# Assembly name: bApuApu2.pri.cur # Organism name: Apus apus (common swift) # Isolate: bApuApu2 # Sex: female # Taxid: 8895 # BioSample: SAMN22785356 # BioProject: PRJNA776336 # Submitter: Vertebrate Genomes Project # Date: 2021-11-04 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAJGQY01 # Assembly method: FALCON-kit v. 1.8.1; FALCON-Unzip v. 1.3.7; purge-dups v. 0.0.3; Longranger v. 2.2.2; scaff10X v. 4.2; Bionano solve v. 3.5.1; Salsa2 v. 2.2.0; dentist v. 1.0.0; Freebays v. 1.3.2; gEVAL manual curation v. 2021-06-17 # Expected final version: no # Genome coverage: 103.36x # Sequencing technology: PacBio Sequel I CLR; Bionano Genomics DLS; Arima Genomics Hi-C; 10X Genomics linked reads # RefSeq category: Representative Genome # GenBank assembly accession: GCA_020740795.1 # RefSeq assembly accession: GCF_020740795.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_020740585.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_020740805.1 GCF_020740805.1 Primary Assembly ## GCF_025885975.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM036503.1 = NC_067282.1 Primary Assembly 206448969 na SUPER_2 assembled-molecule 2 Chromosome CM036504.1 = NC_067283.1 Primary Assembly 157038886 na SUPER_3 assembled-molecule 3 Chromosome CM036505.1 = NC_067284.1 Primary Assembly 118118700 na SUPER_4 assembled-molecule 4 Chromosome CM036506.1 = NC_067285.1 Primary Assembly 115508478 na SUPER_5 assembled-molecule 5 Chromosome CM036507.1 = NC_067286.1 Primary Assembly 66458660 na SUPER_6 assembled-molecule 6 Chromosome CM036508.1 = NC_067287.1 Primary Assembly 39957907 na SUPER_7 assembled-molecule 7 Chromosome CM036509.1 = NC_067288.1 Primary Assembly 31910893 na SUPER_8 assembled-molecule 8 Chromosome CM036510.1 = NC_067289.1 Primary Assembly 26880876 na SUPER_9 assembled-molecule 9 Chromosome CM036511.1 = NC_067290.1 Primary Assembly 21930077 na SUPER_10 assembled-molecule 10 Chromosome CM036512.1 = NC_067291.1 Primary Assembly 21766669 na SUPER_11 assembled-molecule 11 Chromosome CM036513.1 = NC_067292.1 Primary Assembly 21046901 na SUPER_12 assembled-molecule 12 Chromosome CM036514.1 = NC_067293.1 Primary Assembly 20758364 na SUPER_13 assembled-molecule 13 Chromosome CM036515.1 = NC_067294.1 Primary Assembly 19374202 na SUPER_14 assembled-molecule 14 Chromosome CM036516.1 = NC_067295.1 Primary Assembly 17217432 na SUPER_15 assembled-molecule 15 Chromosome CM036517.1 = NC_067296.1 Primary Assembly 15759960 na SUPER_16 assembled-molecule 16 Chromosome CM036518.1 = NC_067297.1 Primary Assembly 14928149 na SUPER_17 assembled-molecule 17 Chromosome CM036519.1 = NC_067298.1 Primary Assembly 12704414 na SUPER_18 assembled-molecule 18 Chromosome CM036520.1 = NC_067299.1 Primary Assembly 12129945 na SUPER_19 assembled-molecule 19 Chromosome CM036521.1 = NC_067300.1 Primary Assembly 11935563 na SUPER_20 assembled-molecule 20 Chromosome CM036522.1 = NC_067301.1 Primary Assembly 8468147 na SUPER_21 assembled-molecule 21 Chromosome CM036523.1 = NC_067302.1 Primary Assembly 7619906 na SUPER_22 assembled-molecule 22 Chromosome CM036524.1 = NC_067303.1 Primary Assembly 7358787 na SUPER_23 assembled-molecule 23 