# Assembly name: fAplTae1.pri # Organism name: Aplochiton taeniatus (bony fishes) # Isolate: fAplTae1 # Taxid: 946358 # BioSample: SAMN12623621 # BioProject: PRJNA561971 # Submitter: Vertebrate Genomes Project # Date: 2021-03-30 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAGFOV01 # Assembly method: FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Assembly Polish v. SMRTLink7.0.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2021-03-04; VGP assembly pipeline v. 1.6 # Expected final version: no # Genome coverage: 60.0x # Sequencing technology: PacBio Sequel CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Representative Genome # GenBank assembly accession: GCA_017639675.1 # Linked assembly: GCA_017639685.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_017639725.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM030172.1 <> na Primary Assembly 55692580 na SUPER_2 assembled-molecule 2 Chromosome CM030173.1 <> na Primary Assembly 45010363 na SUPER_3 assembled-molecule 3 Chromosome CM030174.1 <> na Primary Assembly 35808887 na SUPER_4 assembled-molecule 4 Chromosome CM030175.1 <> na Primary Assembly 22949196 na SUPER_5 assembled-molecule 5 Chromosome CM030176.1 <> na Primary Assembly 21987907 na SUPER_6 assembled-molecule 6 Chromosome CM030177.1 <> na Primary Assembly 21736665 na SUPER_7 assembled-molecule 7 Chromosome CM030178.1 <> na Primary Assembly 20449502 na SUPER_8 assembled-molecule 8 Chromosome CM030179.1 <> na Primary Assembly 20392628 na SUPER_9 assembled-molecule 9 Chromosome CM030180.1 <> na Primary Assembly 20388921 na SUPER_10 assembled-molecule 10 Chromosome CM030181.1 <> na Primary Assembly 20030108 na SUPER_11 assembled-molecule 11 Chromosome CM030182.1 <> na Primary Assembly 19786543 na SUPER_12 assembled-molecule 12 Chromosome CM030183.1 <> na Primary Assembly 19646570 na SUPER_13 assembled-molecule 13 Chromosome CM030184.1 <> na Primary Assembly 18930316 na SUPER_14 assembled-molecule 14 Chromosome CM030185.1 <> na Primary Assembly 18783843 na SUPER_15 assembled-molecule 15 Chromosome CM030186.1 <> na Primary Assembly 18481063 na SUPER_16 assembled-molecule 16 Chromosome CM030187.1 <> na Primary Assembly 17792633 na SUPER_17 assembled-molecule 17 Chromosome CM030188.1 <> na Primary Assembly 16492511 na SUPER_18 assembled-molecule 18 Chromosome CM030189.1 <> na Primary Assembly 16520380 na SUPER_19 assembled-molecule 19 Chromosome CM030190.1 <> na Primary Assembly 14915519 na SUPER_20 assembled-molecule 20 Chromosome CM030191.1 <> na Primary Assembly 14206412 na SUPER_4_unloc_1 unlocalized-scaffold 4 Chromosome JAGFOV010000031.1 <> na Primary Assembly 133191 na SUPER_17_unloc_1 unlocalized-scaffold 17 Chromosome JAGFOV010000015.1 <> na Primary Assembly 354689 na SUPER_17_unloc_7 unlocalized-scaffold 17 Chromosome JAGFOV010000016.1 <> na Primary Assembly 27522 na SUPER_17_unloc_3 unlocalized-scaffold 17 Chromosome JAGFOV010000017.1 <> na Primary Assembly 55969 na SUPER_17_unloc_4 unlocalized-scaffold 17 Chromosome JAGFOV010000018.1 <> na Primary Assembly 53066 na SUPER_17_unloc_5 unlocalized-scaffold 17 Chromosome JAGFOV010000019.1 <> na Primary Assembly 37632 na SUPER_17_unloc_9 unlocalized-scaffold 17 Chromosome JAGFOV010000020.1 <> na Primary Assembly 25455 na SUPER_17_unloc_6 unlocalized-scaffold 17 Chromosome JAGFOV010000021.1 <> na Primary Assembly 33036 na SUPER_17_unloc_8 unlocalized-scaffold 17 Chromosome JAGFOV010000022.1 <> na Primary Assembly 26920 na SUPER_17_unloc_2 unlocalized-scaffold 17 Chromosome JAGFOV010000023.1 <> na Primary Assembly 128507 na SUPER_20_unloc_1 unlocalized-scaffold 20 Chromosome JAGFOV010000030.1 <> na Primary Assembly 44862 na scaffold_168_ctg1 unplaced-scaffold na na JAGFOV010000038.1 <> na Primary Assembly 39278 na scaffold_190_ctg1 unplaced-scaffold na na JAGFOV010000039.1 <> na Primary Assembly 32834 na scaffold_286_ctg1 unplaced-scaffold na na JAGFOV010000040.1 <> na Primary Assembly 15603 na scaffold_295_ctg1 unplaced-scaffold na na JAGFOV010000041.1 <> na Primary Assembly 11237 na scaffold_38_ctg1 unplaced-scaffold na na JAGFOV010000032.1 <> na Primary Assembly 233064 na scaffold_39_ctg1 unplaced-scaffold na na JAGFOV010000033.1 <> na Primary Assembly 219404 na scaffold_40_ctg1 unplaced-scaffold na na JAGFOV010000034.1 <> na Primary Assembly 208571 na scaffold_55_ctg1 unplaced-scaffold na na JAGFOV010000035.1 <> na Primary Assembly 106403 na scaffold_67_ctg1 unplaced-scaffold na na JAGFOV010000036.1 <> na Primary Assembly 78804 na scaffold_71_ctg1 unplaced-scaffold na na JAGFOV010000037.1 <> na Primary Assembly 77553 na