# Assembly name: mMesDen1 primary haplotype # Organism name: Mesoplodon densirostris (Blainville's beaked whale) # Isolate: mMesDen1 # Sex: male # Taxid: 48708 # BioSample: SAMN29828597 # BioProject: PRJNA873668 # Submitter: Vertebrate Genomes Project # Date: 2022-09-19 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JANXIL01 # Assembly method: Hifiasm v. 0.16.1+galaxy1; purge_dups v. 1.2.5+galaxy3; Bionano solve v. 3.7.0+galaxy0; Salsa v. 2.3+galaxy2 # Expected final version: no # Genome coverage: 43.5x # RefSeq category: Representative Genome # GenBank assembly accession: GCA_025265405.1 # RefSeq assembly accession: GCF_025265405.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_025094165.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_025265415.1 GCF_025265415.1 Primary Assembly ## GCF_032146315.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM046080.1 = NC_082661.1 Primary Assembly 247284360 na SUPER_2 assembled-molecule 2 Chromosome CM046081.1 = NC_082662.1 Primary Assembly 193415349 na SUPER_3 assembled-molecule 3 Chromosome CM046082.1 = NC_082663.1 Primary Assembly 185486766 na SUPER_4 assembled-molecule 4 Chromosome CM046083.1 = NC_082664.1 Primary Assembly 184908288 na SUPER_5 assembled-molecule 5 Chromosome CM046084.1 = NC_082665.1 Primary Assembly 155519127 na SUPER_6 assembled-molecule 6 Chromosome CM046085.1 = NC_082666.1 Primary Assembly 136865726 na SUPER_7 assembled-molecule 7 Chromosome CM046086.1 = NC_082667.1 Primary Assembly 125805690 na SUPER_8 assembled-molecule 8 Chromosome CM046087.1 = NC_082668.1 Primary Assembly 117335195 na SUPER_9 assembled-molecule 9 Chromosome CM046088.1 = NC_082669.1 Primary Assembly 114113211 na SUPER_10 assembled-molecule 10 Chromosome CM046089.1 = NC_082670.1 Primary Assembly 111292810 na SUPER_11 assembled-molecule 11 Chromosome CM046090.1 = NC_082671.1 Primary Assembly 106130936 na SUPER_12 assembled-molecule 12 Chromosome CM046091.1 = NC_082672.1 Primary Assembly 104700920 na SUPER_13 assembled-molecule 13 Chromosome CM046092.1 = NC_082673.1 Primary Assembly 93362332 na SUPER_14 assembled-molecule 14 Chromosome CM046093.1 = NC_082674.1 Primary Assembly 91985674 na SUPER_15 assembled-molecule 15 Chromosome CM046094.1 = NC_082675.1 Primary Assembly 91196782 na SUPER_16 assembled-molecule 16 Chromosome CM046095.1 = NC_082676.1 Primary Assembly 88733150 na SUPER_17 assembled-molecule 17 Chromosome CM046096.1 = NC_082677.1 Primary Assembly 78597266 na SUPER_18 assembled-molecule 18 Chromosome CM046097.1 = NC_082678.1 Primary Assembly 67049709 na SUPER_19 assembled-molecule 19 Chromosome CM046098.1 = NC_082679.1 Primary Assembly 66567213 na SUPER_20 assembled-molecule 20 Chromosome CM046099.1 = NC_082680.1 Primary Assembly 45032744 na SUPER_X assembled-molecule X Chromosome CM046100.1 = NC_082681.1 Primary Assembly 142130375 na SUPER_Y assembled-molecule Y Chromosome CM046101.1 = NC_082682.1 Primary Assembly 12710753 na SUPER_Y_unloc_1 unlocalized-scaffold Y Chromosome JANXIL010000023.1 = NW_026778236.1 Primary Assembly 6823000 na SUPER_Y_unloc_2 unlocalized-scaffold Y Chromosome JANXIL010000024.1 = NW_026778237.1 Primary Assembly 2935457 na scaffold_105 unplaced-scaffold na na JANXIL010000025.1 = NW_026778191.1 Primary Assembly 425478 na scaffold_61 unplaced-scaffold na na JANXIL010000026.1 = NW_026778205.1 Primary Assembly 3109020 na scaffold_57 unplaced-scaffold na na JANXIL010000027.1 = NW_026778202.1 Primary Assembly 3509720 na scaffold_69 unplaced-scaffold na na JANXIL010000028.1 = NW_026778210.1 Primary Assembly 1948536 na scaffold_95 unplaced-scaffold na na JANXIL010000029.1 = NW_026778231.1 Primary Assembly 627960 na scaffold_83 unplaced-scaffold na na JANXIL010000030.1 = NW_026778221.1 Primary Assembly 1304469 na scaffold_104 unplaced-scaffold na na JANXIL010000031.1 = NW_026778190.1 Primary Assembly 426996 na scaffold_85 unplaced-scaffold na na JANXIL010000032.1 = NW_026778223.1 Primary Assembly 1274216 na scaffold_35 unplaced-scaffold na na JANXIL010000033.1 = NW_026778195.1 Primary Assembly 