# Assembly name: bAgeTri1.0.p # Organism name: Agelaius tricolor (tricolored blackbird) # Isolate: 1412-34295 # Sex: female # Taxid: 9191 # BioSample: SAMN25872474 # BioProject: PRJNA810502 # Submitter: UCLA # Date: 2022-04-19 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JALJCS01 # Assembly method: HiFiasm v. 0.16.1-r375; purge_dups v. 1.2.6; SALSA2 v. 2 # Expected final version: yes # Genome coverage: 41x # Sequencing technology: PacBio Sequel II; PacBio Sequel IIe; Dovetails OmniC; Illumina NovaSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_023055355.1 # Linked assembly: GCA_023055385.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_023055365.1 Primary Assembly ## GCA_023055375.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SCAF_1 unplaced-scaffold na na JALJCS010000001.1 <> na Primary Assembly 113901592 na SCAF_2 unplaced-scaffold na na JALJCS010000002.1 <> na Primary Assembly 95477673 na SCAF_3 unplaced-scaffold na na JALJCS010000003.1 <> na Primary Assembly 69861713 na SCAF_4 unplaced-scaffold na na JALJCS010000004.1 <> na Primary Assembly 57692077 na SCAF_5 unplaced-scaffold na na JALJCS010000005.1 <> na Primary Assembly 55779402 na SCAF_6 unplaced-scaffold na na JALJCS010000006.1 <> na Primary Assembly 55655608 na SCAF_7 unplaced-scaffold na na JALJCS010000007.1 <> na Primary Assembly 51436609 na SCAF_8 unplaced-scaffold na na JALJCS010000008.1 <> na Primary Assembly 48798145 na SCAF_9 unplaced-scaffold na na JALJCS010000009.1 <> na Primary Assembly 47739980 na SCAF_10 unplaced-scaffold na na JALJCS010000010.1 <> na Primary Assembly 36502631 na SCAF_11 unplaced-scaffold na na JALJCS010000011.1 <> na Primary Assembly 31168654 na SCAF_12 unplaced-scaffold na na JALJCS010000012.1 <> na Primary Assembly 26514841 na SCAF_13 unplaced-scaffold na na JALJCS010000013.1 <> na Primary Assembly 22601135 na SCAF_14 unplaced-scaffold na na JALJCS010000014.1 <> na Primary Assembly 22209695 na SCAF_15 unplaced-scaffold na na JALJCS010000015.1 <> na Primary Assembly 21951777 na SCAF_16 unplaced-scaffold na na JALJCS010000016.1 <> na Primary Assembly 21675387 na SCAF_17 unplaced-scaffold na na JALJCS010000017.1 <> na Primary Assembly 20562784 na SCAF_18 unplaced-scaffold na na JALJCS010000018.1 <> na Primary Assembly 19061657 na SCAF_19 unplaced-scaffold na na JALJCS010000019.1 <> na Primary Assembly 17359876 na SCAF_20 unplaced-scaffold na na JALJCS010000020.1 <> na Primary Assembly 15080883 na SCAF_21 unplaced-scaffold na na JALJCS010000021.1 <> na Primary Assembly 14783721 na SCAF_22 unplaced-scaffold na na JALJCS010000022.1 <> na Primary Assembly 14694341 na SCAF_23 unplaced-scaffold na na JALJCS010000023.1 <> na Primary Assembly 13862288 na SCAF_24 unplaced-scaffold na na JALJCS010000024.1 <> na Primary Assembly 13244266 na SCAF_25 unplaced-scaffold na na JALJCS010000025.1 <> na Primary Assembly 12782641 na SCAF_26 unplaced-scaffold na na JALJCS010000026.1 <> na Primary Assembly 11909165 na SCAF_27 unplaced-scaffold na na JALJCS010000027.1 <> na Primary Assembly 10776608 na SCAF_28 unplaced-scaffold na na JALJCS010000028.1 <> na Primary