# Assembly name: fTauAds1.pri.cur # Organism name: Tautogolabrus adspersus (cunner) # Isolate: fTauAds1 # Sex: male # Taxid: 34787 # BioSample: SAMN22589422 # BioProject: PRJNA774878 # Submitter: Vertebrate Genomes Project # Date: 2021-11-05 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAJGRF01 # Assembly method: FALCON v. 2018.31.08-03.06; FALCON unzip v. SMRTLink8, pbalign:0.3.2,; purge_dups v. 1.2.5; scaff10X v. 4.1.0; Bionano Solve DLS v. 3.4_06042019a; Arrow polishing and gap filling v. pbgcpp:1.9.0.1; Longranger Align v. 2.2.2; Deepvariant v. 1.1.0 # Expected final version: no # Genome coverage: 103.79x # Sequencing technology: PacBio Sequel II CLR; 10X Gemonics linked reads; Bionano Genomics DLS; Arima Genomics Hi-C v1 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_020745685.1 # Linked assembly: GCA_020745675.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_020745715.1 Primary Assembly ## GCA_020745725.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM036534.1 <> na Primary Assembly 37089861 na SUPER_2 assembled-molecule 2 Chromosome CM036535.1 <> na Primary Assembly 36453828 na SUPER_3 assembled-molecule 3 Chromosome CM036536.1 <> na Primary Assembly 35756311 na SUPER_4 assembled-molecule 4 Chromosome CM036537.1 <> na Primary Assembly 35697881 na SUPER_5 assembled-molecule 5 Chromosome CM036538.1 <> na Primary Assembly 34651172 na SUPER_6 assembled-molecule 6 Chromosome CM036539.1 <> na Primary Assembly 34031112 na SUPER_7 assembled-molecule 7 Chromosome CM036540.1 <> na Primary Assembly 33530406 na SUPER_8 assembled-molecule 8 Chromosome CM036541.1 <> na Primary Assembly 32813921 na SUPER_9 assembled-molecule 9 Chromosome CM036542.1 <> na Primary Assembly 32538578 na SUPER_10 assembled-molecule 10 Chromosome CM036543.1 <> na Primary Assembly 32147969 na SUPER_11 assembled-molecule 11 Chromosome CM036544.1 <> na Primary Assembly 31651171 na SUPER_12 assembled-molecule 12 Chromosome CM036545.1 <> na Primary Assembly 31691308 na SUPER_13 assembled-molecule 13 Chromosome CM036546.1 <> na Primary Assembly 31106095 na SUPER_14 assembled-molecule 14 Chromosome CM036547.1 <> na Primary Assembly 30468290 na SUPER_15 assembled-molecule 15 Chromosome CM036548.1 <> na Primary Assembly 29849804 na SUPER_16 assembled-molecule 16 Chromosome CM036549.1 <> na Primary Assembly 29539442 na SUPER_17 assembled-molecule 17 Chromosome CM036550.1 <> na Primary Assembly 28512809 na SUPER_18 assembled-molecule 18 Chromosome CM036551.1 <> na Primary Assembly 27749821 na SUPER_19 assembled-molecule 19 Chromosome CM036552.1 <> na Primary Assembly 27112668 na SUPER_20 assembled-molecule 20 Chromosome CM036553.1 <> na Primary Assembly 26430270 na SUPER_21 assembled-molecule 21 Chromosome CM036554.1 <> na Primary Assembly 25307336 na SUPER_22 assembled-molecule 22 Chromosome CM036555.1 <> na Primary Assembly 22187871 na SUPER_23 assembled-molecule 23 Chromosome CM036556.1 <> na Primary Assembly 21304941 na SUPER_24 assembled-molecule 24 Chromosome CM036557.1 <> na Primary Assembly 15181429 na scaffold_103_ctg1 unplaced-scaffold na na JAJGRF010000026.1 <> na Primary Assembly 34535 na scaffold_105_ctg1 unplaced-scaffold na na JAJGRF010000027.1 <> na Primary Assembly 31681 na scaffold_106_ctg1 unplaced-scaffold na na JAJGRF010000028.1 <> na Primary Assembly 30394 na scaffold_107_ctg1 unplaced-scaffold