# Assembly name: bMerNub1.pri # Organism name: Merops nubicus (carmine bee-eater) # Isolate: bMerNub1 # Sex: female # Taxid: 57421 # BioSample: SAMN12621035 # BioProject: PRJNA561894 # Submitter: Vertebrate Genomes Project # Date: 2019-12-31 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: WNMU01 # Assembly method: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 2.0.2; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-08-15; VGP assembly pipeline individual v. 1.5 # Expected final version: no # Genome coverage: 60.12x # Sequencing technology: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # GenBank assembly accession: GCA_009819595.1 # Linked assembly: GCA_009819585.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009819625.1 Primary Assembly ## GCA_009819635.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Super_scaffold_1 assembled-molecule 1 Chromosome CM020380.1 <> na Primary Assembly 80186833 na Super_scaffold_3 assembled-molecule 2 Chromosome CM020381.1 <> na Primary Assembly 75343401 na Super_scaffold_4 assembled-molecule 3 Chromosome CM020382.1 <> na Primary Assembly 71733751 na Super_scaffold_5 assembled-molecule 4 Chromosome CM020383.1 <> na Primary Assembly 63715286 na Super_scaffold_6 assembled-molecule 5 Chromosome CM020384.1 <> na Primary Assembly 63096317 na Super_scaffold_7 assembled-molecule 6 Chromosome CM020385.1 <> na Primary Assembly 60843516 na Super_scaffold_8 assembled-molecule 7 Chromosome CM020386.1 <> na Primary Assembly 50894559 na Super_scaffold_10 assembled-molecule 8 Chromosome CM020387.1 <> na Primary Assembly 49132790 na Super_scaffold_9 assembled-molecule 9 Chromosome CM020388.1 <> na Primary Assembly 48979692 na Super_scaffold_11 assembled-molecule 10 Chromosome CM020389.1 <> na Primary Assembly 47935011 na Super_scaffold_12 assembled-molecule 11 Chromosome CM020390.1 <> na Primary Assembly 43998339 na Super_scaffold_13 assembled-molecule 12 Chromosome CM020391.1 <> na Primary Assembly 43611853 na Super_scaffold_14 assembled-molecule 13 Chromosome CM020392.1 <> na Primary Assembly 43371974 na Super_scaffold_15 assembled-molecule 14 Chromosome CM020393.1 <> na Primary Assembly 42743831 na Super_scaffold_16 assembled-molecule 15 Chromosome CM020394.1 <> na Primary Assembly 38038150 na Super_scaffold_17 assembled-molecule 16 Chromosome CM020395.1 <> na Primary Assembly 37598585 na Super_scaffold_19 assembled-molecule 17 Chromosome CM020396.1 <> na Primary Assembly 28670679 na Super_scaffold_18 assembled-molecule 18 Chromosome CM020397.1 <> na Primary Assembly 23612523 na Super_scaffold_20 assembled-molecule 19 Chromosome CM020398.1 <> na Primary Assembly 19777913 na Super_scaffold_23 assembled-molecule 20 Chromosome CM020399.1 <> na Primary Assembly 18641447 na Super_scaffold_21 assembled-molecule 21 Chromosome CM020400.1 <> na Primary Assembly 17189439 na Super_scaffold_24 assembled-molecule 22 Chromosome CM020401.1 <> na Primary Assembly 12982148 na Super_scaffold_25 assembled-molecule 23 Chromosome CM020402.1 <> na Primary Assembly 12650627 na Super_scaffold_26 assembled-molecule 24 Chromosome CM020403.1 <> na Primary Assembly 8879749 na Super_scaffold_28 assembled-molecule 25 Chromosome CM020404.1 <> na Primary Assembly 8336564 na Super_scaffold_22 assembled-molecule 26 Chromosome CM020405.1 <> na Primary Assembly 7411940 na Super_scaffold_27 assembled-molecule 27 Chromosome CM020406.1 <> na Primary Assembly 7338921 na Super_scaffold_30 assembled-molecule 28 Chromosome CM020407.1 <> na Primary Assembly 7188891 na Super_scaffold_29 assembled-molecule 29 Chromosome CM020408.1 <> na Primary Assembly 6573002 na Super_scaffold_34 assembled-molecule 30 Chromosome CM020409.1 <> na Primary Assembly 6288221 na