# Assembly name: ASM1815310v1 # Organism name: Drosophila rufa (flies) # Isolate: EH091 iso-C L_3 # Sex: female # Taxid: 67533 # BioSample: SAMN16729620 # BioProject: PRJNA675888 # Submitter: Stanford University # Date: 2021-04-28 # Assembly type: haploid # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JAECXS01 # Assembly method: Flye v. 2.6; Racon v. 1.4.12; Medaka v. 0.9.1; Pilon v. 1.23 # Expected final version: no # Genome coverage: 124.8x # Sequencing technology: Oxford Nanopore MinION; Illumina NextSeq # GenBank assembly accession: GCA_018153105.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_018153135.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name contig_1 unplaced-scaffold na na JAECXS010000001.1 <> na Primary Assembly 32600505 na contig_2 unplaced-scaffold na na JAECXS010000002.1 <> na Primary Assembly 30454752 na contig_3 unplaced-scaffold na na JAECXS010000003.1 <> na Primary Assembly 4217779 na contig_4 unplaced-scaffold na na JAECXS010000004.1 <> na Primary Assembly 55311 na contig_5 unplaced-scaffold na na JAECXS010000005.1 <> na Primary Assembly 54761 na contig_6 unplaced-scaffold na na JAECXS010000006.1 <> na Primary Assembly 54033 na contig_7 unplaced-scaffold na na JAECXS010000007.1 <> na Primary Assembly 52424 na contig_8 unplaced-scaffold na na JAECXS010000008.1 <> na Primary Assembly 52743 na contig_9 unplaced-scaffold na na JAECXS010000009.1 <> na Primary Assembly 41769 na contig_10 unplaced-scaffold na na JAECXS010000010.1 <> na Primary Assembly 5600 na contig_11 unplaced-scaffold na na JAECXS010000011.1 <> na Primary Assembly 31422 na contig_12 unplaced-scaffold na na JAECXS010000012.1 <> na Primary Assembly 39889 na contig_13 unplaced-scaffold na na JAECXS010000013.1 <> na Primary Assembly 37323 na contig_14 unplaced-scaffold na na JAECXS010000014.1 <> na Primary Assembly 39409 na contig_15 unplaced-scaffold na na JAECXS010000015.1 <> na Primary Assembly 3387698 na contig_16 unplaced-scaffold na na JAECXS010000016.1 <> na Primary Assembly 37715 na contig_17 unplaced-scaffold na na JAECXS010000017.1 <> na Primary Assembly 34678 na contig_18 unplaced-scaffold na na JAECXS010000018.1 <> na Primary Assembly 34807 na contig_19 unplaced-scaffold na na JAECXS010000019.1 <> na Primary Assembly 34614 na contig_20 unplaced-scaffold na na JAECXS010000020.1 <> na Primary Assembly 31261 na contig_21 unplaced-scaffold na na JAECXS010000021.1 <> na Primary Assembly 24583 na contig_22 unplaced-scaffold na na JAECXS010000022.1 <> na Primary Assembly 24985 na contig_23 unplaced-scaffold na na JAECXS010000023.1 <> na Primary Assembly 1711 na contig_24 unplaced-scaffold na na JAECXS010000024.1 <> na Primary Assembly 13307 na contig_25 unplaced-scaffold na na JAECXS010000025.1 <> na Primary Assembly 24379 na contig_26 unplaced-scaffold na na JAECXS010000026.1 <> na Primary Assembly 24401 na contig_27 unplaced-scaffold na na JAECXS010000027.1 <> na Primary Assembly 21725 na contig_28 unplaced-scaffold na na JAECXS010000028.1 <> na Primary Assembly 20568 na contig_29 unplaced-scaffold na na JAECXS010000029.1 <> na Primary Assembly 17274 na contig_30 unplaced-scaffold na na JAECXS010000030.1 <> na Primary Assembly 9495 na contig_31 unplaced-scaffold na na JAECXS010000031.1 <> na Primary Assembly 15767 na