# Assembly name: ASM2102059v1 # Organism name: Acanthamoeba castellanii (eukaryotes) # Infraspecific name: strain=C3 # Taxid: 5755 # BioSample: SAMN13907871 # BioProject: PRJNA599339 # Submitter: Institut Pasteur # Date: 2021-12-01 # Assembly type: haploid # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JAJGAO01 # Assembly method: Flye v. 2.3.6; instagraal v. 0.1.2 # Expected final version: yes # Genome coverage: 50.0x # Sequencing technology: Oxford Nanopore; HiC; Illumina NovaSeq # GenBank assembly accession: GCA_021020595.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_021020625.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold_1 unplaced-scaffold na na JAJGAO010000001.1 <> na Primary Assembly 2405921 na scaffold_10 unplaced-scaffold na na JAJGAO010000010.1 <> na Primary Assembly 1468512 na scaffold_100 unplaced-scaffold na na JAJGAO010000099.1 <> na Primary Assembly 8295 na scaffold_101 unplaced-scaffold na na JAJGAO010000100.1 <> na Primary Assembly 8103 na scaffold_102 unplaced-scaffold na na JAJGAO010000101.1 <> na Primary Assembly 7997 na scaffold_103 unplaced-scaffold na na JAJGAO010000102.1 <> na Primary Assembly 7796 na scaffold_104 unplaced-scaffold na na JAJGAO010000103.1 <> na Primary Assembly 7687 na scaffold_105 unplaced-scaffold na na JAJGAO010000104.1 <> na Primary Assembly 7605 na scaffold_106 unplaced-scaffold na na JAJGAO010000105.1 <> na Primary Assembly 7353 na scaffold_107 unplaced-scaffold na na JAJGAO010000106.1 <> na Primary Assembly 7085 na scaffold_108 unplaced-scaffold na na JAJGAO010000107.1 <> na Primary Assembly 6189 na scaffold_109 unplaced-scaffold na na JAJGAO010000108.1 <> na Primary Assembly 6059 na scaffold_11 unplaced-scaffold na na JAJGAO010000011.1 <> na Primary Assembly 1455171 na scaffold_110 unplaced-scaffold na na JAJGAO010000109.1 <> na Primary Assembly 5998 na scaffold_111 unplaced-scaffold na na JAJGAO010000110.1 <> na Primary Assembly 5355 na scaffold_112 unplaced-scaffold na na JAJGAO010000125.1 <> na Primary Assembly 3042 na scaffold_113 unplaced-scaffold na na JAJGAO010000111.1 <> na Primary Assembly 5273 na scaffold_115 unplaced-scaffold na na JAJGAO010000112.1 <> na Primary Assembly 5097 na scaffold_116 unplaced-scaffold na na JAJGAO010000113.1 <> na Primary Assembly 4916 na scaffold_117 unplaced-scaffold na na JAJGAO010000114.1 <> na Primary Assembly 4908 na scaffold_12 unplaced-scaffold na na JAJGAO010000012.1 <> na Primary Assembly 1428657 na scaffold_121 unplaced-scaffold na na JAJGAO010000115.1 <> na Primary Assembly 4476 na scaffold_123 unplaced-scaffold na na JAJGAO010000116.1 <> na Primary Assembly 4313 na scaffold_124 unplaced-scaffold na na JAJGAO010000117.1 <> na Primary Assembly 4283 na scaffold_127 unplaced-scaffold na na JAJGAO010000118.1 <> na Primary Assembly 3958 na scaffold_128 unplaced-scaffold na na JAJGAO010000119.1 <> na Primary Assembly 3712 na scaffold_129 unplaced-scaffold na na JAJGAO010000120.1 <> na Primary Assembly 3640 na scaffold_13 unplaced-scaffold na na JAJGAO010000013.1 <> na Primary Assembly 1423892 na scaffold_132 unplaced-scaffold na na JAJGAO010000121.1 <> na