# Assembly name: rEmyOrb1.hap2 # Organism name: Emys orbicularis (European pond turtle) # Isolate: rEmyOrb1 # Sex: male # Taxid: 82168 # BioSample: SAMN31805221 # BioProject: PRJNA919101 # Submitter: Vertebrate Genomes Project # Date: 2023-01-26 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JAQMCV01 # Assembly method: Hifiasm + Hi-C phasing v. 0.16.1 + galaxy2; Bionano Solve v. 3.7.0 + galaxy0; salsa v. 2.3 galaxy2 # Expected final version: no # Genome coverage: 30.12x # Sequencing technology: PacBio Sequel II HiFi; Bionano DLS; Arima Hi-C v2 # GenBank assembly accession: GCA_028017845.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_028018775.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name H_1 unplaced-scaffold na na JAQMCV010000001.1 <> na Primary Assembly 57236 na H_10 unplaced-scaffold na na JAQMCV010000010.1 <> na Primary Assembly 37236 na H_11 unplaced-scaffold na na JAQMCV010000011.1 <> na Primary Assembly 35834 na H_12 unplaced-scaffold na na JAQMCV010000012.1 <> na Primary Assembly 34741 na H_13 unplaced-scaffold na na JAQMCV010000013.1 <> na Primary Assembly 32435 na H_14 unplaced-scaffold na na JAQMCV010000014.1 <> na Primary Assembly 32099 na H_15 unplaced-scaffold na na JAQMCV010000015.1 <> na Primary Assembly 29155 na H_16 unplaced-scaffold na na JAQMCV010000016.1 <> na Primary Assembly 28902 na H_17 unplaced-scaffold na na JAQMCV010000017.1 <> na Primary Assembly 25126 na H_18 unplaced-scaffold na na JAQMCV010000018.1 <> na Primary Assembly 24869 na H_19 unplaced-scaffold na na JAQMCV010000019.1 <> na Primary Assembly 18135 na H_2 unplaced-scaffold na na JAQMCV010000002.1 <> na Primary Assembly 50360 na H_3 unplaced-scaffold na na JAQMCV010000003.1 <> na Primary Assembly 45921 na H_4 unplaced-scaffold na na JAQMCV010000004.1 <> na Primary Assembly 44591 na H_5 unplaced-scaffold na na JAQMCV010000005.1 <> na Primary Assembly 42557 na H_6 unplaced-scaffold na na JAQMCV010000006.1 <> na Primary Assembly 41870 na H_7 unplaced-scaffold na na JAQMCV010000007.1 <> na Primary Assembly 41277 na H_8 unplaced-scaffold na na JAQMCV010000008.1 <> na Primary Assembly 38199 na H_9 unplaced-scaffold na na JAQMCV010000009.1 <> na Primary Assembly 37492 na scaffold_1 unplaced-scaffold na na JAQMCV010000020.1 <> na Primary Assembly 373365194 na scaffold_10 unplaced-scaffold na na JAQMCV010000029.1 <> na Primary Assembly 88857584 na scaffold_100 unplaced-scaffold na na JAQMCV010000119.1 <> na Primary Assembly 49969 na scaffold_101 unplaced-scaffold na na JAQMCV010000120.1 <> na Primary Assembly 48960 na scaffold_102 unplaced-scaffold na na JAQMCV010000121.1 <> na Primary Assembly 47497 na scaffold_103 unplaced-scaffold na na JAQMCV010000122.1 <> na Primary Assembly 46888 na scaffold_104 unplaced-scaffold na na JAQMCV010000123.1 <> na Primary Assembly 45644 na scaffold_105 unplaced-scaffold na na JAQMCV010000124.1 <> na Primary Assembly 43843 na scaffold_106 unplaced-scaffold na na JAQMCV010000125.1 <> na Primary Assembly 43810 na scaffold_107 unplaced-scaffold na na JAQMCV010000126.1 <> na Primary Assembly 41778 na scaffold_108 unplaced-scaffold na na JAQMCV010000127.1 <> na Primary Assembly 41198 na scaffold_109 unplaced-scaffold na na JAQMCV010000128.1 <> na Primary Assembly 40042 na scaffold_11 unplaced-scaffold na na JAQMCV010000030.1 <> na Primary Assembly 81172933 na scaffold_110 unplaced-scaffold na na JAQMCV010000129.1 <> na Primary Assembly 38902 na scaffold_111 unplaced-scaffold na na JAQMCV010000130.1 <> na Primary Assembly 38405 na scaffold_112 