# Assembly name: dhJugCali1.0.p # Organism name: Juglans californica (California black walnut) # Isolate: Jcal.S.LA.6 # Taxid: 91212 # BioSample: SAMN25062275 # BioProject: PRJNA807334 # Submitter: UCLA # Date: 2022-05-12 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JAKSXK01 # Assembly method: HiFiasm v. 0.16.0-r369; purge_dups v. 1.2.6; SALSA2 v. 2 # Expected final version: yes # Genome coverage: 52x # Sequencing technology: PacBio Sequel IIe; Dovetails OmniC; Illumina NovaSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_023349395.1 # Linked assembly: GCA_023349545.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_023349495.1 Primary Assembly ## GCA_023349505.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SCAF_1 unplaced-scaffold na na JAKSXK010000001.1 <> na Primary Assembly 49971089 na SCAF_2 unplaced-scaffold na na JAKSXK010000002.1 <> na Primary Assembly 43958334 na SCAF_3 unplaced-scaffold na na JAKSXK010000003.1 <> na Primary Assembly 41202548 na SCAF_4 unplaced-scaffold na na JAKSXK010000004.1 <> na Primary Assembly 40159253 na SCAF_5 unplaced-scaffold na na JAKSXK010000005.1 <> na Primary Assembly 37649990 na SCAF_6 unplaced-scaffold na na JAKSXK010000006.1 <> na Primary Assembly 37022817 na SCAF_7 unplaced-scaffold na na JAKSXK010000007.1 <> na Primary Assembly 36519750 na SCAF_8 unplaced-scaffold na na JAKSXK010000008.1 <> na Primary Assembly 35176863 na SCAF_9 unplaced-scaffold na na JAKSXK010000009.1 <> na Primary Assembly 34856054 na SCAF_10 unplaced-scaffold na na JAKSXK010000010.1 <> na Primary Assembly 30656212 na SCAF_11 unplaced-scaffold na na JAKSXK010000011.1 <> na Primary Assembly 30178554 na SCAF_12 unplaced-scaffold na na JAKSXK010000012.1 <> na Primary Assembly 28106075 na SCAF_13 unplaced-scaffold na na JAKSXK010000013.1 <> na Primary Assembly 26925549 na SCAF_14 unplaced-scaffold na na JAKSXK010000014.1 <> na Primary Assembly 23483356 na SCAF_15 unplaced-scaffold na na JAKSXK010000015.1 <> na Primary Assembly 22806099 na SCAF_16 unplaced-scaffold na na JAKSXK010000016.1 <> na Primary Assembly 20515968 na SCAF_17 unplaced-scaffold na na JAKSXK010000017.1 <> na Primary Assembly 1548435 na SCAF_18 unplaced-scaffold na na JAKSXK010000018.1 <> na Primary Assembly 962211 na SCAF_19 unplaced-scaffold na na JAKSXK010000019.1 <> na Primary Assembly 539954 na SCAF_20 unplaced-scaffold na na JAKSXK010000020.1 <> na Primary Assembly 464928 na SCAF_21 unplaced-scaffold na na JAKSXK010000021.1 <> na Primary Assembly 413649 na SCAF_22 unplaced-scaffold na na JAKSXK010000022.1 <> na Primary Assembly 329981 na SCAF_23 unplaced-scaffold na na JAKSXK010000023.1 <> na Primary Assembly 312257 na SCAF_24 unplaced-scaffold na na JAKSXK010000024.1 <> na Primary Assembly 307941 na SCAF_25 unplaced-scaffold na na JAKSXK010000025.1 <> na Primary Assembly 294547 na SCAF_26 unplaced-scaffold na na JAKSXK010000026.1 <> na Primary Assembly 238590 na SCAF_27 unplaced-scaffold na na JAKSXK010000027.1 <> na Primary Assembly 222891 na SCAF_28 unplaced-scaffold na na