# Assembly name: fPanHyp1.pri # Organism name: Pangasianodon hypophthalmus (striped catfish) # Isolate: fPanHyp1 # Taxid: 310915 # BioSample: SAMN32348883 # BioProject: PRJNA914796 # Submitter: Vertebrate Genomes Project # Date: 2022-12-28 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAPZKW01 # Assembly method: HiFiasm v. 0.15.3; purge_dups v. 1.2.3; Bionano Solve v. 3.6.1_11162020; salsa v. 2.2 # Expected final version: no # Genome coverage: 23.9x # Sequencing technology: PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C v2 # RefSeq category: Representative Genome # GenBank assembly accession: GCA_027358585.1 # RefSeq assembly accession: GCF_027358585.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_027382375.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_027358765.1 GCF_027358765.1 Primary Assembly ## GCA_027358795.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM050107.1 = NC_069710.1 Primary Assembly 36215093 na SUPER_2 assembled-molecule 2 Chromosome CM050108.1 = NC_069711.1 Primary Assembly 35884135 na SUPER_3 assembled-molecule 3 Chromosome CM050109.1 = NC_069712.1 Primary Assembly 34651177 na SUPER_4 assembled-molecule 4 Chromosome CM050110.1 = NC_069713.1 Primary Assembly 33633996 na SUPER_5 assembled-molecule 5 Chromosome CM050111.1 = NC_069714.1 Primary Assembly 32689788 na SUPER_6 assembled-molecule 6 Chromosome CM050112.1 = NC_069715.1 Primary Assembly 31385910 na SUPER_7 assembled-molecule 7 Chromosome CM050113.1 = NC_069716.1 Primary Assembly 30461503 na SUPER_8 assembled-molecule 8 Chromosome CM050114.1 = NC_069717.1 Primary Assembly 30566609 na SUPER_9 assembled-molecule 9 Chromosome CM050115.1 = NC_069718.1 Primary Assembly 30462587 na SUPER_10 assembled-molecule 10 Chromosome CM050116.1 = NC_069719.1 Primary Assembly 29687117 na SUPER_11 assembled-molecule 11 Chromosome CM050117.1 = NC_069720.1 Primary Assembly 27660928 na SUPER_12 assembled-molecule 12 Chromosome CM050118.1 = NC_069721.1 Primary Assembly 26523830 na SUPER_13 assembled-molecule 13 Chromosome CM050119.1 = NC_069722.1 Primary Assembly 26090430 na SUPER_14 assembled-molecule 14 Chromosome CM050120.1 = NC_069723.1 Primary Assembly 26128932 na SUPER_15 assembled-molecule 15 Chromosome CM050121.1 = NC_069724.1 Primary Assembly 25711196 na SUPER_16 assembled-molecule 16 Chromosome CM050122.1 = NC_069725.1 Primary Assembly 25658198 na SUPER_17 assembled-molecule 17 Chromosome CM050123.1 = NC_069726.1 Primary Assembly 25293430 na SUPER_18 assembled-molecule 18 Chromosome CM050124.1 = NC_069727.1 Primary Assembly 21526667 na SUPER_19 assembled-molecule 19 Chromosome CM050125.1 = NC_069728.1 Primary Assembly 22358242 na SUPER_20 assembled-molecule 20 Chromosome CM050126.1 = NC_069729.1 Primary Assembly 22075107 na SUPER_21 assembled-molecule 21 Chromosome CM050127.1 = NC_069730.1 Primary Assembly 21424013 na SUPER_22 assembled-molecule 22 Chromosome CM050128.1 = NC_069731.1 Primary Assembly 21074575 na SUPER_23 assembled-molecule 23 Chromosome CM050129.1 = NC_069732.1 Primary Assembly 20457907 na SUPER_24 assembled-molecule 24 Chromosome CM050130.1 = NC_069733.1 Primary Assembly 20479702 na SUPER_25 assembled-molecule 25 Chromosome CM050131.1 = NC_069734.1 Primary Assembly 19906963 na SUPER_26 assembled-molecule 26 Chromosome CM050132.1 = NC_069735.1 Primary Assembly 20408546 na SUPER_27 