na mat_9 assembled-molecule 9 Chromosome CM018270.2 <> na Primary Assembly 25783510 na mat_10 assembled-molecule 10 Chromosome CM018271.2 <> na Primary Assembly 20649852 na mat_11 assembled-molecule 11 Chromosome CM018272.2 <> na Primary Assembly 21261755 na mat_12 assembled-molecule 12 Chromosome CM018273.2 <> na Primary Assembly 20544713 na mat_13 assembled-molecule 13 Chromosome CM018274.2 <> na Primary Assembly 18114727 na mat_14 assembled-molecule 14 Chromosome CM018275.2 <> na Primary Assembly 16388602 na mat_15 assembled-molecule 15 Chromosome CM018276.2 <> na Primary Assembly 13776899 na mat_17 assembled-molecule 17 Chromosome CM018277.2 <> na Primary Assembly 11445910 na mat_18 assembled-molecule 18 Chromosome CM018278.2 <> na Primary Assembly 11174283 na mat_19 assembled-molecule 19 Chromosome CM018803.2 <> na Primary Assembly 11254848 na mat_20 assembled-molecule 20 Chromosome CM018279.2 <> na Primary Assembly 14884734 na mat_21 assembled-molecule 21 Chromosome CM018280.2 <> na Primary Assembly 8020974 na mat_22 assembled-molecule 22 Chromosome CM018804.2 <> na Primary Assembly 3054495 na mat_23 assembled-molecule 23 Chromosome CM018281.2 <> na Primary Assembly 6899930 na mat_24 assembled-molecule 24 Chromosome CM018282.2 <> na Primary Assembly 7613217 na mat_25 assembled-molecule 25 Chromosome CM018283.2 <> na Primary Assembly 4191239 na mat_26 assembled-molecule 26 Chromosome CM018284.2 <> na Primary Assembly 6849560 na mat_27 assembled-molecule 27 Chromosome CM018285.2 <> na Primary Assembly 5307089 na mat_28 assembled-molecule 28 Chromosome CM018286.2 <> na Primary Assembly 6385516 na mat_W assembled-molecule W Chromosome CM018287.2 <> na Primary Assembly 20846394 na mat_29 assembled-molecule 29 Chromosome CM018805.2 <> na Primary Assembly 2007914 na mat_19_unloc unlocalized-scaffold 19 Chromosome VOHG03000032.1 <> na Primary Assembly 2665461 na mat_22_unloc unlocalized-scaffold 22 Chromosome VOHG03000037.1 <> na Primary Assembly 1056902 na mat_W_PAR unlocalized-scaffold W Chromosome VOHG03000042.1 <> na Primary Assembly 551127 na mat_29_unloc unlocalized-scaffold 29 Chromosome VOHG03000049.1 <> na Primary Assembly 384569 na mat_random_6 unplaced-scaffold na na VOHG03000028.1 <> na Primary Assembly 6274136 na mat_random_24 unplaced-scaffold na na VOHG03000034.1 <> na Primary Assembly 1507577 na mat_random_27 unplaced-scaffold na na VOHG03000035.1 <> na Primary Assembly 1272407 na mat_random_28 unplaced-scaffold na na VOHG03000036.1 <> na Primary Assembly 1152641 na mat_random_11 unplaced-scaffold na na VOHG03000038.1 <> na Primary Assembly 806851 na mat_random_31 unplaced-scaffold na na VOHG03000039.1 <> na Primary Assembly 806691 na mat_random_35 unplaced-scaffold na na VOHG03000040.1 <> na Primary Assembly 781538 na mat_random_39 unplaced-scaffold na na VOHG03000041.1 <> na Primary Assembly 663726 na mat_random_42 unplaced-scaffold na na VOHG03000043.1 <> na Primary Assembly 477987 na mat_random_43 unplaced-scaffold na na VOHG03000044.1 <> na Primary Assembly 469962 na mat_random_44 unplaced-scaffold na na VOHG03000045.1 <> na Primary Assembly 438618 na mat_random_46 unplaced-scaffold na na VOHG03000046.1 <> na Primary Assembly 416761 na mat_random_47 unplaced-scaffold na na VOHG03000047.1 <> na Primary Assembly 405312 na mat_random_48 unplaced-scaffold na na VOHG03000048.1 <> na Primary Assembly 