# Assembly name: mNycCou1.pri # Organism name: Nycticebus coucang (slow loris) # Isolate: mNycCou1 # Sex: male # Taxid: 9470 # BioSample: SAMN28408555 # BioProject: PRJNA838348 # Submitter: Vertebrate Genomes Project # Date: 2022-12-28 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAPZEE01 # Assembly method: HiFiasm v. 0.16.1-r375; purge_dups v. 1.2.5; Bionano Solve v. 3.6.1; salsa v. 2.2; gEval manual curation v. 2022-04-01; VGP pipeline v. 2.0 # Expected final version: no # Genome coverage: 31.63x # Sequencing technology: PacBio Sequel II HiFi; Bionano DLS; Arima Hi-C v2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_027406575.1 # RefSeq assembly accession: GCF_027406575.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_027406535.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_027406605.1 GCF_027406605.1 Primary Assembly ## GCA_027406625.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM050137.1 = NC_069780.1 Primary Assembly 196249132 na SUPER_2 assembled-molecule 2 Chromosome CM050138.1 = NC_069781.1 Primary Assembly 184820795 na SUPER_3 assembled-molecule 3 Chromosome CM050139.1 = NC_069782.1 Primary Assembly 161203717 na SUPER_4 assembled-molecule 4 Chromosome CM050140.1 = NC_069783.1 Primary Assembly 148538759 na SUPER_5 assembled-molecule 5 Chromosome CM050141.1 = NC_069784.1 Primary Assembly 142425405 na SUPER_6 assembled-molecule 6 Chromosome CM050142.1 = NC_069785.1 Primary Assembly 138330575 na SUPER_7 assembled-molecule 7 Chromosome CM050143.1 = NC_069786.1 Primary Assembly 137715312 na SUPER_8 assembled-molecule 8 Chromosome CM050144.1 = NC_069787.1 Primary Assembly 136588019 na SUPER_9 assembled-molecule 9 Chromosome CM050145.1 = NC_069788.1 Primary Assembly 135917784 na SUPER_10 assembled-molecule 10 Chromosome CM050146.1 = NC_069789.1 Primary Assembly 133885751 na SUPER_11 assembled-molecule 11 Chromosome CM050147.1 = NC_069790.1 Primary Assembly 128238841 na SUPER_12 assembled-molecule 12 Chromosome CM050148.1 = NC_069791.1 Primary Assembly 112708720 na SUPER_13 assembled-molecule 13 Chromosome CM050149.1 = NC_069792.1 Primary Assembly 103192619 na SUPER_14 assembled-molecule 14 Chromosome CM050150.1 = NC_069793.1 Primary Assembly 99988313 na SUPER_15 assembled-molecule 15 Chromosome CM050151.1 = NC_069794.1 Primary Assembly 97885895 na SUPER_16 assembled-molecule 16 Chromosome CM050152.1 = NC_069795.1 Primary Assembly 96499272 na SUPER_17 assembled-molecule 17 Chromosome CM050153.1 = NC_069796.1 Primary Assembly 91048355 na SUPER_18 assembled-molecule 18 Chromosome CM050154.1 = NC_069797.1 Primary Assembly 80579731 na SUPER_19 assembled-molecule 19 Chromosome CM050155.1 = NC_069798.1 Primary Assembly 72490086 na SUPER_20 assembled-molecule 20 Chromosome CM050156.1 = NC_069799.1 Primary Assembly 69287667 na SUPER_21 assembled-molecule 21 Chromosome CM050157.1 = NC_069800.1 Primary Assembly 67625389 na SUPER_22 assembled-molecule 22 Chromosome CM050158.1 = NC_069801.1 Primary Assembly 61455708 na SUPER_23 assembled-molecule 23 Chromosome CM050159.1 = NC_069802.1 Primary Assembly 38949463 na SUPER_24 assembled-molecule 24 Chromosome CM050160.1 = NC_069803.1 Primary Assembly 33060932 na SUPER_X assembled-molecule X Chromosome CM050161.1 = NC_069804.1 Primary Assembly 187328519 na SUPER_Y assembled-molecule Y Chromosome CM050162.1 = NC_069805.1 Primary Assembly 35646755 na scaffold_71 unplaced-scaffold na na JAPZEE010000028.1 = NW_026515576.1 Primary Assembly 568924 na scaffold_43 unplaced-scaffold na na JAPZEE010000029.1 = NW_026515577.1 Primary Assembly 3184578 na scaffold_44 unplaced-scaffold na na JAPZEE010000030.1 = NW_026515578.1 Primary Assembly 2074221 na scaffold_46 unplaced-scaffold na na JAPZEE010000031.1 = NW_026515579.1 Primary Assembly 1560655 na scaffold_49 unplaced-scaffold na na JAPZEE010000032.1 = NW_026515580.1 Primary Assembly 1421453 na scaffold_50 unplaced-scaffold na na JAPZEE010000033.1 = NW_026515581.1 Primary Assembly 1307026 na scaffold_67 unplaced-scaffold na na JAPZEE010000034.1 = NW_026515582.1 Primary Assembly 651540 na scaffold_53 unplaced-scaffold na na JAPZEE010000035.1 = NW_026515583.1 Primary Assembly 1254887 na scaffold_54 unplaced-scaffold na na JAPZEE010000036.1 = NW_026515584.1 Primary Assembly 1165168 na scaffold_57 unplaced-scaffold na na JAPZEE010000037.1 = NW_026515585.1 Primary Assembly 1091657 na scaffold_59 unplaced-scaffold na na JAPZEE010000038.1 = NW_026515586.1 Primary Assembly 957251 na scaffold_60 unplaced-scaffold na na JAPZEE010000039.1 = NW_026515587.1 Primary Assembly 909712 na scaffold_62 unplaced-scaffold na na JAPZEE010000040.1 = NW_026515588.1 Primary Assembly 734284 na scaffold_64 unplaced-scaffold na na JAPZEE010000041.1 = NW_026515589.1 Primary Assembly 710867 na scaffold_75 unplaced-scaffold na na JAPZEE010000042.1 = NW_026515590.1 Primary Assembly 484668 na scaffold_65 unplaced-scaffold na na JAPZEE010000043.1 = NW_026515591.1 Primary Assembly 695155 na scaffold_72 unplaced-scaffold na na JAPZEE010000044.1 = NW_026515592.1 Primary Assembly 523794 na scaffold_66 unplaced-scaffold na na JAPZEE010000045.1 = NW_026515593.1 Primary Assembly 677817 na scaffold_69 unplaced-scaffold na na JAPZEE010000046.1 = NW_026515594.1 Primary Assembly 585880 na scaffold_79 unplaced-scaffold na na JAPZEE010000047.1 = NW_026515595.1 Primary Assembly 388694 na scaffold_84 unplaced-scaffold na na JAPZEE010000048.1 = NW_026515596.1 Primary Assembly 307198 na scaffold_70 unplaced-scaffold na na JAPZEE010000049.1 = NW_026515597.1 Primary Assembly 576904 na scaffold_85 unplaced-scaffold na na JAPZEE010000050.1 = NW_026515598.1 Primary Assembly 293335 na scaffold_88 unplaced-scaffold na na JAPZEE010000051.1 = NW_026515599.1 Primary Assembly 239452 na scaffold_89 unplaced-scaffold na na JAPZEE010000052.1 = NW_026515600.1 Primary Assembly 223266 na scaffold_90 unplaced-scaffold na na JAPZEE010000053.1 = NW_026515601.1 Primary Assembly 204634 na scaffold_86 unplaced-scaffold na na JAPZEE010000054.1 = NW_026515602.1 Primary Assembly 273578 na scaffold_96 unplaced-scaffold na na JAPZEE010000055.1 = NW_026515603.1 Primary