# Assembly name: ASM2102060v1 # Organism name: Acanthamoeba castellanii (eukaryotes) # Infraspecific name: strain=Neff # Taxid: 5755 # BioSample: SAMN22645379 # BioProject: PRJNA599339 # Submitter: Institut Pasteur # Date: 2021-12-01 # Assembly type: haploid # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JAJGAP01 # Assembly method: Flye v. 2.3.6; instagraal v. 0.1.2 # Expected final version: yes # Genome coverage: 50.0x # Sequencing technology: HiC; Oxford Nanopore; Illumina NovaSeq # GenBank assembly accession: GCA_021020605.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_021020615.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold_1 unplaced-scaffold na na JAJGAP010000001.1 <> na Primary Assembly 2508300 na scaffold_10 unplaced-scaffold na na JAJGAP010000010.1 <> na Primary Assembly 1478790 na scaffold_100 unplaced-scaffold na na JAJGAP010000069.1 <> na Primary Assembly 2027 na scaffold_101 unplaced-scaffold na na JAJGAP010000070.1 <> na Primary Assembly 2011 na scaffold_102 unplaced-scaffold na na JAJGAP010000071.1 <> na Primary Assembly 1989 na scaffold_103 unplaced-scaffold na na JAJGAP010000072.1 <> na Primary Assembly 1977 na scaffold_104 unplaced-scaffold na na JAJGAP010000073.1 <> na Primary Assembly 1840 na scaffold_105 unplaced-scaffold na na JAJGAP010000074.1 <> na Primary Assembly 1789 na scaffold_106 unplaced-scaffold na na JAJGAP010000075.1 <> na Primary Assembly 1787 na scaffold_107 unplaced-scaffold na na JAJGAP010000076.1 <> na Primary Assembly 1772 na scaffold_109 unplaced-scaffold na na JAJGAP010000077.1 <> na Primary Assembly 1692 na scaffold_11 unplaced-scaffold na na JAJGAP010000011.1 <> na Primary Assembly 1467711 na scaffold_110 unplaced-scaffold na na JAJGAP010000078.1 <> na Primary Assembly 1681 na scaffold_113 unplaced-scaffold na na JAJGAP010000079.1 <> na Primary Assembly 1551 na scaffold_115 unplaced-scaffold na na JAJGAP010000080.1 <> na Primary Assembly 1496 na scaffold_116 unplaced-scaffold na na JAJGAP010000081.1 <> na Primary Assembly 1486 na scaffold_117 unplaced-scaffold na na JAJGAP010000082.1 <> na Primary Assembly 1399 na scaffold_12 unplaced-scaffold na na JAJGAP010000012.1 <> na Primary Assembly 1450623 na scaffold_120 unplaced-scaffold na na JAJGAP010000083.1 <> na Primary Assembly 1222 na scaffold_122 unplaced-scaffold na na JAJGAP010000084.1 <> na Primary Assembly 1217 na scaffold_123 unplaced-scaffold na na JAJGAP010000085.1 <> na Primary Assembly 1215 na scaffold_125 unplaced-scaffold na na JAJGAP010000086.1 <> na Primary Assembly 1169 na scaffold_128 unplaced-scaffold na na JAJGAP010000087.1 <> na Primary Assembly 1104 na scaffold_13 unplaced-scaffold na na JAJGAP010000013.1 <> na Primary Assembly 1404358 na scaffold_130 unplaced-scaffold na na JAJGAP010000088.1 <> na Primary Assembly 1041 na scaffold_131 unplaced-scaffold na na JAJGAP010000089.1 <> na Primary Assembly 1037 na scaffold_132 unplaced-scaffold na na JAJGAP010000090.1 <> na Primary Assembly 1022 na scaffold_135 unplaced-scaffold na na JAJGAP010000091.1 <> na Primary Assembly 945 na scaffold_136 unplaced-scaffold na na JAJGAP010000092.1 <> na Primary Assembly 943 na scaffold_137 unplaced-scaffold na na JAJGAP010000093.1 <> na Primary Assembly 916 na scaffold_138 unplaced-scaffold na na JAJGAP010000094.1 <> na Primary Assembly 914 na scaffold_139 unplaced-scaffold na na JAJGAP010000095.1 <> na Primary Assembly 911 