395605 na mat_random_49 unplaced-scaffold na na VOHG03000050.1 <> na Primary Assembly 366806 na mat_random_50 unplaced-scaffold na na VOHG03000051.1 <> na Primary Assembly 348783 na mat_random_51 unplaced-scaffold na na VOHG03000052.1 <> na Primary Assembly 345097 na mat_random_52 unplaced-scaffold na na VOHG03000053.1 <> na Primary Assembly 343756 na mat_random_58 unplaced-scaffold na na VOHG03000054.1 <> na Primary Assembly 247930 na mat_random_59 unplaced-scaffold na na VOHG03000055.1 <> na Primary Assembly 243114 na mat_random_61 unplaced-scaffold na na VOHG03000056.1 <> na Primary Assembly 218134 na mat_random_62 unplaced-scaffold na na VOHG03000057.1 <> na Primary Assembly 215296 na mat_random_65 unplaced-scaffold na na VOHG03000058.1 <> na Primary Assembly 184741 na mat_random_67 unplaced-scaffold na na VOHG03000059.1 <> na Primary Assembly 162456 na mat_random_68 unplaced-scaffold na na VOHG03000060.1 <> na Primary Assembly 157968 na mat_random_70 unplaced-scaffold na na VOHG03000061.1 <> na Primary Assembly 152668 na mat_random_74 unplaced-scaffold na na VOHG03000062.1 <> na Primary Assembly 139346 na mat_random_77 unplaced-scaffold na na VOHG03000063.1 <> na Primary Assembly 134077 na mat_random_80 unplaced-scaffold na na VOHG03000064.1 <> na Primary Assembly 123526 na mat_random_81 unplaced-scaffold na na VOHG03000065.1 <> na Primary Assembly 117365 na mat_random_85 unplaced-scaffold na na VOHG03000066.1 <> na Primary Assembly 102790 na mat_random_86 unplaced-scaffold na na VOHG03000067.1 <> na Primary Assembly 102032 na mat_random_98 unplaced-scaffold na na VOHG03000068.1 <> na Primary Assembly 91549 na mat_random_104 unplaced-scaffold na na VOHG03000069.1 <> na Primary Assembly 88722 na mat_random_105 unplaced-scaffold na na VOHG03000070.1 <> na Primary Assembly 88550 na mat_random_109 unplaced-scaffold na na VOHG03000071.1 <> na Primary Assembly 86697 na mat_random_110 unplaced-scaffold na na VOHG03000072.1 <> na Primary Assembly 86483 na mat_random_116 unplaced-scaffold na na VOHG03000073.1 <> na Primary Assembly 80366 na mat_random_120 unplaced-scaffold na na VOHG03000074.1 <> na Primary Assembly 79180 na mat_random_121 unplaced-scaffold na na VOHG03000075.1 <> na Primary Assembly 78261 na mat_random_128 unplaced-scaffold na na VOHG03000076.1 <> na Primary Assembly 73925 na mat_random_129 unplaced-scaffold na na VOHG03000077.1 <> na Primary Assembly 73769 na mat_random_133 unplaced-scaffold na na VOHG03000078.1 <> na Primary Assembly 72279 na mat_random_137 unplaced-scaffold na na VOHG03000079.1 <> na Primary Assembly 69259 na mat_random_141 unplaced-scaffold na na VOHG03000080.1 <> na Primary Assembly 67201 na mat_random_142 unplaced-scaffold na na VOHG03000081.1 <> na Primary Assembly 66896 na mat_random_144 unplaced-scaffold na na VOHG03000082.1 <> na Primary Assembly 66154 na mat_random_145 unplaced-scaffold na na VOHG03000083.1 <> na Primary Assembly 66132 na mat_random_153 unplaced-scaffold na na VOHG03000084.1 <> na Primary Assembly 63302 na mat_random_159 unplaced-scaffold na na VOHG03000085.1 <> na Primary Assembly 61286 na mat_random_165 unplaced-scaffold na na VOHG03000086.1 <> na Primary Assembly 60706 na mat_random_166 unplaced-scaffold na na VOHG03000087.1 <> na Primary Assembly 59607 na mat_random_168 unplaced-scaffold na na VOHG03000088.1 <> na Primary Assembly 59259 na mat_random_169 