# Assembly name: mBalMus1.v2 # Organism name: Balaenoptera musculus (Blue whale) # Isolate: JJ_BM4_2016_0621 # Sex: male # Taxid: 9771 # BioSample: SAMN12287136 # BioProject: PRJNA554522 # Submitter: G10K # Date: 2020-02-03 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: VNFC02 # Assembly method: FALCON v. 1.0.2; FALCON-Unzip v. 1.0.2; purge_haplotigs v. bitbucket 7.10.2018; scaff10x v. git 4.28.2018; Bionano Solve DLS v. 3.2.1; Salsa2 HiC v. 2.0; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-10-25; VGP standard assem # Expected final version: no # Genome coverage: 51.16x # Sequencing technology: PacBio Sequel I; Illumina NovaSeq; 10X Genomics chromium; Dovetail Genomics HiC # GenBank assembly accession: GCA_009873245.2 # Linked assembly: GCA_008658375.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009873255.2 Primary Assembly ## GCA_009873265.2 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Super_scaffold_1 assembled-molecule 1 Chromosome CM020941.1 <> na Primary Assembly 185157308 na Super_scaffold_11 assembled-molecule 2 Chromosome CM020942.1 <> na Primary Assembly 176072231 na Super_scaffold_3 assembled-molecule 3 Chromosome CM020943.1 <> na Primary Assembly 171879439 na Super_scaffold_6 assembled-molecule 4 Chromosome CM020944.1 <> na Primary Assembly 145217739 na Super_scaffold_9 assembled-molecule 5 Chromosome CM020945.1 <> na Primary Assembly 140799745 na Super_scaffold_10 assembled-molecule 6 Chromosome CM020946.1 <> na Primary Assembly 116686506 na Super_scaffold_19 assembled-molecule 7 Chromosome CM020947.1 <> na Primary Assembly 113670270 na Super_scaffold_4 assembled-molecule 8 Chromosome CM020948.1 <> na Primary Assembly 110470125 na Super_scaffold_5 assembled-molecule 9 Chromosome CM020949.1 <> na Primary Assembly 107551276 na Super_scaffold_14 assembled-molecule 10 Chromosome CM020950.1 <> na Primary Assembly 104923904 na Super_scaffold_7 assembled-molecule 11 Chromosome CM020951.1 <> na Primary Assembly 104095770 na Super_scaffold_17 assembled-molecule 12 Chromosome CM020952.1 <> na Primary Assembly 91686959 na Super_scaffold_22 assembled-molecule 13 Chromosome CM020953.1 <> na Primary Assembly 90777659 na Super_scaffold_16 assembled-molecule 14 Chromosome CM020954.1 <> na Primary Assembly 90457485 na Super_scaffold_18 assembled-molecule 15 Chromosome CM020955.1 <> na Primary Assembly 88610610 na Super_scaffold_2 assembled-molecule 16 Chromosome CM020956.1 <> na Primary Assembly 86440296 na Super_scaffold_20 assembled-molecule 17 Chromosome CM020957.1 <> na Primary Assembly 81249696 na Super_scaffold_12 assembled-molecule 18 Chromosome CM020958.1 <> na Primary Assembly 79721659 na Super_scaffold_15 assembled-molecule 19 Chromosome CM020959.1 <> na Primary Assembly 60794681 na Super_scaffold_13 assembled-molecule 20 Chromosome CM020960.1 <> na Primary Assembly 60500852 na Super_scaffold_21 assembled-molecule 21 Chromosome CM020961.1 <> na Primary Assembly 36476527 na Super_scaffold_8 assembled-molecule X Chromosome CM020962.1 <> na Primary Assembly 129330052 na Super_scaffold_23 assembled-molecule Y Chromosome CM020963.1 <> na Primary Assembly 2427530 na scaffold_100_arrow_ctg1 unplaced-scaffold na na VNFC02000024.1 <> na Primary Assembly 43245 na scaffold_101_arrow_ctg1 unplaced-scaffold na na VNFC02000025.1 <> na