# Assembly name: tgrh88 # Organism name: Toxoplasma gondii (apicomplexans) # Infraspecific name: strain=RH-88 # Taxid: 5811 # BioSample: SAMN12710240 # BioProject: PRJNA279557 # Submitter: The J. Craig Venter Institute # Date: 2020-05-15 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAAUHK01 # Assembly method: HGAP v. 3 # Expected final version: no # Genome coverage: 122.0x # Sequencing technology: PacBio # GenBank assembly accession: GCA_013099955.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_013099965.1 Primary Assembly ## GCA_013099975.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name TGRH_chrIa assembled-molecule Ia Chromosome CM023081.1 <> na Primary Assembly 1869585 na TGRH_chrIb assembled-molecule Ib Chromosome CM023082.1 <> na Primary Assembly 2065829 na TGRH_chrII assembled-molecule II Chromosome CM023083.1 <> na Primary Assembly 2534231 na TGRH_chrIII assembled-molecule III Chromosome CM023084.1 <> na Primary Assembly 2618524 na TGRH_chrIV assembled-molecule IV Chromosome CM023085.1 <> na Primary Assembly 2746832 na TGRH_chrV assembled-molecule V Chromosome CM023086.1 <> na Primary Assembly 3468907 na TGRH_chrVI assembled-molecule VI Chromosome CM023087.1 <> na Primary Assembly 3728165 na TGRH_chrVIIa assembled-molecule VIIa Chromosome CM023088.1 <> na Primary Assembly 4665349 na TGRH_chrVIIb_chrVIII assembled-molecule VIII Chromosome CM023089.1 <> na Primary Assembly 12105344 na TGRH_chrIX assembled-molecule IX Chromosome CM023090.1 <> na Primary Assembly 6531380 na TGRH_chrX assembled-molecule X Chromosome CM023091.1 <> na Primary Assembly 7728230 na TGRH_chrXI assembled-molecule XI Chromosome CM023092.1 <> na Primary Assembly 6690982 na TGRH_chrXII assembled-molecule XII Chromosome CM023093.1 <> na Primary Assembly 7221097 na asmbl.386 unplaced-scaffold na na JAAUHK010000002.1 <> na Primary Assembly 97714 na asmbl.387 unplaced-scaffold na na JAAUHK010000003.1 <> na Primary Assembly 116436 na asmbl.388 unplaced-scaffold na na JAAUHK010000004.1 <> na Primary Assembly 79187 na asmbl.389 unplaced-scaffold na na JAAUHK010000005.1 <> na Primary Assembly 28644 na asmbl.390 unplaced-scaffold na na JAAUHK010000006.1 <> na Primary Assembly 28514 na asmbl.391 unplaced-scaffold na na JAAUHK010000007.1 <> na Primary Assembly 39225 na asmbl.392 unplaced-scaffold na na JAAUHK010000008.1 <> na Primary Assembly 60946 na asmbl.393 unplaced-scaffold na na JAAUHK010000009.1 <> na Primary Assembly 26667 na asmbl.394 unplaced-scaffold na na JAAUHK010000010.1 <> na Primary Assembly 26922 na asmbl.395 unplaced-scaffold na na JAAUHK010000011.1 <> na Primary Assembly 39556 na asmbl.396 unplaced-scaffold na na JAAUHK010000012.1 <> na Primary Assembly 28810 na asmbl.397 unplaced-scaffold na na JAAUHK010000013.1 <> na Primary Assembly 16299 na asmbl.398 unplaced-scaffold na na JAAUHK010000014.1 <> na Primary Assembly 33523 na asmbl.400 unplaced-scaffold na na JAAUHK010000015.1 <> na Primary Assembly 42350 na asmbl.401 unplaced-scaffold na na JAAUHK010000016.1 <> na Primary Assembly 43284 na asmbl.402 unplaced-scaffold na na JAAUHK010000017.1 <> na Primary Assembly 47576 na asmbl.404 unplaced-scaffold na na JAAUHK010000018.1 <> na Primary Assembly 22487 na asmbl.405 unplaced-scaffold na na JAAUHK010000019.1 <> na Primary Assembly 23363 na asmbl.406 unplaced-scaffold na na JAAUHK010000020.1 <> na Primary Assembly 22198 na asmbl.408 unplaced-scaffold na na JAAUHK010000021.1 <> na Primary Assembly 22331 na asmbl.409 unplaced-scaffold na na JAAUHK010000022.1 <> na Primary Assembly 27554 na asmbl.410 unplaced-scaffold na na JAAUHK010000023.1 <> na Primary Assembly 31785 na asmbl.411 unplaced-scaffold na na JAAUHK010000024.1 <> na Primary Assembly 10279 na asmbl.412 unplaced-scaffold na na JAAUHK010000025.1 <> na Primary Assembly 30311 na asmbl.413 unplaced-scaffold na na JAAUHK010000026.1 <> na Primary Assembly 27933 na asmbl.414 unplaced-scaffold na na JAAUHK010000027.1 <> na Primary Assembly 23444 na asmbl.415 unplaced-scaffold na na JAAUHK010000028.1 <> na Primary Assembly 19262 na asmbl.416 unplaced-scaffold na na JAAUHK010000029.1 <> na Primary Assembly 15111 na asmbl.417 unplaced-scaffold na na JAAUHK010000030.1 <> na Primary Assembly 13384 na asmbl.418 unplaced-scaffold na na JAAUHK010000031.1 <> na Primary Assembly 19995 na asmbl.419 unplaced-scaffold na na JAAUHK010000032.1 <> na Primary Assembly 21215 na asmbl.420 unplaced-scaffold na na JAAUHK010000033.1 <> na Primary Assembly 30959 na asmbl.421 unplaced-scaffold na na JAAUHK010000034.1 <> na Primary Assembly 33024 na asmbl.422 unplaced-scaffold na na JAAUHK010000035.1 <> na Primary Assembly 6790 na asmbl.423 unplaced-scaffold na na JAAUHK010000036.1 <> na Primary Assembly 6348 na asmbl.424 unplaced-scaffold na na JAAUHK010000037.1 <> na Primary Assembly 12942 na asmbl.425 unplaced-scaffold na na JAAUHK010000038.1 <> na Primary Assembly 60965 na asmbl.426 unplaced-scaffold na na JAAUHK010000039.1 <> na Primary Assembly 16651 na asmbl.427 unplaced-scaffold na na JAAUHK010000040.1 <> na Primary Assembly 20837 na asmbl.428 unplaced-scaffold na na JAAUHK010000041.1 <> na Primary Assembly 47758 na asmbl.429 unplaced-scaffold na na JAAUHK010000042.1 <> na Primary Assembly 18719 na asmbl.430 unplaced-scaffold na na JAAUHK010000043.1 <> na Primary Assembly 9564 na asmbl.431 unplaced-scaffold na na JAAUHK010000044.1 <> na Primary Assembly 7860 na asmbl.432 unplaced-scaffold na na JAAUHK010000045.1 <> na Primary Assembly 16587 na asmbl.433 unplaced-scaffold na na JAAUHK010000046.1 <> na Primary Assembly 12539 na asmbl.434 unplaced-scaffold na na JAAUHK010000047.1 <> na Primary Assembly 28476 na asmbl.435 unplaced-scaffold na na JAAUHK010000048.1 <> na Primary Assembly 22591 na asmbl.436 unplaced-scaffold na na JAAUHK010000049.1 <> na Primary Assembly 9846 na asmbl.437 unplaced-scaffold na na JAAUHK010000050.1 <> na Primary Assembly 18556 na asmbl.438 unplaced-scaffold na na JAAUHK010000051.1 <> na Primary Assembly 26503 na asmbl.439 unplaced-scaffold na na JAAUHK010000052.1 <> na Primary Assembly 17948 na asmbl.440 unplaced-scaffold na na JAAUHK010000053.1 <> na Primary Assembly 13542 na asmbl.441 unplaced-scaffold na na JAAUHK010000054.1 <> na Primary Assembly 18389 na asmbl.442 unplaced-scaffold na na JAAUHK010000055.1 <> na Primary Assembly 29811 na asmbl.443 unplaced-scaffold na na JAAUHK010000056.1 <> na Primary Assembly 15409 na asmbl.444 unplaced-scaffold na na JAAUHK010000057.1 <> na Primary Assembly 15666 na asmbl.445 unplaced-scaffold na na JAAUHK010000058.1 <> na Primary Assembly 15460 na asmbl.446 unplaced-scaffold na na JAAUHK010000059.1 <> na Primary Assembly 2872 na asmbl.447 unplaced-scaffold na na JAAUHK010000060.1 <> na Primary Assembly 7367 na asmbl.448 unplaced-scaffold na na JAAUHK010000061.1 <> na Primary Assembly 15121 na asmbl.449 unplaced-scaffold na na JAAUHK010000062.1 <> na Primary Assembly 9189 na asmbl.450 unplaced-scaffold na na JAAUHK010000063.1 <> na Primary Assembly 15308 na asmbl.451 unplaced-scaffold na na JAAUHK010000064.1 <> na Primary Assembly 6751 na asmbl.452 unplaced-scaffold na na JAAUHK010000065.1 <> na Primary Assembly 13792 na asmbl.453 unplaced-scaffold na na JAAUHK010000066.1 <> na Primary Assembly 7497 na asmbl.454 unplaced-scaffold na na JAAUHK010000067.1 <> na Primary Assembly 4481 na asmbl.455 unplaced-scaffold na na JAAUHK010000068.1 <> na Primary Assembly 20939 na asmbl.456 unplaced-scaffold na na JAAUHK010000069.1 <> na Primary Assembly 18672 na asmbl.457 unplaced-scaffold na na JAAUHK010000070.1 <> na Primary Assembly 18629 na asmbl.458 unplaced-scaffold na na JAAUHK010000071.1 <> na Primary Assembly 17563 na asmbl.459 unplaced-scaffold na na JAAUHK010000072.1 <> na Primary Assembly 16787 na asmbl.460 unplaced-scaffold na na JAAUHK010000073.1 <> na Primary Assembly 20079 na asmbl.461 unplaced-scaffold na na JAAUHK010000074.1 <> na Primary Assembly 16612 na asmbl.462 unplaced-scaffold na na JAAUHK010000075.1 <> na Primary Assembly 18954 na asmbl.463 unplaced-scaffold na na JAAUHK010000076.1 <> na Primary Assembly 14226 na asmbl.464 unplaced-scaffold na na JAAUHK010000077.1 <> na Primary Assembly 11057 na asmbl.465 unplaced-scaffold na na JAAUHK010000078.1 <> na Primary Assembly 10144 na asmbl.466 unplaced-scaffold na na JAAUHK010000079.1 <> na Primary Assembly 7747 na asmbl.467 unplaced-scaffold na na JAAUHK010000080.1 <> na Primary Assembly 24267 na asmbl.468 unplaced-scaffold na na JAAUHK010000081.1 <> na Primary Assembly 14965 na asmbl.469 unplaced-scaffold na na JAAUHK010000082.1 <> na Primary Assembly 14548 na asmbl.470 unplaced-scaffold na na JAAUHK010000083.1 <> na Primary Assembly 17918 na asmbl.471 unplaced-scaffold na na JAAUHK010000084.1 <> na Primary Assembly 9456 na asmbl.472 unplaced-scaffold na na JAAUHK010000085.1 <> na Primary Assembly 8929 na asmbl.473 unplaced-scaffold na na JAAUHK010000086.1 <> na Primary Assembly 12278 na asmbl.474 unplaced-scaffold na na JAAUHK010000087.1 <> na Primary Assembly 8635 na asmbl.475 unplaced-scaffold na na JAAUHK010000088.1 <> na Primary Assembly 13356 na asmbl.476 unplaced-scaffold na na JAAUHK010000089.1 <> na Primary Assembly 3803 na asmbl.477 unplaced-scaffold na na JAAUHK010000090.1 <> na Primary Assembly 9456 na asmbl.478 unplaced-scaffold na na JAAUHK010000091.1 <> na Primary Assembly 15978 na asmbl.479 unplaced-scaffold na na JAAUHK010000092.1 <> na Primary Assembly 4066 na asmbl.480 unplaced-scaffold na na JAAUHK010000093.1 <> na Primary Assembly 6562 na asmbl.481 unplaced-scaffold na na JAAUHK010000094.1 <> na Primary Assembly 13375 na asmbl.482 unplaced-scaffold na na JAAUHK010000095.1 <> na Primary Assembly 23051 na asmbl.483 unplaced-scaffold na na JAAUHK010000096.1 <> na Primary Assembly 16772 na asmbl.484 unplaced-scaffold na na JAAUHK010000097.1 <> na Primary Assembly 19546 na asmbl.485 unplaced-scaffold na na JAAUHK010000098.1 <> na Primary Assembly 10302 na asmbl.486 unplaced-scaffold na na JAAUHK010000099.1 <> na Primary Assembly 14209 na asmbl.487 unplaced-scaffold na na JAAUHK010000100.1 <> na Primary Assembly 4530 na asmbl.488 unplaced-scaffold na na JAAUHK010000101.1 <> na Primary Assembly 15527 na asmbl.489 unplaced-scaffold na na JAAUHK010000102.1 <> na Primary Assembly 5830 na asmbl.490 unplaced-scaffold na na JAAUHK010000103.1 <> na