# Assembly name: SHRSP_T2T # Organism name: Rattus norvegicus (Norway rat) # Infraspecific name: strain=SHRSP/BbbUtx # Sex: male # Taxid: 10116 # BioSample: SAMN24538170 # BioProject: PRJNA793432 # Submitter: Inbred Rat Genome Sequencing Project (UTH/UK/UofL) # Date: 2026-05-20 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAKEKU02 # Assembly method: Verkko v. 2.2 # Expected final version: Yes # Genome coverage: 199.0x # Sequencing technology: Illumina NovaSeq; Oxford Nanopore; PacBio Sequel # GenBank assembly accession: GCA_021556685.2 # ## Assembly-Unit names: ## Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chr01 assembled-molecule 1 Chromosome CM038647.2 <> na Primary Assembly 273974617 na chr02 assembled-molecule 2 Chromosome CM038648.2 <> na Primary Assembly 251298693 na chr03 assembled-molecule 3 Chromosome CM038649.2 <> na Primary Assembly 169854131 na chr04 assembled-molecule 4 Chromosome CM038650.2 <> na Primary Assembly 184839043 na chr05 assembled-molecule 5 Chromosome CM038651.2 <> na Primary Assembly 173011413 na chr06 assembled-molecule 6 Chromosome CM038652.2 <> na Primary Assembly 146793982 na chr07 assembled-molecule 7 Chromosome CM038653.2 <> na Primary Assembly 144522229 na chr08 assembled-molecule 8 Chromosome CM038654.2 <> na Primary Assembly 131669355 na chr09 assembled-molecule 9 Chromosome CM038655.2 <> na Primary Assembly 129549291 na chr10 assembled-molecule 10 Chromosome CM038656.2 <> na Primary Assembly 113562567 na chr11 assembled-molecule 11 Chromosome CM038657.2 <> na Primary Assembly 99926075 na chr12 assembled-molecule 12 Chromosome CM038658.2 <> na Primary Assembly 53701673 na chr13 assembled-molecule 13 Chromosome CM038659.2 <> na Primary Assembly 109399695 na chr14 assembled-molecule 14 Chromosome CM038660.2 <> na Primary Assembly 109260687 na chr15 assembled-molecule 15 Chromosome CM038661.2 <> na Primary Assembly 107424553 na chr16 assembled-molecule 16 Chromosome CM038662.2 <> na Primary Assembly 92830114 na chr17 assembled-molecule 17 Chromosome CM038663.2 <> na Primary Assembly 94106407 na chr18 assembled-molecule 18 Chromosome CM038664.2 <> na Primary Assembly 85849073 na chr19 assembled-molecule 19 Chromosome CM038665.2 <> na Primary Assembly 72640497 na chr20 assembled-molecule 20 Chromosome CM038666.2 <> na Primary Assembly 57885825 na chrX assembled-molecule X Chromosome CM038667.2 <> na Primary Assembly 162183458 na chrY assembled-molecule Y Chromosome CM038668.2 <> na Primary Assembly 77331694 na haplotype1-0000012 unplaced-scaffold na na JAKEKU020000023.1 <> na Primary Assembly 160679 na haplotype1-0000013 unplaced-scaffold na na JAKEKU020000024.1 <> na Primary Assembly 12657 na haplotype1-0000014 unplaced-scaffold na na JAKEKU020000025.1 <> na Primary Assembly 14151 na haplotype1-0000016 unplaced-scaffold na na JAKEKU020000026.1 <> na Primary Assembly 738481 na haplotype1-0000017 unplaced-scaffold na na JAKEKU020000027.1 <> na Primary Assembly 743331 na haplotype1-0000018 unplaced-scaffold na na JAKEKU020000028.1 <> na Primary Assembly 34590 na haplotype1-0000019 unplaced-scaffold na na JAKEKU020000029.1 <> na Primary Assembly 671389 na haplotype1-0000020 unplaced-scaffold na na JAKEKU020000030.1 <> na Primary Assembly 252034 na haplotype2-0000026 unplaced-scaffold na na JAKEKU020000031.1 <> na Primary Assembly 1294759 na haplotype2-0000033 unplaced-scaffold na na JAKEKU020000032.1 <> na Primary Assembly 156408 na unassigned-0000034 unplaced-scaffold na na JAKEKU020000033.1 <> na Primary Assembly 39471 na unassigned-0000035 unplaced-scaffold na na JAKEKU020000034.1 <> na Primary Assembly 45031 na unassigned-0000036 unplaced-scaffold na