# Assembly name: fSemPul1.0.p # Organism name: Semicossyphus pulcher (bony fishes) # Isolate: SPU_LCO1_2020_fin # Sex: female # Taxid: 241346 # BioSample: SAMN25656429 # BioProject: PRJNA807366 # Submitter: UCLA # Date: 2022-03-29 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JAKSZQ01 # Assembly method: HiFiasm v. 0.16.1-r375; purge_dups v. 1.2.6; SALSA2 v. 2 # Expected final version: yes # Genome coverage: 54x # Sequencing technology: PacBio Sequel IIe; Dovetails OmniC; Illumina NovaSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_022749685.1 # Linked assembly: GCA_022749735.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_022749705.1 Primary Assembly ## GCA_022749715.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SCAF_1 unplaced-scaffold na na JAKSZQ010000001.1 <> na Primary Assembly 38528027 na SCAF_2 unplaced-scaffold na na JAKSZQ010000002.1 <> na Primary Assembly 36602176 na SCAF_3 unplaced-scaffold na na JAKSZQ010000003.1 <> na Primary Assembly 36283219 na SCAF_4 unplaced-scaffold na na JAKSZQ010000004.1 <> na Primary Assembly 34840487 na SCAF_5 unplaced-scaffold na na JAKSZQ010000005.1 <> na Primary Assembly 33891510 na SCAF_6 unplaced-scaffold na na JAKSZQ010000006.1 <> na Primary Assembly 33721506 na SCAF_7 unplaced-scaffold na na JAKSZQ010000007.1 <> na Primary Assembly 33537147 na SCAF_8 unplaced-scaffold na na JAKSZQ010000008.1 <> na Primary Assembly 33392966 na SCAF_9 unplaced-scaffold na na JAKSZQ010000009.1 <> na Primary Assembly 32559948 na SCAF_10 unplaced-scaffold na na JAKSZQ010000010.1 <> na Primary Assembly 32531490 na SCAF_11 unplaced-scaffold na na JAKSZQ010000011.1 <> na Primary Assembly 32417510 na SCAF_12 unplaced-scaffold na na JAKSZQ010000012.1 <> na Primary Assembly 32091781 na SCAF_13 unplaced-scaffold na na JAKSZQ010000013.1 <> na Primary Assembly 31998530 na SCAF_14 unplaced-scaffold na na JAKSZQ010000014.1 <> na Primary Assembly 31948211 na SCAF_15 unplaced-scaffold na na JAKSZQ010000015.1 <> na Primary Assembly 30000548 na SCAF_16 unplaced-scaffold na na JAKSZQ010000016.1 <> na Primary Assembly 29828419 na SCAF_17 unplaced-scaffold na na JAKSZQ010000017.1 <> na Primary Assembly 29637429 na SCAF_18 unplaced-scaffold na na JAKSZQ010000018.1 <> na Primary Assembly 27168457 na SCAF_19 unplaced-scaffold na na JAKSZQ010000019.1 <> na Primary Assembly 25279740 na SCAF_20 unplaced-scaffold na na JAKSZQ010000020.1 <> na Primary Assembly 24233147 na SCAF_21 unplaced-scaffold na na JAKSZQ010000021.1 <> na Primary Assembly 23764253 na SCAF_22 unplaced-scaffold na na JAKSZQ010000022.1 <> na Primary Assembly 22229017 na SCAF_23 unplaced-scaffold na na JAKSZQ010000023.1 <> na Primary Assembly 17646864 na SCAF_24 unplaced-scaffold na na JAKSZQ010000024.1 <> na Primary Assembly 16386055 na SCAF_25 unplaced-scaffold na na JAKSZQ010000025.1 <> na Primary Assembly 11372374 na SCAF_26 unplaced-scaffold na na JAKSZQ010000026.1 <> na Primary Assembly 11055725 na SCAF_27 unplaced-scaffold na na JAKSZQ010000027.1 <> na Primary Assembly 8365613 na SCAF_28 unplaced-scaffold na na JAKSZQ010000028.1 <> na Primary Assembly 7742488 na SCAF_29 