# Assembly name: ASM2445387v1 # Organism name: Scardinius erythrophthalmus (rudd) # Infraspecific name: ecotype=Europe # Isolate: DD20220513a # Taxid: 58319 # BioSample: SAMN28618522 # BioProject: PRJNA841808 # Submitter: The Max Planck Institute of Molecular Cell Biology and Genetics # Date: 2022-07-27 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAMKMT01 # Assembly method: HiFiasm v. 0.16.1; bwa-mem v. 0.7.17; yahs v. 1.1a; pbmm2 v. 1.3.0; gcpp v. 2.0.2; bcftools v. 1.12; deepvariant v. 1.2.0; pbccs v. 6.4.0; deepconsensus v. 0.2.0 # Expected final version: yes # Genome coverage: 26x # Sequencing technology: PacBio Sequel; Illumina NovaSeq # GenBank assembly accession: GCA_024453875.1 # Linked assembly: GCA_024362915.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_024453885.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name manual_scaffold_1 assembled-molecule 1 Chromosome CM044568.1 <> na Primary Assembly 71183178 na manual_scaffold_2 assembled-molecule 2 Chromosome CM044569.1 <> na Primary Assembly 61278466 na manual_scaffold_3 assembled-molecule 3 Chromosome CM044570.1 <> na Primary Assembly 61099557 na manual_scaffold_4 assembled-molecule 4 Chromosome CM044571.1 <> na Primary Assembly 57084003 na manual_scaffold_5 assembled-molecule 5 Chromosome CM044572.1 <> na Primary Assembly 56081544 na manual_scaffold_6 assembled-molecule 6 Chromosome CM044573.1 <> na Primary Assembly 51373459 na manual_scaffold_7 assembled-molecule 7 Chromosome CM044574.1 <> na Primary Assembly 51065243 na manual_scaffold_8 assembled-molecule 8 Chromosome CM044575.1 <> na Primary Assembly 49632054 na manual_scaffold_9 assembled-molecule 9 Chromosome CM044576.1 <> na Primary Assembly 44139960 na manual_scaffold_10 assembled-molecule 10 Chromosome CM044577.1 <> na Primary Assembly 43845435 na manual_scaffold_11 assembled-molecule 11 Chromosome CM044578.1 <> na Primary Assembly 43047924 na manual_scaffold_12 assembled-molecule 12 Chromosome CM044579.1 <> na Primary Assembly 42669369 na manual_scaffold_13 assembled-molecule 13 Chromosome CM044580.1 <> na Primary Assembly 41453787 na manual_scaffold_14 assembled-molecule 14 Chromosome CM044581.1 <> na Primary Assembly 41392991 na manual_scaffold_15 assembled-molecule 15 Chromosome CM044582.1 <> na Primary Assembly 41097541 na manual_scaffold_16 assembled-molecule 16 Chromosome CM044583.1 <> na Primary Assembly 40983936 na manual_scaffold_17 assembled-molecule 17 Chromosome CM044584.1 <> na Primary Assembly 40546366 na manual_scaffold_18 assembled-molecule 18 Chromosome CM044585.1 <> na Primary Assembly 39491479 na manual_scaffold_19 assembled-molecule 19 Chromosome CM044586.1 <> na Primary Assembly 38892418 na manual_scaffold_20 assembled-molecule 20 Chromosome CM044587.1 <> na Primary Assembly 38563154 na manual_scaffold_21 assembled-molecule 21 Chromosome CM044588.1 <> na Primary Assembly 38433667 na manual_scaffold_22 assembled-molecule 22 Chromosome CM044589.1 <> na Primary Assembly 35929886 na manual_scaffold_23 assembled-molecule 23 Chromosome CM044590.1 <> na Primary Assembly 33776326 na manual_scaffold_24 assembled-molecule 24 Chromosome CM044591.1 <> na Primary Assembly 32360528 na manual_scaffold_25 assembled-molecule 25 Chromosome CM044592.1 <> na Primary Assembly 30824111 na scaffold_34 unplaced-scaffold na na JAMKMT010000026.1 <> na Primary Assembly 1630052 na scaffold_43 unplaced-scaffold na na JAMKMT010000027.1 <> na Primary Assembly 773274 na scaffold_51 unplaced-scaffold na na JAMKMT010000028.1 <> na Primary Assembly 529791 na scaffold_54 