contig_32 unplaced-scaffold na na JAECXS010000032.1 <> na Primary Assembly 15347 na contig_33 unplaced-scaffold na na JAECXS010000033.1 <> na Primary Assembly 14654 na contig_34 unplaced-scaffold na na JAECXS010000034.1 <> na Primary Assembly 9821 na contig_35 unplaced-scaffold na na JAECXS010000035.1 <> na Primary Assembly 2075 na contig_36 unplaced-scaffold na na JAECXS010000036.1 <> na Primary Assembly 13618 na contig_37 unplaced-scaffold na na JAECXS010000037.1 <> na Primary Assembly 14421 na contig_38 unplaced-scaffold na na JAECXS010000038.1 <> na Primary Assembly 1564202 na contig_39 unplaced-scaffold na na JAECXS010000039.1 <> na Primary Assembly 8695 na contig_40 unplaced-scaffold na na JAECXS010000040.1 <> na Primary Assembly 11604 na contig_41 unplaced-scaffold na na JAECXS010000041.1 <> na Primary Assembly 13297 na contig_42 unplaced-scaffold na na JAECXS010000042.1 <> na Primary Assembly 12662 na contig_43 unplaced-scaffold na na JAECXS010000043.1 <> na Primary Assembly 10993 na contig_44 unplaced-scaffold na na JAECXS010000044.1 <> na Primary Assembly 10744 na contig_45 unplaced-scaffold na na JAECXS010000045.1 <> na Primary Assembly 9840 na contig_46 unplaced-scaffold na na JAECXS010000046.1 <> na Primary Assembly 9100 na contig_47 unplaced-scaffold na na JAECXS010000047.1 <> na Primary Assembly 8660 na contig_48 unplaced-scaffold na na JAECXS010000048.1 <> na Primary Assembly 8647 na contig_49 unplaced-scaffold na na JAECXS010000049.1 <> na Primary Assembly 7188 na contig_50 unplaced-scaffold na na JAECXS010000050.1 <> na Primary Assembly 1952 na contig_51 unplaced-scaffold na na JAECXS010000051.1 <> na Primary Assembly 3373 na contig_52 unplaced-scaffold na na JAECXS010000052.1 <> na Primary Assembly 2486 na contig_53 unplaced-scaffold na na JAECXS010000053.1 <> na Primary Assembly 1547264 na contig_54 unplaced-scaffold na na JAECXS010000054.1 <> na Primary Assembly 26551 na contig_55 unplaced-scaffold na na JAECXS010000055.1 <> na Primary Assembly 2831 na contig_56 unplaced-scaffold na na JAECXS010000056.1 <> na Primary Assembly 3644 na contig_57 unplaced-scaffold na na JAECXS010000057.1 <> na Primary Assembly 7499 na contig_58 unplaced-scaffold na na JAECXS010000058.1 <> na Primary Assembly 7036 na contig_59 unplaced-scaffold na na JAECXS010000059.1 <> na Primary Assembly 6034 na contig_60 unplaced-scaffold na na JAECXS010000060.1 <> na Primary Assembly 6773 na contig_61 unplaced-scaffold na na JAECXS010000061.1 <> na Primary Assembly 6528 na contig_62 unplaced-scaffold na na JAECXS010000062.1 <> na Primary Assembly 5674 na contig_63 unplaced-scaffold na na JAECXS010000063.1 <> na Primary Assembly 5075 na contig_64 unplaced-scaffold na na JAECXS010000064.1 <> na Primary Assembly 4856 na contig_65 unplaced-scaffold na na JAECXS010000065.1 <> na Primary Assembly 3651 na contig_66 unplaced-scaffold na na JAECXS010000066.1 <> na Primary Assembly 4776 na contig_67 unplaced-scaffold na na JAECXS010000067.1 <> na Primary Assembly 4714 na contig_68 unplaced-scaffold na na JAECXS010000068.1 <> na Primary Assembly 3966 na contig_69 unplaced-scaffold na na JAECXS010000069.1 <> na Primary Assembly 3251 na contig_70 unplaced-scaffold na na JAECXS010000070.1 <> na Primary Assembly 2986 na contig_71 unplaced-scaffold na na