# Assembly name: mRatBN7.2 # Organism name: Rattus norvegicus (Norway rat) # Infraspecific name: strain=BN/NHsdMcwi # Sex: male # Taxid: 10116 # BioSample: SAMN16261960 # BioProject: PRJNA662791 # Submitter: Wellcome Sanger Institute # Date: 2020-11-10 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: minor # Assembly level: Chromosome # Genome representation: full # WGS project: JACYVU01 # Assembly method: FALCON-Unzip v. 2020 # Expected final version: yes # Genome coverage: 92.0x # Sequencing technology: PacBio Sequel; 10X Genomics Chromium; BioNano; Arima Hi-C # Excluded from RefSeq: superseded by newer assembly for species # GenBank assembly accession: GCA_015227675.2 # RefSeq assembly accession: GCF_015227675.2 # RefSeq assembly and GenBank assemblies identical: yes # Linked assembly: GCA_015244455.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_015227685.1 GCF_015227685.1 Primary Assembly ## GCA_000002045.1 GCF_000002045.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name 1 assembled-molecule 1 Chromosome CM026974.1 = NC_051336.1 Primary Assembly 260522016 na 2 assembled-molecule 2 Chromosome CM026975.1 = NC_051337.1 Primary Assembly 249053267 na 3 assembled-molecule 3 Chromosome CM026976.1 = NC_051338.1 Primary Assembly 169034231 na 4 assembled-molecule 4 Chromosome CM026977.1 = NC_051339.1 Primary Assembly 182687754 na 5 assembled-molecule 5 Chromosome CM026978.1 = NC_051340.1 Primary Assembly 166875058 na 6 assembled-molecule 6 Chromosome CM026979.1 = NC_051341.1 Primary Assembly 140994061 na 7 assembled-molecule 7 Chromosome CM026980.1 = NC_051342.1 Primary Assembly 135012528 na 8 assembled-molecule 8 Chromosome CM026981.1 = NC_051343.1 Primary Assembly 123900184 na 9 assembled-molecule 9 Chromosome CM026982.1 = NC_051344.1 Primary Assembly 114175309 na 10 assembled-molecule 10 Chromosome CM026983.1 = NC_051345.1 Primary Assembly 107211142 na 11 assembled-molecule 11 Chromosome CM026984.1 = NC_051346.1 Primary Assembly 86241447 na 12 assembled-molecule 12 Chromosome CM026985.1 = NC_051347.1 Primary Assembly 46669029 na 13 assembled-molecule 13 Chromosome CM026986.1 = NC_051348.1 Primary Assembly 106807694 na 14 assembled-molecule 14 Chromosome CM026987.1 = NC_051349.1 Primary Assembly 104886043 na 15 assembled-molecule 15 Chromosome CM026988.1 = NC_051350.1 Primary Assembly 101769107 na 16 assembled-molecule 16 Chromosome CM026989.1 = NC_051351.1 Primary Assembly 84729064 na 17 assembled-molecule 17 Chromosome CM026990.1 = NC_051352.1 Primary Assembly 86533673 na 18 assembled-molecule 18 Chromosome CM026991.1 = NC_051353.1 Primary Assembly 83828827 na 19 assembled-molecule 19 Chromosome CM026992.1 = NC_051354.1 Primary Assembly 57337602 na 20 assembled-molecule 20 Chromosome CM026993.1 = NC_051355.1 Primary Assembly 54435887 na X assembled-molecule X Chromosome CM026994.1 = NC_051356.1 Primary Assembly 152453651 na Y assembled-molecule Y Chromosome CM026995.1 = NC_051357.1 Primary Assembly 