Chromosome CM036525.1 = NC_067304.1 Primary Assembly 6883041 na SUPER_24 assembled-molecule 24 Chromosome CM036526.1 = NC_067305.1 Primary Assembly 6553870 na SUPER_25 assembled-molecule 25 Chromosome CM036527.1 = NC_067306.1 Primary Assembly 6312354 na SUPER_26 assembled-molecule 26 Chromosome CM036528.1 = NC_067307.1 Primary Assembly 5517096 na SUPER_27 assembled-molecule 27 Chromosome CM036529.1 = NC_067308.1 Primary Assembly 2352098 na SUPER_28 assembled-molecule 28 Chromosome CM036530.1 = NC_067309.1 Primary Assembly 1591093 na SUPER_29 assembled-molecule 29 Chromosome CM036531.1 = NC_067310.1 Primary Assembly 688416 na SUPER_W assembled-molecule W Chromosome CM036532.1 = NC_067311.1 Primary Assembly 10967425 na SUPER_Z assembled-molecule Z Chromosome CM036533.1 = NC_067312.1 Primary Assembly 77839815 na SUPER_1_unloc_1 unlocalized-scaffold 1 Chromosome JAJGQY010000001.1 = NW_026248820.1 Primary Assembly 67137 na SUPER_28_unloc_2 unlocalized-scaffold 28 Chromosome JAJGQY010000032.1 = NW_026248822.1 Primary Assembly 43631 na SUPER_28_unloc_1 unlocalized-scaffold 28 Chromosome JAJGQY010000034.1 = NW_026248821.1 Primary Assembly 147695 na SUPER_W_unloc_1 unlocalized-scaffold W Chromosome JAJGQY010000007.1 = NW_026248896.1 Primary Assembly 562355 na SUPER_W_unloc_2 unlocalized-scaffold W Chromosome JAJGQY010000008.1 = NW_026248897.1 Primary Assembly 79016 na manual_scaffold_100_ctg1 unplaced-scaffold na na JAJGQY010000037.1 = NW_026248823.1 Primary Assembly 29561 na manual_scaffold_101_ctg1 unplaced-scaffold na na JAJGQY010000038.1 = NW_026248824.1 Primary Assembly 29487 na manual_scaffold_102_ctg1 unplaced-scaffold na na JAJGQY010000039.1 = NW_026248825.1 Primary Assembly 29061 na manual_scaffold_103_ctg1 unplaced-scaffold na na JAJGQY010000040.1 = NW_026248826.1 Primary Assembly 29001 na manual_scaffold_104_ctg1 unplaced-scaffold na na JAJGQY010000041.1 = NW_026248827.1 Primary Assembly 28846 na manual_scaffold_105_ctg1 unplaced-scaffold na na JAJGQY010000042.1 = NW_026248828.1 Primary Assembly 28840 na manual_scaffold_106_ctg1 unplaced-scaffold na na JAJGQY010000043.1 = NW_026248829.1 Primary Assembly 28811 na manual_scaffold_107_ctg1 unplaced-scaffold na na JAJGQY010000044.1 = NW_026248830.1 Primary Assembly 28278 na manual_scaffold_108_ctg1 unplaced-scaffold na na JAJGQY010000045.1 = NW_026248831.1 Primary Assembly 27252 na manual_scaffold_109_ctg1 unplaced-scaffold na na JAJGQY010000046.1 = NW_026248832.1 Primary Assembly 25881 na manual_scaffold_110_ctg1 unplaced-scaffold na na JAJGQY010000047.1 = NW_026248833.1 Primary Assembly 25452 na manual_scaffold_111_ctg1 unplaced-scaffold na na JAJGQY010000048.1 = NW_026248834.1 Primary Assembly 25416 na manual_scaffold_112_ctg1 unplaced-scaffold na na JAJGQY010000049.1 = NW_026248835.1 Primary Assembly 25240 na manual_scaffold_113_ctg1 unplaced-scaffold na na JAJGQY010000050.1 = NW_026248836.1 Primary Assembly 25080 na manual_scaffold_114_ctg1 unplaced-scaffold na na JAJGQY010000051.1 = NW_026248837.1 Primary Assembly 25046 na manual_scaffold_115_ctg1 unplaced-scaffold na na JAJGQY010000052.1 = NW_026248838.1 Primary Assembly 24946 na