# Assembly name: mThoBot1.0.a # Organism name: Thomomys bottae (Botta's pocket gopher) # Infraspecific name: ecotype=bottae # Isolate: MVZ:Mamm:240275 # Sex: male # Taxid: 10013 # BioSample: SAMN29044214 # BioProject: PRJNA851165 # Submitter: UCLA # Date: 2022-08-31 # Assembly type: alternate-pseudohaplotype # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JANJXW01 # Assembly method: HiFiasm v. 0.16.1-r375; SALSA v. 2 # Expected final version: no # Genome coverage: 28x # Sequencing technology: PacBio Sequel; Illumina NovaSeq; Dovetails OmniC # GenBank assembly accession: GCA_024803775.1 # Linked assembly: GCA_024803745.1 (principal pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_024805685.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SCAF_1 unplaced-scaffold na na JANJXW010000002.1 <> na Primary Assembly 109030123 na SCAF_10 unplaced-scaffold na na JANJXW010000011.1 <> na Primary Assembly 67325880 na SCAF_100 unplaced-scaffold na na JANJXW010000100.1 <> na Primary Assembly 4193350 na SCAF_1000 unplaced-scaffold na na JANJXW010001000.1 <> na Primary Assembly 317946 na SCAF_1001 unplaced-scaffold na na JANJXW010001001.1 <> na Primary Assembly 317657 na SCAF_1002 unplaced-scaffold na na JANJXW010001002.1 <> na Primary Assembly 316997 na SCAF_1003 unplaced-scaffold na na JANJXW010001003.1 <> na Primary Assembly 316937 na SCAF_1004 unplaced-scaffold na na JANJXW010001004.1 <> na Primary Assembly 316733 na SCAF_1005 unplaced-scaffold na na JANJXW010001005.1 <> na Primary Assembly 314519 na SCAF_1006 unplaced-scaffold na na JANJXW010001006.1 <> na Primary Assembly 313498 na SCAF_1007 unplaced-scaffold na na JANJXW010001007.1 <> na Primary Assembly 313335 na SCAF_1008 unplaced-scaffold na na JANJXW010001008.1 <> na Primary Assembly 313071 na SCAF_1009 unplaced-scaffold na na JANJXW010001009.1 <> na Primary Assembly 312835 na SCAF_101 unplaced-scaffold na na JANJXW010000101.1 <> na Primary Assembly 4185912 na SCAF_1010 unplaced-scaffold na na JANJXW010001010.1 <> na Primary Assembly 312208 na SCAF_1011 unplaced-scaffold na na JANJXW010001011.1 <> na Primary Assembly 311873 na SCAF_1012 unplaced-scaffold na na JANJXW010001012.1 <> na Primary Assembly 311682 na SCAF_1013 unplaced-scaffold na na JANJXW010001013.1 <> na Primary Assembly 311456 na SCAF_1014 unplaced-scaffold na na JANJXW010001014.1 <> na Primary Assembly 311306 na SCAF_1015 unplaced-scaffold na na JANJXW010001015.1 <> na Primary Assembly 310703 na SCAF_1016 unplaced-scaffold na na JANJXW010001016.1 <> na Primary Assembly 310454 na SCAF_1017 unplaced-scaffold na na JANJXW010001017.1 <> na Primary Assembly 310369 na SCAF_1018 unplaced-scaffold na na JANJXW010001018.1 <> na Primary Assembly 309469 na SCAF_1019 unplaced-scaffold na na JANJXW010001019.1 <> na Primary Assembly 309396 na SCAF_102 unplaced-scaffold na na JANJXW010000102.1 <> na Primary Assembly 4065570 na SCAF_1020 unplaced-scaffold na na JANJXW010001020.1 <> na Primary Assembly 308119 na SCAF_1021 unplaced-scaffold na na JANJXW010001021.1 <> na Primary Assembly 307594 na SCAF_1022 unplaced-scaffold na na