18315841 na 12_unloc2 unlocalized-scaffold 12 Chromosome JACYVU010000238.1 = NW_023637712.1 Primary Assembly 210070 na 12_unloc1 unlocalized-scaffold 12 Chromosome MU150189.1 = NW_023637711.1 Primary Assembly 1402623 na 19_unloc1 unlocalized-scaffold 19 Chromosome JACYVU010000315.1 = NW_023637713.1 Primary Assembly 23956 na 19_unloc2 unlocalized-scaffold 19 Chromosome JACYVU010000316.1 = NW_023637714.1 Primary Assembly 23219 na 19_unloc3 unlocalized-scaffold 19 Chromosome JACYVU010000317.1 = NW_023637715.1 Primary Assembly 19663 na 19_unloc4 unlocalized-scaffold 19 Chromosome JACYVU010000318.1 = NW_023637716.1 Primary Assembly 14256 na 19_unloc5 unlocalized-scaffold 19 Chromosome JACYVU010000319.1 = NW_023637717.1 Primary Assembly 202997 na Y_unloc1 unlocalized-scaffold Y Chromosome JACYVU010000493.1 = NW_023637718.1 Primary Assembly 444596 na Y_unloc2 unlocalized-scaffold Y Chromosome MU150190.1 = NW_023637719.1 Primary Assembly 573231 na Y_unloc3 unlocalized-scaffold Y Chromosome MU150191.1 = NW_023637720.1 Primary Assembly 1794995 na Y_unloc4 unlocalized-scaffold Y Chromosome MU150192.1 = NW_023637721.1 Primary Assembly 273924 na Y_unloc5 unlocalized-scaffold Y Chromosome MU150193.1 = NW_023637722.1 Primary Assembly 383091 na scaffold_29 unplaced-scaffold na na JACYVU010000587.1 = NW_023637729.1 Primary Assembly 20806 na scaffold_30 unplaced-scaffold na na JACYVU010000588.1 = NW_023637730.1 Primary Assembly 3527 na scaffold_31 unplaced-scaffold na na JACYVU010000589.1 = NW_023637731.1 Primary Assembly 36943 na scaffold_32 unplaced-scaffold na na JACYVU010000590.1 = NW_023637732.1 Primary Assembly 59774 na scaffold_34 unplaced-scaffold na na JACYVU010000595.1 = NW_023637734.1 Primary Assembly 55443 na scaffold_35 unplaced-scaffold na na JACYVU010000596.1 = NW_023637735.1 Primary Assembly 55703 na scaffold_36 unplaced-scaffold na na JACYVU010000597.1 = NW_023637736.1 Primary Assembly 55030 na scaffold_37 unplaced-scaffold na na JACYVU010000598.1 = NW_023637737.1 Primary Assembly 54054 na scaffold_38 unplaced-scaffold na na JACYVU010000599.1 = NW_023637738.1 Primary Assembly 52490 na scaffold_39 unplaced-scaffold na na JACYVU010000600.1 = NW_023637739.1 Primary Assembly 52429 na scaffold_40 unplaced-scaffold na na JACYVU010000601.1 = NW_023637740.1 Primary Assembly 53477 na scaffold_41 unplaced-scaffold na na JACYVU010000602.1 = NW_023637741.1 Primary Assembly 51231 na scaffold_42 unplaced-scaffold na na JACYVU010000603.1 = NW_023637742.1 Primary Assembly 50135 na scaffold_43 unplaced-scaffold na na JACYVU010000604.1 = NW_023637743.1 Primary Assembly 48867 na scaffold_44 unplaced-scaffold na na JACYVU010000605.1 = NW_023637744.1 Primary Assembly 48649 na scaffold_45 unplaced-scaffold na na JACYVU010000606.1 = NW_023637745.1 Primary Assembly 47994 na scaffold_46 unplaced-scaffold na na JACYVU010000607.1 = NW_023637746.1 Primary Assembly 47167 na scaffold_47 unplaced-scaffold na na JACYVU010000608.1 = NW_023637747.1 