Assembly 145097 na scaffold_95 unplaced-scaffold na na JAPZEE010000056.1 = NW_026515604.1 Primary Assembly 144877 na scaffold_78 unplaced-scaffold na na JAPZEE010000057.1 = NW_026515605.1 Primary Assembly 391916 na scaffold_91 unplaced-scaffold na na JAPZEE010000058.1 = NW_026515606.1 Primary Assembly 173638 na scaffold_93 unplaced-scaffold na na JAPZEE010000059.1 = NW_026515607.1 Primary Assembly 158388 na scaffold_94 unplaced-scaffold na na JAPZEE010000060.1 = NW_026515608.1 Primary Assembly 158180 na scaffold_97 unplaced-scaffold na na JAPZEE010000061.1 = NW_026515609.1 Primary Assembly 132740 na scaffold_98 unplaced-scaffold na na JAPZEE010000062.1 = NW_026515610.1 Primary Assembly 119230 na scaffold_99 unplaced-scaffold na na JAPZEE010000063.1 = NW_026515611.1 Primary Assembly 112967 na scaffold_100 unplaced-scaffold na na JAPZEE010000064.1 = NW_026515612.1 Primary Assembly 111459 na scaffold_102 unplaced-scaffold na na JAPZEE010000065.1 = NW_026515613.1 Primary Assembly 106241 na scaffold_103 unplaced-scaffold na na JAPZEE010000066.1 = NW_026515614.1 Primary Assembly 94109 na scaffold_105 unplaced-scaffold na na JAPZEE010000067.1 = NW_026515615.1 Primary Assembly 90751 na scaffold_106 unplaced-scaffold na na JAPZEE010000068.1 = NW_026515616.1 Primary Assembly 89442 na scaffold_108 unplaced-scaffold na na JAPZEE010000069.1 = NW_026515617.1 Primary Assembly 48224 na scaffold_127 unplaced-scaffold na na JAPZEE010000070.1 = NW_026515618.1 Primary Assembly 1402 na scaffold_107 unplaced-scaffold na na JAPZEE010000071.1 = NW_026515619.1 Primary Assembly 83428 na scaffold_110 unplaced-scaffold na na JAPZEE010000072.1 = NW_026515620.1 Primary Assembly 43359 na scaffold_112 unplaced-scaffold na na JAPZEE010000073.1 = NW_026515621.1 Primary Assembly 36225 na scaffold_113 unplaced-scaffold na na JAPZEE010000074.1 = NW_026515622.1 Primary Assembly 31508 na scaffold_115 unplaced-scaffold na na JAPZEE010000075.1 = NW_026515623.1 Primary Assembly 24411 na scaffold_116 unplaced-scaffold na na JAPZEE010000076.1 = NW_026515624.1 Primary Assembly 22335 na scaffold_117 unplaced-scaffold na na JAPZEE010000077.1 = NW_026515625.1 Primary Assembly 21485 na scaffold_119 unplaced-scaffold na na JAPZEE010000078.1 = NW_026515626.1 Primary Assembly 15762 na scaffold_120 unplaced-scaffold na na JAPZEE010000079.1 = NW_026515627.1 Primary Assembly 13318 na scaffold_121 unplaced-scaffold na na JAPZEE010000080.1 = NW_026515628.1 Primary Assembly 12977 na scaffold_122 unplaced-scaffold na na JAPZEE010000081.1 = NW_026515629.1 Primary Assembly 10912 na scaffold_123 unplaced-scaffold na na JAPZEE010000082.1 = NW_026515630.1 Primary Assembly 10514 na scaffold_124 unplaced-scaffold na na JAPZEE010000083.1 = NW_026515631.1 Primary Assembly 9092 na scaffold_125 unplaced-scaffold na na JAPZEE010000084.1 = NW_026515632.1 Primary Assembly 6427 na scaffold_126 unplaced-scaffold na na JAPZEE010000085.1 = NW_026515633.1 Primary Assembly 5527 na ptg000020l_rotated assembled-molecule MT Mitochondrion CM050178.1 <> na non-nuclear 16752 na