manual_scaffold_116_ctg1 unplaced-scaffold na na JAJGQY010000053.1 = NW_026248839.1 Primary Assembly 24767 na manual_scaffold_117_ctg1 unplaced-scaffold na na JAJGQY010000054.1 = NW_026248840.1 Primary Assembly 24198 na manual_scaffold_118_ctg1 unplaced-scaffold na na JAJGQY010000055.1 = NW_026248841.1 Primary Assembly 23081 na manual_scaffold_119_ctg1 unplaced-scaffold na na JAJGQY010000056.1 = NW_026248842.1 Primary Assembly 22799 na manual_scaffold_120_ctg1 unplaced-scaffold na na JAJGQY010000057.1 = NW_026248843.1 Primary Assembly 21391 na manual_scaffold_121_ctg1 unplaced-scaffold na na JAJGQY010000058.1 = NW_026248844.1 Primary Assembly 20157 na manual_scaffold_122_ctg1 unplaced-scaffold na na JAJGQY010000059.1 = NW_026248845.1 Primary Assembly 12519 na manual_scaffold_123_ctg1 unplaced-scaffold na na JAJGQY010000060.1 = NW_026248846.1 Primary Assembly 10272 na manual_scaffold_124_ctg1 unplaced-scaffold na na JAJGQY010000061.1 = NW_026248847.1 Primary Assembly 5569 na manual_scaffold_30_ctg1 unplaced-scaffold na na JAJGQY010000062.1 = NW_026248848.1 Primary Assembly 1214676 na manual_scaffold_34_ctg1 unplaced-scaffold na na JAJGQY010000063.1 = NW_026248849.1 Primary Assembly 558556 na manual_scaffold_36_ctg1 unplaced-scaffold na na JAJGQY010000064.1 = NW_026248850.1 Primary Assembly 362004 na manual_scaffold_39_ctg1 unplaced-scaffold na na JAJGQY010000065.1 = NW_026248851.1 Primary Assembly 280757 na manual_scaffold_41_ctg1 unplaced-scaffold na na JAJGQY010000066.1 = NW_026248852.1 Primary Assembly 186325 na manual_scaffold_44_ctg1 unplaced-scaffold na na JAJGQY010000067.1 = NW_026248853.1 Primary Assembly 141784 na manual_scaffold_45_ctg1 unplaced-scaffold na na JAJGQY010000068.1 = NW_026248854.1 Primary Assembly 138476 na manual_scaffold_49_ctg1 unplaced-scaffold na na JAJGQY010000069.1 = NW_026248855.1 Primary Assembly 108127 na manual_scaffold_51_ctg1 unplaced-scaffold na na JAJGQY010000070.1 = NW_026248856.1 Primary Assembly 98189 na manual_scaffold_52_ctg1 unplaced-scaffold na na JAJGQY010000071.1 = NW_026248857.1 Primary Assembly 94680 na manual_scaffold_53_ctg1 unplaced-scaffold na na JAJGQY010000072.1 = NW_026248858.1 Primary Assembly 93543 na manual_scaffold_57_ctg1 unplaced-scaffold na na JAJGQY010000073.1 = NW_026248859.1 Primary Assembly 80440 na manual_scaffold_58_ctg1 unplaced-scaffold na na JAJGQY010000074.1 = NW_026248860.1 Primary Assembly 79206 na manual_scaffold_62_ctg1 unplaced-scaffold na na JAJGQY010000075.1 = NW_026248861.1 Primary Assembly 60764 na manual_scaffold_64_ctg1 unplaced-scaffold na na JAJGQY010000076.1 = NW_026248862.1 Primary Assembly 57272 na manual_scaffold_65_ctg1 unplaced-scaffold na na JAJGQY010000077.1 = NW_026248863.1 Primary Assembly 55295 na manual_scaffold_66_ctg1 unplaced-scaffold na na JAJGQY010000078.1 = NW_026248864.1 Primary Assembly 54259 na manual_scaffold_67_ctg1 unplaced-scaffold na na JAJGQY010000079.1 = NW_026248865.1 Primary Assembly 49658 na manual_scaffold_68_ctg1 unplaced-scaffold na na JAJGQY010000080.1 = NW_026248866.1 Primary Assembly 46892 na manual_scaffold_69_ctg1 unplaced-scaffold na na JAJGQY010000081.1 = NW_026248867.1 Primary