unplaced-scaffold na na VOHG03000089.1 <> na Primary Assembly 59244 na mat_random_170 unplaced-scaffold na na VOHG03000090.1 <> na Primary Assembly 59014 na mat_random_171 unplaced-scaffold na na VOHG03000091.1 <> na Primary Assembly 58770 na mat_random_173 unplaced-scaffold na na VOHG03000092.1 <> na Primary Assembly 58309 na mat_random_178 unplaced-scaffold na na VOHG03000093.1 <> na Primary Assembly 56695 na mat_random_182 unplaced-scaffold na na VOHG03000094.1 <> na Primary Assembly 56100 na mat_random_184 unplaced-scaffold na na VOHG03000095.1 <> na Primary Assembly 55814 na mat_random_188 unplaced-scaffold na na VOHG03000096.1 <> na Primary Assembly 55439 na mat_random_190 unplaced-scaffold na na VOHG03000097.1 <> na Primary Assembly 55252 na mat_random_197 unplaced-scaffold na na VOHG03000098.1 <> na Primary Assembly 54173 na mat_random_201 unplaced-scaffold na na VOHG03000099.1 <> na Primary Assembly 52543 na mat_random_219 unplaced-scaffold na na VOHG03000100.1 <> na Primary Assembly 50839 na mat_random_225 unplaced-scaffold na na VOHG03000101.1 <> na Primary Assembly 49962 na mat_random_226 unplaced-scaffold na na VOHG03000102.1 <> na Primary Assembly 49904 na mat_random_230 unplaced-scaffold na na VOHG03000103.1 <> na Primary Assembly 49585 na mat_random_231 unplaced-scaffold na na VOHG03000104.1 <> na Primary Assembly 49450 na mat_random_233 unplaced-scaffold na na VOHG03000105.1 <> na Primary Assembly 49106 na mat_random_238 unplaced-scaffold na na VOHG03000106.1 <> na Primary Assembly 48560 na mat_random_239 unplaced-scaffold na na VOHG03000107.1 <> na Primary Assembly 48201 na mat_random_242 unplaced-scaffold na na VOHG03000108.1 <> na Primary Assembly 47270 na mat_random_252 unplaced-scaffold na na VOHG03000109.1 <> na Primary Assembly 46301 na mat_random_251 unplaced-scaffold na na VOHG03000110.1 <> na Primary Assembly 46210 na mat_random_254 unplaced-scaffold na na VOHG03000111.1 <> na Primary Assembly 45827 na mat_random_257 unplaced-scaffold na na VOHG03000112.1 <> na Primary Assembly 45267 na mat_random_269 unplaced-scaffold na na VOHG03000113.1 <> na Primary Assembly 44155 na mat_random_280 unplaced-scaffold na na VOHG03000114.1 <> na Primary Assembly 42861 na mat_random_283 unplaced-scaffold na na VOHG03000115.1 <> na Primary Assembly 42646 na mat_random_294 unplaced-scaffold na na VOHG03000116.1 <> na Primary Assembly 41811 na mat_random_295 unplaced-scaffold na na VOHG03000117.1 <> na Primary Assembly 41710 na mat_random_306 unplaced-scaffold na na VOHG03000118.1 <> na Primary Assembly 40921 na mat_random_310 unplaced-scaffold na na VOHG03000119.1 <> na Primary Assembly 40575 na mat_random_325 unplaced-scaffold na na VOHG03000120.1 <> na Primary Assembly 39434 na mat_random_337 unplaced-scaffold na na VOHG03000121.1 <> na Primary Assembly 38615 na mat_random_336 unplaced-scaffold na na VOHG03000122.1 <> na Primary Assembly 38598 na mat_random_344 unplaced-scaffold na na VOHG03000123.1 <> na Primary Assembly 38282 na mat_random_354 unplaced-scaffold na na VOHG03000124.1 <> na Primary Assembly 37695 na mat_random_358 unplaced-scaffold na na VOHG03000125.1 <> na Primary Assembly 37129 na mat_random_363 unplaced-scaffold na na VOHG03000126.1 <> na Primary Assembly 36780 na mat_random_376 unplaced-scaffold na na VOHG03000127.1 <> na Primary Assembly 35625 na mat_random_385 unplaced-scaffold