na JAKEKU020000035.1 <> na Primary Assembly 34750 na unassigned-0000037 unplaced-scaffold na na JAKEKU020000036.1 <> na Primary Assembly 34390 na unassigned-0000038 unplaced-scaffold na na JAKEKU020000037.1 <> na Primary Assembly 39431 na unassigned-0000039 unplaced-scaffold na na JAKEKU020000038.1 <> na Primary Assembly 68646 na unassigned-0000040 unplaced-scaffold na na JAKEKU020000039.1 <> na Primary Assembly 53826 na unassigned-0000041 unplaced-scaffold na na JAKEKU020000040.1 <> na Primary Assembly 53829 na unassigned-0000042 unplaced-scaffold na na JAKEKU020000041.1 <> na Primary Assembly 21721 na unassigned-0000047 unplaced-scaffold na na JAKEKU020000042.1 <> na Primary Assembly 250812 na unassigned-0000050 unplaced-scaffold na na JAKEKU020000043.1 <> na Primary Assembly 105772 na unassigned-0000051 unplaced-scaffold na na JAKEKU020000044.1 <> na Primary Assembly 17221 na unassigned-0000052 unplaced-scaffold na na JAKEKU020000045.1 <> na Primary Assembly 12206 na unassigned-0000060 unplaced-scaffold na na JAKEKU020000046.1 <> na Primary Assembly 36512 na unassigned-0000061 unplaced-scaffold na na JAKEKU020000047.1 <> na Primary Assembly 34649 na unassigned-0000062 unplaced-scaffold na na JAKEKU020000048.1 <> na Primary Assembly 28640 na unassigned-0000063 unplaced-scaffold na na JAKEKU020000049.1 <> na Primary Assembly 255429 na unassigned-0000064 unplaced-scaffold na na JAKEKU020000050.1 <> na Primary Assembly 36393 na unassigned-0000065 unplaced-scaffold na na JAKEKU020000051.1 <> na Primary Assembly 80694 na unassigned-0000066 unplaced-scaffold na na JAKEKU020000052.1 <> na Primary Assembly 31002 na unassigned-0000073 unplaced-scaffold na na JAKEKU020000053.1 <> na Primary Assembly 14278 na unassigned-0000075 unplaced-scaffold na na JAKEKU020000054.1 <> na Primary Assembly 33943 na unassigned-0000076 unplaced-scaffold na na JAKEKU020000055.1 <> na Primary Assembly 57557 na unassigned-0000077 unplaced-scaffold na na JAKEKU020000056.1 <> na Primary Assembly 57557 na unassigned-0000078 unplaced-scaffold na na JAKEKU020000057.1 <> na Primary Assembly 44772 na unassigned-0000079 unplaced-scaffold na na JAKEKU020000058.1 <> na Primary Assembly 56673 na unassigned-0000080 unplaced-scaffold na na JAKEKU020000059.1 <> na Primary Assembly 44748 na unassigned-0000081 unplaced-scaffold na na JAKEKU020000060.1 <> na Primary Assembly 44767 na unassigned-0000082 unplaced-scaffold na na JAKEKU020000061.1 <> na Primary Assembly 36618 na unassigned-0000083 unplaced-scaffold na na JAKEKU020000062.1 <> na Primary Assembly 57150 na unassigned-0000084 unplaced-scaffold na na JAKEKU020000063.1 <> na Primary Assembly 57029 na unassigned-0000085 unplaced-scaffold na na JAKEKU020000064.1 <> na Primary Assembly 26361 na unassigned-0000086 unplaced-scaffold na na JAKEKU020000065.1 <> na Primary Assembly 31965 na unassigned-0000087 unplaced-scaffold na na JAKEKU020000066.1 <> na Primary Assembly 35010 na unassigned-0000088 unplaced-scaffold na na JAKEKU020000067.1 <> na Primary Assembly 37526 na unassigned-0000089 unplaced-scaffold na na JAKEKU020000068.1 <> na Primary Assembly 29382 na unassigned-0000090 unplaced-scaffold na na JAKEKU020000069.1 <> na Primary Assembly 24772 na unassigned-0000091 unplaced-scaffold na na JAKEKU020000070.1 <> na Primary Assembly 43092 na unassigned-0000092 unplaced-scaffold na na JAKEKU020000071.1 <> na Primary Assembly 56132 na unassigned-0000093 unplaced-scaffold na na JAKEKU020000072.1 <> na Primary Assembly 39775 na unassigned-0000094 unplaced-scaffold na na JAKEKU020000073.1 <> na Primary Assembly 13457 na unassigned-0000095 unplaced-scaffold na na JAKEKU020000074.1 <> na Primary