unplaced-scaffold na na JAKSZQ010000029.1 <> na Primary Assembly 2992203 na SCAF_30 unplaced-scaffold na na JAKSZQ010000030.1 <> na Primary Assembly 2267851 na SCAF_31 unplaced-scaffold na na JAKSZQ010000031.1 <> na Primary Assembly 1560603 na SCAF_32 unplaced-scaffold na na JAKSZQ010000032.1 <> na Primary Assembly 1288377 na SCAF_33 unplaced-scaffold na na JAKSZQ010000033.1 <> na Primary Assembly 1197971 na SCAF_34 unplaced-scaffold na na JAKSZQ010000034.1 <> na Primary Assembly 1183020 na SCAF_35 unplaced-scaffold na na JAKSZQ010000035.1 <> na Primary Assembly 1180285 na SCAF_36 unplaced-scaffold na na JAKSZQ010000036.1 <> na Primary Assembly 982460 na SCAF_37 unplaced-scaffold na na JAKSZQ010000037.1 <> na Primary Assembly 929549 na SCAF_38 unplaced-scaffold na na JAKSZQ010000038.1 <> na Primary Assembly 892149 na SCAF_39 unplaced-scaffold na na JAKSZQ010000039.1 <> na Primary Assembly 891135 na SCAF_40 unplaced-scaffold na na JAKSZQ010000040.1 <> na Primary Assembly 860441 na SCAF_41 unplaced-scaffold na na JAKSZQ010000041.1 <> na Primary Assembly 732031 na SCAF_42 unplaced-scaffold na na JAKSZQ010000042.1 <> na Primary Assembly 694949 na SCAF_43 unplaced-scaffold na na JAKSZQ010000043.1 <> na Primary Assembly 689390 na SCAF_44 unplaced-scaffold na na JAKSZQ010000044.1 <> na Primary Assembly 686269 na SCAF_45 unplaced-scaffold na na JAKSZQ010000045.1 <> na Primary Assembly 624530 na SCAF_46 unplaced-scaffold na na JAKSZQ010000046.1 <> na Primary Assembly 620577 na SCAF_47 unplaced-scaffold na na JAKSZQ010000047.1 <> na Primary Assembly 615775 na SCAF_48 unplaced-scaffold na na JAKSZQ010000048.1 <> na Primary Assembly 593992 na SCAF_49 unplaced-scaffold na na JAKSZQ010000049.1 <> na Primary Assembly 571047 na SCAF_50 unplaced-scaffold na na JAKSZQ010000050.1 <> na Primary Assembly 561889 na SCAF_51 unplaced-scaffold na na JAKSZQ010000051.1 <> na Primary Assembly 552899 na SCAF_52 unplaced-scaffold na na JAKSZQ010000052.1 <> na Primary Assembly 521062 na SCAF_53 unplaced-scaffold na na JAKSZQ010000053.1 <> na Primary Assembly 456745 na SCAF_54 unplaced-scaffold na na JAKSZQ010000054.1 <> na Primary Assembly 452685 na SCAF_55 unplaced-scaffold na na JAKSZQ010000055.1 <> na Primary Assembly 452679 na SCAF_56 unplaced-scaffold na na JAKSZQ010000056.1 <> na Primary Assembly 452387 na SCAF_57 unplaced-scaffold na na JAKSZQ010000057.1 <> na Primary Assembly 451049 na SCAF_58 unplaced-scaffold na na JAKSZQ010000058.1 <> na Primary Assembly 407059 na SCAF_59 unplaced-scaffold na na JAKSZQ010000059.1 <> na Primary Assembly 405128 na SCAF_60 unplaced-scaffold na na JAKSZQ010000060.1 <> na Primary Assembly 350846 na SCAF_61 unplaced-scaffold na na JAKSZQ010000061.1 <> na Primary Assembly 333694 na SCAF_62 unplaced-scaffold na na JAKSZQ010000062.1 <> na Primary Assembly 287216 na SCAF_63 unplaced-scaffold na na JAKSZQ010000063.1 <> na Primary Assembly 255394 na SCAF_64 unplaced-scaffold na na JAKSZQ010000064.1 <> na Primary Assembly 254692 na SCAF_65 unplaced-scaffold na na JAKSZQ010000065.1 <> na Primary Assembly 250317 na SCAF_66 unplaced-scaffold na na JAKSZQ010000066.1 <> na Primary