# Assembly name: DD_ASM_B1 # Organism name: Phaethornis superciliosus (long-tailed hermit) # Isolate: PSU5 # Sex: male # Taxid: 46513 # BioSample: SAMN23532249 # BioProject: PRJNA785144 # Submitter: The Max Planck Institute of Molecular Cell Biology and Genetics # Date: 2022-06-01 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JAJQWJ01 # Assembly method: FALCON v. falcon-kit 1.8.1; Falcon Unzip v. 1.3.7; purge_dups v. 1.2.3; scaff10x v. 4.2; LongRanger v. 2.2.2; Bionano Solve v. 3.5.1; salsa2 v. 2.2; pbmm2 v. 1.3.0; freebayes v. 1.3.2; bwa v. 0.7.17-r1188; gcpp v. 2.0.2; bcftools v. 1.12-21-ga865a16 # Expected final version: yes # Genome coverage: 85.0x # Sequencing technology: PacBio Sequel II CLR; 10X Genomics linked reads; Arima Genomics Hi-C (v2); Bionano Genomics DLS # RefSeq category: Representative Genome # GenBank assembly accession: GCA_023637945.1 # Linked assembly: GCA_023637925.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_023637955.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name manual_scaffold_1 unplaced-scaffold na na JAJQWJ010000001.1 <> na Primary Assembly 196608326 na manual_scaffold_2 unplaced-scaffold na na JAJQWJ010000002.1 <> na Primary Assembly 149693836 na manual_scaffold_3 unplaced-scaffold na na JAJQWJ010000003.1 <> na Primary Assembly 114538493 na manual_scaffold_4 unplaced-scaffold na na JAJQWJ010000004.1 <> na Primary Assembly 72710393 na manual_scaffold_5 unplaced-scaffold na na JAJQWJ010000005.1 <> na Primary Assembly 44855412 na manual_scaffold_6 unplaced-scaffold na na JAJQWJ010000006.1 <> na Primary Assembly 43268209 na manual_scaffold_7 unplaced-scaffold na na JAJQWJ010000007.1 <> na Primary Assembly 38810958 na manual_scaffold_8 unplaced-scaffold na na JAJQWJ010000008.1 <> na Primary Assembly 35194150 na manual_scaffold_9 unplaced-scaffold na na JAJQWJ010000009.1 <> na Primary Assembly 30563898 na manual_scaffold_10 unplaced-scaffold na na JAJQWJ010000010.1 <> na Primary Assembly 25219980 na manual_scaffold_11 unplaced-scaffold na na JAJQWJ010000011.1 <> na Primary Assembly 22990413 na manual_scaffold_12 unplaced-scaffold na na JAJQWJ010000012.1 <> na Primary Assembly 21286868 na manual_scaffold_13 unplaced-scaffold na na JAJQWJ010000013.1 <> na Primary Assembly 21155050 na manual_scaffold_14 unplaced-scaffold na na JAJQWJ010000014.1 <> na Primary Assembly 20292787 na manual_scaffold_15 unplaced-scaffold na na JAJQWJ010000015.1 <> na Primary Assembly 19651430 na manual_scaffold_16 unplaced-scaffold na na JAJQWJ010000016.1 <> na Primary Assembly 17927688 na manual_scaffold_17 unplaced-scaffold na na JAJQWJ010000017.1 <> na Primary Assembly 16180483 na manual_scaffold_18 unplaced-scaffold na na JAJQWJ010000018.1 <> na Primary Assembly 16126040 na manual_scaffold_19 unplaced-scaffold na na JAJQWJ010000019.1 <> na Primary Assembly 14857095 na manual_scaffold_20 unplaced-scaffold na na JAJQWJ010000020.1 <> na Primary Assembly 13671754 na manual_scaffold_21 unplaced-scaffold na na JAJQWJ010000021.1 <> na Primary Assembly 11902160 na manual_scaffold_22 unplaced-scaffold na na JAJQWJ010000022.1 <> na Primary Assembly 10777928 na manual_scaffold_23 unplaced-scaffold na na JAJQWJ010000023.1 <> na Primary Assembly 10713265 na manual_scaffold_24 unplaced-scaffold na na JAJQWJ010000024.1 <> na Primary Assembly 7108234 na manual_scaffold_25 unplaced-scaffold na na JAJQWJ010000025.1 <> na Primary Assembly 6082492 na manual_scaffold_26 unplaced-scaffold na na JAJQWJ010000026.1 <> na Primary Assembly 7779952 na manual_scaffold_27 unplaced-scaffold na na JAJQWJ010000027.1 <> na Primary Assembly 7236442 na manual_scaffold_28 unplaced-scaffold na na JAJQWJ010000028.1 <> na Primary Assembly 4877725 na manual_scaffold_29 unplaced-scaffold na na JAJQWJ010000029.1 <> na Primary Assembly 5177833 na manual_scaffold_30 