Primary Assembly 15366 na asmbl.491 unplaced-scaffold na na JAAUHK010000104.1 <> na Primary Assembly 2598 na asmbl.492 unplaced-scaffold na na JAAUHK010000105.1 <> na Primary Assembly 15457 na asmbl.493 unplaced-scaffold na na JAAUHK010000106.1 <> na Primary Assembly 14710 na asmbl.494 unplaced-scaffold na na JAAUHK010000107.1 <> na Primary Assembly 10337 na asmbl.495 unplaced-scaffold na na JAAUHK010000108.1 <> na Primary Assembly 27454 na asmbl.496 unplaced-scaffold na na JAAUHK010000109.1 <> na Primary Assembly 13468 na asmbl.497 unplaced-scaffold na na JAAUHK010000110.1 <> na Primary Assembly 9787 na asmbl.498 unplaced-scaffold na na JAAUHK010000111.1 <> na Primary Assembly 7569 na asmbl.499 unplaced-scaffold na na JAAUHK010000112.1 <> na Primary Assembly 8028 na asmbl.500 unplaced-scaffold na na JAAUHK010000113.1 <> na Primary Assembly 6694 na asmbl.501 unplaced-scaffold na na JAAUHK010000114.1 <> na Primary Assembly 13239 na asmbl.502 unplaced-scaffold na na JAAUHK010000115.1 <> na Primary Assembly 33730 na asmbl.503 unplaced-scaffold na na JAAUHK010000116.1 <> na Primary Assembly 11046 na asmbl.504 unplaced-scaffold na na JAAUHK010000117.1 <> na Primary Assembly 6074 na asmbl.505 unplaced-scaffold na na JAAUHK010000118.1 <> na Primary Assembly 6140 na asmbl.506 unplaced-scaffold na na JAAUHK010000119.1 <> na Primary Assembly 13448 na asmbl.507 unplaced-scaffold na na JAAUHK010000120.1 <> na Primary Assembly 14065 na asmbl.508 unplaced-scaffold na na JAAUHK010000121.1 <> na Primary Assembly 15470 na asmbl.509 unplaced-scaffold na na JAAUHK010000122.1 <> na Primary Assembly 8637 na asmbl.510 unplaced-scaffold na na JAAUHK010000123.1 <> na Primary Assembly 10296 na asmbl.511 unplaced-scaffold na na JAAUHK010000124.1 <> na Primary Assembly 15286 na asmbl.512 unplaced-scaffold na na JAAUHK010000125.1 <> na Primary Assembly 15046 na asmbl.513 unplaced-scaffold na na JAAUHK010000126.1 <> na Primary Assembly 17891 na asmbl.514 unplaced-scaffold na na JAAUHK010000127.1 <> na Primary Assembly 5072 na asmbl.515 unplaced-scaffold na na JAAUHK010000128.1 <> na Primary Assembly 12344 na asmbl.516 unplaced-scaffold na na JAAUHK010000129.1 <> na Primary Assembly 10253 na asmbl.517 unplaced-scaffold na na JAAUHK010000130.1 <> na Primary Assembly 8847 na asmbl.518 unplaced-scaffold na na JAAUHK010000131.1 <> na Primary Assembly 13614 na asmbl.519 unplaced-scaffold na na JAAUHK010000132.1 <> na Primary Assembly 7496 na asmbl.520 unplaced-scaffold na na JAAUHK010000133.1 <> na Primary Assembly 7565 na asmbl.521 unplaced-scaffold na na JAAUHK010000134.1 <> na Primary Assembly 2606 na asmbl.522 unplaced-scaffold na na JAAUHK010000135.1 <> na Primary Assembly 6936 na asmbl.523 unplaced-scaffold na na JAAUHK010000136.1 <> na Primary Assembly 3275 na asmbl.524 unplaced-scaffold na na JAAUHK010000137.1 <> na Primary Assembly 12494 na asmbl.525 unplaced-scaffold na na JAAUHK010000138.1 <> na Primary Assembly 3731 na asmbl.526 unplaced-scaffold na na JAAUHK010000139.1 <> na Primary Assembly 14119 na asmbl.527 unplaced-scaffold na na JAAUHK010000140.1 <> na Primary Assembly 8274 na asmbl.528 unplaced-scaffold na na JAAUHK010000141.1 <> na Primary Assembly 8993 na asmbl.529 unplaced-scaffold na na JAAUHK010000142.1 <> na Primary Assembly 3954 na asmbl.530 unplaced-scaffold na na JAAUHK010000143.1 <> na Primary Assembly 3409 na asmbl.531 unplaced-scaffold na na JAAUHK010000144.1 <> na Primary