assembled-molecule 27 Chromosome CM050133.1 = NC_069736.1 Primary Assembly 19812572 na SUPER_28 assembled-molecule 28 Chromosome CM050134.1 = NC_069737.1 Primary Assembly 17227488 na SUPER_29 assembled-molecule 29 Chromosome CM050135.1 = NC_069738.1 Primary Assembly 16054918 na SUPER_30 assembled-molecule 30 Chromosome CM050136.1 = NC_069739.1 Primary Assembly 12895015 na SUPER_9_unloc_1 unlocalized-scaffold 9 Chromosome JAPZKW010000009.1 = NW_026514200.1 Primary Assembly 67076 na SUPER_9_unloc_2 unlocalized-scaffold 9 Chromosome JAPZKW010000010.1 = NW_026514201.1 Primary Assembly 43066 na scaffold_100_ctg1 unplaced-scaffold na na JAPZKW010000034.1 = NW_026514202.1 Primary Assembly 32595 na scaffold_103_ctg1 unplaced-scaffold na na JAPZKW010000035.1 = NW_026514203.1 Primary Assembly 31687 na scaffold_107_ctg1 unplaced-scaffold na na JAPZKW010000036.1 = NW_026514204.1 Primary Assembly 30735 na scaffold_108_ctg1 unplaced-scaffold na na JAPZKW010000037.1 = NW_026514205.1 Primary Assembly 27531 na scaffold_109_ctg1 unplaced-scaffold na na JAPZKW010000038.1 = NW_026514206.1 Primary Assembly 25655 na scaffold_110_ctg1 unplaced-scaffold na na JAPZKW010000039.1 = NW_026514207.1 Primary Assembly 25137 na scaffold_111_ctg1 unplaced-scaffold na na JAPZKW010000040.1 = NW_026514208.1 Primary Assembly 25017 na scaffold_112_ctg1 unplaced-scaffold na na JAPZKW010000041.1 = NW_026514209.1 Primary Assembly 23295 na scaffold_113_ctg1 unplaced-scaffold na na JAPZKW010000042.1 = NW_026514210.1 Primary Assembly 20167 na scaffold_115_ctg1 unplaced-scaffold na na JAPZKW010000043.1 = NW_026514211.1 Primary Assembly 18980 na scaffold_117_ctg1 unplaced-scaffold na na JAPZKW010000044.1 = NW_026514212.1 Primary Assembly 13239 na scaffold_118_ctg1 unplaced-scaffold na na JAPZKW010000045.1 = NW_026514213.1 Primary Assembly 10423 na scaffold_119_ctg1 unplaced-scaffold na na JAPZKW010000046.1 = NW_026514214.1 Primary Assembly 5768 na scaffold_120_ctg1 unplaced-scaffold na na JAPZKW010000047.1 = NW_026514215.1 Primary Assembly 4171 na scaffold_121_ctg1 unplaced-scaffold na na JAPZKW010000048.1 = NW_026514216.1 Primary Assembly 3750 na scaffold_122_ctg1 unplaced-scaffold na na JAPZKW010000049.1 = NW_026514217.1 Primary Assembly 1838 na scaffold_123_ctg1 unplaced-scaffold na na JAPZKW010000050.1 = NW_026514218.1 Primary Assembly 1629 na scaffold_124_ctg1 unplaced-scaffold na na JAPZKW010000051.1 = NW_026514219.1 Primary Assembly 989 na scaffold_125_ctg1 unplaced-scaffold na na JAPZKW010000052.1 = NW_026514220.1 Primary Assembly 542 na scaffold_126_ctg1 unplaced-scaffold na na JAPZKW010000053.1 = NW_026514221.1 Primary Assembly 373 na scaffold_127_ctg1 unplaced-scaffold na na JAPZKW010000054.1 = NW_026514222.1 Primary Assembly 361 na scaffold_128_ctg1 unplaced-scaffold na na JAPZKW010000055.1 = NW_026514223.1 Primary Assembly 282 na scaffold_90_ctg1 unplaced-scaffold na na JAPZKW010000056.1 = NW_026514224.1 Primary Assembly 43938 na scaffold_94_ctg1 unplaced-scaffold na na JAPZKW010000057.1 = NW_026514225.1 Primary Assembly 39775 na scaffold_96_ctg1 unplaced-scaffold na na JAPZKW010000058.1 = NW_026514226.1 Primary Assembly 37031 na scaffold_99_ctg1 unplaced-scaffold na na JAPZKW010000059.1 = NW_026514227.1 Primary Assembly 32822 na ptg000001l_rc_rotated assembled-molecule MT Mitochondrion CM050177.1 <> na non-nuclear 16523 na