# Assembly name: fScaArg1.pri # Organism name: Scatophagus argus (ray-finned fishes) # Isolate: fScaArg1 # Taxid: 75038 # BioSample: SAMN12623616 # BioProject: PRJNA749579 # Submitter: G10K # Date: 2021-10-13 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAIZDN01 # Assembly method: falcon-kit v. 1.3.0; FALCON-Unzip v. 1.2.0; purge_dups v. 1.2.3; scaff10X v. 4.2; bionano Solve v. Solve3.5_12162019; Salsa2 HiC v. 2.2; Longranger Align v. 2.2.2; pbmm2 v. 1.4.0; gcpp v. 1.0.0-1807624; bcftools v. 1.12-21-ga865a16; merfin v. 09c026d; deepvariant v. 1.1.0; gEVAL manual curation v. 2021-07-16 # Expected final version: no # Genome coverage: 92.59x # Sequencing technology: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Reference Genome # GenBank assembly accession: GCA_020382885.1 # Linked assembly: GCA_020382915.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_020382895.1 Primary Assembly ## GCA_020382905.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM035567.1 <> na Primary Assembly 29849514 na SUPER_2 assembled-molecule 2 Chromosome CM035568.1 <> na Primary Assembly 28760583 na SUPER_3 assembled-molecule 3 Chromosome CM035569.1 <> na Primary Assembly 28103411 na SUPER_4 assembled-molecule 4 Chromosome CM035570.1 <> na Primary Assembly 27676392 na SUPER_5 assembled-molecule 5 Chromosome CM035571.1 <> na Primary Assembly 27512945 na SUPER_6 assembled-molecule 6 Chromosome CM035572.1 <> na Primary Assembly 26954070 na SUPER_7 assembled-molecule 7 Chromosome CM035573.1 <> na Primary Assembly 26937617 na SUPER_8 assembled-molecule 8 Chromosome CM035574.1 <> na Primary Assembly 26504894 na SUPER_9 assembled-molecule 9 Chromosome CM035575.1 <> na Primary Assembly 26399534 na SUPER_10 assembled-molecule 10 Chromosome CM035576.1 <> na Primary Assembly 24454377 na SUPER_11 assembled-molecule 11 Chromosome CM035577.1 <> na Primary Assembly 24451451 na SUPER_12 assembled-molecule 12 Chromosome CM035578.1 <> na Primary Assembly 24276148 na SUPER_13 assembled-molecule 13 Chromosome CM035579.1 <> na Primary Assembly 23939444 na SUPER_14 assembled-molecule 14 Chromosome CM035580.1 <> na Primary Assembly 23309014 na SUPER_15 assembled-molecule 15 Chromosome CM035581.1 <> na Primary Assembly 23087988 na SUPER_16 assembled-molecule 16 Chromosome CM035582.1 <> na Primary Assembly 22969701 na SUPER_17 assembled-molecule 17 Chromosome CM035583.1 <> na Primary Assembly 22336186 na SUPER_18 assembled-molecule 18 Chromosome CM035584.1 <> na Primary Assembly 21991586 na SUPER_19 assembled-molecule 19 Chromosome CM035585.1 <> na Primary Assembly 21463409 na SUPER_20 assembled-molecule 20 Chromosome CM035586.1 <> na Primary Assembly 20639709 na SUPER_21 assembled-molecule 21 Chromosome CM035587.1 <> na Primary Assembly 20048999 na SUPER_22 assembled-molecule 22 Chromosome CM035588.1 <> na Primary Assembly 18375855 na SUPER_23 assembled-molecule 23 Chromosome CM035589.1 <> na Primary Assembly 16169545 na SUPER_24 assembled-molecule 24 Chromosome CM035590.1 <> na Primary Assembly 13207098 na scaffold_28_ctg1 unplaced-scaffold na na JAIZDN010000025.1 <> na Primary Assembly 230558 na scaffold_29_ctg1 unplaced-scaffold na na JAIZDN010000026.1 <> na Primary Assembly 146890 na scaffold_30_ctg1 unplaced-scaffold na na JAIZDN010000027.1 <> na Primary Assembly 112093 na scaffold_31_ctg1 unplaced-scaffold na na JAIZDN010000028.1 <> na Primary Assembly 112872 na scaffold_34_ctg1 unplaced-scaffold na na JAIZDN010000029.1 <> na Primary Assembly 68619 na scaffold_35_ctg1 unplaced-scaffold na na JAIZDN010000030.1 <> na Primary Assembly 65921 na scaffold_36_ctg1 unplaced-scaffold na na JAIZDN010000031.1 <> na Primary Assembly 60806 na scaffold_37_ctg1 unplaced-scaffold na na JAIZDN010000032.1 <> na Primary Assembly 57835 na scaffold_40_ctg1 unplaced-scaffold na na JAIZDN010000033.1 <> na Primary Assembly 53294 na scaffold_41_ctg1 unplaced-scaffold na na JAIZDN010000034.1 <> na Primary Assembly 52876 na scaffold_43_ctg1 unplaced-scaffold na na JAIZDN010000035.1 <> na Primary Assembly 41841 na scaffold_44_ctg1 unplaced-scaffold na na JAIZDN010000036.1 <> na Primary Assembly 40818 na scaffold_47_ctg1 unplaced-scaffold na na JAIZDN010000037.1 <> na Primary Assembly 37523 na scaffold_49_ctg1 unplaced-scaffold na na JAIZDN010000038.1 <> na Primary Assembly 33462 na scaffold_50_ctg1 unplaced-scaffold na na JAIZDN010000039.1 <> na Primary Assembly 32509 na scaffold_51_ctg1 unplaced-scaffold na na JAIZDN010000040.1 <> na Primary Assembly 32345 na scaffold_53_ctg1 unplaced-scaffold na na JAIZDN010000041.1 <> na Primary Assembly 30041 na scaffold_54_ctg1 unplaced-scaffold na na JAIZDN010000042.1 <> na Primary Assembly 29691 na scaffold_55_ctg1 unplaced-scaffold na na JAIZDN010000043.1 <> na Primary Assembly 29559 na scaffold_57_ctg1 unplaced-scaffold na na JAIZDN010000044.1 <> na Primary Assembly 25251 na scaffold_59_ctg1 unplaced-scaffold na na JAIZDN010000045.1 <> na Primary Assembly 23512 na scaffold_60_ctg1 unplaced-scaffold na na JAIZDN010000046.1 <> na Primary Assembly 22025 na scaffold_56_ctg1 unplaced-scaffold na na JAIZDN010000047.1 <> na Primary Assembly 25690 na fScaArg1_MT assembled-molecule MT Mitochondrion CM035598.1 <> na non-nuclear 16771 na