unplaced-scaffold na na JAQMCV010000131.1 <> na Primary Assembly 38179 na scaffold_113 unplaced-scaffold na na JAQMCV010000132.1 <> na Primary Assembly 37430 na scaffold_114 unplaced-scaffold na na JAQMCV010000133.1 <> na Primary Assembly 37323 na scaffold_115 unplaced-scaffold na na JAQMCV010000134.1 <> na Primary Assembly 36032 na scaffold_116 unplaced-scaffold na na JAQMCV010000135.1 <> na Primary Assembly 35807 na scaffold_117 unplaced-scaffold na na JAQMCV010000136.1 <> na Primary Assembly 35466 na scaffold_118 unplaced-scaffold na na JAQMCV010000137.1 <> na Primary Assembly 35229 na scaffold_119 unplaced-scaffold na na JAQMCV010000138.1 <> na Primary Assembly 35201 na scaffold_12 unplaced-scaffold na na JAQMCV010000031.1 <> na Primary Assembly 53809056 na scaffold_120 unplaced-scaffold na na JAQMCV010000139.1 <> na Primary Assembly 35151 na scaffold_121 unplaced-scaffold na na JAQMCV010000140.1 <> na Primary Assembly 34892 na scaffold_122 unplaced-scaffold na na JAQMCV010000141.1 <> na Primary Assembly 33653 na scaffold_123 unplaced-scaffold na na JAQMCV010000142.1 <> na Primary Assembly 31561 na scaffold_124 unplaced-scaffold na na JAQMCV010000143.1 <> na Primary Assembly 31052 na scaffold_125 unplaced-scaffold na na JAQMCV010000144.1 <> na Primary Assembly 30341 na scaffold_126 unplaced-scaffold na na JAQMCV010000145.1 <> na Primary Assembly 30285 na scaffold_127 unplaced-scaffold na na JAQMCV010000146.1 <> na Primary Assembly 29639 na scaffold_128 unplaced-scaffold na na JAQMCV010000147.1 <> na Primary Assembly 29562 na scaffold_129 unplaced-scaffold na na JAQMCV010000148.1 <> na Primary Assembly 29150 na scaffold_13 unplaced-scaffold na na JAQMCV010000032.1 <> na Primary Assembly 51064388 na scaffold_130 unplaced-scaffold na na JAQMCV010000149.1 <> na Primary Assembly 28937 na scaffold_131 unplaced-scaffold na na JAQMCV010000150.1 <> na Primary Assembly 25578 na scaffold_132 unplaced-scaffold na na JAQMCV010000151.1 <> na Primary Assembly 24631 na scaffold_133 unplaced-scaffold na na JAQMCV010000152.1 <> na Primary Assembly 24360 na scaffold_134 unplaced-scaffold na na JAQMCV010000153.1 <> na Primary Assembly 20892 na scaffold_135 unplaced-scaffold na na JAQMCV010000154.1 <> na Primary Assembly 19777 na scaffold_136 unplaced-scaffold na na JAQMCV010000155.1 <> na Primary Assembly 18017 na scaffold_137 unplaced-scaffold na na JAQMCV010000156.1 <> na Primary Assembly 16338 na scaffold_14 unplaced-scaffold na na JAQMCV010000033.1 <> na Primary Assembly 38553198 na scaffold_15 unplaced-scaffold na na JAQMCV010000034.1 <> na Primary Assembly 37556609 na scaffold_16 unplaced-scaffold na na JAQMCV010000035.1 <> na Primary Assembly 36320314 na scaffold_17 unplaced-scaffold na na JAQMCV010000036.1 <> na Primary Assembly 29241083 na scaffold_18 unplaced-scaffold na na JAQMCV010000037.1 <> na Primary Assembly 29064708 na scaffold_19 unplaced-scaffold na na JAQMCV010000038.1 <> na Primary Assembly 25747829 na scaffold_2 unplaced-scaffold na na JAQMCV010000021.1 <> na Primary Assembly 283816758 na scaffold_20 unplaced-scaffold na na JAQMCV010000039.1 <> na Primary Assembly 22276197 na scaffold_21 unplaced-scaffold na na JAQMCV010000040.1 <> na Primary Assembly 21979480 na scaffold_22 unplaced-scaffold na na JAQMCV010000041.1 <> na Primary Assembly 19918490 na scaffold_23 unplaced-scaffold na na JAQMCV010000042.1 <> na Primary Assembly 19515181 na scaffold_24 unplaced-scaffold na na JAQMCV010000043.1 <> na Primary Assembly 7872119 na scaffold_25 unplaced-scaffold na na JAQMCV010000044.1 <> na