# Assembly name: bRhyJub1.pri # Organism name: Rhynochetos jubatus (kagu) # Isolate: bRhyJub1 # Sex: female # Taxid: 54386 # BioSample: SAMN31802033 # BioProject: PRJNA916495 # Submitter: Vertebrate Genomes Project # Date: 2023-01-09 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAQBHY01 # Assembly method: HiFiasm v. 0.16.1 + galaxy2; purge_dups v. 1.2.5 + galaxy4; Bionano Solve v. 3.7.0 + galaxy0; salsa v. 2.3 + galaxy2; gEVAl manual curation v. 2022-06-16 # Expected final version: no # Genome coverage: 35.71x # Sequencing technology: PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C v2 # RefSeq category: Representative Genome # GenBank assembly accession: GCA_027574665.1 # Linked assembly: GCA_027595965.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_027574675.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM050648.1 <> na Primary Assembly 148633065 na SUPER_2 assembled-molecule 2 Chromosome CM050649.1 <> na Primary Assembly 135783503 na SUPER_3 assembled-molecule 3 Chromosome CM050650.1 <> na Primary Assembly 126030574 na SUPER_4 assembled-molecule 4 Chromosome CM050651.1 <> na Primary Assembly 79193548 na SUPER_5 assembled-molecule 5 Chromosome CM050652.1 <> na Primary Assembly 77456406 na SUPER_6 assembled-molecule 6 Chromosome CM050653.1 <> na Primary Assembly 63592491 na SUPER_7 assembled-molecule 7 Chromosome CM050654.1 <> na Primary Assembly 43487003 na SUPER_8 assembled-molecule 8 Chromosome CM050655.1 <> na Primary Assembly 42586496 na SUPER_9 assembled-molecule 9 Chromosome CM050656.1 <> na Primary Assembly 34938080 na SUPER_10 assembled-molecule 10 Chromosome CM050657.1 <> na Primary Assembly 31637750 na SUPER_11 assembled-molecule 11 Chromosome CM050658.1 <> na Primary Assembly 26223527 na SUPER_12 assembled-molecule 12 Chromosome CM050659.1 <> na Primary Assembly 25955176 na SUPER_13 assembled-molecule 13 Chromosome CM050660.1 <> na Primary Assembly 24641603 na SUPER_14 assembled-molecule 14 Chromosome CM050661.1 <> na Primary Assembly 24483328 na SUPER_15 assembled-molecule 15 Chromosome CM050662.1 <> na Primary Assembly 24077915 na SUPER_16 assembled-molecule 16 Chromosome CM050663.1 <> na Primary Assembly 22070419 na SUPER_17 assembled-molecule 17 Chromosome CM050664.1 <> na Primary Assembly 20605837 na SUPER_18 assembled-molecule 18 Chromosome CM050665.1 <> na Primary Assembly 18285868 na SUPER_19 assembled-molecule 19 Chromosome CM050666.1 <> na Primary Assembly 18041197 na SUPER_20 assembled-molecule 20 Chromosome CM050667.1 <> na Primary Assembly 17124324 na SUPER_21 assembled-molecule 21 Chromosome CM050668.1 <> na Primary Assembly 14705844 na SUPER_22 assembled-molecule 22 Chromosome CM050669.1 <> na Primary Assembly 14343814 na SUPER_23 assembled-molecule 23 Chromosome CM050670.1 <> na Primary Assembly 13333392 na SUPER_24 assembled-molecule 24 Chromosome CM050671.1 <> na Primary Assembly 12613768 na SUPER_25 assembled-molecule 25 Chromosome CM050672.1 <> na Primary Assembly 11634699 na SUPER_26 assembled-molecule 26 Chromosome CM050673.1 <> na Primary Assembly 10305424 na SUPER_27 assembled-molecule 27 Chromosome CM050674.1 <> na Primary Assembly 7905310 na SUPER_28 assembled-molecule 28 Chromosome CM050675.1 <> na Primary Assembly 7476234 na SUPER_29 assembled-molecule 29 Chromosome CM050676.1 <> na Primary Assembly 7286684 na SUPER_30 assembled-molecule 30 Chromosome CM050677.1 <> na Primary Assembly 7179546 na SUPER_31 assembled-molecule 31 