# Assembly name: rVipLat1.pri # Organism name: Vipera latastei (snakes) # Isolate: rVipLat1 # Sex: male # Taxid: 246179 # BioSample: SAMN28408464 # BioProject: PRJNA838200 # Submitter: Vertebrate Genomes Project # Date: 2022-07-20 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JANCQY01 # Assembly method: hifiasm v. 0.13; purge_dups v. 1.2.5; Bionano solve v. 3.6.1; salsa v. 2.2; gEVAL v. 2021-12-08; VGP pipeline v. 2.0 # Expected final version: no # Genome coverage: 31.51x # Sequencing technology: PacBio Sequel II HiFi; Bionano DLE1; Arima Hi-C # RefSeq category: Representative Genome # GenBank assembly accession: GCA_024294585.1 # Linked assembly: GCA_024294605.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_024294595.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM044354.1 <> na Primary Assembly 370625026 na SUPER_2 assembled-molecule 2 Chromosome CM044355.1 <> na Primary Assembly 299851254 na SUPER_3 assembled-molecule 3 Chromosome CM044356.1 <> na Primary Assembly 222489854 na SUPER_4 assembled-molecule 4 Chromosome CM044357.1 <> na Primary Assembly 125670642 na SUPER_5 assembled-molecule 5 Chromosome CM044358.1 <> na Primary Assembly 104936932 na SUPER_6 assembled-molecule 6 Chromosome CM044359.1 <> na Primary Assembly 93683332 na SUPER_7 assembled-molecule 7 Chromosome CM044360.1 <> na Primary Assembly 81433429 na SUPER_8 assembled-molecule 8 Chromosome CM044361.1 <> na Primary Assembly 26998501 na SUPER_9 assembled-molecule 9 Chromosome CM044362.1 <> na Primary Assembly 26768190 na SUPER_10 assembled-molecule 10 Chromosome CM044363.1 <> na Primary Assembly 23634956 na SUPER_11 assembled-molecule 11 Chromosome CM044364.1 <> na Primary Assembly 21803658 na SUPER_12 assembled-molecule 12 Chromosome CM044365.1 <> na Primary Assembly 21693520 na SUPER_13 assembled-molecule 13 Chromosome CM044366.1 <> na Primary Assembly 19475667 na SUPER_14 assembled-molecule 14 Chromosome CM044367.1 <> na Primary Assembly 13921677 na SUPER_15 assembled-molecule 15 Chromosome CM044368.1 <> na Primary Assembly 11041075 na SUPER_16 assembled-molecule 16 Chromosome CM044369.1 <> na Primary Assembly 10687395 na SUPER_17 assembled-molecule 17 Chromosome CM044370.1 <> na Primary Assembly 7404660 na SUPER_Z assembled-molecule Z Chromosome CM044371.1 <> na Primary Assembly 138011600 na ragtag_rVipLat_s021_ctg1 unplaced-scaffold na na JANCQY010000019.1 <> na Primary Assembly 3221735 na ragtag_rVipLat_s027_ctg1 unplaced-scaffold na na JANCQY010000020.1 <> na Primary Assembly 1436155 na ragtag_rVipLat_s028_ctg1 unplaced-scaffold na na JANCQY010000021.1 <> na Primary Assembly 1424586 na ragtag_rVipLat_s029_ctg1 unplaced-scaffold na na JANCQY010000022.1 <> na Primary Assembly 1379284 na ragtag_rVipLat_s031_ctg1 unplaced-scaffold na na JANCQY010000023.1 <> na Primary Assembly 1276656 na ragtag_rVipLat_s033_ctg1 unplaced-scaffold na na JANCQY010000025.1 <> na Primary Assembly 694049 na ragtag_rVipLat_s034_ctg1 unplaced-scaffold na na JANCQY010000026.1 <> na Primary Assembly 668582 na ragtag_rVipLat_s083_ctg1 