Assembly 19842 na unassigned-0000098 unplaced-scaffold na na JAKEKU020000075.1 <> na Primary Assembly 51652 na unassigned-0000109 unplaced-scaffold na na JAKEKU020000076.1 <> na Primary Assembly 65132 na unassigned-0000110 unplaced-scaffold na na JAKEKU020000077.1 <> na Primary Assembly 557240 na unassigned-0000111 unplaced-scaffold na na JAKEKU020000078.1 <> na Primary Assembly 213248 na unassigned-0000112 unplaced-scaffold na na JAKEKU020000079.1 <> na Primary Assembly 321347 na unassigned-0000113 unplaced-scaffold na na JAKEKU020000080.1 <> na Primary Assembly 310321 na unassigned-0000114 unplaced-scaffold na na JAKEKU020000081.1 <> na Primary Assembly 143707 na unassigned-0000115 unplaced-scaffold na na JAKEKU020000082.1 <> na Primary Assembly 464117 na unassigned-0000116 unplaced-scaffold na na JAKEKU020000083.1 <> na Primary Assembly 375210 na unassigned-0000117 unplaced-scaffold na na JAKEKU020000084.1 <> na Primary Assembly 25320 na unassigned-0000118 unplaced-scaffold na na JAKEKU020000085.1 <> na Primary Assembly 24675 na unassigned-0000119 unplaced-scaffold na na JAKEKU020000086.1 <> na Primary Assembly 19256 na unassigned-0000120 unplaced-scaffold na na JAKEKU020000087.1 <> na Primary Assembly 29532 na unassigned-0000121 unplaced-scaffold na na JAKEKU020000088.1 <> na Primary Assembly 30246 na unassigned-0000122 unplaced-scaffold na na JAKEKU020000089.1 <> na Primary Assembly 34452 na unassigned-0000123 unplaced-scaffold na na JAKEKU020000090.1 <> na Primary Assembly 29469 na unassigned-0000124 unplaced-scaffold na na JAKEKU020000091.1 <> na Primary Assembly 27552 na unassigned-0000125 unplaced-scaffold na na JAKEKU020000092.1 <> na Primary Assembly 31298 na unassigned-0000126 unplaced-scaffold na na JAKEKU020000093.1 <> na Primary Assembly 26816 na unassigned-0000127 unplaced-scaffold na na JAKEKU020000094.1 <> na Primary Assembly 21306 na unassigned-0000128 unplaced-scaffold na na JAKEKU020000095.1 <> na Primary Assembly 52561 na unassigned-0000129 unplaced-scaffold na na JAKEKU020000096.1 <> na Primary Assembly 33043 na unassigned-0000130 unplaced-scaffold na na JAKEKU020000097.1 <> na Primary Assembly 19879 na unassigned-0000131 unplaced-scaffold na na JAKEKU020000098.1 <> na Primary Assembly 21909 na unassigned-0000132 unplaced-scaffold na na JAKEKU020000099.1 <> na Primary Assembly 21406 na unassigned-0000133 unplaced-scaffold na na JAKEKU020000100.1 <> na Primary Assembly 22213 na unassigned-0000134 unplaced-scaffold na na JAKEKU020000101.1 <> na Primary Assembly 18244 na unassigned-0000135 unplaced-scaffold na na JAKEKU020000102.1 <> na Primary Assembly 21653 na unassigned-0000136 unplaced-scaffold na na JAKEKU020000103.1 <> na Primary Assembly 26119 na unassigned-0000137 unplaced-scaffold na na JAKEKU020000104.1 <> na Primary Assembly 62169 na unassigned-0000138 unplaced-scaffold na na JAKEKU020000105.1 <> na Primary Assembly 55862 na unassigned-0000139 unplaced-scaffold na na JAKEKU020000106.1 <> na Primary Assembly 62167 na unassigned-0000140 unplaced-scaffold na na JAKEKU020000107.1 <> na Primary Assembly 39074 na unassigned-0000141 unplaced-scaffold na na JAKEKU020000108.1 <> na Primary Assembly 68264 na unassigned-0000142 unplaced-scaffold na na JAKEKU020000109.1 <> na Primary Assembly 61287 na unassigned-0000143 unplaced-scaffold na na JAKEKU020000110.1 <> na Primary Assembly 49305 na unassigned-0000144 unplaced-scaffold na na JAKEKU020000111.1 <> na Primary Assembly 118225 na unassigned-0000145 unplaced-scaffold na na JAKEKU020000112.1 <> na Primary Assembly 23725 na unassigned-0000146 unplaced-scaffold na na JAKEKU020000113.1 <> na Primary Assembly 12002 na unassigned-0000147 