Chromosome CM050678.1 <> na Primary Assembly 6951883 na SUPER_32 assembled-molecule 32 Chromosome CM050679.1 <> na Primary Assembly 5762108 na SUPER_33 assembled-molecule 33 Chromosome CM050680.1 <> na Primary Assembly 5742774 na SUPER_34 assembled-molecule 34 Chromosome CM050681.1 <> na Primary Assembly 3268688 na SUPER_35 assembled-molecule 35 Chromosome CM050682.1 <> na Primary Assembly 2310788 na SUPER_36 assembled-molecule 36 Chromosome CM050683.1 <> na Primary Assembly 1192677 na SUPER_37 assembled-molecule 37 Chromosome CM050684.1 <> na Primary Assembly 402486 na SUPER_38 assembled-molecule 38 Chromosome CM050685.1 <> na Primary Assembly 356123 na SUPER_39 assembled-molecule 39 Chromosome CM050686.1 <> na Primary Assembly 133952 na SUPER_40 assembled-molecule 40 Chromosome CM050687.1 <> na Primary Assembly 124063 na SUPER_41 assembled-molecule 41 Chromosome CM050688.1 <> na Primary Assembly 120585 na SUPER_W assembled-molecule W Chromosome CM050689.1 <> na Primary Assembly 16546022 na SUPER_Z assembled-molecule Z Chromosome CM050690.1 <> na Primary Assembly 85188879 na SUPER_8_unloc_1 unlocalized-scaffold 8 Chromosome JAQBHY010000012.1 <> na Primary Assembly 321833 na SUPER_8_unloc_2 unlocalized-scaffold 8 Chromosome JAQBHY010000013.1 <> na Primary Assembly 237250 na SUPER_34_unloc_1 unlocalized-scaffold 34 Chromosome JAQBHY010000040.1 <> na Primary Assembly 422765 na SUPER_36_unloc_1 unlocalized-scaffold 36 Chromosome JAQBHY010000043.1 <> na Primary Assembly 52493 na SUPER_W_unloc_1 unlocalized-scaffold W Chromosome JAQBHY010000003.1 <> na Primary Assembly 128154 na scaffold_101 unplaced-scaffold na na JAQBHY010000060.1 <> na Primary Assembly 1088222 na scaffold_102 unplaced-scaffold na na JAQBHY010000094.1 <> na Primary Assembly 1082109 na scaffold_103 unplaced-scaffold na na JAQBHY010000095.1 <> na Primary Assembly 1078089 na scaffold_104 unplaced-scaffold na na JAQBHY010000096.1 <> na Primary Assembly 1025483 na scaffold_109 unplaced-scaffold na na JAQBHY010000097.1 <> na Primary Assembly 928675 na scaffold_110 unplaced-scaffold na na JAQBHY010000061.1 <> na Primary Assembly 927359 na scaffold_111 unplaced-scaffold na na JAQBHY010000098.1 <> na Primary Assembly 914516 na scaffold_114 unplaced-scaffold na na JAQBHY010000099.1 <> na Primary Assembly 855895 na scaffold_116 unplaced-scaffold na na JAQBHY010000100.1 <> na Primary Assembly 834887 na scaffold_118 unplaced-scaffold na na JAQBHY010000101.1 <> na Primary Assembly 812862 na scaffold_125 unplaced-scaffold na na JAQBHY010000062.1 <> na Primary Assembly 652146 na scaffold_128 unplaced-scaffold na na JAQBHY010000069.1 <> na Primary Assembly 577976 na scaffold_129 unplaced-scaffold na na JAQBHY010000102.1 <> na Primary Assembly 564397 na scaffold_131 unplaced-scaffold na na JAQBHY010000103.1 <> na Primary Assembly 550992 na scaffold_132 unplaced-scaffold na na JAQBHY010000105.1 <> na Primary Assembly 545439 na scaffold_134 unplaced-scaffold na na JAQBHY010000104.1 <> na Primary Assembly 470213 na scaffold_141 unplaced-scaffold na na JAQBHY010000063.1 <> na Primary Assembly 381321 na scaffold_144 unplaced-scaffold na na JAQBHY010000064.1 <> na Primary Assembly 281225 na scaffold_145 unplaced-scaffold na na JAQBHY010000065.1 <> na Primary Assembly 274557 na scaffold_153 unplaced-scaffold na na JAQBHY010000066.1 <> na Primary Assembly 210712 na scaffold_158 unplaced-scaffold na na JAQBHY010000067.1 <> na Primary Assembly 131392 na