na scaffold_14 unplaced-scaffold na na JAJGAP010000014.1 <> na Primary Assembly 1332098 na scaffold_140 unplaced-scaffold na na JAJGAP010000096.1 <> na Primary Assembly 887 na scaffold_141 unplaced-scaffold na na JAJGAP010000097.1 <> na Primary Assembly 874 na scaffold_142 unplaced-scaffold na na JAJGAP010000098.1 <> na Primary Assembly 871 na scaffold_144 unplaced-scaffold na na JAJGAP010000099.1 <> na Primary Assembly 831 na scaffold_146 unplaced-scaffold na na JAJGAP010000100.1 <> na Primary Assembly 816 na scaffold_148 unplaced-scaffold na na JAJGAP010000101.1 <> na Primary Assembly 803 na scaffold_15 unplaced-scaffold na na JAJGAP010000015.1 <> na Primary Assembly 1316795 na scaffold_152 unplaced-scaffold na na JAJGAP010000102.1 <> na Primary Assembly 689 na scaffold_153 unplaced-scaffold na na JAJGAP010000103.1 <> na Primary Assembly 673 na scaffold_154 unplaced-scaffold na na JAJGAP010000104.1 <> na Primary Assembly 671 na scaffold_156 unplaced-scaffold na na JAJGAP010000105.1 <> na Primary Assembly 635 na scaffold_158 unplaced-scaffold na na JAJGAP010000106.1 <> na Primary Assembly 559 na scaffold_16 unplaced-scaffold na na JAJGAP010000016.1 <> na Primary Assembly 1292070 na scaffold_160 unplaced-scaffold na na JAJGAP010000107.1 <> na Primary Assembly 551 na scaffold_162 unplaced-scaffold na na JAJGAP010000108.1 <> na Primary Assembly 533 na scaffold_165 unplaced-scaffold na na JAJGAP010000109.1 <> na Primary Assembly 483 na scaffold_167 unplaced-scaffold na na JAJGAP010000110.1 <> na Primary Assembly 414 na scaffold_169 unplaced-scaffold na na JAJGAP010000111.1 <> na Primary Assembly 393 na scaffold_17 unplaced-scaffold na na JAJGAP010000017.1 <> na Primary Assembly 1264657 na scaffold_18 unplaced-scaffold na na JAJGAP010000018.1 <> na Primary Assembly 1249384 na scaffold_19 unplaced-scaffold na na JAJGAP010000019.1 <> na Primary Assembly 1248233 na scaffold_2 unplaced-scaffold na na JAJGAP010000002.1 <> na Primary Assembly 2036287 na scaffold_20 unplaced-scaffold na na JAJGAP010000020.1 <> na Primary Assembly 1213070 na scaffold_21 unplaced-scaffold na na JAJGAP010000021.1 <> na Primary Assembly 1204695 na scaffold_22 unplaced-scaffold na na JAJGAP010000022.1 <> na Primary Assembly 1179946 na scaffold_23 unplaced-scaffold na na JAJGAP010000023.1 <> na Primary Assembly 1136062 na scaffold_24 unplaced-scaffold na na JAJGAP010000024.1 <> na Primary Assembly 1107752 na scaffold_25 unplaced-scaffold na na JAJGAP010000025.1 <> na Primary Assembly 1074339 na scaffold_26 unplaced-scaffold na na JAJGAP010000026.1 <> na Primary Assembly 1019340 na scaffold_27 unplaced-scaffold na na JAJGAP010000027.1 <> na Primary Assembly 1014713 na scaffold_28 unplaced-scaffold na na JAJGAP010000028.1 <> na Primary Assembly 948067 na scaffold_29 unplaced-scaffold na na JAJGAP010000029.1 <> na Primary Assembly 911382 na scaffold_3 unplaced-scaffold na na JAJGAP010000003.1 <> na Primary Assembly 1871072 na scaffold_30 unplaced-scaffold na na JAJGAP010000030.1 <> na Primary Assembly 894818 na scaffold_31 unplaced-scaffold na na JAJGAP010000031.1 <> na Primary Assembly 887977 na scaffold_32 unplaced-scaffold na na JAJGAP010000032.1 <> na Primary Assembly 777657 na scaffold_33 unplaced-scaffold na na JAJGAP010000033.1 <> na Primary Assembly 337289 na scaffold_34 unplaced-scaffold na na JAJGAP010000034.1 <> na Primary Assembly 104558 na scaffold_35 unplaced-scaffold