na na VOHG03000128.1 <> na Primary Assembly 35054 na mat_random_401 unplaced-scaffold na na VOHG03000129.1 <> na Primary Assembly 33723 na mat_random_405 unplaced-scaffold na na VOHG03000130.1 <> na Primary Assembly 33611 na mat_random_411 unplaced-scaffold na na VOHG03000131.1 <> na Primary Assembly 33317 na mat_random_410 unplaced-scaffold na na VOHG03000132.1 <> na Primary Assembly 33314 na mat_random_416 unplaced-scaffold na na VOHG03000133.1 <> na Primary Assembly 32883 na mat_random_427 unplaced-scaffold na na VOHG03000134.1 <> na Primary Assembly 31876 na mat_random_441 unplaced-scaffold na na VOHG03000135.1 <> na Primary Assembly 30942 na mat_random_443 unplaced-scaffold na na VOHG03000136.1 <> na Primary Assembly 30727 na mat_random_463 unplaced-scaffold na na VOHG03000137.1 <> na Primary Assembly 29287 na mat_random_471 unplaced-scaffold na na VOHG03000138.1 <> na Primary Assembly 28746 na mat_random_470 unplaced-scaffold na na VOHG03000139.1 <> na Primary Assembly 28643 na mat_random_478 unplaced-scaffold na na VOHG03000140.1 <> na Primary Assembly 28141 na mat_random_483 unplaced-scaffold na na VOHG03000141.1 <> na Primary Assembly 27717 na mat_random_495 unplaced-scaffold na na VOHG03000142.1 <> na Primary Assembly 26723 na mat_random_494 unplaced-scaffold na na VOHG03000143.1 <> na Primary Assembly 26706 na mat_random_496 unplaced-scaffold na na VOHG03000144.1 <> na Primary Assembly 26666 na mat_random_501 unplaced-scaffold na na VOHG03000145.1 <> na Primary Assembly 26328 na mat_random_502 unplaced-scaffold na na VOHG03000146.1 <> na Primary Assembly 26251 na mat_random_503 unplaced-scaffold na na VOHG03000147.1 <> na Primary Assembly 26215 na mat_random_509 unplaced-scaffold na na VOHG03000148.1 <> na Primary Assembly 26054 na mat_random_515 unplaced-scaffold na na VOHG03000149.1 <> na Primary Assembly 25700 na mat_random_517 unplaced-scaffold na na VOHG03000150.1 <> na Primary Assembly 25564 na mat_random_519 unplaced-scaffold na na VOHG03000151.1 <> na Primary Assembly 25394 na mat_random_527 unplaced-scaffold na na VOHG03000152.1 <> na Primary Assembly 24513 na mat_random_534 unplaced-scaffold na na VOHG03000153.1 <> na Primary Assembly 24240 na mat_random_536 unplaced-scaffold na na VOHG03000154.1 <> na Primary Assembly 24078 na mat_random_537 unplaced-scaffold na na VOHG03000155.1 <> na Primary Assembly 24003 na mat_random_539 unplaced-scaffold na na VOHG03000156.1 <> na Primary Assembly 23822 na mat_random_540 unplaced-scaffold na na VOHG03000157.1 <> na Primary Assembly 23634 na mat_random_547 unplaced-scaffold na na VOHG03000158.1 <> na Primary Assembly 23387 na mat_random_550 unplaced-scaffold na na VOHG03000159.1 <> na Primary Assembly 23319 na mat_random_560 unplaced-scaffold na na VOHG03000160.1 <> na Primary Assembly 22751 na mat_random_573 unplaced-scaffold na na VOHG03000161.1 <> na Primary Assembly 22046 na mat_random_574 unplaced-scaffold na na VOHG03000162.1 <> na Primary Assembly 21894 na mat_random_582 unplaced-scaffold na na VOHG03000163.1 <> na Primary Assembly 21114 na mat_random_588 unplaced-scaffold na na VOHG03000164.1 <> na Primary Assembly 20749 na mat_random_612 unplaced-scaffold na na VOHG03000165.1 <> na Primary Assembly 18726 na mat_random_613 unplaced-scaffold na na VOHG03000166.1 <> na Primary Assembly 18315 na mat_random_615 unplaced-scaffold na na VOHG03000167.1 <> na Primary Assembly 18218 na mat_random_622 unplaced-scaffold na na VOHG03000168.1 <> na Primary Assembly 17909 na mat_random_634 unplaced-scaffold na na VOHG03000169.1 <> na Primary Assembly 16709 na mat_random_637 unplaced-scaffold na na VOHG03000170.1 <> na Primary Assembly 16678 na mat_random_647 unplaced-scaffold na na VOHG03000171.1 <> na Primary Assembly 15888 na mat_random_646 unplaced-scaffold na na VOHG03000172.1 <> na Primary Assembly 15791 na mat_random_652 unplaced-scaffold na na VOHG03000173.1 <> na Primary Assembly 15594 na mat_random_653 unplaced-scaffold na na VOHG03000174.1 <> na Primary Assembly 15560 na mat_random_657 unplaced-scaffold na na VOHG03000175.1 <> na Primary Assembly 15037 na mat_random_659 unplaced-scaffold na na VOHG03000176.1 <> na Primary Assembly 14985 na mat_random_662 unplaced-scaffold na na VOHG03000177.1 <> na Primary Assembly 14722 na mat_random_665 unplaced-scaffold na na VOHG03000178.1 <> na Primary Assembly 14628 na mat_random_673 unplaced-scaffold na na VOHG03000179.1 <> na Primary Assembly 13910 na mat_random_674 unplaced-scaffold na na VOHG03000180.1 <> na Primary Assembly 13847 na mat_random_680 unplaced-scaffold na na VOHG03000181.1 <> na Primary Assembly 13626 na mat_random_691 unplaced-scaffold na na VOHG03000182.1 <> na Primary Assembly 12968 na mat_random_692 unplaced-scaffold na na VOHG03000183.1 <> na Primary Assembly 12960 na mat_random_697 unplaced-scaffold na na VOHG03000184.1 <> na Primary Assembly 12556 na mat_random_703 unplaced-scaffold na na VOHG03000185.1 <> na Primary Assembly 12037 na mat_random_705 unplaced-scaffold na na VOHG03000186.1 <> na Primary Assembly 11988 na mat_random_706 unplaced-scaffold na na VOHG03000187.1 <> na Primary Assembly 11839 na mat_random_707 unplaced-scaffold na na VOHG03000188.1 <> na Primary Assembly 11600 na mat_random_709 unplaced-scaffold na na VOHG03000189.1 <> na Primary Assembly 11502 na mat_random_720 unplaced-scaffold na na VOHG03000190.1 <> na Primary Assembly 10294 na mat_random_729 unplaced-scaffold na na VOHG03000191.1 <> na Primary Assembly 9964 na mat_random_731 unplaced-scaffold na na VOHG03000192.1 <> na Primary Assembly 9401 na mat_random_737 unplaced-scaffold na na VOHG03000193.1 <> na Primary Assembly 8726 na mat_random_745 unplaced-scaffold na na VOHG03000194.1 <> na Primary Assembly 7007 na mat_random_753 unplaced-scaffold na na VOHG03000195.1 <> na Primary Assembly 4946 na mat_random_756 unplaced-scaffold na na VOHG03000196.1 <> na Primary Assembly 4678 na mat_random_757 unplaced-scaffold na na VOHG03000197.1 <> na Primary Assembly 4277 na mat_random_758 unplaced-scaffold na na VOHG03000198.1 <> na Primary Assembly 3567 na mat_random_760 unplaced-scaffold na na VOHG03000199.1 <> na Primary Assembly 3540 na mat_random_761 unplaced-scaffold na na VOHG03000200.1 <> na Primary Assembly 3494 na mat_random_765 unplaced-scaffold na na VOHG03000201.1 <> na Primary Assembly 3177 na mat_random_766 unplaced-scaffold na na VOHG03000202.1 <> na Primary Assembly 3064 na mat_random_770 unplaced-scaffold na na VOHG03000203.1 <> na Primary Assembly 2847 na mat_random_771 unplaced-scaffold na na VOHG03000204.1 <> na Primary Assembly 2539 na mat_random_774 unplaced-scaffold na na VOHG03000205.1 <> na Primary Assembly 1224 na bTaeGut2_MT assembled-molecule MT Mitochondrion CM018288.2 <> na non-nuclear 16856 na