# Assembly name: bCygOlo1.pri # Organism name: Cygnus olor (mute swan) # Isolate: bCygOlo1 # Sex: male # Taxid: 8869 # BioSample: SAMN12621369 # BioProject: PRJNA561960 # Submitter: Vertebrate Genomes Project # Date: 2019-12-23 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: WNMI01 # Assembly method: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_haplotigs v. 1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-09-26; VGP assembly pipeline individual v. 1.5 # Expected final version: no # Genome coverage: 60.23x # Sequencing technology: PacBio Sequel 1 CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # GenBank assembly accession: GCA_009769625.1 # Linked assembly: GCA_009769485.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009769645.1 Primary Assembly ## GCA_009769655.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_scf_1 assembled-molecule 1 Chromosome CM020065.1 <> na Primary Assembly 209740803 na SUPER_scf_4 assembled-molecule 2 Chromosome CM020066.1 <> na Primary Assembly 161160915 na SUPER_scf_2 assembled-molecule 3 Chromosome CM020067.1 <> na Primary Assembly 121161405 na SUPER_scf_3 assembled-molecule 4 Chromosome CM020068.1 <> na Primary Assembly 77806539 na SUPER_scf_5 assembled-molecule 5 Chromosome CM020069.1 <> na Primary Assembly 66085727 na SUPER_scf_6 assembled-molecule 6 Chromosome CM020070.1 <> na Primary Assembly 40597510 na SUPER_scf_7 assembled-molecule 7 Chromosome CM020071.1 <> na Primary Assembly 38445481 na SUPER_scf_8 assembled-molecule 8 Chromosome CM020072.1 <> na Primary Assembly 33098480 na SUPER_scf_9 assembled-molecule 9 Chromosome CM020073.1 <> na Primary Assembly 26863093 na SUPER_scf_10 assembled-molecule 10 Chromosome CM020074.1 <> na Primary Assembly 22536196 na SUPER_scf_11 assembled-molecule 11 Chromosome CM020075.1 <> na Primary Assembly 22219367 na SUPER_scf_12 assembled-molecule 12 Chromosome CM020076.1 <> na Primary Assembly 21853640 na SUPER_scf_13 assembled-molecule 13 Chromosome CM020077.1 <> na Primary Assembly 21469910 na SUPER_scf_14 assembled-molecule 14 Chromosome CM020078.1 <> na Primary Assembly 20170086 na SUPER_scf_15 assembled-molecule 15 Chromosome CM020079.1 <> na Primary Assembly 18104235 na SUPER_scf_16 assembled-molecule 16 Chromosome CM020080.1 <> na Primary Assembly 16327272 na SUPER_scf_17 assembled-molecule 17 Chromosome CM020081.1 <> na Primary Assembly 15594031 na SUPER_scf_18 assembled-molecule 18 Chromosome CM020082.1 <> na Primary Assembly 13182687 na SUPER_scf_19 assembled-molecule 19 Chromosome CM020083.1 <> na Primary Assembly 12196948 na SUPER_scf_20 assembled-molecule 20 Chromosome CM020084.1 <> na Primary Assembly 12179101 na SUPER_scf_23 assembled-molecule 21 Chromosome CM020085.1 <> na Primary Assembly 9107981 na SUPER_scf_24 assembled-molecule 22 Chromosome CM020086.1 <> na Primary Assembly 7827656 na SUPER_scf_25 assembled-molecule 23 Chromosome CM020087.1 <> na Primary Assembly 7743145 na SUPER_scf_26 assembled-molecule 24 Chromosome CM020088.1 <> na Primary Assembly 7030754 na SUPER_scf_28 assembled-molecule 25 Chromosome CM020089.1 <> na Primary Assembly 6682846 na