Primary Assembly 46828 na scaffold_48 unplaced-scaffold na na JACYVU010000609.1 = NW_023637748.1 Primary Assembly 44754 na scaffold_49 unplaced-scaffold na na JACYVU010000610.1 = NW_023637749.1 Primary Assembly 44011 na scaffold_50 unplaced-scaffold na na JACYVU010000611.1 = NW_023637750.1 Primary Assembly 43227 na scaffold_51 unplaced-scaffold na na JACYVU010000612.1 = NW_023637751.1 Primary Assembly 42710 na scaffold_52 unplaced-scaffold na na JACYVU010000613.1 = NW_023637752.1 Primary Assembly 42392 na scaffold_53 unplaced-scaffold na na JACYVU010000614.1 = NW_023637753.1 Primary Assembly 41807 na scaffold_56 unplaced-scaffold na na JACYVU010000619.1 = NW_023637756.1 Primary Assembly 39806 na scaffold_57 unplaced-scaffold na na JACYVU010000620.1 = NW_023637757.1 Primary Assembly 39355 na scaffold_58 unplaced-scaffold na na JACYVU010000621.1 = NW_023637758.1 Primary Assembly 38789 na scaffold_59 unplaced-scaffold na na JACYVU010000622.1 = NW_023637759.1 Primary Assembly 38316 na scaffold_60 unplaced-scaffold na na JACYVU010000623.1 = NW_023637760.1 Primary Assembly 37756 na scaffold_61 unplaced-scaffold na na JACYVU010000624.1 = NW_023637761.1 Primary Assembly 37900 na scaffold_62 unplaced-scaffold na na JACYVU010000625.1 = NW_023637762.1 Primary Assembly 37835 na scaffold_63 unplaced-scaffold na na JACYVU010000626.1 = NW_023637763.1 Primary Assembly 37503 na scaffold_65 unplaced-scaffold na na JACYVU010000629.1 = NW_023637765.1 Primary Assembly 36674 na scaffold_66 unplaced-scaffold na na JACYVU010000630.1 = NW_023637766.1 Primary Assembly 36093 na scaffold_67 unplaced-scaffold na na JACYVU010000631.1 = NW_023637767.1 Primary Assembly 35514 na scaffold_68 unplaced-scaffold na na JACYVU010000632.1 = NW_023637768.1 Primary Assembly 35635 na scaffold_69 unplaced-scaffold na na JACYVU010000633.1 = NW_023637769.1 Primary Assembly 35019 na scaffold_70 unplaced-scaffold na na JACYVU010000634.1 = NW_023637770.1 Primary Assembly 34854 na scaffold_71 unplaced-scaffold na na JACYVU010000635.1 = NW_023637771.1 Primary Assembly 34273 na scaffold_72 unplaced-scaffold na na JACYVU010000636.1 = NW_023637772.1 Primary Assembly 34141 na scaffold_73 unplaced-scaffold na na JACYVU010000637.1 = NW_023637773.1 Primary Assembly 32456 na scaffold_74 unplaced-scaffold na na JACYVU010000638.1 = NW_023637774.1 Primary Assembly 31866 na scaffold_75 unplaced-scaffold na na JACYVU010000639.1 = NW_023637775.1 Primary Assembly 31814 na scaffold_76 unplaced-scaffold na na JACYVU010000640.1 = NW_023637776.1 Primary Assembly 30923 na scaffold_77 unplaced-scaffold na na JACYVU010000641.1 = NW_023637777.1 Primary Assembly 30905 na scaffold_78 unplaced-scaffold na na JACYVU010000642.1 = NW_023637778.1 Primary Assembly 30536 na scaffold_79 unplaced-scaffold na na JACYVU010000643.1 = NW_023637779.1 Primary Assembly 30026 na scaffold_80 unplaced-scaffold na na JACYVU010000644.1 = NW_023637780.1 Primary Assembly 29614 na scaffold_81 unplaced-scaffold