JANJXW010001022.1 <> na Primary Assembly 307385 na SCAF_1023 unplaced-scaffold na na JANJXW010001023.1 <> na Primary Assembly 306503 na SCAF_1024 unplaced-scaffold na na JANJXW010001024.1 <> na Primary Assembly 306256 na SCAF_1025 unplaced-scaffold na na JANJXW010001025.1 <> na Primary Assembly 306040 na SCAF_1026 unplaced-scaffold na na JANJXW010001026.1 <> na Primary Assembly 305658 na SCAF_1027 unplaced-scaffold na na JANJXW010001027.1 <> na Primary Assembly 305558 na SCAF_1028 unplaced-scaffold na na JANJXW010001028.1 <> na Primary Assembly 305524 na SCAF_1029 unplaced-scaffold na na JANJXW010001029.1 <> na Primary Assembly 305408 na SCAF_103 unplaced-scaffold na na JANJXW010000103.1 <> na Primary Assembly 4035277 na SCAF_1030 unplaced-scaffold na na JANJXW010001030.1 <> na Primary Assembly 305387 na SCAF_1031 unplaced-scaffold na na JANJXW010001031.1 <> na Primary Assembly 304494 na SCAF_1032 unplaced-scaffold na na JANJXW010001032.1 <> na Primary Assembly 304231 na SCAF_1033 unplaced-scaffold na na JANJXW010001033.1 <> na Primary Assembly 303998 na SCAF_1034 unplaced-scaffold na na JANJXW010001034.1 <> na Primary Assembly 303610 na SCAF_1035 unplaced-scaffold na na JANJXW010001035.1 <> na Primary Assembly 303060 na SCAF_1036 unplaced-scaffold na na JANJXW010001036.1 <> na Primary Assembly 303016 na SCAF_1037 unplaced-scaffold na na JANJXW010001037.1 <> na Primary Assembly 302714 na SCAF_1038 unplaced-scaffold na na JANJXW010001038.1 <> na Primary Assembly 302697 na SCAF_1039 unplaced-scaffold na na JANJXW010001039.1 <> na Primary Assembly 301790 na SCAF_104 unplaced-scaffold na na JANJXW010000104.1 <> na Primary Assembly 4023015 na SCAF_1040 unplaced-scaffold na na JANJXW010001040.1 <> na Primary Assembly 300272 na SCAF_1041 unplaced-scaffold na na JANJXW010001041.1 <> na Primary Assembly 300253 na SCAF_1042 unplaced-scaffold na na JANJXW010001042.1 <> na Primary Assembly 300038 na SCAF_1043 unplaced-scaffold na na JANJXW010001043.1 <> na Primary Assembly 298611 na SCAF_1044 unplaced-scaffold na na JANJXW010001044.1 <> na Primary Assembly 295825 na SCAF_1045 unplaced-scaffold na na JANJXW010001045.1 <> na Primary Assembly 295418 na SCAF_1046 unplaced-scaffold na na JANJXW010001046.1 <> na Primary Assembly 294818 na SCAF_1047 unplaced-scaffold na na JANJXW010001047.1 <> na Primary Assembly 294336 na SCAF_1048 unplaced-scaffold na na JANJXW010001048.1 <> na Primary Assembly 293783 na SCAF_1049 unplaced-scaffold na na JANJXW010001049.1 <> na Primary Assembly 293503 na SCAF_105 unplaced-scaffold na na JANJXW010000105.1 <> na Primary Assembly 3951822 na SCAF_1050 unplaced-scaffold na na JANJXW010001050.1 <> na Primary Assembly 293427 na SCAF_1051 unplaced-scaffold na na JANJXW010001051.1 <> na Primary Assembly 293115 na SCAF_1052 unplaced-scaffold na na JANJXW010001052.1 <> na Primary Assembly 292755 na SCAF_1053 unplaced-scaffold na na JANJXW010001053.1 <> na Primary Assembly 292680 na SCAF_1054 unplaced-scaffold na na JANJXW010001054.1 <> na Primary Assembly 292155 na SCAF_1055 unplaced-scaffold na na JANJXW010001055.1 <> na Primary Assembly 292067 