scaffold_165 unplaced-scaffold na na JAQBHY010000051.1 <> na Primary Assembly 113493 na scaffold_16_1 unplaced-scaffold na na JAQBHY010000050.1 <> na Primary Assembly 1625447 na scaffold_173 unplaced-scaffold na na JAQBHY010000106.1 <> na Primary Assembly 72381 na scaffold_174 unplaced-scaffold na na JAQBHY010000107.1 <> na Primary Assembly 69182 na scaffold_175 unplaced-scaffold na na JAQBHY010000108.1 <> na Primary Assembly 65731 na scaffold_176 unplaced-scaffold na na JAQBHY010000109.1 <> na Primary Assembly 60430 na scaffold_178 unplaced-scaffold na na JAQBHY010000110.1 <> na Primary Assembly 54955 na scaffold_180 unplaced-scaffold na na JAQBHY010000111.1 <> na Primary Assembly 53422 na scaffold_181 unplaced-scaffold na na JAQBHY010000112.1 <> na Primary Assembly 53251 na scaffold_182 unplaced-scaffold na na JAQBHY010000113.1 <> na Primary Assembly 53155 na scaffold_186 unplaced-scaffold na na JAQBHY010000114.1 <> na Primary Assembly 50903 na scaffold_188 unplaced-scaffold na na JAQBHY010000115.1 <> na Primary Assembly 48945 na scaffold_189 unplaced-scaffold na na JAQBHY010000116.1 <> na Primary Assembly 48678 na scaffold_191 unplaced-scaffold na na JAQBHY010000117.1 <> na Primary Assembly 44378 na scaffold_193 unplaced-scaffold na na JAQBHY010000118.1 <> na Primary Assembly 41465 na scaffold_195 unplaced-scaffold na na JAQBHY010000119.1 <> na Primary Assembly 40214 na scaffold_196 unplaced-scaffold na na JAQBHY010000120.1 <> na Primary Assembly 38745 na scaffold_199 unplaced-scaffold na na JAQBHY010000121.1 <> na Primary Assembly 34594 na scaffold_200 unplaced-scaffold na na JAQBHY010000122.1 <> na Primary Assembly 34048 na scaffold_201 unplaced-scaffold na na JAQBHY010000123.1 <> na Primary Assembly 33986 na scaffold_202 unplaced-scaffold na na JAQBHY010000139.1 <> na Primary Assembly 33734 na scaffold_203 unplaced-scaffold na na JAQBHY010000124.1 <> na Primary Assembly 33337 na scaffold_204 unplaced-scaffold na na JAQBHY010000125.1 <> na Primary Assembly 33306 na scaffold_205 unplaced-scaffold na na JAQBHY010000126.1 <> na Primary Assembly 32705 na scaffold_207 unplaced-scaffold na na JAQBHY010000140.1 <> na Primary Assembly 30779 na scaffold_209 unplaced-scaffold na na JAQBHY010000127.1 <> na Primary Assembly 29738 na scaffold_210 unplaced-scaffold na na JAQBHY010000128.1 <> na Primary Assembly 29486 na scaffold_211 unplaced-scaffold na na JAQBHY010000141.1 <> na Primary Assembly 29067 na scaffold_212 unplaced-scaffold na na JAQBHY010000129.1 <> na Primary Assembly 28912 na scaffold_213 unplaced-scaffold na na JAQBHY010000130.1 <> na Primary Assembly 28464 na scaffold_214 unplaced-scaffold na na JAQBHY010000142.1 <> na Primary Assembly 27499 na scaffold_215 unplaced-scaffold na na JAQBHY010000131.1 <> na Primary Assembly 26266 na scaffold_216 unplaced-scaffold na na JAQBHY010000132.1 <> na Primary Assembly 25728 na scaffold_217 unplaced-scaffold na na JAQBHY010000143.1 <> na Primary Assembly 25052 na scaffold_219 unplaced-scaffold na na JAQBHY010000144.1 <> na Primary Assembly 24529 na scaffold_220 unplaced-scaffold na na JAQBHY010000133.1 <> na Primary Assembly 23607 na scaffold_221 unplaced-scaffold na na JAQBHY010000134.1 <> na Primary Assembly 22116 na scaffold_222 unplaced-scaffold na na JAQBHY010000145.1 <> na Primary Assembly 21992 na scaffold_223 unplaced-scaffold na na JAQBHY010000135.1 <> na Primary Assembly 21163 na scaffold_224 unplaced-scaffold na na JAQBHY010000146.1 <> na