# Assembly name: rActPal1.0.p # Organism name: Actinemys pallida (Southwestern pond turtle) # Isolate: HBS135687 # Sex: male # Taxid: 1485138 # BioSample: SAMN25872472 # BioProject: PRJNA810504 # Submitter: UCLA # Date: 2022-06-01 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JALMGD01 # Assembly method: HiFiasm v. 0.16.1-r375; purge_dups v. 1.2.6; SALSA2 v. 2 # Expected final version: yes # Genome coverage: 39x # Sequencing technology: PacBio Sequel II; PacBio Sequel IIe; Dovetails OmniC; Illumina NovaSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_023634205.1 # Linked assembly: GCA_023634275.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_023634215.1 Primary Assembly ## GCA_023634225.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SCAF_1 unplaced-scaffold na na JALMGD010000001.1 <> na Primary Assembly 375636512 na SCAF_2 unplaced-scaffold na na JALMGD010000002.1 <> na Primary Assembly 297497930 na SCAF_3 unplaced-scaffold na na JALMGD010000003.1 <> na Primary Assembly 217627244 na SCAF_4 unplaced-scaffold na na JALMGD010000004.1 <> na Primary Assembly 152625797 na SCAF_5 unplaced-scaffold na na JALMGD010000005.1 <> na Primary Assembly 140349533 na SCAF_6 unplaced-scaffold na na JALMGD010000006.1 <> na Primary Assembly 138704068 na SCAF_7 unplaced-scaffold na na JALMGD010000007.1 <> na Primary Assembly 133627432 na SCAF_8 unplaced-scaffold na na JALMGD010000008.1 <> na Primary Assembly 115440104 na SCAF_9 unplaced-scaffold na na JALMGD010000009.1 <> na Primary Assembly 109345277 na SCAF_10 unplaced-scaffold na na JALMGD010000010.1 <> na Primary Assembly 93983910 na SCAF_11 unplaced-scaffold na na JALMGD010000011.1 <> na Primary Assembly 81160760 na SCAF_12 unplaced-scaffold na na JALMGD010000012.1 <> na Primary Assembly 49559383 na SCAF_13 unplaced-scaffold na na JALMGD010000013.1 <> na Primary Assembly 48769672 na SCAF_14 unplaced-scaffold na na JALMGD010000014.1 <> na Primary Assembly 47622973 na SCAF_15 unplaced-scaffold na na JALMGD010000015.1 <> na Primary Assembly 36242305 na SCAF_16 unplaced-scaffold na na JALMGD010000016.1 <> na Primary Assembly 27552506 na SCAF_17 unplaced-scaffold na na JALMGD010000017.1 <> na Primary Assembly 27273758 na SCAF_18 unplaced-scaffold na na JALMGD010000018.1 <> na Primary Assembly 25289943 na SCAF_19 unplaced-scaffold na na JALMGD010000019.1 <> na Primary Assembly 22730365 na SCAF_20 unplaced-scaffold na na JALMGD010000020.1 <> na Primary Assembly 21832577 na SCAF_21 unplaced-scaffold na na JALMGD010000021.1 <> na Primary Assembly 19770631 na SCAF_22 unplaced-scaffold na na JALMGD010000022.1 <> na Primary Assembly 18760104 na SCAF_23 unplaced-scaffold na na JALMGD010000023.1 <> na Primary Assembly 17898726 na SCAF_24 unplaced-scaffold na na JALMGD010000024.1 <> na Primary Assembly 15802994 na SCAF_25 unplaced-scaffold na na JALMGD010000025.1 <> na Primary Assembly 15002223 na SCAF_26 unplaced-scaffold na na JALMGD010000026.1 <> na Primary Assembly 13098140 na SCAF_27 unplaced-scaffold na na JALMGD010000027.1 <> na Primary Assembly 9345662 na SCAF_28 unplaced-scaffold na na JALMGD010000028.1 <> na Primary Assembly 9345014 na SCAF_29 unplaced-scaffold na na JALMGD010000029.1 <> na Primary Assembly 8783495 na SCAF_30 unplaced-scaffold na na JALMGD010000030.1 <> na Primary Assembly 7602163 na SCAF_31 unplaced-scaffold na na JALMGD010000031.1 <> na Primary Assembly 4531217 na SCAF_32 unplaced-scaffold na na JALMGD010000032.1 <> na Primary Assembly 4491181 na SCAF_33 unplaced-scaffold na na JALMGD010000033.1 <> na Primary Assembly 2755949 na SCAF_34 unplaced-scaffold na na JALMGD010000034.1 <> na Primary Assembly 2583865 na SCAF_35 unplaced-scaffold na na JALMGD010000035.1 <> na Primary Assembly 2455822 na SCAF_36 unplaced-scaffold na na JALMGD010000036.1 <> na Primary Assembly 1780488 na SCAF_37 unplaced-scaffold na na JALMGD010000037.1 <> na Primary Assembly 1705411 na SCAF_38 unplaced-scaffold na na JALMGD010000038.1 <> na Primary Assembly 1536302 na SCAF_39 unplaced-scaffold na na JALMGD010000039.1 <> na Primary Assembly 1374974 na SCAF_40 unplaced-scaffold na na JALMGD010000040.1 <> na Primary Assembly 1328258 na SCAF_41 unplaced-scaffold na na JALMGD010000041.1 <> na Primary Assembly 945726 na SCAF_42 unplaced-scaffold na na JALMGD010000042.1 <> na Primary Assembly 804570 na SCAF_43 unplaced-scaffold na na JALMGD010000043.1 <> na Primary Assembly 625240 na SCAF_44 unplaced-scaffold na na JALMGD010000044.1 <> na Primary Assembly 605760 na SCAF_45 unplaced-scaffold na na JALMGD010000045.1 <> na Primary Assembly 456780 na SCAF_46 unplaced-scaffold na na JALMGD010000046.1 <> na Primary Assembly 252895 na SCAF_47 unplaced-scaffold na na JALMGD010000047.1 <> na Primary Assembly 174614 na SCAF_48 unplaced-scaffold na na JALMGD010000048.1 <> na Primary Assembly 92633 na SCAF_49 unplaced-scaffold na na JALMGD010000049.1 <> na Primary Assembly 50113 na SCAF_50 unplaced-scaffold na na JALMGD010000050.1 <> na Primary Assembly 31530 na SCAF_51 unplaced-scaffold na na JALMGD010000051.1 <> na Primary Assembly 27473 na SCAF_52 unplaced-scaffold na na JALMGD010000052.1 <> na Primary Assembly 19220 na mtDNA unlocalized-scaffold MT Mitochondrion JALMGD010000053.1 <> na non-nuclear 17125 na