na SCAF_1056 unplaced-scaffold na na JANJXW010001056.1 <> na Primary Assembly 291732 na SCAF_1057 unplaced-scaffold na na JANJXW010001057.1 <> na Primary Assembly 291664 na SCAF_1058 unplaced-scaffold na na JANJXW010001058.1 <> na Primary Assembly 290979 na SCAF_1059 unplaced-scaffold na na JANJXW010001059.1 <> na Primary Assembly 290973 na SCAF_106 unplaced-scaffold na na JANJXW010000106.1 <> na Primary Assembly 3924581 na SCAF_1060 unplaced-scaffold na na JANJXW010001060.1 <> na Primary Assembly 290492 na SCAF_1061 unplaced-scaffold na na JANJXW010001061.1 <> na Primary Assembly 289312 na SCAF_1062 unplaced-scaffold na na JANJXW010001062.1 <> na Primary Assembly 289295 na SCAF_1063 unplaced-scaffold na na JANJXW010001063.1 <> na Primary Assembly 289195 na SCAF_1064 unplaced-scaffold na na JANJXW010001064.1 <> na Primary Assembly 287217 na SCAF_1065 unplaced-scaffold na na JANJXW010001065.1 <> na Primary Assembly 286168 na SCAF_1066 unplaced-scaffold na na JANJXW010001066.1 <> na Primary Assembly 285402 na SCAF_1067 unplaced-scaffold na na JANJXW010001067.1 <> na Primary Assembly 285361 na SCAF_1068 unplaced-scaffold na na JANJXW010001068.1 <> na Primary Assembly 284856 na SCAF_1069 unplaced-scaffold na na JANJXW010001069.1 <> na Primary Assembly 284718 na SCAF_107 unplaced-scaffold na na JANJXW010000107.1 <> na Primary Assembly 3914090 na SCAF_1070 unplaced-scaffold na na JANJXW010001070.1 <> na Primary Assembly 284651 na SCAF_1071 unplaced-scaffold na na JANJXW010001071.1 <> na Primary Assembly 284581 na SCAF_1072 unplaced-scaffold na na JANJXW010001072.1 <> na Primary Assembly 284143 na SCAF_1073 unplaced-scaffold na na JANJXW010001073.1 <> na Primary Assembly 283962 na SCAF_1074 unplaced-scaffold na na JANJXW010001074.1 <> na Primary Assembly 283190 na SCAF_1075 unplaced-scaffold na na JANJXW010001075.1 <> na Primary Assembly 282927 na SCAF_1076 unplaced-scaffold na na JANJXW010001076.1 <> na Primary Assembly 279480 na SCAF_1077 unplaced-scaffold na na JANJXW010001077.1 <> na Primary Assembly 279407 na SCAF_1078 unplaced-scaffold na na JANJXW010001078.1 <> na Primary Assembly 278409 na SCAF_1079 unplaced-scaffold na na JANJXW010001079.1 <> na Primary Assembly 277947 na SCAF_108 unplaced-scaffold na na JANJXW010000108.1 <> na Primary Assembly 3841715 na SCAF_1080 unplaced-scaffold na na JANJXW010001080.1 <> na Primary Assembly 277765 na SCAF_1081 unplaced-scaffold na na JANJXW010001081.1 <> na Primary Assembly 277696 na SCAF_1082 unplaced-scaffold na na JANJXW010001082.1 <> na Primary Assembly 276075 na SCAF_1083 unplaced-scaffold na na JANJXW010001083.1 <> na Primary Assembly 275380 na SCAF_1084 unplaced-scaffold na na JANJXW010001084.1 <> na Primary Assembly 275145 na SCAF_1085 unplaced-scaffold na na JANJXW010001085.1 <> na Primary Assembly 274386 na SCAF_1086 unplaced-scaffold na na JANJXW010001086.1 <> na Primary Assembly 274235 na SCAF_1087 unplaced-scaffold na na JANJXW010001087.1 <> na Primary Assembly 273796 na SCAF_1088 unplaced-scaffold na na JANJXW010001088.1 <> na Primary Assembly 273793 na SCAF_1089 unplaced-scaffold na