Primary Assembly 20710 na scaffold_225 unplaced-scaffold na na JAQBHY010000136.1 <> na Primary Assembly 20690 na scaffold_226 unplaced-scaffold na na JAQBHY010000147.1 <> na Primary Assembly 20564 na scaffold_227 unplaced-scaffold na na JAQBHY010000137.1 <> na Primary Assembly 19881 na scaffold_228 unplaced-scaffold na na JAQBHY010000148.1 <> na Primary Assembly 19127 na scaffold_229 unplaced-scaffold na na JAQBHY010000138.1 <> na Primary Assembly 17051 na scaffold_22_1 unplaced-scaffold na na JAQBHY010000049.1 <> na Primary Assembly 4151404 na scaffold_49 unplaced-scaffold na na JAQBHY010000070.1 <> na Primary Assembly 4565691 na scaffold_52 unplaced-scaffold na na JAQBHY010000071.1 <> na Primary Assembly 3771500 na scaffold_53 unplaced-scaffold na na JAQBHY010000072.1 <> na Primary Assembly 3626435 na scaffold_55 unplaced-scaffold na na JAQBHY010000073.1 <> na Primary Assembly 3177283 na scaffold_56 unplaced-scaffold na na JAQBHY010000074.1 <> na Primary Assembly 2984357 na scaffold_58 unplaced-scaffold na na JAQBHY010000075.1 <> na Primary Assembly 2702232 na scaffold_60 unplaced-scaffold na na JAQBHY010000076.1 <> na Primary Assembly 2612095 na scaffold_61 unplaced-scaffold na na JAQBHY010000068.1 <> na Primary Assembly 2474191 na scaffold_62 unplaced-scaffold na na JAQBHY010000077.1 <> na Primary Assembly 2365724 na scaffold_63 unplaced-scaffold na na JAQBHY010000078.1 <> na Primary Assembly 2350885 na scaffold_65 unplaced-scaffold na na JAQBHY010000079.1 <> na Primary Assembly 2181730 na scaffold_66 unplaced-scaffold na na JAQBHY010000080.1 <> na Primary Assembly 2179840 na scaffold_68 unplaced-scaffold na na JAQBHY010000081.1 <> na Primary Assembly 2098363 na scaffold_69 unplaced-scaffold na na JAQBHY010000082.1 <> na Primary Assembly 2076066 na scaffold_70 unplaced-scaffold na na JAQBHY010000052.1 <> na Primary Assembly 2054814 na scaffold_71 unplaced-scaffold na na JAQBHY010000083.1 <> na Primary Assembly 2053017 na scaffold_74 unplaced-scaffold na na JAQBHY010000055.1 <> na Primary Assembly 1992586 na scaffold_75 unplaced-scaffold na na JAQBHY010000084.1 <> na Primary Assembly 1888416 na scaffold_76 unplaced-scaffold na na JAQBHY010000085.1 <> na Primary Assembly 1869694 na scaffold_77 unplaced-scaffold na na JAQBHY010000086.1 <> na Primary Assembly 1797299 na scaffold_79 unplaced-scaffold na na JAQBHY010000054.1 <> na Primary Assembly 1714959 na scaffold_80 unplaced-scaffold na na JAQBHY010000056.1 <> na Primary Assembly 1652716 na scaffold_82 unplaced-scaffold na na JAQBHY010000087.1 <> na Primary Assembly 1575741 na scaffold_83 unplaced-scaffold na na JAQBHY010000057.1 <> na Primary Assembly 1558058 na scaffold_85 unplaced-scaffold na na JAQBHY010000088.1 <> na Primary Assembly 1426862 na scaffold_86 unplaced-scaffold na na JAQBHY010000089.1 <> na Primary Assembly 1426672 na scaffold_87 unplaced-scaffold na na JAQBHY010000090.1 <> na Primary Assembly 1420808 na scaffold_88 unplaced-scaffold na na JAQBHY010000058.1 <> na Primary Assembly 1348179 na scaffold_89 unplaced-scaffold na na JAQBHY010000091.1 <> na Primary Assembly 1321139 na scaffold_93 unplaced-scaffold na na JAQBHY010000092.1 <> na Primary Assembly 1196887 na scaffold_95 unplaced-scaffold na na JAQBHY010000059.1 <> na Primary Assembly 1187607 na scaffold_97 unplaced-scaffold na na JAQBHY010000093.1 <> na Primary Assembly 1153498 na scaffold_99 unplaced-scaffold na na JAQBHY010000053.1 <> na Primary Assembly 1129879 na