# Assembly name: VPISU_Cqui_1.0_alt_paternal # Organism name: Culex quinquefasciatus (southern house mosquito) # Infraspecific name: strain=JHB # Sex: male # Taxid: 7176 # BioSample: SAMN15480861 # BioProject: PRJNA661262 # Submitter: None # Date: 2020-12-03 # Assembly type: alternate-pseudohaplotype # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JADDTQ01 # Assembly method: canu v. 1.8 # Expected final version: yes # Genome coverage: 76.0x # Sequencing technology: Oxford Nanopore MinION; Oxford Nanopore PromethION; Illumina; Bionano DLS; Hi-C # Excluded from RefSeq: genome length too small # GenBank assembly accession: GCA_015732745.1 # Linked assembly: GCA_015732765.1 (principal pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_015732755.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name PGA_scaffold_100__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000001.1 <> na Primary Assembly 24999 na PGA_scaffold_101__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000002.1 <> na Primary Assembly 44691 na PGA_scaffold_10__1_contigs__length_2506720 unplaced-scaffold na na JADDTQ010000003.1 <> na Primary Assembly 2461469 na PGA_scaffold_103__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000004.1 <> na Primary Assembly 49999 na PGA_scaffold_104__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000005.1 <> na Primary Assembly 49999 na PGA_scaffold_105__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000006.1 <> na Primary Assembly 49999 na PGA_scaffold_106__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000007.1 <> na Primary Assembly 24999 na PGA_scaffold_107__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000008.1 <> na Primary Assembly 19805 na PGA_scaffold_109__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000009.1 <> na Primary Assembly 17911 na PGA_scaffold_111__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000010.1 <> na Primary Assembly 21916 na PGA_scaffold_11__1_contigs__length_69999 unplaced-scaffold na na JADDTQ010000011.1 <> na Primary Assembly 56489 na PGA_scaffold_113__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000012.1 <> na Primary Assembly 19946 na PGA_scaffold_115__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000013.1 <> na Primary Assembly 16972 na PGA_scaffold_117__1_contigs__length_124999 unplaced-scaffold na na JADDTQ010000014.1 <> na Primary Assembly 120183 na PGA_scaffold_118__1_contigs__length_124999 unplaced-scaffold na na JADDTQ010000015.1 <> na Primary Assembly 114291 na PGA_scaffold_119__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000016.1 <> na Primary Assembly 45528 na PGA_scaffold_120__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000017.1 <> na Primary Assembly 24999 na PGA_scaffold_122__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000018.1 <> na Primary Assembly 45441 na PGA_scaffold_124__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000019.1 <> na Primary Assembly 49353 na PGA_scaffold_126__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000020.1 <> na Primary Assembly 49670 na PGA_scaffold_128__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000021.1 <> na Primary Assembly 48837 na PGA_scaffold_130__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000022.1 <> na Primary Assembly 42165 na PGA_scaffold_132__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000023.1 <> na Primary Assembly 42874 na PGA_scaffold_133__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000024.1 <> na Primary Assembly 15539 na PGA_scaffold_134__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000025.1 <> na Primary Assembly 24605 na PGA_scaffold_135__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000026.1 <> na Primary Assembly 20490 na PGA_scaffold_139__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000027.1 <> na Primary Assembly 22480 na PGA_scaffold_14__1_contigs__length_514999 unplaced-scaffold na na JADDTQ010000028.1 <> na Primary Assembly 514999 na PGA_scaffold_142__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000029.1 <> na Primary Assembly 24999 na PGA_scaffold_143__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000030.1 <> na Primary Assembly 22748 na PGA_scaffold_144__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000031.1 <> na Primary Assembly 23762 na PGA_scaffold_145__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000032.1 <> na Primary Assembly 