SUPER_scf_27 assembled-molecule 26 Chromosome CM020090.1 <> na Primary Assembly 5979446 na SUPER_scf_31 assembled-molecule 27 Chromosome CM020091.1 <> na Primary Assembly 5774404 na SUPER_scf_38 assembled-molecule 28 Chromosome CM020092.1 <> na Primary Assembly 3067530 na SUPER_scf_42 assembled-molecule 29 Chromosome CM020093.1 <> na Primary Assembly 2501788 na SUPER_scf_60 assembled-molecule Z Chromosome CM020094.1 <> na Primary Assembly 81035313 na SUPER_scf_80 assembled-molecule W Chromosome CM020095.1 <> na Primary Assembly 4360214 na SUPER_scf_78 unlocalized-scaffold W Chromosome WNMI01000036.1 <> na Primary Assembly 3846276 na SUPER_scf_82 unlocalized-scaffold W Chromosome WNMI01000038.1 <> na Primary Assembly 1818571 na SUPER_scf_84 unlocalized-scaffold W Chromosome WNMI01000039.1 <> na Primary Assembly 1734820 na SUPER_scf_86 unlocalized-scaffold W Chromosome WNMI01000040.1 <> na Primary Assembly 1701956 na SUPER_scf_88 unlocalized-scaffold W Chromosome WNMI01000041.1 <> na Primary Assembly 1323685 na SUPER_scf_90 unlocalized-scaffold W Chromosome WNMI01000042.1 <> na Primary Assembly 1315410 na SUPER_scf_45 unplaced-scaffold na na WNMI01000030.1 <> na Primary Assembly 727315 na SUPER_scf_49 unplaced-scaffold na na WNMI01000031.1 <> na Primary Assembly 711869 na SUPER_scf_52 unplaced-scaffold na na WNMI01000032.1 <> na Primary Assembly 744676 na SUPER_scf_54 unplaced-scaffold na na WNMI01000033.1 <> na Primary Assembly 739355 na SUPER_scf_65 unplaced-scaffold na na WNMI01000035.1 <> na Primary Assembly 78807 na SUPER_scf_92 unplaced-scaffold na na WNMI01000043.1 <> na Primary Assembly 559603 na scf_94 unplaced-scaffold na na WNMI01000044.1 <> na Primary Assembly 92943 na scf_95 unplaced-scaffold na na WNMI01000045.1 <> na Primary Assembly 82504 na scf_96 unplaced-scaffold na na WNMI01000046.1 <> na Primary Assembly 52929 na scf_97 unplaced-scaffold na na WNMI01000047.1 <> na Primary Assembly 34483 na scf_98 unplaced-scaffold na na WNMI01000048.1 <> na Primary Assembly 15902 na scf_99 unplaced-scaffold na na WNMI01000049.1 <> na Primary Assembly 104346 na scf_100 unplaced-scaffold na na WNMI01000050.1 <> na Primary Assembly 97321 na scf_101 unplaced-scaffold na na WNMI01000051.1 <> na Primary Assembly 96517 na scf_102 unplaced-scaffold na na WNMI01000052.1 <> na Primary Assembly 94397 na scf_103 unplaced-scaffold na na WNMI01000053.1 <> na Primary Assembly 94270 na scf_104 unplaced-scaffold na na WNMI01000054.1 <> na Primary Assembly 92441 na scf_105 unplaced-scaffold na na WNMI01000055.1 <> na Primary Assembly 92440 na scf_106 unplaced-scaffold na na WNMI01000056.1 <> na Primary Assembly 91035 na scf_107 unplaced-scaffold na na WNMI01000057.1 <> na Primary Assembly 87165 na scf_108 unplaced-scaffold na na WNMI01000058.1 <> na Primary Assembly 83680 na scf_109 unplaced-scaffold na na WNMI01000059.1 <> na Primary Assembly 81055 na scf_110 unplaced-scaffold na na WNMI01000060.1 <> na Primary Assembly 79459 na scf_111 unplaced-scaffold na na WNMI01000061.1 <> na Primary Assembly 70698 na scf_112 unplaced-scaffold na na WNMI01000062.1 <> na Primary Assembly 67881 na scf_113 