JAECXS010000071.1 <> na Primary Assembly 4119 na contig_72 unplaced-scaffold na na JAECXS010000072.1 <> na Primary Assembly 1097489 na contig_74 unplaced-scaffold na na JAECXS010000073.1 <> na Primary Assembly 2444 na contig_75 unplaced-scaffold na na JAECXS010000074.1 <> na Primary Assembly 3245 na contig_76 unplaced-scaffold na na JAECXS010000075.1 <> na Primary Assembly 3589 na contig_77 unplaced-scaffold na na JAECXS010000076.1 <> na Primary Assembly 3172 na contig_78 unplaced-scaffold na na JAECXS010000077.1 <> na Primary Assembly 178119 na contig_79 unplaced-scaffold na na JAECXS010000078.1 <> na Primary Assembly 7990 na contig_80 unplaced-scaffold na na JAECXS010000079.1 <> na Primary Assembly 1604 na contig_81 unplaced-scaffold na na JAECXS010000080.1 <> na Primary Assembly 1076 na contig_82 unplaced-scaffold na na JAECXS010000081.1 <> na Primary Assembly 2664 na contig_83 unplaced-scaffold na na JAECXS010000082.1 <> na Primary Assembly 569829 na contig_84 unplaced-scaffold na na JAECXS010000083.1 <> na Primary Assembly 700692 na contig_85 unplaced-scaffold na na JAECXS010000084.1 <> na Primary Assembly 1084849 na contig_86 unplaced-scaffold na na JAECXS010000085.1 <> na Primary Assembly 29797144 na contig_87 unplaced-scaffold na na JAECXS010000086.1 <> na Primary Assembly 575509 na contig_88 unplaced-scaffold na na JAECXS010000087.1 <> na Primary Assembly 523488 na contig_89 unplaced-scaffold na na JAECXS010000088.1 <> na Primary Assembly 322297 na contig_90 unplaced-scaffold na na JAECXS010000089.1 <> na Primary Assembly 183185 na contig_91 unplaced-scaffold na na JAECXS010000090.1 <> na Primary Assembly 497869 na contig_92 unplaced-scaffold na na JAECXS010000091.1 <> na Primary Assembly 465852 na contig_93 unplaced-scaffold na na JAECXS010000092.1 <> na Primary Assembly 416504 na contig_94 unplaced-scaffold na na JAECXS010000093.1 <> na Primary Assembly 415318 na contig_95 unplaced-scaffold na na JAECXS010000094.1 <> na Primary Assembly 412676 na contig_96 unplaced-scaffold na na JAECXS010000095.1 <> na Primary Assembly 408277 na contig_97 unplaced-scaffold na na JAECXS010000096.1 <> na Primary Assembly 24719385 na contig_98 unplaced-scaffold na na JAECXS010000097.1 <> na Primary Assembly 404105 na contig_99 unplaced-scaffold na na JAECXS010000098.1 <> na Primary Assembly 10485 na contig_100 unplaced-scaffold na na JAECXS010000099.1 <> na Primary Assembly 12037 na contig_101 unplaced-scaffold na na JAECXS010000100.1 <> na Primary Assembly 364942 na contig_102 unplaced-scaffold na na JAECXS010000101.1 <> na Primary Assembly 100397 na contig_103 unplaced-scaffold na na JAECXS010000102.1 <> na Primary Assembly 259474 na contig_104 unplaced-scaffold na na JAECXS010000103.1 <> na Primary Assembly 371597 na contig_105 unplaced-scaffold na na JAECXS010000104.1 <> na Primary Assembly 354019 na contig_106 unplaced-scaffold na na JAECXS010000105.1 <> na Primary Assembly 354469 na contig_107 unplaced-scaffold na na JAECXS010000106.1 <> na Primary Assembly 6369 na contig_108 unplaced-scaffold na na JAECXS010000107.1 <> na Primary Assembly 318374 na contig_109 unplaced-scaffold na na JAECXS010000108.1 <> na Primary Assembly 340886 na contig_110 unplaced-scaffold na na JAECXS010000109.1 <> na Primary Assembly 295546 na contig_111 