hub GCA_009914755.4 genome assembly shortLabel human T2T-CHM13 v2.0 longLabel human T2T-CHM13 v2.0/Homo sapiens/GCA_009914755.4_T2T-CHM13v2.0 genome assembly email genome-www@soe.ucsc.edu descriptionUrl html/GCA_009914755.4_T2T-CHM13v2.0.description.html useOneFile on genome GCA_009914755.4 taxId 9606 groups groups.txt description T2T-CHM13 v2.0 twoBitPath GCA_009914755.4.2bit twoBitBptUrl GCA_009914755.4.2bit.bpt chromSizes GCA_009914755.4.chrom.sizes.txt chromAliasBb GCA_009914755.4.chromAlias.bb chromAuthority ucsc organism human defaultPos CP068269.2:145458455-145495201 scientificName Homo sapiens htmlPath html/GCA_009914755.4_T2T-CHM13v2.0.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCA/009/914/755/GCA_009914755.4 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCA/009/914/755/GCA_009914755.4 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCA/009/914/755/GCA_009914755.4 liftOver.GCA_021950905.1 liftOver/GCA_009914755.4ToGCA_021950905.1.over.chain.gz liftOver.GCA_021951015.1 liftOver/GCA_009914755.4ToGCA_021951015.1.over.chain.gz liftOver.hg19 liftOver/GCA_009914755.4ToHg19.over.chain.gz liftOver.hg38 liftOver/GCA_009914755.4ToHg38.over.chain.gz track assembly longLabel Assembly from NCBI Genbank Sequences shortLabel Assembly visibility hide colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.assembly.bb type bigBed 6 html html/GCA_009914755.4_T2T-CHM13v2.0.assembly searchIndex name searchTrix ixIxx/GCA_009914755.4_T2T-CHM13v2.0.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database group map track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility hide autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.gc5Base.bw html html/GCA_009914755.4_T2T-CHM13v2.0.gc5Base track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility hide type bigBed 4 + bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.simpleRepeat.bb html html/GCA_009914755.4_T2T-CHM13v2.0.simpleRepeat track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility hide type bigBed 4 + html html/GCA_009914755.4_T2T-CHM13v2.0.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility hide type bigBed 3 bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.windowMasker.bb html html/GCA_009914755.4_T2T-CHM13v2.0.windowMasker track xenoRefGene shortLabel RefSeq mRNAs longLabel RefSeq mRNAs mapped to this assembly group rna visibility hide color 180,0,0 type bigGenePred bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.xenoRefGene.bb labelFields name,geneName,geneName2 searchIndex name searchTrix ixIxx/GCA_009914755.4_T2T-CHM13v2.0.xenoRefGene.ix html html/GCA_009914755.4_T2T-CHM13v2.0.xenoRefGene track GCA_009914755.4_T2T-CHM13v2.0ChainNet compositeTrack on shortLabel Human Chain/Net longLabel Chain and Net alignments to target sequence: GCA_009914755.4_T2T-CHM13v2.0 subGroup1 view Views chain=Chains net=Nets subGroup2 species Species s000=GCA_021950905.1 s001=GCA_021951015.1 s002=hg19 s003=hg38 subGroup3 clade Clade c00=human dragAndDrop subTracks visibility full group compGeno color 0,0,0 altColor 255,255,0 type bed 3 dimensions dimensionX=clade dimensionY=species sortOrder species=+ view=+ clade=+ configurable on html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet track GCA_009914755.4_T2T-CHM13v2.0ChainNetViewchain shortLabel Chains view chain visibility pack subTrack GCA_009914755.4_T2T-CHM13v2.0ChainNet spectrum on track chainGCA_021950905.1 subTrack GCA_009914755.4_T2T-CHM13v2.0ChainNetViewchain off subGroups view=chain species=s000 clade=c00 shortLabel HG002 pat Chain longLabel HG002 pat GCA_021950905.1_HG002.pat.cur.20211005 (2022-02-04) Chained Alignments type bigChain GCA_021950905.1 bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainGCA_021950905.1.bb linkDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainGCA_021950905.1Link.bb otherDb GCA_021950905.1 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 1 track chainSynGCA_021950905.1 subTrack GCA_009914755.4_T2T-CHM13v2.0ChainNetViewchain off subGroups view=chain species=s000 clade=c00 shortLabel HG002 pat synChain longLabel HG002 pat GCA_021950905.1_HG002.pat.cur.20211005 (2022-02-04) Syntenic Chained Alignments type bigChain GCA_021950905.1 bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainSynGCA_021950905.1.bb linkDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainSynGCA_021950905.1Link.bb otherDb