# Assembly name: USDA_CIA_1 # Organism name: Giardia intestinalis (diplomonads) # Isolate: CIA # Taxid: 5741 # BioSample: SAMN24144952 # BioProject: PRJNA789594 # Submitter: United States Department of Agriculture # Date: 2022-04-14 # Assembly type: haploid # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JAJSZJ01 # Assembly method: MaSuRCA v. 4.0.3 # Expected final version: no # Genome coverage: 55x # Sequencing technology: Illumina MiSeq; Oxford Nanopore MinION # GenBank assembly accession: GCA_022985015.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_022985085.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scf7180000000228 unplaced-scaffold na na JAJSZJ010000007.1 <> na Primary Assembly 367831 na scf7180000000229 unplaced-scaffold na na JAJSZJ010000043.1 <> na Primary Assembly 519533 na scf7180000000230 unplaced-scaffold na na JAJSZJ010000080.1 <> na Primary Assembly 623453 na scf7180000000232 unplaced-scaffold na na JAJSZJ010000038.1 <> na Primary Assembly 240249 na scf7180000000233 unplaced-scaffold na na JAJSZJ010000087.1 <> na Primary Assembly 425069 na scf7180000000235 unplaced-scaffold na na JAJSZJ010000012.1 <> na Primary Assembly 51615 na scf7180000000236 unplaced-scaffold na na JAJSZJ010000021.1 <> na Primary Assembly 361820 na scf7180000000237 unplaced-scaffold na na JAJSZJ010000001.1 <> na Primary Assembly 97210 na scf7180000000238 unplaced-scaffold na na JAJSZJ010000005.1 <> na Primary Assembly 274323 na scf7180000000239 unplaced-scaffold na na JAJSZJ010000040.1 <> na Primary Assembly 302085 na scf7180000000240 unplaced-scaffold na na JAJSZJ010000008.1 <> na Primary Assembly 69653 na scf7180000000241 unplaced-scaffold na na JAJSZJ010000042.1 <> na Primary Assembly 108356 na scf7180000000242 unplaced-scaffold na na JAJSZJ010000006.1 <> na Primary Assembly 32800 na scf7180000000243 unplaced-scaffold na na JAJSZJ010000047.1 <> na Primary Assembly 149089 na scf7180000000245 unplaced-scaffold na na JAJSZJ010000035.1 <> na Primary Assembly 644739 na scf7180000000246 unplaced-scaffold na na JAJSZJ010000036.1 <> na Primary Assembly 108835 na scf7180000000248 unplaced-scaffold na na JAJSZJ010000015.1 <> na Primary Assembly 72304 na scf7180000000249 unplaced-scaffold na na JAJSZJ010000010.1 <> na Primary Assembly 183143 na scf7180000000250 unplaced-scaffold na na JAJSZJ010000025.1 <> na Primary Assembly 229474 na scf7180000000251 unplaced-scaffold na na JAJSZJ010000020.1 <> na Primary Assembly 95727 na scf7180000000252 unplaced-scaffold na na JAJSZJ010000019.1 <> na Primary Assembly 127230 na scf7180000000253 unplaced-scaffold na na JAJSZJ010000009.1 <> na Primary Assembly 33639 na scf7180000000255 unplaced-scaffold na na JAJSZJ010000032.1 <> na Primary Assembly 58981 na scf7180000000256 unplaced-scaffold na na JAJSZJ010000045.1 <> na Primary Assembly 50260 na scf7180000000257 unplaced-scaffold na na JAJSZJ010000089.1 <> na Primary Assembly 14856 na scf7180000000258 unplaced-scaffold na na JAJSZJ010000082.1 <> na Primary Assembly 194820 na scf7180000000259 unplaced-scaffold na na JAJSZJ010000024.1 <> na Primary Assembly 67398 na scf7180000000260 unplaced-scaffold na na JAJSZJ010000018.1 <> na Primary Assembly 208986 na scf7180000000261 unplaced-scaffold na na JAJSZJ010000054.1 <> na Primary Assembly 85580 na scf7180000000262 unplaced-scaffold na na JAJSZJ010000067.1 <> na Primary Assembly 141783 na scf7180000000264 unplaced-scaffold na na JAJSZJ010000017.1 <> na Primary Assembly 105744 na scf7180000000265 unplaced-scaffold na na JAJSZJ010000058.1 <> na Primary Assembly 101634 na scf7180000000266 unplaced-scaffold na na JAJSZJ010000003.1 <> na Primary Assembly 48831 na scf7180000000267 unplaced-scaffold na na JAJSZJ010000085.1 <> na Primary Assembly 229732 na scf7180000000268 unplaced-scaffold na na JAJSZJ010000016.1 <> na Primary Assembly 88691 na scf7180000000269 unplaced-scaffold na na JAJSZJ010000069.1 <> na Primary Assembly 44127 na scf7180000000270 unplaced-scaffold na na JAJSZJ010000046.1 <> na Primary Assembly 115274 na scf7180000000271 unplaced-scaffold na na JAJSZJ010000034.1 <> na Primary Assembly 98827 na scf7180000000272 unplaced-scaffold na na JAJSZJ010000070.1 <> na Primary Assembly 56160 na scf7180000000273 unplaced-scaffold na na JAJSZJ010000049.1 <> na Primary Assembly 116816 na scf7180000000274 unplaced-scaffold na na JAJSZJ010000078.1 <> na Primary Assembly 32768 na scf7180000000275 unplaced-scaffold na na JAJSZJ010000002.1 <> na Primary Assembly 73478 na scf7180000000276 unplaced-scaffold na na JAJSZJ010000011.1 <> na Primary Assembly 