unplaced-scaffold na na WNMI01000063.1 <> na Primary Assembly 64825 na scf_114 unplaced-scaffold na na WNMI01000064.1 <> na Primary Assembly 63503 na scf_115 unplaced-scaffold na na WNMI01000065.1 <> na Primary Assembly 58261 na scf_116 unplaced-scaffold na na WNMI01000066.1 <> na Primary Assembly 57294 na scf_117 unplaced-scaffold na na WNMI01000067.1 <> na Primary Assembly 56198 na scf_118 unplaced-scaffold na na WNMI01000068.1 <> na Primary Assembly 51554 na scf_119 unplaced-scaffold na na WNMI01000069.1 <> na Primary Assembly 51678 na scf_120 unplaced-scaffold na na WNMI01000070.1 <> na Primary Assembly 50443 na scf_121 unplaced-scaffold na na WNMI01000071.1 <> na Primary Assembly 49747 na scf_122 unplaced-scaffold na na WNMI01000072.1 <> na Primary Assembly 48693 na scf_123 unplaced-scaffold na na WNMI01000073.1 <> na Primary Assembly 47816 na scf_124 unplaced-scaffold na na WNMI01000074.1 <> na Primary Assembly 43829 na scf_125 unplaced-scaffold na na WNMI01000075.1 <> na Primary Assembly 43715 na scf_126 unplaced-scaffold na na WNMI01000076.1 <> na Primary Assembly 41602 na scf_127 unplaced-scaffold na na WNMI01000077.1 <> na Primary Assembly 41962 na scf_128 unplaced-scaffold na na WNMI01000078.1 <> na Primary Assembly 40356 na scf_129 unplaced-scaffold na na WNMI01000079.1 <> na Primary Assembly 40216 na scf_130 unplaced-scaffold na na WNMI01000080.1 <> na Primary Assembly 39911 na scf_131 unplaced-scaffold na na WNMI01000081.1 <> na Primary Assembly 39076 na scf_132 unplaced-scaffold na na WNMI01000082.1 <> na Primary Assembly 38503 na scf_133 unplaced-scaffold na na WNMI01000083.1 <> na Primary Assembly 37065 na scf_134 unplaced-scaffold na na WNMI01000084.1 <> na Primary Assembly 34596 na scf_135 unplaced-scaffold na na WNMI01000085.1 <> na Primary Assembly 34231 na scf_136 unplaced-scaffold na na WNMI01000086.1 <> na Primary Assembly 33990 na scf_137 unplaced-scaffold na na WNMI01000087.1 <> na Primary Assembly 32053 na scf_138 unplaced-scaffold na na WNMI01000088.1 <> na Primary Assembly 31186 na scf_139 unplaced-scaffold na na WNMI01000089.1 <> na Primary Assembly 31104 na scf_140 unplaced-scaffold na na WNMI01000090.1 <> na Primary Assembly 30004 na scf_141 unplaced-scaffold na na WNMI01000091.1 <> na Primary Assembly 29982 na scf_142 unplaced-scaffold na na WNMI01000092.1 <> na Primary Assembly 29712 na scf_143 unplaced-scaffold na na WNMI01000093.1 <> na Primary Assembly 29507 na scf_144 unplaced-scaffold na na WNMI01000094.1 <> na Primary Assembly 29290 na scf_145 unplaced-scaffold na na WNMI01000095.1 <> na Primary Assembly 28914 na scf_146 unplaced-scaffold na na WNMI01000096.1 <> na Primary Assembly 28307 na scf_147 unplaced-scaffold na na WNMI01000097.1 <> na Primary Assembly 28321 na scf_148 unplaced-scaffold na na WNMI01000098.1 <> na Primary Assembly 26843 na scf_149 unplaced-scaffold na na WNMI01000099.1 <> na Primary Assembly 26268 na scf_150 unplaced-scaffold na na WNMI01000100.1 <> na Primary Assembly 26181 na scf_151 unplaced-scaffold na na WNMI01000101.1 <> na Primary Assembly 25986 na scf_152 unplaced-scaffold na na WNMI01000102.1 <> na