Assembly 9321253 na SCAF_29 unplaced-scaffold na na JALJCS010000029.1 <> na Primary Assembly 8833126 na SCAF_30 unplaced-scaffold na na JALJCS010000030.1 <> na Primary Assembly 8051152 na SCAF_31 unplaced-scaffold na na JALJCS010000031.1 <> na Primary Assembly 7304305 na SCAF_32 unplaced-scaffold na na JALJCS010000032.1 <> na Primary Assembly 7200297 na SCAF_33 unplaced-scaffold na na JALJCS010000033.1 <> na Primary Assembly 6964157 na SCAF_34 unplaced-scaffold na na JALJCS010000034.1 <> na Primary Assembly 6793421 na SCAF_35 unplaced-scaffold na na JALJCS010000035.1 <> na Primary Assembly 6699501 na SCAF_36 unplaced-scaffold na na JALJCS010000036.1 <> na Primary Assembly 6666901 na SCAF_37 unplaced-scaffold na na JALJCS010000037.1 <> na Primary Assembly 6334585 na SCAF_38 unplaced-scaffold na na JALJCS010000038.1 <> na Primary Assembly 6122820 na SCAF_39 unplaced-scaffold na na JALJCS010000039.1 <> na Primary Assembly 5798228 na SCAF_40 unplaced-scaffold na na JALJCS010000040.1 <> na Primary Assembly 5127889 na SCAF_41 unplaced-scaffold na na JALJCS010000041.1 <> na Primary Assembly 4574881 na SCAF_42 unplaced-scaffold na na JALJCS010000042.1 <> na Primary Assembly 4239293 na SCAF_43 unplaced-scaffold na na JALJCS010000043.1 <> na Primary Assembly 4066201 na SCAF_44 unplaced-scaffold na na JALJCS010000044.1 <> na Primary Assembly 4062403 na SCAF_45 unplaced-scaffold na na JALJCS010000045.1 <> na Primary Assembly 3982256 na SCAF_46 unplaced-scaffold na na JALJCS010000046.1 <> na Primary Assembly 3779832 na SCAF_47 unplaced-scaffold na na JALJCS010000047.1 <> na Primary Assembly 3392480 na SCAF_48 unplaced-scaffold na na JALJCS010000048.1 <> na Primary Assembly 3374292 na SCAF_49 unplaced-scaffold na na JALJCS010000049.1 <> na Primary Assembly 3216427 na SCAF_50 unplaced-scaffold na na JALJCS010000050.1 <> na Primary Assembly 3033901 na SCAF_51 unplaced-scaffold na na JALJCS010000051.1 <> na Primary Assembly 2879710 na SCAF_52 unplaced-scaffold na na JALJCS010000052.1 <> na Primary Assembly 2851868 na SCAF_53 unplaced-scaffold na na JALJCS010000053.1 <> na Primary Assembly 2848007 na SCAF_54 unplaced-scaffold na na JALJCS010000054.1 <> na Primary Assembly 2631736 na SCAF_55 unplaced-scaffold na na JALJCS010000055.1 <> na Primary Assembly 2362328 na SCAF_56 unplaced-scaffold na na JALJCS010000056.1 <> na Primary Assembly 2357813 na SCAF_57 unplaced-scaffold na na JALJCS010000057.1 <> na Primary Assembly 2305677 na SCAF_58 unplaced-scaffold na na JALJCS010000058.1 <> na Primary Assembly 2172997 na SCAF_59 unplaced-scaffold na na JALJCS010000059.1 <> na Primary Assembly 2054452 na SCAF_60 unplaced-scaffold na na JALJCS010000060.1 <> na Primary Assembly 1960709 na SCAF_61 unplaced-scaffold na na JALJCS010000061.1 <> na Primary Assembly 1899673 na SCAF_62 unplaced-scaffold na na JALJCS010000062.1 <> na Primary Assembly 1899545 na SCAF_63 unplaced-scaffold na na JALJCS010000063.1 <> na Primary Assembly 1840762 na SCAF_64 unplaced-scaffold na na JALJCS010000064.1 <> na Primary Assembly 1820650 na SCAF_65 unplaced-scaffold na na JALJCS010000065.1 <> na Primary Assembly 