# Assembly name: bPteGut1.pri # Organism name: Pterocles gutturalis (yellow-throated sandgrouse) # Isolate: bPteGut1 # Sex: male # Taxid: 240206 # BioSample: SAMN12623217 # BioProject: PRJNA561958 # Submitter: Vertebrate Genomes Project # Date: 2019-12-23 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: WNNE01 # Assembly method: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_dups v. 51544-08-31; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-10-16; VGP assembly pipeline individual v. 1.6 # Expected final version: no # Genome coverage: 70.94x # Sequencing technology: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # GenBank assembly accession: GCA_009769525.1 # Linked assembly: GCA_009769505.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009769575.1 Primary Assembly ## GCA_009769585.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM020141.1 <> na Primary Assembly 132921182 na SUPER_4 assembled-molecule 2 Chromosome CM020142.1 <> na Primary Assembly 83778584 na SUPER_18 assembled-molecule 3 Chromosome CM020143.1 <> na Primary Assembly 59926572 na SUPER_23 assembled-molecule 4 Chromosome CM020144.1 <> na Primary Assembly 56691344 na SUPER_2 assembled-molecule 5 Chromosome CM020145.1 <> na Primary Assembly 55653900 na SUPER_3 assembled-molecule 6 Chromosome CM020146.1 <> na Primary Assembly 47165387 na SUPER_21 assembled-molecule 7 Chromosome CM020147.1 <> na Primary Assembly 43262132 na SUPER_5 assembled-molecule 8 Chromosome CM020148.1 <> na Primary Assembly 43236964 na SUPER_8 assembled-molecule 9 Chromosome CM020149.1 <> na Primary Assembly 43085580 na SUPER_17 assembled-molecule 10 Chromosome CM020150.1 <> na Primary Assembly 39552128 na SUPER_22 assembled-molecule 11 Chromosome CM020151.1 <> na Primary Assembly 34034971 na SUPER_11 assembled-molecule 12 Chromosome CM020152.1 <> na Primary Assembly 31891934 na SUPER_9 assembled-molecule 13 Chromosome CM020153.1 <> na Primary Assembly 29575871 na SUPER_12 assembled-molecule 14 Chromosome CM020154.1 <> na Primary Assembly 23958529 na SUPER_10 assembled-molecule 15 Chromosome CM020155.1 <> na Primary Assembly 23712234 na SUPER_7 assembled-molecule 16 Chromosome CM020156.1 <> na Primary Assembly 22848831 na SUPER_14 assembled-molecule 17 Chromosome CM020157.1 <> na Primary Assembly 22307374 na SUPER_13 assembled-molecule 18 Chromosome CM020158.1 <> na Primary Assembly 22104377 na SUPER_15 assembled-molecule 19 Chromosome CM020159.1 <> na Primary Assembly 20664335 na SUPER_24 assembled-molecule 20 Chromosome CM020160.1 <> na Primary Assembly 18963229 na SUPER_16 assembled-molecule 21 Chromosome CM020161.1 <> na Primary Assembly 18451942 na SUPER_20 assembled-molecule 22 Chromosome CM020162.1 <> na Primary Assembly 16547218 na SUPER_19 assembled-molecule 23 Chromosome CM020163.1 <> na Primary Assembly 15754548 na SUPER_25 assembled-molecule 24 Chromosome CM020164.1 <> na Primary Assembly 13215248 na SUPER_27 assembled-molecule 25 Chromosome CM020165.1 <> na Primary Assembly 12302689 