GCA_021950905.1 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 2 track chainRBestGCA_021950905.1 subTrack GCA_009914755.4_T2T-CHM13v2.0ChainNetViewchain off subGroups view=chain species=s000 clade=c00 shortLabel HG002 pat rbChain longLabel HG002 pat GCA_021950905.1_HG002.pat.cur.20211005 (2022-02-04) Reciprocal Best Chained Alignments type bigChain GCA_021950905.1 bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainRBestGCA_021950905.1.bb linkDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainRBestGCA_021950905.1Link.bb otherDb GCA_021950905.1 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 3 #track chainLiftOverGCA_021950905.1 #subTrack GCA_009914755.4_T2T-CHM13v2.0ChainNetViewchain off #subGroups view=chain species=s000 clade=c00 #shortLabel HG002 pat loChain #longLabel HG002 pat GCA_021950905.1_HG002.pat.cur.20211005 (2022-02-04) Lift Over Chained Alignments #type bigChain GCA_021950905.1 #bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainLiftOverGCA_021950905.1.bb #linkDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainLiftOverGCA_021950905.1Link.bb #otherDb GCA_021950905.1 #html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet #priority 4 track chainGCA_021951015.1 subTrack GCA_009914755.4_T2T-CHM13v2.0ChainNetViewchain off subGroups view=chain species=s001 clade=c00 shortLabel HG002 mat Chain longLabel HG002 mat GCA_021951015.1_HG002.mat.cur.20211005 (2022-02-04) Chained Alignments type bigChain GCA_021951015.1 bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainGCA_021951015.1.bb linkDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainGCA_021951015.1Link.bb otherDb GCA_021951015.1 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 5 track chainSynGCA_021951015.1 subTrack GCA_009914755.4_T2T-CHM13v2.0ChainNetViewchain off subGroups view=chain species=s001 clade=c00 shortLabel HG002 mat synChain longLabel HG002 mat GCA_021951015.1_HG002.mat.cur.20211005 (2022-02-04) Syntenic Chained Alignments type bigChain GCA_021951015.1 bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainSynGCA_021951015.1.bb linkDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainSynGCA_021951015.1Link.bb otherDb GCA_021951015.1 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 6 track chainRBestGCA_021951015.1 subTrack GCA_009914755.4_T2T-CHM13v2.0ChainNetViewchain off subGroups view=chain species=s001 clade=c00 shortLabel HG002 mat rbChain longLabel HG002 mat GCA_021951015.1_HG002.mat.cur.20211005 (2022-02-04) Reciprocal Best Chained Alignments type bigChain GCA_021951015.1 bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainRBestGCA_021951015.1.bb linkDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainRBestGCA_021951015.1Link.bb otherDb GCA_021951015.1 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 7 #track chainLiftOverGCA_021951015.1 #subTrack GCA_009914755.4_T2T-CHM13v2.0ChainNetViewchain off #subGroups view=chain species=s001 clade=c00 #shortLabel HG002 mat loChain #longLabel HG002 mat GCA_021951015.1_HG002.mat.cur.20211005 (2022-02-04) Lift Over Chained Alignments #type bigChain GCA_021951015.1 #bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainLiftOverGCA_021951015.1.bb #linkDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainLiftOverGCA_021951015.1Link.bb #otherDb GCA_021951015.1 #html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet #priority 8 track chainHg19 subTrack GCA_009914755.4_T2T-CHM13v2.0ChainNetViewchain off subGroups view=chain species=s002 clade=c00 shortLabel hg19 Chain longLabel hg19 (Feb. 2009) Chained Alignments type bigChain hg19 bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainHg19.bb linkDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainHg19Link.bb otherDb hg19 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 9 track chainSynHg19 subTrack GCA_009914755.4_T2T-CHM13v2.0ChainNetViewchain off subGroups view=chain species=s002 clade=c00 shortLabel hg19 synChain longLabel hg19 (Feb. 2009) Syntenic Chained Alignments type bigChain hg19 bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainSynHg19.bb linkDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainSynHg19Link.bb otherDb hg19 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 10 track chainRBestHg19 subTrack GCA_009914755.4_T2T-CHM13v2.0ChainNetViewchain off subGroups view=chain species=s002 clade=c00 shortLabel hg19 rbChain