Primary Assembly 7169582 na scaffold_26 unplaced-scaffold na na JAQMCV010000045.1 <> na Primary Assembly 7130966 na scaffold_27 unplaced-scaffold na na JAQMCV010000046.1 <> na Primary Assembly 5136772 na scaffold_28 unplaced-scaffold na na JAQMCV010000047.1 <> na Primary Assembly 5024092 na scaffold_29 unplaced-scaffold na na JAQMCV010000048.1 <> na Primary Assembly 3855652 na scaffold_3 unplaced-scaffold na na JAQMCV010000022.1 <> na Primary Assembly 241594704 na scaffold_30 unplaced-scaffold na na JAQMCV010000049.1 <> na Primary Assembly 3576978 na scaffold_31 unplaced-scaffold na na JAQMCV010000050.1 <> na Primary Assembly 3198664 na scaffold_32 unplaced-scaffold na na JAQMCV010000051.1 <> na Primary Assembly 2377987 na scaffold_33 unplaced-scaffold na na JAQMCV010000052.1 <> na Primary Assembly 2197037 na scaffold_34 unplaced-scaffold na na JAQMCV010000053.1 <> na Primary Assembly 2062863 na scaffold_35 unplaced-scaffold na na JAQMCV010000054.1 <> na Primary Assembly 1712051 na scaffold_36 unplaced-scaffold na na JAQMCV010000055.1 <> na Primary Assembly 1847176 na scaffold_37 unplaced-scaffold na na JAQMCV010000056.1 <> na Primary Assembly 1836885 na scaffold_38 unplaced-scaffold na na JAQMCV010000057.1 <> na Primary Assembly 1608632 na scaffold_39 unplaced-scaffold na na JAQMCV010000058.1 <> na Primary Assembly 1529048 na scaffold_4 unplaced-scaffold na na JAQMCV010000023.1 <> na Primary Assembly 210333468 na scaffold_40 unplaced-scaffold na na JAQMCV010000059.1 <> na Primary Assembly 1515822 na scaffold_41 unplaced-scaffold na na JAQMCV010000060.1 <> na Primary Assembly 1441464 na scaffold_42 unplaced-scaffold na na JAQMCV010000061.1 <> na Primary Assembly 1440654 na scaffold_43 unplaced-scaffold na na JAQMCV010000062.1 <> na Primary Assembly 1372083 na scaffold_44 unplaced-scaffold na na JAQMCV010000063.1 <> na Primary Assembly 1108741 na scaffold_45 unplaced-scaffold na na JAQMCV010000064.1 <> na Primary Assembly 1085611 na scaffold_46 unplaced-scaffold na na JAQMCV010000065.1 <> na Primary Assembly 1085017 na scaffold_47 unplaced-scaffold na na JAQMCV010000066.1 <> na Primary Assembly 1038852 na scaffold_48 unplaced-scaffold na na JAQMCV010000067.1 <> na Primary Assembly 1013601 na scaffold_49 unplaced-scaffold na na JAQMCV010000068.1 <> na Primary Assembly 839942 na scaffold_5 unplaced-scaffold na na JAQMCV010000024.1 <> na Primary Assembly 135176522 na scaffold_50 unplaced-scaffold na na JAQMCV010000069.1 <> na Primary Assembly 821029 na scaffold_51 unplaced-scaffold na na JAQMCV010000070.1 <> na Primary Assembly 754126 na scaffold_52 unplaced-scaffold na na JAQMCV010000071.1 <> na Primary Assembly 623688 na scaffold_53 unplaced-scaffold na na JAQMCV010000072.1 <> na Primary Assembly 616814 na scaffold_54 unplaced-scaffold na na JAQMCV010000073.1 <> na Primary Assembly 569380 na scaffold_55 unplaced-scaffold na na JAQMCV010000074.1 <> na Primary Assembly 560656 na scaffold_56 unplaced-scaffold na na JAQMCV010000075.1 <> na Primary Assembly 504491 na scaffold_57 unplaced-scaffold na na JAQMCV010000076.1 <> na Primary Assembly 494744 na scaffold_58 unplaced-scaffold na na JAQMCV010000077.1 <> na Primary Assembly 472925 na scaffold_59 unplaced-scaffold na na JAQMCV010000078.1 <> na Primary Assembly 417714 na scaffold_6 unplaced-scaffold na na JAQMCV010000025.1 <> na Primary Assembly 130989954 na scaffold_60 unplaced-scaffold na na JAQMCV010000079.1 <> na Primary Assembly 414591 na scaffold_61 unplaced-scaffold na na JAQMCV010000080.1 <> na Primary Assembly 398381 na