unplaced-scaffold na na JAJQWJ010000030.1 <> na Primary Assembly 5602443 na manual_scaffold_31 unplaced-scaffold na na JAJQWJ010000031.1 <> na Primary Assembly 1333949 na manual_scaffold_32 unplaced-scaffold na na JAJQWJ010000032.1 <> na Primary Assembly 1431168 na manual_scaffold_33 unplaced-scaffold na na JAJQWJ010000033.1 <> na Primary Assembly 89116 na manual_scaffold_34 unplaced-scaffold na na JAJQWJ010000034.1 <> na Primary Assembly 95768 na manual_scaffold_35 unplaced-scaffold na na JAJQWJ010000035.1 <> na Primary Assembly 799759 na manual_scaffold_36 unplaced-scaffold na na JAJQWJ010000036.1 <> na Primary Assembly 608154 na manual_scaffold_37 unplaced-scaffold na na JAJQWJ010000037.1 <> na Primary Assembly 497980 na manual_scaffold_38 unplaced-scaffold na na JAJQWJ010000038.1 <> na Primary Assembly 320662 na manual_scaffold_39 unplaced-scaffold na na JAJQWJ010000039.1 <> na Primary Assembly 181560 na manual_scaffold_40 unplaced-scaffold na na JAJQWJ010000040.1 <> na Primary Assembly 174454 na manual_scaffold_41 unplaced-scaffold na na JAJQWJ010000041.1 <> na Primary Assembly 171350 na manual_scaffold_42 unplaced-scaffold na na JAJQWJ010000042.1 <> na Primary Assembly 136175 na manual_scaffold_43 unplaced-scaffold na na JAJQWJ010000043.1 <> na Primary Assembly 120179 na manual_scaffold_44 unplaced-scaffold na na JAJQWJ010000044.1 <> na Primary Assembly 117669 na manual_scaffold_45 unplaced-scaffold na na JAJQWJ010000045.1 <> na Primary Assembly 113173 na manual_scaffold_46 unplaced-scaffold na na JAJQWJ010000046.1 <> na Primary Assembly 111634 na manual_scaffold_47 unplaced-scaffold na na JAJQWJ010000047.1 <> na Primary Assembly 106406 na manual_scaffold_48 unplaced-scaffold na na JAJQWJ010000048.1 <> na Primary Assembly 65202 na manual_scaffold_49 unplaced-scaffold na na JAJQWJ010000049.1 <> na Primary Assembly 58731 na manual_scaffold_50 unplaced-scaffold na na JAJQWJ010000050.1 <> na Primary Assembly 55922 na manual_scaffold_51 unplaced-scaffold na na JAJQWJ010000051.1 <> na Primary Assembly 55832 na manual_scaffold_52 unplaced-scaffold na na JAJQWJ010000052.1 <> na Primary Assembly 52971 na manual_scaffold_53 unplaced-scaffold na na JAJQWJ010000053.1 <> na Primary Assembly 49069 na manual_scaffold_54 unplaced-scaffold na na JAJQWJ010000054.1 <> na Primary Assembly 47312 na manual_scaffold_55 unplaced-scaffold na na JAJQWJ010000055.1 <> na Primary Assembly 47039 na manual_scaffold_56 unplaced-scaffold na na JAJQWJ010000056.1 <> na Primary Assembly 45644 na manual_scaffold_57 unplaced-scaffold na na JAJQWJ010000057.1 <> na Primary Assembly 44945 na manual_scaffold_58 unplaced-scaffold na na JAJQWJ010000058.1 <> na Primary Assembly 44896 na manual_scaffold_59 unplaced-scaffold na na JAJQWJ010000059.1 <> na Primary Assembly 43228 na manual_scaffold_60 unplaced-scaffold na na JAJQWJ010000060.1 <> na Primary Assembly 33150 na manual_scaffold_61 unplaced-scaffold na na JAJQWJ010000061.1 <> na Primary Assembly 30055 na manual_scaffold_62 unplaced-scaffold na na JAJQWJ010000062.1 <> na Primary Assembly 28669 na manual_scaffold_63 unplaced-scaffold na na JAJQWJ010000063.1 <> na Primary Assembly 28083 na manual_scaffold_64 unplaced-scaffold na na JAJQWJ010000064.1 <> na Primary Assembly 27888 na manual_scaffold_65 unplaced-scaffold na na JAJQWJ010000065.1 <> na Primary Assembly 24748 na manual_scaffold_66 unplaced-scaffold na na JAJQWJ010000066.1 <> na Primary Assembly 18710 na manual_scaffold_67 unplaced-scaffold na na JAJQWJ010000067.1 <> na Primary Assembly 15212 na manual_scaffold_68 unplaced-scaffold na na JAJQWJ010000068.1 <> na Primary Assembly 9318 na manual_scaffold_69 unplaced-scaffold na na JAJQWJ010000069.1 <> na Primary Assembly 8356 na manual_scaffold_70 unplaced-scaffold na na JAJQWJ010000070.1 <> na Primary Assembly 6938 na