# Assembly name: bCarCri1.pri # Organism name: Cariama cristata (Red-legged seriema) # Isolate: bCarCri1 # Sex: female # Taxid: 54380 # BioSample: SAMN12614807 # BioProject: PRJNA561892 # Submitter: Vertebrate Genomes Project # Date: 2019-12-31 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: WNMO01 # Assembly method: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-09-16; VGP assembly pipeline individual v. 1.5 # Expected final version: no # Genome coverage: 50.93x # Sequencing technology: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # GenBank assembly accession: GCA_009819825.1 # Linked assembly: GCA_009819485.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009819865.1 Primary Assembly ## GCA_009819875.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold_2_arrow_ctg1 assembled-molecule 1 Chromosome CM020248.1 <> na Primary Assembly 50158509 na Super_Scaffold_2 assembled-molecule 2 Chromosome CM020249.1 <> na Primary Assembly 48853792 na scaffold_3_arrow_ctg1 assembled-molecule 3 Chromosome CM020250.1 <> na Primary Assembly 47620032 na scaffold_4_arrow_ctg1 assembled-molecule 4 Chromosome CM020251.1 <> na Primary Assembly 47313547 na Super_Scaffold_3 assembled-molecule 5 Chromosome CM020252.1 <> na Primary Assembly 45053423 na scaffold_7_arrow_ctg1 assembled-molecule 6 Chromosome CM020253.1 <> na Primary Assembly 42616983 na scaffold_8_arrow_ctg1 assembled-molecule 7 Chromosome CM020254.1 <> na Primary Assembly 41945511 na scaffold_9_arrow_ctg1 assembled-molecule 8 Chromosome CM020255.1 <> na Primary Assembly 37909001 na Super_Scaffold_19 assembled-molecule 9 Chromosome CM020256.1 <> na Primary Assembly 37389531 na scaffold_11_arrow_ctg1 assembled-molecule 10 Chromosome CM020257.1 <> na Primary Assembly 31823965 na Super_Scaffold_4 assembled-molecule 11 Chromosome CM020258.1 <> na Primary Assembly 31818961 na scaffold_12_arrow_ctg1 assembled-molecule 12 Chromosome CM020259.1 <> na Primary Assembly 31238840 na scaffold_14_arrow_ctg1 assembled-molecule 13 Chromosome CM020260.1 <> na Primary Assembly 30176635 na scaffold_15_arrow_ctg1 assembled-molecule 14 Chromosome CM020261.1 <> na Primary Assembly 27153115 na Super_Scaffold_13 assembled-molecule 15 Chromosome CM020262.1 <> na Primary Assembly 26816855 na Super_Scaffold_5 assembled-molecule 16 Chromosome CM020263.1 <> na Primary Assembly 26155663 na Super_Scaffold_6 assembled-molecule 17 Chromosome CM020264.1 <> na Primary Assembly 25531620 na scaffold_18_arrow_ctg1 assembled-molecule 18 Chromosome CM020265.1 <> na Primary Assembly 24121241 na scaffold_19_arrow_ctg1 assembled-molecule 19 Chromosome CM020266.1 <> na Primary Assembly 23620085 na Super_Scaffold_8 assembled-molecule 20 Chromosome CM020267.1 <> na Primary Assembly 22436229 na Super_Scaffold_7 assembled-molecule 21 Chromosome CM020268.1 <> na Primary Assembly 22218802 na Super_Scaffold_9 assembled-molecule 22 Chromosome CM020269.1 <> na Primary Assembly 22186025 na Super_Scaffold_11 assembled-molecule 23 Chromosome CM020270.1 <> na Primary Assembly 21456571 na Super_Scaffold_10 assembled-molecule 24 Chromosome CM020271.1 <> na Primary Assembly 20592573 na scaffold_24_arrow_ctg1 assembled-molecule 25 Chromosome CM020272.1 <> na Primary Assembly 20392918 na scaffold_25_arrow_ctg1 assembled-molecule 26 Chromosome CM020273.1 <> na Primary Assembly 20063462 na Super_Scaffold_12 assembled-molecule 27 Chromosome CM020274.1 <> na Primary Assembly 19550563 na scaffold_26_arrow_ctg1 assembled-molecule 28 Chromosome CM020275.1 <> na Primary Assembly 18837271 na scaffold_27_arrow_ctg1 assembled-molecule 29 Chromosome CM020276.1 <> na Primary Assembly 18591359 na scaffold_29_arrow_ctg1 assembled-molecule 30 Chromosome CM020277.1 <> na Primary Assembly 17794397 na scaffold_30_arrow_ctg1 assembled-molecule 31 Chromosome CM020278.1 <> na