longLabel hg19 (Feb. 2009) Reciprocal Best Chained Alignments type bigChain hg19 bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainRBestHg19.bb linkDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainRBestHg19Link.bb otherDb hg19 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 11 #track chainLiftOverHg19 #subTrack GCA_009914755.4_T2T-CHM13v2.0ChainNetViewchain off #subGroups view=chain species=s002 clade=c00 #shortLabel hg19 loChain #longLabel hg19 (Feb. 2009) Lift Over Chained Alignments #type bigChain hg19 #bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainLiftOverHg19.bb #linkDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainLiftOverHg19Link.bb #otherDb hg19 #html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet #priority 12 track chainHg38 subTrack GCA_009914755.4_T2T-CHM13v2.0ChainNetViewchain off subGroups view=chain species=s003 clade=c00 shortLabel hg38 Chain longLabel hg38 (Dec. 2013) Chained Alignments type bigChain hg38 bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainHg38.bb linkDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainHg38Link.bb otherDb hg38 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 13 track chainSynHg38 subTrack GCA_009914755.4_T2T-CHM13v2.0ChainNetViewchain off subGroups view=chain species=s003 clade=c00 shortLabel hg38 synChain longLabel hg38 (Dec. 2013) Syntenic Chained Alignments type bigChain hg38 bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainSynHg38.bb linkDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainSynHg38Link.bb otherDb hg38 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 14 track chainRBestHg38 subTrack GCA_009914755.4_T2T-CHM13v2.0ChainNetViewchain off subGroups view=chain species=s003 clade=c00 shortLabel hg38 rbChain longLabel hg38 (Dec. 2013) Reciprocal Best Chained Alignments type bigChain hg38 bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainRBestHg38.bb linkDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainRBestHg38Link.bb otherDb hg38 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 15 #track chainLiftOverHg38 #subTrack GCA_009914755.4_T2T-CHM13v2.0ChainNetViewchain on #subGroups view=chain species=s003 clade=c00 #shortLabel hg38 loChain #longLabel hg38 (Dec. 2013) Lift Over Chained Alignments #type bigChain hg38 #bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainLiftOverHg38.bb #linkDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.chainLiftOverHg38Link.bb #otherDb hg38 #html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet #priority 16 track GCA_009914755.4_T2T-CHM13v2.0MafNetViewnet shortLabel Nets view net visibility hide subTrack GCA_009914755.4_T2T-CHM13v2.0ChainNet track netGCA_021950905.1 parent GCA_009914755.4_T2T-CHM13v2.0MafNetViewnet subGroups view=net species=s000 clade=c00 shortLabel HG002 pat Net longLabel HG002 pat GCA_021950905.1_HG002.pat.cur.20211005 (2022-02-04) Net Alignment type bigMaf bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.GCA_021950905.1.net.bb summary bbi/GCA_009914755.4_T2T-CHM13v2.0.GCA_021950905.1.net.summary.bb speciesOrder GCA_021950905.1 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 1 track synNetGCA_021950905.1 parent GCA_009914755.4_T2T-CHM13v2.0MafNetViewnet subGroups view=net species=s000 clade=c00 shortLabel HG002 pat synNet longLabel HG002 pat GCA_021950905.1_HG002.pat.cur.20211005 (2022-02-04) Syntenic Net Alignment type bigMaf bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.GCA_021950905.1.synNet.bb summary bbi/GCA_009914755.4_T2T-CHM13v2.0.GCA_021950905.1.synNet.summary.bb speciesOrder GCA_021950905.1 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 2 track rbestNetGCA_021950905.1 parent GCA_009914755.4_T2T-CHM13v2.0MafNetViewnet subGroups view=net species=s000 clade=c00 shortLabel HG002 pat rbestNet longLabel HG002 pat GCA_021950905.1_HG002.pat.cur.20211005 (2022-02-04) Reciprocal Best Net Alignment type bigMaf bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.GCA_021950905.1.rbestNet.bb summary bbi/GCA_009914755.4_T2T-CHM13v2.0.GCA_021950905.1.rbestNet.summary.bb speciesOrder GCA_021950905.1 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 3 #track liftOverNetGCA_021950905.1 #parent GCA_009914755.4_T2T-CHM13v2.0MafNetViewnet #subGroups view=net species=s000 clade=c00 #shortLabel HG002 pat liftOverNet #longLabel HG002 pat GCA_021950905.1_HG002.pat.cur.20211005 (2022-02-04) Lift Over Net Alignment #type bigMaf #bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.GCA_021950905.1.liftOverNet.bb #summary bbi/GCA_009914755.4_T2T-CHM13v2.0.GCA_021950905.1.liftOverNet.summary.bb #speciesOrder GCA_021950905.1 #html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet #priority 4 track netGCA_021951015.1 parent GCA_009914755.4_T2T-CHM13v2.0MafNetViewnet subGroups view=net species=s001 clade=c00 shortLabel HG002 mat Net longLabel HG002 mat GCA_021951015.1_HG002.mat.cur.20211005 (2022-02-04) Net Alignment type bigMaf bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.GCA_021951015.1.net.bb summary bbi/GCA_009914755.4_T2T-CHM13v2.0.GCA_021951015.1.net.summary.bb speciesOrder GCA_021951015.1 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 5 track synNetGCA_021951015.1 parent GCA_009914755.4_T2T-CHM13v2.0MafNetViewnet subGroups view=net species=s001 clade=c00 shortLabel HG002 mat synNet longLabel HG002 mat GCA_021951015.1_HG002.mat.cur.20211005 (2022-02-04) Syntenic Net Alignment type bigMaf bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.GCA_021951015.1.synNet.bb summary bbi/GCA_009914755.4_T2T-CHM13v2.0.GCA_021951015.1.synNet.summary.bb speciesOrder GCA_021951015.1 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 6 track rbestNetGCA_021951015.1 parent GCA_009914755.4_T2T-CHM13v2.0MafNetViewnet subGroups view=net species=s001 clade=c00 shortLabel HG002 mat rbestNet longLabel HG002 mat GCA_021951015.1_HG002.mat.cur.20211005 (2022-02-04) Reciprocal Best Net Alignment type bigMaf bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.GCA_021951015.1.rbestNet.bb summary bbi/GCA_009914755.4_T2T-CHM13v2.0.GCA_021951015.1.rbestNet.summary.bb speciesOrder GCA_021951015.1 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 7 #track liftOverNetGCA_021951015.1 #parent GCA_009914755.4_T2T-CHM13v2.0MafNetViewnet #subGroups view=net species=s001 clade=c00 #shortLabel HG002 mat liftOverNet #longLabel HG002 mat GCA_021951015.1_HG002.mat.cur.20211005 (2022-02-04) Lift Over Net Alignment #type bigMaf #bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.GCA_021951015.1.liftOverNet.bb #summary bbi/GCA_009914755.4_T2T-CHM13v2.0.GCA_021951015.1.liftOverNet.summary.bb #speciesOrder GCA_021951015.1 #html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet #priority 8 track netHg19 parent GCA_009914755.4_T2T-CHM13v2.0MafNetViewnet subGroups view=net species=s002 clade=c00 shortLabel hg19 Net longLabel hg19 (Feb. 2009) Net Alignment type bigMaf bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.hg19.net.bb summary bbi/GCA_009914755.4_T2T-CHM13v2.0.hg19.net.summary.bb speciesOrder hg19 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 9 track synNetHg19 parent GCA_009914755.4_T2T-CHM13v2.0MafNetViewnet subGroups view=net species=s002 clade=c00 shortLabel hg19 synNet longLabel hg19 (Feb. 2009) Syntenic Net Alignment type bigMaf bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.hg19.synNet.bb summary bbi/GCA_009914755.4_T2T-CHM13v2.0.hg19.synNet.summary.bb speciesOrder hg19 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 10 track rbestNetHg19 parent GCA_009914755.4_T2T-CHM13v2.0MafNetViewnet subGroups view=net species=s002 clade=c00 shortLabel hg19 rbestNet longLabel hg19 (Feb. 2009) Reciprocal Best Net Alignment type bigMaf bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.hg19.rbestNet.bb summary bbi/GCA_009914755.4_T2T-CHM13v2.0.hg19.rbestNet.summary.bb speciesOrder hg19 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 11 #track liftOverNetHg19 #parent GCA_009914755.4_T2T-CHM13v2.0MafNetViewnet #subGroups view=net species=s002 clade=c00 #shortLabel hg19 liftOverNet #longLabel hg19 (Feb. 2009) Lift Over Net Alignment #type bigMaf #bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.hg19.liftOverNet.bb #summary bbi/GCA_009914755.4_T2T-CHM13v2.0.hg19.liftOverNet.summary.bb #speciesOrder hg19 #html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet #priority 12 track netHg38 parent GCA_009914755.4_T2T-CHM13v2.0MafNetViewnet subGroups view=net species=s003 clade=c00 shortLabel hg38 Net longLabel hg38 (Dec. 2013) Net Alignment type bigMaf bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.hg38.net.bb summary bbi/GCA_009914755.4_T2T-CHM13v2.0.hg38.net.summary.bb speciesOrder hg38 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 13 