# Assembly name: sPriPec2.pri # Organism name: Pristis pectinata (smalltooth sawfish) # Isolate: sPriPec2 # Sex: female # Taxid: 685728 # BioSample: SAMN12629505 # BioProject: PRJNA562009 # Submitter: Vertebrate Genomes Project # Date: 2019-12-19 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: WOXU01 # Assembly method: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-11-18; VGP assembly pipeline individual v. 1.5 # Expected final version: no # Genome coverage: 61.91x # Sequencing technology: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # GenBank assembly accession: GCA_009764475.1 # Linked assembly: GCA_009764485.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009764525.1 Primary Assembly ## GCA_009764535.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Super_scaffold_1 assembled-molecule 1 Chromosome CM019855.1 <> na Primary Assembly 149968914 na Super_scaffold_2 assembled-molecule 2 Chromosome CM019856.1 <> na Primary Assembly 145556842 na Super_scaffold_3 assembled-molecule 3 Chromosome CM019857.1 <> na Primary Assembly 144684616 na Super_scaffold_4 assembled-molecule 4 Chromosome CM019858.1 <> na Primary Assembly 120465868 na Super_scaffold_5 assembled-molecule 5 Chromosome CM019859.1 <> na Primary Assembly 116561020 na Super_scaffold_6 assembled-molecule 6 Chromosome CM019860.1 <> na Primary Assembly 115668120 na Super_scaffold_7 assembled-molecule 7 Chromosome CM019861.1 <> na Primary Assembly 104354160 na Super_scaffold_8 assembled-molecule 8 Chromosome CM019862.1 <> na Primary Assembly 103001046 na Super_scaffold_9 assembled-molecule 9 Chromosome CM019863.1 <> na Primary Assembly 102490209 na Super_scaffold_10 assembled-molecule 10 Chromosome CM019864.1 <> na Primary Assembly 101699621 na Super_scaffold_11 assembled-molecule 11 Chromosome CM019865.1 <> na Primary Assembly 88408542 na Super_scaffold_18 assembled-molecule 12 Chromosome CM019866.1 <> na Primary Assembly 57793762 na Super_scaffold_13 assembled-molecule 13 Chromosome CM019867.1 <> na Primary Assembly 53952022 na Super_scaffold_12 assembled-molecule 14 Chromosome CM019868.1 <> na Primary Assembly 53698128 na Super_scaffold_14 assembled-molecule 15 Chromosome CM019869.1 <> na Primary Assembly 50858502 na Super_scaffold_15 assembled-molecule 16 Chromosome CM019870.1 <> na Primary Assembly 46354275 na Super_scaffold_19 assembled-molecule 17 Chromosome CM019871.1 <> na Primary Assembly 45060308 na Super_scaffold_16 assembled-molecule 18 Chromosome CM019872.1 <> na Primary Assembly 44725268 na Super_scaffold_17 assembled-molecule 19 Chromosome CM019873.1 <> na Primary Assembly 44168680 na Super_scaffold_20 assembled-molecule 20 Chromosome CM019874.1 <> na Primary Assembly 42963292 na Super_scaffold_21 assembled-molecule 21 Chromosome CM019875.1 <> na Primary Assembly 39010861 na Super_scaffold_22 assembled-molecule 22 Chromosome CM019876.1 <> na Primary Assembly 38352228 na Super_scaffold_23 assembled-molecule 23 Chromosome CM019877.1 <> na Primary Assembly 36456661 na Super_scaffold_24 assembled-molecule 24 Chromosome CM019878.1 <> na Primary Assembly 35742751 na Super_scaffold_25 assembled-molecule 25 Chromosome CM019879.1 <> na Primary Assembly 33830644 na Super_scaffold_26 assembled-molecule 26 Chromosome CM019880.1 <> na Primary Assembly 32947653 na Super_scaffold_27 assembled-molecule 27 Chromosome CM019881.1 <> na Primary Assembly 31931137 na Super_scaffold_28 assembled-molecule 28 Chromosome CM019882.1 <> na Primary Assembly 31336126 na Super_scaffold_30 assembled-molecule 29 Chromosome CM019883.1 <> na Primary Assembly 28341390 na Super_scaffold_29 assembled-molecule 30 Chromosome CM019884.1 <> na Primary Assembly 27530392 na Super_scaffold_31 assembled-molecule 31 Chromosome CM019885.1 <> na Primary Assembly 22482795 na Super_scaffold_33 assembled-molecule 32 Chromosome CM019886.1 <> na Primary Assembly 21749021 na Super_scaffold_34 assembled-molecule 33 Chromosome CM019887.1 <> na Primary Assembly 20193044 na Super_scaffold_35 assembled-molecule 34 Chromosome CM019888.1 <> na Primary Assembly 19913265 na Super_scaffold_32 assembled-molecule 35 Chromosome CM019889.1 <> na Primary Assembly 19564846 na Super_scaffold_36 assembled-molecule 36 Chromosome CM019890.1 <> na Primary Assembly 16413646 na Super_scaffold_38 assembled-molecule 37 Chromosome CM019891.1 <> na Primary Assembly 14606458 na Super_scaffold_37 assembled-molecule 38 Chromosome CM019892.1 <> na Primary Assembly 13611680 na Super_scaffold_40 assembled-molecule 39 Chromosome CM019893.1 <> na Primary Assembly 10237845 na Super_scaffold_39 assembled-molecule 40 Chromosome CM019894.1 <> na Primary Assembly 9426723 na Super_scaffold_45 assembled-molecule 41 Chromosome CM019895.1 <> na Primary Assembly 5270553 na Super_scaffold_41 assembled-molecule 42 Chromosome CM019896.1 <> na Primary Assembly 4200876 na Super_scaffold_42 assembled-molecule 43 Chromosome CM019897.1 <> na Primary Assembly 3864382 na Super_scaffold_44 assembled-molecule 44 Chromosome CM019898.1 <> na Primary Assembly 3835809 na Super_scaffold_43 assembled-molecule 45 Chromosome CM019899.1 <> na Primary Assembly 3175387 na Super_scaffold_46 assembled-molecule 46 Chromosome CM019900.1 <> na Primary Assembly 2723055 na scaffold_133_arrow_ctg1 unplaced-scaffold na na WOXU01000047.1 <> na Primary Assembly 82398 na scaffold_138_arrow_ctg1 unplaced-scaffold na na WOXU01000048.1 <> na Primary Assembly 73913 na scaffold_145_arrow_ctg1 unplaced-scaffold na na WOXU01000049.1 <> na Primary Assembly 68557 na scaffold_148_arrow_ctg1 unplaced-scaffold na na WOXU01000050.1 <> na Primary Assembly 63406 na scaffold_165_arrow_ctg1 unplaced-scaffold na na WOXU01000051.1 <> na Primary Assembly 53207 na scaffold_169_arrow_ctg1 unplaced-scaffold na na WOXU01000052.1 <> na Primary Assembly 50156 na scaffold_176_arrow_ctg1 unplaced-scaffold na na WOXU01000053.1 <> na Primary Assembly 47612 na scaffold_199_arrow_ctg1 unplaced-scaffold na na WOXU01000054.1 <> na Primary Assembly 34299 na scaffold_207_arrow_ctg1 unplaced-scaffold na na WOXU01000055.1 <> na Primary Assembly 32863 na scaffold_63_arrow_ctg1 unplaced-scaffold na na WOXU01000056.1 <> na Primary Assembly 341033 na scaffold_89_arrow_ctg1 unplaced-scaffold na na WOXU01000057.1 <> na Primary Assembly 226919 na scaffold_96_arrow_ctg1 unplaced-scaffold na na WOXU01000058.1 <> na Primary Assembly 158828 na scaffold_100_arrow_ctg1 unplaced-scaffold na na WOXU01000059.1 <> na Primary Assembly 147400 na scaffold_105_arrow_ctg1 unplaced-scaffold na na WOXU01000060.1 <> na Primary Assembly 130946 na scaffold_107_arrow_ctg1 unplaced-scaffold na na WOXU01000061.1 <> na Primary Assembly 121119 na scaffold_108_arrow_ctg1 unplaced-scaffold na na WOXU01000062.1 <> na Primary Assembly 116538 na scaffold_109_arrow_ctg1 unplaced-scaffold na na WOXU01000063.1 <> na Primary Assembly 111106 na scaffold_110_arrow_ctg1 unplaced-scaffold na na WOXU01000064.1 <> na Primary Assembly 108269 na scaffold_111_arrow_ctg1 unplaced-scaffold na na WOXU01000065.1 <> na Primary Assembly 107337 na scaffold_113_arrow_ctg1 unplaced-scaffold na na WOXU01000066.1 <> na Primary Assembly 107052 na scaffold_115_arrow_ctg1 unplaced-scaffold na na WOXU01000067.1 <> na Primary Assembly 107116 na scaffold_117_arrow_ctg1 unplaced-scaffold na na WOXU01000068.1 <> na Primary Assembly 104901 na scaffold_118_arrow_ctg1 unplaced-scaffold na na WOXU01000069.1 <> na Primary Assembly 103426 na scaffold_120_arrow_ctg1 unplaced-scaffold na na WOXU01000070.1 <> na Primary Assembly 100346 na scaffold_121_arrow_ctg1 unplaced-scaffold na na WOXU01000071.1 <> na Primary Assembly 97893 na scaffold_122_arrow_ctg1 unplaced-scaffold na na WOXU01000072.1 <> na Primary Assembly 97597 na scaffold_125_arrow_ctg1 unplaced-scaffold na na WOXU01000073.1 <> na Primary Assembly 94065 na scaffold_126_arrow_ctg1 unplaced-scaffold na na WOXU01000074.1 <> na Primary Assembly 93243 na scaffold_127_arrow_ctg1 unplaced-scaffold na na WOXU01000075.1 <> na Primary Assembly 89486 na scaffold_129_arrow_ctg1 unplaced-scaffold na na WOXU01000076.1 <> na Primary Assembly 87659 na scaffold_12_arrow_ctg1 unplaced-scaffold na na WOXU01000077.1 <> na Primary Assembly 141389 na scaffold_130_arrow_ctg1 unplaced-scaffold na na WOXU01000078.1 <> na Primary Assembly 87136 na scaffold_131_arrow_ctg1 unplaced-scaffold na na WOXU01000079.1 <> na Primary Assembly 86205 na scaffold_134_arrow_ctg1 unplaced-scaffold na na WOXU01000080.1 <> na Primary Assembly 81902 na scaffold_139_arrow_ctg1 unplaced-scaffold na na WOXU01000081.1 <> na Primary Assembly 74016 na scaffold_141_arrow_ctg1 unplaced-scaffold na na WOXU01000082.1 <> na Primary Assembly 69737 na scaffold_142_arrow_ctg1 unplaced-scaffold na na WOXU01000083.1 <> na Primary Assembly 70246 na scaffold_143_arrow_ctg1 unplaced-scaffold na na WOXU01000084.1 <> na Primary Assembly 70168 na scaffold_144_arrow_ctg1 unplaced-scaffold na na WOXU01000085.1 <> na Primary Assembly 68710 na scaffold_146_arrow_ctg1 unplaced-scaffold na na WOXU01000086.1 <> na Primary Assembly 66623 na scaffold_147_arrow_ctg1 unplaced-scaffold na na WOXU01000087.1 <> na Primary Assembly 65164 na scaffold_149_arrow_ctg1 unplaced-scaffold na na WOXU01000088.1 <> na Primary Assembly 62135 na scaffold_150_arrow_ctg1 unplaced-scaffold na na WOXU01000089.1 <> na Primary Assembly 61413 na scaffold_152_arrow_ctg1 unplaced-scaffold na na WOXU01000090.1 <> na Primary Assembly 61007 na scaffold_154_arrow_ctg1 unplaced-scaffold na na WOXU01000091.1 <> na Primary Assembly 60473 na scaffold_155_arrow_ctg1 unplaced-scaffold na na WOXU01000092.1 <> na Primary Assembly 58873 na scaffold_156_arrow_ctg1 unplaced-scaffold na na WOXU01000093.1 <> na Primary Assembly 58655 na scaffold_157_arrow_ctg1 unplaced-scaffold na na WOXU01000094.1 <> na Primary Assembly 56187 na scaffold_159_arrow_ctg1 unplaced-scaffold na na WOXU01000095.1 <> na Primary Assembly 54418 na scaffold_160_arrow_ctg1 unplaced-scaffold na na WOXU01000096.1 <> na Primary Assembly 54335 na scaffold_161_arrow_ctg1 unplaced-scaffold na na WOXU01000097.1 <> na Primary Assembly 54300 na scaffold_162_arrow_ctg1 unplaced-scaffold na na WOXU01000098.1 <> na Primary Assembly 53535 na scaffold_163_arrow_ctg1 unplaced-scaffold na na WOXU01000099.1 <> na Primary Assembly 53728 na scaffold_166_arrow_ctg1 unplaced-scaffold na na WOXU01000100.1 <> na Primary Assembly 53119 na