na na JAJGRF010000029.1 <> na Primary Assembly 30267 na scaffold_109_ctg1 unplaced-scaffold na na JAJGRF010000030.1 <> na Primary Assembly 28980 na scaffold_110_ctg1 unplaced-scaffold na na JAJGRF010000031.1 <> na Primary Assembly 28868 na scaffold_112_ctg1 unplaced-scaffold na na JAJGRF010000032.1 <> na Primary Assembly 27892 na scaffold_114_ctg1 unplaced-scaffold na na JAJGRF010000033.1 <> na Primary Assembly 25326 na scaffold_115_ctg1 unplaced-scaffold na na JAJGRF010000034.1 <> na Primary Assembly 25208 na scaffold_116_ctg1 unplaced-scaffold na na JAJGRF010000035.1 <> na Primary Assembly 24205 na scaffold_117_ctg1 unplaced-scaffold na na JAJGRF010000036.1 <> na Primary Assembly 23973 na scaffold_118_ctg1 unplaced-scaffold na na JAJGRF010000037.1 <> na Primary Assembly 22800 na scaffold_119_ctg1 unplaced-scaffold na na JAJGRF010000038.1 <> na Primary Assembly 22415 na scaffold_120_ctg1 unplaced-scaffold na na JAJGRF010000039.1 <> na Primary Assembly 22134 na scaffold_121_ctg1 unplaced-scaffold na na JAJGRF010000040.1 <> na Primary Assembly 21808 na scaffold_122_ctg1 unplaced-scaffold na na JAJGRF010000041.1 <> na Primary Assembly 20579 na scaffold_123_ctg1 unplaced-scaffold na na JAJGRF010000042.1 <> na Primary Assembly 20428 na scaffold_124_ctg1 unplaced-scaffold na na JAJGRF010000043.1 <> na Primary Assembly 18618 na scaffold_126_ctg1 unplaced-scaffold na na JAJGRF010000044.1 <> na Primary Assembly 17850 na scaffold_127_ctg1 unplaced-scaffold na na JAJGRF010000045.1 <> na Primary Assembly 17675 na scaffold_128_ctg1 unplaced-scaffold na na JAJGRF010000046.1 <> na Primary Assembly 17505 na scaffold_129_ctg1 unplaced-scaffold na na JAJGRF010000047.1 <> na Primary Assembly 17530 na scaffold_130_ctg1 unplaced-scaffold na na JAJGRF010000048.1 <> na Primary Assembly 16211 na scaffold_131_ctg1 unplaced-scaffold na na JAJGRF010000049.1 <> na Primary Assembly 13695 na scaffold_132_ctg1 unplaced-scaffold na na JAJGRF010000050.1 <> na Primary Assembly 12600 na scaffold_133_ctg1 unplaced-scaffold na na JAJGRF010000051.1 <> na Primary Assembly 12466 na scaffold_134_ctg1 unplaced-scaffold na na JAJGRF010000052.1 <> na Primary Assembly 10755 na scaffold_135_ctg1 unplaced-scaffold na na JAJGRF010000053.1 <> na Primary Assembly 10415 na scaffold_136_ctg1 unplaced-scaffold na na JAJGRF010000054.1 <> na Primary Assembly 7081 na scaffold_137_ctg1 unplaced-scaffold na na JAJGRF010000055.1 <> na Primary Assembly 5958 na scaffold_138_ctg1 unplaced-scaffold na na JAJGRF010000056.1 <> na Primary Assembly 5701 na scaffold_139_ctg1 unplaced-scaffold na na JAJGRF010000057.1 <> na Primary Assembly 5438 na scaffold_140_ctg1 unplaced-scaffold na na JAJGRF010000058.1 <> na Primary Assembly 4965 na scaffold_141_ctg1 unplaced-scaffold na na JAJGRF010000059.1 <> na Primary Assembly 4136 na scaffold_142_ctg1 unplaced-scaffold na na JAJGRF010000060.1 <> na Primary Assembly 3701 na scaffold_143_ctg1 unplaced-scaffold na na JAJGRF010000061.1 <> na Primary Assembly 1703 na scaffold_144_ctg1 unplaced-scaffold na na JAJGRF010000062.1 <> na Primary Assembly 533 na scaffold_67_ctg1 unplaced-scaffold na na JAJGRF010000063.1 <> na Primary Assembly 44194 na scaffold_83_ctg1 unplaced-scaffold na na JAJGRF010000064.1 <> na Primary Assembly 71174 na fTauAds1 assembled-molecule MT Mitochondrion CM036584.1 <> na non-nuclear 16494 na