1817229 na SCAF_66 unplaced-scaffold na na JALJCS010000066.1 <> na Primary Assembly 1796965 na SCAF_67 unplaced-scaffold na na JALJCS010000067.1 <> na Primary Assembly 1747534 na SCAF_68 unplaced-scaffold na na JALJCS010000068.1 <> na Primary Assembly 1680504 na SCAF_69 unplaced-scaffold na na JALJCS010000069.1 <> na Primary Assembly 1634916 na SCAF_70 unplaced-scaffold na na JALJCS010000070.1 <> na Primary Assembly 1576112 na SCAF_71 unplaced-scaffold na na JALJCS010000071.1 <> na Primary Assembly 1545254 na SCAF_72 unplaced-scaffold na na JALJCS010000072.1 <> na Primary Assembly 1512219 na SCAF_73 unplaced-scaffold na na JALJCS010000073.1 <> na Primary Assembly 1453630 na SCAF_74 unplaced-scaffold na na JALJCS010000074.1 <> na Primary Assembly 1328392 na SCAF_75 unplaced-scaffold na na JALJCS010000075.1 <> na Primary Assembly 1235978 na SCAF_76 unplaced-scaffold na na JALJCS010000076.1 <> na Primary Assembly 1234410 na SCAF_77 unplaced-scaffold na na JALJCS010000077.1 <> na Primary Assembly 1215439 na SCAF_78 unplaced-scaffold na na JALJCS010000078.1 <> na Primary Assembly 1213476 na SCAF_79 unplaced-scaffold na na JALJCS010000079.1 <> na Primary Assembly 1088473 na SCAF_80 unplaced-scaffold na na JALJCS010000080.1 <> na Primary Assembly 1087714 na SCAF_81 unplaced-scaffold na na JALJCS010000081.1 <> na Primary Assembly 960170 na SCAF_82 unplaced-scaffold na na JALJCS010000082.1 <> na Primary Assembly 957511 na SCAF_83 unplaced-scaffold na na JALJCS010000083.1 <> na Primary Assembly 939515 na SCAF_84 unplaced-scaffold na na JALJCS010000084.1 <> na Primary Assembly 787070 na SCAF_85 unplaced-scaffold na na JALJCS010000085.1 <> na Primary Assembly 767868 na SCAF_86 unplaced-scaffold na na JALJCS010000086.1 <> na Primary Assembly 765427 na SCAF_87 unplaced-scaffold na na JALJCS010000087.1 <> na Primary Assembly 743959 na SCAF_88 unplaced-scaffold na na JALJCS010000088.1 <> na Primary Assembly 740393 na SCAF_89 unplaced-scaffold na na JALJCS010000089.1 <> na Primary Assembly 721234 na SCAF_90 unplaced-scaffold na na JALJCS010000090.1 <> na Primary Assembly 677732 na SCAF_91 unplaced-scaffold na na JALJCS010000091.1 <> na Primary Assembly 661846 na SCAF_92 unplaced-scaffold na na JALJCS010000092.1 <> na Primary Assembly 651187 na SCAF_93 unplaced-scaffold na na JALJCS010000093.1 <> na Primary Assembly 642367 na SCAF_94 unplaced-scaffold na na JALJCS010000094.1 <> na Primary Assembly 634774 na SCAF_95 unplaced-scaffold na na JALJCS010000095.1 <> na Primary Assembly 588055 na SCAF_96 unplaced-scaffold na na JALJCS010000096.1 <> na Primary Assembly 540211 na SCAF_97 unplaced-scaffold na na JALJCS010000097.1 <> na Primary Assembly 538425 na SCAF_98 unplaced-scaffold na na JALJCS010000098.1 <> na Primary Assembly 526411 na SCAF_99 unplaced-scaffold na na JALJCS010000099.1 <> na Primary Assembly 479812 na SCAF_100 unplaced-scaffold na na JALJCS010000100.1 <> na Primary Assembly 467186 na SCAF_101 unplaced-scaffold na na JALJCS010000101.1 <> na Primary Assembly 453698 na SCAF_102 unplaced-scaffold na na JALJCS010000102.1 <> na Primary Assembly 444316 na SCAF_103 