22990 na PGA_scaffold_147__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000033.1 <> na Primary Assembly 45727 na PGA_scaffold_148__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000034.1 <> na Primary Assembly 48307 na PGA_scaffold_149__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000035.1 <> na Primary Assembly 45654 na PGA_scaffold_150__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000036.1 <> na Primary Assembly 31709 na PGA_scaffold_151__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000037.1 <> na Primary Assembly 44679 na PGA_scaffold_15__1_contigs__length_259368 unplaced-scaffold na na JADDTQ010000038.1 <> na Primary Assembly 258543 na PGA_scaffold_152__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000039.1 <> na Primary Assembly 46350 na PGA_scaffold_153__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000040.1 <> na Primary Assembly 45720 na PGA_scaffold_155__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000041.1 <> na Primary Assembly 45319 na PGA_scaffold_156__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000042.1 <> na Primary Assembly 34714 na PGA_scaffold_157__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000043.1 <> na Primary Assembly 47215 na PGA_scaffold_158__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000044.1 <> na Primary Assembly 38353 na PGA_scaffold_161__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000045.1 <> na Primary Assembly 15769 na PGA_scaffold_16__1_contigs__length_2766129 unplaced-scaffold na na JADDTQ010000046.1 <> na Primary Assembly 2766130 na PGA_scaffold_162__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000047.1 <> na Primary Assembly 24999 na PGA_scaffold_163__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000048.1 <> na Primary Assembly 24999 na PGA_scaffold_164__1_contigs__length_3919694 unplaced-scaffold na na JADDTQ010000049.1 <> na Primary Assembly 3891416 na PGA_scaffold_165__1_contigs__length_1335221 unplaced-scaffold na na JADDTQ010000050.1 <> na Primary Assembly 1335221 na PGA_scaffold_17__1_contigs__length_5282962 unplaced-scaffold na na JADDTQ010000051.1 <> na Primary Assembly 5282963 na PGA_scaffold_18__1_contigs__length_2972179 unplaced-scaffold na na JADDTQ010000052.1 <> na Primary Assembly 2972180 na PGA_scaffold_19__1_contigs__length_5656204 unplaced-scaffold na na JADDTQ010000053.1 <> na Primary Assembly 5656205 na PGA_scaffold_25__1_contigs__length_939661 unplaced-scaffold na na JADDTQ010000054.1 <> na Primary Assembly 939661 na PGA_scaffold_26__1_contigs__length_2139999 unplaced-scaffold na na JADDTQ010000055.1 <> na Primary Assembly 2139999 na PGA_scaffold_28__1_contigs__length_164999 unplaced-scaffold na na JADDTQ010000056.1 <> na Primary Assembly 164999 na PGA_scaffold_30__1_contigs__length_272165 unplaced-scaffold na na JADDTQ010000057.1 <> na Primary Assembly 272166 na PGA_scaffold_31__1_contigs__length_9131883 unplaced-scaffold na na JADDTQ010000058.1 <> na Primary Assembly 9131884 na PGA_scaffold_32__1_contigs__length_1143585 unplaced-scaffold na na JADDTQ010000059.1 <> na Primary Assembly 1143585 na PGA_scaffold_33__1_contigs__length_3201235 unplaced-scaffold na na JADDTQ010000060.1 <> na Primary Assembly 3201236 na PGA_scaffold_34__1_contigs__length_5138337 unplaced-scaffold na na JADDTQ010000061.1 <> na Primary Assembly 5138338 na PGA_scaffold_35__1_contigs__length_9762292 unplaced-scaffold na na JADDTQ010000062.1 <> na Primary Assembly 9762292 na PGA_scaffold_37__1_contigs__length_139777 unplaced-scaffold na na JADDTQ010000063.1 <> na Primary Assembly 139777 na PGA_scaffold_39__1_contigs__length_499999 unplaced-scaffold na na JADDTQ010000064.1 <> na Primary Assembly 460684 na PGA_scaffold_40__1_contigs__length_1146484 unplaced-scaffold na na JADDTQ010000065.1 <> na Primary Assembly 1146485 na PGA_scaffold_41__1_contigs__length_9004999 unplaced-scaffold na na JADDTQ010000066.1 <> na Primary Assembly 8976325 na PGA_scaffold_4__1_contigs__length_2085158 unplaced-scaffold na na JADDTQ010000067.1 <> na Primary Assembly 2085159 na PGA_scaffold_42__1_contigs__length_2337335 unplaced-scaffold na na JADDTQ010000068.1 <> na Primary Assembly 2337336 na PGA_scaffold_43__1_contigs__length_5087492 unplaced-scaffold na na JADDTQ010000069.1 <> na Primary Assembly 5087493 na PGA_scaffold_44__1_contigs__length_2845441 unplaced-scaffold na na JADDTQ010000070.1 <> na Primary Assembly 