Primary Assembly 3562 na scaffold_134 unplaced-scaffold na na JAJGAO010000122.1 <> na Primary Assembly 3448 na scaffold_135 unplaced-scaffold na na JAJGAO010000123.1 <> na Primary Assembly 3352 na scaffold_136 unplaced-scaffold na na JAJGAO010000124.1 <> na Primary Assembly 3240 na scaffold_137 unplaced-scaffold na na JAJGAO010000126.1 <> na Primary Assembly 2935 na scaffold_138 unplaced-scaffold na na JAJGAO010000127.1 <> na Primary Assembly 2866 na scaffold_14 unplaced-scaffold na na JAJGAO010000014.1 <> na Primary Assembly 1400134 na scaffold_141 unplaced-scaffold na na JAJGAO010000128.1 <> na Primary Assembly 2717 na scaffold_142 unplaced-scaffold na na JAJGAO010000129.1 <> na Primary Assembly 2689 na scaffold_146 unplaced-scaffold na na JAJGAO010000130.1 <> na Primary Assembly 2637 na scaffold_147 unplaced-scaffold na na JAJGAO010000131.1 <> na Primary Assembly 2627 na scaffold_148 unplaced-scaffold na na JAJGAO010000132.1 <> na Primary Assembly 2543 na scaffold_149 unplaced-scaffold na na JAJGAO010000133.1 <> na Primary Assembly 2470 na scaffold_15 unplaced-scaffold na na JAJGAO010000015.1 <> na Primary Assembly 1381260 na scaffold_150 unplaced-scaffold na na JAJGAO010000134.1 <> na Primary Assembly 2339 na scaffold_151 unplaced-scaffold na na JAJGAO010000135.1 <> na Primary Assembly 2278 na scaffold_152 unplaced-scaffold na na JAJGAO010000136.1 <> na Primary Assembly 2262 na scaffold_154 unplaced-scaffold na na JAJGAO010000137.1 <> na Primary Assembly 2204 na scaffold_155 unplaced-scaffold na na JAJGAO010000138.1 <> na Primary Assembly 1987 na scaffold_158 unplaced-scaffold na na JAJGAO010000139.1 <> na Primary Assembly 1832 na scaffold_16 unplaced-scaffold na na JAJGAO010000016.1 <> na Primary Assembly 1331497 na scaffold_162 unplaced-scaffold na na JAJGAO010000140.1 <> na Primary Assembly 1710 na scaffold_164 unplaced-scaffold na na JAJGAO010000141.1 <> na Primary Assembly 1617 na scaffold_165 unplaced-scaffold na na JAJGAO010000142.1 <> na Primary Assembly 1604 na scaffold_168 unplaced-scaffold na na JAJGAO010000143.1 <> na Primary Assembly 1543 na scaffold_169 unplaced-scaffold na na JAJGAO010000144.1 <> na Primary Assembly 1531 na scaffold_17 unplaced-scaffold na na JAJGAO010000017.1 <> na Primary Assembly 1309859 na scaffold_170 unplaced-scaffold na na JAJGAO010000145.1 <> na Primary Assembly 1507 na scaffold_171 unplaced-scaffold na na JAJGAO010000146.1 <> na Primary Assembly 1486 na scaffold_173 unplaced-scaffold na na JAJGAO010000147.1 <> na Primary Assembly 1358 na scaffold_174 unplaced-scaffold na na JAJGAO010000148.1 <> na Primary Assembly 1352 na scaffold_176 unplaced-scaffold na na JAJGAO010000149.1 <> na Primary Assembly 1306 na scaffold_177 unplaced-scaffold na na JAJGAO010000150.1 <> na Primary Assembly 1301 na scaffold_178 unplaced-scaffold na na JAJGAO010000151.1 <> na Primary Assembly 1285 na scaffold_179 unplaced-scaffold na na JAJGAO010000152.1 <> na Primary Assembly 1276 na scaffold_18 unplaced-scaffold na na JAJGAO010000018.1 <> na Primary Assembly 1275952 na scaffold_180 unplaced-scaffold na na JAJGAO010000153.1 <> na Primary Assembly 1163 