na na JAJGAP010000035.1 <> na Primary Assembly 103473 na scaffold_36 unplaced-scaffold na na JAJGAP010000036.1 <> na Primary Assembly 83233 na scaffold_37 unplaced-scaffold na na JAJGAP010000037.1 <> na Primary Assembly 43006 na scaffold_38 unplaced-scaffold na na JAJGAP010000038.1 <> na Primary Assembly 38926 na scaffold_39 unplaced-scaffold na na JAJGAP010000039.1 <> na Primary Assembly 36687 na scaffold_4 unplaced-scaffold na na JAJGAP010000004.1 <> na Primary Assembly 1696801 na scaffold_40 unplaced-scaffold na na JAJGAP010000040.1 <> na Primary Assembly 32963 na scaffold_41 unplaced-scaffold na na JAJGAP010000041.1 <> na Primary Assembly 29788 na scaffold_42 unplaced-scaffold na na JAJGAP010000042.1 <> na Primary Assembly 19852 na scaffold_43 unplaced-scaffold na na JAJGAP010000043.1 <> na Primary Assembly 14629 na scaffold_44 unplaced-scaffold na na JAJGAP010000044.1 <> na Primary Assembly 13706 na scaffold_45 unplaced-scaffold na na JAJGAP010000045.1 <> na Primary Assembly 13450 na scaffold_46 unplaced-scaffold na na JAJGAP010000046.1 <> na Primary Assembly 12471 na scaffold_47 unplaced-scaffold na na JAJGAP010000047.1 <> na Primary Assembly 11193 na scaffold_48 unplaced-scaffold na na JAJGAP010000048.1 <> na Primary Assembly 11100 na scaffold_49 unplaced-scaffold na na JAJGAP010000049.1 <> na Primary Assembly 10437 na scaffold_5 unplaced-scaffold na na JAJGAP010000005.1 <> na Primary Assembly 1671642 na scaffold_50 unplaced-scaffold na na JAJGAP010000050.1 <> na Primary Assembly 9450 na scaffold_51 unplaced-scaffold na na JAJGAP010000051.1 <> na Primary Assembly 9187 na scaffold_52 unplaced-scaffold na na JAJGAP010000052.1 <> na Primary Assembly 6640 na scaffold_53 unplaced-scaffold na na JAJGAP010000053.1 <> na Primary Assembly 6399 na scaffold_54 unplaced-scaffold na na JAJGAP010000054.1 <> na Primary Assembly 5395 na scaffold_55 unplaced-scaffold na na JAJGAP010000055.1 <> na Primary Assembly 5235 na scaffold_56 unplaced-scaffold na na JAJGAP010000056.1 <> na Primary Assembly 4908 na scaffold_58 unplaced-scaffold na na JAJGAP010000057.1 <> na Primary Assembly 4264 na scaffold_6 unplaced-scaffold na na JAJGAP010000006.1 <> na Primary Assembly 1585072 na scaffold_61 unplaced-scaffold na na JAJGAP010000058.1 <> na Primary Assembly 4120 na scaffold_7 unplaced-scaffold na na JAJGAP010000007.1 <> na Primary Assembly 1544884 na scaffold_71 unplaced-scaffold na na JAJGAP010000059.1 <> na Primary Assembly 3451 na scaffold_77 unplaced-scaffold na na JAJGAP010000060.1 <> na Primary Assembly 2996 na scaffold_79 unplaced-scaffold na na JAJGAP010000061.1 <> na Primary Assembly 2941 na scaffold_8 unplaced-scaffold na na JAJGAP010000008.1 <> na Primary Assembly 1509751 na scaffold_80 unplaced-scaffold na na JAJGAP010000062.1 <> na Primary Assembly 2921 na scaffold_9 unplaced-scaffold na na JAJGAP010000009.1 <> na Primary Assembly 1483417 na scaffold_91 unplaced-scaffold na na JAJGAP010000063.1 <> na Primary Assembly 2451 na scaffold_92 unplaced-scaffold na na JAJGAP010000064.1 <> na Primary Assembly 2408 na scaffold_94 unplaced-scaffold na na JAJGAP010000065.1 <> na Primary Assembly 2208 na scaffold_96 unplaced-scaffold na na JAJGAP010000066.1 <> na Primary Assembly 2147 na scaffold_97 unplaced-scaffold na na JAJGAP010000067.1 <> na Primary Assembly 2062 na scaffold_99 unplaced-scaffold na na JAJGAP010000068.1 <> na Primary Assembly 2029 na