track synNetHg38 parent GCA_009914755.4_T2T-CHM13v2.0MafNetViewnet subGroups view=net species=s003 clade=c00 shortLabel hg38 synNet longLabel hg38 (Dec. 2013) Syntenic Net Alignment type bigMaf bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.hg38.synNet.bb summary bbi/GCA_009914755.4_T2T-CHM13v2.0.hg38.synNet.summary.bb speciesOrder hg38 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 14 track rbestNetHg38 parent GCA_009914755.4_T2T-CHM13v2.0MafNetViewnet subGroups view=net species=s003 clade=c00 shortLabel hg38 rbestNet longLabel hg38 (Dec. 2013) Reciprocal Best Net Alignment type bigMaf bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.hg38.rbestNet.bb summary bbi/GCA_009914755.4_T2T-CHM13v2.0.hg38.rbestNet.summary.bb speciesOrder hg38 html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet priority 15 #track liftOverNetHg38 #parent GCA_009914755.4_T2T-CHM13v2.0MafNetViewnet #subGroups view=net species=s003 clade=c00 #shortLabel hg38 liftOverNet #longLabel hg38 (Dec. 2013) Lift Over Net Alignment #type bigMaf #bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.hg38.liftOverNet.bb #summary bbi/GCA_009914755.4_T2T-CHM13v2.0.hg38.liftOverNet.summary.bb #speciesOrder hg38 #html html/GCA_009914755.4_T2T-CHM13v2.0.chainNet #priority 16 track refSeqComposite compositeTrack on shortLabel NCBI RefSeq longLabel RefSeq gene predictions from NCBI group genes visibility pack type bigBed dragAndDrop subTracks allButtonPair on dataVersion NCBI Homo sapiens Updated Annotation Release 110 (2022-04-12) html html/GCA_009914755.4_T2T-CHM13v2.0.refSeqComposite priority 2 track ncbiRefSeq parent refSeqComposite on color 12,12,120 altColor 120,12,12 shortLabel RefSeq All type bigGenePred labelFields name,geneName,geneName2 searchIndex name searchTrix ixIxx/GCA_009914755.4_T2T-CHM13v2.0.ncbiRefSeq.ix bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.ncbiRefSeq.bb longLabel NCBI RefSeq genes, curated and predicted sets (NM_*, XM_*, NR_*, XR_*, NP_* or YP_*) idXref ncbiRefSeqLink mrnaAcc name baseColorUseCds given baseColorDefault genomicCodons priority 1 track ncbiRefSeqCurated color 12,12,120 parent refSeqComposite on shortLabel RefSeq Curated longLabel NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*) type bigGenePred labelFields name,geneName,geneName2 searchIndex name searchTrix ixIxx/GCA_009914755.4_T2T-CHM13v2.0.ncbiRefSeqCurated.ix idXref ncbiRefSeqLink mrnaAcc name bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.ncbiRefSeqCurated.bb baseColorUseCds given baseColorDefault genomicCodons priority 2 track ncbiRefSeqPredicted color 12,12,120 parent refSeqComposite on shortLabel RefSeq Predicted longLabel NCBI RefSeq genes, predicted subset (XM_* or XR_*) type bigGenePred labelFields name,geneName,geneName2 searchIndex name searchTrix ixIxx/GCA_009914755.4_T2T-CHM13v2.0.ncbiRefSeqPredicted.ix idXref ncbiRefSeqLink mrnaAcc name bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.ncbiRefSeqPredicted.bb baseColorUseCds given baseColorDefault genomicCodons priority 3 track ncbiRefSeqOther color 32,32,32 parent refSeqComposite on shortLabel RefSeq Other longLabel NCBI RefSeq other annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*) priority 4 searchIndex name searchTrix ixIxx/GCA_009914755.4_T2T-CHM13v2.0.ncbiRefSeqOther.ix bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.ncbiRefSeqOther.bb type bigBed 12 + labelFields gene skipEmptyFields on urls GeneID="https://www.ncbi.nlm.nih.gov/gene/$$" MIM="https://www.ncbi.nlm.nih.gov/omim/$$" HGNC="http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" FlyBase="http://flybase.org/reports/$$" WormBase="http://www.wormbase.org/db/gene/gene?name=$$" RGD="https://rgd.mcw.edu/rgdweb/search/search.html?term=$$" SGD="https://www.yeastgenome.org/locus/$$" miRBase="http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$$" ZFIN="https://zfin.org/$$" MGI="http://www.informatics.jax.org/marker/$$" track ncbiRefSeqPsl priority 5 parent refSeqComposite off shortLabel RefSeq Alignments longLabel RefSeq Alignments of RNAs type bigPsl searchIndex name bigDataUrl bbi/GCA_009914755.4_T2T-CHM13v2.0.bigPsl.bb indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsMaxZoom 10000.0 showCdsAllScales . baseColorDefault diffCodons pslSequence no baseColorUseSequence lfExtra baseColorUseCds table given color 0,0,0 include GCA_009914755.4.userTrackDb.txt