unplaced-scaffold na na JALJCS010000103.1 <> na Primary Assembly 407598 na SCAF_104 unplaced-scaffold na na JALJCS010000104.1 <> na Primary Assembly 386356 na SCAF_105 unplaced-scaffold na na JALJCS010000105.1 <> na Primary Assembly 385375 na SCAF_106 unplaced-scaffold na na JALJCS010000106.1 <> na Primary Assembly 370174 na SCAF_107 unplaced-scaffold na na JALJCS010000107.1 <> na Primary Assembly 366838 na SCAF_108 unplaced-scaffold na na JALJCS010000108.1 <> na Primary Assembly 364421 na SCAF_109 unplaced-scaffold na na JALJCS010000109.1 <> na Primary Assembly 329336 na SCAF_110 unplaced-scaffold na na JALJCS010000110.1 <> na Primary Assembly 325176 na SCAF_111 unplaced-scaffold na na JALJCS010000111.1 <> na Primary Assembly 322619 na SCAF_112 unplaced-scaffold na na JALJCS010000112.1 <> na Primary Assembly 318623 na SCAF_113 unplaced-scaffold na na JALJCS010000113.1 <> na Primary Assembly 307580 na SCAF_114 unplaced-scaffold na na JALJCS010000114.1 <> na Primary Assembly 298933 na SCAF_115 unplaced-scaffold na na JALJCS010000115.1 <> na Primary Assembly 297197 na SCAF_116 unplaced-scaffold na na JALJCS010000116.1 <> na Primary Assembly 296611 na SCAF_117 unplaced-scaffold na na JALJCS010000117.1 <> na Primary Assembly 274555 na SCAF_118 unplaced-scaffold na na JALJCS010000118.1 <> na Primary Assembly 273010 na SCAF_119 unplaced-scaffold na na JALJCS010000119.1 <> na Primary Assembly 270369 na SCAF_120 unplaced-scaffold na na JALJCS010000120.1 <> na Primary Assembly 267890 na SCAF_121 unplaced-scaffold na na JALJCS010000121.1 <> na Primary Assembly 245812 na SCAF_122 unplaced-scaffold na na JALJCS010000122.1 <> na Primary Assembly 241972 na SCAF_123 unplaced-scaffold na na JALJCS010000123.1 <> na Primary Assembly 235084 na SCAF_124 unplaced-scaffold na na JALJCS010000124.1 <> na Primary Assembly 231493 na SCAF_125 unplaced-scaffold na na JALJCS010000125.1 <> na Primary Assembly 215434 na SCAF_126 unplaced-scaffold na na JALJCS010000126.1 <> na Primary Assembly 214761 na SCAF_127 unplaced-scaffold na na JALJCS010000127.1 <> na Primary Assembly 212404 na SCAF_128 unplaced-scaffold na na JALJCS010000128.1 <> na Primary Assembly 208085 na SCAF_129 unplaced-scaffold na na JALJCS010000129.1 <> na Primary Assembly 200584 na SCAF_130 unplaced-scaffold na na JALJCS010000130.1 <> na Primary Assembly 184617 na SCAF_131 unplaced-scaffold na na JALJCS010000131.1 <> na Primary Assembly 181672 na SCAF_132 unplaced-scaffold na na JALJCS010000132.1 <> na Primary Assembly 177524 na SCAF_133 unplaced-scaffold na na JALJCS010000133.1 <> na Primary Assembly 176848 na SCAF_134 unplaced-scaffold na na JALJCS010000134.1 <> na Primary Assembly 175208 na SCAF_135 unplaced-scaffold na na JALJCS010000135.1 <> na Primary Assembly 174196 na SCAF_136 unplaced-scaffold na na JALJCS010000136.1 <> na Primary Assembly 174122 na SCAF_137 unplaced-scaffold na na JALJCS010000137.1 <> na Primary Assembly 171284 na SCAF_138 unplaced-scaffold na na JALJCS010000138.1 <> na Primary Assembly 171007 na SCAF_139 unplaced-scaffold na na JALJCS010000139.1 <> na Primary Assembly 169727 na SCAF_140 unplaced-scaffold