Primary Assembly 24848 na scf_153 unplaced-scaffold na na WNMI01000103.1 <> na Primary Assembly 24751 na scf_154 unplaced-scaffold na na WNMI01000104.1 <> na Primary Assembly 24632 na scf_155 unplaced-scaffold na na WNMI01000105.1 <> na Primary Assembly 24599 na scf_156 unplaced-scaffold na na WNMI01000106.1 <> na Primary Assembly 24159 na scf_157 unplaced-scaffold na na WNMI01000107.1 <> na Primary Assembly 24017 na scf_158 unplaced-scaffold na na WNMI01000108.1 <> na Primary Assembly 23022 na scf_159 unplaced-scaffold na na WNMI01000109.1 <> na Primary Assembly 23011 na scf_160 unplaced-scaffold na na WNMI01000110.1 <> na Primary Assembly 22747 na scf_161 unplaced-scaffold na na WNMI01000111.1 <> na Primary Assembly 21415 na scf_162 unplaced-scaffold na na WNMI01000112.1 <> na Primary Assembly 21069 na scf_163 unplaced-scaffold na na WNMI01000113.1 <> na Primary Assembly 20988 na scf_164 unplaced-scaffold na na WNMI01000114.1 <> na Primary Assembly 20914 na scf_165 unplaced-scaffold na na WNMI01000115.1 <> na Primary Assembly 19814 na scf_166 unplaced-scaffold na na WNMI01000116.1 <> na Primary Assembly 19771 na scf_167 unplaced-scaffold na na WNMI01000117.1 <> na Primary Assembly 18749 na scf_168 unplaced-scaffold na na WNMI01000118.1 <> na Primary Assembly 17807 na scf_169 unplaced-scaffold na na WNMI01000119.1 <> na Primary Assembly 17717 na scf_170 unplaced-scaffold na na WNMI01000120.1 <> na Primary Assembly 17400 na scf_171 unplaced-scaffold na na WNMI01000121.1 <> na Primary Assembly 17194 na scf_172 unplaced-scaffold na na WNMI01000122.1 <> na Primary Assembly 17408 na scf_173 unplaced-scaffold na na WNMI01000123.1 <> na Primary Assembly 16775 na scf_174 unplaced-scaffold na na WNMI01000124.1 <> na Primary Assembly 16305 na scf_175 unplaced-scaffold na na WNMI01000125.1 <> na Primary Assembly 16066 na scf_176 unplaced-scaffold na na WNMI01000126.1 <> na Primary Assembly 15826 na scf_177 unplaced-scaffold na na WNMI01000127.1 <> na Primary Assembly 15746 na scf_178 unplaced-scaffold na na WNMI01000128.1 <> na Primary Assembly 15051 na scf_179 unplaced-scaffold na na WNMI01000129.1 <> na Primary Assembly 14563 na scf_180 unplaced-scaffold na na WNMI01000130.1 <> na Primary Assembly 13911 na scf_181 unplaced-scaffold na na WNMI01000131.1 <> na Primary Assembly 13506 na scf_182 unplaced-scaffold na na WNMI01000132.1 <> na Primary Assembly 13014 na scf_183 unplaced-scaffold na na WNMI01000133.1 <> na Primary Assembly 12827 na scf_184 unplaced-scaffold na na WNMI01000134.1 <> na Primary Assembly 12099 na scf_185 unplaced-scaffold na na WNMI01000135.1 <> na Primary Assembly 11806 na scf_186 unplaced-scaffold na na WNMI01000136.1 <> na Primary Assembly 11637 na scf_187 unplaced-scaffold na na WNMI01000137.1 <> na Primary Assembly 11482 na scf_188 unplaced-scaffold na na WNMI01000138.1 <> na Primary Assembly 11138 na scf_189 unplaced-scaffold na na WNMI01000139.1 <> na Primary Assembly 10491 na scf_190 unplaced-scaffold na na WNMI01000140.1 <> na Primary Assembly 9997 na scf_191 unplaced-scaffold na na WNMI01000141.1 <> na Primary Assembly 9909 na scf_192 unplaced-scaffold na