# Assembly name: mPipKuh1.pri # Organism name: Pipistrellus kuhlii (Kuhl's pipistrelle) # Isolate: mPipKuh1 # Sex: male # Taxid: 59472 # BioSample: SAMN14734388 # BioProject: PRJNA628567 # Submitter: Bat1K # Date: 2025-12-17 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JACAGB02 # Assembly method: DAmar v. Apr 19; Bionano Solve DLS v. 3.3; Salsa2 HiC v. git commit: e3ae7d8; GenomicConsensus v. git commit: 038de5c; longranger align v. 2.2.0; Freebayes v. 1.2.0; HiGlass manual curation v. 1.5 # Expected final version: No # Genome coverage: 80.8x # Sequencing technology: PacBio Sequel CLR; 10X Genomics Chromium linked reads; Bionano Genomics; Phase Genomics HiC; PacBio Sequel IsoSeq # RefSeq category: Reference Genome # GenBank assembly accession: GCA_014108245.2 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_014108315.2 Primary Assembly ## GCA_014108325.2 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM133199.1 <> na Primary Assembly 205267663 na SUPER_2 assembled-molecule 2 Chromosome CM133200.1 <> na Primary Assembly 197818909 na SUPER_3 assembled-molecule 3 Chromosome CM133201.1 <> na Primary Assembly 191904902 na SUPER_4 assembled-molecule 4 Chromosome CM133202.1 <> na Primary Assembly 101617198 na SUPER_5 assembled-molecule 5 Chromosome CM133203.1 <> na Primary Assembly 97264675 na SUPER_6 assembled-molecule 6 Chromosome CM133204.1 <> na Primary Assembly 87241658 na SUPER_7 assembled-molecule 7 Chromosome CM133205.1 <> na Primary Assembly 85223536 na SUPER_8 assembled-molecule 8 Chromosome CM133206.1 <> na Primary Assembly 83995802 na SUPER_9 assembled-molecule 9 Chromosome CM133207.1 <> na Primary Assembly 74812939 na SUPER_10 assembled-molecule 10 Chromosome CM133208.1 <> na Primary Assembly 72043675 na SUPER_11 assembled-molecule 11 Chromosome CM133209.1 <> na Primary Assembly 71845703 na SUPER_12 assembled-molecule 12 Chromosome CM133210.1 <> na Primary Assembly 59947704 na SUPER_13 assembled-molecule 13 Chromosome CM133211.1 <> na Primary Assembly 54044027 na SUPER_14 assembled-molecule 14 Chromosome CM133212.1 <> na Primary Assembly 54024802 na SUPER_15 assembled-molecule 15 Chromosome CM133213.1 <> na Primary Assembly 48531804 na SUPER_16 assembled-molecule 16 Chromosome CM133214.1 <> na Primary Assembly 47403736 na SUPER_17 assembled-molecule 17 Chromosome CM133215.1 <> na Primary Assembly 44072597 na SUPER_18 assembled-molecule 18 Chromosome CM133216.1 <> na Primary Assembly 40131819 na SUPER_19 assembled-molecule 19 Chromosome CM133217.1 <> na Primary Assembly 24750278 na SUPER_20 assembled-molecule 20 Chromosome CM133218.1 <> na Primary Assembly 13301696 na SUPER_21 assembled-molecule 21 Chromosome CM133219.1 <> na Primary Assembly 7111884 na SUPER_X assembled-molecule X Chromosome CM133220.1 <> na Primary Assembly 102105172 na SUPER_Y assembled-molecule Y Chromosome CM133221.1 <> na Primary Assembly 1618322 na SUPER_8_unloc_1 unlocalized-scaffold 8 Chromosome JACAGB020000028.1 <> na Primary Assembly 364925 na SUPER_17_unloc_3 unlocalized-scaffold 17 Chromosome JACAGB020000030.1 <> na Primary Assembly 296858 na SUPER_17_unloc_2 unlocalized-scaffold 17 Chromosome JACAGB020000040.1 <> na Primary Assembly 170204 na SUPER_17_unloc_1 unlocalized-scaffold 17 Chromosome JACAGB020000057.1 <> na Primary Assembly 85275 na SUPER_21_unloc_1 unlocalized-scaffold 21 Chromosome JACAGB020000029.1 <> na Primary Assembly 360829 na SUPER_21_unloc_5 unlocalized-scaffold 21 Chromosome JACAGB020000031.1 <> na Primary Assembly 269317 na SUPER_21_unloc_4 unlocalized-scaffold 21 Chromosome JACAGB020000033.1 <> na Primary Assembly 214174 na SUPER_21_unloc_2 unlocalized-scaffold 21 Chromosome JACAGB020000035.1 <> na Primary Assembly 194479 na SUPER_21_unloc_6 unlocalized-scaffold 21 Chromosome JACAGB020000044.1 <> na Primary Assembly 141724 na SUPER_21_unloc_3 unlocalized-scaffold 21 Chromosome JACAGB020000046.1 <> na Primary Assembly 118922 na Scaffold_24 unplaced-scaffold na na JACAGB020000024.1 <> na Primary Assembly 1923245 na Scaffold_42 unplaced-scaffold na na JACAGB020000026.1 <> na Primary