na SUPER_26 assembled-molecule 26 Chromosome CM020166.1 <> na Primary Assembly 12131577 na SUPER_29 assembled-molecule 27 Chromosome CM020167.1 <> na Primary Assembly 8681907 na SUPER_28 assembled-molecule 28 Chromosome CM020168.1 <> na Primary Assembly 7805984 na SUPER_30 assembled-molecule 29 Chromosome CM020169.1 <> na Primary Assembly 6941016 na SUPER_31 assembled-molecule 30 Chromosome CM020170.1 <> na Primary Assembly 6826019 na SUPER_32 assembled-molecule 31 Chromosome CM020171.1 <> na Primary Assembly 6626037 na SUPER_33 assembled-molecule 32 Chromosome CM020172.1 <> na Primary Assembly 6509353 na SUPER_34 assembled-molecule 33 Chromosome CM020173.1 <> na Primary Assembly 4910132 na SUPER_35 assembled-molecule 34 Chromosome CM020174.1 <> na Primary Assembly 1409020 na SUPER_36 assembled-molecule 35 Chromosome CM020175.1 <> na Primary Assembly 1276852 na SUPER_6 assembled-molecule Z Chromosome CM020176.1 <> na Primary Assembly 126339708 na SUPER_37 unlocalized-scaffold 34 Chromosome WNNE01000037.1 <> na Primary Assembly 1190099 na scaffold_113_arrow_ctg1 unlocalized-scaffold 34 Chromosome WNNE01000040.1 <> na Primary Assembly 305936 na scaffold_110_arrow_ctg1 unlocalized-scaffold 35 Chromosome WNNE01000039.1 <> na Primary Assembly 357030 na scaffold_118_arrow_ctg1 unlocalized-scaffold 35 Chromosome WNNE01000041.1 <> na Primary Assembly 253072 na scaffold_102_arrow_ctg1 unplaced-scaffold na na WNNE01000038.1 <> na Primary Assembly 725825 na scaffold_121_arrow_ctg1 unplaced-scaffold na na WNNE01000042.1 <> na Primary Assembly 209838 na scaffold_122_arrow_ctg1 unplaced-scaffold na na WNNE01000043.1 <> na Primary Assembly 188150 na scaffold_124_arrow_ctg1 unplaced-scaffold na na WNNE01000044.1 <> na Primary Assembly 166457 na scaffold_125_arrow_ctg1 unplaced-scaffold na na WNNE01000045.1 <> na Primary Assembly 155887 na scaffold_126_arrow_ctg1 unplaced-scaffold na na WNNE01000046.1 <> na Primary Assembly 140397 na scaffold_127_arrow_ctg1 unplaced-scaffold na na WNNE01000047.1 <> na Primary Assembly 133176 na scaffold_128_arrow_ctg1 unplaced-scaffold na na WNNE01000048.1 <> na Primary Assembly 128309 na scaffold_129_arrow_ctg1 unplaced-scaffold na na WNNE01000049.1 <> na Primary Assembly 119512 na scaffold_130_arrow_ctg1 unplaced-scaffold na na WNNE01000050.1 <> na Primary Assembly 115520 na scaffold_133_arrow_ctg1 unplaced-scaffold na na WNNE01000051.1 <> na Primary Assembly 98076 na scaffold_136_arrow_ctg1 unplaced-scaffold na na WNNE01000052.1 <> na Primary Assembly 81075 na scaffold_137_arrow_ctg1 unplaced-scaffold na na WNNE01000053.1 <> na Primary Assembly 78047 na scaffold_139_arrow_ctg1 unplaced-scaffold na na WNNE01000054.1 <> na Primary Assembly 74885 na scaffold_140_arrow_ctg1 unplaced-scaffold na na WNNE01000055.1 <> na Primary Assembly 74289 na scaffold_141_arrow_ctg1 unplaced-scaffold na na WNNE01000056.1 <> na Primary Assembly 72160 na scaffold_143_arrow_ctg1 unplaced-scaffold na na WNNE01000057.1 <> na Primary Assembly 61913 na scaffold_146_arrow_ctg1 