Assembly 17426 na asmbl.532 unplaced-scaffold na na JAAUHK010000145.1 <> na Primary Assembly 10180 na asmbl.533 unplaced-scaffold na na JAAUHK010000146.1 <> na Primary Assembly 19704 na asmbl.534 unplaced-scaffold na na JAAUHK010000147.1 <> na Primary Assembly 14188 na asmbl.535 unplaced-scaffold na na JAAUHK010000148.1 <> na Primary Assembly 15928 na asmbl.536 unplaced-scaffold na na JAAUHK010000149.1 <> na Primary Assembly 15293 na asmbl.537 unplaced-scaffold na na JAAUHK010000150.1 <> na Primary Assembly 2434 na asmbl.538 unplaced-scaffold na na JAAUHK010000151.1 <> na Primary Assembly 6485 na asmbl.539 unplaced-scaffold na na JAAUHK010000152.1 <> na Primary Assembly 8512 na asmbl.540 unplaced-scaffold na na JAAUHK010000153.1 <> na Primary Assembly 4200 na asmbl.541 unplaced-scaffold na na JAAUHK010000154.1 <> na Primary Assembly 8957 na asmbl.542 unplaced-scaffold na na JAAUHK010000155.1 <> na Primary Assembly 4145 na asmbl.543 unplaced-scaffold na na JAAUHK010000156.1 <> na Primary Assembly 7323 na asmbl.544 unplaced-scaffold na na JAAUHK010000157.1 <> na Primary Assembly 4129 na asmbl.546 unplaced-scaffold na na JAAUHK010000158.1 <> na Primary Assembly 7463 na asmbl.547 unplaced-scaffold na na JAAUHK010000159.1 <> na Primary Assembly 4089 na asmbl.548 unplaced-scaffold na na JAAUHK010000160.1 <> na Primary Assembly 3494 na asmbl.549 unplaced-scaffold na na JAAUHK010000161.1 <> na Primary Assembly 6073 na asmbl.550 unplaced-scaffold na na JAAUHK010000162.1 <> na Primary Assembly 7008 na asmbl.551 unplaced-scaffold na na JAAUHK010000163.1 <> na Primary Assembly 15945 na asmbl.552 unplaced-scaffold na na JAAUHK010000164.1 <> na Primary Assembly 12804 na asmbl.553 unplaced-scaffold na na JAAUHK010000165.1 <> na Primary Assembly 13726 na asmbl.554 unplaced-scaffold na na JAAUHK010000166.1 <> na Primary Assembly 10824 na asmbl.555 unplaced-scaffold na na JAAUHK010000167.1 <> na Primary Assembly 7987 na asmbl.556 unplaced-scaffold na na JAAUHK010000168.1 <> na Primary Assembly 15176 na asmbl.557 unplaced-scaffold na na JAAUHK010000169.1 <> na Primary Assembly 9207 na asmbl.558 unplaced-scaffold na na JAAUHK010000170.1 <> na Primary Assembly 12762 na asmbl.559 unplaced-scaffold na na JAAUHK010000171.1 <> na Primary Assembly 14651 na asmbl.560 unplaced-scaffold na na JAAUHK010000172.1 <> na Primary Assembly 14109 na asmbl.561 unplaced-scaffold na na JAAUHK010000173.1 <> na Primary Assembly 15174 na asmbl.562 unplaced-scaffold na na JAAUHK010000174.1 <> na Primary Assembly 14261 na asmbl.563 unplaced-scaffold na na JAAUHK010000175.1 <> na Primary Assembly 6927 na asmbl.564 unplaced-scaffold na na JAAUHK010000176.1 <> na Primary Assembly 10206 na asmbl.565 unplaced-scaffold na na JAAUHK010000177.1 <> na Primary Assembly 8459 na asmbl.566 unplaced-scaffold na na JAAUHK010000178.1 <> na Primary Assembly 15229 na asmbl.567 unplaced-scaffold na na JAAUHK010000179.1 <> na Primary Assembly 8018 na asmbl.568 unplaced-scaffold na na JAAUHK010000180.1 <> na Primary Assembly 14132 na asmbl.569 unplaced-scaffold na na JAAUHK010000181.1 <> na Primary Assembly 5179 na asmbl.570 unplaced-scaffold na na JAAUHK010000182.1 <> na Primary Assembly 7680 na asmbl.571 unplaced-scaffold na na JAAUHK010000183.1 <> na Primary Assembly 11228 na asmbl.572 unplaced-scaffold na na JAAUHK010000184.1 <> na Primary Assembly 9466 na apicoplast assembled-molecule Api Apicoplast CM023094.1 <> na non-nuclear 35031 na