# Assembly name: bAmmNel1.pri # Organism name: Ammospiza nelsoni (birds) # Isolate: bAmmNel1 # Sex: female # Taxid: 2857394 # BioSample: SAMN28421656 # BioProject: PRJNA839456 # Submitter: Vertebrate Genomes Project # Date: 2023-01-09 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAQCNT01 # Assembly method: HiFiasm v. 0.15.4 + galaxy0; purge_dups v. 1.2.5 + galaxy3; Bionano Solve v. 3.6.1 + galaxy3; salsa v. 2.3 + galaxy2 # Expected final version: no # Genome coverage: 34.27x # Sequencing technology: PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C v2 # RefSeq category: Representative Genome # GenBank assembly accession: GCA_027579445.1 # RefSeq assembly accession: GCF_027579445.1 # RefSeq assembly and GenBank assemblies identical: yes # Linked assembly: GCA_027579665.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_027579455.1 GCF_027579455.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM050581.1 = NC_080633.1 Primary Assembly 155447619 na SUPER_2 assembled-molecule 2 Chromosome CM050582.1 = NC_080634.1 Primary Assembly 120722141 na SUPER_3 assembled-molecule 3 Chromosome CM050583.1 = NC_080635.1 Primary Assembly 115508148 na SUPER_4 assembled-molecule 4 Chromosome CM050584.1 = NC_080636.1 Primary Assembly 76633907 na SUPER_5 assembled-molecule 5 Chromosome CM050585.1 = NC_080637.1 Primary Assembly 74723840 na SUPER_6 assembled-molecule 6 Chromosome CM050586.1 = NC_080638.1 Primary Assembly 65395694 na SUPER_7 assembled-molecule 7 Chromosome CM050587.1 = NC_080639.1 Primary Assembly 40159020 na SUPER_8 assembled-molecule 8 Chromosome CM050588.1 = NC_080640.1 Primary Assembly 39623761 na SUPER_9 assembled-molecule 9 Chromosome CM050589.1 = NC_080641.1 Primary Assembly 36565514 na SUPER_10 assembled-molecule 10 Chromosome CM050590.1 = NC_080642.1 Primary Assembly 27615464 na SUPER_11 assembled-molecule 11 Chromosome CM050591.1 = NC_080643.1 Primary Assembly 22630956 na SUPER_12 assembled-molecule 12 Chromosome CM050592.1 = NC_080644.1 Primary Assembly 22262677 na SUPER_13 assembled-molecule 13 Chromosome CM050593.1 = NC_080645.1 Primary Assembly 21551278 na SUPER_14 assembled-molecule 14 Chromosome CM050594.1 = NC_080646.1 Primary Assembly 21049297 na SUPER_15 assembled-molecule 15 Chromosome CM050595.1 = NC_080647.1 Primary Assembly 20566687 na SUPER_16 assembled-molecule 16 Chromosome CM050596.1 = NC_080648.1 Primary Assembly 19511261 na SUPER_17 assembled-molecule 17 Chromosome CM050597.1 = NC_080649.1 Primary Assembly 18006652 na SUPER_18 assembled-molecule 18 Chromosome CM050598.1 = NC_080650.1 Primary Assembly 14921164 na SUPER_19 assembled-molecule 19 Chromosome CM050599.1 = NC_080651.1 Primary Assembly 12555122 na SUPER_20 assembled-molecule 20 Chromosome CM050600.1 = NC_080652.1 Primary Assembly 12239593 na SUPER_21 assembled-molecule 21 Chromosome CM050601.1 = NC_080653.1 Primary Assembly 12036358 na SUPER_22 assembled-molecule 22 Chromosome CM050602.1 = NC_080654.1 Primary Assembly 9592563 na SUPER_23 assembled-molecule 23 Chromosome CM050603.1 = NC_080655.1 Primary Assembly 8416863 na SUPER_24 assembled-molecule 24 Chromosome CM050604.1 = NC_080656.1 Primary Assembly 8296844 na SUPER_25 assembled-molecule 25 Chromosome CM050605.1 = NC_080657.1 Primary Assembly 7670679 na SUPER_26 assembled-molecule 26 Chromosome CM050606.1 = NC_080658.1 Primary Assembly 7190956 na SUPER_27 assembled-molecule 27 Chromosome CM050607.1 = NC_080659.1 Primary Assembly 6772285 na SUPER_28 assembled-molecule 28 Chromosome CM050608.1 = NC_080660.1 Primary Assembly 6625760 na SUPER_29 assembled-molecule 29 Chromosome CM050609.1 = NC_080661.1 Primary Assembly 5159369 na SUPER_30 assembled-molecule 30 Chromosome CM050610.1 = NC_080662.1 Primary Assembly 4987572 na SUPER_31 assembled-molecule 31 Chromosome CM050611.1 = NC_080663.1 Primary Assembly 4462882 na SUPER_32 assembled-molecule 32 Chromosome CM050612.1 = NC_080664.1 Primary Assembly 3987155 na SUPER_33 assembled-molecule 33 Chromosome CM050613.1 = NC_080665.1 Primary Assembly 3511113 na SUPER_34 assembled-molecule 34 Chromosome CM050614.1 = NC_080666.1 Primary Assembly 2644149 na SUPER_35 assembled-molecule 35 Chromosome CM050615.1 = NC_080667.1 Primary Assembly 2575056 na SUPER_W assembled-molecule W Chromosome CM050616.1 = NC_080668.1 Primary Assembly 21546180 na SUPER_Z assembled-molecule Z Chromosome CM050617.1 = NC_080669.1 Primary Assembly 89147626 na scaffold_101 unplaced-scaffold na na JAQCNT010000038.1 = NW_026683183.1 Primary Assembly 222717 na scaffold_79 unplaced-scaffold na na JAQCNT010000039.1 = NW_026683207.1 Primary Assembly 677195 na scaffold_55 unplaced-scaffold na na JAQCNT010000040.1 = NW_026683193.1 Primary Assembly 2024811 na scaffold_39 unplaced-scaffold na na JAQCNT010000041.1 = NW_026683187.1 Primary Assembly 4516909 na scaffold_40 unplaced-scaffold na na JAQCNT010000042.1 = NW_026683188.1 Primary Assembly 4117062 na scaffold_46 unplaced-scaffold na na JAQCNT010000043.1 = NW_026683189.1 Primary Assembly 3129419 na scaffold_51 unplaced-scaffold na na JAQCNT010000044.1 = NW_026683190.1 Primary Assembly 2445016 na scaffold_53 unplaced-scaffold na na JAQCNT010000045.1 = NW_026683191.1 Primary Assembly 2162463 na scaffold_54 unplaced-scaffold na na JAQCNT010000046.1 = NW_026683192.1 Primary Assembly 2091851 na scaffold_60 unplaced-scaffold na na JAQCNT010000047.1 = NW_026683194.1 Primary Assembly 1508116 na scaffold_62 unplaced-scaffold na na JAQCNT010000048.1 = NW_026683195.1 Primary Assembly 1446652 na scaffold_64 unplaced-scaffold na na JAQCNT010000049.1 = NW_026683196.1 Primary Assembly 1315579 na scaffold_65 unplaced-scaffold na na JAQCNT010000050.1 = NW_026683197.1 Primary Assembly 1181476 na scaffold_69 unplaced-scaffold na na JAQCNT010000051.1 = NW_026683198.1 Primary Assembly 1067410 na scaffold_70 unplaced-scaffold na na JAQCNT010000052.1 = NW_026683199.1 Primary Assembly 1037885 na scaffold_71 unplaced-scaffold na na JAQCNT010000053.1 = NW_026683200.1 Primary Assembly 1022493 na scaffold_72 unplaced-scaffold na na JAQCNT010000054.1 = NW_026683201.1 Primary Assembly 989550 na scaffold_74 unplaced-scaffold na na JAQCNT010000055.1 = NW_026683202.1 Primary Assembly 973116 na scaffold_75 unplaced-scaffold na na JAQCNT010000056.1 = NW_026683203.1 Primary Assembly 921264 na scaffold_76 unplaced-scaffold na na JAQCNT010000057.1 = NW_026683204.1 Primary Assembly 912953 na scaffold_77 unplaced-scaffold na na JAQCNT010000058.1 = NW_026683205.1 Primary Assembly 792231 na scaffold_78 unplaced-scaffold na na JAQCNT010000059.1 = NW_026683206.1 Primary Assembly 702247 na scaffold_80 unplaced-scaffold na na JAQCNT010000060.1 = NW_026683208.1 Primary Assembly 655782 na scaffold_82 unplaced-scaffold na na JAQCNT010000061.1 = NW_026683209.1 Primary Assembly 588151 na scaffold_83 unplaced-scaffold na na JAQCNT010000062.1 = NW_026683210.1 Primary Assembly 581605 na scaffold_84 unplaced-scaffold na na JAQCNT010000063.1 = NW_026683211.1 Primary Assembly 532300 na scaffold_85 unplaced-scaffold na na JAQCNT010000064.1 = NW_026683212.1 Primary Assembly 526608 na scaffold_86 unplaced-scaffold na na JAQCNT010000065.1 = NW_026683213.1 Primary Assembly 486856 na scaffold_88 unplaced-scaffold na na JAQCNT010000066.1 = NW_026683214.1 Primary Assembly 481963 na scaffold_89 unplaced-scaffold na na JAQCNT010000067.1 = NW_026683215.1 Primary Assembly 451840 na scaffold_91 unplaced-scaffold na na JAQCNT010000068.1 = NW_026683216.1 Primary Assembly 398006 na scaffold_92 unplaced-scaffold na na JAQCNT010000069.1 = NW_026683217.1 Primary Assembly 395172 na scaffold_93 unplaced-scaffold na na JAQCNT010000070.1 = NW_026683218.1 Primary Assembly 390805 na scaffold_94 unplaced-scaffold na na JAQCNT010000071.1 = NW_026683219.1 Primary Assembly 387931 na scaffold_96 unplaced-scaffold na na JAQCNT010000072.1 = NW_026683220.1 Primary Assembly 307818 na scaffold_99 unplaced-scaffold na na JAQCNT010000073.1 = NW_026683221.1 Primary Assembly 242267 na scaffold_100 unplaced-scaffold na na JAQCNT010000074.1 = NW_026683182.1 Primary Assembly 233636 na scaffold_102 unplaced-scaffold na na JAQCNT010000075.1 = NW_026683184.1 Primary Assembly 210713 na scaffold_105 unplaced-scaffold na na JAQCNT010000076.1 = NW_026683185.1 Primary Assembly 28662 na scaffold_106 unplaced-scaffold na na JAQCNT010000077.1 = NW_026683186.1 Primary Assembly 991617 na