2845442 na PGA_scaffold_45__1_contigs__length_531458 unplaced-scaffold na na JADDTQ010000071.1 <> na Primary Assembly 531459 na PGA_scaffold_46__1_contigs__length_492014 unplaced-scaffold na na JADDTQ010000072.1 <> na Primary Assembly 492015 na PGA_scaffold_47__1_contigs__length_1847840 unplaced-scaffold na na JADDTQ010000073.1 <> na Primary Assembly 1847841 na PGA_scaffold_48__1_contigs__length_2345727 unplaced-scaffold na na JADDTQ010000074.1 <> na Primary Assembly 2345728 na PGA_scaffold_49__1_contigs__length_2946871 unplaced-scaffold na na JADDTQ010000075.1 <> na Primary Assembly 2946872 na PGA_scaffold_50__1_contigs__length_2436244 unplaced-scaffold na na JADDTQ010000076.1 <> na Primary Assembly 2436245 na PGA_scaffold_51__1_contigs__length_1237312 unplaced-scaffold na na JADDTQ010000077.1 <> na Primary Assembly 1237313 na PGA_scaffold_5__1_contigs__length_2611201 unplaced-scaffold na na JADDTQ010000078.1 <> na Primary Assembly 2595899 na PGA_scaffold_54__1_contigs__length_10388841 unplaced-scaffold na na JADDTQ010000079.1 <> na Primary Assembly 10332399 na PGA_scaffold_55__1_contigs__length_3136863 unplaced-scaffold na na JADDTQ010000080.1 <> na Primary Assembly 3136863 na PGA_scaffold_56__1_contigs__length_9898854 unplaced-scaffold na na JADDTQ010000081.1 <> na Primary Assembly 9898854 na PGA_scaffold_57__1_contigs__length_24330939 unplaced-scaffold na na JADDTQ010000082.1 <> na Primary Assembly 24305878 na PGA_scaffold_6__1_contigs__length_2421338 unplaced-scaffold na na JADDTQ010000083.1 <> na Primary Assembly 2421339 na PGA_scaffold_63__1_contigs__length_34999 unplaced-scaffold na na JADDTQ010000084.1 <> na Primary Assembly 15973 na PGA_scaffold_7__1_contigs__length_133996 unplaced-scaffold na na JADDTQ010000085.1 <> na Primary Assembly 133997 na PGA_scaffold_74__1_contigs__length_2960828 unplaced-scaffold na na JADDTQ010000086.1 <> na Primary Assembly 2960829 na PGA_scaffold_75__1_contigs__length_7325056 unplaced-scaffold na na JADDTQ010000087.1 <> na Primary Assembly 7325057 na PGA_scaffold_76__1_contigs__length_2846756 unplaced-scaffold na na JADDTQ010000088.1 <> na Primary Assembly 2846757 na PGA_scaffold_77__1_contigs__length_2115592 unplaced-scaffold na na JADDTQ010000089.1 <> na Primary Assembly 2115593 na PGA_scaffold_79__1_contigs__length_9329999 unplaced-scaffold na na JADDTQ010000090.1 <> na Primary Assembly 9317063 na PGA_scaffold_80__1_contigs__length_33032092 unplaced-scaffold na na JADDTQ010000091.1 <> na Primary Assembly 33023782 na PGA_scaffold_81__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000092.1 <> na Primary Assembly 49999 na PGA_scaffold_8__1_contigs__length_1375838 unplaced-scaffold na na JADDTQ010000093.1 <> na Primary Assembly 1375839 na PGA_scaffold_82__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000094.1 <> na Primary Assembly 49364 na PGA_scaffold_84__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000095.1 <> na Primary Assembly 44221 na PGA_scaffold_85__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000096.1 <> na Primary Assembly 47144 na PGA_scaffold_86__1_contigs__length_124999 unplaced-scaffold na na JADDTQ010000097.1 <> na Primary Assembly 121312 na PGA_scaffold_87__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000098.1 <> na Primary Assembly 18519 na PGA_scaffold_88__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000099.1 <> na Primary Assembly 18530 na PGA_scaffold_89__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000100.1 <> na Primary Assembly 24999 na PGA_scaffold_91__1_contigs__length_124999 unplaced-scaffold na na JADDTQ010000101.1 <> na Primary Assembly 123763 na PGA_scaffold_9__1_contigs__length_824893 unplaced-scaffold na na JADDTQ010000102.1 <> na Primary Assembly 824894 na PGA_scaffold_92__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000103.1 <> na Primary Assembly 48370 na PGA_scaffold_93__1_contigs__length_49999 unplaced-scaffold na na JADDTQ010000104.1 <> na Primary Assembly 45994 na PGA_scaffold_95__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000105.1 <> na Primary Assembly 24999 na PGA_scaffold_96__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000106.1 <> na Primary Assembly 24999 na PGA_scaffold_97__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000107.1 <> na Primary Assembly 24207 na PGA_scaffold_99__1_contigs__length_24999 unplaced-scaffold na na JADDTQ010000108.1 <> na Primary Assembly 24999 na