scaffold_62 unplaced-scaffold na na JAQMCV010000081.1 <> na Primary Assembly 397653 na scaffold_63 unplaced-scaffold na na JAQMCV010000082.1 <> na Primary Assembly 388453 na scaffold_64 unplaced-scaffold na na JAQMCV010000083.1 <> na Primary Assembly 315207 na scaffold_65 unplaced-scaffold na na JAQMCV010000084.1 <> na Primary Assembly 307428 na scaffold_66 unplaced-scaffold na na JAQMCV010000085.1 <> na Primary Assembly 296604 na scaffold_67 unplaced-scaffold na na JAQMCV010000086.1 <> na Primary Assembly 219735 na scaffold_68 unplaced-scaffold na na JAQMCV010000087.1 <> na Primary Assembly 212045 na scaffold_69 unplaced-scaffold na na JAQMCV010000088.1 <> na Primary Assembly 176764 na scaffold_7 unplaced-scaffold na na JAQMCV010000026.1 <> na Primary Assembly 114083970 na scaffold_70 unplaced-scaffold na na JAQMCV010000089.1 <> na Primary Assembly 143871 na scaffold_71 unplaced-scaffold na na JAQMCV010000090.1 <> na Primary Assembly 140200 na scaffold_72 unplaced-scaffold na na JAQMCV010000091.1 <> na Primary Assembly 133349 na scaffold_73 unplaced-scaffold na na JAQMCV010000092.1 <> na Primary Assembly 131425 na scaffold_74 unplaced-scaffold na na JAQMCV010000093.1 <> na Primary Assembly 130773 na scaffold_75 unplaced-scaffold na na JAQMCV010000094.1 <> na Primary Assembly 122535 na scaffold_76 unplaced-scaffold na na JAQMCV010000095.1 <> na Primary Assembly 115851 na scaffold_77 unplaced-scaffold na na JAQMCV010000096.1 <> na Primary Assembly 112117 na scaffold_78 unplaced-scaffold na na JAQMCV010000097.1 <> na Primary Assembly 110118 na scaffold_79 unplaced-scaffold na na JAQMCV010000098.1 <> na Primary Assembly 101722 na scaffold_8 unplaced-scaffold na na JAQMCV010000027.1 <> na Primary Assembly 107847434 na scaffold_80 unplaced-scaffold na na JAQMCV010000099.1 <> na Primary Assembly 98011 na scaffold_81 unplaced-scaffold na na JAQMCV010000100.1 <> na Primary Assembly 95585 na scaffold_82 unplaced-scaffold na na JAQMCV010000101.1 <> na Primary Assembly 92207 na scaffold_83 unplaced-scaffold na na JAQMCV010000102.1 <> na Primary Assembly 89934 na scaffold_84 unplaced-scaffold na na JAQMCV010000103.1 <> na Primary Assembly 87504 na scaffold_85 unplaced-scaffold na na JAQMCV010000104.1 <> na Primary Assembly 84712 na scaffold_86 unplaced-scaffold na na JAQMCV010000105.1 <> na Primary Assembly 84672 na scaffold_87 unplaced-scaffold na na JAQMCV010000106.1 <> na Primary Assembly 79763 na scaffold_88 unplaced-scaffold na na JAQMCV010000107.1 <> na Primary Assembly 79344 na scaffold_89 unplaced-scaffold na na JAQMCV010000108.1 <> na Primary Assembly 77101 na scaffold_9 unplaced-scaffold na na JAQMCV010000028.1 <> na Primary Assembly 91336828 na scaffold_90 unplaced-scaffold na na JAQMCV010000109.1 <> na Primary Assembly 76138 na scaffold_91 unplaced-scaffold na na JAQMCV010000110.1 <> na Primary Assembly 75440 na scaffold_92 unplaced-scaffold na na JAQMCV010000111.1 <> na Primary Assembly 75117 na scaffold_93 unplaced-scaffold na na JAQMCV010000112.1 <> na Primary Assembly 68799 na scaffold_94 unplaced-scaffold na na JAQMCV010000113.1 <> na Primary Assembly 62341 na scaffold_95 unplaced-scaffold na na JAQMCV010000114.1 <> na Primary Assembly 59850 na scaffold_96 unplaced-scaffold na na JAQMCV010000115.1 <> na Primary Assembly 58691 na scaffold_97 unplaced-scaffold na na JAQMCV010000116.1 <> na Primary Assembly 58319 na scaffold_98 unplaced-scaffold na na JAQMCV010000117.1 <> na Primary Assembly 55619 na scaffold_99 unplaced-scaffold na na JAQMCV010000118.1 <> na Primary Assembly 52751 na