# Assembly name: bSphHub1.pri # Organism name: Spheniscus humboldti (Humboldt's penguin) # Isolate: bSphHub1 # Sex: female # Taxid: 9240 # BioSample: SAMN28408465 # BioProject: PRJNA838343 # Submitter: Vertebrate Genomes Project # Date: 2022-12-28 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAPZLJ01 # Assembly method: HiFiasm v. 0.16.1 + galaxy1; purge_dups v. 1.2.5 + galaxy3; Bionano Solve v. 3.7.0 + galaxy0; salsa v. 2.3 + galaxy2 # Expected final version: no # Genome coverage: 28.14x # Sequencing technology: PacBio Sequel II HiFi # RefSeq category: Representative Genome # GenBank assembly accession: GCA_027474245.1 # Linked assembly: GCA_027474345.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_027474335.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM049887.1 <> na Primary Assembly 231542106 na SUPER_2 assembled-molecule 2 Chromosome CM049888.1 <> na Primary Assembly 180138745 na SUPER_3 assembled-molecule 3 Chromosome CM049889.1 <> na Primary Assembly 136016534 na SUPER_4 assembled-molecule 4 Chromosome CM049890.1 <> na Primary Assembly 92123466 na SUPER_5 assembled-molecule 5 Chromosome CM049891.1 <> na Primary Assembly 84169648 na SUPER_6 assembled-molecule 6 Chromosome CM049892.1 <> na Primary Assembly 82681834 na SUPER_7 assembled-molecule 7 Chromosome CM049893.1 <> na Primary Assembly 76038725 na SUPER_8 assembled-molecule 8 Chromosome CM049894.1 <> na Primary Assembly 28330722 na SUPER_9 assembled-molecule 9 Chromosome CM049895.1 <> na Primary Assembly 26945421 na SUPER_10 assembled-molecule 10 Chromosome CM049896.1 <> na Primary Assembly 26310191 na SUPER_11 assembled-molecule 11 Chromosome CM049897.1 <> na Primary Assembly 25829070 na SUPER_12 assembled-molecule 12 Chromosome CM049898.1 <> na Primary Assembly 25824210 na SUPER_13 assembled-molecule 13 Chromosome CM049899.1 <> na Primary Assembly 24360211 na SUPER_14 assembled-molecule 14 Chromosome CM049900.1 <> na Primary Assembly 20829591 na SUPER_15 assembled-molecule 15 Chromosome CM049901.1 <> na Primary Assembly 17594487 na SUPER_16 assembled-molecule 16 Chromosome CM049902.1 <> na Primary Assembly 16186566 na SUPER_17 assembled-molecule 17 Chromosome CM049903.1 <> na Primary Assembly 14683240 na SUPER_18 assembled-molecule 18 Chromosome CM049904.1 <> na Primary Assembly 14407780 na SUPER_19 assembled-molecule 19 Chromosome CM049905.1 <> na Primary Assembly 10113976 na SUPER_20 assembled-molecule 20 Chromosome CM049906.1 <> na Primary Assembly 9667627 na SUPER_21 assembled-molecule 21 Chromosome CM049907.1 <> na Primary Assembly 9203502 na SUPER_22 assembled-molecule 22 Chromosome CM049908.1 <> na Primary Assembly 9157243 na SUPER_23 assembled-molecule 23 Chromosome CM049909.1 <> na Primary Assembly 8211966 na SUPER_24 assembled-molecule 24 Chromosome CM049910.1 <> na Primary Assembly 7053847 na SUPER_25 assembled-molecule 25 Chromosome CM049911.1 <> na Primary Assembly 6879212 na SUPER_26 assembled-molecule 26 Chromosome CM049912.1 <> na Primary Assembly 6646859 na SUPER_27 assembled-molecule 27 Chromosome CM049913.1 <> na Primary Assembly 4320639 na SUPER_28 assembled-molecule 28 Chromosome CM049914.1 <> na Primary Assembly 4137724 na SUPER_29 assembled-molecule 29 Chromosome CM049915.1 <> na Primary