na na JACYVU010000645.1 = NW_023637781.1 Primary Assembly 29394 na scaffold_82 unplaced-scaffold na na JACYVU010000646.1 = NW_023637782.1 Primary Assembly 29369 na scaffold_83 unplaced-scaffold na na JACYVU010000647.1 = NW_023637783.1 Primary Assembly 28870 na scaffold_84 unplaced-scaffold na na JACYVU010000648.1 = NW_023637784.1 Primary Assembly 28513 na scaffold_85 unplaced-scaffold na na JACYVU010000649.1 = NW_023637785.1 Primary Assembly 27249 na scaffold_87 unplaced-scaffold na na JACYVU010000652.1 = NW_023637787.1 Primary Assembly 25016 na scaffold_88 unplaced-scaffold na na JACYVU010000653.1 = NW_023637788.1 Primary Assembly 24935 na scaffold_89 unplaced-scaffold na na JACYVU010000654.1 = NW_023637789.1 Primary Assembly 24820 na scaffold_90 unplaced-scaffold na na JACYVU010000655.1 = NW_023637790.1 Primary Assembly 24952 na scaffold_92 unplaced-scaffold na na JACYVU010000658.1 = NW_023637792.1 Primary Assembly 23476 na scaffold_94 unplaced-scaffold na na JACYVU010000661.1 = NW_023637794.1 Primary Assembly 22722 na scaffold_95 unplaced-scaffold na na JACYVU010000662.1 = NW_023637795.1 Primary Assembly 22560 na scaffold_96 unplaced-scaffold na na JACYVU010000663.1 = NW_023637796.1 Primary Assembly 19399 na scaffold_97 unplaced-scaffold na na JACYVU010000664.1 = NW_023637797.1 Primary Assembly 17659 na scaffold_98 unplaced-scaffold na na JACYVU010000665.1 = NW_023637798.1 Primary Assembly 16920 na scaffold_100 unplaced-scaffold na na JACYVU010000668.1 = NW_023637800.1 Primary Assembly 12850 na scaffold_101 unplaced-scaffold na na JACYVU010000669.1 = NW_023637801.1 Primary Assembly 12585 na scaffold_102 unplaced-scaffold na na JACYVU010000670.1 = NW_023637802.1 Primary Assembly 11983 na scaffold_103 unplaced-scaffold na na JACYVU010000671.1 = NW_023637803.1 Primary Assembly 11810 na scaffold_105 unplaced-scaffold na na JACYVU010000674.1 = NW_023637805.1 Primary Assembly 10867 na scaffold_106 unplaced-scaffold na na JACYVU010000675.1 = NW_023637806.1 Primary Assembly 10646 na scaffold_107 unplaced-scaffold na na JACYVU010000676.1 = NW_023637807.1 Primary Assembly 10060 na scaffold_108 unplaced-scaffold na na JACYVU010000677.1 = NW_023637808.1 Primary Assembly 9310 na scaffold_109 unplaced-scaffold na na JACYVU010000678.1 = NW_023637809.1 Primary Assembly 8567 na scaffold_110 unplaced-scaffold na na JACYVU010000679.1 = NW_023637810.1 Primary Assembly 8270 na scaffold_111 unplaced-scaffold na na JACYVU010000680.1 = NW_023637811.1 Primary Assembly 8066 na scaffold_112 unplaced-scaffold na na JACYVU010000681.1 = NW_023637812.1 Primary Assembly 7648 na scaffold_113 unplaced-scaffold na na JACYVU010000682.1 = NW_023637813.1 Primary Assembly 7188 na scaffold_117 unplaced-scaffold na na JACYVU010000689.1 = NW_023637817.1 Primary Assembly 5450 na scaffold_118 unplaced-scaffold na na JACYVU010000690.1 = NW_023637818.1 Primary Assembly 3849 na scaffold_120 unplaced-scaffold na na JACYVU010000693.1 = NW_023637820.1 Primary