Super_scaffold_31 assembled-molecule 31 Chromosome CM020410.1 <> na Primary Assembly 6268309 na Super_scaffold_33 assembled-molecule 32 Chromosome CM020411.1 <> na Primary Assembly 2423476 na Super_scaffold_35 assembled-molecule 33 Chromosome CM020412.1 <> na Primary Assembly 1025373 na Super_scaffold_36 assembled-molecule 34 Chromosome CM020413.1 <> na Primary Assembly 492839 na Super_scaffold_32 assembled-molecule W Chromosome CM020415.1 <> na Primary Assembly 5150650 na Super_scaffold_2 assembled-molecule Z Chromosome CM020414.1 <> na Primary Assembly 81488222 na scaffold_100_arrow_ctg1 unplaced-scaffold na na WNMU01000037.1 <> na Primary Assembly 46866 na scaffold_101_arrow_ctg1 unplaced-scaffold na na WNMU01000038.1 <> na Primary Assembly 44604 na scaffold_102_arrow_ctg1 unplaced-scaffold na na WNMU01000039.1 <> na Primary Assembly 44787 na scaffold_103_arrow_ctg1 unplaced-scaffold na na WNMU01000040.1 <> na Primary Assembly 43336 na scaffold_104_arrow_ctg1 unplaced-scaffold na na WNMU01000041.1 <> na Primary Assembly 43579 na scaffold_106_arrow_ctg1 unplaced-scaffold na na WNMU01000042.1 <> na Primary Assembly 43033 na scaffold_107_arrow_ctg1 unplaced-scaffold na na WNMU01000043.1 <> na Primary Assembly 38828 na scaffold_108_arrow_ctg1 unplaced-scaffold na na WNMU01000044.1 <> na Primary Assembly 36613 na scaffold_109_arrow_ctg1 unplaced-scaffold na na WNMU01000045.1 <> na Primary Assembly 34199 na scaffold_110_arrow_ctg1 unplaced-scaffold na na WNMU01000046.1 <> na Primary Assembly 33300 na scaffold_111_arrow_ctg1 unplaced-scaffold na na WNMU01000047.1 <> na Primary Assembly 33154 na scaffold_112_arrow_ctg1 unplaced-scaffold na na WNMU01000048.1 <> na Primary Assembly 32334 na scaffold_113_arrow_ctg1 unplaced-scaffold na na WNMU01000049.1 <> na Primary Assembly 31389 na scaffold_114_arrow_ctg1 unplaced-scaffold na na WNMU01000050.1 <> na Primary Assembly 30931 na scaffold_115_arrow_ctg1 unplaced-scaffold na na WNMU01000051.1 <> na Primary Assembly 30208 na scaffold_116_arrow_ctg1 unplaced-scaffold na na WNMU01000052.1 <> na Primary Assembly 29896 na scaffold_117_arrow_ctg1 unplaced-scaffold na na WNMU01000053.1 <> na Primary Assembly 29543 na scaffold_118_arrow_ctg1 unplaced-scaffold na na WNMU01000054.1 <> na Primary Assembly 26777 na scaffold_119_arrow_ctg1 unplaced-scaffold na na WNMU01000055.1 <> na Primary Assembly 26617 na scaffold_120_arrow_ctg1 unplaced-scaffold na na WNMU01000056.1 <> na Primary Assembly 26130 na scaffold_121_arrow_ctg1 unplaced-scaffold na na WNMU01000057.1 <> na Primary Assembly 26013 na scaffold_122_arrow_ctg1 unplaced-scaffold na na WNMU01000058.1 <> na Primary Assembly 25562 na scaffold_123_arrow_ctg1 unplaced-scaffold na na WNMU01000059.1 <> na Primary Assembly 25382 na scaffold_124_arrow_ctg1 unplaced-scaffold na na WNMU01000060.1 <> na Primary Assembly 24989 na scaffold_125_arrow_ctg1 unplaced-scaffold na na WNMU01000061.1 <> na Primary Assembly 24162 na scaffold_126_arrow_ctg1 unplaced-scaffold na na WNMU01000062.1 <> na Primary Assembly 22662 na scaffold_127_arrow_ctg1 unplaced-scaffold na na WNMU01000063.1 <> na Primary Assembly 22548 na scaffold_128_arrow_ctg1 unplaced-scaffold na na WNMU01000064.1 <> na Primary Assembly 22166 na scaffold_129_arrow_ctg1 unplaced-scaffold na na WNMU01000065.1 <> na Primary Assembly 21518 na scaffold_130_arrow_ctg1 unplaced-scaffold na na WNMU01000066.1 <> na Primary Assembly 21117 na scaffold_131_arrow_ctg1 unplaced-scaffold na na WNMU01000067.1 <> na Primary Assembly 20771 na scaffold_132_arrow_ctg1 unplaced-scaffold na na WNMU01000068.1 <> na Primary Assembly 20772 na scaffold_133_arrow_ctg1 unplaced-scaffold na na WNMU01000069.1 <> na Primary Assembly 20691 na scaffold_134_arrow_ctg1 unplaced-scaffold