Primary Assembly 17071899 na scaffold_32_arrow_ctg1 assembled-molecule 32 Chromosome CM020279.1 <> na Primary Assembly 15512073 na scaffold_33_arrow_ctg1 assembled-molecule 33 Chromosome CM020280.1 <> na Primary Assembly 15326017 na scaffold_34_arrow_ctg1 assembled-molecule 34 Chromosome CM020281.1 <> na Primary Assembly 15295261 na scaffold_35_arrow_ctg1 assembled-molecule 35 Chromosome CM020282.1 <> na Primary Assembly 14400081 na scaffold_37_arrow_ctg1 assembled-molecule 36 Chromosome CM020283.1 <> na Primary Assembly 13514148 na scaffold_38_arrow_ctg1 assembled-molecule 37 Chromosome CM020284.1 <> na Primary Assembly 13137949 na scaffold_39_arrow_ctg1 assembled-molecule 38 Chromosome CM020285.1 <> na Primary Assembly 13092986 na scaffold_40_arrow_ctg1 assembled-molecule 39 Chromosome CM020286.1 <> na Primary Assembly 12968468 na scaffold_43_arrow_ctg1 assembled-molecule 40 Chromosome CM020287.1 <> na Primary Assembly 9483277 na scaffold_44_arrow_ctg1 assembled-molecule 41 Chromosome CM020288.1 <> na Primary Assembly 8608496 na scaffold_45_arrow_ctg1 assembled-molecule 42 Chromosome CM020289.1 <> na Primary Assembly 8235930 na scaffold_48_arrow_ctg1 assembled-molecule 43 Chromosome CM020290.1 <> na Primary Assembly 7476797 na Super_Scaffold_14 assembled-molecule 44 Chromosome CM020291.1 <> na Primary Assembly 7001204 na Super_Scaffold_16 assembled-molecule 45 Chromosome CM020292.1 <> na Primary Assembly 6307729 na Super_Scaffold_15 assembled-molecule 46 Chromosome CM020293.1 <> na Primary Assembly 6146889 na Super_Scaffold_17 assembled-molecule 47 Chromosome CM020294.1 <> na Primary Assembly 3059673 na scaffold_60_arrow_ctg1 assembled-molecule 48 Chromosome CM020295.1 <> na Primary Assembly 2544142 na Super_Scaffold_18 assembled-molecule 49 Chromosome CM020296.1 <> na Primary Assembly 1495887 na Super_Scaffold_20 assembled-molecule 50 Chromosome CM020297.1 <> na Primary Assembly 1098693 na Super_Scaffold_21 assembled-molecule W Chromosome CM020299.1 <> na Primary Assembly 13730351 na Super_Scaffold_1 assembled-molecule Z Chromosome CM020298.1 <> na Primary Assembly 88027262 na scaffold_75_arrow_ctg1 unlocalized-scaffold 48 Chromosome WNMO01000096.1 <> na Primary Assembly 995015 na scaffold_50_arrow_ctg1 unlocalized-scaffold W Chromosome WNMO01000085.1 <> na Primary Assembly 5760206 na scaffold_57_arrow_ctg1 unlocalized-scaffold W Chromosome WNMO01000088.1 <> na Primary Assembly 2987987 na scaffold_64_arrow_ctg1 unlocalized-scaffold W Chromosome WNMO01000092.1 <> na Primary Assembly 2024561 na Super_Scaffold_22 unlocalized-scaffold W Chromosome WNMO01000093.1 <> na Primary Assembly 3943167 na scaffold_100_arrow_ctg1 unplaced-scaffold na na WNMO01000001.1 <> na Primary Assembly 165063 na scaffold_101_arrow_ctg1 unplaced-scaffold na na WNMO01000002.1 <> na Primary Assembly 162234 na scaffold_105_arrow_ctg1 unplaced-scaffold na na WNMO01000003.1 <> na Primary Assembly 104700 na scaffold_106_arrow_ctg1 unplaced-scaffold na na WNMO01000004.1 <> na Primary Assembly 101684 na scaffold_107_arrow_ctg1 unplaced-scaffold na na WNMO01000005.1 <> na Primary Assembly 95888 na scaffold_108_arrow_ctg1 unplaced-scaffold na na WNMO01000006.1 <> na Primary Assembly 93238 na scaffold_109_arrow_ctg1 unplaced-scaffold na na WNMO01000007.1 <> na Primary Assembly 92385 na scaffold_110_arrow_ctg1 unplaced-scaffold na na WNMO01000009.1 <> na Primary Assembly 71989 na scaffold_111_arrow_ctg1 unplaced-scaffold na na WNMO01000010.1 <> na Primary Assembly 68917 na scaffold_112_arrow_ctg1 unplaced-scaffold na na WNMO01000011.1 <> na Primary Assembly 67559 na scaffold_113_arrow_ctg1 unplaced-scaffold na na WNMO01000012.1 <> na Primary Assembly 63013 na scaffold_114_arrow_ctg1 unplaced-scaffold na na WNMO01000013.1 <> na Primary Assembly 58310 na scaffold_115_arrow_ctg1 unplaced-scaffold na na