Assembly 3570 na scaffold_122 unplaced-scaffold na na JACYVU010000696.1 = NW_023637822.1 Primary Assembly 3310 na scaffold_124 unplaced-scaffold na na JACYVU010000699.1 = NW_023637824.1 Primary Assembly 2119 na scaffold_125 unplaced-scaffold na na JACYVU010000700.1 = NW_023637825.1 Primary Assembly 1272 na scaffold_126 unplaced-scaffold na na JACYVU010000701.1 = NW_023637826.1 Primary Assembly 972 na scaffold_127 unplaced-scaffold na na JACYVU010000702.1 = NW_023637827.1 Primary Assembly 779 na scaffold_128 unplaced-scaffold na na JACYVU010000703.1 = NW_023637828.1 Primary Assembly 746 na scaffold_129 unplaced-scaffold na na JACYVU010000704.1 = NW_023637829.1 Primary Assembly 118324 na scaffold_130 unplaced-scaffold na na JACYVU010000705.1 = NW_023637830.1 Primary Assembly 299950 na scaffold_131 unplaced-scaffold na na JACYVU010000706.1 = NW_023637831.1 Primary Assembly 287783 na scaffold_132 unplaced-scaffold na na JACYVU010000707.1 = NW_023637832.1 Primary Assembly 267602 na scaffold_140 unplaced-scaffold na na JACYVU010000727.1 = NW_023637840.1 Primary Assembly 109622 na scaffold_141 unplaced-scaffold na na JACYVU010000728.1 = NW_023637841.1 Primary Assembly 102432 na scaffold_143 unplaced-scaffold na na JACYVU010000731.1 = NW_023637843.1 Primary Assembly 97491 na scaffold_144 unplaced-scaffold na na JACYVU010000732.1 = NW_023637844.1 Primary Assembly 94865 na scaffold_146 unplaced-scaffold na na JACYVU010000735.1 = NW_023637846.1 Primary Assembly 92577 na scaffold_147 unplaced-scaffold na na JACYVU010000736.1 = NW_023637847.1 Primary Assembly 91108 na scaffold_148 unplaced-scaffold na na JACYVU010000737.1 = NW_023637848.1 Primary Assembly 90477 na scaffold_149 unplaced-scaffold na na JACYVU010000738.1 = NW_023637849.1 Primary Assembly 90482 na scaffold_150 unplaced-scaffold na na JACYVU010000739.1 = NW_023637850.1 Primary Assembly 89891 na scaffold_151 unplaced-scaffold na na JACYVU010000740.1 = NW_023637851.1 Primary Assembly 86921 na scaffold_153 unplaced-scaffold na na JACYVU010000743.1 = NW_023637853.1 Primary Assembly 76773 na scaffold_154 unplaced-scaffold na na JACYVU010000744.1 = NW_023637854.1 Primary Assembly 75943 na scaffold_157 unplaced-scaffold na na JACYVU010000749.1 = NW_023637857.1 Primary Assembly 69993 na scaffold_158 unplaced-scaffold na na JACYVU010000750.1 = NW_023637858.1 Primary Assembly 69855 na scaffold_160 unplaced-scaffold na na JACYVU010000753.1 = NW_023637860.1 Primary Assembly 67574 na scaffold_161 unplaced-scaffold na na JACYVU010000754.1 = NW_023637861.1 Primary Assembly 66861 na scaffold_162 unplaced-scaffold na na JACYVU010000755.1 = NW_023637862.1 Primary Assembly 62367 na scaffold_163 unplaced-scaffold na na JACYVU010000756.1 = NW_023637863.1 Primary Assembly 62110 na scaffold_23 unplaced-scaffold na na MU150194.1 = NW_023637723.1 Primary Assembly 648519 na scaffold_24 unplaced-scaffold na na MU150195.1 = NW_023637724.1 Primary Assembly 529129 na scaffold_25 unplaced-scaffold