na na JALJCS010000140.1 <> na Primary Assembly 168991 na SCAF_141 unplaced-scaffold na na JALJCS010000141.1 <> na Primary Assembly 168853 na SCAF_142 unplaced-scaffold na na JALJCS010000142.1 <> na Primary Assembly 157274 na SCAF_143 unplaced-scaffold na na JALJCS010000143.1 <> na Primary Assembly 155698 na SCAF_144 unplaced-scaffold na na JALJCS010000144.1 <> na Primary Assembly 155631 na SCAF_145 unplaced-scaffold na na JALJCS010000145.1 <> na Primary Assembly 148864 na SCAF_146 unplaced-scaffold na na JALJCS010000146.1 <> na Primary Assembly 143080 na SCAF_147 unplaced-scaffold na na JALJCS010000147.1 <> na Primary Assembly 142963 na SCAF_148 unplaced-scaffold na na JALJCS010000148.1 <> na Primary Assembly 142354 na SCAF_149 unplaced-scaffold na na JALJCS010000149.1 <> na Primary Assembly 140900 na SCAF_150 unplaced-scaffold na na JALJCS010000150.1 <> na Primary Assembly 140660 na SCAF_151 unplaced-scaffold na na JALJCS010000151.1 <> na Primary Assembly 135590 na SCAF_152 unplaced-scaffold na na JALJCS010000152.1 <> na Primary Assembly 134790 na SCAF_153 unplaced-scaffold na na JALJCS010000153.1 <> na Primary Assembly 132549 na SCAF_154 unplaced-scaffold na na JALJCS010000154.1 <> na Primary Assembly 128238 na SCAF_155 unplaced-scaffold na na JALJCS010000155.1 <> na Primary Assembly 127236 na SCAF_156 unplaced-scaffold na na JALJCS010000156.1 <> na Primary Assembly 125699 na SCAF_157 unplaced-scaffold na na JALJCS010000157.1 <> na Primary Assembly 124279 na SCAF_158 unplaced-scaffold na na JALJCS010000158.1 <> na Primary Assembly 118744 na SCAF_159 unplaced-scaffold na na JALJCS010000159.1 <> na Primary Assembly 113364 na SCAF_160 unplaced-scaffold na na JALJCS010000160.1 <> na Primary Assembly 112628 na SCAF_161 unplaced-scaffold na na JALJCS010000161.1 <> na Primary Assembly 112598 na SCAF_162 unplaced-scaffold na na JALJCS010000162.1 <> na Primary Assembly 112222 na SCAF_163 unplaced-scaffold na na JALJCS010000163.1 <> na Primary Assembly 111005 na SCAF_164 unplaced-scaffold na na JALJCS010000164.1 <> na Primary Assembly 108895 na SCAF_165 unplaced-scaffold na na JALJCS010000165.1 <> na Primary Assembly 108525 na SCAF_166 unplaced-scaffold na na JALJCS010000166.1 <> na Primary Assembly 105251 na SCAF_167 unplaced-scaffold na na JALJCS010000167.1 <> na Primary Assembly 103586 na SCAF_168 unplaced-scaffold na na JALJCS010000168.1 <> na Primary Assembly 100234 na SCAF_169 unplaced-scaffold na na JALJCS010000169.1 <> na Primary Assembly 97779 na SCAF_170 unplaced-scaffold na na JALJCS010000170.1 <> na Primary Assembly 96770 na SCAF_171 unplaced-scaffold na na JALJCS010000171.1 <> na Primary Assembly 95352 na SCAF_172 unplaced-scaffold na na JALJCS010000172.1 <> na Primary Assembly 94118 na SCAF_173 unplaced-scaffold na na JALJCS010000173.1 <> na Primary Assembly 91720 na SCAF_174 unplaced-scaffold na na JALJCS010000174.1 <> na Primary Assembly 82811 na SCAF_175 unplaced-scaffold na na JALJCS010000175.1 <> na Primary Assembly 81258 na SCAF_176 unplaced-scaffold na na JALJCS010000176.1 <> na Primary Assembly 78922 na SCAF_177 unplaced-scaffold na na