unplaced-scaffold na na JAECXS010000110.1 <> na Primary Assembly 324253 na contig_112 unplaced-scaffold na na JAECXS010000111.1 <> na Primary Assembly 16815223 na contig_113 unplaced-scaffold na na JAECXS010000112.1 <> na Primary Assembly 288688 na contig_114 unplaced-scaffold na na JAECXS010000113.1 <> na Primary Assembly 316403 na contig_115 unplaced-scaffold na na JAECXS010000114.1 <> na Primary Assembly 315025 na contig_116 unplaced-scaffold na na JAECXS010000115.1 <> na Primary Assembly 193201 na contig_117 unplaced-scaffold na na JAECXS010000116.1 <> na Primary Assembly 106071 na contig_118 unplaced-scaffold na na JAECXS010000117.1 <> na Primary Assembly 285097 na contig_119 unplaced-scaffold na na JAECXS010000118.1 <> na Primary Assembly 279845 na contig_120 unplaced-scaffold na na JAECXS010000119.1 <> na Primary Assembly 267971 na contig_121 unplaced-scaffold na na JAECXS010000120.1 <> na Primary Assembly 225626 na contig_122 unplaced-scaffold na na JAECXS010000121.1 <> na Primary Assembly 247591 na contig_123 unplaced-scaffold na na JAECXS010000122.1 <> na Primary Assembly 246713 na contig_124 unplaced-scaffold na na JAECXS010000123.1 <> na Primary Assembly 16439483 na contig_125 unplaced-scaffold na na JAECXS010000124.1 <> na Primary Assembly 242293 na contig_126 unplaced-scaffold na na JAECXS010000125.1 <> na Primary Assembly 238795 na contig_127 unplaced-scaffold na na JAECXS010000126.1 <> na Primary Assembly 238490 na contig_128 unplaced-scaffold na na JAECXS010000127.1 <> na Primary Assembly 130071 na contig_129 unplaced-scaffold na na JAECXS010000128.1 <> na Primary Assembly 98417 na contig_130 unplaced-scaffold na na JAECXS010000129.1 <> na Primary Assembly 231214 na contig_131 unplaced-scaffold na na JAECXS010000130.1 <> na Primary Assembly 213547 na contig_132 unplaced-scaffold na na JAECXS010000131.1 <> na Primary Assembly 207813 na contig_133 unplaced-scaffold na na JAECXS010000132.1 <> na Primary Assembly 199020 na contig_134 unplaced-scaffold na na JAECXS010000133.1 <> na Primary Assembly 195035 na contig_135 unplaced-scaffold na na JAECXS010000134.1 <> na Primary Assembly 191650 na contig_136 unplaced-scaffold na na JAECXS010000135.1 <> na Primary Assembly 7627288 na contig_137 unplaced-scaffold na na JAECXS010000136.1 <> na Primary Assembly 174393 na contig_138 unplaced-scaffold na na JAECXS010000137.1 <> na Primary Assembly 165405 na contig_139 unplaced-scaffold na na JAECXS010000138.1 <> na Primary Assembly 156948 na contig_140 unplaced-scaffold na na JAECXS010000139.1 <> na Primary Assembly 158827 na contig_141 unplaced-scaffold na na JAECXS010000140.1 <> na Primary Assembly 156142 na contig_142 unplaced-scaffold na na JAECXS010000141.1 <> na Primary Assembly 154430 na contig_143 unplaced-scaffold na na JAECXS010000142.1 <> na Primary Assembly 151052 na contig_144 unplaced-scaffold na na JAECXS010000143.1 <> na Primary Assembly 156112 na contig_145 unplaced-scaffold na na JAECXS010000144.1 <> na Primary Assembly 139723 na contig_146 unplaced-scaffold na na JAECXS010000145.1 <> na Primary Assembly 10795 na contig_147 unplaced-scaffold na na JAECXS010000146.1 <> na Primary Assembly 294 na contig_148 unplaced-scaffold na na JAECXS010000147.1 <> na Primary Assembly 5362 na contig_149 unplaced-scaffold na na