RepeatModeler Version 2.0.4
===========================
Using output directory = /dev/shm/rModeler.58pEov/RM_23711.WedSep181250432024
Search Engine = rmblast 2.13.0+
Threads = 32
Dependencies: TRF 4.09, RECON , RepeatScout 1.0.6, RepeatMasker 4.1.4
LTR Structural Analysis: Disabled [use -LTRStruct to enable]
Random Number Seed: 1726689042
Database = /dev/shm/rModeler.58pEov/GCA_015245375.1_ASM1524537v1   - Sequences = 8
  - Bases = 9122263
Storage Throughput = excellent ( 1140.23 MB/s )


RepeatModeler Round # 1
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 40000000 bp
   - Final Sample Size = 9122109 bp ( 9122109 non ambiguous )
   - Num Contigs Represented = 8
   - Sequence extraction : 00:00:01 (hh:mm:ss) Elapsed Time
 -- Running RepeatScout on the sequences...
   - RepeatScout: 00:06:24 (hh:mm:ss) Elapsed Time
Round Time: 00:06:31 (hh:mm:ss) Elapsed Time : 0 families discovered.


RepeatModeler Round # 2
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 10000000 bp
   - Sequence extraction : 00:00:01 (hh:mm:ss) Elapsed Time
 -- Running TRFMask on the sequence...
   - TRFMask time 00:00:28 (hh:mm:ss) Elapsed Time
 -- Sample Stats:
       Sample Size 9122109 bp
       Num Contigs Represented = 8
       Non ambiguous bp:
             Initial: 9122109 bp
             After Masking: 9034826 bp
             Masked: 0.96 % 
 -- Input Database Coverage: 9122109 bp out of 9122263 bp ( 100.00 % )
Sampling Time: 00:00:30 (hh:mm:ss) Elapsed Time
Running all-by-other comparisons...
  - Total Comparisons = 26796
Comparison Time: 00:09:11 (hh:mm:ss) Elapsed Time, 1021 HSPs Collected
Number of families returned by RECON: 331
Round Time: 00:09:47 (hh:mm:ss) Elapsed Time : 1 families discovered.

RepeatScout/RECON discovery complete: 1 families found


Classification Time: 00:00:03 (hh:mm:ss) Elapsed Time


Program Time: 00:16:21 (hh:mm:ss) Elapsed Time