Assembly 237593 na SCAF_67 unplaced-scaffold na na JAKSZQ010000067.1 <> na Primary Assembly 207168 na SCAF_68 unplaced-scaffold na na JAKSZQ010000068.1 <> na Primary Assembly 200967 na SCAF_69 unplaced-scaffold na na JAKSZQ010000069.1 <> na Primary Assembly 190519 na SCAF_70 unplaced-scaffold na na JAKSZQ010000070.1 <> na Primary Assembly 188919 na SCAF_71 unplaced-scaffold na na JAKSZQ010000071.1 <> na Primary Assembly 174209 na SCAF_72 unplaced-scaffold na na JAKSZQ010000072.1 <> na Primary Assembly 153443 na SCAF_73 unplaced-scaffold na na JAKSZQ010000073.1 <> na Primary Assembly 141438 na SCAF_74 unplaced-scaffold na na JAKSZQ010000074.1 <> na Primary Assembly 129303 na SCAF_75 unplaced-scaffold na na JAKSZQ010000075.1 <> na Primary Assembly 121866 na SCAF_76 unplaced-scaffold na na JAKSZQ010000076.1 <> na Primary Assembly 114348 na SCAF_77 unplaced-scaffold na na JAKSZQ010000077.1 <> na Primary Assembly 112584 na SCAF_78 unplaced-scaffold na na JAKSZQ010000078.1 <> na Primary Assembly 106642 na SCAF_79 unplaced-scaffold na na JAKSZQ010000079.1 <> na Primary Assembly 105311 na SCAF_80 unplaced-scaffold na na JAKSZQ010000080.1 <> na Primary Assembly 104565 na SCAF_81 unplaced-scaffold na na JAKSZQ010000081.1 <> na Primary Assembly 98784 na SCAF_82 unplaced-scaffold na na JAKSZQ010000082.1 <> na Primary Assembly 95340 na SCAF_83 unplaced-scaffold na na JAKSZQ010000083.1 <> na Primary Assembly 93274 na SCAF_84 unplaced-scaffold na na JAKSZQ010000084.1 <> na Primary Assembly 90583 na SCAF_85 unplaced-scaffold na na JAKSZQ010000085.1 <> na Primary Assembly 80239 na SCAF_86 unplaced-scaffold na na JAKSZQ010000086.1 <> na Primary Assembly 79244 na SCAF_87 unplaced-scaffold na na JAKSZQ010000087.1 <> na Primary Assembly 79073 na SCAF_88 unplaced-scaffold na na JAKSZQ010000088.1 <> na Primary Assembly 76749 na SCAF_89 unplaced-scaffold na na JAKSZQ010000089.1 <> na Primary Assembly 73320 na SCAF_90 unplaced-scaffold na na JAKSZQ010000090.1 <> na Primary Assembly 72076 na SCAF_91 unplaced-scaffold na na JAKSZQ010000091.1 <> na Primary Assembly 70926 na SCAF_92 unplaced-scaffold na na JAKSZQ010000092.1 <> na Primary Assembly 65265 na SCAF_93 unplaced-scaffold na na JAKSZQ010000093.1 <> na Primary Assembly 65205 na SCAF_94 unplaced-scaffold na na JAKSZQ010000094.1 <> na Primary Assembly 63234 na SCAF_95 unplaced-scaffold na na JAKSZQ010000095.1 <> na Primary Assembly 63128 na SCAF_96 unplaced-scaffold na na JAKSZQ010000096.1 <> na Primary Assembly 59808 na SCAF_97 unplaced-scaffold na na JAKSZQ010000097.1 <> na Primary Assembly 59531 na SCAF_98 unplaced-scaffold na na JAKSZQ010000098.1 <> na Primary Assembly 57535 na SCAF_99 unplaced-scaffold na na JAKSZQ010000099.1 <> na Primary Assembly 57396 na SCAF_100 unplaced-scaffold na na JAKSZQ010000100.1 <> na Primary Assembly 56885 na SCAF_101 unplaced-scaffold na na JAKSZQ010000101.1 <> na Primary Assembly 56741 na SCAF_102 unplaced-scaffold na na JAKSZQ010000102.1 <> na Primary Assembly 55103 na SCAF_103 unplaced-scaffold na na JAKSZQ010000103.1 <> na Primary Assembly 53999 na SCAF_104 unplaced-scaffold na na JAKSZQ010000104.1 <> na