JAKSXK010000028.1 <> na Primary Assembly 209069 na SCAF_29 unplaced-scaffold na na JAKSXK010000029.1 <> na Primary Assembly 205395 na SCAF_30 unplaced-scaffold na na JAKSXK010000030.1 <> na Primary Assembly 200646 na SCAF_31 unplaced-scaffold na na JAKSXK010000031.1 <> na Primary Assembly 186208 na SCAF_32 unplaced-scaffold na na JAKSXK010000032.1 <> na Primary Assembly 172501 na SCAF_33 unplaced-scaffold na na JAKSXK010000033.1 <> na Primary Assembly 157260 na SCAF_34 unplaced-scaffold na na JAKSXK010000034.1 <> na Primary Assembly 123787 na SCAF_35 unplaced-scaffold na na JAKSXK010000035.1 <> na Primary Assembly 115522 na SCAF_36 unplaced-scaffold na na JAKSXK010000036.1 <> na Primary Assembly 108144 na SCAF_37 unplaced-scaffold na na JAKSXK010000037.1 <> na Primary Assembly 104550 na SCAF_38 unplaced-scaffold na na JAKSXK010000038.1 <> na Primary Assembly 100306 na SCAF_39 unplaced-scaffold na na JAKSXK010000039.1 <> na Primary Assembly 89222 na SCAF_40 unplaced-scaffold na na JAKSXK010000040.1 <> na Primary Assembly 89024 na SCAF_41 unplaced-scaffold na na JAKSXK010000041.1 <> na Primary Assembly 85954 na SCAF_42 unplaced-scaffold na na JAKSXK010000042.1 <> na Primary Assembly 82410 na SCAF_43 unplaced-scaffold na na JAKSXK010000043.1 <> na Primary Assembly 77064 na SCAF_44 unplaced-scaffold na na JAKSXK010000044.1 <> na Primary Assembly 76014 na SCAF_45 unplaced-scaffold na na JAKSXK010000045.1 <> na Primary Assembly 75407 na SCAF_46 unplaced-scaffold na na JAKSXK010000046.1 <> na Primary Assembly 73970 na SCAF_47 unplaced-scaffold na na JAKSXK010000047.1 <> na Primary Assembly 72378 na SCAF_48 unplaced-scaffold na na JAKSXK010000048.1 <> na Primary Assembly 72343 na SCAF_49 unplaced-scaffold na na JAKSXK010000049.1 <> na Primary Assembly 71551 na SCAF_50 unplaced-scaffold na na JAKSXK010000050.1 <> na Primary Assembly 70467 na SCAF_51 unplaced-scaffold na na JAKSXK010000051.1 <> na Primary Assembly 69346 na SCAF_52 unplaced-scaffold na na JAKSXK010000052.1 <> na Primary Assembly 69195 na SCAF_53 unplaced-scaffold na na JAKSXK010000053.1 <> na Primary Assembly 69111 na SCAF_54 unplaced-scaffold na na JAKSXK010000054.1 <> na Primary Assembly 68990 na SCAF_55 unplaced-scaffold na na JAKSXK010000055.1 <> na Primary Assembly 68320 na SCAF_56 unplaced-scaffold na na JAKSXK010000056.1 <> na Primary Assembly 68257 na SCAF_57 unplaced-scaffold na na JAKSXK010000057.1 <> na Primary Assembly 67153 na SCAF_58 unplaced-scaffold na na JAKSXK010000058.1 <> na Primary Assembly 66735 na SCAF_59 unplaced-scaffold na na JAKSXK010000059.1 <> na Primary Assembly 66137 na SCAF_60 unplaced-scaffold na na JAKSXK010000060.1 <> na Primary Assembly 65421 na SCAF_61 unplaced-scaffold na na JAKSXK010000061.1 <> na Primary Assembly 64635 na SCAF_62 unplaced-scaffold na na JAKSXK010000062.1 <> na Primary Assembly 61278 na SCAF_63 unplaced-scaffold na na JAKSXK010000063.1 <> na Primary Assembly 60654 na SCAF_64 unplaced-scaffold na na JAKSXK010000064.1 <> na Primary Assembly 60304 na SCAF_65 unplaced-scaffold na na