unplaced-scaffold na na JAKEKU020000114.1 <> na Primary Assembly 32722 na unassigned-0000148 unplaced-scaffold na na JAKEKU020000115.1 <> na Primary Assembly 57812 na unassigned-0000149 unplaced-scaffold na na JAKEKU020000116.1 <> na Primary Assembly 63488 na unassigned-0000150 unplaced-scaffold na na JAKEKU020000117.1 <> na Primary Assembly 101275 na unassigned-0000151 unplaced-scaffold na na JAKEKU020000118.1 <> na Primary Assembly 170080 na unassigned-0000152 unplaced-scaffold na na JAKEKU020000119.1 <> na Primary Assembly 35328 na unassigned-0000153 unplaced-scaffold na na JAKEKU020000120.1 <> na Primary Assembly 82493 na unassigned-0000154 unplaced-scaffold na na JAKEKU020000121.1 <> na Primary Assembly 55461 na unassigned-0000155 unplaced-scaffold na na JAKEKU020000122.1 <> na Primary Assembly 55466 na unassigned-0000156 unplaced-scaffold na na JAKEKU020000123.1 <> na Primary Assembly 45185 na unassigned-0000157 unplaced-scaffold na na JAKEKU020000124.1 <> na Primary Assembly 45562 na unassigned-0000158 unplaced-scaffold na na JAKEKU020000125.1 <> na Primary Assembly 38262 na unassigned-0000159 unplaced-scaffold na na JAKEKU020000126.1 <> na Primary Assembly 99868 na unassigned-0000160 unplaced-scaffold na na JAKEKU020000127.1 <> na Primary Assembly 31113 na unassigned-0000161 unplaced-scaffold na na JAKEKU020000128.1 <> na Primary Assembly 64674 na unassigned-0000162 unplaced-scaffold na na JAKEKU020000129.1 <> na Primary Assembly 17997 na unassigned-0000163 unplaced-scaffold na na JAKEKU020000130.1 <> na Primary Assembly 71061 na unassigned-0000166 unplaced-scaffold na na JAKEKU020000131.1 <> na Primary Assembly 21203 na unassigned-0000167 unplaced-scaffold na na JAKEKU020000132.1 <> na Primary Assembly 15413 na unassigned-0000168 unplaced-scaffold na na JAKEKU020000133.1 <> na Primary Assembly 24638 na unassigned-0000170 unplaced-scaffold na na JAKEKU020000134.1 <> na Primary Assembly 12994 na unassigned-0000171 unplaced-scaffold na na JAKEKU020000135.1 <> na Primary Assembly 25317 na unassigned-0000172 unplaced-scaffold na na JAKEKU020000136.1 <> na Primary Assembly 37862 na unassigned-0000173 unplaced-scaffold na na JAKEKU020000137.1 <> na Primary Assembly 29076 na unassigned-0000174 unplaced-scaffold na na JAKEKU020000138.1 <> na Primary Assembly 34622 na unassigned-0000175 unplaced-scaffold na na JAKEKU020000139.1 <> na Primary Assembly 25874 na unassigned-0000176 unplaced-scaffold na na JAKEKU020000140.1 <> na Primary Assembly 35106 na unassigned-0000177 unplaced-scaffold na na JAKEKU020000141.1 <> na Primary Assembly 17304 na unassigned-0000179 unplaced-scaffold na na JAKEKU020000142.1 <> na Primary Assembly 56067 na unassigned-0000180 unplaced-scaffold na na JAKEKU020000143.1 <> na Primary Assembly 59942 na unassigned-0000181 unplaced-scaffold na na JAKEKU020000144.1 <> na Primary Assembly 72237 na unassigned-0000182 unplaced-scaffold na na JAKEKU020000145.1 <> na Primary Assembly 69421 na unassigned-0000183 unplaced-scaffold na na JAKEKU020000146.1 <> na Primary Assembly 44334 na unassigned-0000184 unplaced-scaffold na na JAKEKU020000147.1 <> na Primary Assembly 49848 na unassigned-0000185 unplaced-scaffold na na JAKEKU020000148.1 <> na Primary Assembly 30718 na unassigned-0000186 unplaced-scaffold na na JAKEKU020000149.1 <> na Primary Assembly 46487 na unassigned-0000187 unplaced-scaffold na na JAKEKU020000150.1 <> na Primary Assembly 47195 na unassigned-0000188 unplaced-scaffold na na JAKEKU020000151.1 <> na Primary Assembly 83958 na unassigned-0000189 unplaced-scaffold na na JAKEKU020000152.1 <> na Primary Assembly 84091 na unassigned-0000190 unplaced-scaffold na na JAKEKU020000153.1 <> na Primary Assembly 42858 na unassigned-0000191 unplaced-scaffold na na JAKEKU020000154.1 <> na Primary Assembly 65267 na unassigned-0000192 unplaced-scaffold na na JAKEKU020000155.1 <> na Primary Assembly 43454 na unassigned-0000193 unplaced-scaffold na na JAKEKU020000156.1 <> na Primary Assembly 44792 na unassigned-0000194 unplaced-scaffold na na JAKEKU020000157.1 <> na Primary Assembly 65265 na unassigned-0000195 unplaced-scaffold na na JAKEKU020000158.1 <> na Primary Assembly 46789 na unassigned-0000196 unplaced-scaffold na na JAKEKU020000159.1 <> na Primary Assembly 20591 na unassigned-0000197 unplaced-scaffold na na JAKEKU020000160.1 <> na Primary Assembly 26170 na unassigned-0000198 unplaced-scaffold na na JAKEKU020000161.1 <> na Primary Assembly 68375 na unassigned-0000199 unplaced-scaffold na na JAKEKU020000162.1 <> na Primary Assembly 27192 na unassigned-0000200 unplaced-scaffold na na JAKEKU020000163.1 <> na Primary Assembly 64297 na unassigned-0000201 unplaced-scaffold na na JAKEKU020000164.1 <> na Primary Assembly 64301 na unassigned-0000202 unplaced-scaffold na na JAKEKU020000165.1 <> na Primary Assembly 49638 na unassigned-0000203 unplaced-scaffold na na JAKEKU020000166.1 <> na Primary Assembly 48248 na unassigned-0000204 unplaced-scaffold na na JAKEKU020000167.1 <> na Primary Assembly 53136 na unassigned-0000205 unplaced-scaffold na na JAKEKU020000168.1 <> na Primary Assembly 38401 na unassigned-0000206 unplaced-scaffold na na JAKEKU020000169.1 <> na Primary Assembly 68902 na unassigned-0000207 unplaced-scaffold na na JAKEKU020000170.1 <> na Primary Assembly 38204 na unassigned-0000208 unplaced-scaffold na na JAKEKU020000171.1 <> na Primary Assembly 50771 na unassigned-0000209 unplaced-scaffold na na JAKEKU020000172.1 <> na Primary Assembly 73504 na unassigned-0000210 unplaced-scaffold na na JAKEKU020000173.1 <> na Primary Assembly 113200 na unassigned-0000211 unplaced-scaffold na na JAKEKU020000174.1 <> na Primary Assembly 67467 na unassigned-0000212 unplaced-scaffold na na JAKEKU020000175.1 <> na Primary Assembly 3453 na unassigned-0000220 unplaced-scaffold na na JAKEKU020000176.1 <> na Primary Assembly 214425 na unassigned-0000221 unplaced-scaffold na na JAKEKU020000177.1 <> na Primary Assembly 22669 na unassigned-0000222 unplaced-scaffold na na JAKEKU020000178.1 <> na Primary Assembly 11144 na unassigned-0000223 unplaced-scaffold na na JAKEKU020000179.1 <> na Primary Assembly 12844 na unassigned-0000224 unplaced-scaffold na na JAKEKU020000180.1 <> na Primary Assembly 34459 na unassigned-0000225 unplaced-scaffold na na JAKEKU020000181.1 <> na Primary Assembly 25485 na unassigned-0000226 unplaced-scaffold na na JAKEKU020000182.1 <> na Primary Assembly 62402 na unassigned-0000227 unplaced-scaffold na na JAKEKU020000183.1 <> na Primary Assembly 59955 na unassigned-0000228 unplaced-scaffold na na JAKEKU020000184.1 <> na Primary Assembly 53054 na unassigned-0000229 unplaced-scaffold na na JAKEKU020000185.1 <> na Primary Assembly 45122 na unassigned-0000233 unplaced-scaffold na na JAKEKU020000186.1 <> na Primary Assembly 18641 na unassigned-0000234 unplaced-scaffold na na JAKEKU020000187.1 <> na Primary Assembly 56189 na unassigned-0000235 unplaced-scaffold na na JAKEKU020000188.1 <> na Primary Assembly 54542 na unassigned-0000236 unplaced-scaffold na na JAKEKU020000189.1 <> na Primary Assembly 36695 na unassigned-0000237 unplaced-scaffold na na JAKEKU020000190.1 <> na Primary Assembly 38219 na unassigned-0000238 unplaced-scaffold na na JAKEKU020000191.1 <> na Primary Assembly 51934 na unassigned-0000239 unplaced-scaffold na na JAKEKU020000192.1 <> na Primary Assembly 43891 na