189708 na scf7180000000277 unplaced-scaffold na na JAJSZJ010000037.1 <> na Primary Assembly 192073 na scf7180000000278 unplaced-scaffold na na JAJSZJ010000055.1 <> na Primary Assembly 84353 na scf7180000000279 unplaced-scaffold na na JAJSZJ010000062.1 <> na Primary Assembly 84559 na scf7180000000280 unplaced-scaffold na na JAJSZJ010000048.1 <> na Primary Assembly 102889 na scf7180000000281 unplaced-scaffold na na JAJSZJ010000056.1 <> na Primary Assembly 12095 na scf7180000000283 unplaced-scaffold na na JAJSZJ010000065.1 <> na Primary Assembly 86001 na scf7180000000284 unplaced-scaffold na na JAJSZJ010000063.1 <> na Primary Assembly 64527 na scf7180000000285 unplaced-scaffold na na JAJSZJ010000073.1 <> na Primary Assembly 149810 na scf7180000000286 unplaced-scaffold na na JAJSZJ010000061.1 <> na Primary Assembly 146159 na scf7180000000287 unplaced-scaffold na na JAJSZJ010000071.1 <> na Primary Assembly 97365 na scf7180000000288 unplaced-scaffold na na JAJSZJ010000088.1 <> na Primary Assembly 83119 na scf7180000000289 unplaced-scaffold na na JAJSZJ010000053.1 <> na Primary Assembly 83493 na scf7180000000290 unplaced-scaffold na na JAJSZJ010000074.1 <> na Primary Assembly 101949 na scf7180000000291 unplaced-scaffold na na JAJSZJ010000083.1 <> na Primary Assembly 145053 na scf7180000000292 unplaced-scaffold na na JAJSZJ010000013.1 <> na Primary Assembly 130674 na scf7180000000293 unplaced-scaffold na na JAJSZJ010000076.1 <> na Primary Assembly 142428 na scf7180000000294 unplaced-scaffold na na JAJSZJ010000072.1 <> na Primary Assembly 63921 na scf7180000000295 unplaced-scaffold na na JAJSZJ010000051.1 <> na Primary Assembly 72237 na scf7180000000296 unplaced-scaffold na na JAJSZJ010000023.1 <> na Primary Assembly 32826 na scf7180000000297 unplaced-scaffold na na JAJSZJ010000026.1 <> na Primary Assembly 11807 na scf7180000000299 unplaced-scaffold na na JAJSZJ010000057.1 <> na Primary Assembly 85522 na scf7180000000300 unplaced-scaffold na na JAJSZJ010000014.1 <> na Primary Assembly 89267 na scf7180000000301 unplaced-scaffold na na JAJSZJ010000081.1 <> na Primary Assembly 82750 na scf7180000000302 unplaced-scaffold na na JAJSZJ010000091.1 <> na Primary Assembly 90337 na scf7180000000303 unplaced-scaffold na na JAJSZJ010000077.1 <> na Primary Assembly 80243 na scf7180000000304 unplaced-scaffold na na JAJSZJ010000060.1 <> na Primary Assembly 95994 na scf7180000000305 unplaced-scaffold na na JAJSZJ010000028.1 <> na Primary Assembly 93380 na scf7180000000306 unplaced-scaffold na na JAJSZJ010000079.1 <> na Primary Assembly 91981 na scf7180000000307 unplaced-scaffold na na JAJSZJ010000064.1 <> na Primary Assembly 55158 na scf7180000000308 unplaced-scaffold na na JAJSZJ010000052.1 <> na Primary Assembly 24924 na scf7180000000309 unplaced-scaffold na na JAJSZJ010000022.1 <> na Primary Assembly 25606 na scf7180000000310 unplaced-scaffold na na JAJSZJ010000075.1 <> na Primary Assembly 52942 na scf7180000000311 unplaced-scaffold na na JAJSZJ010000090.1 <> na Primary Assembly 76247 na scf7180000000312 unplaced-scaffold na na JAJSZJ010000029.1 <> na Primary Assembly 82529 na scf7180000000313 unplaced-scaffold na na JAJSZJ010000041.1 <> na Primary Assembly 70296 na scf7180000000314 unplaced-scaffold na na JAJSZJ010000066.1 <> na Primary Assembly 29507 na scf7180000000315 unplaced-scaffold na na JAJSZJ010000030.1 <> na Primary Assembly 59477 na scf7180000000317 unplaced-scaffold na na JAJSZJ010000068.1 <> na Primary Assembly 40114 na scf7180000000318 unplaced-scaffold na na JAJSZJ010000084.1 <> na Primary Assembly 30036 na scf7180000000319 unplaced-scaffold na na JAJSZJ010000092.1 <> na Primary Assembly 43100 na scf7180000000320 unplaced-scaffold na na JAJSZJ010000031.1 <> na Primary Assembly 49431 na scf7180000000322 unplaced-scaffold na na JAJSZJ010000086.1 <> na Primary Assembly 41477 na scf7180000000323 unplaced-scaffold na na JAJSZJ010000004.1 <> na Primary Assembly 25834 na scf7180000000324 unplaced-scaffold na na JAJSZJ010000033.1 <> na Primary Assembly 40062 na scf7180000000325 unplaced-scaffold na na JAJSZJ010000027.1 <> na Primary Assembly 31423 na scf7180000000326 unplaced-scaffold na na JAJSZJ010000050.1 <> na Primary Assembly 29986 na scf7180000000327 unplaced-scaffold na na JAJSZJ010000044.1 <> na Primary Assembly 17125 na scf7180000000328 unplaced-scaffold na na JAJSZJ010000093.1 <> na Primary Assembly 17939 na scf7180000000329 unplaced-scaffold na na JAJSZJ010000059.1 <> na Primary Assembly 13103 na scf7180000000331 unplaced-scaffold na na JAJSZJ010000039.1 <> na Primary Assembly 7583 na