Assembly 704466 na Scaffold_43 unplaced-scaffold na na JACAGB020000027.1 <> na Primary Assembly 601155 na Scaffold_47 unplaced-scaffold na na JACAGB020000032.1 <> na Primary Assembly 215410 na Scaffold_46 unplaced-scaffold na na JACAGB020000034.1 <> na Primary Assembly 199586 na Scaffold_45 unplaced-scaffold na na JACAGB020000036.1 <> na Primary Assembly 188696 na Scaffold_44 unplaced-scaffold na na JACAGB020000037.1 <> na Primary Assembly 182308 na Scaffold_25 unplaced-scaffold na na JACAGB020000038.1 <> na Primary Assembly 178766 na Scaffold_26 unplaced-scaffold na na JACAGB020000039.1 <> na Primary Assembly 170761 na Scaffold_31 unplaced-scaffold na na JACAGB020000041.1 <> na Primary Assembly 160390 na Scaffold_32 unplaced-scaffold na na JACAGB020000042.1 <> na Primary Assembly 151810 na Scaffold_33 unplaced-scaffold na na JACAGB020000043.1 <> na Primary Assembly 148389 na Scaffold_48 unplaced-scaffold na na JACAGB020000045.1 <> na Primary Assembly 141529 na Scaffold_34 unplaced-scaffold na na JACAGB020000047.1 <> na Primary Assembly 111135 na Scaffold_35 unplaced-scaffold na na JACAGB020000048.1 <> na Primary Assembly 110846 na Scaffold_36 unplaced-scaffold na na JACAGB020000049.1 <> na Primary Assembly 108560 na Scaffold_37 unplaced-scaffold na na JACAGB020000050.1 <> na Primary Assembly 104765 na Scaffold_38 unplaced-scaffold na na JACAGB020000051.1 <> na Primary Assembly 101923 na Scaffold_39 unplaced-scaffold na na JACAGB020000052.1 <> na Primary Assembly 101097 na Scaffold_49 unplaced-scaffold na na JACAGB020000053.1 <> na Primary Assembly 95955 na Scaffold_40 unplaced-scaffold na na JACAGB020000054.1 <> na Primary Assembly 92969 na Scaffold_41 unplaced-scaffold na na JACAGB020000055.1 <> na Primary Assembly 89578 na Scaffold_50 unplaced-scaffold na na JACAGB020000056.1 <> na Primary Assembly 86404 na Scaffold_30 unplaced-scaffold na na JACAGB020000058.1 <> na Primary Assembly 84243 na Scaffold_51 unplaced-scaffold na na JACAGB020000059.1 <> na Primary Assembly 83981 na Scaffold_27 unplaced-scaffold na na JACAGB020000060.1 <> na Primary Assembly 81351 na Scaffold_52 unplaced-scaffold na na JACAGB020000061.1 <> na Primary Assembly 80644 na Scaffold_53 unplaced-scaffold na na JACAGB020000062.1 <> na Primary Assembly 72481 na Scaffold_28 unplaced-scaffold na na JACAGB020000063.1 <> na Primary Assembly 72101 na Scaffold_54 unplaced-scaffold na na JACAGB020000064.1 <> na Primary Assembly 71636 na Scaffold_55 unplaced-scaffold na na JACAGB020000065.1 <> na Primary Assembly 67228 na Scaffold_29 unplaced-scaffold na na JACAGB020000066.1 <> na Primary Assembly 64172 na Scaffold_56 unplaced-scaffold na na JACAGB020000067.1 <> na Primary Assembly 62858 na Scaffold_57 unplaced-scaffold na na JACAGB020000068.1 <> na Primary Assembly 62149 na Scaffold_58 unplaced-scaffold na na JACAGB020000069.1 <> na Primary Assembly 60239 na Scaffold_59 unplaced-scaffold na na JACAGB020000070.1 <> na Primary Assembly 60081 na Scaffold_60 unplaced-scaffold na na JACAGB020000071.1 <> na Primary Assembly 58096 na Scaffold_61 unplaced-scaffold na na JACAGB020000072.1 <> na Primary Assembly 54271 na Scaffold_62 unplaced-scaffold na na JACAGB020000073.1 <> na Primary Assembly 53600 na Scaffold_63 unplaced-scaffold na na JACAGB020000074.1 <> na Primary Assembly 53585 na Scaffold_64 unplaced-scaffold na na JACAGB020000075.1 <> na Primary Assembly 48430 na Scaffold_65 unplaced-scaffold na na JACAGB020000076.1 <> na Primary Assembly 41574 na Scaffold_66 unplaced-scaffold na na JACAGB020000077.1 <> na Primary Assembly 40115 na Scaffold_179 unplaced-scaffold na na JACAGB020000078.1 <> na Primary Assembly 39297 na Scaffold_67 unplaced-scaffold na na JACAGB020000079.1 <> na Primary Assembly 35013 na Scaffold_68 unplaced-scaffold na na JACAGB020000080.1 <> na Primary Assembly 34306 na Scaffold_184 unplaced-scaffold na na JACAGB020000081.1 <> na Primary Assembly 33796 na Scaffold_69 unplaced-scaffold na na JACAGB020000082.1 <> na Primary Assembly 19243 na mPipKuh1 assembled-molecule MT Mitochondrion CM024384.2 <> na non-nuclear 17207 na