# Assembly name: mRhiFer1.p # Organism name: Rhinolophus ferrumequinum (greater horseshoe bat) # Isolate: mRhiFer1 # Sex: female # Taxid: 59479 # BioSample: SAMN14734547 # BioProject: PRJNA628581 # Submitter: Bat1K # Date: 2020-08-13 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JACAGC01 # Assembly method: DAmar v. APRIL-2019; Bionano Solve BSPQI + BSSSI v. 3.3; Salsa2 HiC v. git commit: e3ae7d8; GenomicConsensus v. git commit: 038de5c; longranger align v. 2.2.0; Freebayes v. 1.2.0; HiGlass manual curation v. 1.5 # Expected final version: no # Genome coverage: 73.3x # Sequencing technology: PacBio Sequel CLR; 10X Genomics chromium linked reads; Bionano Genomics; Phase Genomics HiC; PacBio Sequel IsoSeq # GenBank assembly accession: GCA_014108255.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_014108295.1 Primary Assembly ## GCA_014108305.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold_m29_p_1 unplaced-scaffold na na JACAGC010000001.1 <> na Primary Assembly 125954868 na scaffold_m29_p_2 unplaced-scaffold na na JACAGC010000002.1 <> na Primary Assembly 109326691 na scaffold_m29_p_3 unplaced-scaffold na na JACAGC010000003.1 <> na Primary Assembly 106175956 na scaffold_m29_p_4 unplaced-scaffold na na JACAGC010000004.1 <> na Primary Assembly 105477172 na scaffold_m29_p_5 unplaced-scaffold na na JACAGC010000005.1 <> na Primary Assembly 104325552 na scaffold_m29_p_6 unplaced-scaffold na na JACAGC010000006.1 <> na Primary Assembly 100792546 na scaffold_m29_p_7 unplaced-scaffold na na JACAGC010000007.1 <> na Primary Assembly 100316474 na scaffold_m29_p_8 unplaced-scaffold na na JACAGC010000008.1 <> na Primary Assembly 100195124 na scaffold_m29_p_9 unplaced-scaffold na na JACAGC010000009.1 <> na Primary Assembly 95162710 na scaffold_m29_p_10 unplaced-scaffold na na JACAGC010000010.1 <> na Primary Assembly 91996154 na scaffold_m29_p_11 unplaced-scaffold na na JACAGC010000011.1 <> na Primary Assembly 90147128 na scaffold_m29_p_12 unplaced-scaffold na na JACAGC010000012.1 <> na Primary Assembly 83731598 na scaffold_m29_p_13 unplaced-scaffold na na JACAGC010000013.1 <> na Primary Assembly 72790559 na scaffold_m29_p_14 unplaced-scaffold na na JACAGC010000014.1 <> na Primary Assembly 71474355 na scaffold_m29_p_15 unplaced-scaffold na na JACAGC010000015.1 <> na Primary Assembly 67711423 na scaffold_m29_p_16 unplaced-scaffold na na JACAGC010000016.1 <> na Primary Assembly 66907567 na scaffold_m29_p_17 unplaced-scaffold na na JACAGC010000017.1 <> na Primary Assembly 62624521 na scaffold_m29_p_18 unplaced-scaffold na na JACAGC010000018.1 <> na Primary Assembly 59615945 na scaffold_m29_p_19 unplaced-scaffold na na JACAGC010000019.1 <> na Primary Assembly 57792741 na scaffold_m29_p_20 unplaced-scaffold na na JACAGC010000020.1 <> na Primary Assembly 54308873 na scaffold_m29_p_21 unplaced-scaffold na na JACAGC010000021.1 <> na Primary Assembly 53373475 na scaffold_m29_p_22 unplaced-scaffold na na JACAGC010000022.1 <> na Primary Assembly 51302840 na scaffold_m29_p_23 unplaced-scaffold na na JACAGC010000023.1 <> na Primary Assembly 45527088 na scaffold_m29_p_24 unplaced-scaffold na na JACAGC010000024.1 <> na Primary Assembly 44680555 na scaffold_m29_p_25 unplaced-scaffold na na JACAGC010000025.1 <> na Primary Assembly 40594355 na scaffold_m29_p_26 unplaced-scaffold na na JACAGC010000026.1 <> na Primary Assembly 30127109 na scaffold_m29_p_27 unplaced-scaffold na na JACAGC010000027.1 <> na Primary Assembly 27509160 na scaffold_m29_p_28 unplaced-scaffold na na JACAGC010000028.1 <> na Primary Assembly 16668971 na scaffold_m29_p_29 unplaced-scaffold na na JACAGC010000029.1 <> na Primary Assembly 12935017 na scaffold_m29_p_30 unplaced-scaffold na na JACAGC010000030.1 <> na Primary Assembly 6270196 na scaffold_m29_p_31 unplaced-scaffold na na JACAGC010000031.1 <> na Primary Assembly 3788322 na scaffold_m29_p_32 unplaced-scaffold na na JACAGC010000032.1 <> na Primary Assembly 3243389 na scaffold_m29_p_33 unplaced-scaffold na na JACAGC010000033.1 <> na Primary Assembly 3050883 na scaffold_m29_p_34 unplaced-scaffold na na JACAGC010000034.1 <> na Primary Assembly 2623886 na scaffold_m29_p_35 unplaced-scaffold na na JACAGC010000035.1 <> na Primary Assembly 915478 na scaffold_m29_p_36 unplaced-scaffold na na JACAGC010000036.1 <> na Primary Assembly 694284 na scaffold_m29_p_37 unplaced-scaffold na na JACAGC010000037.1 <> na Primary Assembly 583442 na scaffold_m29_p_38 unplaced-scaffold na na JACAGC010000038.1 <> na Primary Assembly 567993 na scaffold_m29_p_39 unplaced-scaffold na na JACAGC010000039.1 <> na Primary Assembly 499710 na scaffold_m29_p_40 unplaced-scaffold na na JACAGC010000040.1 <> na Primary Assembly 296559 na scaffold_m29_p_41 unplaced-scaffold na na JACAGC010000041.1 <> na Primary Assembly 126491 na scaffold_m29_p_42 unplaced-scaffold na na JACAGC010000042.1 <> na Primary Assembly 100598 na scaffold_m29_p_43 unplaced-scaffold na na JACAGC010000043.1 <> na Primary Assembly 84014 na scaffold_m29_p_44 unplaced-scaffold na na JACAGC010000044.1 <> na Primary Assembly 40023 na scaffold_m29_p_45 unplaced-scaffold na na JACAGC010000045.1 <> na Primary Assembly 36717 na scaffold_m29_p_46 unplaced-scaffold na na JACAGC010000046.1 <> na Primary Assembly 29275 na scaffold_m29_p_47 unplaced-scaffold na na JACAGC010000047.1 <> na Primary Assembly 19026 na scaffold_m29_p_48 unplaced-scaffold na na JACAGC010000048.1 <> na Primary Assembly 18869 na scaffold_m29_p_49 unplaced-scaffold na na JACAGC010000049.1 <> na Primary Assembly 8771 na MT assembled-molecule MT Mitochondrion CM024386.1 <> na non-nuclear 16886 na