Primary Assembly 52477 na SCAF_105 unplaced-scaffold na na JAKSZQ010000105.1 <> na Primary Assembly 51893 na SCAF_106 unplaced-scaffold na na JAKSZQ010000106.1 <> na Primary Assembly 51499 na SCAF_107 unplaced-scaffold na na JAKSZQ010000107.1 <> na Primary Assembly 50945 na SCAF_108 unplaced-scaffold na na JAKSZQ010000108.1 <> na Primary Assembly 50469 na SCAF_109 unplaced-scaffold na na JAKSZQ010000109.1 <> na Primary Assembly 49620 na SCAF_110 unplaced-scaffold na na JAKSZQ010000110.1 <> na Primary Assembly 49082 na SCAF_111 unplaced-scaffold na na JAKSZQ010000111.1 <> na Primary Assembly 48778 na SCAF_112 unplaced-scaffold na na JAKSZQ010000112.1 <> na Primary Assembly 47772 na SCAF_113 unplaced-scaffold na na JAKSZQ010000113.1 <> na Primary Assembly 47667 na SCAF_114 unplaced-scaffold na na JAKSZQ010000114.1 <> na Primary Assembly 45660 na SCAF_115 unplaced-scaffold na na JAKSZQ010000115.1 <> na Primary Assembly 45558 na SCAF_116 unplaced-scaffold na na JAKSZQ010000116.1 <> na Primary Assembly 45550 na SCAF_117 unplaced-scaffold na na JAKSZQ010000117.1 <> na Primary Assembly 44659 na SCAF_118 unplaced-scaffold na na JAKSZQ010000118.1 <> na Primary Assembly 43660 na SCAF_119 unplaced-scaffold na na JAKSZQ010000119.1 <> na Primary Assembly 43535 na SCAF_120 unplaced-scaffold na na JAKSZQ010000120.1 <> na Primary Assembly 40833 na SCAF_121 unplaced-scaffold na na JAKSZQ010000121.1 <> na Primary Assembly 40637 na SCAF_122 unplaced-scaffold na na JAKSZQ010000122.1 <> na Primary Assembly 40204 na SCAF_123 unplaced-scaffold na na JAKSZQ010000123.1 <> na Primary Assembly 39573 na SCAF_124 unplaced-scaffold na na JAKSZQ010000124.1 <> na Primary Assembly 38941 na SCAF_125 unplaced-scaffold na na JAKSZQ010000125.1 <> na Primary Assembly 38460 na SCAF_126 unplaced-scaffold na na JAKSZQ010000126.1 <> na Primary Assembly 38352 na SCAF_127 unplaced-scaffold na na JAKSZQ010000127.1 <> na Primary Assembly 37279 na SCAF_128 unplaced-scaffold na na JAKSZQ010000128.1 <> na Primary Assembly 36795 na SCAF_129 unplaced-scaffold na na JAKSZQ010000129.1 <> na Primary Assembly 36657 na SCAF_130 unplaced-scaffold na na JAKSZQ010000130.1 <> na Primary Assembly 36513 na SCAF_131 unplaced-scaffold na na JAKSZQ010000131.1 <> na Primary Assembly 36440 na SCAF_132 unplaced-scaffold na na JAKSZQ010000132.1 <> na Primary Assembly 35646 na SCAF_133 unplaced-scaffold na na JAKSZQ010000133.1 <> na Primary Assembly 35638 na SCAF_134 unplaced-scaffold na na JAKSZQ010000134.1 <> na Primary Assembly 35535 na SCAF_135 unplaced-scaffold na na JAKSZQ010000135.1 <> na Primary Assembly 35481 na SCAF_136 unplaced-scaffold na na JAKSZQ010000136.1 <> na Primary Assembly 35163 na SCAF_137 unplaced-scaffold na na JAKSZQ010000137.1 <> na Primary Assembly 34937 na SCAF_138 unplaced-scaffold na na JAKSZQ010000138.1 <> na Primary Assembly 34922 na SCAF_139 unplaced-scaffold na na JAKSZQ010000139.1 <> na Primary Assembly 34906 na SCAF_140 unplaced-scaffold na na JAKSZQ010000140.1 <> na Primary Assembly 34888 na SCAF_141 unplaced-scaffold na na JAKSZQ010000141.1 <> na Primary Assembly 33566 na SCAF_142 unplaced-scaffold na