Primary Assembly 42862 na scaffold_102_arrow_ctg1 unplaced-scaffold na na VNFC02000026.1 <> na Primary Assembly 41596 na scaffold_103_arrow_ctg1 unplaced-scaffold na na VNFC02000027.1 <> na Primary Assembly 41704 na scaffold_104_arrow_ctg1 unplaced-scaffold na na VNFC02000028.1 <> na Primary Assembly 41010 na scaffold_105_arrow_ctg1 unplaced-scaffold na na VNFC02000029.1 <> na Primary Assembly 39805 na scaffold_106_arrow_ctg1 unplaced-scaffold na na VNFC02000030.1 <> na Primary Assembly 39300 na scaffold_107_arrow_ctg1 unplaced-scaffold na na VNFC02000031.1 <> na Primary Assembly 38399 na scaffold_108_arrow_ctg1 unplaced-scaffold na na VNFC02000032.1 <> na Primary Assembly 37772 na scaffold_109_arrow_ctg1 unplaced-scaffold na na VNFC02000033.1 <> na Primary Assembly 37309 na scaffold_110_arrow_ctg1 unplaced-scaffold na na VNFC02000034.1 <> na Primary Assembly 37603 na scaffold_111_arrow_ctg1 unplaced-scaffold na na VNFC02000035.1 <> na Primary Assembly 36953 na scaffold_112_arrow_ctg1 unplaced-scaffold na na VNFC02000036.1 <> na Primary Assembly 36232 na scaffold_113_arrow_ctg1 unplaced-scaffold na na VNFC02000037.1 <> na Primary Assembly 36088 na scaffold_114_arrow_ctg1 unplaced-scaffold na na VNFC02000038.1 <> na Primary Assembly 36105 na scaffold_115_arrow_ctg1 unplaced-scaffold na na VNFC02000039.1 <> na Primary Assembly 36034 na scaffold_116_arrow_ctg1 unplaced-scaffold na na VNFC02000040.1 <> na Primary Assembly 35504 na scaffold_117_arrow_ctg1 unplaced-scaffold na na VNFC02000041.1 <> na Primary Assembly 35455 na scaffold_118_arrow_ctg1 unplaced-scaffold na na VNFC02000042.1 <> na Primary Assembly 35402 na scaffold_119_arrow_ctg1 unplaced-scaffold na na VNFC02000043.1 <> na Primary Assembly 35252 na scaffold_120_arrow_ctg1 unplaced-scaffold na na VNFC02000044.1 <> na Primary Assembly 34460 na scaffold_121_arrow_ctg1 unplaced-scaffold na na VNFC02000045.1 <> na Primary Assembly 34447 na scaffold_122_arrow_ctg1 unplaced-scaffold na na VNFC02000046.1 <> na Primary Assembly 34006 na scaffold_123_arrow_ctg1 unplaced-scaffold na na VNFC02000047.1 <> na Primary Assembly 33942 na scaffold_124_arrow_ctg1 unplaced-scaffold na na VNFC02000048.1 <> na Primary Assembly 33588 na scaffold_125_arrow_ctg1 unplaced-scaffold na na VNFC02000049.1 <> na Primary Assembly 33401 na scaffold_126_arrow_ctg1 unplaced-scaffold na na VNFC02000050.1 <> na Primary Assembly 33307 na scaffold_127_arrow_ctg1 unplaced-scaffold na na VNFC02000051.1 <> na Primary Assembly 32670 na scaffold_128_arrow_ctg1 unplaced-scaffold na na VNFC02000052.1 <> na Primary Assembly 32610 na scaffold_129_arrow_ctg1 unplaced-scaffold na na VNFC02000053.1 <> na Primary Assembly 31690 na scaffold_130_arrow_ctg1 unplaced-scaffold na na VNFC02000054.1 <> na Primary Assembly 31229 na scaffold_131_arrow_ctg1 unplaced-scaffold na na VNFC02000055.1 <> na Primary Assembly 31080 na scaffold_132_arrow_ctg1 unplaced-scaffold na na VNFC02000056.1 <> na Primary Assembly 30867 na scaffold_133_arrow_ctg1 unplaced-scaffold na na VNFC02000057.1 <> na Primary Assembly 30796 na scaffold_134_arrow_ctg1 unplaced-scaffold na na VNFC02000058.1 <> na Primary Assembly 30108 na scaffold_135_arrow_ctg1 unplaced-scaffold na na VNFC02000059.1 <> na Primary Assembly 29993 na scaffold_136_arrow_ctg1 unplaced-scaffold na na VNFC02000060.1 <> na Primary Assembly 29730 na scaffold_137_arrow_ctg1 unplaced-scaffold na na VNFC02000061.1 <> na Primary Assembly 29502 na scaffold_138_arrow_ctg1 unplaced-scaffold na na VNFC02000062.1 <> na Primary Assembly 28687 na scaffold_139_arrow_ctg1 unplaced-scaffold na na VNFC02000063.1 <> na Primary Assembly 28476 na scaffold_140_arrow_ctg1 unplaced-scaffold na na VNFC02000064.1 <> na Primary Assembly 27894 na scaffold_141_arrow_ctg1 unplaced-scaffold na na VNFC02000065.1 <> na Primary Assembly 27194 na scaffold_142_arrow_ctg1 unplaced-scaffold na na VNFC02000066.1 <> na Primary Assembly 27044 na scaffold_143_arrow_ctg1 unplaced-scaffold na na VNFC02000067.1 <> na Primary Assembly 26796 na scaffold_144_arrow_ctg1 unplaced-scaffold na na VNFC02000068.1 <> na Primary Assembly 26759 na scaffold_145_arrow_ctg1 unplaced-scaffold na na VNFC02000069.1 <> na Primary Assembly 26721 na scaffold_146_arrow_ctg1 unplaced-scaffold na na VNFC02000070.1 <> na Primary Assembly 26527 na scaffold_147_arrow_ctg1 unplaced-scaffold na na VNFC02000071.1 <> na Primary Assembly 26171 na scaffold_148_arrow_ctg1 unplaced-scaffold na na VNFC02000072.1 <> na Primary Assembly 26090 na scaffold_149_arrow_ctg1 unplaced-scaffold na na VNFC02000073.1 <> na Primary Assembly 24981 na scaffold_150_arrow_ctg1 unplaced-scaffold na na VNFC02000074.1 <> na Primary Assembly 24212 na scaffold_151_arrow_ctg1 unplaced-scaffold na na VNFC02000075.1 <> na Primary Assembly 25585 na scaffold_152_arrow_ctg1 unplaced-scaffold na na VNFC02000076.1 <> na Primary Assembly 25221 na scaffold_153_arrow_ctg1 unplaced-scaffold na na VNFC02000077.1 <> na Primary Assembly 25081 na scaffold_154_arrow_ctg1 unplaced-scaffold na na VNFC02000078.1 <> na Primary Assembly 24858 na scaffold_155_arrow_ctg1 unplaced-scaffold na na VNFC02000079.1 <> na Primary Assembly 24591 na scaffold_156_arrow_ctg1 unplaced-scaffold na na VNFC02000080.1 <> na Primary Assembly 24330 na scaffold_157_arrow_ctg1 unplaced-scaffold na na VNFC02000081.1 <> na Primary Assembly 24329 na scaffold_158_arrow_ctg1 unplaced-scaffold na na VNFC02000082.1 <> na Primary Assembly 23985 na scaffold_159_arrow_ctg1 unplaced-scaffold na na VNFC02000083.1 <> na Primary Assembly 23069 na scaffold_160_arrow_ctg1 unplaced-scaffold na na VNFC02000084.1 <> na Primary Assembly 22438 na scaffold_161_arrow_ctg1 unplaced-scaffold na na VNFC02000085.1 <> na Primary Assembly 22303 na scaffold_162_arrow_ctg1 unplaced-scaffold na na VNFC02000086.1 <> na Primary Assembly 21115 na scaffold_163_arrow_ctg1 unplaced-scaffold na na VNFC02000087.1 <> na Primary Assembly 20793 na scaffold_164_arrow_ctg1 unplaced-scaffold na na VNFC02000088.1 <> na Primary Assembly 20703 na scaffold_165_arrow_ctg1 unplaced-scaffold na na VNFC02000089.1 <> na Primary Assembly 20579 na scaffold_166_arrow_ctg1 unplaced-scaffold na na VNFC02000090.1 <> na Primary Assembly 16970 na scaffold_167_arrow_ctg1 unplaced-scaffold na na VNFC02000091.1 <> na Primary Assembly 610 na scaffold_56_arrow_ctg1 unplaced-scaffold na na VNFC02000092.1 <> na Primary Assembly 414552 na scaffold_59_arrow_ctg1 unplaced-scaffold na na VNFC02000093.1 <> na Primary Assembly 230261 na scaffold_62_arrow_ctg1 unplaced-scaffold na na VNFC02000094.1 <> na Primary Assembly 172977 na scaffold_64_arrow_ctg1 unplaced-scaffold na na VNFC02000095.1 <> na Primary Assembly 126946 na scaffold_66_arrow_ctg1 unplaced-scaffold na na VNFC02000096.1 <> na Primary Assembly 101605 na scaffold_67_arrow_ctg1 unplaced-scaffold na na VNFC02000097.1 <> na Primary Assembly 95387 na scaffold_68_arrow_ctg1 unplaced-scaffold na na VNFC02000098.1 <> na Primary Assembly 94174 na scaffold_69_arrow_ctg1 unplaced-scaffold na na VNFC02000099.1 <> na Primary Assembly 77553 na scaffold_70_arrow_ctg1 unplaced-scaffold na na VNFC02000100.1 <> na Primary Assembly 70156 na scaffold_71_arrow_ctg1 unplaced-scaffold na na VNFC02000101.1 <> na Primary Assembly 67718 na scaffold_72_arrow_ctg1 unplaced-scaffold na na VNFC02000102.1 <> na Primary Assembly 65836 na scaffold_73_arrow_ctg1 unplaced-scaffold na na VNFC02000103.1 <> na Primary Assembly 62110 na scaffold_74_arrow_ctg1 unplaced-scaffold na na VNFC02000104.1 <> na Primary Assembly 59528 na scaffold_75_arrow_ctg1 unplaced-scaffold na na VNFC02000105.1 <> na Primary Assembly 58865 na scaffold_76_arrow_ctg1 unplaced-scaffold na na VNFC02000106.1 <> na Primary Assembly 57688 na scaffold_77_arrow_ctg1 unplaced-scaffold na na VNFC02000107.1 <> na Primary Assembly 57190 na scaffold_78_arrow_ctg1 unplaced-scaffold na na VNFC02000108.1 <> na Primary Assembly 57125 na scaffold_79_arrow_ctg1 unplaced-scaffold na na VNFC02000109.1 <> na Primary Assembly 57100 na scaffold_80_arrow_ctg1 unplaced-scaffold na na VNFC02000110.1 <> na Primary Assembly 57158 na scaffold_81_arrow_ctg1 unplaced-scaffold na na VNFC02000111.1 <> na Primary Assembly 57170 na scaffold_82_arrow_ctg1 unplaced-scaffold na na VNFC02000112.1 <> na Primary Assembly 56060 na scaffold_83_arrow_ctg1 unplaced-scaffold na na VNFC02000113.1 <> na Primary Assembly 54956 na scaffold_84_arrow_ctg1 unplaced-scaffold na na VNFC02000114.1 <> na Primary Assembly 54932 na scaffold_85_arrow_ctg1 unplaced-scaffold na na VNFC02000115.1 <> na Primary Assembly 53536 na scaffold_86_arrow_ctg1 unplaced-scaffold na na VNFC02000116.1 <> na Primary Assembly 52805 na scaffold_87_arrow_ctg1 unplaced-scaffold na na VNFC02000117.1 <> na Primary Assembly 52561 na scaffold_88_arrow_ctg1 unplaced-scaffold na na VNFC02000118.1 <> na Primary Assembly 51884 na scaffold_89_arrow_ctg1 unplaced-scaffold na na VNFC02000119.1 <> na Primary Assembly 50884 na scaffold_90_arrow_ctg1 unplaced-scaffold na na VNFC02000120.1 <> na Primary Assembly 50594 na scaffold_91_arrow_ctg1 unplaced-scaffold na na VNFC02000121.1 <> na Primary Assembly 50551 na scaffold_92_arrow_ctg1 unplaced-scaffold na na VNFC02000122.1 <> na Primary Assembly 50361 na scaffold_93_arrow_ctg1 unplaced-scaffold na na VNFC02000123.1 <> na Primary Assembly 50352 na scaffold_94_arrow_ctg1 unplaced-scaffold na na VNFC02000124.1 <> na Primary Assembly 47414 na scaffold_95_arrow_ctg1 unplaced-scaffold na na VNFC02000125.1 <> na Primary Assembly 46677 na scaffold_96_arrow_ctg1 unplaced-scaffold na na VNFC02000126.1 <> na Primary Assembly 46137 na scaffold_97_arrow_ctg1 unplaced-scaffold na na VNFC02000127.1 <> na Primary Assembly 44424 na scaffold_98_arrow_ctg1 unplaced-scaffold na na VNFC02000128.1 <> na Primary Assembly 43560 na scaffold_99_arrow_ctg1 unplaced-scaffold na na VNFC02000129.1 <> na Primary Assembly 43707 na mBalMus1_MT assembled-molecule MT Mitochondrion CM018075.1 <> na non-nuclear 16403 na