16191540 na scaffold_75 unplaced-scaffold na na JANXIL010000034.1 = NW_026778215.1 Primary Assembly 1600921 na scaffold_44 unplaced-scaffold na na JANXIL010000035.1 = NW_026778198.1 Primary Assembly 5778029 na scaffold_37 unplaced-scaffold na na JANXIL010000036.1 = NW_026778196.1 Primary Assembly 11979308 na scaffold_92 unplaced-scaffold na na JANXIL010000037.1 = NW_026778228.1 Primary Assembly 828573 na scaffold_102 unplaced-scaffold na na JANXIL010000038.1 = NW_026778189.1 Primary Assembly 491121 na scaffold_71 unplaced-scaffold na na JANXIL010000039.1 = NW_026778212.1 Primary Assembly 1849451 na scaffold_68 unplaced-scaffold na na JANXIL010000040.1 = NW_026778209.1 Primary Assembly 1999730 na scaffold_66 unplaced-scaffold na na JANXIL010000041.1 = NW_026778208.1 Primary Assembly 2120816 na scaffold_77 unplaced-scaffold na na JANXIL010000042.1 = NW_026778217.1 Primary Assembly 1490752 na scaffold_74 unplaced-scaffold na na JANXIL010000043.1 = NW_026778214.1 Primary Assembly 1774929 na scaffold_97 unplaced-scaffold na na JANXIL010000044.1 = NW_026778233.1 Primary Assembly 593365 na scaffold_87 unplaced-scaffold na na JANXIL010000045.1 = NW_026778224.1 Primary Assembly 1206572 na scaffold_64 unplaced-scaffold na na JANXIL010000046.1 = NW_026778206.1 Primary Assembly 2440170 na scaffold_109 unplaced-scaffold na na JANXIL010000047.1 = NW_026778194.1 Primary Assembly 49122 na scaffold_65 unplaced-scaffold na na JANXIL010000048.1 = NW_026778207.1 Primary Assembly 2390721 na scaffold_72 unplaced-scaffold na na JANXIL010000049.1 = NW_026778213.1 Primary Assembly 1821978 na scaffold_96 unplaced-scaffold na na JANXIL010000050.1 = NW_026778232.1 Primary Assembly 610922 na scaffold_45 unplaced-scaffold na na JANXIL010000051.1 = NW_026778199.1 Primary Assembly 5642560 na scaffold_107 unplaced-scaffold na na JANXIL010000052.1 = NW_026778193.1 Primary Assembly 345925 na scaffold_98 unplaced-scaffold na na JANXIL010000053.1 = NW_026778234.1 Primary Assembly 565176 na scaffold_84 unplaced-scaffold na na JANXIL010000054.1 = NW_026778222.1 Primary Assembly 1301310 na scaffold_100 unplaced-scaffold na na JANXIL010000055.1 = NW_026778187.1 Primary Assembly 538523 na scaffold_93 unplaced-scaffold na na JANXIL010000056.1 = NW_026778229.1 Primary Assembly 728972 na scaffold_99 unplaced-scaffold na na JANXIL010000057.1 = NW_026778235.1 Primary Assembly 555423 na scaffold_78 unplaced-scaffold na na JANXIL010000058.1 = NW_026778218.1 Primary Assembly 1432556 na scaffold_76 unplaced-scaffold na na JANXIL010000059.1 = NW_026778216.1 Primary Assembly 1567304 na scaffold_41 unplaced-scaffold na na JANXIL010000060.1 = NW_026778197.1 Primary Assembly 8249701 na scaffold_101 unplaced-scaffold na na JANXIL010000061.1 = NW_026778188.1 Primary Assembly 524639 na scaffold_58 unplaced-scaffold na na JANXIL010000062.1 = NW_026778203.1 Primary Assembly 3315431 na scaffold_88 unplaced-scaffold na na JANXIL010000063.1 = NW_026778225.1 Primary Assembly 1175264 na scaffold_89 unplaced-scaffold na na JANXIL010000064.1 = NW_026778226.1 Primary Assembly 980656 na scaffold_81 unplaced-scaffold na na JANXIL010000065.1 = NW_026778219.1 Primary Assembly 1326816 na scaffold_91 unplaced-scaffold na na JANXIL010000066.1 = NW_026778227.1 Primary Assembly 882393 na scaffold_46 unplaced-scaffold na na JANXIL010000067.1 = NW_026778200.1 Primary Assembly 5299376 na scaffold_94 unplaced-scaffold na na JANXIL010000068.1 = NW_026778230.1 Primary Assembly 644474 na scaffold_82 unplaced-scaffold na na JANXIL010000069.1 = NW_026778220.1 Primary Assembly 1306085 na scaffold_56 unplaced-scaffold na na JANXIL010000070.1 = NW_026778201.1 Primary Assembly 3674953 na scaffold_59 unplaced-scaffold na na JANXIL010000071.1 = NW_026778204.1 Primary Assembly 3196458 na scaffold_70 unplaced-scaffold na na JANXIL010000072.1 = NW_026778211.1 Primary Assembly 1895516 na scaffold_106 unplaced-scaffold na na JANXIL010000073.1 = NW_026778192.1 Primary Assembly 398372 na MT assembled-molecule MT Mitochondrion na <> NC_021974.2 non-nuclear 16347 na