na JANJXW010001089.1 <> na Primary Assembly 273294 na SCAF_109 unplaced-scaffold na na JANJXW010000109.1 <> na Primary Assembly 3825892 na SCAF_1090 unplaced-scaffold na na JANJXW010001090.1 <> na Primary Assembly 271630 na SCAF_1091 unplaced-scaffold na na JANJXW010001091.1 <> na Primary Assembly 271607 na SCAF_1092 unplaced-scaffold na na JANJXW010001092.1 <> na Primary Assembly 270126 na SCAF_1093 unplaced-scaffold na na JANJXW010001093.1 <> na Primary Assembly 269070 na SCAF_1094 unplaced-scaffold na na JANJXW010001094.1 <> na Primary Assembly 268388 na SCAF_1095 unplaced-scaffold na na JANJXW010001095.1 <> na Primary Assembly 268356 na SCAF_1096 unplaced-scaffold na na JANJXW010001096.1 <> na Primary Assembly 267421 na SCAF_1097 unplaced-scaffold na na JANJXW010001097.1 <> na Primary Assembly 267208 na SCAF_1098 unplaced-scaffold na na JANJXW010001098.1 <> na Primary Assembly 267148 na SCAF_1099 unplaced-scaffold na na JANJXW010001099.1 <> na Primary Assembly 266630 na SCAF_11 unplaced-scaffold na na JANJXW010000012.1 <> na Primary Assembly 64049714 na SCAF_110 unplaced-scaffold na na JANJXW010000110.1 <> na Primary Assembly 3824499 na SCAF_1100 unplaced-scaffold na na JANJXW010001100.1 <> na Primary Assembly 266179 na SCAF_1101 unplaced-scaffold na na JANJXW010001101.1 <> na Primary Assembly 265732 na SCAF_1102 unplaced-scaffold na na JANJXW010001102.1 <> na Primary Assembly 265527 na SCAF_1103 unplaced-scaffold na na JANJXW010001103.1 <> na Primary Assembly 265001 na SCAF_1104 unplaced-scaffold na na JANJXW010001104.1 <> na Primary Assembly 264556 na SCAF_1105 unplaced-scaffold na na JANJXW010001105.1 <> na Primary Assembly 263728 na SCAF_1106 unplaced-scaffold na na JANJXW010001106.1 <> na Primary Assembly 263615 na SCAF_1107 unplaced-scaffold na na JANJXW010001107.1 <> na Primary Assembly 263084 na SCAF_1108 unplaced-scaffold na na JANJXW010001108.1 <> na Primary Assembly 261612 na SCAF_1109 unplaced-scaffold na na JANJXW010001109.1 <> na Primary Assembly 261366 na SCAF_111 unplaced-scaffold na na JANJXW010000111.1 <> na Primary Assembly 3811561 na SCAF_1110 unplaced-scaffold na na JANJXW010001110.1 <> na Primary Assembly 261192 na SCAF_1111 unplaced-scaffold na na JANJXW010001111.1 <> na Primary Assembly 261127 na SCAF_1112 unplaced-scaffold na na JANJXW010001112.1 <> na Primary Assembly 261109 na SCAF_1113 unplaced-scaffold na na JANJXW010001113.1 <> na Primary Assembly 260366 na SCAF_1114 unplaced-scaffold na na JANJXW010001114.1 <> na Primary Assembly 259845 na SCAF_1115 unplaced-scaffold na na JANJXW010001115.1 <> na Primary Assembly 259762 na SCAF_1116 unplaced-scaffold na na JANJXW010001116.1 <> na Primary Assembly 259746 na SCAF_1117 unplaced-scaffold na na JANJXW010001117.1 <> na Primary Assembly 259636 na SCAF_1118 unplaced-scaffold na na JANJXW010001118.1 <> na Primary Assembly 259055 na SCAF_1119 unplaced-scaffold na na JANJXW010001119.1 <> na Primary Assembly 258447 na SCAF_112 unplaced-scaffold na na JANJXW010000112.1 <> na Primary Assembly 3789828 na SCAF_1120 unplaced-scaffold na na JANJXW010001120.1 <> na Primary Assembly 