na na MU150196.1 = NW_023637725.1 Primary Assembly 333848 na scaffold_26 unplaced-scaffold na na MU150197.1 = NW_023637726.1 Primary Assembly 318964 na scaffold_27 unplaced-scaffold na na MU150198.1 = NW_023637727.1 Primary Assembly 241438 na scaffold_28 unplaced-scaffold na na MU150199.1 = NW_023637728.1 Primary Assembly 231725 na scaffold_33 unplaced-scaffold na na MU150200.1 = NW_023637733.1 Primary Assembly 58986 na scaffold_54 unplaced-scaffold na na MU150201.1 = NW_023637754.1 Primary Assembly 41029 na scaffold_55 unplaced-scaffold na na MU150202.1 = NW_023637755.1 Primary Assembly 40107 na scaffold_64 unplaced-scaffold na na MU150203.1 = NW_023637764.1 Primary Assembly 37612 na scaffold_86 unplaced-scaffold na na MU150204.1 = NW_023637786.1 Primary Assembly 27089 na scaffold_91 unplaced-scaffold na na MU150205.1 = NW_023637791.1 Primary Assembly 23654 na scaffold_93 unplaced-scaffold na na MU150206.1 = NW_023637793.1 Primary Assembly 23161 na scaffold_99 unplaced-scaffold na na MU150207.1 = NW_023637799.1 Primary Assembly 14320 na scaffold_104 unplaced-scaffold na na MU150208.1 = NW_023637804.1 Primary Assembly 11854 na scaffold_114 unplaced-scaffold na na MU150209.1 = NW_023637814.1 Primary Assembly 6125 na scaffold_115 unplaced-scaffold na na MU150210.1 = NW_023637815.1 Primary Assembly 5684 na scaffold_116 unplaced-scaffold na na MU150211.1 = NW_023637816.1 Primary Assembly 5530 na scaffold_119 unplaced-scaffold na na MU150212.1 = NW_023637819.1 Primary Assembly 3655 na scaffold_121 unplaced-scaffold na na MU150213.1 = NW_023637821.1 Primary Assembly 3369 na scaffold_123 unplaced-scaffold na na MU150214.1 = NW_023637823.1 Primary Assembly 3242 na scaffold_133 unplaced-scaffold na na MU150215.1 = NW_023637833.1 Primary Assembly 201039 na scaffold_134 unplaced-scaffold na na MU150216.1 = NW_023637834.1 Primary Assembly 159729 na scaffold_135 unplaced-scaffold na na MU150217.1 = NW_023637835.1 Primary Assembly 152829 na scaffold_136 unplaced-scaffold na na MU150218.1 = NW_023637836.1 Primary Assembly 149942 na scaffold_137 unplaced-scaffold na na MU150219.1 = NW_023637837.1 Primary Assembly 135739 na scaffold_138 unplaced-scaffold na na MU150220.1 = NW_023637838.1 Primary Assembly 123749 na scaffold_139 unplaced-scaffold na na MU150221.1 = NW_023637839.1 Primary Assembly 113378 na scaffold_142 unplaced-scaffold na na MU150222.1 = NW_023637842.1 Primary Assembly 100634 na scaffold_145 unplaced-scaffold na na MU150223.1 = NW_023637845.1 Primary Assembly 94425 na scaffold_152 unplaced-scaffold na na MU150224.1 = NW_023637852.1 Primary Assembly 80668 na scaffold_155 unplaced-scaffold na na MU150225.1 = NW_023637855.1 Primary Assembly 72661 na scaffold_156 unplaced-scaffold na na MU150226.1 = NW_023637856.1 Primary Assembly 70979 na scaffold_159 unplaced-scaffold na na MU150227.1 = NW_023637859.1 Primary Assembly 68744 na MT assembled-molecule MT Mitochondrion AY172581.1 = NC_001665.2 non-nuclear 16313 chrM