unplaced-scaffold na na JAMKMT010000029.1 <> na Primary Assembly 470003 na scaffold_65 unplaced-scaffold na na JAMKMT010000030.1 <> na Primary Assembly 315005 na scaffold_69 unplaced-scaffold na na JAMKMT010000031.1 <> na Primary Assembly 249703 na scaffold_70 unplaced-scaffold na na JAMKMT010000032.1 <> na Primary Assembly 230065 na scaffold_71 unplaced-scaffold na na JAMKMT010000033.1 <> na Primary Assembly 222613 na scaffold_76 unplaced-scaffold na na JAMKMT010000034.1 <> na Primary Assembly 188275 na scaffold_80 unplaced-scaffold na na JAMKMT010000035.1 <> na Primary Assembly 177000 na scaffold_84 unplaced-scaffold na na JAMKMT010000036.1 <> na Primary Assembly 169014 na scaffold_85 unplaced-scaffold na na JAMKMT010000037.1 <> na Primary Assembly 167109 na scaffold_86 unplaced-scaffold na na JAMKMT010000038.1 <> na Primary Assembly 165795 na scaffold_87 unplaced-scaffold na na JAMKMT010000039.1 <> na Primary Assembly 160053 na scaffold_88 unplaced-scaffold na na JAMKMT010000040.1 <> na Primary Assembly 159025 na scaffold_89 unplaced-scaffold na na JAMKMT010000041.1 <> na Primary Assembly 156005 na scaffold_90 unplaced-scaffold na na JAMKMT010000042.1 <> na Primary Assembly 153302 na scaffold_91 unplaced-scaffold na na JAMKMT010000043.1 <> na Primary Assembly 153000 na scaffold_94 unplaced-scaffold na na JAMKMT010000044.1 <> na Primary Assembly 148530 na scaffold_97 unplaced-scaffold na na JAMKMT010000045.1 <> na Primary Assembly 132052 na scaffold_98 unplaced-scaffold na na JAMKMT010000046.1 <> na Primary Assembly 131787 na scaffold_99 unplaced-scaffold na na JAMKMT010000047.1 <> na Primary Assembly 129000 na scaffold_100 unplaced-scaffold na na JAMKMT010000048.1 <> na Primary Assembly 126399 na scaffold_101 unplaced-scaffold na na JAMKMT010000049.1 <> na Primary Assembly 120790 na scaffold_103 unplaced-scaffold na na JAMKMT010000050.1 <> na Primary Assembly 106992 na scaffold_106 unplaced-scaffold na na JAMKMT010000051.1 <> na Primary Assembly 98001 na scaffold_109 unplaced-scaffold na na JAMKMT010000052.1 <> na Primary Assembly 90604 na scaffold_110 unplaced-scaffold na na JAMKMT010000053.1 <> na Primary Assembly 90001 na scaffold_112 unplaced-scaffold na na JAMKMT010000054.1 <> na Primary Assembly 84999 na scaffold_114 unplaced-scaffold na na JAMKMT010000055.1 <> na Primary Assembly 81819 na scaffold_115 unplaced-scaffold na na JAMKMT010000056.1 <> na Primary Assembly 79854 na scaffold_117 unplaced-scaffold na na JAMKMT010000057.1 <> na Primary Assembly 78281 na scaffold_118 unplaced-scaffold na na JAMKMT010000058.1 <> na Primary Assembly 77519 na scaffold_119 unplaced-scaffold na na JAMKMT010000059.1 <> na Primary Assembly 77000 na scaffold_120 unplaced-scaffold na na JAMKMT010000060.1 <> na Primary Assembly 75279 na scaffold_121 unplaced-scaffold na na JAMKMT010000061.1 <> na Primary Assembly 74814 na scaffold_124 unplaced-scaffold na na JAMKMT010000062.1 <> na Primary Assembly 71647 na scaffold_125 unplaced-scaffold na na JAMKMT010000063.1 <> na Primary Assembly 69493 na scaffold_126 unplaced-scaffold na na JAMKMT010000064.1 <> na Primary Assembly 69005 na scaffold_127 unplaced-scaffold na na JAMKMT010000065.1 <> na Primary Assembly 69000 na scaffold_129 unplaced-scaffold na na JAMKMT010000066.1 <> na Primary Assembly 64585 na scaffold_130 unplaced-scaffold na na JAMKMT010000067.1 <> na Primary Assembly 64011 na scaffold_131 unplaced-scaffold na na JAMKMT010000068.1 <> na Primary Assembly 63000 na scaffold_132 unplaced-scaffold na na JAMKMT010000069.1 <> na Primary Assembly 62809 na