na scaffold_183 unplaced-scaffold na na JAJGAO010000154.1 <> na Primary Assembly 1118 na scaffold_186 unplaced-scaffold na na JAJGAO010000155.1 <> na Primary Assembly 1065 na scaffold_188 unplaced-scaffold na na JAJGAO010000156.1 <> na Primary Assembly 994 na scaffold_19 unplaced-scaffold na na JAJGAO010000019.1 <> na Primary Assembly 1223026 na scaffold_190 unplaced-scaffold na na JAJGAO010000157.1 <> na Primary Assembly 978 na scaffold_191 unplaced-scaffold na na JAJGAO010000158.1 <> na Primary Assembly 963 na scaffold_192 unplaced-scaffold na na JAJGAO010000159.1 <> na Primary Assembly 948 na scaffold_193 unplaced-scaffold na na JAJGAO010000160.1 <> na Primary Assembly 916 na scaffold_196 unplaced-scaffold na na JAJGAO010000161.1 <> na Primary Assembly 845 na scaffold_197 unplaced-scaffold na na JAJGAO010000162.1 <> na Primary Assembly 842 na scaffold_198 unplaced-scaffold na na JAJGAO010000163.1 <> na Primary Assembly 830 na scaffold_199 unplaced-scaffold na na JAJGAO010000164.1 <> na Primary Assembly 801 na scaffold_2 unplaced-scaffold na na JAJGAO010000002.1 <> na Primary Assembly 2335055 na scaffold_20 unplaced-scaffold na na JAJGAO010000020.1 <> na Primary Assembly 1216527 na scaffold_200 unplaced-scaffold na na JAJGAO010000165.1 <> na Primary Assembly 786 na scaffold_201 unplaced-scaffold na na JAJGAO010000166.1 <> na Primary Assembly 774 na scaffold_202 unplaced-scaffold na na JAJGAO010000167.1 <> na Primary Assembly 759 na scaffold_21 unplaced-scaffold na na JAJGAO010000021.1 <> na Primary Assembly 1185729 na scaffold_214 unplaced-scaffold na na JAJGAO010000168.1 <> na Primary Assembly 647 na scaffold_217 unplaced-scaffold na na JAJGAO010000169.1 <> na Primary Assembly 580 na scaffold_218 unplaced-scaffold na na JAJGAO010000170.1 <> na Primary Assembly 578 na scaffold_219 unplaced-scaffold na na JAJGAO010000171.1 <> na Primary Assembly 561 na scaffold_22 unplaced-scaffold na na JAJGAO010000022.1 <> na Primary Assembly 1173578 na scaffold_224 unplaced-scaffold na na JAJGAO010000172.1 <> na Primary Assembly 543 na scaffold_225 unplaced-scaffold na na JAJGAO010000173.1 <> na Primary Assembly 542 na scaffold_227 unplaced-scaffold na na JAJGAO010000174.1 <> na Primary Assembly 524 na scaffold_23 unplaced-scaffold na na JAJGAO010000023.1 <> na Primary Assembly 1141753 na scaffold_24 unplaced-scaffold na na JAJGAO010000024.1 <> na Primary Assembly 1128560 na scaffold_25 unplaced-scaffold na na JAJGAO010000025.1 <> na Primary Assembly 1108262 na scaffold_26 unplaced-scaffold na na JAJGAO010000026.1 <> na Primary Assembly 1076649 na scaffold_27 unplaced-scaffold na na JAJGAO010000027.1 <> na Primary Assembly 1037948 na scaffold_28 unplaced-scaffold na na JAJGAO010000028.1 <> na Primary Assembly 959369 na scaffold_29 unplaced-scaffold na na JAJGAO010000029.1 <> na Primary Assembly 945207 na scaffold_3 unplaced-scaffold na na JAJGAO010000003.1 <> na Primary Assembly 1867912 na scaffold_30 unplaced-scaffold na na JAJGAO010000030.1 <> na Primary Assembly 935971 na scaffold_31 unplaced-scaffold na na JAJGAO010000031.1 <> na Primary Assembly 895207 na scaffold_32 unplaced-scaffold