scaffold_167_arrow_ctg1 unplaced-scaffold na na WOXU01000101.1 <> na Primary Assembly 53571 na scaffold_170_arrow_ctg1 unplaced-scaffold na na WOXU01000102.1 <> na Primary Assembly 49712 na scaffold_171_arrow_ctg1 unplaced-scaffold na na WOXU01000103.1 <> na Primary Assembly 49273 na scaffold_173_arrow_ctg1 unplaced-scaffold na na WOXU01000104.1 <> na Primary Assembly 49043 na scaffold_174_arrow_ctg1 unplaced-scaffold na na WOXU01000105.1 <> na Primary Assembly 48416 na scaffold_175_arrow_ctg1 unplaced-scaffold na na WOXU01000106.1 <> na Primary Assembly 48360 na scaffold_177_arrow_ctg1 unplaced-scaffold na na WOXU01000107.1 <> na Primary Assembly 46812 na scaffold_179_arrow_ctg1 unplaced-scaffold na na WOXU01000108.1 <> na Primary Assembly 46375 na scaffold_180_arrow_ctg1 unplaced-scaffold na na WOXU01000109.1 <> na Primary Assembly 46506 na scaffold_181_arrow_ctg1 unplaced-scaffold na na WOXU01000110.1 <> na Primary Assembly 44570 na scaffold_182_arrow_ctg1 unplaced-scaffold na na WOXU01000111.1 <> na Primary Assembly 44500 na scaffold_183_arrow_ctg1 unplaced-scaffold na na WOXU01000112.1 <> na Primary Assembly 44310 na scaffold_184_arrow_ctg1 unplaced-scaffold na na WOXU01000113.1 <> na Primary Assembly 43327 na scaffold_185_arrow_ctg1 unplaced-scaffold na na WOXU01000114.1 <> na Primary Assembly 43416 na scaffold_186_arrow_ctg1 unplaced-scaffold na na WOXU01000115.1 <> na Primary Assembly 42535 na scaffold_188_arrow_ctg1 unplaced-scaffold na na WOXU01000116.1 <> na Primary Assembly 40239 na scaffold_189_arrow_ctg1 unplaced-scaffold na na WOXU01000117.1 <> na Primary Assembly 38938 na scaffold_190_arrow_ctg1 unplaced-scaffold na na WOXU01000118.1 <> na Primary Assembly 38157 na scaffold_192_arrow_ctg1 unplaced-scaffold na na WOXU01000119.1 <> na Primary Assembly 37816 na scaffold_194_arrow_ctg1 unplaced-scaffold na na WOXU01000120.1 <> na Primary Assembly 37326 na scaffold_195_arrow_ctg1 unplaced-scaffold na na WOXU01000121.1 <> na Primary Assembly 37001 na scaffold_196_arrow_ctg1 unplaced-scaffold na na WOXU01000122.1 <> na Primary Assembly 34765 na scaffold_197_arrow_ctg1 unplaced-scaffold na na WOXU01000123.1 <> na Primary Assembly 34606 na scaffold_200_arrow_ctg1 unplaced-scaffold na na WOXU01000124.1 <> na Primary Assembly 33700 na scaffold_202_arrow_ctg1 unplaced-scaffold na na WOXU01000125.1 <> na Primary Assembly 33461 na scaffold_203_arrow_ctg1 unplaced-scaffold na na WOXU01000126.1 <> na Primary Assembly 33322 na scaffold_204_arrow_ctg1 unplaced-scaffold na na WOXU01000127.1 <> na Primary Assembly 33043 na scaffold_206_arrow_ctg1 unplaced-scaffold na na WOXU01000128.1 <> na Primary Assembly 32672 na scaffold_208_arrow_ctg1 unplaced-scaffold na na WOXU01000129.1 <> na Primary Assembly 32604 na scaffold_209_arrow_ctg1 unplaced-scaffold na na WOXU01000130.1 <> na Primary Assembly 32017 na scaffold_210_arrow_ctg1 unplaced-scaffold na na WOXU01000131.1 <> na Primary Assembly 32007 na scaffold_211_arrow_ctg1 unplaced-scaffold na na WOXU01000132.1 <> na Primary Assembly 30814 na scaffold_212_arrow_ctg1 unplaced-scaffold na na WOXU01000133.1 <> na Primary Assembly 30810 na scaffold_214_arrow_ctg1 unplaced-scaffold na na WOXU01000134.1 <> na Primary Assembly 28064 na scaffold_215_arrow_ctg1 unplaced-scaffold na na WOXU01000135.1 <> na Primary Assembly 27553 na scaffold_219_arrow_ctg1 unplaced-scaffold na na WOXU01000136.1 <> na Primary Assembly 27306 na scaffold_221_arrow_ctg1 unplaced-scaffold