Assembly 45407 na manual_scaffold_70_ctg1 unplaced-scaffold na na JAJGQY010000082.1 = NW_026248868.1 Primary Assembly 45388 na manual_scaffold_71_ctg1 unplaced-scaffold na na JAJGQY010000083.1 = NW_026248869.1 Primary Assembly 44553 na manual_scaffold_72_ctg1 unplaced-scaffold na na JAJGQY010000084.1 = NW_026248870.1 Primary Assembly 43968 na manual_scaffold_74_ctg1 unplaced-scaffold na na JAJGQY010000085.1 = NW_026248871.1 Primary Assembly 42542 na manual_scaffold_75_ctg1 unplaced-scaffold na na JAJGQY010000086.1 = NW_026248872.1 Primary Assembly 42276 na manual_scaffold_76_ctg1 unplaced-scaffold na na JAJGQY010000087.1 = NW_026248873.1 Primary Assembly 41966 na manual_scaffold_77_ctg1 unplaced-scaffold na na JAJGQY010000088.1 = NW_026248874.1 Primary Assembly 40759 na manual_scaffold_78_ctg1 unplaced-scaffold na na JAJGQY010000089.1 = NW_026248875.1 Primary Assembly 40558 na manual_scaffold_79_ctg1 unplaced-scaffold na na JAJGQY010000090.1 = NW_026248876.1 Primary Assembly 38424 na manual_scaffold_80_ctg1 unplaced-scaffold na na JAJGQY010000091.1 = NW_026248877.1 Primary Assembly 38388 na manual_scaffold_81_ctg1 unplaced-scaffold na na JAJGQY010000092.1 = NW_026248878.1 Primary Assembly 38249 na manual_scaffold_82_ctg1 unplaced-scaffold na na JAJGQY010000093.1 = NW_026248879.1 Primary Assembly 38196 na manual_scaffold_83_ctg1 unplaced-scaffold na na JAJGQY010000094.1 = NW_026248880.1 Primary Assembly 37572 na manual_scaffold_84_ctg1 unplaced-scaffold na na JAJGQY010000095.1 = NW_026248881.1 Primary Assembly 36874 na manual_scaffold_85_ctg1 unplaced-scaffold na na JAJGQY010000096.1 = NW_026248882.1 Primary Assembly 35522 na manual_scaffold_86_ctg1 unplaced-scaffold na na JAJGQY010000097.1 = NW_026248883.1 Primary Assembly 35005 na manual_scaffold_87_ctg1 unplaced-scaffold na na JAJGQY010000098.1 = NW_026248884.1 Primary Assembly 34795 na manual_scaffold_88_ctg1 unplaced-scaffold na na JAJGQY010000099.1 = NW_026248885.1 Primary Assembly 34198 na manual_scaffold_89_ctg1 unplaced-scaffold na na JAJGQY010000100.1 = NW_026248886.1 Primary Assembly 34017 na manual_scaffold_90_ctg1 unplaced-scaffold na na JAJGQY010000101.1 = NW_026248887.1 Primary Assembly 33519 na manual_scaffold_91_ctg1 unplaced-scaffold na na JAJGQY010000102.1 = NW_026248888.1 Primary Assembly 33252 na manual_scaffold_93_ctg1 unplaced-scaffold na na JAJGQY010000103.1 = NW_026248889.1 Primary Assembly 33004 na manual_scaffold_94_ctg1 unplaced-scaffold na na JAJGQY010000104.1 = NW_026248890.1 Primary Assembly 31555 na manual_scaffold_95_ctg1 unplaced-scaffold na na JAJGQY010000105.1 = NW_026248891.1 Primary Assembly 31495 na manual_scaffold_96_ctg1 unplaced-scaffold na na JAJGQY010000106.1 = NW_026248892.1 Primary Assembly 30376 na manual_scaffold_97_ctg1 unplaced-scaffold na na JAJGQY010000107.1 = NW_026248893.1 Primary Assembly 30362 na manual_scaffold_98_ctg1 unplaced-scaffold na na JAJGQY010000108.1 = NW_026248894.1 Primary Assembly 30193 na manual_scaffold_99_ctg1 unplaced-scaffold na na JAJGQY010000109.1 = NW_026248895.1 Primary Assembly 30030 na MT assembled-molecule MT Mitochondrion na <> NC_008540.1 non-nuclear 17037 na