258007 na SCAF_1121 unplaced-scaffold na na JANJXW010001121.1 <> na Primary Assembly 257237 na SCAF_1122 unplaced-scaffold na na JANJXW010001122.1 <> na Primary Assembly 257154 na SCAF_1123 unplaced-scaffold na na JANJXW010001123.1 <> na Primary Assembly 256793 na SCAF_1124 unplaced-scaffold na na JANJXW010001124.1 <> na Primary Assembly 256053 na SCAF_1125 unplaced-scaffold na na JANJXW010001125.1 <> na Primary Assembly 256028 na SCAF_1126 unplaced-scaffold na na JANJXW010001126.1 <> na Primary Assembly 255942 na SCAF_1127 unplaced-scaffold na na JANJXW010001127.1 <> na Primary Assembly 255698 na SCAF_1128 unplaced-scaffold na na JANJXW010001128.1 <> na Primary Assembly 255135 na SCAF_1129 unplaced-scaffold na na JANJXW010001129.1 <> na Primary Assembly 255029 na SCAF_113 unplaced-scaffold na na JANJXW010000113.1 <> na Primary Assembly 3722853 na SCAF_1130 unplaced-scaffold na na JANJXW010001130.1 <> na Primary Assembly 254668 na SCAF_1131 unplaced-scaffold na na JANJXW010001131.1 <> na Primary Assembly 254493 na SCAF_1132 unplaced-scaffold na na JANJXW010001132.1 <> na Primary Assembly 254477 na SCAF_1133 unplaced-scaffold na na JANJXW010001133.1 <> na Primary Assembly 254025 na SCAF_1134 unplaced-scaffold na na JANJXW010001134.1 <> na Primary Assembly 252910 na SCAF_1135 unplaced-scaffold na na JANJXW010001135.1 <> na Primary Assembly 252715 na SCAF_1136 unplaced-scaffold na na JANJXW010001136.1 <> na Primary Assembly 252566 na SCAF_1137 unplaced-scaffold na na JANJXW010001137.1 <> na Primary Assembly 251655 na SCAF_1138 unplaced-scaffold na na JANJXW010001138.1 <> na Primary Assembly 251607 na SCAF_1139 unplaced-scaffold na na JANJXW010001139.1 <> na Primary Assembly 251366 na SCAF_114 unplaced-scaffold na na JANJXW010000114.1 <> na Primary Assembly 3721857 na SCAF_1140 unplaced-scaffold na na JANJXW010001140.1 <> na Primary Assembly 251365 na SCAF_1141 unplaced-scaffold na na JANJXW010001141.1 <> na Primary Assembly 250837 na SCAF_1142 unplaced-scaffold na na JANJXW010001142.1 <> na Primary Assembly 250793 na SCAF_1143 unplaced-scaffold na na JANJXW010001143.1 <> na Primary Assembly 250572 na SCAF_1144 unplaced-scaffold na na JANJXW010001144.1 <> na Primary Assembly 250538 na SCAF_1145 unplaced-scaffold na na JANJXW010001145.1 <> na Primary Assembly 250253 na SCAF_1146 unplaced-scaffold na na JANJXW010001146.1 <> na Primary Assembly 250133 na SCAF_1147 unplaced-scaffold na na JANJXW010001147.1 <> na Primary Assembly 250100 na SCAF_1148 unplaced-scaffold na na JANJXW010001148.1 <> na Primary Assembly 249973 na SCAF_1149 unplaced-scaffold na na JANJXW010001149.1 <> na Primary Assembly 249649 na SCAF_115 unplaced-scaffold na na JANJXW010000115.1 <> na Primary Assembly 3696565 na SCAF_1150 unplaced-scaffold na na JANJXW010001150.1 <> na Primary Assembly 249450 na SCAF_1151 unplaced-scaffold na na JANJXW010001151.1 <> na Primary Assembly 249035 na SCAF_1152 unplaced-scaffold na na JANJXW010001152.1 <> na Primary Assembly 248628 na SCAF_1153 unplaced-scaffold na na JANJXW010001153.1 <> na Primary Assembly 248611 na SCAF_1154 unplaced-scaffold