na WNMI01000142.1 <> na Primary Assembly 9004 na scf_193 unplaced-scaffold na na WNMI01000143.1 <> na Primary Assembly 8978 na scf_194 unplaced-scaffold na na WNMI01000144.1 <> na Primary Assembly 8807 na scf_195 unplaced-scaffold na na WNMI01000145.1 <> na Primary Assembly 8528 na scf_196 unplaced-scaffold na na WNMI01000146.1 <> na Primary Assembly 8426 na scf_197 unplaced-scaffold na na WNMI01000147.1 <> na Primary Assembly 8143 na scf_198 unplaced-scaffold na na WNMI01000148.1 <> na Primary Assembly 7975 na scf_199 unplaced-scaffold na na WNMI01000149.1 <> na Primary Assembly 7874 na scf_200 unplaced-scaffold na na WNMI01000150.1 <> na Primary Assembly 7870 na scf_201 unplaced-scaffold na na WNMI01000151.1 <> na Primary Assembly 7865 na scf_202 unplaced-scaffold na na WNMI01000152.1 <> na Primary Assembly 7639 na scf_203 unplaced-scaffold na na WNMI01000153.1 <> na Primary Assembly 6568 na scf_204 unplaced-scaffold na na WNMI01000154.1 <> na Primary Assembly 6344 na scf_205 unplaced-scaffold na na WNMI01000155.1 <> na Primary Assembly 6145 na scf_206 unplaced-scaffold na na WNMI01000156.1 <> na Primary Assembly 5868 na scf_207 unplaced-scaffold na na WNMI01000157.1 <> na Primary Assembly 5755 na scf_208 unplaced-scaffold na na WNMI01000158.1 <> na Primary Assembly 4936 na scf_209 unplaced-scaffold na na WNMI01000159.1 <> na Primary Assembly 2314 na scf_210 unplaced-scaffold na na WNMI01000160.1 <> na Primary Assembly 2213 na scf_211 unplaced-scaffold na na WNMI01000161.1 <> na Primary Assembly 711 na scf_212 unplaced-scaffold na na WNMI01000162.1 <> na Primary Assembly 5813 na scf_213 unplaced-scaffold na na WNMI01000163.1 <> na Primary Assembly 396152 na scf_214 unplaced-scaffold na na WNMI01000164.1 <> na Primary Assembly 415540 na scf_215 unplaced-scaffold na na WNMI01000165.1 <> na Primary Assembly 286294 na scf_216 unplaced-scaffold na na WNMI01000166.1 <> na Primary Assembly 266529 na scf_217 unplaced-scaffold na na WNMI01000167.1 <> na Primary Assembly 250586 na scf_218 unplaced-scaffold na na WNMI01000168.1 <> na Primary Assembly 220922 na scf_219 unplaced-scaffold na na WNMI01000169.1 <> na Primary Assembly 207788 na scf_220 unplaced-scaffold na na WNMI01000170.1 <> na Primary Assembly 204688 na scf_221 unplaced-scaffold na na WNMI01000171.1 <> na Primary Assembly 203379 na scf_222 unplaced-scaffold na na WNMI01000172.1 <> na Primary Assembly 194808 na scf_223 unplaced-scaffold na na WNMI01000173.1 <> na Primary Assembly 178978 na scf_224 unplaced-scaffold na na WNMI01000174.1 <> na Primary Assembly 177671 na scf_225 unplaced-scaffold na na WNMI01000175.1 <> na Primary Assembly 171348 na scf_226 unplaced-scaffold na na WNMI01000176.1 <> na Primary Assembly 166135 na scf_227 unplaced-scaffold na na WNMI01000177.1 <> na Primary Assembly 160980 na scf_228 unplaced-scaffold na na WNMI01000178.1 <> na Primary Assembly 158417 na scf_229 unplaced-scaffold na na WNMI01000179.1 <> na Primary Assembly 120304 na scf_230 unplaced-scaffold na na WNMI01000180.1 <> na Primary Assembly 115035 na bCygOlo1_MT assembled-molecule MT Mitochondrion CM020139.1 <> na non-nuclear 16733 na