JAECXS010000148.1 <> na Primary Assembly 114967 na contig_150 unplaced-scaffold na na JAECXS010000149.1 <> na Primary Assembly 7465279 na contig_151 unplaced-scaffold na na JAECXS010000150.1 <> na Primary Assembly 125012 na contig_152 unplaced-scaffold na na JAECXS010000151.1 <> na Primary Assembly 128000 na contig_153 unplaced-scaffold na na JAECXS010000152.1 <> na Primary Assembly 127140 na contig_154 unplaced-scaffold na na JAECXS010000153.1 <> na Primary Assembly 55780 na contig_155 unplaced-scaffold na na JAECXS010000154.1 <> na Primary Assembly 8744 na contig_156 unplaced-scaffold na na JAECXS010000155.1 <> na Primary Assembly 45005 na contig_157 unplaced-scaffold na na JAECXS010000156.1 <> na Primary Assembly 114289 na contig_158 unplaced-scaffold na na JAECXS010000157.1 <> na Primary Assembly 111003 na contig_159 unplaced-scaffold na na JAECXS010000158.1 <> na Primary Assembly 110532 na contig_160 unplaced-scaffold na na JAECXS010000159.1 <> na Primary Assembly 108862 na contig_161 unplaced-scaffold na na JAECXS010000160.1 <> na Primary Assembly 105269 na contig_162 unplaced-scaffold na na JAECXS010000161.1 <> na Primary Assembly 97353 na contig_163 unplaced-scaffold na na JAECXS010000162.1 <> na Primary Assembly 5865597 na contig_164 unplaced-scaffold na na JAECXS010000163.1 <> na Primary Assembly 95138 na contig_165 unplaced-scaffold na na JAECXS010000164.1 <> na Primary Assembly 92679 na contig_166 unplaced-scaffold na na JAECXS010000165.1 <> na Primary Assembly 93928 na contig_167 unplaced-scaffold na na JAECXS010000166.1 <> na Primary Assembly 90171 na contig_168 unplaced-scaffold na na JAECXS010000167.1 <> na Primary Assembly 89082 na contig_169 unplaced-scaffold na na JAECXS010000168.1 <> na Primary Assembly 86090 na contig_170 unplaced-scaffold na na JAECXS010000169.1 <> na Primary Assembly 80491 na contig_171 unplaced-scaffold na na JAECXS010000170.1 <> na Primary Assembly 82508 na contig_172 unplaced-scaffold na na JAECXS010000171.1 <> na Primary Assembly 80622 na contig_173 unplaced-scaffold na na JAECXS010000172.1 <> na Primary Assembly 80131 na contig_174 unplaced-scaffold na na JAECXS010000173.1 <> na Primary Assembly 4272957 na contig_175 unplaced-scaffold na na JAECXS010000174.1 <> na Primary Assembly 7101 na contig_176 unplaced-scaffold na na JAECXS010000175.1 <> na Primary Assembly 55129 na contig_177 unplaced-scaffold na na JAECXS010000176.1 <> na Primary Assembly 73695 na contig_178 unplaced-scaffold na na JAECXS010000177.1 <> na Primary Assembly 67318 na contig_179 unplaced-scaffold na na JAECXS010000178.1 <> na Primary Assembly 12853 na contig_180 unplaced-scaffold na na JAECXS010000179.1 <> na Primary Assembly 43871 na contig_181 unplaced-scaffold na na JAECXS010000180.1 <> na Primary Assembly 1779 na contig_182 unplaced-scaffold na na JAECXS010000181.1 <> na Primary Assembly 65222 na contig_183 unplaced-scaffold na na JAECXS010000182.1 <> na Primary Assembly 64013 na contig_184 unplaced-scaffold na na JAECXS010000183.1 <> na Primary Assembly 63220 na contig_185 unplaced-scaffold na na JAECXS010000184.1 <> na Primary Assembly 57543 na contig_186 unplaced-scaffold na na JAECXS010000185.1 <> na Primary Assembly 57326 na contig_187 unplaced-scaffold na na JAECXS010000186.1 <> na Primary Assembly 55305 na