Assembly 2622368 na SUPER_30 assembled-molecule 30 Chromosome CM049916.1 <> na Primary Assembly 382594 na SUPER_31 assembled-molecule 31 Chromosome CM049917.1 <> na Primary Assembly 297307 na SUPER_32 assembled-molecule 32 Chromosome CM049918.1 <> na Primary Assembly 83038 na SUPER_33 assembled-molecule 33 Chromosome CM049919.1 <> na Primary Assembly 113750 na SUPER_34 assembled-molecule 34 Chromosome CM049920.1 <> na Primary Assembly 66880 na SUPER_35 assembled-molecule 35 Chromosome CM049921.1 <> na Primary Assembly 99004 na SUPER_W assembled-molecule W Chromosome CM049922.1 <> na Primary Assembly 40516915 na SUPER_Z assembled-molecule Z Chromosome CM049923.1 <> na Primary Assembly 89079306 na SUPER_26_unloc_1 unlocalized-scaffold 26 Chromosome JAPZLJ010000029.1 <> na Primary Assembly 23668 na SUPER_29_unloc_1 unlocalized-scaffold 29 Chromosome JAPZLJ010000033.1 <> na Primary Assembly 20336 na SUPER_30_unloc_1 unlocalized-scaffold 30 Chromosome JAPZLJ010000035.1 <> na Primary Assembly 188957 na SUPER_30_unloc_2 unlocalized-scaffold 30 Chromosome JAPZLJ010000036.1 <> na Primary Assembly 146821 na SUPER_30_unloc_3 unlocalized-scaffold 30 Chromosome JAPZLJ010000037.1 <> na Primary Assembly 95652 na SUPER_30_unloc_4 unlocalized-scaffold 30 Chromosome JAPZLJ010000038.1 <> na Primary Assembly 84641 na SUPER_30_unloc_5 unlocalized-scaffold 30 Chromosome JAPZLJ010000039.1 <> na Primary Assembly 51429 na SUPER_30_unloc_6 unlocalized-scaffold 30 Chromosome JAPZLJ010000040.1 <> na Primary Assembly 50362 na SUPER_30_unloc_7 unlocalized-scaffold 30 Chromosome JAPZLJ010000041.1 <> na Primary Assembly 35017 na SUPER_30_unloc_8 unlocalized-scaffold 30 Chromosome JAPZLJ010000042.1 <> na Primary Assembly 34249 na SUPER_30_unloc_9 unlocalized-scaffold 30 Chromosome JAPZLJ010000043.1 <> na Primary Assembly 32694 na SUPER_30_unloc_10 unlocalized-scaffold 30 Chromosome JAPZLJ010000044.1 <> na Primary Assembly 26075 na SUPER_31_unloc_1 unlocalized-scaffold 31 Chromosome JAPZLJ010000046.1 <> na Primary Assembly 133972 na SUPER_31_unloc_2 unlocalized-scaffold 31 Chromosome JAPZLJ010000047.1 <> na Primary Assembly 122051 na SUPER_31_unloc_3 unlocalized-scaffold 31 Chromosome JAPZLJ010000048.1 <> na Primary Assembly 115395 na SUPER_31_unloc_4 unlocalized-scaffold 31 Chromosome JAPZLJ010000049.1 <> na Primary Assembly 54093 na SUPER_31_unloc_5 unlocalized-scaffold 31 Chromosome JAPZLJ010000050.1 <> na Primary Assembly 20469 na SUPER_32_unloc_1 unlocalized-scaffold 32 Chromosome JAPZLJ010000052.1 <> na Primary Assembly 66090 na SUPER_32_unloc_2 unlocalized-scaffold 32 Chromosome JAPZLJ010000053.1 <> na Primary Assembly 50826 na SUPER_32_unloc_3 unlocalized-scaffold 32 Chromosome JAPZLJ010000054.1 <> na Primary Assembly 36712 na SUPER_32_unloc_4 unlocalized-scaffold 32 Chromosome JAPZLJ010000055.1 <> na Primary Assembly 33083 na SUPER_33_unloc_1 unlocalized-scaffold 33 Chromosome JAPZLJ010000057.1 <> na Primary Assembly 44066 na SUPER_33_unloc_2 unlocalized-scaffold 33 Chromosome JAPZLJ010000058.1 <> na Primary Assembly 21382 na SUPER_34_unloc_1 unlocalized-scaffold 34 Chromosome JAPZLJ010000060.1 <> na Primary Assembly 46430 na SUPER_34_unloc_2 unlocalized-scaffold 34 Chromosome JAPZLJ010000061.1 <> na Primary Assembly 33280 