na JAKSZQ010000142.1 <> na Primary Assembly 33021 na SCAF_143 unplaced-scaffold na na JAKSZQ010000143.1 <> na Primary Assembly 32897 na SCAF_144 unplaced-scaffold na na JAKSZQ010000144.1 <> na Primary Assembly 32774 na SCAF_145 unplaced-scaffold na na JAKSZQ010000145.1 <> na Primary Assembly 32756 na SCAF_146 unplaced-scaffold na na JAKSZQ010000146.1 <> na Primary Assembly 32723 na SCAF_147 unplaced-scaffold na na JAKSZQ010000147.1 <> na Primary Assembly 32669 na SCAF_148 unplaced-scaffold na na JAKSZQ010000148.1 <> na Primary Assembly 32596 na SCAF_149 unplaced-scaffold na na JAKSZQ010000149.1 <> na Primary Assembly 32439 na SCAF_150 unplaced-scaffold na na JAKSZQ010000150.1 <> na Primary Assembly 32361 na SCAF_151 unplaced-scaffold na na JAKSZQ010000151.1 <> na Primary Assembly 32360 na SCAF_152 unplaced-scaffold na na JAKSZQ010000152.1 <> na Primary Assembly 32322 na SCAF_153 unplaced-scaffold na na JAKSZQ010000153.1 <> na Primary Assembly 32140 na SCAF_154 unplaced-scaffold na na JAKSZQ010000154.1 <> na Primary Assembly 31605 na SCAF_155 unplaced-scaffold na na JAKSZQ010000155.1 <> na Primary Assembly 30603 na SCAF_156 unplaced-scaffold na na JAKSZQ010000156.1 <> na Primary Assembly 30440 na SCAF_157 unplaced-scaffold na na JAKSZQ010000157.1 <> na Primary Assembly 30009 na SCAF_158 unplaced-scaffold na na JAKSZQ010000158.1 <> na Primary Assembly 29523 na SCAF_159 unplaced-scaffold na na JAKSZQ010000159.1 <> na Primary Assembly 29041 na SCAF_160 unplaced-scaffold na na JAKSZQ010000160.1 <> na Primary Assembly 28907 na SCAF_161 unplaced-scaffold na na JAKSZQ010000161.1 <> na Primary Assembly 28345 na SCAF_162 unplaced-scaffold na na JAKSZQ010000162.1 <> na Primary Assembly 28189 na SCAF_163 unplaced-scaffold na na JAKSZQ010000163.1 <> na Primary Assembly 27988 na SCAF_164 unplaced-scaffold na na JAKSZQ010000164.1 <> na Primary Assembly 27638 na SCAF_165 unplaced-scaffold na na JAKSZQ010000165.1 <> na Primary Assembly 27186 na SCAF_166 unplaced-scaffold na na JAKSZQ010000166.1 <> na Primary Assembly 27073 na SCAF_167 unplaced-scaffold na na JAKSZQ010000167.1 <> na Primary Assembly 26844 na SCAF_168 unplaced-scaffold na na JAKSZQ010000168.1 <> na Primary Assembly 26562 na SCAF_169 unplaced-scaffold na na JAKSZQ010000169.1 <> na Primary Assembly 26203 na SCAF_170 unplaced-scaffold na na JAKSZQ010000170.1 <> na Primary Assembly 25340 na SCAF_171 unplaced-scaffold na na JAKSZQ010000171.1 <> na Primary Assembly 24879 na SCAF_172 unplaced-scaffold na na JAKSZQ010000172.1 <> na Primary Assembly 24792 na SCAF_173 unplaced-scaffold na na JAKSZQ010000173.1 <> na Primary Assembly 24624 na SCAF_174 unplaced-scaffold na na JAKSZQ010000174.1 <> na Primary Assembly 24551 na SCAF_175 unplaced-scaffold na na JAKSZQ010000175.1 <> na Primary Assembly 24413 na SCAF_176 unplaced-scaffold na na JAKSZQ010000176.1 <> na Primary Assembly 22216 na SCAF_177 unplaced-scaffold na na JAKSZQ010000177.1 <> na Primary Assembly 21698 na SCAF_178 unplaced-scaffold na na JAKSZQ010000178.1 <> na Primary Assembly 19214 na mtDNA unlocalized-scaffold MT Mitochondrion JAKSZQ010000179.1 <> na non-nuclear 16548 na