JAKSXK010000065.1 <> na Primary Assembly 58734 na SCAF_66 unplaced-scaffold na na JAKSXK010000066.1 <> na Primary Assembly 58117 na SCAF_67 unplaced-scaffold na na JAKSXK010000067.1 <> na Primary Assembly 57701 na SCAF_68 unplaced-scaffold na na JAKSXK010000068.1 <> na Primary Assembly 57563 na SCAF_69 unplaced-scaffold na na JAKSXK010000069.1 <> na Primary Assembly 55387 na SCAF_70 unplaced-scaffold na na JAKSXK010000070.1 <> na Primary Assembly 54894 na SCAF_71 unplaced-scaffold na na JAKSXK010000071.1 <> na Primary Assembly 54380 na SCAF_72 unplaced-scaffold na na JAKSXK010000072.1 <> na Primary Assembly 51266 na SCAF_73 unplaced-scaffold na na JAKSXK010000073.1 <> na Primary Assembly 50937 na SCAF_74 unplaced-scaffold na na JAKSXK010000074.1 <> na Primary Assembly 50923 na SCAF_75 unplaced-scaffold na na JAKSXK010000075.1 <> na Primary Assembly 48899 na SCAF_76 unplaced-scaffold na na JAKSXK010000076.1 <> na Primary Assembly 48256 na SCAF_77 unplaced-scaffold na na JAKSXK010000077.1 <> na Primary Assembly 47325 na SCAF_78 unplaced-scaffold na na JAKSXK010000078.1 <> na Primary Assembly 46317 na SCAF_79 unplaced-scaffold na na JAKSXK010000079.1 <> na Primary Assembly 45991 na SCAF_80 unplaced-scaffold na na JAKSXK010000080.1 <> na Primary Assembly 45546 na SCAF_81 unplaced-scaffold na na JAKSXK010000081.1 <> na Primary Assembly 44929 na SCAF_82 unplaced-scaffold na na JAKSXK010000082.1 <> na Primary Assembly 44684 na SCAF_83 unplaced-scaffold na na JAKSXK010000083.1 <> na Primary Assembly 44063 na SCAF_84 unplaced-scaffold na na JAKSXK010000084.1 <> na Primary Assembly 43448 na SCAF_85 unplaced-scaffold na na JAKSXK010000085.1 <> na Primary Assembly 43092 na SCAF_86 unplaced-scaffold na na JAKSXK010000086.1 <> na Primary Assembly 41693 na SCAF_87 unplaced-scaffold na na JAKSXK010000087.1 <> na Primary Assembly 40260 na SCAF_88 unplaced-scaffold na na JAKSXK010000088.1 <> na Primary Assembly 39788 na SCAF_89 unplaced-scaffold na na JAKSXK010000089.1 <> na Primary Assembly 39655 na SCAF_90 unplaced-scaffold na na JAKSXK010000090.1 <> na Primary Assembly 39455 na SCAF_91 unplaced-scaffold na na JAKSXK010000091.1 <> na Primary Assembly 39439 na SCAF_92 unplaced-scaffold na na JAKSXK010000092.1 <> na Primary Assembly 39202 na SCAF_93 unplaced-scaffold na na JAKSXK010000093.1 <> na Primary Assembly 38970 na SCAF_94 unplaced-scaffold na na JAKSXK010000094.1 <> na Primary Assembly 38908 na SCAF_95 unplaced-scaffold na na JAKSXK010000095.1 <> na Primary Assembly 38859 na SCAF_96 unplaced-scaffold na na JAKSXK010000096.1 <> na Primary Assembly 37708 na SCAF_97 unplaced-scaffold na na JAKSXK010000097.1 <> na Primary Assembly 37008 na SCAF_98 unplaced-scaffold na na JAKSXK010000098.1 <> na Primary Assembly 36492 na SCAF_99 unplaced-scaffold na na JAKSXK010000099.1 <> na Primary Assembly 36162 na SCAF_100 unplaced-scaffold na na JAKSXK010000100.1 <> na Primary Assembly 35722 na SCAF_101 unplaced-scaffold na na JAKSXK010000101.1 <> na Primary Assembly 35218 na SCAF_102 unplaced-scaffold na na