WNMO01000014.1 <> na Primary Assembly 58238 na scaffold_116_arrow_ctg1 unplaced-scaffold na na WNMO01000015.1 <> na Primary Assembly 54996 na scaffold_117_arrow_ctg1 unplaced-scaffold na na WNMO01000016.1 <> na Primary Assembly 49811 na scaffold_119_arrow_ctg1 unplaced-scaffold na na WNMO01000017.1 <> na Primary Assembly 45179 na scaffold_120_arrow_ctg1 unplaced-scaffold na na WNMO01000019.1 <> na Primary Assembly 41272 na scaffold_121_arrow_ctg1 unplaced-scaffold na na WNMO01000020.1 <> na Primary Assembly 40993 na scaffold_122_arrow_ctg1 unplaced-scaffold na na WNMO01000021.1 <> na Primary Assembly 40428 na scaffold_123_arrow_ctg1 unplaced-scaffold na na WNMO01000022.1 <> na Primary Assembly 39611 na scaffold_124_arrow_ctg1 unplaced-scaffold na na WNMO01000023.1 <> na Primary Assembly 39460 na scaffold_125_arrow_ctg1 unplaced-scaffold na na WNMO01000024.1 <> na Primary Assembly 38816 na scaffold_126_arrow_ctg1 unplaced-scaffold na na WNMO01000025.1 <> na Primary Assembly 38156 na scaffold_127_arrow_ctg1 unplaced-scaffold na na WNMO01000026.1 <> na Primary Assembly 37459 na scaffold_128_arrow_ctg1 unplaced-scaffold na na WNMO01000027.1 <> na Primary Assembly 36108 na scaffold_129_arrow_ctg1 unplaced-scaffold na na WNMO01000028.1 <> na Primary Assembly 32562 na scaffold_130_arrow_ctg1 unplaced-scaffold na na WNMO01000030.1 <> na Primary Assembly 31622 na scaffold_131_arrow_ctg1 unplaced-scaffold na na WNMO01000031.1 <> na Primary Assembly 29709 na scaffold_132_arrow_ctg1 unplaced-scaffold na na WNMO01000032.1 <> na Primary Assembly 28840 na scaffold_133_arrow_ctg1 unplaced-scaffold na na WNMO01000033.1 <> na Primary Assembly 26728 na scaffold_134_arrow_ctg1 unplaced-scaffold na na WNMO01000034.1 <> na Primary Assembly 26563 na scaffold_135_arrow_ctg1 unplaced-scaffold na na WNMO01000035.1 <> na Primary Assembly 25467 na scaffold_136_arrow_ctg1 unplaced-scaffold na na WNMO01000036.1 <> na Primary Assembly 24785 na scaffold_137_arrow_ctg1 unplaced-scaffold na na WNMO01000037.1 <> na Primary Assembly 23990 na scaffold_138_arrow_ctg1 unplaced-scaffold na na WNMO01000038.1 <> na Primary Assembly 23648 na scaffold_139_arrow_ctg1 unplaced-scaffold na na WNMO01000039.1 <> na Primary Assembly 23661 na scaffold_140_arrow_ctg1 unplaced-scaffold na na WNMO01000041.1 <> na Primary Assembly 22335 na scaffold_141_arrow_ctg1 unplaced-scaffold na na WNMO01000042.1 <> na Primary Assembly 20792 na scaffold_142_arrow_ctg1 unplaced-scaffold na na WNMO01000043.1 <> na Primary Assembly 16816 na scaffold_143_arrow_ctg1 unplaced-scaffold na na WNMO01000044.1 <> na Primary Assembly 7930 na scaffold_144_arrow_ctg1 unplaced-scaffold na na WNMO01000045.1 <> na Primary Assembly 2384 na scaffold_145_arrow_ctg1 unplaced-scaffold na na WNMO01000046.1 <> na Primary Assembly 2034 na scaffold_49_arrow_ctg1 unplaced-scaffold na na WNMO01000082.1 <> na Primary Assembly 134544 na scaffold_85_arrow_ctg1 unplaced-scaffold na na WNMO01000099.1 <> na Primary Assembly 394809 na scaffold_88_arrow_ctg1 unplaced-scaffold na na WNMO01000100.1 <> na Primary Assembly 378493 na scaffold_90_arrow_ctg1 unplaced-scaffold na na WNMO01000102.1 <> na Primary Assembly 243983 na scaffold_92_arrow_ctg1 unplaced-scaffold na na WNMO01000103.1 <> na Primary Assembly 313327 na scaffold_94_arrow_ctg1 unplaced-scaffold na na WNMO01000104.1 <> na Primary Assembly 239860 na scaffold_95_arrow_ctg1 unplaced-scaffold na na WNMO01000105.1 <> na Primary Assembly 197460 na scaffold_96_arrow_ctg1 unplaced-scaffold na na WNMO01000106.1 <> na Primary Assembly 192492 na scaffold_98_arrow_ctg1 unplaced-scaffold na na WNMO01000107.1 <> na Primary Assembly 186854 na scaffold_99_arrow_ctg1 unplaced-scaffold na na WNMO01000108.1 <> na Primary Assembly 183253 na bCarCri1_MT assembled-molecule MT Mitochondrion CM020379.1 <> na non-nuclear 21618 na