na na JAJGAO010000032.1 <> na Primary Assembly 711421 na scaffold_33 unplaced-scaffold na na JAJGAO010000033.1 <> na Primary Assembly 352271 na scaffold_34 unplaced-scaffold na na JAJGAO010000034.1 <> na Primary Assembly 296768 na scaffold_35 unplaced-scaffold na na JAJGAO010000035.1 <> na Primary Assembly 253978 na scaffold_36 unplaced-scaffold na na JAJGAO010000036.1 <> na Primary Assembly 100727 na scaffold_37 unplaced-scaffold na na JAJGAO010000037.1 <> na Primary Assembly 83403 na scaffold_38 unplaced-scaffold na na JAJGAO010000038.1 <> na Primary Assembly 78121 na scaffold_39 unplaced-scaffold na na JAJGAO010000039.1 <> na Primary Assembly 77439 na scaffold_4 unplaced-scaffold na na JAJGAO010000004.1 <> na Primary Assembly 1653343 na scaffold_40 unplaced-scaffold na na JAJGAO010000040.1 <> na Primary Assembly 74955 na scaffold_41 unplaced-scaffold na na JAJGAO010000041.1 <> na Primary Assembly 67258 na scaffold_42 unplaced-scaffold na na JAJGAO010000042.1 <> na Primary Assembly 59611 na scaffold_43 unplaced-scaffold na na JAJGAO010000043.1 <> na Primary Assembly 55367 na scaffold_44 unplaced-scaffold na na JAJGAO010000044.1 <> na Primary Assembly 54650 na scaffold_45 unplaced-scaffold na na JAJGAO010000045.1 <> na Primary Assembly 50722 na scaffold_46 unplaced-scaffold na na JAJGAO010000046.1 <> na Primary Assembly 49608 na scaffold_47 unplaced-scaffold na na JAJGAO010000047.1 <> na Primary Assembly 34028 na scaffold_48 unplaced-scaffold na na JAJGAO010000048.1 <> na Primary Assembly 32624 na scaffold_49 unplaced-scaffold na na JAJGAO010000049.1 <> na Primary Assembly 32210 na scaffold_5 unplaced-scaffold na na JAJGAO010000005.1 <> na Primary Assembly 1648923 na scaffold_50 unplaced-scaffold na na JAJGAO010000050.1 <> na Primary Assembly 31583 na scaffold_51 unplaced-scaffold na na JAJGAO010000051.1 <> na Primary Assembly 31191 na scaffold_52 unplaced-scaffold na na JAJGAO010000052.1 <> na Primary Assembly 31115 na scaffold_53 unplaced-scaffold na na JAJGAO010000053.1 <> na Primary Assembly 30159 na scaffold_54 unplaced-scaffold na na JAJGAO010000054.1 <> na Primary Assembly 29944 na scaffold_55 unplaced-scaffold na na JAJGAO010000055.1 <> na Primary Assembly 29585 na scaffold_56 unplaced-scaffold na na JAJGAO010000056.1 <> na Primary Assembly 28667 na scaffold_57 unplaced-scaffold na na JAJGAO010000057.1 <> na Primary Assembly 28161 na scaffold_58 unplaced-scaffold na na JAJGAO010000058.1 <> na Primary Assembly 28048 na scaffold_59 unplaced-scaffold na na JAJGAO010000059.1 <> na Primary Assembly 27999 na scaffold_6 unplaced-scaffold na na JAJGAO010000006.1 <> na Primary Assembly 1531120 na scaffold_60 unplaced-scaffold na na JAJGAO010000060.1 <> na Primary Assembly 27903 na scaffold_61 unplaced-scaffold na na JAJGAO010000061.1 <> na Primary Assembly 27505 na scaffold_62 unplaced-scaffold na na JAJGAO010000062.1 <> na Primary Assembly 27155 na scaffold_63 unplaced-scaffold na na JAJGAO010000063.1 <> na Primary Assembly 26963 na scaffold_64 unplaced-scaffold na na JAJGAO010000064.1 <> na Primary Assembly 26649 na scaffold_65 unplaced-scaffold na na JAJGAO010000065.1 <> na Primary Assembly 26357 na scaffold_66 unplaced-scaffold na na JAJGAO010000066.1 <> na Primary Assembly 26235 na scaffold_67 unplaced-scaffold na na JAJGAO010000067.1 <> na Primary Assembly 25734 na scaffold_68 unplaced-scaffold na na JAJGAO010000068.1 <> na Primary Assembly 25259 na scaffold_69 unplaced-scaffold na na JAJGAO010000069.1 <> na Primary Assembly 24868 na scaffold_7 unplaced-scaffold na na JAJGAO010000007.1 <> na Primary Assembly 1526701 na scaffold_70 unplaced-scaffold na na JAJGAO010000070.1 <> na Primary Assembly 23748 na scaffold_71 unplaced-scaffold na na JAJGAO010000071.1 <> na Primary Assembly 23299 na scaffold_72 unplaced-scaffold na na JAJGAO010000072.1 <> na Primary Assembly 23203 na scaffold_73 unplaced-scaffold na na JAJGAO010000073.1 <> na Primary Assembly 23086 na scaffold_74 unplaced-scaffold na na JAJGAO010000074.1 <> na Primary Assembly 22843 na scaffold_75 unplaced-scaffold na na JAJGAO010000081.1 <> na Primary Assembly 18424 na scaffold_76 unplaced-scaffold na na JAJGAO010000075.1 <> na Primary Assembly 21552 na scaffold_77 unplaced-scaffold na na JAJGAO010000076.1 <> na Primary Assembly 21260 na scaffold_78 unplaced-scaffold na na JAJGAO010000077.1 <> na Primary Assembly 21002 na scaffold_79 unplaced-scaffold na na JAJGAO010000078.1 <> na Primary Assembly 19102 na scaffold_8 unplaced-scaffold na na JAJGAO010000008.1 <> na Primary Assembly 1497812 na scaffold_80 unplaced-scaffold na na JAJGAO010000079.1 <> na Primary Assembly 18858 na scaffold_81 unplaced-scaffold na na JAJGAO010000080.1 <> na Primary Assembly 18545 na scaffold_82 unplaced-scaffold na na JAJGAO010000082.1 <> na Primary Assembly 18115 na scaffold_83 unplaced-scaffold na na JAJGAO010000083.1 <> na Primary Assembly 17991 na scaffold_84 unplaced-scaffold na na JAJGAO010000084.1 <> na Primary Assembly 15868 na scaffold_85 unplaced-scaffold na na JAJGAO010000085.1 <> na Primary Assembly 15174 na scaffold_86 unplaced-scaffold na na JAJGAO010000086.1 <> na Primary Assembly 13762 na scaffold_87 unplaced-scaffold na na JAJGAO010000087.1 <> na Primary Assembly 12378 na scaffold_88 unplaced-scaffold na na JAJGAO010000088.1 <> na Primary Assembly 11211 na scaffold_89 unplaced-scaffold na na JAJGAO010000089.1 <> na Primary Assembly 9831 na scaffold_9 unplaced-scaffold na na JAJGAO010000009.1 <> na Primary Assembly 1485453 na scaffold_90 unplaced-scaffold na na JAJGAO010000090.1 <> na Primary Assembly 9788 na scaffold_91 unplaced-scaffold na na JAJGAO010000091.1 <> na Primary Assembly 9359 na scaffold_92 unplaced-scaffold na na JAJGAO010000092.1 <> na Primary Assembly 9286 na scaffold_93 unplaced-scaffold na na JAJGAO010000093.1 <> na Primary Assembly 9090 na scaffold_94 unplaced-scaffold na na JAJGAO010000094.1 <> na Primary Assembly 9078 na scaffold_95 unplaced-scaffold na na JAJGAO010000095.1 <> na Primary Assembly 8526 na scaffold_96 unplaced-scaffold na na JAJGAO010000097.1 <> na Primary Assembly 8489 na scaffold_97 unplaced-scaffold na na JAJGAO010000096.1 <> na Primary Assembly 8489 na scaffold_99 unplaced-scaffold na na JAJGAO010000098.1 <> na Primary Assembly 8332 na