unplaced-scaffold na na WNNE01000058.1 <> na Primary Assembly 56988 na scaffold_147_arrow_ctg1 unplaced-scaffold na na WNNE01000059.1 <> na Primary Assembly 54981 na scaffold_148_arrow_ctg1 unplaced-scaffold na na WNNE01000060.1 <> na Primary Assembly 54686 na scaffold_150_arrow_ctg1 unplaced-scaffold na na WNNE01000061.1 <> na Primary Assembly 52069 na scaffold_152_arrow_ctg1 unplaced-scaffold na na WNNE01000062.1 <> na Primary Assembly 48935 na scaffold_153_arrow_ctg1 unplaced-scaffold na na WNNE01000063.1 <> na Primary Assembly 48043 na scaffold_154_arrow_ctg1 unplaced-scaffold na na WNNE01000064.1 <> na Primary Assembly 48439 na scaffold_155_arrow_ctg1 unplaced-scaffold na na WNNE01000065.1 <> na Primary Assembly 47328 na scaffold_156_arrow_ctg1 unplaced-scaffold na na WNNE01000066.1 <> na Primary Assembly 46090 na scaffold_158_arrow_ctg1 unplaced-scaffold na na WNNE01000067.1 <> na Primary Assembly 44246 na scaffold_160_arrow_ctg1 unplaced-scaffold na na WNNE01000068.1 <> na Primary Assembly 35997 na scaffold_161_arrow_ctg1 unplaced-scaffold na na WNNE01000069.1 <> na Primary Assembly 34987 na scaffold_163_arrow_ctg1 unplaced-scaffold na na WNNE01000070.1 <> na Primary Assembly 31743 na scaffold_164_arrow_ctg1 unplaced-scaffold na na WNNE01000071.1 <> na Primary Assembly 30918 na scaffold_165_arrow_ctg1 unplaced-scaffold na na WNNE01000072.1 <> na Primary Assembly 29523 na scaffold_166_arrow_ctg1 unplaced-scaffold na na WNNE01000073.1 <> na Primary Assembly 29106 na scaffold_167_arrow_ctg1 unplaced-scaffold na na WNNE01000074.1 <> na Primary Assembly 29011 na scaffold_170_arrow_ctg1 unplaced-scaffold na na WNNE01000075.1 <> na Primary Assembly 27774 na scaffold_172_arrow_ctg1 unplaced-scaffold na na WNNE01000076.1 <> na Primary Assembly 27374 na scaffold_173_arrow_ctg1 unplaced-scaffold na na WNNE01000077.1 <> na Primary Assembly 27308 na scaffold_174_arrow_ctg1 unplaced-scaffold na na WNNE01000078.1 <> na Primary Assembly 25080 na scaffold_175_arrow_ctg1 unplaced-scaffold na na WNNE01000079.1 <> na Primary Assembly 25046 na scaffold_177_arrow_ctg1 unplaced-scaffold na na WNNE01000080.1 <> na Primary Assembly 24149 na scaffold_178_arrow_ctg1 unplaced-scaffold na na WNNE01000081.1 <> na Primary Assembly 23555 na scaffold_179_arrow_ctg1 unplaced-scaffold na na WNNE01000082.1 <> na Primary Assembly 23386 na scaffold_180_arrow_ctg1 unplaced-scaffold na na WNNE01000083.1 <> na Primary Assembly 21943 na scaffold_181_arrow_ctg1 unplaced-scaffold na na WNNE01000084.1 <> na Primary Assembly 22164 na scaffold_182_arrow_ctg1 unplaced-scaffold na na WNNE01000085.1 <> na Primary Assembly 21614 na scaffold_183_arrow_ctg1 unplaced-scaffold na na WNNE01000086.1 <> na Primary Assembly 21595 na scaffold_99_arrow_ctg1 unplaced-scaffold na na WNNE01000087.1 <> na Primary Assembly 455281 na scaffold_57_arrow_ctg1 unplaced-scaffold na na WNNE01000088.1 <> na Primary Assembly 134569 na bPteGut1_MT assembled-molecule MT Mitochondrion CM020177.1 <> na non-nuclear 24468 na