JAKSXK010000102.1 <> na Primary Assembly 35195 na SCAF_103 unplaced-scaffold na na JAKSXK010000103.1 <> na Primary Assembly 33828 na SCAF_104 unplaced-scaffold na na JAKSXK010000104.1 <> na Primary Assembly 33723 na SCAF_105 unplaced-scaffold na na JAKSXK010000105.1 <> na Primary Assembly 33474 na SCAF_106 unplaced-scaffold na na JAKSXK010000106.1 <> na Primary Assembly 33007 na SCAF_107 unplaced-scaffold na na JAKSXK010000107.1 <> na Primary Assembly 32963 na SCAF_108 unplaced-scaffold na na JAKSXK010000108.1 <> na Primary Assembly 32788 na SCAF_109 unplaced-scaffold na na JAKSXK010000109.1 <> na Primary Assembly 32475 na SCAF_110 unplaced-scaffold na na JAKSXK010000110.1 <> na Primary Assembly 31951 na SCAF_111 unplaced-scaffold na na JAKSXK010000111.1 <> na Primary Assembly 31373 na SCAF_112 unplaced-scaffold na na JAKSXK010000112.1 <> na Primary Assembly 31097 na SCAF_113 unplaced-scaffold na na JAKSXK010000113.1 <> na Primary Assembly 31092 na SCAF_114 unplaced-scaffold na na JAKSXK010000114.1 <> na Primary Assembly 31012 na SCAF_115 unplaced-scaffold na na JAKSXK010000115.1 <> na Primary Assembly 30989 na SCAF_116 unplaced-scaffold na na JAKSXK010000116.1 <> na Primary Assembly 30431 na SCAF_117 unplaced-scaffold na na JAKSXK010000117.1 <> na Primary Assembly 30071 na SCAF_118 unplaced-scaffold na na JAKSXK010000118.1 <> na Primary Assembly 29567 na SCAF_119 unplaced-scaffold na na JAKSXK010000119.1 <> na Primary Assembly 28943 na SCAF_120 unplaced-scaffold na na JAKSXK010000120.1 <> na Primary Assembly 28922 na SCAF_121 unplaced-scaffold na na JAKSXK010000121.1 <> na Primary Assembly 28737 na SCAF_122 unplaced-scaffold na na JAKSXK010000122.1 <> na Primary Assembly 28158 na SCAF_123 unplaced-scaffold na na JAKSXK010000123.1 <> na Primary Assembly 27446 na SCAF_124 unplaced-scaffold na na JAKSXK010000124.1 <> na Primary Assembly 27215 na SCAF_125 unplaced-scaffold na na JAKSXK010000125.1 <> na Primary Assembly 26880 na SCAF_126 unplaced-scaffold na na JAKSXK010000126.1 <> na Primary Assembly 26729 na SCAF_127 unplaced-scaffold na na JAKSXK010000127.1 <> na Primary Assembly 26728 na SCAF_128 unplaced-scaffold na na JAKSXK010000128.1 <> na Primary Assembly 26651 na SCAF_129 unplaced-scaffold na na JAKSXK010000129.1 <> na Primary Assembly 26515 na SCAF_130 unplaced-scaffold na na JAKSXK010000130.1 <> na Primary Assembly 24676 na SCAF_131 unplaced-scaffold na na JAKSXK010000131.1 <> na Primary Assembly 24517 na SCAF_132 unplaced-scaffold na na JAKSXK010000132.1 <> na Primary Assembly 24023 na SCAF_133 unplaced-scaffold na na JAKSXK010000133.1 <> na Primary Assembly 23118 na SCAF_134 unplaced-scaffold na na JAKSXK010000134.1 <> na Primary Assembly 22452 na SCAF_135 unplaced-scaffold na na JAKSXK010000135.1 <> na Primary Assembly 21796 na SCAF_136 unplaced-scaffold na na JAKSXK010000136.1 <> na Primary Assembly 20940 na SCAF_137 unplaced-scaffold na na JAKSXK010000137.1 <> na Primary Assembly 20607 na mtDNA unlocalized-scaffold MT Mitochondrion JAKSXK010000138.1 <> na non-nuclear 701569 na