na na JANJXW010001154.1 <> na Primary Assembly 248164 na SCAF_1155 unplaced-scaffold na na JANJXW010001155.1 <> na Primary Assembly 248061 na SCAF_1156 unplaced-scaffold na na JANJXW010001156.1 <> na Primary Assembly 247549 na SCAF_1157 unplaced-scaffold na na JANJXW010001157.1 <> na Primary Assembly 246646 na SCAF_1158 unplaced-scaffold na na JANJXW010001158.1 <> na Primary Assembly 246436 na SCAF_1159 unplaced-scaffold na na JANJXW010001159.1 <> na Primary Assembly 245751 na SCAF_116 unplaced-scaffold na na JANJXW010000116.1 <> na Primary Assembly 3682713 na SCAF_1160 unplaced-scaffold na na JANJXW010001160.1 <> na Primary Assembly 245741 na SCAF_1161 unplaced-scaffold na na JANJXW010001161.1 <> na Primary Assembly 245368 na SCAF_1162 unplaced-scaffold na na JANJXW010001162.1 <> na Primary Assembly 245216 na SCAF_1163 unplaced-scaffold na na JANJXW010001163.1 <> na Primary Assembly 244651 na SCAF_1164 unplaced-scaffold na na JANJXW010001164.1 <> na Primary Assembly 244216 na SCAF_1165 unplaced-scaffold na na JANJXW010001165.1 <> na Primary Assembly 243653 na SCAF_1166 unplaced-scaffold na na JANJXW010001166.1 <> na Primary Assembly 243635 na SCAF_1167 unplaced-scaffold na na JANJXW010001167.1 <> na Primary Assembly 243511 na SCAF_1168 unplaced-scaffold na na JANJXW010001168.1 <> na Primary Assembly 242846 na SCAF_1169 unplaced-scaffold na na JANJXW010001169.1 <> na Primary Assembly 242178 na SCAF_117 unplaced-scaffold na na JANJXW010000117.1 <> na Primary Assembly 3670967 na SCAF_1170 unplaced-scaffold na na JANJXW010001170.1 <> na Primary Assembly 242068 na SCAF_1171 unplaced-scaffold na na JANJXW010001171.1 <> na Primary Assembly 241282 na SCAF_1172 unplaced-scaffold na na JANJXW010001172.1 <> na Primary Assembly 240686 na SCAF_1173 unplaced-scaffold na na JANJXW010001173.1 <> na Primary Assembly 240362 na SCAF_1174 unplaced-scaffold na na JANJXW010001174.1 <> na Primary Assembly 240267 na SCAF_1175 unplaced-scaffold na na JANJXW010001175.1 <> na Primary Assembly 240257 na SCAF_1176 unplaced-scaffold na na JANJXW010001176.1 <> na Primary Assembly 239925 na SCAF_1177 unplaced-scaffold na na JANJXW010001177.1 <> na Primary Assembly 239797 na SCAF_1178 unplaced-scaffold na na JANJXW010001178.1 <> na Primary Assembly 239368 na SCAF_1179 unplaced-scaffold na na JANJXW010001179.1 <> na Primary Assembly 238885 na SCAF_118 unplaced-scaffold na na JANJXW010000118.1 <> na Primary Assembly 3639297 na SCAF_1180 unplaced-scaffold na na JANJXW010001180.1 <> na Primary Assembly 238159 na SCAF_1181 unplaced-scaffold na na JANJXW010001181.1 <> na Primary Assembly 238156 na SCAF_1182 unplaced-scaffold na na JANJXW010001182.1 <> na Primary Assembly 238119 na SCAF_1183 unplaced-scaffold na na JANJXW010001183.1 <> na Primary Assembly 237952 na SCAF_1184 unplaced-scaffold na na JANJXW010001184.1 <> na Primary Assembly 237638 na SCAF_1185 unplaced-scaffold na na JANJXW010001185.1 <> na Primary Assembly 236957 na SCAF_1186 unplaced-scaffold na na JANJXW010001186.1 <> na Primary Assembly 236618 na SCAF_1187 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