# Assembly name: mZalCal1.pri # Organism name: Zalophus californianus (California sea lion) # Isolate: mZalCal1 # Sex: male # Taxid: 9704 # BioSample: SAMN12368149 # BioProject: PRJNA559673 # Submitter: Vertebrate Genomes Project # Date: 2019-12-18 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: WPOA01 # Assembly method: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 7.0.1.66975; purge_dups v. v1; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; longranger align v. 2.2.2; gEVAL manual curation v. 2019-11-08; VGP assembly pipeline individual v. 1.6 # Expected final version: no # Genome coverage: 80.51x # Sequencing technology: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # GenBank assembly accession: GCA_009762305.1 # Linked assembly: GCA_009762295.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009762345.1 Primary Assembly ## GCA_009762355.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name S1 assembled-molecule 1 Chromosome CM019802.1 <> na Primary Assembly 216115662 na S2 assembled-molecule 2 Chromosome CM019803.1 <> na Primary Assembly 203405867 na S3 assembled-molecule 3 Chromosome CM019804.1 <> na Primary Assembly 195893561 na S4 assembled-molecule 4 Chromosome CM019805.1 <> na Primary Assembly 191601404 na S5 assembled-molecule 5 Chromosome CM019806.1 <> na Primary Assembly 155364843 na S13 assembled-molecule 6 Chromosome CM019807.1 <> na Primary Assembly 147122310 na S6 assembled-molecule 7 Chromosome CM019808.1 <> na Primary Assembly 146931682 na S8 assembled-molecule 8 Chromosome CM019809.1 <> na Primary Assembly 140581092 na S7 assembled-molecule 9 Chromosome CM019810.1 <> na Primary Assembly 140425053 na S11 assembled-molecule 10 Chromosome CM019811.1 <> na Primary Assembly 114255764 na S12 assembled-molecule 11 Chromosome CM019812.1 <> na Primary Assembly 113585215 na S14 assembled-molecule 12 Chromosome CM019813.1 <> na Primary Assembly 107194496 na S15 assembled-molecule 13 Chromosome CM019814.1 <> na Primary Assembly 95463072 na S16 assembled-molecule 14 Chromosome CM019815.1 <> na Primary Assembly 94107153 na S17 assembled-molecule 15 Chromosome CM019816.1 <> na Primary Assembly 89156239 na S18 assembled-molecule 16 Chromosome CM019817.1 <> na Primary Assembly 62786445 na S19 assembled-molecule 17 Chromosome CM019818.1 <> na Primary Assembly 60386971 na S9 assembled-molecule X Chromosome CM019819.1 <> na Primary Assembly 129077734 na S10 assembled-molecule Y Chromosome CM019820.1 <> na Primary Assembly 4006675 na scaffold_26_arrow_ctg1 unplaced-scaffold na na WPOA01000020.1 <> na Primary Assembly 296382 na scaffold_30_arrow_ctg1 unplaced-scaffold na na WPOA01000021.1 <> na Primary Assembly 95664 na scaffold_31_arrow_ctg1 unplaced-scaffold na na WPOA01000022.1 <> na Primary Assembly 79815 na scaffold_32_arrow_ctg1 unplaced-scaffold na na WPOA01000023.1 <> na Primary Assembly 74562 na scaffold_34_arrow_ctg1 unplaced-scaffold na na WPOA01000024.1 <> na Primary Assembly 66739 na scaffold_35_arrow_ctg1 unplaced-scaffold na na WPOA01000025.1 <> na Primary Assembly 64927 na scaffold_38_arrow_ctg1 unplaced-scaffold na na WPOA01000026.1 <> na Primary Assembly 55851 na scaffold_39_arrow_ctg1 unplaced-scaffold na na WPOA01000027.1 <> na Primary Assembly 53755 na scaffold_40_arrow_ctg1 unplaced-scaffold na na WPOA01000028.1 <> na Primary Assembly 50614 na scaffold_45_arrow_ctg1 unplaced-scaffold na na WPOA01000029.1 <> na Primary Assembly 42764 na scaffold_46_arrow_ctg1 unplaced-scaffold na na WPOA01000030.1 <> na Primary Assembly 41770 na scaffold_47_arrow_ctg1 unplaced-scaffold na na WPOA01000031.1 <> na Primary Assembly 40626 na scaffold_48_arrow_ctg1 unplaced-scaffold na na WPOA01000032.1 <> na Primary Assembly 39190 na scaffold_51_arrow_ctg1 unplaced-scaffold na na WPOA01000033.1 <> na Primary Assembly 34760 na scaffold_52_arrow_ctg1 unplaced-scaffold na na WPOA01000034.1 <> na Primary Assembly 31551 na scaffold_53_arrow_ctg1 unplaced-scaffold na na WPOA01000035.1 <> na Primary Assembly 23728 na scaffold_54_arrow_ctg1 unplaced-scaffold na na WPOA01000036.1 <> na Primary Assembly 22673 na scaffold_55_arrow_ctg1 unplaced-scaffold na na WPOA01000037.1 <> na Primary Assembly 15915 na scaffold_56_arrow_ctg1 unplaced-scaffold na na WPOA01000038.1 <> na Primary Assembly 15233 na scaffold_57_arrow_ctg1 unplaced-scaffold na na WPOA01000039.1 <> na Primary Assembly 11214 na scaffold_58_arrow_ctg1 unplaced-scaffold na na WPOA01000040.1 <> na Primary Assembly 9293 na scaffold_59_arrow_ctg1 unplaced-scaffold na na WPOA01000041.1 <> na Primary Assembly 7672 na scaffold_60_arrow_ctg1 unplaced-scaffold na na WPOA01000042.1 <> na Primary Assembly 5852 na mZalCal1_MT assembled-molecule MT Mitochondrion CM019821.1 <> na non-nuclear 16715 na