na na WOXU01000137.1 <> na Primary Assembly 26616 na scaffold_222_arrow_ctg1 unplaced-scaffold na na WOXU01000138.1 <> na Primary Assembly 26581 na scaffold_223_arrow_ctg1 unplaced-scaffold na na WOXU01000139.1 <> na Primary Assembly 26272 na scaffold_224_arrow_ctg1 unplaced-scaffold na na WOXU01000140.1 <> na Primary Assembly 25439 na scaffold_225_arrow_ctg1 unplaced-scaffold na na WOXU01000141.1 <> na Primary Assembly 25402 na scaffold_226_arrow_ctg1 unplaced-scaffold na na WOXU01000142.1 <> na Primary Assembly 24743 na scaffold_227_arrow_ctg1 unplaced-scaffold na na WOXU01000143.1 <> na Primary Assembly 23813 na scaffold_228_arrow_ctg1 unplaced-scaffold na na WOXU01000144.1 <> na Primary Assembly 23572 na scaffold_229_arrow_ctg1 unplaced-scaffold na na WOXU01000145.1 <> na Primary Assembly 23507 na scaffold_230_arrow_ctg1 unplaced-scaffold na na WOXU01000146.1 <> na Primary Assembly 23189 na scaffold_231_arrow_ctg1 unplaced-scaffold na na WOXU01000147.1 <> na Primary Assembly 23275 na scaffold_232_arrow_ctg1 unplaced-scaffold na na WOXU01000148.1 <> na Primary Assembly 22426 na scaffold_233_arrow_ctg1 unplaced-scaffold na na WOXU01000149.1 <> na Primary Assembly 22382 na scaffold_234_arrow_ctg1 unplaced-scaffold na na WOXU01000150.1 <> na Primary Assembly 22276 na scaffold_235_arrow_ctg1 unplaced-scaffold na na WOXU01000151.1 <> na Primary Assembly 22207 na scaffold_236_arrow_ctg1 unplaced-scaffold na na WOXU01000152.1 <> na Primary Assembly 22034 na scaffold_237_arrow_ctg1 unplaced-scaffold na na WOXU01000153.1 <> na Primary Assembly 21401 na scaffold_238_arrow_ctg1 unplaced-scaffold na na WOXU01000154.1 <> na Primary Assembly 21048 na scaffold_239_arrow_ctg1 unplaced-scaffold na na WOXU01000155.1 <> na Primary Assembly 20827 na scaffold_240_arrow_ctg1 unplaced-scaffold na na WOXU01000156.1 <> na Primary Assembly 20474 na scaffold_241_arrow_ctg1 unplaced-scaffold na na WOXU01000157.1 <> na Primary Assembly 11274 na scaffold_242_arrow_ctg1 unplaced-scaffold na na WOXU01000158.1 <> na Primary Assembly 9380 na scaffold_243_arrow_ctg1 unplaced-scaffold na na WOXU01000159.1 <> na Primary Assembly 6320 na scaffold_244_arrow_ctg1 unplaced-scaffold na na WOXU01000160.1 <> na Primary Assembly 2875 na scaffold_245_arrow_ctg1 unplaced-scaffold na na WOXU01000161.1 <> na Primary Assembly 2670 na scaffold_246_arrow_ctg1 unplaced-scaffold na na WOXU01000162.1 <> na Primary Assembly 1519 na scaffold_247_arrow_ctg1 unplaced-scaffold na na WOXU01000163.1 <> na Primary Assembly 1311 na scaffold_248_arrow_ctg1 unplaced-scaffold na na WOXU01000164.1 <> na Primary Assembly 1242 na scaffold_38_arrow_ctg1 unplaced-scaffold na na WOXU01000165.1 <> na Primary Assembly 123112 na scaffold_66_arrow_ctg1 unplaced-scaffold na na WOXU01000166.1 <> na Primary Assembly 766026 na scaffold_76_arrow_ctg1 unplaced-scaffold na na WOXU01000167.1 <> na Primary Assembly 147863 na scaffold_88_arrow_ctg1 unplaced-scaffold na na WOXU01000168.1 <> na Primary Assembly 230910 na scaffold_92_arrow_ctg1 unplaced-scaffold na na WOXU01000169.1 <> na Primary Assembly 187133 na scaffold_93_arrow_ctg1 unplaced-scaffold na na WOXU01000170.1 <> na Primary Assembly 178848 na scaffold_94_arrow_ctg1 unplaced-scaffold na na WOXU01000171.1 <> na Primary Assembly 177569 na scaffold_99_arrow_ctg1 unplaced-scaffold na na WOXU01000172.1 <> na Primary Assembly 153917 na sPriPec2_MT assembled-molecule MT Mitochondrion CM019964.1 <> na non-nuclear 16803 na