na na WNMU01000070.1 <> na Primary Assembly 16943 na scaffold_135_arrow_ctg1 unplaced-scaffold na na WNMU01000071.1 <> na Primary Assembly 10742 na scaffold_136_arrow_ctg1 unplaced-scaffold na na WNMU01000072.1 <> na Primary Assembly 7822 na scaffold_137_arrow_ctg1 unplaced-scaffold na na WNMU01000073.1 <> na Primary Assembly 6502 na scaffold_48_arrow_ctg1 unplaced-scaffold na na WNMU01000074.1 <> na Primary Assembly 414493 na scaffold_50_arrow_ctg1 unplaced-scaffold na na WNMU01000075.1 <> na Primary Assembly 316177 na scaffold_52_arrow_ctg1 unplaced-scaffold na na WNMU01000076.1 <> na Primary Assembly 278707 na scaffold_55_arrow_ctg1 unplaced-scaffold na na WNMU01000077.1 <> na Primary Assembly 273670 na scaffold_59_arrow_ctg1 unplaced-scaffold na na WNMU01000078.1 <> na Primary Assembly 207894 na scaffold_61_arrow_ctg1 unplaced-scaffold na na WNMU01000079.1 <> na Primary Assembly 185320 na scaffold_62_arrow_ctg1 unplaced-scaffold na na WNMU01000080.1 <> na Primary Assembly 181078 na scaffold_63_arrow_ctg1 unplaced-scaffold na na WNMU01000081.1 <> na Primary Assembly 173121 na scaffold_64_arrow_ctg1 unplaced-scaffold na na WNMU01000082.1 <> na Primary Assembly 166958 na scaffold_66_arrow_ctg1 unplaced-scaffold na na WNMU01000083.1 <> na Primary Assembly 159178 na scaffold_67_arrow_ctg1 unplaced-scaffold na na WNMU01000084.1 <> na Primary Assembly 156259 na scaffold_68_arrow_ctg1 unplaced-scaffold na na WNMU01000085.1 <> na Primary Assembly 156000 na scaffold_69_arrow_ctg1 unplaced-scaffold na na WNMU01000086.1 <> na Primary Assembly 138474 na scaffold_70_arrow_ctg1 unplaced-scaffold na na WNMU01000087.1 <> na Primary Assembly 133369 na scaffold_71_arrow_ctg1 unplaced-scaffold na na WNMU01000088.1 <> na Primary Assembly 128070 na scaffold_72_arrow_ctg1 unplaced-scaffold na na WNMU01000089.1 <> na Primary Assembly 128565 na scaffold_73_arrow_ctg1 unplaced-scaffold na na WNMU01000090.1 <> na Primary Assembly 119896 na scaffold_74_arrow_ctg1 unplaced-scaffold na na WNMU01000091.1 <> na Primary Assembly 112400 na scaffold_75_arrow_ctg1 unplaced-scaffold na na WNMU01000092.1 <> na Primary Assembly 108768 na scaffold_78_arrow_ctg1 unplaced-scaffold na na WNMU01000093.1 <> na Primary Assembly 103184 na scaffold_79_arrow_ctg1 unplaced-scaffold na na WNMU01000094.1 <> na Primary Assembly 95234 na scaffold_81_arrow_ctg1 unplaced-scaffold na na WNMU01000095.1 <> na Primary Assembly 94404 na scaffold_83_arrow_ctg1 unplaced-scaffold na na WNMU01000096.1 <> na Primary Assembly 92819 na scaffold_86_arrow_ctg1 unplaced-scaffold na na WNMU01000097.1 <> na Primary Assembly 80034 na scaffold_87_arrow_ctg1 unplaced-scaffold na na WNMU01000098.1 <> na Primary Assembly 77849 na scaffold_88_arrow_ctg1 unplaced-scaffold na na WNMU01000099.1 <> na Primary Assembly 74353 na scaffold_89_arrow_ctg1 unplaced-scaffold na na WNMU01000100.1 <> na Primary Assembly 67985 na scaffold_90_arrow_ctg1 unplaced-scaffold na na WNMU01000101.1 <> na Primary Assembly 65458 na scaffold_91_arrow_ctg1 unplaced-scaffold na na WNMU01000102.1 <> na Primary Assembly 63419 na scaffold_92_arrow_ctg1 unplaced-scaffold na na WNMU01000103.1 <> na Primary Assembly 56879 na scaffold_94_arrow_ctg1 unplaced-scaffold na na WNMU01000104.1 <> na Primary Assembly 56379 na scaffold_96_arrow_ctg1 unplaced-scaffold na na WNMU01000105.1 <> na Primary Assembly 54680 na scaffold_97_arrow_ctg1 unplaced-scaffold na na WNMU01000106.1 <> na Primary Assembly 52079 na scaffold_98_arrow_ctg1 unplaced-scaffold na na WNMU01000107.1 <> na Primary Assembly 51837 na scaffold_99_arrow_ctg1 unplaced-scaffold na na WNMU01000108.1 <> na Primary Assembly 51218 na bMerNub1_MT assembled-molecule MT Mitochondrion CM020464.1 <> na non-nuclear 18687 na