JALJCS010000177.1 <> na Primary Assembly 78445 na SCAF_178 unplaced-scaffold na na JALJCS010000178.1 <> na Primary Assembly 77285 na SCAF_179 unplaced-scaffold na na JALJCS010000179.1 <> na Primary Assembly 75432 na SCAF_180 unplaced-scaffold na na JALJCS010000180.1 <> na Primary Assembly 75424 na SCAF_181 unplaced-scaffold na na JALJCS010000181.1 <> na Primary Assembly 71738 na SCAF_182 unplaced-scaffold na na JALJCS010000182.1 <> na Primary Assembly 70371 na SCAF_183 unplaced-scaffold na na JALJCS010000183.1 <> na Primary Assembly 64911 na SCAF_184 unplaced-scaffold na na JALJCS010000184.1 <> na Primary Assembly 61283 na SCAF_185 unplaced-scaffold na na JALJCS010000185.1 <> na Primary Assembly 61172 na SCAF_186 unplaced-scaffold na na JALJCS010000186.1 <> na Primary Assembly 59478 na SCAF_187 unplaced-scaffold na na JALJCS010000187.1 <> na Primary Assembly 55858 na SCAF_188 unplaced-scaffold na na JALJCS010000188.1 <> na Primary Assembly 54617 na SCAF_189 unplaced-scaffold na na JALJCS010000189.1 <> na Primary Assembly 53030 na SCAF_190 unplaced-scaffold na na JALJCS010000190.1 <> na Primary Assembly 50889 na SCAF_191 unplaced-scaffold na na JALJCS010000191.1 <> na Primary Assembly 49066 na SCAF_192 unplaced-scaffold na na JALJCS010000192.1 <> na Primary Assembly 45245 na SCAF_193 unplaced-scaffold na na JALJCS010000193.1 <> na Primary Assembly 41941 na SCAF_194 unplaced-scaffold na na JALJCS010000194.1 <> na Primary Assembly 40352 na SCAF_195 unplaced-scaffold na na JALJCS010000195.1 <> na Primary Assembly 40030 na SCAF_196 unplaced-scaffold na na JALJCS010000196.1 <> na Primary Assembly 37702 na SCAF_197 unplaced-scaffold na na JALJCS010000197.1 <> na Primary Assembly 37371 na SCAF_198 unplaced-scaffold na na JALJCS010000198.1 <> na Primary Assembly 37094 na SCAF_199 unplaced-scaffold na na JALJCS010000199.1 <> na Primary Assembly 36450 na SCAF_200 unplaced-scaffold na na JALJCS010000200.1 <> na Primary Assembly 36167 na SCAF_201 unplaced-scaffold na na JALJCS010000201.1 <> na Primary Assembly 35817 na SCAF_202 unplaced-scaffold na na JALJCS010000202.1 <> na Primary Assembly 35750 na SCAF_203 unplaced-scaffold na na JALJCS010000203.1 <> na Primary Assembly 34151 na SCAF_204 unplaced-scaffold na na JALJCS010000204.1 <> na Primary Assembly 33351 na SCAF_205 unplaced-scaffold na na JALJCS010000205.1 <> na Primary Assembly 32866 na SCAF_206 unplaced-scaffold na na JALJCS010000206.1 <> na Primary Assembly 32798 na SCAF_207 unplaced-scaffold na na JALJCS010000207.1 <> na Primary Assembly 32399 na SCAF_208 unplaced-scaffold na na JALJCS010000208.1 <> na Primary Assembly 32334 na SCAF_209 unplaced-scaffold na na JALJCS010000209.1 <> na Primary Assembly 28897 na SCAF_210 unplaced-scaffold na na JALJCS010000210.1 <> na Primary Assembly 28570 na SCAF_211 unplaced-scaffold na na JALJCS010000211.1 <> na Primary Assembly 22873 na SCAF_212 unplaced-scaffold na na JALJCS010000212.1 <> na Primary Assembly 22568 na SCAF_213 unplaced-scaffold na na JALJCS010000213.1 <> na Primary Assembly 15941 na mtDNA assembled-molecule MT Mitochondrion CM041028.1 <> na non-nuclear 16775 na