scaffold_135 unplaced-scaffold na na JAMKMT010000070.1 <> na Primary Assembly 56000 na scaffold_136 unplaced-scaffold na na JAMKMT010000071.1 <> na Primary Assembly 55896 na scaffold_137 unplaced-scaffold na na JAMKMT010000072.1 <> na Primary Assembly 54090 na scaffold_138 unplaced-scaffold na na JAMKMT010000073.1 <> na Primary Assembly 52459 na scaffold_141 unplaced-scaffold na na JAMKMT010000074.1 <> na Primary Assembly 49432 na scaffold_143 unplaced-scaffold na na JAMKMT010000075.1 <> na Primary Assembly 45327 na scaffold_145 unplaced-scaffold na na JAMKMT010000076.1 <> na Primary Assembly 42772 na scaffold_146 unplaced-scaffold na na JAMKMT010000077.1 <> na Primary Assembly 42396 na scaffold_147 unplaced-scaffold na na JAMKMT010000078.1 <> na Primary Assembly 41676 na scaffold_148 unplaced-scaffold na na JAMKMT010000079.1 <> na Primary Assembly 41540 na scaffold_149 unplaced-scaffold na na JAMKMT010000080.1 <> na Primary Assembly 35376 na scaffold_150 unplaced-scaffold na na JAMKMT010000081.1 <> na Primary Assembly 35000 na scaffold_151 unplaced-scaffold na na JAMKMT010000082.1 <> na Primary Assembly 34000 na scaffold_152 unplaced-scaffold na na JAMKMT010000083.1 <> na Primary Assembly 33794 na scaffold_153 unplaced-scaffold na na JAMKMT010000084.1 <> na Primary Assembly 33599 na scaffold_156 unplaced-scaffold na na JAMKMT010000085.1 <> na Primary Assembly 30768 na scaffold_157 unplaced-scaffold na na JAMKMT010000086.1 <> na Primary Assembly 28562 na scaffold_159 unplaced-scaffold na na JAMKMT010000087.1 <> na Primary Assembly 26138 na scaffold_160 unplaced-scaffold na na JAMKMT010000088.1 <> na Primary Assembly 25471 na scaffold_161 unplaced-scaffold na na JAMKMT010000089.1 <> na Primary Assembly 25267 na scaffold_162 unplaced-scaffold na na JAMKMT010000090.1 <> na Primary Assembly 25245 na scaffold_163 unplaced-scaffold na na JAMKMT010000091.1 <> na Primary Assembly 24712 na scaffold_164 unplaced-scaffold na na JAMKMT010000092.1 <> na Primary Assembly 23706 na scaffold_165 unplaced-scaffold na na JAMKMT010000093.1 <> na Primary Assembly 23060 na scaffold_166 unplaced-scaffold na na JAMKMT010000094.1 <> na Primary Assembly 22792 na scaffold_167 unplaced-scaffold na na JAMKMT010000095.1 <> na Primary Assembly 22621 na scaffold_169 unplaced-scaffold na na JAMKMT010000096.1 <> na Primary Assembly 21627 na scaffold_170 unplaced-scaffold na na JAMKMT010000097.1 <> na Primary Assembly 20719 na scaffold_171 unplaced-scaffold na na JAMKMT010000098.1 <> na Primary Assembly 20538 na scaffold_172 unplaced-scaffold na na JAMKMT010000099.1 <> na Primary Assembly 20386 na scaffold_173 unplaced-scaffold na na JAMKMT010000100.1 <> na Primary Assembly 20198 na scaffold_174 unplaced-scaffold na na JAMKMT010000101.1 <> na Primary Assembly 19936 na scaffold_175 unplaced-scaffold na na JAMKMT010000102.1 <> na Primary Assembly 19346 na scaffold_176 unplaced-scaffold na na JAMKMT010000103.1 <> na Primary Assembly 18640 na scaffold_177 unplaced-scaffold na na JAMKMT010000104.1 <> na Primary Assembly 17711 na scaffold_178 unplaced-scaffold na na JAMKMT010000105.1 <> na Primary Assembly 17702 na scaffold_179 unplaced-scaffold na na JAMKMT010000106.1 <> na Primary Assembly 16175 na scaffold_180 unplaced-scaffold na na JAMKMT010000107.1 <> na Primary Assembly 15812 na scaffold_181 unplaced-scaffold na na JAMKMT010000108.1 <> na Primary Assembly 13000 na scaffold_182 unplaced-scaffold na na JAMKMT010000109.1 <> na Primary Assembly 11111 na scaffold_183 unplaced-scaffold na na JAMKMT010000110.1 <> na Primary Assembly 1000 na