track assembly longLabel Assembly shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.assembly.bb type bigBed 6 html html/GCA_014523465.1_CAU_Oori_1.0.assembly searchIndex name searchTrix ixIxx/GCA_014523465.1_CAU_Oori_1.0.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: group map track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.gc5Base.bw html html/GCA_014523465.1_CAU_Oori_1.0.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCA_014523465.1_CAU_Oori_1.0.tanDups track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.tandemDups.bb type bigBed 12 track repeatMasker shortLabel RepeatMasker longLabel RepeatMasker Repetitive Elements type bigRmsk 9 + visibility pack group varRep bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.rmsk.bb maxWindowToDraw 5000000 html html/GCA_014523465.1_CAU_Oori_1.0.repeatMasker track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.simpleRepeat.bb html html/GCA_014523465.1_CAU_Oori_1.0.simpleRepeat track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility pack type bigBed 4 + html html/GCA_014523465.1_CAU_Oori_1.0.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.windowMasker.bb html html/GCA_014523465.1_CAU_Oori_1.0.windowMasker track allGaps shortLabel All Gaps longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps group map visibility dense type bigBed 3 bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.allGaps.bb html html/GCA_014523465.1_CAU_Oori_1.0.allGaps track augustus shortLabel Augustus longLabel Augustus Gene Predictions group genes visibility pack color 180,0,0 type bigGenePred bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.augustus.bb html html/GCA_014523465.1_CAU_Oori_1.0.augustus track xenoRefGene shortLabel RefSeq mRNAs longLabel RefSeq mRNAs mapped to this assembly group rna visibility pack color 180,0,0 type bigGenePred bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.xenoRefGene.bb url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: labelFields name,geneName,geneName2 defaultLabelFields geneName searchIndex name searchTrix ixIxx/GCA_014523465.1_CAU_Oori_1.0.xenoRefGene.ix html html/GCA_014523465.1_CAU_Oori_1.0.xenoRefGene ############################################################################## # GCF_016772045.2 - Asiatic mouflon - Ovis orientalis - taxId: 469796 ############################################################################## track chainNetGCF_016772045.2 compositeTrack on shortLabel Asiatic mouflon Chain/Net longLabel Asiatic mouflon (2020-09-11), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno priority 100.1 color 0,0,0 altColor 100,50,0 type bed 3 sortOrder view=+ otherDb GCF_016772045.2 html html/GCA_014523465.1_CAU_Oori_1.0.chainNet track chainNetGCF_016772045.2Viewchain shortLabel Chain view chain visibility pack parent chainNetGCF_016772045.2 spectrum on track chainGCF_016772045.2 parent chainNetGCF_016772045.2Viewchain subGroups view=chain shortLabel Asiatic mouflon Chain longLabel Asiatic mouflon (2020-09-11) Chained Alignments type bigChain GCF_016772045.2 bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.chainGCF_016772045.2.bb linkDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.chainGCF_016772045.2Link.bb priority 1 track chainSynGCF_016772045.2 parent chainNetGCF_016772045.2Viewchain subGroups view=chain shortLabel Asiatic mouflon synChain longLabel Asiatic mouflon (2020-09-11) Syntenic Chained Alignments type bigChain GCF_016772045.2 bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.chainSynGCF_016772045.2.bb linkDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.chainSynGCF_016772045.2Link.bb priority 2 track chainRBestGCF_016772045.2 parent chainNetGCF_016772045.2Viewchain subGroups view=chain shortLabel Asiatic mouflon rbChain longLabel Asiatic mouflon (2020-09-11) Reciprocal Best Chained Alignments type bigChain GCF_016772045.2 bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.chainRBestGCF_016772045.2.bb linkDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.chainRBestGCF_016772045.2Link.bb priority 3 track chainLiftOverGCF_016772045.2 parent chainNetGCF_016772045.2Viewchain subGroups view=chain shortLabel Asiatic mouflon loChain longLabel Asiatic mouflon (2020-09-11) Lift Over Chained Alignments type bigChain GCF_016772045.2 bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.chainLiftOverGCF_016772045.2.bb linkDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.chainLiftOverGCF_016772045.2Link.bb priority 4 track mafNetGCF_016772045.2Viewnet shortLabel Net view net visibility full parent chainNetGCF_016772045.2 track netGCF_016772045.2 parent mafNetGCF_016772045.2Viewnet subGroups view=net shortLabel Asiatic mouflon net longLabel Asiatic mouflon (2020-09-11) Net Alignment type bigMaf bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.GCF_016772045.2.net.bb summary bbi/GCA_014523465.1_CAU_Oori_1.0.GCF_016772045.2.net.summary.bb speciesOrder GCF_016772045.2 priority 5 track synNetGCF_016772045.2 parent mafNetGCF_016772045.2Viewnet subGroups view=net shortLabel Asiatic mouflon synNet longLabel Asiatic mouflon (2020-09-11) Syntenic Net Alignment type bigMaf bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.GCF_016772045.2.synNet.bb summary bbi/GCA_014523465.1_CAU_Oori_1.0.GCF_016772045.2.synNet.summary.bb speciesOrder GCF_016772045.2 priority 6 track rbestNetGCF_016772045.2 parent mafNetGCF_016772045.2Viewnet subGroups view=net shortLabel Asiatic mouflon rbestNet longLabel Asiatic mouflon (2020-09-11) Reciprocal Best Net Alignment type bigMaf bigDataUrl bbi/GCA_014523465.1_CAU_Oori_1.0.GCF_016772045.2.rbestNet.bb summary bbi/GCA_014523465.1_CAU_Oori_1.0.GCF_016772045.2.rbestNet.summary.bb speciesOrder GCF_016772045.2 priority 7