na SUPER_34_unloc_3 unlocalized-scaffold 34 Chromosome JAPZLJ010000062.1 <> na Primary Assembly 19937 na SUPER_35_unloc_1 unlocalized-scaffold 35 Chromosome JAPZLJ010000064.1 <> na Primary Assembly 29127 na SUPER_35_unloc_2 unlocalized-scaffold 35 Chromosome JAPZLJ010000065.1 <> na Primary Assembly 25919 na scaffold_102 unplaced-scaffold na na JAPZLJ010000109.1 <> na Primary Assembly 185288 na scaffold_105 unplaced-scaffold na na JAPZLJ010000105.1 <> na Primary Assembly 153737 na scaffold_108 unplaced-scaffold na na JAPZLJ010000102.1 <> na Primary Assembly 144805 na scaffold_109 unplaced-scaffold na na JAPZLJ010000104.1 <> na Primary Assembly 137392 na scaffold_112 unplaced-scaffold na na JAPZLJ010000110.1 <> na Primary Assembly 132831 na scaffold_113 unplaced-scaffold na na JAPZLJ010000073.1 <> na Primary Assembly 132627 na scaffold_116 unplaced-scaffold na na JAPZLJ010000111.1 <> na Primary Assembly 131511 na scaffold_118 unplaced-scaffold na na JAPZLJ010000128.1 <> na Primary Assembly 118850 na scaffold_120 unplaced-scaffold na na JAPZLJ010000129.1 <> na Primary Assembly 114808 na scaffold_122 unplaced-scaffold na na JAPZLJ010000112.1 <> na Primary Assembly 110833 na scaffold_123 unplaced-scaffold na na JAPZLJ010000113.1 <> na Primary Assembly 110769 na scaffold_125 unplaced-scaffold na na JAPZLJ010000067.1 <> na Primary Assembly 109889 na scaffold_126 unplaced-scaffold na na JAPZLJ010000132.1 <> na Primary Assembly 109775 na scaffold_127 unplaced-scaffold na na JAPZLJ010000114.1 <> na Primary Assembly 98868 na scaffold_129 unplaced-scaffold na na JAPZLJ010000115.1 <> na Primary Assembly 97721 na scaffold_131 unplaced-scaffold na na JAPZLJ010000116.1 <> na Primary Assembly 88708 na scaffold_132 unplaced-scaffold na na JAPZLJ010000117.1 <> na Primary Assembly 84859 na scaffold_136 unplaced-scaffold na na JAPZLJ010000118.1 <> na Primary Assembly 82223 na scaffold_137 unplaced-scaffold na na JAPZLJ010000119.1 <> na Primary Assembly 80617 na scaffold_138 unplaced-scaffold na na JAPZLJ010000120.1 <> na Primary Assembly 80466 na scaffold_139 unplaced-scaffold na na JAPZLJ010000121.1 <> na Primary Assembly 80388 na scaffold_140 unplaced-scaffold na na JAPZLJ010000122.1 <> na Primary Assembly 79415 na scaffold_141 unplaced-scaffold na na JAPZLJ010000123.1 <> na Primary Assembly 78353 na scaffold_142 unplaced-scaffold na na JAPZLJ010000125.1 <> na Primary Assembly 75843 na scaffold_144 unplaced-scaffold na na JAPZLJ010000069.1 <> na Primary Assembly 71830 na scaffold_145 unplaced-scaffold na na JAPZLJ010000103.1 <> na Primary Assembly 71054 na scaffold_146 unplaced-scaffold na na JAPZLJ010000126.1 <> na Primary Assembly 68566 na scaffold_152 unplaced-scaffold na na JAPZLJ010000070.1 <> na Primary Assembly 60455 na scaffold_153 unplaced-scaffold na na JAPZLJ010000127.1 <> na Primary Assembly 60330 na scaffold_154 unplaced-scaffold na na JAPZLJ010000077.1 <> na Primary Assembly 55398 na scaffold_157 unplaced-scaffold na na JAPZLJ010000078.1 <> na Primary Assembly 53331 na scaffold_159 unplaced-scaffold na na JAPZLJ010000071.1 <> na Primary Assembly 52623 na scaffold_160 unplaced-scaffold na na JAPZLJ010000075.1 <> na Primary Assembly 51931 na scaffold_161 unplaced-scaffold na na JAPZLJ010000124.1 <> na Primary Assembly 51732 na scaffold_167 unplaced-scaffold na na JAPZLJ010000079.1 <> na Primary Assembly 43809 na scaffold_168 unplaced-scaffold na na JAPZLJ010000130.1 <> na Primary Assembly 43404 na scaffold_170 unplaced-scaffold na na JAPZLJ010000131.1 <> na Primary Assembly 39323 na scaffold_174 unplaced-scaffold na na JAPZLJ010000080.1 <> na Primary Assembly 35853 na scaffold_177 unplaced-scaffold na na JAPZLJ010000074.1 <> na Primary Assembly 33600 na scaffold_182 unplaced-scaffold na na JAPZLJ010000068.1 <> na Primary Assembly 32910 na scaffold_184 unplaced-scaffold na na JAPZLJ010000081.1 <> na Primary Assembly 32147 na scaffold_185 unplaced-scaffold na na JAPZLJ010000133.1 <> na Primary Assembly 31169 na scaffold_186 unplaced-scaffold na na JAPZLJ010000101.1 <> na Primary Assembly 30387 na scaffold_188 unplaced-scaffold na na JAPZLJ010000134.1 <> na Primary Assembly 29348 na scaffold_190 unplaced-scaffold na na JAPZLJ010000082.1 <> na Primary Assembly 28953 na scaffold_192 unplaced-scaffold na na JAPZLJ010000135.1 <> na Primary Assembly 27940 na scaffold_201 unplaced-scaffold na na JAPZLJ010000136.1 <> na Primary Assembly 19918 na scaffold_202 unplaced-scaffold na na JAPZLJ010000083.1 <> na Primary Assembly 17816 na scaffold_34 unplaced-scaffold na na JAPZLJ010000088.1 <> na Primary Assembly 3913415 na scaffold_38 unplaced-scaffold na na JAPZLJ010000090.1 <> na Primary Assembly 2355070 na scaffold_42 unplaced-scaffold na na JAPZLJ010000091.1 <> na Primary Assembly 2195606 na scaffold_49 unplaced-scaffold na na JAPZLJ010000087.1 <> na Primary Assembly 1354320 na scaffold_53 unplaced-scaffold na na JAPZLJ010000092.1 <> na Primary Assembly 1122438 na scaffold_58 unplaced-scaffold na na JAPZLJ010000093.1 <> na Primary Assembly 998165 na scaffold_65 unplaced-scaffold na na JAPZLJ010000085.1 <> na Primary Assembly 815529 na scaffold_66 unplaced-scaffold na na JAPZLJ010000094.1 <> na Primary Assembly 807968 na scaffold_67 unplaced-scaffold na na JAPZLJ010000084.1 <> na Primary Assembly 760497 na scaffold_69 unplaced-scaffold na na JAPZLJ010000066.1 <> na Primary Assembly 679245 na scaffold_71 unplaced-scaffold na na JAPZLJ010000095.1 <> na Primary Assembly 626966 na scaffold_72 unplaced-scaffold na na JAPZLJ010000096.1 <> na Primary Assembly 609408 na scaffold_74 unplaced-scaffold na na JAPZLJ010000097.1 <> na Primary Assembly 592663 na scaffold_75 unplaced-scaffold na na JAPZLJ010000098.1 <> na Primary Assembly 590430 na scaffold_77 unplaced-scaffold na na JAPZLJ010000089.1 <> na Primary Assembly 553142 na scaffold_80 unplaced-scaffold na na JAPZLJ010000099.1 <> na Primary Assembly 429811 na scaffold_83 unplaced-scaffold na na JAPZLJ010000100.1 <> na Primary Assembly 383787 na scaffold_86 unplaced-scaffold na na JAPZLJ010000086.1 <> na Primary Assembly 349689 na scaffold_88 unplaced-scaffold na na JAPZLJ010000072.1 <> na Primary Assembly 325156 na scaffold_93 unplaced-scaffold na na JAPZLJ010000106.1 <> na Primary Assembly 242646 na scaffold_94 unplaced-scaffold na na JAPZLJ010000107.1 <> na Primary Assembly 237064 na scaffold_95 unplaced-scaffold na na JAPZLJ010000108.1 <> na Primary Assembly 235999 na scaffold_98 unplaced-scaffold na na JAPZLJ010000076.1 <> na Primary Assembly 205264 na