unplaced-scaffold na na JANCQY010000027.1 <> na Primary Assembly 107423 na ragtag_rVipLat_s089_ctg1 unplaced-scaffold na na JANCQY010000028.1 <> na Primary Assembly 96462 na ragtag_rVipLat_s105_ctg1 unplaced-scaffold na na JANCQY010000029.1 <> na Primary Assembly 76380 na ragtag_rVipLat_s124_ctg1 unplaced-scaffold na na JANCQY010000030.1 <> na Primary Assembly 60431 na ragtag_rVipLat_s126_ctg1 unplaced-scaffold na na JANCQY010000031.1 <> na Primary Assembly 59942 na ragtag_rVipLat_s128_ctg1 unplaced-scaffold na na JANCQY010000032.1 <> na Primary Assembly 58315 na ragtag_rVipLat_s136_ctg1 unplaced-scaffold na na JANCQY010000033.1 <> na Primary Assembly 55045 na ragtag_rVipLat_s143_ctg1 unplaced-scaffold na na JANCQY010000034.1 <> na Primary Assembly 52577 na ragtag_rVipLat_s144_ctg1 unplaced-scaffold na na JANCQY010000035.1 <> na Primary Assembly 52525 na ragtag_rVipLat_s156_ctg1 unplaced-scaffold na na JANCQY010000024.1 <> na Primary Assembly 48157 na ragtag_rVipLat_s160_ctg1 unplaced-scaffold na na JANCQY010000036.1 <> na Primary Assembly 46455 na ragtag_rVipLat_s162_ctg1 unplaced-scaffold na na JANCQY010000037.1 <> na Primary Assembly 45603 na ragtag_rVipLat_s164_ctg1 unplaced-scaffold na na JANCQY010000038.1 <> na Primary Assembly 43761 na ragtag_rVipLat_s172_ctg1 unplaced-scaffold na na JANCQY010000039.1 <> na Primary Assembly 42215 na ragtag_rVipLat_s184_ctg1 unplaced-scaffold na na JANCQY010000040.1 <> na Primary Assembly 39120 na ragtag_rVipLat_s193_ctg1 unplaced-scaffold na na JANCQY010000041.1 <> na Primary Assembly 38130 na ragtag_rVipLat_s196_ctg1 unplaced-scaffold na na JANCQY010000042.1 <> na Primary Assembly 35575 na ragtag_rVipLat_s200_ctg1 unplaced-scaffold na na JANCQY010000043.1 <> na Primary Assembly 33944 na ragtag_rVipLat_s202_ctg1 unplaced-scaffold na na JANCQY010000044.1 <> na Primary Assembly 33295 na ragtag_rVipLat_s207_ctg1 unplaced-scaffold na na JANCQY010000045.1 <> na Primary Assembly 32077 na ragtag_rVipLat_s211_ctg1 unplaced-scaffold na na JANCQY010000046.1 <> na Primary Assembly 31021 na ragtag_rVipLat_s212_ctg1 unplaced-scaffold na na JANCQY010000047.1 <> na Primary Assembly 30604 na ragtag_rVipLat_s219_ctg1 unplaced-scaffold na na JANCQY010000048.1 <> na Primary Assembly 29517 na ragtag_rVipLat_s223_ctg1 unplaced-scaffold na na JANCQY010000049.1 <> na Primary Assembly 28333 na ragtag_rVipLat_s230_ctg1 unplaced-scaffold na na JANCQY010000050.1 <> na Primary Assembly 26599 na ragtag_rVipLat_s234_ctg1 unplaced-scaffold na na JANCQY010000051.1 <> na Primary Assembly 25369 na ragtag_rVipLat_s235_ctg1 unplaced-scaffold na na JANCQY010000052.1 <> na Primary Assembly 24170 na ragtag_rVipLat_s236_ctg1 unplaced-scaffold na na JANCQY010000053.1 <> na Primary Assembly 24019 na ragtag_rVipLat_s239_ctg1 unplaced-scaffold na na JANCQY010000054.1 <> na Primary Assembly 23232 na ragtag_rVipLat_s243_ctg1 unplaced-scaffold na na JANCQY010000055.1 <> na Primary Assembly 18889 na ragtag_rVipLat_s246_ctg1 unplaced-scaffold na na JANCQY010000056.1 <> na Primary Assembly 17313 na